BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Pfam PF13361 UvrD-like helicase C-terminal domain 278 621 5.3E-71 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 SUPERFAMILY SSF52540 6 647 5.5E-174 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 725 0.0 T 31-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Gene3D G3DSA:1.10.486.10 383 543 1.1E-121 T 31-10-2018 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Gene3D G3DSA:3.40.50.300 282 641 1.1E-121 T 31-10-2018 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 272 1.7E-67 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Gene3D G3DSA:3.40.50.300 10 275 1.2E-94 T 31-10-2018 BRM88_24285 10d88720a81f22c0c9207a71b001e33e 728 Gene3D G3DSA:1.10.10.160 114 188 1.2E-94 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily BRM88_09660 18ce482e2a970c841444de20944d1096 601 Gene3D G3DSA:3.30.70.3380 373 482 7.8E-38 T 31-10-2018 BRM88_09660 18ce482e2a970c841444de20944d1096 601 SUPERFAMILY SSF54980 297 375 1.12E-18 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_09660 18ce482e2a970c841444de20944d1096 601 Gene3D G3DSA:3.40.50.300 5 190 4.1E-70 T 31-10-2018 BRM88_09660 18ce482e2a970c841444de20944d1096 601 Pfam PF00679 Elongation factor G C-terminus 404 484 1.8E-18 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_09660 18ce482e2a970c841444de20944d1096 601 PRINTS PR00315 GTP-binding elongation factor signature 11 24 3.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 PRINTS PR00315 GTP-binding elongation factor signature 95 106 3.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 PRINTS PR00315 GTP-binding elongation factor signature 79 89 3.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 PRINTS PR00315 GTP-binding elongation factor signature 54 62 3.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.1E-14 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 Pfam PF06421 GTP-binding protein LepA C-terminus 492 598 3.8E-51 T 31-10-2018 IPR013842 GTP-binding protein LepA, C-terminal BRM88_09660 18ce482e2a970c841444de20944d1096 601 Gene3D G3DSA:3.30.70.870 291 372 3.2E-36 T 31-10-2018 BRM88_09660 18ce482e2a970c841444de20944d1096 601 Pfam PF00009 Elongation factor Tu GTP binding domain 8 186 1.3E-51 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 SMART SM00838 403 491 0.0029 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_09660 18ce482e2a970c841444de20944d1096 601 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_09660 18ce482e2a970c841444de20944d1096 601 Gene3D G3DSA:2.40.30.10 192 290 8.3E-31 T 31-10-2018 BRM88_09660 18ce482e2a970c841444de20944d1096 601 SUPERFAMILY SSF54980 404 498 2.93E-23 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_09660 18ce482e2a970c841444de20944d1096 601 SUPERFAMILY SSF52540 5 226 8.8E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09660 18ce482e2a970c841444de20944d1096 601 Hamap MF_00071 Elongation factor 4 [lepA]. 1 601 294.584 T 31-10-2018 IPR006297 Elongation factor 4 GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 TIGRFAM TIGR01393 lepA: elongation factor 4 8 600 1.1E-290 T 31-10-2018 IPR006297 Elongation factor 4 GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 Pfam PF03144 Elongation factor Tu domain 2 210 280 7.9E-10 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 177 5.8E-17 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_09660 18ce482e2a970c841444de20944d1096 601 Gene3D G3DSA:3.30.70.2570 485 558 8.0E-32 T 31-10-2018 IPR038363 LepA, C-terminal domain superfamily BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 31-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 233 2.1E-42 T 31-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 429 4.5E-198 T 31-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 356 367 - T 31-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 346 426 6.9E-30 T 31-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 SUPERFAMILY SSF142984 255 338 5.36E-22 T 31-10-2018 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Pfam PF10531 SLBB domain 257 305 6.5E-11 T 31-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 SUPERFAMILY SSF142019 19 252 5.23E-78 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Gene3D G3DSA:3.40.50.11540 67 244 7.4E-74 T 31-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 SUPERFAMILY SSF140490 339 437 4.71E-35 T 31-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Gene3D G3DSA:3.10.20.600 246 340 1.7E-27 T 31-10-2018 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 Gene3D G3DSA:1.20.1440.230 342 439 1.9E-33 T 31-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17260 73182109502670b43a85bbc63c0e14e6 444 SMART SM00928 343 388 4.4E-26 T 31-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 SUPERFAMILY SSF54368 22 118 2.35E-12 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 SMART SM01230 121 378 1.8E-100 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 Pfam PF00120 Glutamine synthetase, catalytic domain 122 455 2.6E-95 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 SUPERFAMILY SSF55931 122 456 4.22E-98 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BRM88_14710 e820349c1fb471e16fb4d393a72c751f 459 Gene3D G3DSA:3.30.590.10 124 459 8.3E-98 T 31-10-2018 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 183 189 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 Gene3D G3DSA:3.40.50.150 87 278 2.4E-59 T 31-10-2018 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 Gene3D G3DSA:1.10.8.10 10 86 6.9E-20 T 31-10-2018 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 SUPERFAMILY SSF53335 20 276 6.57E-57 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 278 6.4E-71 T 31-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 10 278 43.509 T 31-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 274 1.4E-88 T 31-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BRM88_19465 187d22167f48a6e28f2c4bd0c20dbbfb 281 Pfam PF05175 Methyltransferase small domain 103 194 4.3E-16 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BRM88_21195 3688f351fd41cfb10f6a517587cb05f9 448 Pfam PF04085 rod shape-determining protein MreC 133 274 1.4E-33 T 31-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BRM88_21195 3688f351fd41cfb10f6a517587cb05f9 448 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 18 276 2.7E-49 T 31-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BRM88_21195 3688f351fd41cfb10f6a517587cb05f9 448 Gene3D G3DSA:2.40.10.340 129 272 2.6E-30 T 31-10-2018 BRM88_21195 3688f351fd41cfb10f6a517587cb05f9 448 Gene3D G3DSA:2.40.10.350 187 262 2.6E-30 T 31-10-2018 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 Gene3D G3DSA:3.40.50.300 334 585 9.9E-89 T 31-10-2018 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 Gene3D G3DSA:1.20.1560.10 2 333 2.6E-69 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 SUPERFAMILY SSF52540 335 584 1.07E-87 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 16 586 3.4E-238 T 31-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 SMART SM00382 372 559 1.6E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 Pfam PF00005 ABC transporter 363 513 2.6E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 SUPERFAMILY SSF90123 18 332 3.14E-65 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_12135 36c1d80913a2f8f01f3f05df2c5efc37 589 Pfam PF00664 ABC transporter transmembrane region 32 298 1.7E-39 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_23105 8486bf1462902b71d9439dc93017aff7 293 Gene3D G3DSA:3.40.50.1220 15 270 6.7E-81 T 31-10-2018 BRM88_23105 8486bf1462902b71d9439dc93017aff7 293 Hamap MF_01967 NAD-dependent protein deacetylase [cobB]. 3 273 64.231 T 31-10-2018 IPR026587 Sirtuin, class II Reactome: R-HSA-2151201 BRM88_23105 8486bf1462902b71d9439dc93017aff7 293 SUPERFAMILY SSF52467 10 273 6.16E-80 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BRM88_23105 8486bf1462902b71d9439dc93017aff7 293 Gene3D G3DSA:3.30.1600.10 37 198 6.7E-81 T 31-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily BRM88_23105 8486bf1462902b71d9439dc93017aff7 293 Pfam PF02146 Sir2 family 27 229 5.4E-46 T 31-10-2018 IPR003000 Sirtuin family GO:0070403 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Gene3D G3DSA:3.30.1490.20 138 202 1.2E-104 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 3 121 3.5E-39 T 31-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 SUPERFAMILY SSF56059 124 311 3.42E-52 T 31-10-2018 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 SUPERFAMILY SSF52440 3 123 1.93E-38 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 154.472 T 31-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Gene3D G3DSA:3.40.50.20 8 115 1.2E-104 T 31-10-2018 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 TIGRFAM TIGR01380 glut_syn: glutathione synthase 3 312 1.4E-136 T 31-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Gene3D G3DSA:3.30.470.20 116 296 1.2E-104 T 31-10-2018 BRM88_09110 31eee76b083905ad6ee2bf22b21a6826 316 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 1.5E-71 T 31-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 8.7E-68 T 31-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 Gene3D G3DSA:2.40.50.140 1 124 2.3E-61 T 31-10-2018 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.549 T 31-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 SUPERFAMILY SSF50249 3 123 5.31E-50 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 6.2E-59 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 PIRSF PIRSF002133 1 124 8.3E-54 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19150 a09ae44c6472ef6fda23e557910517a0 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 1.2E-40 T 31-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Gene3D G3DSA:3.40.50.300 320 791 4.8E-137 T 31-10-2018 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 PIRSF PIRSF000980 8 1117 0.0 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 SUPERFAMILY SSF52540 9 331 2.81E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 9 790 4.5E-209 T 31-10-2018 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Gene3D G3DSA:1.10.10.160 87 180 1.4E-57 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 9 1071 0.0 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 SUPERFAMILY SSF52540 345 793 7.44E-74 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 8 1115 16.795 T 31-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 SUPERFAMILY SSF52980 806 1108 5.04E-51 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Gene3D G3DSA:3.40.50.10930 11 285 1.4E-57 T 31-10-2018 BRM88_23780 5ccd6dfa39c22c0eb9c4c82cd3f96647 1137 Gene3D G3DSA:1.10.486.10 435 645 4.8E-137 T 31-10-2018 BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 42.211 T 31-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 129 5.2E-49 T 31-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 SUPERFAMILY SSF51230 4 128 1.09E-44 T 31-10-2018 IPR011053 Single hybrid motif BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 Gene3D G3DSA:2.40.50.100 2 129 6.3E-49 T 31-10-2018 BRM88_09400 f133f6de53ad8a50d20067389daf1a29 131 Pfam PF01597 Glycine cleavage H-protein 8 128 5.8E-44 T 31-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:3.40.50.20 1 116 2.6E-49 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:3.30.470.20 119 403 2.2E-126 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF52335 942 1077 1.28E-39 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SMART SM01096 425 548 1.9E-71 T 31-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:1.10.1030.10 404 554 1.3E-47 T 31-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:3.30.470.20 666 941 2.4E-113 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 428 548 8.5E-40 T 31-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1059 0.0 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF56059 674 939 2.47E-102 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:3.40.50.20 555 663 3.0E-49 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 882 9.7E-38 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.6E-70 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SMART SM00851 962 1048 1.0E-32 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF52440 1 127 1.73E-49 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF48108 396 555 9.15E-51 T 31-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Pfam PF02142 MGS-like domain 963 1048 1.9E-19 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 845 852 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF56059 128 401 6.36E-108 T 31-10-2018 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1074 13.488 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Gene3D G3DSA:3.40.50.1380 945 1079 9.3E-38 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 SUPERFAMILY SSF52440 557 676 1.37E-49 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.287 T 31-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15385 8af5a462399585f5cc35a410410a86c4 1080 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.2E-66 T 31-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_02135 28cff826bd3325c1192612cd43346e76 50 Pfam PF08085 Entericidin EcnA/B family 22 42 3.2E-7 T 31-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 5 209 1.3E-67 T 31-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 Gene3D G3DSA:3.40.50.1360 5 208 2.6E-77 T 31-10-2018 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 Gene3D G3DSA:3.30.70.260 123 194 2.6E-77 T 31-10-2018 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 SUPERFAMILY SSF75445 125 197 7.85E-23 T 31-10-2018 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 SUPERFAMILY SSF100950 2 144 2.76E-47 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 47 210 5.5E-58 T 31-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BRM88_05745 202cd341944904a33b7bd9c92845c8c1 215 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 1 215 33.733 T 31-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BRM88_00525 d3f73a0a3c0b33b4a99c71e8e7a26454 312 Gene3D G3DSA:2.60.200.20 1 83 2.3E-6 T 31-10-2018 BRM88_01215 8619593e2903295f8384edd130fa55a3 1010 SUPERFAMILY SSF49452 31 105 1.02E-7 T 31-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BRM88_01215 8619593e2903295f8384edd130fa55a3 1010 SUPERFAMILY SSF56935 111 1010 1.28E-58 T 31-10-2018 BRM88_01215 8619593e2903295f8384edd130fa55a3 1010 Pfam PF00593 TonB dependent receptor 370 982 6.6E-18 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_00135 b925a2352d205650b6f0fbff23102062 402 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 4.0E-35 T 31-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_00135 b925a2352d205650b6f0fbff23102062 402 Gene3D G3DSA:3.40.50.720 1 401 7.8E-175 T 31-10-2018 BRM88_00135 b925a2352d205650b6f0fbff23102062 402 Pfam PF07055 Enoyl reductase FAD binding domain 327 390 2.2E-31 T 31-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_00135 b925a2352d205650b6f0fbff23102062 402 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 318 3.5E-109 T 31-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_00135 b925a2352d205650b6f0fbff23102062 402 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 396 56.356 T 31-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_03680 a027e84ceeda46b4045974015310c4a0 127 Pfam PF04138 GtrA-like protein 9 126 1.4E-14 T 31-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 BRM88_15700 c366ee90c2f040d5913e33fbfe22600d 162 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 158 2.1E-48 T 31-10-2018 IPR008136 CinA, C-terminal BRM88_15700 c366ee90c2f040d5913e33fbfe22600d 162 Gene3D G3DSA:3.90.950.20 1 162 1.2E-59 T 31-10-2018 IPR036653 CinA-like, C-terminal BRM88_15700 c366ee90c2f040d5913e33fbfe22600d 162 Pfam PF02464 Competence-damaged protein 8 160 4.0E-57 T 31-10-2018 IPR008136 CinA, C-terminal BRM88_15700 c366ee90c2f040d5913e33fbfe22600d 162 SUPERFAMILY SSF142433 5 160 4.97E-54 T 31-10-2018 IPR036653 CinA-like, C-terminal BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 Gene3D G3DSA:2.40.420.20 277 368 5.6E-22 T 31-10-2018 BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 365 1.1E-81 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 SUPERFAMILY SSF111369 51 292 2.09E-67 T 31-10-2018 BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 Gene3D G3DSA:2.40.50.100 62 207 4.2E-70 T 31-10-2018 BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 54 286 2.8E-13 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 Gene3D G3DSA:2.40.30.170 56 276 4.2E-70 T 31-10-2018 BRM88_16130 c97b3cfdc6ae58cf3eaaf8d1dbddd8b5 370 Gene3D G3DSA:1.10.287.470 97 170 4.2E-70 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 SUPERFAMILY SSF51971 342 527 3.53E-40 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 Gene3D G3DSA:3.50.50.60 478 632 6.0E-110 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 Gene3D G3DSA:3.40.50.720 384 672 6.0E-110 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 384 643 7.3E-21 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 15 337 1.5E-71 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 386 405 2.9E-10 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 506 524 2.9E-10 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 625 641 2.9E-10 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 Gene3D G3DSA:3.20.20.70 11 378 3.3E-113 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 522 531 2.0E-5 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 385 407 2.0E-5 T 31-10-2018 BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 SUPERFAMILY SSF51905 469 657 1.58E-19 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19745 c22c7f3ace69143be57388b191cf0fe2 679 SUPERFAMILY SSF51395 11 371 2.62E-102 T 31-10-2018 BRM88_24205 401921912db9dd957fad5be790aaf905 212 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 32 211 1.1E-53 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BRM88_24205 401921912db9dd957fad5be790aaf905 212 SUPERFAMILY SSF53335 29 211 2.81E-34 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_24205 401921912db9dd957fad5be790aaf905 212 PIRSF PIRSF003078 1 212 1.4E-76 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BRM88_24205 401921912db9dd957fad5be790aaf905 212 Gene3D G3DSA:3.40.50.150 3 212 1.7E-62 T 31-10-2018 BRM88_24205 401921912db9dd957fad5be790aaf905 212 Pfam PF02527 rRNA small subunit methyltransferase G 31 207 6.4E-53 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BRM88_24205 401921912db9dd957fad5be790aaf905 212 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 20 208 26.37 T 31-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 10 151 3.3E-33 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 6 167 2.4E-82 T 31-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 PIRSF PIRSF006443 1 165 2.0E-61 T 31-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 SMART SM00852 13 157 2.4E-26 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 Pfam PF00994 Probable molybdopterin binding domain 14 154 5.0E-30 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 Gene3D G3DSA:3.40.980.10 3 168 4.2E-46 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_19280 8043fea6befdda1f87bb4aeda8ee32cb 172 SUPERFAMILY SSF53218 7 165 7.2E-42 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Gene3D G3DSA:1.25.40.10 199 285 3.5E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Pfam PF14559 Tetratricopeptide repeat 135 192 2.2E-6 T 31-10-2018 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 PRINTS PR00421 Thioredoxin family signature 28 36 3.0E-6 T 31-10-2018 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 PRINTS PR00421 Thioredoxin family signature 36 45 3.0E-6 T 31-10-2018 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 PRINTS PR00421 Thioredoxin family signature 76 87 3.0E-6 T 31-10-2018 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 SUPERFAMILY SSF52833 6 111 1.4E-32 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 ProSitePatterns PS00194 Thioredoxin family active site. 29 47 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Gene3D G3DSA:1.25.40.10 132 196 3.9E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 TIGRFAM TIGR01068 thioredoxin: thioredoxin 15 111 2.8E-30 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Pfam PF00085 Thioredoxin 8 111 2.9E-26 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Gene3D G3DSA:3.40.30.10 1 111 2.0E-31 T 31-10-2018 BRM88_17750 a0e4beea7566cae3a0513deb88b8cf40 285 Pfam PF14561 Tetratricopeptide repeat 199 285 1.2E-17 T 31-10-2018 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 428 9.2E-176 T 31-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 SUPERFAMILY SSF47446 328 430 8.01E-37 T 31-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Pfam PF00448 SRP54-type protein, GTPase domain 101 295 1.7E-73 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Gene3D G3DSA:1.20.120.140 5 306 5.3E-120 T 31-10-2018 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Pfam PF02978 Signal peptide binding domain 328 427 1.1E-32 T 31-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 SMART SM00963 1 86 4.1E-35 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Gene3D G3DSA:3.40.50.300 90 285 5.3E-120 T 31-10-2018 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Gene3D G3DSA:1.10.260.30 328 455 2.9E-40 T 31-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.3E-20 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 SMART SM00382 99 301 6.5E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 SMART SM00962 100 296 4.2E-114 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 33.879 T 31-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 BRM88_06755 101bdd3b72d31dfbf06e159d34a808ff 458 SUPERFAMILY SSF52540 42 353 1.49E-52 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20435 4ee9b3707d4a93262aad3753cae227da 87 Hamap MF_00910 Cell division protein FtsL [ftsL]. 2 85 16.287 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 BRM88_20435 4ee9b3707d4a93262aad3753cae227da 87 Pfam PF04999 Cell division protein FtsL 5 87 1.3E-24 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 BRM88_20435 4ee9b3707d4a93262aad3753cae227da 87 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 4 85 4.2E-21 T 31-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 200 4.9E-75 T 31-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 1.5E-7 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 1.5E-7 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00096 Glutamine amidotransferase superfamily signature 173 186 1.5E-7 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00097 Anthranilate synthase component II signature 80 91 3.5E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00097 Anthranilate synthase component II signature 53 62 3.5E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00097 Anthranilate synthase component II signature 173 186 3.5E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Gene3D G3DSA:3.40.50.880 8 202 7.7E-53 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Pfam PF00958 GMP synthase C terminal domain 429 520 3.7E-43 T 31-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Gene3D G3DSA:3.40.50.620 205 401 1.6E-74 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 SUPERFAMILY SSF54810 401 521 8.11E-50 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Pfam PF02540 NAD synthase 214 296 2.5E-8 T 31-10-2018 IPR022310 NAD/GMP synthase BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 SUPERFAMILY SSF52317 4 201 3.64E-55 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Gene3D G3DSA:3.30.300.10 402 521 7.3E-51 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Pfam PF00117 Glutamine amidotransferase class-I 11 196 2.6E-39 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 208 521 1.3E-149 T 31-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 2.7E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 9 23 2.7E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 2.7E-6 T 31-10-2018 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 521 55.353 T 31-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 BRM88_11425 9d5da785bc458e224ca9545540e1a294 521 SUPERFAMILY SSF52402 190 442 2.65E-58 T 31-10-2018 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 Pfam PF01590 GAF domain 39 166 5.0E-6 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 Gene3D G3DSA:3.30.450.40 30 173 3.6E-13 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 SUPERFAMILY SSF47384 170 220 8.83E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 346 356 5.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 396 5.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 5.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 PRINTS PR00344 Bacterial sensor protein C-terminal signature 328 342 5.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 Gene3D G3DSA:1.10.287.130 174 247 4.6E-5 T 31-10-2018 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 SMART SM00065 38 180 6.7E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 397 8.3E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 SMART SM00387 292 398 5.0E-21 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 SUPERFAMILY SSF55874 254 397 1.31E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 Gene3D G3DSA:3.30.565.10 253 398 9.4E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_18095 7e2f2f2f0a40ddc84f4865163cb1dd51 398 SUPERFAMILY SSF55781 40 182 2.22E-23 T 31-10-2018 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 Gene3D G3DSA:3.30.1400.10 93 232 2.5E-38 T 31-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 98 223 2.0E-37 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 37 225 3.1E-68 T 31-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 SMART SM00771 95 225 2.6E-54 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 Hamap MF_00509 Cell division protein ZipA [zipA]. 5 227 17.57 T 31-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 SUPERFAMILY SSF64383 94 232 1.31E-36 T 31-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 BRM88_12780 15cf8656df7c36aefe283cef5f2ae1dd 243 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 98 226 7.0E-70 T 31-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Gene3D G3DSA:1.10.8.60 310 384 6.1E-24 T 31-10-2018 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 466 486 5.5E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 466 5.5E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Pfam PF02954 Bacterial regulatory protein, Fis family 444 483 1.4E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Gene3D G3DSA:1.10.10.60 408 489 1.8E-13 T 31-10-2018 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Pfam PF06490 Flagellar regulatory protein FleQ 5 120 4.3E-20 T 31-10-2018 IPR010518 Flagellar regulatory FleQ BRM88_13625 7b45c3e640a67c5098be11066656877b 494 SUPERFAMILY SSF52540 140 379 1.16E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13625 7b45c3e640a67c5098be11066656877b 494 SUPERFAMILY SSF52172 2 180 8.2E-5 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Pfam PF00158 Sigma-54 interaction domain 140 305 3.4E-71 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 SMART SM00382 158 305 3.6E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13625 7b45c3e640a67c5098be11066656877b 494 SUPERFAMILY SSF46689 350 486 4.93E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BRM88_13625 7b45c3e640a67c5098be11066656877b 494 Gene3D G3DSA:3.40.50.300 125 309 1.4E-65 T 31-10-2018 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 Gene3D G3DSA:3.40.1050.10 1 210 3.7E-81 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 Pfam PF00484 Carbonic anhydrase 37 188 7.6E-50 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 SUPERFAMILY SSF53056 1 212 1.24E-75 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 31-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_12840 ecdb6074a5cf25cc0334b754607e84dc 220 SMART SM00947 30 193 2.5E-66 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF04545 Sigma-70, region 4 557 610 1.8E-19 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 SUPERFAMILY SSF88946 121 456 4.87E-100 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 SUPERFAMILY SSF88659 462 535 2.94E-21 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 385 610 1.5E-39 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 7 622 45.547 T 31-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 SUPERFAMILY SSF88659 519 621 1.77E-27 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF04539 Sigma-70 region 3 468 544 1.2E-30 T 31-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 582 608 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF04546 Sigma-70, non-essential region 145 353 1.9E-49 T 31-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF04542 Sigma-70 region 2 389 458 1.7E-21 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Gene3D G3DSA:1.10.10.10 539 622 2.3E-36 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF03979 Sigma-70 factor, region 1.1 8 87 1.3E-28 T 31-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Gene3D G3DSA:1.10.601.10 119 458 6.3E-121 T 31-10-2018 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 413 426 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Gene3D G3DSA:1.10.220.120 5 67 2.9E-27 T 31-10-2018 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 385 621 1.0E-121 T 31-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Gene3D G3DSA:1.10.10.10 462 538 3.2E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 Pfam PF00140 Sigma-70 factor, region 1.2 104 135 5.4E-13 T 31-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 PRINTS PR00046 Major sigma-70 factor signature 437 445 3.3E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 PRINTS PR00046 Major sigma-70 factor signature 597 608 3.3E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 PRINTS PR00046 Major sigma-70 factor signature 561 573 3.3E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 PRINTS PR00046 Major sigma-70 factor signature 413 426 3.3E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_03060 d9fccddbc6f191d48682d772c1b10692 624 PRINTS PR00046 Major sigma-70 factor signature 582 597 3.3E-31 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 SUPERFAMILY SSF56988 462 639 8.24E-23 T 31-10-2018 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 187 203 1.5E-9 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 91 110 1.5E-9 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 PRINTS PR00133 Glycosyl hydrolase family 3 signature 258 276 1.5E-9 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Gene3D G3DSA:3.20.20.300 25 354 2.6E-93 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 SMART SM01217 799 867 4.2E-26 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 SUPERFAMILY SSF52279 376 765 5.89E-52 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Gene3D G3DSA:3.40.50.1700 540 764 1.6E-56 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 53 333 1.9E-43 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Gene3D G3DSA:3.40.50.1700 362 486 1.4E-18 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 376 762 7.7E-61 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 SUPERFAMILY SSF51445 31 375 1.68E-93 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Pfam PF14310 Fibronectin type III-like domain 799 865 2.7E-19 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Gene3D G3DSA:2.60.40.10 765 875 4.4E-28 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 SMART SM00758 459 613 1.3E-24 T 31-10-2018 IPR011658 PA14 domain BRM88_09310 2dabd6c15765b71baeba5220a642f988 889 Pfam PF07691 PA14 domain 459 612 1.9E-30 T 31-10-2018 IPR011658 PA14 domain BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82693 135 330 4.88E-21 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1040 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.2090.10 715 810 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82714 716 809 5.1E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82693 563 664 8.89E-28 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 550 567 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 617 631 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.6E-99 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82693 665 858 8.37E-26 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Pfam PF00873 AcrB/AcrD/AcrF family 1 1028 0.0 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:1.20.1640.10 8 510 0.0 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82866 832 1028 1.57E-45 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.70.1440 662 867 0.0 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:1.20.1640.10 511 1024 0.0 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.70.1430 565 661 0.0 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82693 38 132 5.23E-27 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82714 182 271 3.4E-22 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 SUPERFAMILY SSF82866 296 497 2.49E-46 T 31-10-2018 BRM88_14820 55414a2a017d34b7db0134a51ca8939c 1056 Gene3D G3DSA:3.30.70.1430 38 818 0.0 T 31-10-2018 BRM88_08605 61ec035525b402670ca197600210745f 152 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 21 38 - T 31-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 BRM88_08605 61ec035525b402670ca197600210745f 152 Pfam PF03061 Thioesterase superfamily 30 114 3.1E-18 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BRM88_08605 61ec035525b402670ca197600210745f 152 PIRSF PIRSF003230 9 149 1.1E-39 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BRM88_08605 61ec035525b402670ca197600210745f 152 Gene3D G3DSA:3.10.129.10 2 145 5.2E-37 T 31-10-2018 BRM88_08605 61ec035525b402670ca197600210745f 152 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 19 131 5.3E-31 T 31-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BRM88_08605 61ec035525b402670ca197600210745f 152 SUPERFAMILY SSF54637 13 144 1.55E-38 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_08605 61ec035525b402670ca197600210745f 152 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 16 138 1.3E-50 T 31-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 BRM88_16590 5a46f252d771640938407e0cbd5c91f2 125 Gene3D G3DSA:1.20.1280.290 1 80 3.7E-8 T 31-10-2018 BRM88_10575 fdc2659c6b2aa423a86270bc7d0c8da1 302 SUPERFAMILY SSF53613 25 278 2.18E-55 T 31-10-2018 IPR029056 Ribokinase-like BRM88_10575 fdc2659c6b2aa423a86270bc7d0c8da1 302 Gene3D G3DSA:3.40.1190.20 23 301 1.4E-63 T 31-10-2018 IPR029056 Ribokinase-like BRM88_10575 fdc2659c6b2aa423a86270bc7d0c8da1 302 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 24 299 3.7E-51 T 31-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BRM88_10575 fdc2659c6b2aa423a86270bc7d0c8da1 302 Pfam PF08543 Phosphomethylpyrimidine kinase 114 276 2.0E-18 T 31-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BRM88_15060 90c62edab8d3565055d03bc388fc0502 130 SUPERFAMILY SSF56935 36 122 5.95E-10 T 31-10-2018 BRM88_15060 90c62edab8d3565055d03bc388fc0502 130 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 122 1.8E-4 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_15060 90c62edab8d3565055d03bc388fc0502 130 Gene3D G3DSA:2.170.130.10 48 129 1.3E-12 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_03940 7d7deb5f15497f9d9306c420442de66f 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_03940 7d7deb5f15497f9d9306c420442de66f 394 Pfam PF00872 Transposase, Mutator family 11 368 5.1E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 Pfam PF07963 Prokaryotic N-terminal methylation motif 21 44 1.1E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 45 133 4.2E-25 T 31-10-2018 IPR031982 Type IV minor pilin ComP BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 SUPERFAMILY SSF54523 24 141 1.26E-28 T 31-10-2018 BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 22 44 5.8E-9 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 22 42 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 Gene3D G3DSA:3.30.700.10 24 150 1.9E-27 T 31-10-2018 BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 PRINTS PR00813 Bacterial general secretion pathway protein G signature 59 77 9.1E-10 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BRM88_17090 2f15cee066d535f99eefbe8438cf3422 151 PRINTS PR00813 Bacterial general secretion pathway protein G signature 23 48 9.1E-10 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 SUPERFAMILY SSF109604 170 356 2.04E-41 T 31-10-2018 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 Pfam PF01966 HD domain 202 319 4.9E-19 T 31-10-2018 IPR006674 HD domain BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 SMART SM00471 192 329 2.2E-6 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 Gene3D G3DSA:1.10.3210.10 171 372 1.5E-71 T 31-10-2018 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 Pfam PF00072 Response regulator receiver domain 30 142 8.4E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 Gene3D G3DSA:3.40.50.2300 15 163 9.5E-35 T 31-10-2018 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 SMART SM00448 28 143 5.2E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15305 af137d93e30174a14720d069bd1f34d6 378 SUPERFAMILY SSF52172 27 176 5.12E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 Pfam PF04225 Opacity-associated protein A LysM-like domain 101 168 4.7E-6 T 31-10-2018 IPR007340 Opacity-associated protein A BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 SUPERFAMILY SSF51261 177 423 2.41E-72 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 Gene3D G3DSA:3.10.450.350 200 442 1.3E-88 T 31-10-2018 BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 Gene3D G3DSA:3.10.450.350 91 182 6.6E-11 T 31-10-2018 BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 Pfam PF01551 Peptidase family M23 325 421 5.6E-34 T 31-10-2018 IPR016047 Peptidase M23 BRM88_02570 289e07772a1dd6a38b3d29bf557c1c66 472 Gene3D G3DSA:2.70.70.10 298 427 1.3E-88 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 Pfam PF08281 Sigma-70, region 4 102 153 1.9E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 Pfam PF04542 Sigma-70 region 2 10 73 2.9E-10 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 Gene3D G3DSA:1.10.10.10 83 159 7.2E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 SUPERFAMILY SSF88946 9 86 4.71E-14 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 154 3.4E-19 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 SUPERFAMILY SSF88659 97 156 5.67E-14 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_02210 8ffc4392cb67e2fbc0606d2348ee8541 171 Gene3D G3DSA:1.10.1740.10 4 67 1.1E-17 T 31-10-2018 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 PIRSF PIRSF002599 2 71 6.2E-22 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 20 38 - T 31-10-2018 IPR019844 Cold-shock conserved site BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 SMART SM00357 8 71 2.9E-27 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 Pfam PF00313 'Cold-shock' DNA-binding domain 8 70 1.9E-27 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 PRINTS PR00050 Cold shock protein signature 29 38 6.4E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 PRINTS PR00050 Cold shock protein signature 9 24 6.4E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 PRINTS PR00050 Cold shock protein signature 44 62 6.4E-18 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 SUPERFAMILY SSF50249 4 70 2.14E-23 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_07820 6e1fc5c9f1de30fe63a0c3ccc8baebf1 71 Gene3D G3DSA:2.40.50.140 8 71 1.7E-26 T 31-10-2018 BRM88_18615 f026cc28bac3e77934e7bbc00fd58be0 165 SUPERFAMILY SSF141452 1 159 1.03E-44 T 31-10-2018 IPR036624 Hcp1-like superfamily BRM88_18615 f026cc28bac3e77934e7bbc00fd58be0 165 Gene3D G3DSA:2.30.110.20 1 165 7.8E-51 T 31-10-2018 IPR036624 Hcp1-like superfamily BRM88_18615 f026cc28bac3e77934e7bbc00fd58be0 165 Pfam PF05638 Type VI secretion system effector, Hcp 5 137 1.1E-35 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp BRM88_18615 f026cc28bac3e77934e7bbc00fd58be0 165 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 7 143 1.1E-24 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp BRM88_02545 e4003ab0c900f62d464c76c5a738afe5 219 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 219 30.887 T 31-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_02545 e4003ab0c900f62d464c76c5a738afe5 219 Pfam PF00156 Phosphoribosyl transferase domain 50 158 1.2E-13 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BRM88_02545 e4003ab0c900f62d464c76c5a738afe5 219 SUPERFAMILY SSF53271 5 209 6.59E-42 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_02545 e4003ab0c900f62d464c76c5a738afe5 219 Gene3D G3DSA:3.40.50.2020 1 197 6.2E-67 T 31-10-2018 BRM88_02545 e4003ab0c900f62d464c76c5a738afe5 219 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 189 5.8E-55 T 31-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 Gene3D G3DSA:1.10.287.130 130 251 1.4E-24 T 31-10-2018 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 SUPERFAMILY SSF55874 252 404 3.8E-41 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 404 3.3E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 SUPERFAMILY SSF47384 149 189 8.24E-6 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 363 1.1E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 1.1E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 1.1E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 1.1E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 SMART SM00387 297 406 3.6E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 Pfam PF00512 His Kinase A (phospho-acceptor) domain 155 253 3.5E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_13500 f20d73e79925666f11106d3c10f9f0f0 408 Gene3D G3DSA:3.30.565.10 259 408 1.6E-43 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SMART SM00052 540 786 2.4E-49 T 31-10-2018 IPR001633 EAL domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 242 357 4.3E-14 T 31-10-2018 IPR000014 PAS domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 365 527 7.9E-37 T 31-10-2018 IPR000160 GGDEF domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 Pfam PF00990 Diguanylate cyclase, GGDEF domain 367 524 1.6E-38 T 31-10-2018 IPR000160 GGDEF domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SUPERFAMILY SSF55785 232 354 4.36E-15 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SMART SM00267 356 528 1.8E-50 T 31-10-2018 IPR000160 GGDEF domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SUPERFAMILY SSF55073 372 530 2.12E-43 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SUPERFAMILY SSF141868 547 789 6.67E-65 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 Gene3D G3DSA:3.30.70.270 361 530 7.7E-48 T 31-10-2018 BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 Pfam PF00563 EAL domain 547 781 9.1E-56 T 31-10-2018 IPR001633 EAL domain BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 Gene3D G3DSA:3.30.450.20 232 353 7.0E-14 T 31-10-2018 BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 Gene3D G3DSA:3.20.20.450 531 788 4.9E-69 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SMART SM00086 314 356 5.6E-4 T 31-10-2018 IPR001610 PAC motif BRM88_08010 3818a34fe8cdcbf8eb091bfbc6b9148d 798 SMART SM00091 244 310 9.4E-6 T 31-10-2018 IPR000014 PAS domain BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 8 243 16.092 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 13 230 1.9E-66 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 ProSitePatterns PS01218 TatC family signature. 158 177 - T 31-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 158 186 4.0E-44 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 89 107 4.0E-44 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 107 133 4.0E-44 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 12 39 4.0E-44 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_23415 feb52692c3c8eab592cde3d8056dd085 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 15 225 7.1E-65 T 31-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BRM88_08375 d513d0d67bc956d3d71ef2d9442e28dd 135 Gene3D G3DSA:3.10.129.10 1 135 1.2E-46 T 31-10-2018 BRM88_08375 d513d0d67bc956d3d71ef2d9442e28dd 135 Pfam PF13279 Thioesterase-like superfamily 15 132 7.5E-22 T 31-10-2018 BRM88_08375 d513d0d67bc956d3d71ef2d9442e28dd 135 SUPERFAMILY SSF54637 10 133 5.37E-35 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 15 1152 0.0 T 31-10-2018 IPR017731 Type VI secretion system, IcmF BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 SUPERFAMILY SSF52540 134 288 2.0E-10 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 Pfam PF06744 Type VI secretion protein IcmF C-terminal 908 1104 6.2E-44 T 31-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 Pfam PF06761 Intracellular multiplication and human macrophage-killing 511 808 1.1E-56 T 31-10-2018 IPR009612 ImcF-related BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 Gene3D G3DSA:3.40.50.300 128 301 1.3E-6 T 31-10-2018 BRM88_16235 a5ed2daba2cacffa0b6f336fbb7ef1d3 1152 Pfam PF14331 ImcF-related N-terminal domain 200 456 8.5E-88 T 31-10-2018 IPR025743 ImcF-related, N-terminal domain BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 ProSitePatterns PS00802 Transketolase signature 2. 428 444 - T 31-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Gene3D G3DSA:3.40.50.920 498 622 1.2E-36 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 ProSitePatterns PS00801 Transketolase signature 1. 35 54 - T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 11 620 5.0E-255 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Pfam PF02780 Transketolase, C-terminal domain 498 614 3.4E-23 T 31-10-2018 IPR033248 Transketolase, C-terminal domain BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Pfam PF02779 Transketolase, pyrimidine binding domain 321 481 8.8E-36 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 9 623 44.901 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Gene3D G3DSA:3.40.50.970 320 491 2.5E-62 T 31-10-2018 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 SUPERFAMILY SSF52518 7 384 5.73E-72 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 SMART SM00861 322 486 3.5E-58 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 SUPERFAMILY SSF52922 494 620 7.2E-27 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 10 285 5.7E-114 T 31-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_10490 a9ba3ade5f7877c937abdba6d09dceea 638 SUPERFAMILY SSF52518 320 507 4.71E-55 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_12205 45d383bf5a00715daec1793defdbf310 128 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 17 120 7.3E-29 T 31-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 BRM88_12205 45d383bf5a00715daec1793defdbf310 128 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 3 118 7.1E-16 T 31-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12205 45d383bf5a00715daec1793defdbf310 128 SUPERFAMILY SSF81343 12 123 2.09E-25 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12205 45d383bf5a00715daec1793defdbf310 128 Gene3D G3DSA:1.20.1300.10 12 123 1.5E-26 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Pfam PF13185 GAF domain 166 308 8.8E-10 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SUPERFAMILY SSF55073 326 482 2.12E-46 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SMART SM00086 106 148 2.7E-7 T 31-10-2018 IPR001610 PAC motif BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 152 4.2E-20 T 31-10-2018 IPR000014 PAS domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Gene3D G3DSA:3.30.450.40 172 317 2.6E-21 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 319 478 2.7E-36 T 31-10-2018 IPR000160 GGDEF domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Gene3D G3DSA:3.30.450.20 28 171 6.2E-34 T 31-10-2018 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SMART SM00052 491 738 2.2E-107 T 31-10-2018 IPR001633 EAL domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SMART SM00065 150 318 2.0E-4 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SMART SM00091 33 100 8.2E-8 T 31-10-2018 IPR000014 PAS domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 PIRSF PIRSF005925 22 747 0.0 T 31-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SMART SM00267 310 481 8.8E-60 T 31-10-2018 IPR000160 GGDEF domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Gene3D G3DSA:3.30.70.270 318 494 2.7E-53 T 31-10-2018 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SUPERFAMILY SSF55781 170 321 2.4E-20 T 31-10-2018 BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Gene3D G3DSA:3.20.20.450 495 746 1.2E-94 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SUPERFAMILY SSF141868 497 743 1.83E-82 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Pfam PF00990 Diguanylate cyclase, GGDEF domain 321 476 2.7E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Pfam PF00563 EAL domain 497 733 3.3E-72 T 31-10-2018 IPR001633 EAL domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 Pfam PF13426 PAS domain 44 147 8.4E-19 T 31-10-2018 IPR000014 PAS domain BRM88_15240 e6acfb7809f7898d03f4fa59998df3e9 747 SUPERFAMILY SSF55785 39 146 2.42E-23 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 Gene3D G3DSA:3.30.1330.10 1 141 1.1E-44 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 322 7.9E-105 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 Pfam PF00586 AIR synthase related protein, N-terminal domain 26 135 3.9E-22 T 31-10-2018 IPR016188 PurM-like, N-terminal domain BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 322 26.593 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 SUPERFAMILY SSF56042 140 308 7.48E-36 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 Pfam PF02769 AIR synthase related protein, C-terminal domain 148 305 6.3E-11 T 31-10-2018 IPR010918 PurM-like, C-terminal domain BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 PIRSF PIRSF005303 1 322 4.9E-82 T 31-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 Gene3D G3DSA:3.90.650.10 143 323 5.8E-52 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_20535 44dd52cc00dec909d0443d3fdab8f019 324 SUPERFAMILY SSF55326 3 135 7.85E-32 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_03015 bfbc1b40e4fe4b752dce36f13d1d9048 274 Gene3D G3DSA:3.90.550.10 1 248 6.2E-24 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03015 bfbc1b40e4fe4b752dce36f13d1d9048 274 SUPERFAMILY SSF53448 6 155 1.2E-22 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03015 bfbc1b40e4fe4b752dce36f13d1d9048 274 Pfam PF00535 Glycosyl transferase family 2 14 120 7.8E-16 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF00575 S1 RNA binding domain 620 691 1.5E-20 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF55666 451 550 9.96E-29 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF55666 144 234 6.45E-28 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 5.9E-21 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 5.2E-18 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF00013 KH domain 558 614 8.2E-10 T 31-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF54211 4 143 2.48E-48 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF03725 3' exoribonuclease family, domain 2 460 529 8.9E-7 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF03725 3' exoribonuclease family, domain 2 146 209 1.7E-9 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 694 30.401 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SMART SM00316 621 691 4.9E-26 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 693 0.0 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Gene3D G3DSA:3.30.230.70 1 229 7.4E-78 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Gene3D G3DSA:3.30.230.70 232 550 4.9E-115 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF46915 225 327 8.11E-18 T 31-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF50249 609 695 2.91E-22 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 PIRSF PIRSF005499 1 704 9.0E-294 T 31-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SMART SM00322 553 618 3.8E-12 T 31-10-2018 IPR004087 K Homology domain GO:0003676 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF54791 553 630 2.43E-17 T 31-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Gene3D G3DSA:3.30.1370.10 551 622 1.5E-19 T 31-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Gene3D G3DSA:2.40.50.140 623 695 7.3E-29 T 31-10-2018 BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 SUPERFAMILY SSF54211 305 493 4.15E-47 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_17180 7f0aaf44fc2a6acc808da598cd82fbe9 704 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 244 320 2.6E-12 T 31-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 SUPERFAMILY SSF54534 128 242 1.94E-16 T 31-10-2018 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Pfam PF05697 Bacterial trigger factor protein (TF) 1 140 5.1E-35 T 31-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 260 413 3.4E-36 T 31-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Gene3D G3DSA:3.30.70.1050 1 110 3.4E-31 T 31-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Hamap MF_00303 Trigger factor [tig]. 1 418 17.437 T 31-10-2018 IPR005215 Trigger factor GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Gene3D G3DSA:3.10.50.40 146 242 4.4E-67 T 31-10-2018 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 TIGRFAM TIGR00115 tig: trigger factor 11 411 1.0E-106 T 31-10-2018 IPR005215 Trigger factor GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 SUPERFAMILY SSF109998 244 428 9.94E-38 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 SUPERFAMILY SSF102735 1 125 1.57E-30 T 31-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 Gene3D G3DSA:1.10.3120.10 115 416 4.4E-67 T 31-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 BRM88_05175 24ba8c4a8f6fb7a1bff15421f045722f 430 PIRSF PIRSF003095 1 428 5.8E-101 T 31-10-2018 IPR005215 Trigger factor GO:0015031 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 Gene3D G3DSA:2.30.40.10 11 381 5.0E-122 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 PIRSF PIRSF038994 5 384 5.4E-111 T 31-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 Pfam PF01979 Amidohydrolase family 57 382 1.0E-26 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 7 381 2.1E-95 T 31-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 SUPERFAMILY SSF51556 61 355 2.18E-94 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 Gene3D G3DSA:3.20.20.140 62 349 5.0E-122 T 31-10-2018 BRM88_20900 6b5816a3f3c13f5dc93980ba620e7b80 384 SUPERFAMILY SSF51338 8 382 4.73E-13 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 SMART SM00382 29 212 5.2E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 Gene3D G3DSA:3.40.50.300 3 222 8.2E-62 T 31-10-2018 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 SUPERFAMILY SSF50331 237 359 4.13E-29 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 SUPERFAMILY SSF52540 4 243 9.69E-82 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 Pfam PF00005 ABC transporter 21 162 1.4E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 Gene3D G3DSA:2.40.50.940 223 352 8.4E-30 T 31-10-2018 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 Gene3D G3DSA:2.40.50.140 288 343 8.4E-30 T 31-10-2018 BRM88_12230 e988652a5be4e3afec2162fa649a7a8f 365 Pfam PF08402 TOBE domain 281 351 2.5E-8 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.30.470.20 490 704 2.6E-66 T 31-10-2018 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 152 289 8.8E-48 T 31-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SUPERFAMILY SSF55729 743 879 2.06E-19 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Pfam PF13302 Acetyltransferase (GNAT) domain 743 877 4.2E-9 T 31-10-2018 IPR000182 GNAT domain BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SMART SM00881 9 104 2.9E-16 T 31-10-2018 IPR003781 CoA-binding GO:0048037 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SUPERFAMILY SSF56059 492 706 5.16E-30 T 31-10-2018 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.40.50.261 296 462 1.3E-45 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.30.1490.20 508 588 2.6E-66 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SUPERFAMILY SSF51735 1 139 6.04E-29 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SUPERFAMILY SSF52210 132 291 2.62E-36 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.40.630.30 733 896 6.9E-39 T 31-10-2018 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Pfam PF13549 ATP-grasp domain 482 706 2.7E-74 T 31-10-2018 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 SUPERFAMILY SSF52210 297 453 3.53E-37 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.40.50.720 4 130 2.6E-30 T 31-10-2018 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Gene3D G3DSA:3.40.50.261 131 290 8.2E-50 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_02360 89bd443e48c2553c06a9833d8adffcf4 902 Pfam PF13380 CoA binding domain 14 135 8.5E-19 T 31-10-2018 IPR003781 CoA-binding GO:0048037 BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 Gene3D G3DSA:3.40.630.40 150 389 1.0E-66 T 31-10-2018 BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 Pfam PF11741 AMIN domain 38 124 4.9E-10 T 31-10-2018 IPR021731 AMIN domain BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 SMART SM00646 224 382 4.0E-51 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 SUPERFAMILY SSF53187 162 385 3.45E-49 T 31-10-2018 BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 Gene3D G3DSA:2.60.40.3500 19 127 4.4E-12 T 31-10-2018 BRM88_12555 f29af4122730d8ee5c4af644ac0be087 392 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 164 382 1.7E-42 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BRM88_22250 68346d582e33f3d9e7c273e8dc33e817 743 SUPERFAMILY SSF53659 4 741 0.0 T 31-10-2018 BRM88_22250 68346d582e33f3d9e7c273e8dc33e817 743 PIRSF PIRSF009407 1 742 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BRM88_22250 68346d582e33f3d9e7c273e8dc33e817 743 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BRM88_22250 68346d582e33f3d9e7c273e8dc33e817 743 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 742 0.0 T 31-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BRM88_22250 68346d582e33f3d9e7c273e8dc33e817 743 Gene3D G3DSA:3.40.718.10 403 649 2.9E-7 T 31-10-2018 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 Gene3D G3DSA:1.10.275.10 1 117 1.6E-44 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 Pfam PF00206 Lyase 14 312 7.4E-62 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 Gene3D G3DSA:1.20.200.10 118 446 1.1E-150 T 31-10-2018 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 451 2.8E-119 T 31-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 9.6E-48 T 31-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 SUPERFAMILY SSF48557 10 452 3.14E-103 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 Gene3D G3DSA:1.10.40.30 382 445 1.1E-150 T 31-10-2018 BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 2.3E-17 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.3E-17 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 2.3E-17 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10670 4138485acb9fe0aacefc5b3192293d47 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 2.3E-17 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 Pfam PF01687 Riboflavin kinase 185 306 4.1E-36 T 31-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 PIRSF PIRSF004491 7 314 9.8E-90 T 31-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 Gene3D G3DSA:3.40.50.620 12 186 1.3E-48 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 Pfam PF06574 FAD synthetase 16 168 1.1E-42 T 31-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 Gene3D G3DSA:2.40.30.30 187 320 1.2E-40 T 31-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 SMART SM00904 184 307 3.6E-62 T 31-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 SUPERFAMILY SSF82114 175 308 5.23E-43 T 31-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 306 1.1E-73 T 31-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BRM88_08410 e42687f16fc2c564c4b4fc940f45995c 338 SUPERFAMILY SSF52374 19 176 5.63E-27 T 31-10-2018 BRM88_05425 e1506b765372ea185963d24e9d042d6c 318 Pfam PF01882 Protein of unknown function DUF58 211 288 9.7E-15 T 31-10-2018 IPR002881 Domain of unknown function DUF58 BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 147 17.089 T 31-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 Gene3D G3DSA:3.100.10.10 73 147 3.1E-11 T 31-10-2018 BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 SUPERFAMILY SSF52080 6 146 7.59E-38 T 31-10-2018 IPR036227 Ribosomal L18e/L15P superfamily BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 146 2.5E-43 T 31-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 ProSitePatterns PS00475 Ribosomal protein L15 signature. 112 142 - T 31-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19020 fd2ef71b6ed7ecfc11a0f758bcade7ea 147 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 146 9.0E-26 T 31-10-2018 IPR021131 Ribosomal protein L18e/L15P BRM88_17295 b7788b9b565820928a6d68002c15323b 153 PRINTS PR01651 Protein-export SecG membrane protein signature 55 77 4.3E-35 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_17295 b7788b9b565820928a6d68002c15323b 153 PRINTS PR01651 Protein-export SecG membrane protein signature 39 55 4.3E-35 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_17295 b7788b9b565820928a6d68002c15323b 153 PRINTS PR01651 Protein-export SecG membrane protein signature 24 38 4.3E-35 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_17295 b7788b9b565820928a6d68002c15323b 153 PRINTS PR01651 Protein-export SecG membrane protein signature 4 24 4.3E-35 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_17295 b7788b9b565820928a6d68002c15323b 153 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 4.2E-22 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_17295 b7788b9b565820928a6d68002c15323b 153 Pfam PF03840 Preprotein translocase SecG subunit 5 72 6.8E-19 T 31-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BRM88_14230 dfb30458179de489d7962d4ca5026e63 239 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 239 38.036 T 31-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 BRM88_14230 dfb30458179de489d7962d4ca5026e63 239 SUPERFAMILY SSF53335 18 234 1.07E-51 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_14230 dfb30458179de489d7962d4ca5026e63 239 Pfam PF13489 Methyltransferase domain 53 207 1.3E-26 T 31-10-2018 BRM88_14230 dfb30458179de489d7962d4ca5026e63 239 Gene3D G3DSA:3.40.50.150 16 238 5.8E-79 T 31-10-2018 BRM88_14230 dfb30458179de489d7962d4ca5026e63 239 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 233 1.2E-90 T 31-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 BRM88_06805 dbfcbfcb53e0c909a35f96d6cb8a6a90 496 PIRSF PIRSF006603 1 457 6.0E-108 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_06805 dbfcbfcb53e0c909a35f96d6cb8a6a90 496 Pfam PF01554 MatE 254 411 8.1E-22 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_06805 dbfcbfcb53e0c909a35f96d6cb8a6a90 496 Pfam PF01554 MatE 22 183 4.6E-30 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_06805 dbfcbfcb53e0c909a35f96d6cb8a6a90 496 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 424 1.0E-69 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 Gene3D G3DSA:2.60.300.12 1 100 1.9E-8 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 120 179 4.0E-28 T 31-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 Pfam PF01106 NifU-like domain 115 179 9.9E-20 T 31-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 Gene3D G3DSA:3.30.300.130 102 189 1.6E-22 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 193 39.502 T 31-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 SUPERFAMILY SSF117916 103 186 8.28E-23 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BRM88_16400 d1f0b480839b2b65a91cc9989a2780e8 199 SUPERFAMILY SSF89360 1 99 6.08E-15 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_16685 67eca940bf6ab73ce4c32e5e125ee236 528 Pfam PF04616 Glycosyl hydrolases family 43 46 332 1.8E-39 T 31-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 BRM88_16685 67eca940bf6ab73ce4c32e5e125ee236 528 Gene3D G3DSA:2.60.120.260 352 510 1.5E-29 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_16685 67eca940bf6ab73ce4c32e5e125ee236 528 SUPERFAMILY SSF75005 38 352 1.86E-59 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_16685 67eca940bf6ab73ce4c32e5e125ee236 528 Gene3D G3DSA:2.115.10.20 33 349 3.4E-79 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 Gene3D G3DSA:3.90.180.10 20 323 2.6E-97 T 31-10-2018 BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 90 3.4E-6 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 Pfam PF13602 Zinc-binding dehydrogenase 186 323 1.7E-28 T 31-10-2018 BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 SUPERFAMILY SSF50129 12 141 4.41E-35 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 Gene3D G3DSA:3.40.50.720 123 262 2.6E-97 T 31-10-2018 BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 SUPERFAMILY SSF51735 114 288 1.95E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 SMART SM00829 16 323 2.5E-33 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_20320 a5bb039b070512dae95b1c59e9ff4f35 325 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 6 324 4.4E-129 T 31-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 SUPERFAMILY SSF81464 30 117 4.09E-23 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 17 238 6.1E-116 T 31-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 SUPERFAMILY SSF49503 119 283 2.84E-48 T 31-10-2018 IPR008972 Cupredoxin BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 Gene3D G3DSA:1.10.287.90 27 112 3.0E-34 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 148 220 6.5E-7 T 31-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 Gene3D G3DSA:2.60.40.420 113 283 5.0E-55 T 31-10-2018 IPR008972 Cupredoxin BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 PIRSF PIRSF000292 4 308 4.2E-131 T 31-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BRM88_08435 cb22a83d9c4faced87fd0de5ac2723f2 311 Pfam PF06481 COX Aromatic Rich Motif 238 285 7.9E-16 T 31-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 BRM88_18445 e374bdb5ac99523b6f9e238760a26130 144 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 7 140 2.5E-38 T 31-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 BRM88_18445 e374bdb5ac99523b6f9e238760a26130 144 Gene3D G3DSA:1.20.120.330 1 144 1.8E-49 T 31-10-2018 BRM88_18445 e374bdb5ac99523b6f9e238760a26130 144 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 17 140 4.3E-31 T 31-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 BRM88_18445 e374bdb5ac99523b6f9e238760a26130 144 SUPERFAMILY SSF81593 13 139 1.22E-36 T 31-10-2018 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 Gene3D G3DSA:3.90.226.10 327 550 4.3E-154 T 31-10-2018 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 358 547 5.2E-49 T 31-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 Gene3D G3DSA:3.40.1750.10 189 507 4.3E-154 T 31-10-2018 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 SUPERFAMILY SSF52096 42 290 1.04E-15 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 18 578 6.8E-163 T 31-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 Gene3D G3DSA:3.90.226.10 98 326 4.3E-154 T 31-10-2018 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 PIRSF PIRSF001217 10 633 5.4E-210 T 31-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 Pfam PF01343 Peptidase family S49 400 551 1.4E-46 T 31-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 Pfam PF01343 Peptidase family S49 142 293 3.2E-22 T 31-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BRM88_02930 23843322b3bb5d2e8f6720688416c15b 633 SUPERFAMILY SSF52096 330 537 4.26E-40 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 SUPERFAMILY SSF54565 1 78 1.05E-28 T 31-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 31-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 8.6E-31 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.474 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 Gene3D G3DSA:3.30.1320.10 1 84 9.7E-30 T 31-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06780 549ea40792c4de542d3ea86ee843153f 85 Pfam PF00886 Ribosomal protein S16 8 68 8.7E-24 T 31-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 148 3.4E-47 T 31-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 PIRSF PIRSF000445 1 417 4.7E-146 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 410 29.264 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 SUPERFAMILY SSF51735 154 306 8.71E-32 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 164 297 7.0E-47 T 31-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 312 407 4.7E-18 T 31-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 SUPERFAMILY SSF69742 1 149 9.15E-47 T 31-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 91 114 - T 31-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Gene3D G3DSA:3.30.460.30 1 150 9.8E-52 T 31-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 401 1.4E-122 T 31-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 SUPERFAMILY SSF69075 309 409 8.63E-23 T 31-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BRM88_19265 0db6e18142c2519ad4296ebfc1db2e40 432 Gene3D G3DSA:3.40.50.720 154 305 2.4E-43 T 31-10-2018 BRM88_07385 bec0c40d0b2db5b22c9c279ca0be36bf 264 Pfam PF01738 Dienelactone hydrolase family 50 260 5.7E-35 T 31-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BRM88_07385 bec0c40d0b2db5b22c9c279ca0be36bf 264 SUPERFAMILY SSF53474 30 260 5.86E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_07385 bec0c40d0b2db5b22c9c279ca0be36bf 264 Gene3D G3DSA:3.40.50.1820 19 263 1.2E-50 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Pfam PF00072 Response regulator receiver domain 3 113 3.4E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Gene3D G3DSA:1.10.10.10 123 225 8.2E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SMART SM00862 145 220 6.1E-26 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 3.7E-24 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 Gene3D G3DSA:3.40.50.2300 1 121 6.6E-41 T 31-10-2018 BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SUPERFAMILY SSF52172 1 170 1.03E-39 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_02055 ae52e0c9dbcb2eb6c03e20b9f1fb05a8 227 SMART SM00448 1 112 5.0E-41 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 295 1.5E-20 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 Gene3D G3DSA:2.40.30.170 61 305 3.3E-86 T 31-10-2018 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 377 3.2E-83 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 Gene3D G3DSA:2.40.50.100 74 216 3.3E-86 T 31-10-2018 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 Gene3D G3DSA:1.10.287.470 109 182 3.3E-86 T 31-10-2018 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 Gene3D G3DSA:2.40.420.20 306 375 3.3E-86 T 31-10-2018 BRM88_22335 b1400885b794a1e2afc69fd8a0027751 414 SUPERFAMILY SSF111369 64 300 3.4E-57 T 31-10-2018 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 Gene3D G3DSA:3.40.50.2020 151 294 4.0E-127 T 31-10-2018 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 317 1.7E-115 T 31-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 Pfam PF14572 Phosphoribosyl synthetase-associated domain 208 317 2.3E-30 T 31-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 31-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 Gene3D G3DSA:3.40.50.2020 10 306 4.0E-127 T 31-10-2018 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 7 318 48.369 T 31-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 123 3.7E-46 T 31-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 SUPERFAMILY SSF53271 72 307 5.81E-61 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_19240 c0d5617d436c92cfa8e1280e19e2dbf6 319 SMART SM01400 7 124 4.3E-68 T 31-10-2018 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 9 258 2.6E-82 T 31-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 Gene3D G3DSA:1.10.8.100 197 260 9.5E-20 T 31-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 39 66 - T 31-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 Gene3D G3DSA:3.40.50.150 4 195 4.4E-64 T 31-10-2018 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 258 9.8E-62 T 31-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 7 261 54.804 T 31-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 SUPERFAMILY SSF53335 15 259 2.89E-73 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_20005 671ee29fd4d8de646faaa04dfa5b2b73 262 SMART SM00650 23 194 8.0E-80 T 31-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.1E-22 T 31-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 SMART SM00649 9 141 2.7E-80 T 31-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 SUPERFAMILY SSF54747 4 72 5.49E-28 T 31-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BRM88_19180 794bcea43af024fc95b738517ed2500a 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 31-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 Gene3D G3DSA:3.30.1550.10 2 72 8.6E-33 T 31-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BRM88_19180 794bcea43af024fc95b738517ed2500a 142 Gene3D G3DSA:1.10.10.2720 73 142 9.6E-26 T 31-10-2018 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 72 3.0E-15 T 31-10-2018 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 29.919 T 31-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 SUPERFAMILY SSF46906 68 141 1.26E-23 T 31-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BRM88_19180 794bcea43af024fc95b738517ed2500a 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 4 141 8.1E-63 T 31-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19180 794bcea43af024fc95b738517ed2500a 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.3E-28 T 31-10-2018 IPR020784 Ribosomal protein L11, N-terminal BRM88_13435 c310f4d5435162859447fc21855e154e 250 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 40 210 3.9E-69 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BRM88_13435 c310f4d5435162859447fc21855e154e 250 Gene3D G3DSA:2.30.210.20 8 66 1.9E-26 T 31-10-2018 BRM88_13435 c310f4d5435162859447fc21855e154e 250 SUPERFAMILY SSF55729 11 233 4.34E-86 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_13435 c310f4d5435162859447fc21855e154e 250 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 224 2.0E-58 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BRM88_13435 c310f4d5435162859447fc21855e154e 250 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 250 94.593 T 31-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BRM88_13435 c310f4d5435162859447fc21855e154e 250 Gene3D G3DSA:3.40.630.70 67 246 6.8E-61 T 31-10-2018 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 Gene3D G3DSA:2.40.50.140 4 68 2.1E-27 T 31-10-2018 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 5.5E-28 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 PIRSF PIRSF002599 1 69 2.9E-21 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 SUPERFAMILY SSF50249 2 68 8.14E-24 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 SMART SM00357 6 69 3.3E-27 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 31-10-2018 IPR019844 Cold-shock conserved site BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 PRINTS PR00050 Cold shock protein signature 7 22 8.9E-16 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 PRINTS PR00050 Cold shock protein signature 42 60 8.9E-16 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_14330 068b985dbb38d64f9190adc3907d93f0 69 PRINTS PR00050 Cold shock protein signature 27 36 8.9E-16 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_01590 af5b3896543070563433e1b6051d59b4 584 Gene3D G3DSA:2.140.10.10 60 459 2.4E-61 T 31-10-2018 BRM88_01590 af5b3896543070563433e1b6051d59b4 584 Gene3D G3DSA:2.140.10.10 460 582 1.5E-13 T 31-10-2018 BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SUPERFAMILY SSF50998 466 573 2.09E-17 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BRM88_01590 af5b3896543070563433e1b6051d59b4 584 Pfam PF13360 PQQ-like domain 232 420 6.0E-6 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 Pfam PF13360 PQQ-like domain 465 565 3.2E-11 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 Pfam PF13360 PQQ-like domain 48 217 7.5E-19 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SUPERFAMILY SSF50998 63 494 2.75E-68 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 158 190 4.5E-4 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 378 414 160.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 429 479 31.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 110 142 7.9E-4 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 497 529 9.4E-5 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_01590 af5b3896543070563433e1b6051d59b4 584 SMART SM00564 203 249 0.002 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.619 T 31-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 Gene3D G3DSA:3.50.30.80 419 571 9.5E-55 T 31-10-2018 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 SUPERFAMILY SSF143975 4 418 3.66E-133 T 31-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 Pfam PF00920 Dehydratase family 34 603 1.7E-216 T 31-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 2.0E-247 T 31-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_22560 f73638348cd63084b9d52c4faff462ac 612 SUPERFAMILY SSF52016 419 607 1.8E-60 T 31-10-2018 BRM88_13045 80287b3f72f82f6f5c85eb44642a9428 135 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 81 132 3.0E-24 T 31-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB BRM88_13045 80287b3f72f82f6f5c85eb44642a9428 135 Gene3D G3DSA:3.10.450.160 65 135 1.3E-7 T 31-10-2018 BRM88_13045 80287b3f72f82f6f5c85eb44642a9428 135 Pfam PF11776 Nickel/cobalt transporter regulator 82 127 1.8E-13 T 31-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 SUPERFAMILY SSF56935 34 811 5.49E-104 T 31-10-2018 BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 Pfam PF00593 TonB dependent receptor 292 797 2.5E-44 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 171 7.2E-22 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 41 - T 31-10-2018 IPR010916 TonB box, conserved site BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 Gene3D G3DSA:2.40.170.20 276 784 5.5E-56 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_08300 edcc0afedc2909aa4fcfd18ec7c1c97e 811 Gene3D G3DSA:2.170.130.10 29 175 8.6E-34 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 SUPERFAMILY SSF53383 470 966 2.92E-99 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Pfam PF02347 Glycine cleavage system P-protein 19 440 1.7E-176 T 31-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Pfam PF02347 Glycine cleavage system P-protein 446 728 2.9E-12 T 31-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 11 971 25.736 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 20 965 0.0 T 31-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Gene3D G3DSA:3.40.640.10 520 742 7.6E-61 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Gene3D G3DSA:3.40.640.10 98 356 5.4E-106 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 SUPERFAMILY SSF53383 20 439 5.01E-102 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_18935 74d91cb6b4f32cd10dbde11a0d784509 984 Gene3D G3DSA:3.90.1150.10 779 919 4.9E-40 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Pfam PF00270 DEAD/DEAH box helicase 22 177 1.5E-17 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Gene3D G3DSA:1.10.10.10 333 518 4.5E-53 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 597 6.9E-266 T 31-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Gene3D G3DSA:1.10.150.80 522 598 5.0E-21 T 31-10-2018 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Pfam PF00271 Helicase conserved C-terminal domain 219 322 9.1E-14 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SMART SM00487 14 210 3.8E-25 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Pfam PF00570 HRDC domain 528 594 3.7E-21 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SMART SM00956 404 507 1.3E-56 T 31-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 456 2.4E-154 T 31-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SUPERFAMILY SSF47819 523 596 2.62E-21 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SMART SM00490 242 323 5.9E-23 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Gene3D G3DSA:3.40.50.300 201 332 2.5E-36 T 31-10-2018 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SUPERFAMILY SSF52540 200 451 2.26E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SUPERFAMILY SSF52540 5 189 4.89E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Gene3D G3DSA:3.40.50.300 1 200 6.7E-81 T 31-10-2018 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 SMART SM00341 524 597 2.2E-9 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Pfam PF16124 RecQ zinc-binding 335 397 7.2E-20 T 31-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BRM88_08995 c1faf225b00b6eb18c7a71a7ff88e81e 598 Pfam PF09382 RQC domain 401 507 9.8E-42 T 31-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BRM88_06430 3109e163f2475b43c663497004cc81ab 668 Gene3D G3DSA:1.10.390.60 341 571 1.1E-28 T 31-10-2018 BRM88_06430 3109e163f2475b43c663497004cc81ab 668 Pfam PF01433 Peptidase family M1 domain 414 567 1.2E-13 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_06430 3109e163f2475b43c663497004cc81ab 668 SUPERFAMILY SSF55486 344 570 2.73E-39 T 31-10-2018 BRM88_10075 d2f7479cd6406286e1c9ad81472cf216 149 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 148 1.2E-33 T 31-10-2018 IPR019223 Domain of unknown function DUF2147 BRM88_10075 d2f7479cd6406286e1c9ad81472cf216 149 Gene3D G3DSA:2.40.128.520 28 149 2.5E-20 T 31-10-2018 BRM88_16935 feddce07954f6cd8d3be6c6d7e818d66 326 Pfam PF01963 TraB family 41 324 2.1E-26 T 31-10-2018 IPR002816 Pheromone shutdown, TraB BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 Gene3D G3DSA:3.20.20.140 1 265 6.3E-96 T 31-10-2018 BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 SUPERFAMILY SSF51556 3 261 6.81E-82 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 PIRSF PIRSF005902 1 264 2.1E-72 T 31-10-2018 IPR001130 TatD family GO:0016788 BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 Pfam PF01026 TatD related DNase 4 259 1.8E-70 T 31-10-2018 IPR001130 TatD family GO:0016788 BRM88_23140 61b7d053678af1d8f4bd3975cbc0bff1 270 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 181 481 1.8E-118 T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 SUPERFAMILY SSF53187 175 488 6.91E-119 T 31-10-2018 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 5 490 35.491 T 31-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 SUPERFAMILY SSF52949 4 179 2.71E-39 T 31-10-2018 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 Gene3D G3DSA:3.40.220.10 3 161 3.4E-44 T 31-10-2018 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 Gene3D G3DSA:3.40.630.10 174 490 2.8E-141 T 31-10-2018 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 PRINTS PR00481 Cytosol aminopeptidase signature 366 381 1.2E-50 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 PRINTS PR00481 Cytosol aminopeptidase signature 338 358 1.2E-50 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 PRINTS PR00481 Cytosol aminopeptidase signature 316 337 1.2E-50 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 PRINTS PR00481 Cytosol aminopeptidase signature 257 274 1.2E-50 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 PRINTS PR00481 Cytosol aminopeptidase signature 279 300 1.2E-50 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 342 349 - T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BRM88_04185 5692d120f8ff9f0a6d5452235970a372 490 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 21 145 4.8E-30 T 31-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BRM88_06525 fa2652c4724bc8329ff8dcc97f88a69d 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 326 3.5E-92 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BRM88_06525 fa2652c4724bc8329ff8dcc97f88a69d 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 333 1.8E-43 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 11 81 1.6E-34 T 31-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 PRINTS PR00973 Ribosomal protein S17 family signature 61 71 5.4E-11 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 PRINTS PR00973 Ribosomal protein S17 family signature 29 52 5.4E-11 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 PRINTS PR00973 Ribosomal protein S17 family signature 71 78 5.4E-11 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 Pfam PF00366 Ribosomal protein S17 15 82 6.5E-32 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 Gene3D G3DSA:2.40.50.140 6 88 4.3E-34 T 31-10-2018 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 7 85 23.631 T 31-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 SUPERFAMILY SSF50249 11 86 4.2E-31 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_19070 bdc6ff9c112b137ea417084d4c0ce2e4 89 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 11 81 9.0E-36 T 31-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 2.1E-23 T 31-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 103 136 3.7E-5 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 221 256 4.6E-6 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 140 178 8.5E-4 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 SUPERFAMILY SSF51161 32 316 4.47E-78 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Gene3D G3DSA:2.160.10.10 98 308 1.6E-61 T 31-10-2018 BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 328 1.4E-124 T 31-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Gene3D G3DSA:3.40.1390.10 1 96 9.3E-29 T 31-10-2018 BRM88_10260 c2583cd2b424b10e501a2cc55a0ccb6d 337 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 4 325 36.108 T 31-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Pfam PF09179 TilS substrate binding domain 243 310 4.7E-10 T 31-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 SMART SM00977 354 427 1.0E-14 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 SUPERFAMILY SSF56037 318 419 1.94E-19 T 31-10-2018 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 SUPERFAMILY SSF52402 13 223 1.35E-56 T 31-10-2018 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Gene3D G3DSA:3.40.50.620 11 227 3.2E-66 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Pfam PF11734 TilS substrate C-terminal domain 356 427 1.3E-15 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Gene3D G3DSA:1.20.59.20 229 313 2.5E-11 T 31-10-2018 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 357 399 8.4E-13 T 31-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 302 22.466 T 31-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 SUPERFAMILY SSF82829 233 313 5.49E-16 T 31-10-2018 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 Pfam PF01171 PP-loop family 17 194 5.6E-54 T 31-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 BRM88_17600 40322b3a0874b37f0bbe2c5440384408 434 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 17 198 5.3E-48 T 31-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 Gene3D G3DSA:2.40.37.10 8 352 6.6E-127 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 SMART SM01005 232 355 7.2E-60 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 SUPERFAMILY SSF51419 8 233 1.01E-69 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 3.9E-38 T 31-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 TIGRFAM TIGR00492 alr: alanine racemase 2 355 1.7E-105 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 265 280 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 154 165 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 286 303 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 248 263 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 60 78 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 25 41 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 120 132 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 PRINTS PR00992 Alanine racemase signature 191 218 8.3E-60 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 31-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 1.1E-65 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 Hamap MF_01201 Alanine racemase. 1 355 34.493 T 31-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 SUPERFAMILY SSF50621 226 356 6.98E-44 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_03460 07018c37dac79160d00dfa7ac6cdda45 366 Gene3D G3DSA:3.20.20.10 10 216 6.6E-127 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_07220 4697b9c389f2402cec20ed7255cf0bb3 126 Pfam PF01965 DJ-1/PfpI family 12 116 8.6E-30 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BRM88_07220 4697b9c389f2402cec20ed7255cf0bb3 126 SUPERFAMILY SSF52317 26 118 3.57E-27 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_07220 4697b9c389f2402cec20ed7255cf0bb3 126 Gene3D G3DSA:3.40.50.880 6 121 2.3E-30 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Pfam PF01751 Toprim domain 429 534 3.0E-17 T 31-10-2018 IPR006171 TOPRIM domain BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 SUPERFAMILY SSF55874 15 220 4.22E-68 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Gene3D G3DSA:3.40.50.670 408 577 2.7E-70 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Gene3D G3DSA:3.40.50.670 700 814 2.0E-25 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Gene3D G3DSA:3.30.565.10 12 230 4.3E-86 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Gene3D G3DSA:3.30.230.10 231 402 4.3E-71 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 515 532 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 535 547 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 430 444 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 80 93 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 123 137 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 278 291 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 45 60 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 746 762 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR00418 DNA topoisomerase II family signature 497 513 3.2E-70 T 31-10-2018 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 SUPERFAMILY SSF56719 404 805 4.97E-83 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 SMART SM00387 41 185 6.0E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 SMART SM00433 45 807 2.2E-251 T 31-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 15 814 2.1E-294 T 31-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 12 814 97.15 T 31-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 230 252 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 370 384 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 205 218 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 480 489 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 767 779 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 384 404 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 190 205 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 15 25 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 783 799 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 PRINTS PR01159 DNA gyrase subunit B signature 322 338 1.7E-73 T 31-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 742 803 2.0E-29 T 31-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 182 7.1E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 ProSitePatterns PS00177 DNA topoisomerase II signature. 432 440 - T 31-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 SUPERFAMILY SSF54211 231 401 4.74E-56 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_00025 9863f63dcb7a644cefff80258b79d266 814 Pfam PF00204 DNA gyrase B 231 400 2.3E-57 T 31-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_04685 3f8a9ec7f4dd23cfb56d0f171f81ac65 65 Pfam PF10276 Zinc-finger domain 25 61 1.7E-8 T 31-10-2018 IPR019401 Zinc finger, CHCC-type Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_04685 3f8a9ec7f4dd23cfb56d0f171f81ac65 65 Gene3D G3DSA:2.60.260.40 10 63 1.9E-10 T 31-10-2018 BRM88_16020 337021fce91383dba9cb573dca168e48 193 Pfam PF04542 Sigma-70 region 2 30 93 4.1E-7 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_16020 337021fce91383dba9cb573dca168e48 193 Pfam PF04545 Sigma-70, region 4 129 177 3.1E-11 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BRM88_16020 337021fce91383dba9cb573dca168e48 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 178 1.1E-19 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_16020 337021fce91383dba9cb573dca168e48 193 Gene3D G3DSA:1.10.10.10 121 179 5.2E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_16020 337021fce91383dba9cb573dca168e48 193 SUPERFAMILY SSF88659 95 179 1.42E-15 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_16020 337021fce91383dba9cb573dca168e48 193 SUPERFAMILY SSF88946 6 115 4.32E-21 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_16020 337021fce91383dba9cb573dca168e48 193 Gene3D G3DSA:1.10.1740.10 5 120 2.1E-20 T 31-10-2018 BRM88_23325 663a35337e8859eda7dbe2c7332bb053 441 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 263 416 5.6E-22 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BRM88_23325 663a35337e8859eda7dbe2c7332bb053 441 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 217 1.7E-56 T 31-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BRM88_23325 663a35337e8859eda7dbe2c7332bb053 441 SMART SM00833 263 416 5.3E-42 T 31-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BRM88_23325 663a35337e8859eda7dbe2c7332bb053 441 SUPERFAMILY SSF52540 7 315 2.43E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23325 663a35337e8859eda7dbe2c7332bb053 441 Gene3D G3DSA:3.40.50.300 9 236 3.5E-71 T 31-10-2018 BRM88_03515 9d9a6a3e3fec8c8552b64f46ead30cea 355 Pfam PF05175 Methyltransferase small domain 177 345 8.0E-51 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BRM88_03515 9d9a6a3e3fec8c8552b64f46ead30cea 355 Gene3D G3DSA:3.40.50.150 28 145 2.9E-6 T 31-10-2018 BRM88_03515 9d9a6a3e3fec8c8552b64f46ead30cea 355 Gene3D G3DSA:3.40.50.150 160 352 2.4E-41 T 31-10-2018 BRM88_03515 9d9a6a3e3fec8c8552b64f46ead30cea 355 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 277 283 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_03515 9d9a6a3e3fec8c8552b64f46ead30cea 355 SUPERFAMILY SSF53335 168 345 1.72E-21 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_07285 b3d79917cb4e5c9f1e47495a587634b4 376 Gene3D G3DSA:3.30.450.90 2 102 1.0E-31 T 31-10-2018 BRM88_07285 b3d79917cb4e5c9f1e47495a587634b4 376 Gene3D G3DSA:3.40.50.300 104 357 7.7E-86 T 31-10-2018 BRM88_07285 b3d79917cb4e5c9f1e47495a587634b4 376 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 7 347 1.1E-134 T 31-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 BRM88_07285 b3d79917cb4e5c9f1e47495a587634b4 376 SUPERFAMILY SSF52540 8 341 2.54E-68 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07285 b3d79917cb4e5c9f1e47495a587634b4 376 Pfam PF00437 Type II/IV secretion system protein 12 270 3.8E-34 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 160 189 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 29 45 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 259 285 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 123 145 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 88 112 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 231 258 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PRINTS PR00073 Coprogen oxidase signature 46 67 4.0E-83 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 SUPERFAMILY SSF102886 5 297 1.83E-130 T 31-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 164 188 - T 31-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 1 274 56.738 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 Gene3D G3DSA:3.40.1500.10 1 298 8.7E-130 T 31-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 Pfam PF01218 Coproporphyrinogen III oxidase 6 298 9.6E-130 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_22595 8efc1d4fc971b9719ac06b7140d8f458 299 PIRSF PIRSF000166 2 299 3.9E-122 T 31-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 277 2.4E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 SMART SM00387 321 433 1.3E-31 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 SMART SM00388 214 278 2.4E-20 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 Gene3D G3DSA:1.10.287.130 209 279 3.3E-23 T 31-10-2018 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 Pfam PF11808 Domain of unknown function (DUF3329) 13 98 1.7E-21 T 31-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 SUPERFAMILY SSF55874 267 429 8.38E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 Gene3D G3DSA:3.30.565.10 281 437 4.7E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 430 2.3E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 SUPERFAMILY SSF47384 201 278 9.61E-19 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 SUPERFAMILY SSF55785 94 166 3.59E-6 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_19580 4bf830116ad6ca58a5dbd78c304ffb66 447 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 102 429 2.1E-125 T 31-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 PIRSF PIRSF001413 4 404 7.3E-155 T 31-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 63 388 1.0E-44 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 91 105 - T 31-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 Gene3D G3DSA:3.40.50.1100 20 216 4.7E-178 T 31-10-2018 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 Gene3D G3DSA:3.40.50.1100 64 394 4.7E-178 T 31-10-2018 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 17 399 1.0E-185 T 31-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 SUPERFAMILY SSF53686 13 398 2.23E-142 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_17370 dfc6f613d92d31bf9fb989a80076618c 405 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 12 401 50.657 T 31-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 SUPERFAMILY SSF56935 20 860 3.97E-74 T 31-10-2018 BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 156 1.5E-13 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 Pfam PF00593 TonB dependent receptor 363 861 1.1E-37 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 Gene3D G3DSA:2.40.170.20 237 862 1.0E-43 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 Gene3D G3DSA:2.170.130.10 43 160 4.3E-13 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_00805 52367830f8aa326a88c7b24d0dfb667c 862 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 31 861 2.1E-186 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 ProSitePatterns PS00818 Dps protein family signature 1. 60 76 - T 31-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 Gene3D G3DSA:1.20.1260.10 18 181 1.5E-56 T 31-10-2018 IPR012347 Ferritin-like BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 SUPERFAMILY SSF47240 27 181 6.32E-45 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 60 76 4.1E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 84 100 4.1E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 158 176 4.1E-12 T 31-10-2018 IPR002177 DNA-binding protein Dps BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 Pfam PF00210 Ferritin-like domain 41 181 3.1E-29 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 ProSitePatterns PS00819 Dps protein family signature 2. 86 100 - T 31-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BRM88_09005 ccd47be4438b3aaddeb35b3b2a2ef944 181 PIRSF PIRSF005900 19 181 2.4E-46 T 31-10-2018 IPR002177 DNA-binding protein Dps BRM88_10910 31168d2952c5df50cfabced53ac530cb 60 Pfam PF00313 'Cold-shock' DNA-binding domain 5 58 7.3E-7 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_10910 31168d2952c5df50cfabced53ac530cb 60 SUPERFAMILY SSF50249 1 58 4.16E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10910 31168d2952c5df50cfabced53ac530cb 60 PIRSF PIRSF002599 1 60 2.5E-9 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 BRM88_10910 31168d2952c5df50cfabced53ac530cb 60 Gene3D G3DSA:2.40.50.140 1 60 1.5E-12 T 31-10-2018 BRM88_18645 f60273780700023b006c6c939d40c552 262 Pfam PF09850 Type VI secretion system protein DotU 32 231 1.6E-55 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU BRM88_18645 f60273780700023b006c6c939d40c552 262 Gene3D G3DSA:1.25.40.590 28 191 6.0E-41 T 31-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily BRM88_18645 f60273780700023b006c6c939d40c552 262 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 32 238 1.5E-62 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU BRM88_24380 e694763307c31502623f6c3c0a96c877 411 Gene3D G3DSA:2.70.70.10 278 410 1.8E-35 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_24380 e694763307c31502623f6c3c0a96c877 411 SUPERFAMILY SSF51261 188 408 2.09E-45 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_24380 e694763307c31502623f6c3c0a96c877 411 Pfam PF01551 Peptidase family M23 311 404 1.2E-27 T 31-10-2018 IPR016047 Peptidase M23 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 SMART SM00418 8 88 4.5E-19 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 42 57 1.2E-11 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 1.2E-11 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.2E-11 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 Pfam PF08241 Methyltransferase domain 152 245 2.7E-24 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 6.7E-15 T 31-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 Gene3D G3DSA:3.40.50.150 135 304 5.1E-36 T 31-10-2018 BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 SUPERFAMILY SSF53335 124 295 1.09E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 Gene3D G3DSA:1.10.10.10 1 85 1.2E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10805 2bce9f938ba27fd099add9674119ccce 331 SUPERFAMILY SSF46785 1 82 4.4E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 SMART SM00729 8 225 1.2E-50 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 SUPERFAMILY SSF102114 4 384 1.24E-106 T 31-10-2018 BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 Gene3D G3DSA:3.80.30.20 2 303 3.1E-98 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 9 359 3.8E-110 T 31-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 Pfam PF04055 Radical SAM superfamily 13 175 6.0E-20 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_05815 c8d0bdc134a9e0b45530146adfd94729 385 Pfam PF06969 HemN C-terminal domain 311 373 5.3E-9 T 31-10-2018 IPR010723 HemN, C-terminal BRM88_04350 c617bde9565a2a2ae52f378a881b2a8a 279 Gene3D G3DSA:3.90.550.10 2 228 1.3E-35 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_04350 c617bde9565a2a2ae52f378a881b2a8a 279 Pfam PF00535 Glycosyl transferase family 2 8 130 1.7E-19 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_04350 c617bde9565a2a2ae52f378a881b2a8a 279 SUPERFAMILY SSF53448 5 250 6.44E-44 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Gene3D G3DSA:1.10.287.130 337 434 3.7E-18 T 31-10-2018 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Pfam PF13188 PAS domain 225 266 2.6E-7 T 31-10-2018 IPR000014 PAS domain BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Gene3D G3DSA:3.30.565.10 438 598 5.7E-31 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 228 346 1.5E-7 T 31-10-2018 IPR000014 PAS domain BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 592 7.1E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Pfam PF00512 His Kinase A (phospho-acceptor) domain 370 436 3.3E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 SMART SM00388 368 436 3.1E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 SUPERFAMILY SSF47384 353 436 9.42E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 SUPERFAMILY SSF55785 209 339 6.81E-14 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 SMART SM00387 481 594 1.0E-27 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 SUPERFAMILY SSF55874 425 592 5.11E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 572 4.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 535 4.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 578 591 4.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Pfam PF05227 CHASE3 domain 44 175 6.2E-15 T 31-10-2018 IPR007891 CHASE3 BRM88_21005 2167deb02ee768c2f868baa2947201f7 603 Gene3D G3DSA:3.30.450.20 206 336 1.8E-10 T 31-10-2018 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 31-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 PIRSF PIRSF000138 2 380 1.4E-122 T 31-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 Pfam PF01070 FMN-dependent dehydrogenase 13 376 1.7E-126 T 31-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 Gene3D G3DSA:3.20.20.70 3 383 2.8E-126 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 SUPERFAMILY SSF51395 6 375 4.88E-98 T 31-10-2018 BRM88_00115 f52f4a48908ac2fb169d7656f484cce6 388 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.816 T 31-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 PIRSF PIRSF004808 2 251 8.2E-70 T 31-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 Gene3D G3DSA:1.10.8.590 179 253 7.1E-17 T 31-10-2018 BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 SUPERFAMILY SSF75217 7 167 9.16E-36 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 Gene3D G3DSA:3.40.1280.10 3 168 6.1E-62 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 5 243 4.8E-65 T 31-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 BRM88_14265 e3be7b7c3bc5fc0749e5a8862d9766d2 254 Pfam PF00588 SpoU rRNA Methylase family 7 157 1.5E-35 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BRM88_23155 a8e4f52ce582f6c490f622b385b11e69 835 Gene3D G3DSA:3.40.50.1820 562 829 3.8E-45 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23155 a8e4f52ce582f6c490f622b385b11e69 835 Gene3D G3DSA:2.120.10.30 101 187 1.0E-7 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_23155 a8e4f52ce582f6c490f622b385b11e69 835 SUPERFAMILY SSF82171 102 528 9.22E-14 T 31-10-2018 BRM88_23155 a8e4f52ce582f6c490f622b385b11e69 835 Pfam PF00326 Prolyl oligopeptidase family 658 822 4.3E-23 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_23155 a8e4f52ce582f6c490f622b385b11e69 835 SUPERFAMILY SSF53474 566 821 7.1E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 PRINTS PR01011 Glutathione peroxidase family signature 81 97 1.9E-14 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 PRINTS PR01011 Glutathione peroxidase family signature 142 151 1.9E-14 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 PRINTS PR01011 Glutathione peroxidase family signature 46 63 1.9E-14 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 Pfam PF00255 Glutathione peroxidase 36 134 5.3E-32 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 Gene3D G3DSA:3.40.30.10 17 184 6.4E-50 T 31-10-2018 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 ProSitePatterns PS00460 Glutathione peroxidases active site. 48 63 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 PIRSF PIRSF000303 2 184 6.8E-55 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_10745 a52d883290502d5f72cf00251d9b5e29 185 SUPERFAMILY SSF52833 26 180 1.3E-47 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 100 788 1.5E-172 T 31-10-2018 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Gene3D G3DSA:1.10.3810.10 83 282 1.3E-68 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 SUPERFAMILY SSF56601 247 817 2.64E-118 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 SUPERFAMILY SSF53955 78 293 3.09E-69 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Pfam PF17092 Penicillin-binding protein OB-like domain 353 449 3.7E-9 T 31-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Pfam PF00912 Transglycosylase 91 266 9.3E-57 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Pfam PF00905 Penicillin binding protein transpeptidase domain 454 628 1.8E-23 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Gene3D G3DSA:3.40.710.10 680 836 2.6E-32 T 31-10-2018 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Gene3D G3DSA:3.40.710.10 431 676 9.9E-71 T 31-10-2018 BRM88_05895 6cfca01e9c293ac28bbd74f94c036d94 840 Gene3D G3DSA:3.40.710.10 289 365 9.1E-6 T 31-10-2018 BRM88_18395 47bf2db650b9bfca605ab153bb629076 524 SUPERFAMILY SSF56112 280 505 4.1E-18 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_18395 47bf2db650b9bfca605ab153bb629076 524 Gene3D G3DSA:1.10.510.10 260 520 6.9E-16 T 31-10-2018 BRM88_18395 47bf2db650b9bfca605ab153bb629076 524 SMART SM00220 210 500 1.0E-6 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BRM88_18395 47bf2db650b9bfca605ab153bb629076 524 Pfam PF00069 Protein kinase domain 282 500 6.6E-11 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BRM88_18395 47bf2db650b9bfca605ab153bb629076 524 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 216 247 - T 31-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 BRM88_01930 f9ae14fb14367a57dfe2e7ee30ca137a 596 Pfam PF05960 Bacterial protein of unknown function (DUF885) 55 584 4.4E-85 T 31-10-2018 IPR010281 Protein of unknown function DUF885 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 SUPERFAMILY SSF50486 204 304 3.53E-30 T 31-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 303 35.53 T 31-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 Gene3D G3DSA:3.10.25.10 206 306 3.7E-28 T 31-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 301 8.6E-90 T 31-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 Pfam PF02911 Formyl transferase, C-terminal domain 203 299 1.0E-26 T 31-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 SUPERFAMILY SSF53328 1 206 8.24E-61 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 Gene3D G3DSA:3.40.50.170 1 205 4.9E-73 T 31-10-2018 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 131 154 - T 31-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_02995 b4509b84cefd8eaeffc39b2f6296cf78 307 Pfam PF00551 Formyl transferase 1 176 3.8E-41 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 5.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 5.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 5.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 5.3E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 Gene3D G3DSA:3.30.565.10 280 423 3.1E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 SUPERFAMILY SSF55874 280 422 5.11E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 SMART SM00388 213 279 4.9E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 276 1.1E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 SUPERFAMILY SSF47384 196 275 1.77E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 SMART SM00387 322 423 1.6E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 422 3.3E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20080 4b270c3d7c50f1d594dcc84dd5248e28 423 Gene3D G3DSA:1.10.287.130 173 279 2.0E-16 T 31-10-2018 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 Gene3D G3DSA:3.40.470.10 270 469 3.5E-58 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 SUPERFAMILY SSF52141 278 455 1.67E-53 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 SMART SM00986 304 465 2.1E-35 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 10 236 8.4E-66 T 31-10-2018 IPR023875 DNA metabolism protein, putative BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 SMART SM00987 304 465 2.1E-35 T 31-10-2018 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 TIGRFAM TIGR03914 UDG_fam_dom: uracil-DNA glycosylase family domain 239 466 8.4E-97 T 31-10-2018 IPR005273 Uracil-DNA glycosylase family 4 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 Pfam PF13566 Domain of unknown function (DUF4130 77 235 1.1E-42 T 31-10-2018 IPR025404 Domain of unknown function DUF4130 BRM88_03340 7f9054affe5a723fe7f631aabce921b3 482 Pfam PF03167 Uracil DNA glycosylase superfamily 304 454 1.4E-36 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 SUPERFAMILY SSF69593 429 587 5.1E-27 T 31-10-2018 BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 Pfam PF07690 Major Facilitator Superfamily 47 386 1.8E-17 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 SUPERFAMILY SSF103473 11 438 1.57E-24 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 Pfam PF01553 Acyltransferase 462 582 8.1E-23 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 SMART SM00563 469 585 2.0E-25 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_02685 fdfd8175c7992223ed828f8c99ea3c81 640 Gene3D G3DSA:1.20.1250.20 9 450 2.5E-23 T 31-10-2018 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 Hamap MF_00455 Xylose isomerase [xylA]. 19 443 53.411 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 Gene3D G3DSA:3.20.20.150 10 445 2.4E-175 T 31-10-2018 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 188 209 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 141 161 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 100 122 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 341 352 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 164 183 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 237 261 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 279 306 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 308 319 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 215 234 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 SUPERFAMILY SSF51658 11 443 2.49E-161 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily BRM88_23480 9d96c98baef94bafe1b1ed0207e517f0 445 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 12 443 1.8E-210 T 31-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 Hamap MF_00455 Xylose isomerase [xylA]. 19 443 53.411 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 Gene3D G3DSA:3.20.20.150 10 445 2.4E-175 T 31-10-2018 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 188 209 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 141 161 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 100 122 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 341 352 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 164 183 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 237 261 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 279 306 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 308 319 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 PRINTS PR00688 Xylose isomerase signature 215 234 4.4E-79 T 31-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 SUPERFAMILY SSF51658 11 443 2.49E-161 T 31-10-2018 IPR036237 Xylose isomerase-like superfamily BRM88_15490 9d96c98baef94bafe1b1ed0207e517f0 445 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 12 443 1.8E-210 T 31-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 22.259 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 Gene3D G3DSA:1.20.5.1150 16 54 1.7E-20 T 31-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.8E-24 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 Pfam PF01165 Ribosomal protein S21 3 56 5.6E-22 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 1.0E-9 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 4.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 4.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 4.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 4.1E-16 T 31-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22015 35b943693d9b9050dbf636e6ca69f3cd 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 31-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_11040 8fbf3ef623e63a4c2bb07646ed130970 194 SUPERFAMILY SSF52218 1 184 4.86E-49 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_11040 8fbf3ef623e63a4c2bb07646ed130970 194 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 192 30.609 T 31-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BRM88_11040 8fbf3ef623e63a4c2bb07646ed130970 194 Gene3D G3DSA:3.40.50.360 1 186 1.4E-55 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_11040 8fbf3ef623e63a4c2bb07646ed130970 194 Pfam PF02525 Flavodoxin-like fold 1 183 3.5E-46 T 31-10-2018 IPR003680 Flavodoxin-like fold BRM88_20715 13287c9d872ac670381a5d3b751105d1 207 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 9 191 5.0E-68 T 31-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BRM88_20715 13287c9d872ac670381a5d3b751105d1 207 SUPERFAMILY SSF52540 16 195 1.06E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20715 13287c9d872ac670381a5d3b751105d1 207 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 13 197 26.208 T 31-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BRM88_20715 13287c9d872ac670381a5d3b751105d1 207 Pfam PF01926 50S ribosome-binding GTPase 27 135 1.9E-18 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_20715 13287c9d872ac670381a5d3b751105d1 207 Gene3D G3DSA:3.40.50.300 2 198 5.3E-51 T 31-10-2018 BRM88_15465 12006fe4e13e44a117aa311029432431 188 Gene3D G3DSA:2.40.50.140 130 187 2.4E-21 T 31-10-2018 BRM88_15465 12006fe4e13e44a117aa311029432431 188 SUPERFAMILY SSF50249 130 187 2.06E-15 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_15465 12006fe4e13e44a117aa311029432431 188 SMART SM00841 131 186 1.7E-24 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BRM88_15465 12006fe4e13e44a117aa311029432431 188 Gene3D G3DSA:2.30.30.30 1 62 1.1E-7 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 BRM88_15465 12006fe4e13e44a117aa311029432431 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 1 187 38.702 T 31-10-2018 IPR011897 Translation elongation factor P-like, YeiP BRM88_15465 12006fe4e13e44a117aa311029432431 188 PIRSF PIRSF005901 1 188 7.5E-60 T 31-10-2018 IPR020599 Translation elongation factor P/YeiP BRM88_15465 12006fe4e13e44a117aa311029432431 188 SMART SM01185 68 123 3.9E-14 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BRM88_15465 12006fe4e13e44a117aa311029432431 188 SUPERFAMILY SSF50249 69 128 1.16E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_15465 12006fe4e13e44a117aa311029432431 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 2 60 8.9E-12 T 31-10-2018 IPR013185 Translation elongation factor, KOW-like BRM88_15465 12006fe4e13e44a117aa311029432431 188 Gene3D G3DSA:2.40.50.140 66 128 4.3E-15 T 31-10-2018 BRM88_15465 12006fe4e13e44a117aa311029432431 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 31-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site BRM88_15465 12006fe4e13e44a117aa311029432431 188 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 2 187 7.4E-84 T 31-10-2018 IPR011897 Translation elongation factor P-like, YeiP BRM88_15465 12006fe4e13e44a117aa311029432431 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.6E-20 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BRM88_15465 12006fe4e13e44a117aa311029432431 188 SUPERFAMILY SSF50104 2 62 1.32E-8 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_15465 12006fe4e13e44a117aa311029432431 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 5.4E-13 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BRM88_14560 6bb4493d536d57a0e513b9271f7d737b 146 Gene3D G3DSA:2.30.30.220 6 126 7.9E-44 T 31-10-2018 IPR036760 SspB-like superfamily BRM88_14560 6bb4493d536d57a0e513b9271f7d737b 146 SUPERFAMILY SSF101738 6 117 6.15E-45 T 31-10-2018 IPR036760 SspB-like superfamily BRM88_14560 6bb4493d536d57a0e513b9271f7d737b 146 Pfam PF04386 Stringent starvation protein B 11 146 9.1E-34 T 31-10-2018 IPR007481 Stringent starvation protein B BRM88_14560 6bb4493d536d57a0e513b9271f7d737b 146 PIRSF PIRSF005276 5 146 4.3E-54 T 31-10-2018 IPR007481 Stringent starvation protein B BRM88_01695 a95b3645841af0646ad917ca6ec414f1 209 Pfam PF01553 Acyltransferase 59 168 4.7E-11 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_01695 a95b3645841af0646ad917ca6ec414f1 209 SUPERFAMILY SSF69593 20 186 8.63E-22 T 31-10-2018 BRM88_01695 a95b3645841af0646ad917ca6ec414f1 209 SMART SM00563 59 171 8.2E-24 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_22965 a651348aa8557612971fe137e8b09b17 436 Gene3D G3DSA:3.40.50.12780 10 334 6.0E-24 T 31-10-2018 BRM88_22965 a651348aa8557612971fe137e8b09b17 436 SUPERFAMILY SSF56801 16 435 6.41E-42 T 31-10-2018 BRM88_22965 a651348aa8557612971fe137e8b09b17 436 Pfam PF00501 AMP-binding enzyme 100 292 1.1E-18 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_22965 a651348aa8557612971fe137e8b09b17 436 Gene3D G3DSA:3.30.300.30 335 432 2.8E-8 T 31-10-2018 BRM88_01540 0a601e1dd628dc293646597c9f8862f0 318 Pfam PF13936 Helix-turn-helix domain 3 45 8.2E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_01540 0a601e1dd628dc293646597c9f8862f0 318 Gene3D G3DSA:3.30.420.10 156 316 4.7E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_01540 0a601e1dd628dc293646597c9f8862f0 318 SUPERFAMILY SSF53098 165 308 1.01E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_01540 0a601e1dd628dc293646597c9f8862f0 318 Pfam PF00665 Integrase core domain 171 266 3.3E-8 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SUPERFAMILY SSF55781 35 171 5.1E-21 T 31-10-2018 BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Pfam PF00990 Diguanylate cyclase, GGDEF domain 175 320 1.5E-10 T 31-10-2018 IPR000160 GGDEF domain BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SUPERFAMILY SSF141868 357 598 7.19E-84 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Gene3D G3DSA:3.30.450.40 29 174 1.5E-13 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Gene3D G3DSA:3.20.20.450 348 603 2.8E-92 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SMART SM00065 34 177 0.0071 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Pfam PF01590 GAF domain 37 144 1.4E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Gene3D G3DSA:3.30.70.270 176 347 2.3E-38 T 31-10-2018 BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SMART SM00267 163 330 1.5E-4 T 31-10-2018 IPR000160 GGDEF domain BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 Pfam PF00563 EAL domain 350 584 2.5E-73 T 31-10-2018 IPR001633 EAL domain BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SMART SM00052 343 589 7.8E-107 T 31-10-2018 IPR001633 EAL domain BRM88_12470 f5e41d72f72ab535f615954edcc5835e 618 SUPERFAMILY SSF55073 180 312 6.04E-9 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_11765 7d264836e18554b8b56053b403b86364 258 SUPERFAMILY SSF51366 1 255 1.1E-70 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_11765 7d264836e18554b8b56053b403b86364 258 Gene3D G3DSA:3.20.20.70 1 258 4.6E-91 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_11765 7d264836e18554b8b56053b403b86364 258 Pfam PF00977 Histidine biosynthesis protein 5 238 1.1E-71 T 31-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BRM88_11765 7d264836e18554b8b56053b403b86364 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 255 9.6E-101 T 31-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BRM88_11765 7d264836e18554b8b56053b403b86364 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 255 43.613 T 31-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BRM88_07130 907b330641e1ab300669fb9d2e329c6a 440 Gene3D G3DSA:3.90.1150.10 305 440 3.0E-43 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_07130 907b330641e1ab300669fb9d2e329c6a 440 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 437 1.2E-108 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_07130 907b330641e1ab300669fb9d2e329c6a 440 SUPERFAMILY SSF53383 13 437 9.25E-97 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_07130 907b330641e1ab300669fb9d2e329c6a 440 Gene3D G3DSA:3.40.640.10 12 301 1.1E-77 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_07130 907b330641e1ab300669fb9d2e329c6a 440 PIRSF PIRSF001434 4 440 1.6E-102 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 Gene3D G3DSA:3.30.300.20 2 105 1.4E-30 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 31-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 2.9E-30 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 7 110 26.169 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 SUPERFAMILY SSF89919 4 113 2.22E-30 T 31-10-2018 IPR023799 Ribosome-binding factor A domain superfamily BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 Pfam PF02033 Ribosome-binding factor A 8 110 4.1E-30 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BRM88_17195 373d805d52a4b755c9aec77ea084286a 130 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 10 97 3.0E-44 T 31-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 Pfam PF03466 LysR substrate binding domain 103 307 1.2E-30 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 Gene3D G3DSA:3.40.190.10 177 278 4.7E-37 T 31-10-2018 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 SUPERFAMILY SSF46785 10 121 3.75E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 Gene3D G3DSA:1.10.10.10 11 98 1.0E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 Gene3D G3DSA:3.40.190.10 104 289 4.7E-37 T 31-10-2018 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 1.5E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 6.1E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19920 53c1a1600ce1b770d18f9f3b209335e2 333 SUPERFAMILY SSF53850 103 308 3.26E-30 T 31-10-2018 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Gene3D G3DSA:3.40.50.300 1 243 6.3E-73 T 31-10-2018 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Gene3D G3DSA:4.10.860.10 619 673 1.2E-16 T 31-10-2018 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 668 0.0 T 31-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Pfam PF02151 UvrB/uvrC motif 637 669 3.1E-10 T 31-10-2018 IPR001943 UVR domain GO:0005515 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 SUPERFAMILY SSF52540 37 582 1.66E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Gene3D G3DSA:3.40.50.300 415 596 4.5E-49 T 31-10-2018 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Gene3D G3DSA:3.40.50.300 261 414 2.3E-50 T 31-10-2018 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 670 43.0 T 31-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 SMART SM00490 460 546 2.5E-20 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 SUPERFAMILY SSF46600 623 669 9.94E-12 T 31-10-2018 IPR036876 UVR domain superfamily BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 SUPERFAMILY SSF52540 3 415 1.27E-132 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 SMART SM00487 9 426 1.0E-26 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Pfam PF12344 Ultra-violet resistance protein B 552 593 2.2E-21 T 31-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Pfam PF04851 Type III restriction enzyme, res subunit 16 105 2.4E-9 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BRM88_17075 108edba80b38cf6d29de2bedb5859d48 673 Pfam PF00271 Helicase conserved C-terminal domain 441 544 1.1E-17 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 Gene3D G3DSA:1.10.3080.10 41 464 1.3E-82 T 31-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 SUPERFAMILY SSF81340 27 444 8.89E-91 T 31-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 381 397 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 99 116 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 185 204 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 399 418 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 352 372 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 PRINTS PR00762 Chloride channel signature 133 152 2.4E-29 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_07940 dcbcd0e797d9122350aaaaacf7d80585 481 Pfam PF00654 Voltage gated chloride channel 88 431 4.1E-81 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Pfam PF16921 Tex protein YqgF-like domain 329 455 6.0E-54 T 31-10-2018 IPR032639 Tex protein, YqgF-like domain BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SUPERFAMILY SSF50249 641 728 1.94E-24 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Gene3D G3DSA:1.10.10.650 4 114 2.7E-38 T 31-10-2018 IPR023319 Tex-like protein, HTH domain superfamily BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Pfam PF12836 Helix-hairpin-helix motif 495 559 4.5E-28 T 31-10-2018 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Gene3D G3DSA:2.40.50.140 635 730 1.9E-28 T 31-10-2018 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Gene3D G3DSA:1.10.150.310 503 634 5.0E-49 T 31-10-2018 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SUPERFAMILY SSF53098 325 473 5.54E-51 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SUPERFAMILY SSF158832 6 324 4.18E-113 T 31-10-2018 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Gene3D G3DSA:1.10.3500.10 117 500 2.6E-148 T 31-10-2018 IPR023323 Tex-like domain superfamily BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SUPERFAMILY SSF47781 564 636 8.23E-19 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Pfam PF00575 S1 RNA binding domain 653 724 5.9E-21 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SUPERFAMILY SSF47781 474 561 6.23E-27 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Pfam PF09371 Tex-like protein N-terminal domain 14 197 5.6E-66 T 31-10-2018 IPR018974 Tex-like protein, N-terminal BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 Gene3D G3DSA:3.30.420.140 328 455 2.6E-148 T 31-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SMART SM00316 653 724 2.2E-25 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11580 6c77826f430e7b5f98bee603f2219136 786 SMART SM00732 329 428 4.6E-35 T 31-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BRM88_00785 5502de3b2e01504f73027eae568d7309 802 Pfam PF09369 Domain of unknown function (DUF1998) 647 753 3.5E-11 T 31-10-2018 IPR018973 DEAD/DEAH-box helicase, putative BRM88_00785 5502de3b2e01504f73027eae568d7309 802 Gene3D G3DSA:3.40.50.300 264 412 1.7E-24 T 31-10-2018 BRM88_00785 5502de3b2e01504f73027eae568d7309 802 Pfam PF00271 Helicase conserved C-terminal domain 279 383 1.8E-14 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_00785 5502de3b2e01504f73027eae568d7309 802 Gene3D G3DSA:3.40.50.300 30 240 6.0E-44 T 31-10-2018 BRM88_00785 5502de3b2e01504f73027eae568d7309 802 SUPERFAMILY SSF52540 62 390 1.19E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00785 5502de3b2e01504f73027eae568d7309 802 SMART SM00490 296 384 4.2E-16 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_00785 5502de3b2e01504f73027eae568d7309 802 SMART SM00487 46 250 2.4E-29 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_00785 5502de3b2e01504f73027eae568d7309 802 Pfam PF00270 DEAD/DEAH box helicase 52 220 9.0E-27 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_04305 7d52f687735573edbf758440e1a50899 770 Pfam PF00263 Bacterial type II and III secretion system protein 566 741 7.2E-44 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 BRM88_04305 7d52f687735573edbf758440e1a50899 770 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 686 719 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BRM88_04305 7d52f687735573edbf758440e1a50899 770 Pfam PF03958 Bacterial type II/III secretion system short domain 257 324 2.2E-7 T 31-10-2018 IPR005644 NolW-like BRM88_04305 7d52f687735573edbf758440e1a50899 770 Pfam PF03958 Bacterial type II/III secretion system short domain 192 250 7.5E-7 T 31-10-2018 IPR005644 NolW-like BRM88_04305 7d52f687735573edbf758440e1a50899 770 Pfam PF03958 Bacterial type II/III secretion system short domain 331 482 4.6E-9 T 31-10-2018 IPR005644 NolW-like BRM88_04305 7d52f687735573edbf758440e1a50899 770 Gene3D G3DSA:3.30.1370.120 93 248 4.0E-30 T 31-10-2018 IPR038591 NolW-like superfamily BRM88_04305 7d52f687735573edbf758440e1a50899 770 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 96 750 4.3E-183 T 31-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 BRM88_04305 7d52f687735573edbf758440e1a50899 770 PRINTS PR00811 Bacterial general secretion pathway protein D signature 482 492 3.6E-15 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_04305 7d52f687735573edbf758440e1a50899 770 PRINTS PR00811 Bacterial general secretion pathway protein D signature 705 723 3.6E-15 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_04305 7d52f687735573edbf758440e1a50899 770 PRINTS PR00811 Bacterial general secretion pathway protein D signature 562 586 3.6E-15 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_04305 7d52f687735573edbf758440e1a50899 770 PRINTS PR00811 Bacterial general secretion pathway protein D signature 728 742 3.6E-15 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Gene3D G3DSA:2.60.40.10 630 708 5.6E-27 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Gene3D G3DSA:2.60.120.260 53 226 2.6E-40 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 SUPERFAMILY SSF49785 51 226 1.04E-38 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 SUPERFAMILY SSF49303 248 340 4.89E-14 T 31-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Gene3D G3DSA:2.60.40.10 711 821 3.0E-27 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Gene3D G3DSA:3.20.20.80 342 628 8.2E-87 T 31-10-2018 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Pfam PF00703 Glycosyl hydrolases family 2 248 340 3.5E-11 T 31-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 429 512 4.0E-10 T 31-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 347 422 2.5E-9 T 31-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 95 224 5.0E-14 T 31-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Gene3D G3DSA:2.60.40.10 227 340 7.5E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 SUPERFAMILY SSF51445 345 623 3.89E-64 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 440 454 - T 31-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BRM88_20935 17ab93bb7c74a21e6bf9331daed2f462 965 Pfam PF16355 Domain of unknown function (DUF4982) 643 701 1.9E-17 T 31-10-2018 IPR032311 Domain of unknown function DUF4982 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_14990 bd2a272e7dc4ff7232df087f4068a892 138 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 67 121 3.3E-15 T 31-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BRM88_20570 2f1cfd026903c1e6b7b6d0af5dbcd4ce 161 Pfam PF13673 Acetyltransferase (GNAT) domain 54 140 2.3E-12 T 31-10-2018 IPR000182 GNAT domain BRM88_20570 2f1cfd026903c1e6b7b6d0af5dbcd4ce 161 SUPERFAMILY SSF55729 8 141 2.79E-23 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_20570 2f1cfd026903c1e6b7b6d0af5dbcd4ce 161 Gene3D G3DSA:3.40.630.30 4 156 5.9E-22 T 31-10-2018 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 Gene3D G3DSA:1.20.58.340 257 333 5.2E-19 T 31-10-2018 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 SUPERFAMILY SSF144083 269 330 2.88E-16 T 31-10-2018 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 Pfam PF01544 CorA-like Mg2+ transporter protein 42 329 2.1E-60 T 31-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 Gene3D G3DSA:3.30.460.20 2 141 1.0E-29 T 31-10-2018 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 Gene3D G3DSA:1.20.58.340 142 254 1.0E-31 T 31-10-2018 BRM88_14645 82df95b2f20b207b51ccc9fc76edd4a3 333 SUPERFAMILY SSF143865 7 265 9.81E-73 T 31-10-2018 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 SUPERFAMILY SSF54211 9 169 7.59E-32 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 402 494 6.9E-29 T 31-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 Gene3D G3DSA:3.30.230.10 18 168 3.2E-7 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 SMART SM00382 210 392 6.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 494 1.4E-195 T 31-10-2018 IPR004482 Mg chelatase-related protein BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 SUPERFAMILY SSF52540 190 498 7.31E-45 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 5.9E-45 T 31-10-2018 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 Gene3D G3DSA:3.40.50.300 182 497 7.2E-56 T 31-10-2018 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 394 3.3E-97 T 31-10-2018 IPR000523 Magnesium chelatase ChlI domain BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 1.4E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 1.4E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 1.4E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BRM88_00995 e878778e11bcb9aea98ef46f575ab09a 506 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 1.4E-6 T 31-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BRM88_18780 df3aadb013d44c47769d0be3a3fd39a1 292 SUPERFAMILY SSF55166 153 275 9.68E-25 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_18780 df3aadb013d44c47769d0be3a3fd39a1 292 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 210 273 1.4E-14 T 31-10-2018 IPR039561 Peptidase M15C GO:0008233 BRM88_18780 df3aadb013d44c47769d0be3a3fd39a1 292 Gene3D G3DSA:3.30.1380.10 151 273 5.4E-25 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 SUPERFAMILY SSF50156 221 306 4.6E-13 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 12 445 2.2E-99 T 31-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 Pfam PF02163 Peptidase family M50 11 432 1.2E-77 T 31-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 SUPERFAMILY SSF50156 89 179 4.73E-10 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 Gene3D G3DSA:2.30.42.10 133 215 2.3E-8 T 31-10-2018 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 Gene3D G3DSA:2.30.42.10 216 303 7.8E-14 T 31-10-2018 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 SMART SM00228 107 185 2.0 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_10275 961a62ae392aeda976d8cbb6c3509113 448 SMART SM00228 211 279 3.0E-4 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_14370 6819e6262b396103c08af210ab0198df 191 Pfam PF07879 PHB/PHA accumulation regulator DNA-binding domain 6 65 6.4E-28 T 31-10-2018 IPR012909 PHA accumulation regulator DNA-binding, N-terminal BRM88_14370 6819e6262b396103c08af210ab0198df 191 Pfam PF05233 PHB accumulation regulatory domain 70 109 1.8E-18 T 31-10-2018 IPR007897 PHB accumulation regulatory BRM88_14370 6819e6262b396103c08af210ab0198df 191 TIGRFAM TIGR01848 PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR 5 111 4.1E-53 T 31-10-2018 IPR010134 Polyhydroxyalkanoate synthesis repressor PhaR GO:0006355 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SUPERFAMILY SSF50249 328 409 3.08E-26 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:3.30.470.90 72 327 7.1E-93 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SUPERFAMILY SSF47781 671 739 9.53E-8 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 417 444 9.2E-12 T 31-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 332 407 2.5E-33 T 31-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 328 1.1E-120 T 31-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:2.20.70.80 401 441 1.1E-17 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:3.40.50.10190 740 835 8.7E-26 T 31-10-2018 IPR036420 BRCT domain superfamily BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 760 832 1.1E-12 T 31-10-2018 IPR001357 BRCT domain BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SMART SM00532 4 458 2.5E-249 T 31-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:1.10.150.20 442 509 2.7E-19 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:1.10.287.610 2 71 6.3E-26 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SUPERFAMILY SSF52113 758 834 5.05E-18 T 31-10-2018 IPR036420 BRCT domain superfamily BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SUPERFAMILY SSF47781 414 657 9.64E-50 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:1.10.150.20 581 660 1.1E-20 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Gene3D G3DSA:2.40.50.140 328 400 2.0E-31 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 502 1.0E-190 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SMART SM00292 760 837 1.1E-11 T 31-10-2018 IPR001357 BRCT domain BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Hamap MF_01588 DNA ligase [ligA]. 3 834 51.442 T 31-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 Pfam PF12826 Helix-hairpin-helix motif 585 648 2.7E-14 T 31-10-2018 BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 116 145 - T 31-10-2018 IPR018239 NAD-dependent DNA ligase, active site BRM88_12770 4913cc263a48afc65a9e4b253a3825b3 841 SUPERFAMILY SSF56091 5 326 1.13E-111 T 31-10-2018 BRM88_06450 71efb787038be879cf7304ef4d22764f 348 SMART SM00558 124 286 7.6E-5 T 31-10-2018 IPR003347 JmjC domain BRM88_06450 71efb787038be879cf7304ef4d22764f 348 SUPERFAMILY SSF51197 36 337 2.33E-56 T 31-10-2018 BRM88_06450 71efb787038be879cf7304ef4d22764f 348 Gene3D G3DSA:2.60.120.1660 16 274 5.6E-47 T 31-10-2018 BRM88_06450 71efb787038be879cf7304ef4d22764f 348 Pfam PF13621 Cupin-like domain 32 273 3.5E-57 T 31-10-2018 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 Gene3D G3DSA:3.30.70.980 127 203 1.1E-53 T 31-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 6 235 3.0E-87 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 Gene3D G3DSA:3.30.70.980 82 234 1.1E-53 T 31-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 Pfam PF01709 Transcriptional regulator 7 235 9.8E-89 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 SUPERFAMILY SSF75625 7 236 2.09E-86 T 31-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 Gene3D G3DSA:1.10.10.200 15 78 7.1E-27 T 31-10-2018 IPR017856 Integrase-like, N-terminal BRM88_08580 333b51e7eafe6c477a96690fc2609f29 242 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 2 237 33.31 T 31-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Gene3D G3DSA:2.60.40.10 388 558 6.2E-46 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Gene3D G3DSA:1.20.58.280 475 552 6.2E-46 T 31-10-2018 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 385 1034 46.622 T 31-10-2018 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 SUPERFAMILY SSF51445 546 934 3.62E-85 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 SMART SM00642 581 906 1.3E-4 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Gene3D G3DSA:3.20.20.80 40 292 8.9E-30 T 31-10-2018 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Gene3D G3DSA:3.20.20.80 572 936 1.6E-152 T 31-10-2018 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Pfam PF00128 Alpha amylase, catalytic domain 595 709 5.5E-5 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 SUPERFAMILY SSF51445 57 241 1.1E-22 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Pfam PF11896 Domain of unknown function (DUF3416) 388 571 6.2E-49 T 31-10-2018 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16|MetaCyc: PWY-7900 BRM88_00940 1b0bec5a08f54e9b439a608a13d8db3c 1038 Gene3D G3DSA:2.60.40.1180 939 1038 9.5E-21 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Gene3D G3DSA:2.40.50.100 59 92 3.9E-11 T 31-10-2018 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 44 345 2.6E-10 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 289 1.5E-14 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 SUPERFAMILY SSF111369 59 113 9.02E-9 T 31-10-2018 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Gene3D G3DSA:1.10.287.470 93 114 3.9E-11 T 31-10-2018 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Gene3D G3DSA:1.10.287.470 122 181 5.0E-7 T 31-10-2018 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 SUPERFAMILY SSF111369 165 267 6.67E-11 T 31-10-2018 BRM88_10440 28e1f7a4ed859d4593df225f33ffce1e 397 Gene3D G3DSA:2.40.30.170 231 351 5.7E-33 T 31-10-2018 BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 SUPERFAMILY SSF51735 1 260 3.25E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 Pfam PF00106 short chain dehydrogenase 6 193 7.9E-33 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 7.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 7.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_06040 4ed28eff45f03916786b16ee8a3ab377 279 Gene3D G3DSA:3.40.50.720 1 261 9.6E-44 T 31-10-2018 BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 Gene3D G3DSA:2.40.170.20 406 904 1.1E-43 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 165 2.9E-13 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 SUPERFAMILY SSF56935 26 904 7.94E-74 T 31-10-2018 BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 34 903 1.8E-191 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 Gene3D G3DSA:2.170.130.10 25 170 5.5E-13 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_06010 de2e2c993f54f97f901b10604cb22c3e 904 Pfam PF00593 TonB dependent receptor 436 903 1.2E-32 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 SUPERFAMILY SSF56042 176 347 3.74E-57 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 341 7.7E-136 T 31-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 Gene3D G3DSA:3.90.650.10 177 352 6.0E-63 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 Gene3D G3DSA:3.30.1330.10 11 175 1.3E-67 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 351 45.914 T 31-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 Pfam PF02769 AIR synthase related protein, C-terminal domain 181 346 4.3E-37 T 31-10-2018 IPR010918 PurM-like, C-terminal domain BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 Pfam PF00586 AIR synthase related protein, N-terminal domain 66 168 1.2E-13 T 31-10-2018 IPR016188 PurM-like, N-terminal domain BRM88_06655 0c915aee01a5d4d9a6d95b34424dd9a7 352 SUPERFAMILY SSF55326 12 174 8.82E-53 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 Pfam PF06144 DNA polymerase III, delta subunit 20 189 5.7E-21 T 31-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 Gene3D G3DSA:3.40.50.300 1 137 7.2E-40 T 31-10-2018 BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 332 5.4E-96 T 31-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 Gene3D G3DSA:1.10.8.60 143 211 1.5E-24 T 31-10-2018 BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 Gene3D G3DSA:1.20.272.10 213 340 2.4E-20 T 31-10-2018 BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 SUPERFAMILY SSF52540 2 209 4.5E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_17725 b0f51dbcc6842fba1717f1440af75b32 342 SUPERFAMILY SSF48019 211 333 1.6E-20 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 SUPERFAMILY SSF55973 3 109 5.89E-46 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 3 101 1.1E-41 T 31-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Gene3D G3DSA:3.30.300.10 11 272 5.6E-171 T 31-10-2018 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Gene3D G3DSA:3.30.300.10 102 391 5.6E-171 T 31-10-2018 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 31-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Gene3D G3DSA:3.30.300.10 5 235 5.6E-171 T 31-10-2018 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 261 269 - T 31-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 235 371 3.6E-68 T 31-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 370 1.3E-181 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 PIRSF PIRSF000497 1 401 6.3E-170 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 SUPERFAMILY SSF55973 110 234 3.92E-47 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 233 5.8E-43 T 31-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 SUPERFAMILY SSF55973 235 401 2.28E-67 T 31-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_20205 218140897aa468d7afda6a20b89e9dea 403 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 400 56.211 T 31-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BRM88_18960 960c8320b52d66108237b4affecb7a39 361 Pfam PF11876 Protein of unknown function (DUF3396) 126 331 3.7E-44 T 31-10-2018 IPR021815 Protein of unknown function DUF3396 BRM88_02315 653a7b4f6545c4768f0b723c6b00b149 109 PIRSF PIRSF029416 1 106 1.2E-51 T 31-10-2018 IPR016919 Uncharacterised conserved protein UCP029416, tyrosine-protein phosphatase, Mlr4629 BRM88_02315 653a7b4f6545c4768f0b723c6b00b149 109 Gene3D G3DSA:3.40.50.2300 1 83 6.3E-7 T 31-10-2018 BRM88_02315 653a7b4f6545c4768f0b723c6b00b149 109 SUPERFAMILY SSF52788 1 104 5.76E-19 T 31-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BRM88_02315 653a7b4f6545c4768f0b723c6b00b149 109 SMART SM00226 1 105 0.0047 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Gene3D G3DSA:3.40.50.10750 571 724 7.9E-86 T 31-10-2018 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Pfam PF01515 Phosphate acetyl/butaryl transferase 428 748 1.4E-90 T 31-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Gene3D G3DSA:3.40.50.10380 1 161 1.6E-67 T 31-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Pfam PF03949 Malic enzyme, NAD binding domain 166 360 1.8E-20 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 SMART SM00919 164 399 6.9E-129 T 31-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Gene3D G3DSA:3.40.50.10950 445 748 7.9E-86 T 31-10-2018 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 PIRSF PIRSF036684 1 756 0.0 T 31-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 SUPERFAMILY SSF51735 164 451 5.26E-84 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 SUPERFAMILY SSF53659 428 751 6.58E-86 T 31-10-2018 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Gene3D G3DSA:3.40.50.720 162 444 6.1E-81 T 31-10-2018 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 SMART SM01274 19 152 1.4E-73 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 Pfam PF00390 Malic enzyme, N-terminal domain 20 152 1.2E-25 T 31-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BRM88_05690 652f792a94c39e4ea89d69bf44911e67 769 SUPERFAMILY SSF53223 11 162 1.29E-50 T 31-10-2018 BRM88_10060 8dded9040564ccee274633fb319f668e 142 Pfam PF04060 Putative Fe-S cluster 19 51 5.4E-15 T 31-10-2018 IPR007202 4Fe-4S domain GO:0051536 BRM88_10060 8dded9040564ccee274633fb319f668e 142 Gene3D G3DSA:3.20.20.20 13 81 1.1E-14 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10060 8dded9040564ccee274633fb319f668e 142 Gene3D G3DSA:3.30.70.20 84 141 1.8E-12 T 31-10-2018 BRM88_10060 8dded9040564ccee274633fb319f668e 142 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 121 132 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_10060 8dded9040564ccee274633fb319f668e 142 PIRSF PIRSF005784 1 142 2.2E-63 T 31-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 BRM88_10060 8dded9040564ccee274633fb319f668e 142 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 141 1.7E-64 T 31-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 BRM88_10060 8dded9040564ccee274633fb319f668e 142 Pfam PF14697 4Fe-4S dicluster domain 84 137 6.8E-15 T 31-10-2018 BRM88_10060 8dded9040564ccee274633fb319f668e 142 SUPERFAMILY SSF54862 12 140 1.99E-26 T 31-10-2018 BRM88_20335 c23593f7058e1b8a27531c84089bd076 275 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 4 273 3.5E-102 T 31-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 BRM88_20335 c23593f7058e1b8a27531c84089bd076 275 Pfam PF02219 Methylenetetrahydrofolate reductase 3 274 1.6E-86 T 31-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BRM88_20335 c23593f7058e1b8a27531c84089bd076 275 SUPERFAMILY SSF51730 3 274 3.53E-91 T 31-10-2018 IPR029041 FAD-linked oxidoreductase-like BRM88_20335 c23593f7058e1b8a27531c84089bd076 275 Gene3D G3DSA:3.20.20.220 1 275 6.0E-98 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Gene3D G3DSA:3.30.420.40 181 367 9.9E-167 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Gene3D G3DSA:3.30.420.40 5 380 9.9E-167 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 SUPERFAMILY SSF53067 188 383 7.41E-68 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Gene3D G3DSA:2.60.34.10 384 524 5.3E-63 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 636 36.307 T 31-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Gene3D G3DSA:3.90.640.10 230 317 9.9E-167 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 SUPERFAMILY SSF53067 4 185 3.11E-66 T 31-10-2018 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Pfam PF00012 Hsp70 protein 4 601 5.2E-261 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 601 1.1E-284 T 31-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 Gene3D G3DSA:1.20.1270.10 525 604 2.0E-22 T 31-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 199 209 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 139 159 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 366 386 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 470 486 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 389 408 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 PRINTS PR00301 70kDa heat shock protein signature 335 351 2.4E-81 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 193 206 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 338 352 - T 31-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BRM88_10560 7a54c06b7171bcb4427aa8573d97f506 641 SUPERFAMILY SSF100920 385 541 3.01E-59 T 31-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 Gene3D G3DSA:1.25.40.10 53 191 1.3E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 SUPERFAMILY SSF46689 376 423 7.62E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 Pfam PF12833 Helix-turn-helix domain 395 476 8.5E-17 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 SUPERFAMILY SSF48452 27 166 2.52E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 426 470 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 SMART SM00342 389 474 1.4E-19 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_07065 837975a8da4fabd08936891241ca59c3 476 Gene3D G3DSA:1.10.10.60 372 476 4.0E-22 T 31-10-2018 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Pfam PF00890 FAD binding domain 12 408 4.1E-122 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Gene3D G3DSA:3.90.700.10 250 353 9.7E-168 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 9 596 3.4E-288 T 31-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 46 55 - T 31-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 SUPERFAMILY SSF46977 454 596 1.96E-48 T 31-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 12 596 3.2E-242 T 31-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Gene3D G3DSA:1.20.58.100 437 548 4.1E-37 T 31-10-2018 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 SUPERFAMILY SSF56425 240 358 4.34E-43 T 31-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 PIRSF PIRSF000171 1 586 8.0E-36 T 31-10-2018 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 SUPERFAMILY SSF51905 4 442 5.12E-77 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Gene3D G3DSA:4.10.80.40 549 596 1.2E-10 T 31-10-2018 BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Gene3D G3DSA:3.50.50.60 12 419 9.7E-168 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_12200 467d66c25ec1d7d5a2ad0fec6556efe9 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 596 9.2E-43 T 31-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_05880 9117c3087091150183e95e085f18b776 80 SUPERFAMILY SSF143800 1 79 2.35E-22 T 31-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_05880 9117c3087091150183e95e085f18b776 80 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 1.8E-20 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 PRINTS PR01249 Ribosomal protein L31 signature 60 78 7.6E-19 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.6E-19 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 PRINTS PR01249 Ribosomal protein L31 signature 45 60 7.6E-19 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 Gene3D G3DSA:2.30.170.50 1 80 4.5E-25 T 31-10-2018 BRM88_05880 9117c3087091150183e95e085f18b776 80 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 24.114 T 31-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_05880 9117c3087091150183e95e085f18b776 80 Pfam PF01197 Ribosomal protein L31 1 79 7.1E-29 T 31-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 SUPERFAMILY SSF52009 350 466 9.42E-32 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Gene3D G3DSA:3.50.30.10 372 477 6.0E-40 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Gene3D G3DSA:3.30.470.20 195 356 4.9E-54 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 482 793 2.6E-61 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 699 717 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 SUPERFAMILY SSF56059 3 384 2.35E-101 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 SUPERFAMILY SSF51621 462 795 8.38E-95 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Pfam PF00391 PEP-utilising enzyme, mobile domain 384 455 2.1E-24 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 414 425 - T 31-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 PIRSF PIRSF000854 1 797 0.0 T 31-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 794 0.0 T 31-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Gene3D G3DSA:3.30.1490.20 2 194 2.6E-69 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Gene3D G3DSA:3.20.20.60 478 795 1.5E-99 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 18 344 1.9E-111 T 31-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 752 764 3.0E-6 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 716 731 3.0E-6 T 31-10-2018 BRM88_11520 b56ad805e4c40f14b36d65d76b8d7db5 797 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 699 714 3.0E-6 T 31-10-2018 BRM88_16405 399688196c42cd2df2e23abf0ca317fa 118 Gene3D G3DSA:3.30.1360.20 20 117 6.6E-31 T 31-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 BRM88_16405 399688196c42cd2df2e23abf0ca317fa 118 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 19 112 23.898 T 31-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 BRM88_16405 399688196c42cd2df2e23abf0ca317fa 118 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 21 109 4.8E-27 T 31-10-2018 IPR001533 Pterin 4 alpha carbinolamine dehydratase GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 BRM88_16405 399688196c42cd2df2e23abf0ca317fa 118 SUPERFAMILY SSF55248 21 113 2.35E-31 T 31-10-2018 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily GO:0006729|GO:0008124 KEGG: 00790+4.2.1.96|MetaCyc: PWY-7158 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-19 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 SMART SM00411 1 90 7.2E-45 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.2E-34 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 Gene3D G3DSA:4.10.520.10 1 90 4.4E-37 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_05195 44b3778ddf4e3c03e66c3cf5529d3e49 90 SUPERFAMILY SSF47729 1 90 5.0E-33 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 Gene3D G3DSA:1.10.8.300 211 314 5.3E-25 T 31-10-2018 BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 SUPERFAMILY SSF52540 20 292 8.35E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 SMART SM00382 46 187 0.0021 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 Gene3D G3DSA:3.40.50.300 30 195 6.7E-42 T 31-10-2018 BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 PIRSF PIRSF002849 1 317 1.5E-120 T 31-10-2018 BRM88_05430 0c0e3b985a6563fedeba69f5b4172e6f 317 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 49 179 4.3E-63 T 31-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 BRM88_22080 2f218da0343bfeaedd7a397e76762385 387 Pfam PF02628 Cytochrome oxidase assembly protein 136 377 3.9E-45 T 31-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 BRM88_22080 2f218da0343bfeaedd7a397e76762385 387 Pfam PF02628 Cytochrome oxidase assembly protein 15 134 1.2E-19 T 31-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 SMART SM00847 476 566 1.4E-33 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Pfam PF04408 Helicase associated domain (HA2) 479 550 2.1E-17 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Pfam PF00271 Helicase conserved C-terminal domain 295 415 3.5E-10 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 703 777 2.1E-13 T 31-10-2018 IPR011709 Domain of unknown function DUF1605 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Gene3D G3DSA:1.20.120.1080 461 564 1.2E-20 T 31-10-2018 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Gene3D G3DSA:3.40.50.300 253 432 1.8E-55 T 31-10-2018 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 SMART SM00490 316 416 3.1E-14 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 SUPERFAMILY SSF52540 77 613 4.35E-101 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 SMART SM00487 75 259 3.1E-28 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Gene3D G3DSA:3.40.50.300 38 252 2.1E-80 T 31-10-2018 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 48 621 6.0E-269 T 31-10-2018 IPR010222 RNA helicase HrpA GO:0004004 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 SMART SM00382 92 382 1.9E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Pfam PF00270 DEAD/DEAH box helicase 84 233 1.0E-7 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_09010 6e8e7c23fcade8bfb82b286b9acd37bc 1373 Pfam PF11898 Domain of unknown function (DUF3418) 793 1369 2.4E-173 T 31-10-2018 IPR024590 RNA helicase HrpA, C-terminal BRM88_17530 ea0eb5ec0c54f9a75abb05319c7568c0 232 SMART SM01160 56 145 3.5E-6 T 31-10-2018 BRM88_17530 ea0eb5ec0c54f9a75abb05319c7568c0 232 SUPERFAMILY SSF144091 3 206 5.23E-45 T 31-10-2018 BRM88_17530 ea0eb5ec0c54f9a75abb05319c7568c0 232 Gene3D G3DSA:1.20.1540.10 1 208 5.4E-35 T 31-10-2018 IPR035952 Rhomboid-like superfamily BRM88_17530 ea0eb5ec0c54f9a75abb05319c7568c0 232 Pfam PF01694 Rhomboid family 59 208 7.9E-40 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 Gene3D G3DSA:2.60.120.10 25 158 4.9E-53 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 ProSitePatterns PS00042 Crp-type HTH domain signature. 188 211 - T 31-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 Gene3D G3DSA:1.10.10.10 159 227 1.6E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 SUPERFAMILY SSF51206 24 155 2.23E-24 T 31-10-2018 IPR018490 Cyclic nucleotide-binding-like BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 SUPERFAMILY SSF46785 159 227 1.14E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 SMART SM00100 18 137 6.5E-22 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 Pfam PF00325 Bacterial regulatory proteins, crp family 186 217 8.4E-14 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 Pfam PF00027 Cyclic nucleotide-binding domain 36 124 3.7E-19 T 31-10-2018 IPR000595 Cyclic nucleotide-binding domain BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 186 202 2.5E-6 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 202 217 2.5E-6 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BRM88_22195 a40fcacb503f7d790a6df549d6a26f5a 230 SMART SM00419 180 228 2.5E-12 T 31-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BRM88_00275 60eee54aeb22837bce756117d730dd49 404 SUPERFAMILY SSF53098 15 367 4.7E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_00275 60eee54aeb22837bce756117d730dd49 404 Pfam PF01609 Transposase DDE domain 89 329 1.7E-25 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_06825 60eee54aeb22837bce756117d730dd49 404 SUPERFAMILY SSF53098 15 367 4.7E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_06825 60eee54aeb22837bce756117d730dd49 404 Pfam PF01609 Transposase DDE domain 89 329 1.7E-25 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_15940 45595ea368e2e7e51759f7729c03ef77 232 Gene3D G3DSA:3.40.50.150 29 230 3.3E-36 T 31-10-2018 BRM88_15940 45595ea368e2e7e51759f7729c03ef77 232 Pfam PF08241 Methyltransferase domain 50 147 2.1E-19 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BRM88_15940 45595ea368e2e7e51759f7729c03ef77 232 SUPERFAMILY SSF53335 15 205 1.82E-32 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00149 Fumarate lyase superfamily signature 147 165 2.1E-20 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.1E-20 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00149 Fumarate lyase superfamily signature 277 293 2.1E-20 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00149 Fumarate lyase superfamily signature 102 120 2.1E-20 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 Gene3D G3DSA:1.10.275.10 3 106 1.3E-36 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 Pfam PF10397 Adenylosuccinate lyase C-terminus 367 443 2.4E-13 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 7 350 2.0E-140 T 31-10-2018 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 SUPERFAMILY SSF48557 6 444 3.61E-110 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00145 Argininosuccinate lyase family signature 277 293 1.8E-6 T 31-10-2018 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00145 Argininosuccinate lyase family signature 142 162 1.8E-6 T 31-10-2018 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.8E-6 T 31-10-2018 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 Gene3D G3DSA:1.20.200.10 107 362 3.8E-90 T 31-10-2018 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 SMART SM00998 365 444 3.8E-21 T 31-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 Gene3D G3DSA:1.10.40.30 364 448 1.0E-20 T 31-10-2018 BRM88_02430 f498dfcbe132af991dcf78ced317cc73 450 Pfam PF00206 Lyase 21 302 9.9E-53 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 303 6.5E-13 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 SUPERFAMILY SSF111369 64 138 4.97E-11 T 31-10-2018 BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 Gene3D G3DSA:2.40.50.100 65 96 6.8E-14 T 31-10-2018 BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 SUPERFAMILY SSF111369 206 278 3.79E-9 T 31-10-2018 BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 Gene3D G3DSA:2.40.30.170 240 355 1.9E-34 T 31-10-2018 BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 Gene3D G3DSA:1.10.287.470 128 197 2.1E-9 T 31-10-2018 BRM88_21235 d9e260eb55d07446cb37a0fa5c6c7192 358 Gene3D G3DSA:1.10.287.470 97 124 6.8E-14 T 31-10-2018 BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 Gene3D G3DSA:1.20.1050.10 89 192 3.9E-67 T 31-10-2018 BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 SUPERFAMILY SSF52833 10 111 1.86E-20 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 193 3.1E-6 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 Gene3D G3DSA:3.40.30.10 11 200 3.9E-67 T 31-10-2018 BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 SUPERFAMILY SSF47616 82 207 2.56E-23 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_14565 a8b4b1d45059145c26ddfba2ac8da169 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 87 1.3E-11 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PIRSF PIRSF000676 17 321 5.9E-76 T 31-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 Pfam PF08544 GHMP kinases C terminal 228 300 1.1E-9 T 31-10-2018 IPR013750 GHMP kinase, C-terminal domain BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 SUPERFAMILY SSF54211 22 180 2.13E-26 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 Hamap MF_00384 Homoserine kinase [thrB]. 23 322 25.735 T 31-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 Pfam PF00288 GHMP kinases N terminal domain 100 166 9.4E-9 T 31-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PRINTS PR00958 Homoserine kinase signature 153 166 8.5E-24 T 31-10-2018 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PRINTS PR00958 Homoserine kinase signature 188 205 8.5E-24 T 31-10-2018 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PRINTS PR00958 Homoserine kinase signature 113 128 8.5E-24 T 31-10-2018 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PRINTS PR00958 Homoserine kinase signature 267 282 8.5E-24 T 31-10-2018 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 PRINTS PR00958 Homoserine kinase signature 28 43 8.5E-24 T 31-10-2018 BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 SUPERFAMILY SSF55060 187 302 9.11E-22 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 Gene3D G3DSA:3.30.70.890 179 313 1.4E-30 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BRM88_11685 044e847afa37d2fa70503d74220ccc31 322 Gene3D G3DSA:3.30.230.10 15 178 5.5E-42 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_05300 852e6b23906705c91fb5d66cdd927c3b 564 Pfam PF11394 Protein of unknown function (DUF2875) 105 553 2.5E-165 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 SUPERFAMILY SSF50104 10 121 1.91E-41 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_06795 63b1e2c8c767148fe064704373dae833 135 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 6 118 27.716 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 8 117 7.6E-44 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 Gene3D G3DSA:2.30.30.790 1 120 2.6E-10 T 31-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 ProSitePatterns PS01015 Ribosomal protein L19 signature. 90 105 - T 31-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 PIRSF PIRSF002191 1 135 2.3E-47 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 Pfam PF01245 Ribosomal protein L19 8 116 3.5E-45 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 PRINTS PR00061 Ribosomal protein L19 signature 38 67 6.3E-36 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 PRINTS PR00061 Ribosomal protein L19 signature 92 117 6.3E-36 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06795 63b1e2c8c767148fe064704373dae833 135 PRINTS PR00061 Ribosomal protein L19 signature 8 37 6.3E-36 T 31-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_01710 8b89dacc192893f92b09ae69f1f67b3c 250 Gene3D G3DSA:3.30.2350.10 14 234 4.0E-54 T 31-10-2018 BRM88_01710 8b89dacc192893f92b09ae69f1f67b3c 250 SUPERFAMILY SSF55120 14 247 1.46E-55 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_01710 8b89dacc192893f92b09ae69f1f67b3c 250 Pfam PF00849 RNA pseudouridylate synthase 29 180 2.1E-27 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_01710 8b89dacc192893f92b09ae69f1f67b3c 250 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 68 82 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 154 1.7E-24 T 31-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 326 2.0E-35 T 31-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:1.10.150.20 245 328 4.1E-36 T 31-10-2018 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF55257 9 232 1.96E-31 T 31-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF47789 250 323 1.83E-25 T 31-10-2018 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 251 307 1.3E-23 T 31-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 SUPERFAMILY SSF56553 53 177 2.35E-42 T 31-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 34.74 T 31-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 4.2E-109 T 31-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:3.30.1360.10 17 227 5.6E-83 T 31-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Gene3D G3DSA:2.170.120.12 53 176 5.6E-83 T 31-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 1.7E-24 T 31-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_18995 62daab23d1271f12095d2da269f76b2e 332 SMART SM00662 23 233 1.2E-106 T 31-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_03885 70128fe3e5367c9888371b848620f088 456 SUPERFAMILY SSF53686 2 321 1.28E-89 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_03885 70128fe3e5367c9888371b848620f088 456 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 302 1.9E-62 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_03885 70128fe3e5367c9888371b848620f088 456 Gene3D G3DSA:3.40.50.1100 40 153 6.5E-105 T 31-10-2018 BRM88_03885 70128fe3e5367c9888371b848620f088 456 Gene3D G3DSA:3.10.580.10 330 453 1.9E-16 T 31-10-2018 BRM88_03885 70128fe3e5367c9888371b848620f088 456 SUPERFAMILY SSF54631 335 452 2.95E-17 T 31-10-2018 BRM88_03885 70128fe3e5367c9888371b848620f088 456 SMART SM00116 343 390 5.1E-7 T 31-10-2018 IPR000644 CBS domain BRM88_03885 70128fe3e5367c9888371b848620f088 456 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 31-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BRM88_03885 70128fe3e5367c9888371b848620f088 456 Pfam PF00571 CBS domain 341 388 8.0E-7 T 31-10-2018 IPR000644 CBS domain BRM88_03885 70128fe3e5367c9888371b848620f088 456 Gene3D G3DSA:3.40.50.1100 9 310 6.5E-105 T 31-10-2018 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 275 4.5E-52 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 Pfam PF02567 Phenazine biosynthesis-like protein 9 271 3.5E-51 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 Gene3D G3DSA:3.10.310.10 129 284 2.5E-67 T 31-10-2018 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 Gene3D G3DSA:3.10.310.10 8 286 2.5E-67 T 31-10-2018 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 PIRSF PIRSF016184 1 292 7.3E-69 T 31-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BRM88_07350 6e5264c66ebbf0a78470682075dfd2b1 293 SUPERFAMILY SSF54506 4 290 1.07E-61 T 31-10-2018 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Pfam PF08245 Mur ligase middle domain 107 302 3.0E-42 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 402 2.3E-9 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Gene3D G3DSA:3.40.1190.10 82 320 3.9E-67 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 SUPERFAMILY SSF63418 2 95 3.4E-21 T 31-10-2018 IPR035911 MurE/MurF, N-terminal BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Gene3D G3DSA:3.90.190.20 322 439 9.6E-28 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 SUPERFAMILY SSF53623 102 320 1.26E-50 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Gene3D G3DSA:3.40.1390.10 1 81 5.3E-23 T 31-10-2018 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 SUPERFAMILY SSF53244 324 433 1.53E-25 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Pfam PF01225 Mur ligase family, catalytic domain 24 93 9.6E-8 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 1 493 32.448 T 31-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20420 6cf06dc4bf558a3c14a6c7182b46de65 503 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 431 6.4E-124 T 31-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 2 571 55.722 T 31-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 345 410 3.8E-14 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 68 130 4.0E-16 T 31-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 SUPERFAMILY SSF56014 424 558 4.97E-33 T 31-10-2018 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Gene3D G3DSA:3.30.413.10 197 333 1.0E-42 T 31-10-2018 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 PRINTS PR00397 Sirohaem Fe-binding site signature 473 491 1.5E-8 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 PRINTS PR00397 Sirohaem Fe-binding site signature 425 443 1.5E-8 T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Gene3D G3DSA:3.90.480.10 73 177 2.1E-25 T 31-10-2018 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 473 489 - T 31-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 426 555 0.055 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 SUPERFAMILY SSF55124 339 415 1.06E-17 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 SUPERFAMILY SSF55124 7 139 2.29E-30 T 31-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 167 321 8.2E-41 T 31-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 SUPERFAMILY SSF56014 140 337 1.44E-53 T 31-10-2018 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 Gene3D G3DSA:3.30.413.10 422 559 9.7E-34 T 31-10-2018 BRM88_18070 77e90fd987938569a6d87d2e3943e6d0 573 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 11 556 2.1E-266 T 31-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Gene3D G3DSA:3.30.1490.20 127 195 2.0E-73 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Pfam PF01820 D-ala D-ala ligase N-terminus 18 102 8.7E-16 T 31-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Gene3D G3DSA:3.30.470.20 101 313 2.0E-73 T 31-10-2018 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 SUPERFAMILY SSF52440 18 112 5.47E-26 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_20395 5a742e114d7c1e68962724d06c908059 318 SUPERFAMILY SSF56059 112 315 3.2E-53 T 31-10-2018 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 79 90 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Gene3D G3DSA:3.40.50.20 5 100 1.9E-27 T 31-10-2018 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Pfam PF07478 D-ala D-ala ligase C-terminus 120 314 2.2E-55 T 31-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 18 317 1.3E-104 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 17 318 35.339 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 PIRSF PIRSF039102 54 318 6.5E-83 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 PIRSF PIRSF039102 17 59 2.1E-8 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20395 5a742e114d7c1e68962724d06c908059 318 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 259 288 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 371 2.2E-154 T 31-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 Pfam PF01702 Queuine tRNA-ribosyltransferase 129 365 2.2E-85 T 31-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 371 1.3E-148 T 31-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 Gene3D G3DSA:3.20.20.105 1 371 8.4E-157 T 31-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 368 55.184 T 31-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_13115 1b2a4615ff9f750ef5c8eda5690c6a83 381 SUPERFAMILY SSF51713 3 368 1.14E-151 T 31-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BRM88_12695 cf248fde194796382a418a823865b956 333 Pfam PF04471 Restriction endonuclease 42 150 9.3E-10 T 31-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 BRM88_12695 cf248fde194796382a418a823865b956 333 SUPERFAMILY SSF52980 46 153 5.9E-6 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 169 375 35.88 T 31-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 339 351 - T 31-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 SUPERFAMILY SSF54211 278 362 4.05E-30 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Gene3D G3DSA:3.30.230.40 276 375 2.1E-34 T 31-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Gene3D G3DSA:3.40.50.1000 1 153 3.1E-34 T 31-10-2018 IPR023214 HAD superfamily BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Gene3D G3DSA:3.30.230.40 157 256 5.4E-37 T 31-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 143 1.5E-34 T 31-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 SUPERFAMILY SSF54211 169 253 2.28E-30 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 198 357 2.9E-63 T 31-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 SUPERFAMILY SSF56784 1 148 2.46E-31 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 1 375 49.72 T 31-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 228 241 - T 31-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 147 1.8E-20 T 31-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 Pfam PF13242 HAD-hyrolase-like 102 153 7.3E-5 T 31-10-2018 BRM88_11750 f3d4857c2747d9056c656890ed314354 375 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 164 1.4E-69 T 31-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 BRM88_09125 8a57ff84fdda5a0ca4d2de14a098f58e 176 SMART SM00260 29 166 2.9E-7 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_09125 8a57ff84fdda5a0ca4d2de14a098f58e 176 Gene3D G3DSA:2.40.50.180 52 135 4.0E-18 T 31-10-2018 BRM88_09125 8a57ff84fdda5a0ca4d2de14a098f58e 176 SUPERFAMILY SSF50341 28 169 1.16E-25 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_09125 8a57ff84fdda5a0ca4d2de14a098f58e 176 Pfam PF01584 CheW-like domain 35 153 3.6E-25 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_13030 9386a5729696d049f8a46ad2e9887d9a 289 Gene3D G3DSA:1.10.3720.10 66 286 2.8E-24 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_13030 9386a5729696d049f8a46ad2e9887d9a 289 SUPERFAMILY SSF161098 27 275 7.85E-30 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_13030 9386a5729696d049f8a46ad2e9887d9a 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 280 8.1E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_13030 9386a5729696d049f8a46ad2e9887d9a 289 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 19 284 8.6E-87 T 31-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 383 562 3.1E-64 T 31-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR01900 YidC translocation/secretion protein signature 498 513 1.7E-16 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR01900 YidC translocation/secretion protein signature 518 542 1.7E-16 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR01900 YidC translocation/secretion protein signature 369 385 1.7E-16 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 Gene3D G3DSA:2.70.98.90 90 361 6.0E-68 T 31-10-2018 IPR038221 YidC, periplasmic domain superfamily BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 381 8.1E-68 T 31-10-2018 IPR028053 Membrane insertase YidC, N-terminal BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 Pfam PF14849 YidC periplasmic domain 95 373 3.7E-64 T 31-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 565 22.015 T 31-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 Pfam PF02096 60Kd inner membrane protein 384 562 1.4E-55 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 244 262 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 278 293 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 492 514 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 445 468 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 529 552 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_24640 c864a3d013c1e3a9650900c4fdf14663 578 PRINTS PR00701 60kDa inner membrane protein signature 188 208 2.6E-49 T 31-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 178 199 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 61 77 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 39 59 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 209 233 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 131 154 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 3.9E-55 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 Pfam PF00459 Inositol monophosphatase family 4 253 7.4E-64 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 Gene3D G3DSA:3.40.190.80 143 268 2.6E-35 T 31-10-2018 BRM88_14270 8179059518ca11e794874062678f960c 277 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 31-10-2018 IPR020583 Inositol monophosphatase, metal-binding site BRM88_14270 8179059518ca11e794874062678f960c 277 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 212 226 - T 31-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 105 124 2.1E-20 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 18 40 2.1E-20 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 199 211 2.1E-20 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BRM88_14270 8179059518ca11e794874062678f960c 277 PRINTS PR01959 SuhB family inositol monophosphatase signature 157 183 2.1E-20 T 31-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BRM88_14270 8179059518ca11e794874062678f960c 277 Gene3D G3DSA:3.30.540.10 1 141 2.2E-46 T 31-10-2018 BRM88_14270 8179059518ca11e794874062678f960c 277 SUPERFAMILY SSF56655 5 264 4.71E-78 T 31-10-2018 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 18 366 3.8E-108 T 31-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 5 368 70.077 T 31-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 Gene3D G3DSA:1.20.1090.10 180 369 1.9E-61 T 31-10-2018 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 Pfam PF01761 3-dehydroquinate synthase 74 337 1.6E-102 T 31-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 Gene3D G3DSA:3.40.50.1970 4 179 1.2E-58 T 31-10-2018 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 SUPERFAMILY SSF56796 15 368 1.05E-103 T 31-10-2018 BRM88_06365 954024c7f2d4b0fd64c81e7a8147719a 370 PIRSF PIRSF001455 21 369 3.2E-102 T 31-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BRM88_19110 ea139b1d4018f0d385a0d6be2db294a9 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 198 1.7E-64 T 31-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19110 ea139b1d4018f0d385a0d6be2db294a9 201 SUPERFAMILY SSF52166 10 200 5.36E-62 T 31-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19110 ea139b1d4018f0d385a0d6be2db294a9 201 Gene3D G3DSA:3.40.1370.10 6 201 2.4E-60 T 31-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19110 ea139b1d4018f0d385a0d6be2db294a9 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 8 201 29.477 T 31-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19110 ea139b1d4018f0d385a0d6be2db294a9 201 Pfam PF00573 Ribosomal protein L4/L1 family 12 198 2.5E-55 T 31-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 BRM88_05345 f5fbb0051548223040b2f5bb23f21134 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 299 4.3E-44 T 31-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 BRM88_05345 f5fbb0051548223040b2f5bb23f21134 349 Gene3D G3DSA:3.40.50.2000 3 155 2.3E-20 T 31-10-2018 BRM88_05345 f5fbb0051548223040b2f5bb23f21134 349 Gene3D G3DSA:3.40.50.2000 161 342 4.4E-39 T 31-10-2018 BRM88_05345 f5fbb0051548223040b2f5bb23f21134 349 SUPERFAMILY SSF53756 8 345 5.76E-77 T 31-10-2018 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 SUPERFAMILY SSF53748 3 387 8.6E-145 T 31-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PIRSF PIRSF000724 1 391 5.7E-133 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 388 38.403 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 308 333 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 341 352 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 364 381 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.2E-81 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 Pfam PF00162 Phosphoglycerate kinase 6 378 5.1E-141 T 31-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 Gene3D G3DSA:3.40.50.1260 165 378 3.0E-147 T 31-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 31-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18160 5abba52152017e4f34fea1388ba3a7d7 391 Gene3D G3DSA:3.40.50.1260 8 386 3.0E-147 T 31-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SMART SM00387 300 417 1.2E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Gene3D G3DSA:1.10.287.130 168 251 4.8E-25 T 31-10-2018 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 300 416 1.7E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Gene3D G3DSA:1.20.120.160 597 714 3.5E-13 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SUPERFAMILY SSF47226 601 712 8.77E-17 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Pfam PF00072 Response regulator receiver domain 464 576 3.9E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Pfam PF01627 Hpt domain 624 698 2.7E-6 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SUPERFAMILY SSF55874 243 413 3.54E-35 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SMART SM00388 188 253 8.1E-24 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Gene3D G3DSA:3.40.50.2300 447 589 2.2E-38 T 31-10-2018 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 370 1.2E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 356 1.2E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 395 1.2E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SMART SM00073 613 711 4.3E-19 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SUPERFAMILY SSF47384 171 254 1.82E-20 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Gene3D G3DSA:3.30.565.10 252 418 1.1E-41 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SUPERFAMILY SSF52172 459 580 3.7E-32 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 SMART SM00448 461 576 2.1E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15295 f98cb57771524ffb581a05bb83bfbf84 725 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 253 8.4E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_06460 ad8ca3f23a9b874e5bedd4f66b705b94 334 Gene3D G3DSA:3.60.15.10 57 334 3.1E-62 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_06460 ad8ca3f23a9b874e5bedd4f66b705b94 334 Pfam PF12706 Beta-lactamase superfamily domain 88 300 3.7E-20 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_06460 ad8ca3f23a9b874e5bedd4f66b705b94 334 SUPERFAMILY SSF56281 59 333 4.33E-48 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_06460 ad8ca3f23a9b874e5bedd4f66b705b94 334 SMART SM00849 76 277 0.0062 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 SUPERFAMILY SSF50182 132 198 1.41E-16 T 31-10-2018 IPR010920 LSM domain superfamily BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 162 196 - T 31-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 SUPERFAMILY SSF82689 201 297 2.88E-26 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 Gene3D G3DSA:3.30.70.100 200 291 1.1E-21 T 31-10-2018 BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 SUPERFAMILY SSF82861 47 131 3.4E-18 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 Pfam PF00924 Mechanosensitive ion channel 90 287 6.3E-50 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BRM88_11515 e48c7b1e6f8565835a29a7df564833da 328 Gene3D G3DSA:2.30.30.60 148 197 7.0E-15 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 555 709 7.1E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SMART SM00304 442 494 25.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SMART SM00304 215 267 8.6E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SMART SM00283 495 742 6.8E-90 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Gene3D G3DSA:1.20.1480.50 173 274 6.1E-12 T 31-10-2018 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SUPERFAMILY SSF55785 264 382 2.15E-5 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Gene3D G3DSA:1.10.287.950 445 744 4.7E-84 T 31-10-2018 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SUPERFAMILY SSF158472 215 260 4.18E-7 T 31-10-2018 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 185 1.1E-15 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 SUPERFAMILY SSF58104 462 743 6.28E-71 T 31-10-2018 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Pfam PF00672 HAMP domain 215 260 1.2E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15220 dbf603b0dd53ef936dcea1f23cfa2f4c 799 Gene3D G3DSA:3.30.450.20 276 398 3.9E-20 T 31-10-2018 BRM88_00540 f37b4d41cf8932ff6b8a1304c01c457b 156 Pfam PF05932 Tir chaperone protein (CesT) family 51 131 2.4E-6 T 31-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BRM88_00540 f37b4d41cf8932ff6b8a1304c01c457b 156 SUPERFAMILY SSF69635 52 133 8.37E-7 T 31-10-2018 BRM88_00540 f37b4d41cf8932ff6b8a1304c01c457b 156 Gene3D G3DSA:3.30.1460.10 3 136 3.1E-7 T 31-10-2018 BRM88_21060 29b6b1dfe897e94958f6b587c11998e1 284 Gene3D G3DSA:3.60.10.10 29 283 1.0E-81 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_21060 29b6b1dfe897e94958f6b587c11998e1 284 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 34 273 1.9E-16 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BRM88_21060 29b6b1dfe897e94958f6b587c11998e1 284 SUPERFAMILY SSF56219 17 283 3.93E-41 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_03410 9c630ec12a17d2afa6eb9941174e7095 94 Pfam PF13223 Protein of unknown function (DUF4031) 3 79 3.4E-29 T 31-10-2018 IPR025109 Domain of unknown function DUF4031 BRM88_04715 a559a014a2e75f11aa35404664c43025 218 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 9 175 2.7E-31 T 31-10-2018 BRM88_04715 a559a014a2e75f11aa35404664c43025 218 Gene3D G3DSA:3.40.50.150 3 210 1.1E-49 T 31-10-2018 BRM88_04715 a559a014a2e75f11aa35404664c43025 218 SUPERFAMILY SSF53335 3 181 3.68E-44 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 39.316 T 31-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Gene3D G3DSA:3.60.20.10 2 239 2.2E-77 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Pfam PF01380 SIS domain 463 591 2.7E-26 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Pfam PF01380 SIS domain 290 416 4.2E-28 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Gene3D G3DSA:3.40.50.10490 248 608 1.6E-142 T 31-10-2018 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 SUPERFAMILY SSF56235 2 233 3.0E-71 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 SUPERFAMILY SSF53697 244 609 5.47E-109 T 31-10-2018 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Pfam PF13522 Glutamine amidotransferase domain 60 191 1.1E-22 T 31-10-2018 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 1.1E-259 T 31-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BRM88_03725 339e386912307d7a7ce00b03eaf84b21 609 Gene3D G3DSA:3.40.50.10490 447 594 1.6E-142 T 31-10-2018 BRM88_19535 1ff1f18b72d651d5763c335ebc313b1c 171 SUPERFAMILY SSF54427 38 158 1.85E-31 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_19535 1ff1f18b72d651d5763c335ebc313b1c 171 Pfam PF08332 Calcium/calmodulin dependent protein kinase II association domain 37 159 9.9E-46 T 31-10-2018 IPR013543 Calcium/calmodulin-dependent protein kinase II, association-domain GO:0004683|GO:0005516|GO:0006468 Reactome: R-HSA-3371571|Reactome: R-HSA-399719|Reactome: R-HSA-438066|Reactome: R-HSA-442729|Reactome: R-HSA-442742|Reactome: R-HSA-442982|Reactome: R-HSA-5576892|Reactome: R-HSA-5578775|Reactome: R-HSA-5673001|Reactome: R-HSA-877300|Reactome: R-HSA-936837 BRM88_19535 1ff1f18b72d651d5763c335ebc313b1c 171 PIRSF PIRSF028470 1 162 3.2E-71 T 31-10-2018 IPR016887 Uncharacterised conserved protein UCP028470, steroid isomerase-related BRM88_19535 1ff1f18b72d651d5763c335ebc313b1c 171 Gene3D G3DSA:3.10.450.50 19 171 2.2E-54 T 31-10-2018 BRM88_19535 1ff1f18b72d651d5763c335ebc313b1c 171 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 36 159 1.3E-39 T 31-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 SUPERFAMILY SSF54211 5 184 2.63E-45 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 ProSitePatterns PS01277 Ribonuclease PH signature. 119 132 - T 31-10-2018 IPR018336 Ribonuclease PH, conserved site BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 Pfam PF03725 3' exoribonuclease family, domain 2 161 227 1.9E-9 T 31-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 Gene3D G3DSA:3.30.230.70 13 240 9.0E-62 T 31-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 SUPERFAMILY SSF55666 156 239 2.09E-24 T 31-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 Hamap MF_00564 Ribonuclease PH [rph]. 14 240 45.508 T 31-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 Pfam PF01138 3' exoribonuclease family, domain 1 13 143 3.9E-22 T 31-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BRM88_05830 b2af72d79761820e8f350e00e21fab34 241 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 5 239 2.3E-115 T 31-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BRM88_19795 80e3aa376b5df3dd47972ce4000825ad 154 Pfam PF00072 Response regulator receiver domain 11 117 1.5E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_19795 80e3aa376b5df3dd47972ce4000825ad 154 SUPERFAMILY SSF52172 9 142 3.98E-31 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_19795 80e3aa376b5df3dd47972ce4000825ad 154 Gene3D G3DSA:3.40.50.12740 8 152 1.8E-32 T 31-10-2018 BRM88_19795 80e3aa376b5df3dd47972ce4000825ad 154 SMART SM00448 9 124 1.3E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 6.2E-81 T 31-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 1.9E-172 T 31-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 2.4E-24 T 31-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 SUPERFAMILY SSF51246 329 424 2.67E-27 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Gene3D G3DSA:3.30.470.20 191 329 3.1E-58 T 31-10-2018 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 SMART SM01209 103 296 1.6E-139 T 31-10-2018 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 SUPERFAMILY SSF52440 1 103 6.47E-36 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 42.434 T 31-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 SUPERFAMILY SSF56059 104 322 2.65E-67 T 31-10-2018 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 2.2E-34 T 31-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Gene3D G3DSA:3.40.50.20 2 95 3.5E-37 T 31-10-2018 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 SMART SM01210 330 423 2.1E-44 T 31-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Gene3D G3DSA:3.90.600.10 331 429 4.0E-28 T 31-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 31-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_02715 4b16882631512687b1afa9a651ea850b 429 Gene3D G3DSA:3.30.1490.20 121 190 4.4E-28 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 SMART SM00363 28 86 2.2E-10 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 Gene3D G3DSA:3.30.70.1560 153 248 3.6E-46 T 31-10-2018 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 95 256 2.2E-49 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 SUPERFAMILY SSF55174 26 114 1.91E-16 T 31-10-2018 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 129 143 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 Pfam PF00849 RNA pseudouridylate synthase 91 226 5.9E-16 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 Gene3D G3DSA:3.30.70.580 93 255 3.6E-46 T 31-10-2018 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 SUPERFAMILY SSF55120 87 260 3.84E-36 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 Pfam PF01479 S4 domain 28 73 1.2E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_11260 239c25bdf7901bbc7680938bd10741d0 546 Gene3D G3DSA:3.10.290.10 25 80 6.6E-16 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 28 513 7.4E-114 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 Pfam PF07690 Major Facilitator Superfamily 33 425 2.2E-50 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 151 175 9.5E-5 T 31-10-2018 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 30 54 9.5E-5 T 31-10-2018 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 PRINTS PR01036 Tetracycline resistance protein TetB signature 121 141 9.5E-5 T 31-10-2018 BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 SUPERFAMILY SSF103473 21 524 4.32E-64 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_14680 e5c454f892c5413ecea9ce47abdc35d7 528 Gene3D G3DSA:1.20.1720.10 28 233 2.5E-40 T 31-10-2018 BRM88_16540 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_16540 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_16540 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_14525 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14525 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14525 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_02870 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_02870 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_02870 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_11245 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_11245 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_11245 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_03130 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_03130 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_03130 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_20865 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_20865 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_20865 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_10885 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10885 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10885 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_17765 254bedf67c8292a1ccb7b9dadf744af6 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17765 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17765 254bedf67c8292a1ccb7b9dadf744af6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_09520 6dae553e4d8ceebbaa12289d92f9f4bf 460 Pfam PF03313 Serine dehydratase alpha chain 189 454 1.9E-105 T 31-10-2018 IPR005130 Serine dehydratase-like, alpha subunit BRM88_09520 6dae553e4d8ceebbaa12289d92f9f4bf 460 Gene3D G3DSA:3.30.1330.90 11 162 1.7E-56 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BRM88_09520 6dae553e4d8ceebbaa12289d92f9f4bf 460 Pfam PF03315 Serine dehydratase beta chain 4 158 3.3E-58 T 31-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BRM88_09520 6dae553e4d8ceebbaa12289d92f9f4bf 460 SUPERFAMILY SSF143548 17 158 5.75E-44 T 31-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BRM88_09520 6dae553e4d8ceebbaa12289d92f9f4bf 460 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 457 8.4E-218 T 31-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 Gene3D G3DSA:3.30.360.10 122 207 2.6E-65 T 31-10-2018 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 120 8.3E-25 T 31-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 123 237 4.7E-32 T 31-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 238 28.752 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 SUPERFAMILY SSF51735 5 237 1.48E-33 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 168 6.3E-42 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 PIRSF PIRSF000161 4 238 6.8E-72 T 31-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 144 161 - T 31-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 SUPERFAMILY SSF55347 122 209 1.79E-22 T 31-10-2018 BRM88_15400 2b033dcd3e485139dbd4751888e873d9 238 Gene3D G3DSA:3.40.50.720 9 237 2.6E-65 T 31-10-2018 BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 16 94 1.7E-33 T 31-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 Gene3D G3DSA:3.40.30.10 14 98 6.5E-24 T 31-10-2018 BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 ProSitePatterns PS00195 Glutaredoxin active site. 18 34 - T 31-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 PRINTS PR00160 Glutaredoxin signature 16 34 2.9E-11 T 31-10-2018 IPR014025 Glutaredoxin subgroup BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 PRINTS PR00160 Glutaredoxin signature 58 71 2.9E-11 T 31-10-2018 IPR014025 Glutaredoxin subgroup BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 PRINTS PR00160 Glutaredoxin signature 72 85 2.9E-11 T 31-10-2018 IPR014025 Glutaredoxin subgroup BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 Pfam PF00462 Glutaredoxin 16 75 6.7E-17 T 31-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BRM88_19565 645dd9482d86f1040645452b406b8d3e 102 SUPERFAMILY SSF52833 9 95 1.45E-26 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_16790 d3c9bf649ecacdac83b5bbb434f6b66c 312 Pfam PF05544 Proline racemase 6 310 8.1E-105 T 31-10-2018 IPR008794 Proline racemase family BRM88_16790 d3c9bf649ecacdac83b5bbb434f6b66c 312 Gene3D G3DSA:3.10.310.10 134 288 1.3E-113 T 31-10-2018 BRM88_16790 d3c9bf649ecacdac83b5bbb434f6b66c 312 PIRSF PIRSF029792 1 312 5.6E-99 T 31-10-2018 IPR008794 Proline racemase family BRM88_16790 d3c9bf649ecacdac83b5bbb434f6b66c 312 Gene3D G3DSA:3.10.310.10 4 306 1.3E-113 T 31-10-2018 BRM88_16790 d3c9bf649ecacdac83b5bbb434f6b66c 312 SUPERFAMILY SSF54506 2 310 8.3E-92 T 31-10-2018 BRM88_12690 effe7277697b581ffc6fc4af38bb4083 187 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 20 142 7.4E-40 T 31-10-2018 IPR008769 Poly granule associated BRM88_12690 effe7277697b581ffc6fc4af38bb4083 187 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 28 144 6.0E-47 T 31-10-2018 IPR008769 Poly granule associated BRM88_01490 36cf61b5af5236a85a322acb7aefae9c 352 Pfam PF04333 MlaA lipoprotein 120 311 3.9E-70 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BRM88_01490 36cf61b5af5236a85a322acb7aefae9c 352 PRINTS PR01805 VacJ lipoprotein signature 225 242 1.5E-22 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BRM88_01490 36cf61b5af5236a85a322acb7aefae9c 352 PRINTS PR01805 VacJ lipoprotein signature 121 134 1.5E-22 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BRM88_01490 36cf61b5af5236a85a322acb7aefae9c 352 PRINTS PR01805 VacJ lipoprotein signature 138 154 1.5E-22 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BRM88_01490 36cf61b5af5236a85a322acb7aefae9c 352 PRINTS PR01805 VacJ lipoprotein signature 189 206 1.5E-22 T 31-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Gene3D G3DSA:3.55.50.10 43 77 2.2E-20 T 31-10-2018 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 44 388 4.1E-37 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Gene3D G3DSA:2.40.50.230 283 387 3.8E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 618 774 5.2E-33 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Gene3D G3DSA:3.30.1920.30 113 176 2.2E-20 T 31-10-2018 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 453 557 1.3E-33 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Gene3D G3DSA:2.30.110.50 78 221 2.2E-20 T 31-10-2018 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 SUPERFAMILY SSF69255 289 383 5.89E-25 T 31-10-2018 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 SUPERFAMILY SSF69279 98 278 8.67E-10 T 31-10-2018 BRM88_07490 9ad1ede3b909ef07c7c51ae09fdb33ef 807 Pfam PF05954 Phage late control gene D protein (GPD) 44 223 4.6E-25 T 31-10-2018 BRM88_02105 99c3fa06cf74885f1e3311e546b24ce1 227 Gene3D G3DSA:3.40.50.300 7 201 2.3E-48 T 31-10-2018 BRM88_02105 99c3fa06cf74885f1e3311e546b24ce1 227 Hamap MF_00165 Thymidylate kinase [tmk]. 10 200 22.189 T 31-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BRM88_02105 99c3fa06cf74885f1e3311e546b24ce1 227 SUPERFAMILY SSF52540 9 197 4.05E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02105 99c3fa06cf74885f1e3311e546b24ce1 227 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 9 188 1.9E-41 T 31-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BRM88_02105 99c3fa06cf74885f1e3311e546b24ce1 227 Pfam PF02223 Thymidylate kinase 14 187 1.3E-39 T 31-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 BRM88_15675 32a23da6717f8049ec39351fa4d9a17f 162 Gene3D G3DSA:1.10.10.10 17 64 4.3E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15675 32a23da6717f8049ec39351fa4d9a17f 162 Pfam PF02631 RecX family 41 156 4.7E-26 T 31-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BRM88_15675 32a23da6717f8049ec39351fa4d9a17f 162 Gene3D G3DSA:1.10.10.10 111 162 1.7E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15675 32a23da6717f8049ec39351fa4d9a17f 162 Gene3D G3DSA:1.10.10.10 65 110 3.2E-17 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15675 32a23da6717f8049ec39351fa4d9a17f 162 Hamap MF_01114 Regulatory protein RecX [recX]. 11 162 13.911 T 31-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BRM88_09815 6d7d97070b631d8a440af24274628902 942 Gene3D G3DSA:2.40.128.130 632 942 3.2E-41 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_09815 6d7d97070b631d8a440af24274628902 942 Pfam PF12951 Passenger-associated-transport-repeat 411 440 3.2E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_09815 6d7d97070b631d8a440af24274628902 942 SUPERFAMILY SSF52743 66 381 7.07E-58 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_09815 6d7d97070b631d8a440af24274628902 942 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 410 440 4.2E-11 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_09815 6d7d97070b631d8a440af24274628902 942 Gene3D G3DSA:3.40.50.200 32 381 6.9E-63 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_09815 6d7d97070b631d8a440af24274628902 942 PRINTS PR00723 Subtilisin serine protease family (S8) signature 320 336 4.1E-14 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_09815 6d7d97070b631d8a440af24274628902 942 PRINTS PR00723 Subtilisin serine protease family (S8) signature 124 137 4.1E-14 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_09815 6d7d97070b631d8a440af24274628902 942 PRINTS PR00723 Subtilisin serine protease family (S8) signature 83 102 4.1E-14 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_09815 6d7d97070b631d8a440af24274628902 942 Pfam PF00082 Subtilase family 83 371 8.7E-36 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_09815 6d7d97070b631d8a440af24274628902 942 SMART SM00869 676 932 2.0E-25 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_09815 6d7d97070b631d8a440af24274628902 942 SUPERFAMILY SSF103515 641 942 4.45E-36 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_09815 6d7d97070b631d8a440af24274628902 942 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 321 331 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BRM88_09815 6d7d97070b631d8a440af24274628902 942 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 88 99 - T 31-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BRM88_09815 6d7d97070b631d8a440af24274628902 942 Pfam PF03797 Autotransporter beta-domain 680 922 8.0E-33 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 Pfam PF08544 GHMP kinases C terminal 214 269 4.5E-6 T 31-10-2018 IPR013750 GHMP kinase, C-terminal domain BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 PIRSF PIRSF010376 13 291 1.7E-85 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 Pfam PF00288 GHMP kinases N terminal domain 99 155 3.1E-11 T 31-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 16 286 1.9E-72 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 SUPERFAMILY SSF55060 172 287 2.59E-25 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 SUPERFAMILY SSF54211 17 170 1.14E-43 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 Gene3D G3DSA:3.30.230.10 5 171 5.8E-55 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 Gene3D G3DSA:3.30.70.890 172 290 1.5E-25 T 31-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BRM88_19250 5f7a2edf31481959ab16287aeb2e132e 295 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 15 283 32.144 T 31-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BRM88_04470 8d971d3327f63afe655744312f88a4fd 357 Gene3D G3DSA:3.30.160.60 313 350 2.7E-11 T 31-10-2018 BRM88_04470 8d971d3327f63afe655744312f88a4fd 357 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 19 345 2.5E-76 T 31-10-2018 IPR003770 Endolytic murein transglycosylase BRM88_04470 8d971d3327f63afe655744312f88a4fd 357 Pfam PF02618 YceG-like family 51 339 3.9E-74 T 31-10-2018 IPR003770 Endolytic murein transglycosylase BRM88_04470 8d971d3327f63afe655744312f88a4fd 357 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 21 345 31.955 T 31-10-2018 IPR003770 Endolytic murein transglycosylase BRM88_09360 bea19f5a7ebecf66f923b25a078aaf90 185 Gene3D G3DSA:3.90.79.10 19 184 5.9E-43 T 31-10-2018 BRM88_09360 bea19f5a7ebecf66f923b25a078aaf90 185 ProSitePatterns PS00893 Nudix box signature. 81 102 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_09360 bea19f5a7ebecf66f923b25a078aaf90 185 SUPERFAMILY SSF55811 10 181 1.27E-36 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_09360 bea19f5a7ebecf66f923b25a078aaf90 185 Pfam PF00293 NUDIX domain 47 159 1.1E-15 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_24340 6a3d43153efbc650d8a04cb029e92873 375 SUPERFAMILY SSF102114 74 295 8.89E-10 T 31-10-2018 BRM88_24340 6a3d43153efbc650d8a04cb029e92873 375 Gene3D G3DSA:3.80.30.30 132 300 1.8E-8 T 31-10-2018 BRM88_24340 6a3d43153efbc650d8a04cb029e92873 375 SMART SM00729 85 310 5.6E-4 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_24340 6a3d43153efbc650d8a04cb029e92873 375 Pfam PF04055 Radical SAM superfamily 89 267 1.1E-13 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 82 289 2.1E-45 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 Pfam PF07549 SecD/SecF GG Motif 38 64 1.7E-7 T 31-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 SUPERFAMILY SSF82866 77 297 5.36E-35 T 31-10-2018 BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 43 292 4.7E-63 T 31-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 15 303 26.399 T 31-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 Gene3D G3DSA:1.20.1640.10 141 306 4.7E-10 T 31-10-2018 BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 PRINTS PR01755 Bacterial translocase SecF protein signature 240 255 2.3E-27 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 PRINTS PR01755 Bacterial translocase SecF protein signature 161 175 2.3E-27 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 PRINTS PR01755 Bacterial translocase SecF protein signature 209 227 2.3E-27 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 PRINTS PR01755 Bacterial translocase SecF protein signature 42 57 2.3E-27 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13100 998708d61077ee4da3c2fc1ff87760b9 322 Pfam PF02355 Protein export membrane protein 127 296 1.4E-47 T 31-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BRM88_06085 53dba7254208921496d2c33102d75e16 258 Gene3D G3DSA:3.40.190.10 30 254 5.8E-90 T 31-10-2018 BRM88_06085 53dba7254208921496d2c33102d75e16 258 SUPERFAMILY SSF53850 28 254 4.18E-65 T 31-10-2018 BRM88_06085 53dba7254208921496d2c33102d75e16 258 Pfam PF13531 Bacterial extracellular solute-binding protein 29 254 1.3E-47 T 31-10-2018 BRM88_06085 53dba7254208921496d2c33102d75e16 258 Gene3D G3DSA:3.40.190.10 107 218 5.8E-90 T 31-10-2018 BRM88_06085 53dba7254208921496d2c33102d75e16 258 PIRSF PIRSF004846 2 258 6.5E-70 T 31-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BRM88_06085 53dba7254208921496d2c33102d75e16 258 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 253 1.1E-59 T 31-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 SUPERFAMILY SSF55103 189 460 1.8E-55 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Gene3D G3DSA:3.30.43.10 1 92 2.0E-23 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Gene3D G3DSA:3.30.70.2190 216 332 2.2E-25 T 31-10-2018 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Pfam PF02913 FAD linked oxidases, C-terminal domain 218 459 4.2E-54 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Gene3D G3DSA:3.30.465.10 95 214 1.3E-40 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Gene3D G3DSA:1.10.45.10 420 459 6.4E-14 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Gene3D G3DSA:3.30.70.2740 334 419 2.0E-26 T 31-10-2018 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 SUPERFAMILY SSF56176 9 216 5.09E-66 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BRM88_11170 032af17d67758bfef9698c7dbcdcdcb0 472 Pfam PF01565 FAD binding domain 40 178 2.6E-38 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BRM88_06480 9e6048f9a19c9d25e9dcd8eeba4ace13 460 Gene3D G3DSA:1.20.1740.10 20 458 1.7E-61 T 31-10-2018 BRM88_06480 9e6048f9a19c9d25e9dcd8eeba4ace13 460 PIRSF PIRSF006060 3 457 1.9E-61 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_06480 9e6048f9a19c9d25e9dcd8eeba4ace13 460 Pfam PF13520 Amino acid permease 40 401 5.9E-30 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 Gene3D G3DSA:1.10.10.10 16 162 4.3E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 SUPERFAMILY SSF46785 22 160 3.84E-29 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 SMART SM00347 45 147 1.3E-22 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 Pfam PF01047 MarR family 52 111 1.6E-13 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 107 123 1.8E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 137 157 1.8E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 87 1.8E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_12420 c4c5482a22db72949f4d57daffa2cf7e 166 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 103 1.8E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_11305 228959d287dd77793b04571d2254ab9f 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 287 8.5E-19 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_11305 228959d287dd77793b04571d2254ab9f 294 Gene3D G3DSA:1.10.3720.10 51 292 5.2E-78 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_11305 228959d287dd77793b04571d2254ab9f 294 SUPERFAMILY SSF161098 55 281 2.49E-63 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_15265 2bacbf4e6cf0211a836344b50ca6f9de 136 Gene3D G3DSA:3.40.50.1010 3 125 7.4E-11 T 31-10-2018 BRM88_15265 2bacbf4e6cf0211a836344b50ca6f9de 136 Pfam PF01850 PIN domain 3 121 1.2E-7 T 31-10-2018 IPR002716 PIN domain BRM88_15265 2bacbf4e6cf0211a836344b50ca6f9de 136 SUPERFAMILY SSF88723 1 122 6.17E-13 T 31-10-2018 IPR029060 PIN-like domain superfamily BRM88_19010 147401c8823158612e31d07ee53431b0 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 2.7E-30 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19010 147401c8823158612e31d07ee53431b0 118 Gene3D G3DSA:1.10.8.50 1 71 1.7E-27 T 31-10-2018 BRM88_19010 147401c8823158612e31d07ee53431b0 118 PIRSF PIRSF002134 1 118 1.2E-41 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19010 147401c8823158612e31d07ee53431b0 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 31-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19010 147401c8823158612e31d07ee53431b0 118 SUPERFAMILY SSF46946 2 114 2.94E-43 T 31-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BRM88_19010 147401c8823158612e31d07ee53431b0 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.773 T 31-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19010 147401c8823158612e31d07ee53431b0 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 5.2E-51 T 31-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19010 147401c8823158612e31d07ee53431b0 118 Gene3D G3DSA:4.10.910.10 72 118 1.9E-24 T 31-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_04545 83198bfe7c2bef83c1d245a1509f1fb6 738 Pfam PF00593 TonB dependent receptor 269 735 2.1E-39 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_04545 83198bfe7c2bef83c1d245a1509f1fb6 738 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 162 3.8E-10 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_04545 83198bfe7c2bef83c1d245a1509f1fb6 738 SUPERFAMILY SSF56935 29 738 3.66E-96 T 31-10-2018 BRM88_04545 83198bfe7c2bef83c1d245a1509f1fb6 738 Gene3D G3DSA:2.40.170.20 44 738 1.0E-118 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_04930 5de757efcf62919bdfe8ab70ed028472 375 Pfam PF00924 Mechanosensitive ion channel 139 331 1.5E-23 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BRM88_04930 5de757efcf62919bdfe8ab70ed028472 375 SUPERFAMILY SSF50182 179 244 7.85E-13 T 31-10-2018 IPR010920 LSM domain superfamily BRM88_19255 7295d2176a612761e9d80daceb6bc2e4 217 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 4 215 24.203 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BRM88_19255 7295d2176a612761e9d80daceb6bc2e4 217 Gene3D G3DSA:2.50.20.10 39 216 1.4E-38 T 31-10-2018 BRM88_19255 7295d2176a612761e9d80daceb6bc2e4 217 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 47 214 6.4E-25 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BRM88_19255 7295d2176a612761e9d80daceb6bc2e4 217 SUPERFAMILY SSF89392 44 215 5.89E-38 T 31-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX BRM88_19255 7295d2176a612761e9d80daceb6bc2e4 217 Pfam PF03550 Outer membrane lipoprotein LolB 58 213 3.2E-39 T 31-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BRM88_20430 ecb46c062f81759add02a0e288482783 625 Gene3D G3DSA:3.40.710.10 289 470 6.0E-112 T 31-10-2018 BRM88_20430 ecb46c062f81759add02a0e288482783 625 Gene3D G3DSA:3.90.1310.30 56 228 5.6E-50 T 31-10-2018 BRM88_20430 ecb46c062f81759add02a0e288482783 625 SUPERFAMILY SSF56519 60 227 5.76E-47 T 31-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BRM88_20430 ecb46c062f81759add02a0e288482783 625 SUPERFAMILY SSF56601 180 575 2.39E-95 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_20430 ecb46c062f81759add02a0e288482783 625 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 549 1.8E-80 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BRM88_20430 ecb46c062f81759add02a0e288482783 625 Gene3D G3DSA:3.30.450.330 229 553 6.0E-112 T 31-10-2018 BRM88_20430 ecb46c062f81759add02a0e288482783 625 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 16 564 43.267 T 31-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_20430 ecb46c062f81759add02a0e288482783 625 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 212 7.5E-20 T 31-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BRM88_21560 ad87992f28d627f8fd8ec9eb88896746 648 SUPERFAMILY SSF82171 29 381 3.27E-11 T 31-10-2018 BRM88_21560 ad87992f28d627f8fd8ec9eb88896746 648 Gene3D G3DSA:3.40.50.1820 382 647 1.0E-65 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21560 ad87992f28d627f8fd8ec9eb88896746 648 SUPERFAMILY SSF53474 391 643 1.75E-64 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21560 ad87992f28d627f8fd8ec9eb88896746 648 Pfam PF00326 Prolyl oligopeptidase family 435 644 3.1E-41 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_21305 912c3144a177e3eb8c4d8ffe1bb379f8 132 PIRSF PIRSF016789 7 127 4.3E-30 T 31-10-2018 IPR007401 Protein of unknown function DUF454 BRM88_21305 912c3144a177e3eb8c4d8ffe1bb379f8 132 Pfam PF04304 Protein of unknown function (DUF454) 8 122 5.9E-34 T 31-10-2018 IPR007401 Protein of unknown function DUF454 BRM88_09245 321993f295a2e544181437c82c2ea813 487 PIRSF PIRSF028846 50 486 3.9E-197 T 31-10-2018 IPR008313 Metal-independent alpha-mannosidase BRM88_09245 321993f295a2e544181437c82c2ea813 487 Gene3D G3DSA:1.50.10.10 56 487 1.0E-166 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_09245 321993f295a2e544181437c82c2ea813 487 SUPERFAMILY SSF48208 42 484 6.05E-168 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_09245 321993f295a2e544181437c82c2ea813 487 Pfam PF06824 Metal-independent alpha-mannosidase (GH125) 72 474 3.4E-149 T 31-10-2018 IPR008313 Metal-independent alpha-mannosidase BRM88_09245 321993f295a2e544181437c82c2ea813 487 SMART SM01149 72 475 4.2E-251 T 31-10-2018 IPR008313 Metal-independent alpha-mannosidase BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 SUPERFAMILY SSF52016 654 916 2.35E-83 T 31-10-2018 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Pfam PF00330 Aconitase family (aconitate hydratase) 67 585 5.1E-180 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Pfam PF00694 Aconitase C-terminal domain 715 846 3.3E-45 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Gene3D G3DSA:3.30.499.20 5 371 1.0E-157 T 31-10-2018 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Gene3D G3DSA:3.30.499.10 372 613 2.1E-97 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 SUPERFAMILY SSF53732 3 649 4.05E-222 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Gene3D G3DSA:1.10.1440.20 614 675 3.6E-23 T 31-10-2018 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 ProSitePatterns PS01244 Aconitase family signature 2. 516 529 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 16 916 0.0 T 31-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 215 230 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 291 304 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 277 290 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 371 385 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 454 465 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 201 214 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 144 157 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 168 176 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 PRINTS PR00415 Aconitase family signature 516 529 1.0E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 ProSitePatterns PS00450 Aconitase family signature 1. 450 466 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BRM88_15275 0b151d389ecaf373a8e69bc9e19cb7a4 922 Gene3D G3DSA:3.20.19.10 677 918 9.1E-102 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 ProSitePatterns PS01219 Ammonium transporters signature. 246 271 - T 31-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 SUPERFAMILY SSF111352 84 470 1.57E-122 T 31-10-2018 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 TIGRFAM TIGR00836 amt: ammonium transporter 88 489 9.6E-130 T 31-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 Gene3D G3DSA:1.10.3430.10 65 491 3.8E-135 T 31-10-2018 IPR029020 Ammonium/urea transporter BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 Pfam PF00909 Ammonium Transporter Family 90 489 1.7E-118 T 31-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 PRINTS PR00342 Rhesus blood group protein signature 189 205 1.7E-6 T 31-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 PRINTS PR00342 Rhesus blood group protein signature 285 303 1.7E-6 T 31-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 PRINTS PR00342 Rhesus blood group protein signature 316 338 1.7E-6 T 31-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BRM88_23840 7fb7dfe9ec18aa3f699810f2f6570500 491 PRINTS PR00342 Rhesus blood group protein signature 371 389 1.7E-6 T 31-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 Gene3D G3DSA:2.140.10.30 170 489 1.8E-70 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 SUPERFAMILY SSF53474 504 763 2.29E-51 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 174 473 1.2E-67 T 31-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 Gene3D G3DSA:3.40.50.1820 495 774 1.5E-48 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 Pfam PF00326 Prolyl oligopeptidase family 569 764 2.6E-49 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_16740 29d781e9e3761ae8f8cfa8c98a3048a1 779 SUPERFAMILY SSF82171 42 502 1.44E-35 T 31-10-2018 BRM88_01125 46b34c046f0d3cc9e786ee4e963257ec 139 Pfam PF12680 SnoaL-like domain 13 123 1.3E-16 T 31-10-2018 IPR037401 SnoaL-like domain BRM88_01125 46b34c046f0d3cc9e786ee4e963257ec 139 SUPERFAMILY SSF54427 5 133 3.32E-27 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_01125 46b34c046f0d3cc9e786ee4e963257ec 139 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 12 138 4.0E-43 T 31-10-2018 IPR011721 Conserved hypothetical protein CHP02096 BRM88_01125 46b34c046f0d3cc9e786ee4e963257ec 139 Gene3D G3DSA:3.10.450.50 1 139 5.8E-40 T 31-10-2018 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 SUPERFAMILY SSF55194 1 185 4.45E-68 T 31-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 Gene3D G3DSA:1.10.132.20 12 182 1.3E-66 T 31-10-2018 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 Pfam PF01765 Ribosome recycling factor 20 183 3.1E-62 T 31-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 2.7E-70 T 31-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 Gene3D G3DSA:3.30.1360.40 31 105 1.3E-66 T 31-10-2018 BRM88_10295 233f4c9a3d6ea89525208278a63224dd 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.906 T 31-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BRM88_09465 7e580806957b5e6ad75ac9f917937471 245 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 21 237 7.0E-85 T 31-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09465 7e580806957b5e6ad75ac9f917937471 245 Gene3D G3DSA:1.10.3810.10 64 237 1.0E-47 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09465 7e580806957b5e6ad75ac9f917937471 245 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 18 239 41.511 T 31-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09465 7e580806957b5e6ad75ac9f917937471 245 SUPERFAMILY SSF53955 67 237 2.31E-55 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_09465 7e580806957b5e6ad75ac9f917937471 245 Pfam PF00912 Transglycosylase 70 230 2.1E-45 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_03820 6bb986e3528834ff3fe0437a11346bdc 160 Gene3D G3DSA:3.30.450.40 10 160 8.6E-63 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_03820 6bb986e3528834ff3fe0437a11346bdc 160 SUPERFAMILY SSF55781 13 159 2.55E-42 T 31-10-2018 BRM88_03820 6bb986e3528834ff3fe0437a11346bdc 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 98 115 - T 31-10-2018 IPR000614 Free Met sulfoxide reductase conserved site BRM88_03820 6bb986e3528834ff3fe0437a11346bdc 160 SMART SM00065 31 160 0.0024 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_03820 6bb986e3528834ff3fe0437a11346bdc 160 Pfam PF13185 GAF domain 53 159 9.8E-12 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_13855 779626a0b56b335da1fbdb276ba5f265 176 Pfam PF12883 Protein of unknown function (DUF3828) 31 155 1.3E-8 T 31-10-2018 IPR024289 Domain of unknown function DUF3828 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00065 30 174 1.4E-5 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55785 293 431 1.05E-20 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.450.40 26 173 3.8E-19 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_21430 67029ba17256d1c775911a60d057089f 874 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 307 439 8.3E-14 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 445 567 7.4E-26 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 568 689 1.1E-8 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF08447 PAS fold 470 552 3.2E-12 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.70.270 696 858 2.5E-45 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55781 33 175 4.28E-27 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55785 451 561 4.67E-23 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.450.20 571 695 1.5E-15 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF01590 GAF domain 35 162 3.9E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00267 685 857 4.6E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55785 557 683 2.09E-19 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.450.20 446 570 1.1E-24 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 694 853 1.1E-34 T 31-10-2018 IPR000160 GGDEF domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00086 518 560 1.4E-7 T 31-10-2018 IPR001610 PAC motif BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00086 254 296 14.0 T 31-10-2018 IPR001610 PAC motif BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00086 391 433 0.0032 T 31-10-2018 IPR001610 PAC motif BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55073 701 852 3.14E-39 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF00990 Diguanylate cyclase, GGDEF domain 696 852 5.0E-37 T 31-10-2018 IPR000160 GGDEF domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.450.20 174 299 1.0E-10 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF08448 PAS fold 579 685 3.3E-13 T 31-10-2018 IPR013656 PAS fold-4 BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF08448 PAS fold 316 433 6.5E-9 T 31-10-2018 IPR013656 PAS fold-4 BRM88_21430 67029ba17256d1c775911a60d057089f 874 Pfam PF08448 PAS fold 182 297 3.3E-7 T 31-10-2018 IPR013656 PAS fold-4 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00091 572 638 0.0052 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00091 308 375 2.7E-7 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00091 445 511 3.1E-13 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 SMART SM00091 176 246 11.0 T 31-10-2018 IPR000014 PAS domain BRM88_21430 67029ba17256d1c775911a60d057089f 874 Gene3D G3DSA:3.30.450.20 304 445 1.2E-23 T 31-10-2018 BRM88_21430 67029ba17256d1c775911a60d057089f 874 SUPERFAMILY SSF55785 164 294 3.14E-13 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:1.20.1640.10 8 512 5.2E-249 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82866 297 497 9.29E-50 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:1.20.1640.10 513 566 5.2E-249 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82693 38 128 8.55E-25 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82693 139 331 1.01E-21 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.2090.10 718 806 5.2E-249 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82693 669 851 8.89E-27 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.2090.10 180 276 5.2E-249 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.70.1320 132 333 5.2E-249 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82714 184 273 3.53E-20 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82693 565 668 5.75E-26 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Pfam PF00873 AcrB/AcrD/AcrF family 1 851 4.1E-265 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.70.1430 38 814 5.2E-249 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 851 0.0 T 31-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.6E-98 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 SUPERFAMILY SSF82714 719 804 1.14E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.70.1430 567 665 5.2E-249 T 31-10-2018 BRM88_16125 922f9c0e0ef027786b13c36838f0c5ba 862 Gene3D G3DSA:3.30.70.1440 666 853 5.2E-249 T 31-10-2018 BRM88_18840 79e109595ce883c068335911e75998d2 398 SUPERFAMILY SSF55874 276 383 4.19E-13 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_18840 79e109595ce883c068335911e75998d2 398 Pfam PF07730 Histidine kinase 199 261 4.0E-15 T 31-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BRM88_18840 79e109595ce883c068335911e75998d2 398 Gene3D G3DSA:3.30.565.10 264 384 1.8E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 Gene3D G3DSA:3.40.50.12240 17 442 1.4E-150 T 31-10-2018 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 439 6.4E-171 T 31-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 23 439 1.4E-192 T 31-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 3.8E-71 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 SUPERFAMILY SSF52540 97 365 1.54E-95 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 93 3.6E-8 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_00460 0cf24cbc58c86cb445f77a402cc3b7fb 442 SMART SM00382 162 344 4.0E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 476 2.0E-156 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 SUPERFAMILY SSF52935 327 476 1.7E-34 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 Pfam PF00224 Pyruvate kinase, barrel domain 6 342 7.3E-122 T 31-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 Gene3D G3DSA:2.40.33.10 74 172 2.4E-157 T 31-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 272 296 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 63 79 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 247 271 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 190 204 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 297 315 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 220 246 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 PRINTS PR01050 Pyruvate kinase family signature 316 332 4.8E-56 T 31-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 SUPERFAMILY SSF50800 74 171 4.54E-24 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 Gene3D G3DSA:3.20.20.60 6 338 2.4E-157 T 31-10-2018 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 Gene3D G3DSA:3.40.1380.20 339 472 2.4E-157 T 31-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 Pfam PF02887 Pyruvate kinase, alpha/beta domain 360 473 4.2E-24 T 31-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 SUPERFAMILY SSF51621 4 342 8.72E-88 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_18150 1759f6666915a507b357f6b5fa1e1ed2 488 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 31-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 PRINTS PR00114 Serine/threonine phosphatase family signature 32 59 5.6E-5 T 31-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 PRINTS PR00114 Serine/threonine phosphatase family signature 2 29 5.6E-5 T 31-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 PRINTS PR00114 Serine/threonine phosphatase family signature 176 192 5.6E-5 T 31-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 Pfam PF00149 Calcineurin-like phosphoesterase 1 88 1.3E-12 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 SUPERFAMILY SSF56300 1 269 4.05E-47 T 31-10-2018 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 PIRSF PIRSF000903 1 274 5.5E-118 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 44.743 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 Gene3D G3DSA:3.60.21.10 1 272 1.1E-63 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like BRM88_20015 ce4820ae261ca86664207c039fad7b02 318 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 259 9.3E-77 T 31-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 284 452 3.9E-23 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 SUPERFAMILY SSF56645 39 280 3.01E-52 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 1.2E-9 T 31-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 41 158 3.0E-6 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Gene3D G3DSA:1.10.540.10 36 160 1.6E-11 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Gene3D G3DSA:2.40.110.10 162 288 2.9E-25 T 31-10-2018 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 272 1.1E-14 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Gene3D G3DSA:1.20.140.10 289 456 2.5E-47 T 31-10-2018 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 SUPERFAMILY SSF47203 288 460 1.77E-46 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_10500 e9e077fc5c4882855cfefc843c532658 597 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 589 2.3E-28 T 31-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 Gene3D G3DSA:3.50.30.80 421 570 4.4E-49 T 31-10-2018 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 3 603 55.386 T 31-10-2018 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 SUPERFAMILY SSF52016 421 601 1.57E-51 T 31-10-2018 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 602 6.1E-269 T 31-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 156 166 - T 31-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 SUPERFAMILY SSF143975 3 420 3.92E-136 T 31-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_12250 b9d34b9e03396055885bf8543e4099c5 638 Pfam PF00920 Dehydratase family 68 599 1.1E-149 T 31-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BRM88_20275 6b11f9112abbf46232ced29a606cb4d3 228 SUPERFAMILY SSF52540 5 190 4.91E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20275 6b11f9112abbf46232ced29a606cb4d3 228 Gene3D G3DSA:3.40.50.300 1 206 1.2E-62 T 31-10-2018 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 89 4.0E-25 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.039 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 1.5E-28 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 Gene3D G3DSA:1.20.58.110 1 87 4.4E-27 T 31-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 SUPERFAMILY SSF46992 3 86 2.35E-29 T 31-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08400 5c9d0a76c601516a1d76e161ba792704 89 Pfam PF01649 Ribosomal protein S20 2 84 1.0E-25 T 31-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_22765 4a33db63e6c9fba30788b200da3e7dd4 321 Pfam PF12762 ISXO2-like transposase domain 137 282 6.1E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22765 4a33db63e6c9fba30788b200da3e7dd4 321 SMART SM01126 137 282 4.1E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22765 4a33db63e6c9fba30788b200da3e7dd4 321 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.1E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 Gene3D G3DSA:1.25.40.10 317 396 1.6E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 Gene3D G3DSA:1.25.40.10 107 222 7.4E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SUPERFAMILY SSF48452 319 382 1.39E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SMART SM00028 179 212 0.087 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SMART SM00028 354 386 120.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SMART SM00028 320 353 15.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SMART SM00028 106 139 150.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 Gene3D G3DSA:1.25.40.10 223 305 6.7E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 Pfam PF13181 Tetratricopeptide repeat 111 136 0.086 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 Pfam PF09295 ChAPs (Chs5p-Arf1p-binding proteins) 144 252 5.7E-5 T 31-10-2018 IPR015374 Chs5p-Arf1p binding BRM88_00040 39d92686b1b9d73cfee63986c3391d36 397 SUPERFAMILY SSF48452 107 274 3.79E-14 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 162 183 - T 31-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 206 302 5.7E-19 T 31-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Gene3D G3DSA:3.30.70.120 232 303 8.6E-10 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 12 304 31.616 T 31-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Pfam PF01634 ATP phosphoribosyltransferase 60 224 1.8E-44 T 31-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 SUPERFAMILY SSF53850 12 228 2.3E-61 T 31-10-2018 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Gene3D G3DSA:3.40.190.10 13 227 1.2E-65 T 31-10-2018 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Gene3D G3DSA:3.40.190.10 109 198 1.2E-65 T 31-10-2018 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 13 201 4.8E-54 T 31-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BRM88_11735 2b28f92914cfe1119ab3b4885b256f24 304 Pfam PF08029 HisG, C-terminal domain 230 301 2.6E-8 T 31-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 TIGRFAM TIGR00032 argG: argininosuccinate synthase 22 411 2.9E-81 T 31-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 SUPERFAMILY SSF69864 191 412 6.02E-56 T 31-10-2018 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 25 33 - T 31-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 Hamap MF_00005 Argininosuccinate synthase [argG]. 19 413 39.604 T 31-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 133 144 - T 31-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 SUPERFAMILY SSF52402 20 201 1.92E-34 T 31-10-2018 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 Pfam PF00764 Arginosuccinate synthase 23 408 6.1E-83 T 31-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 Gene3D G3DSA:3.90.1260.10 81 368 4.7E-105 T 31-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14090 364046343296ef6738cb039a3ccc5116 413 Gene3D G3DSA:3.40.50.620 22 190 4.7E-105 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Pfam PF01588 Putative tRNA binding domain 45 144 1.9E-24 T 31-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:3.30.930.10 487 690 1.5E-57 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SUPERFAMILY SSF46955 403 474 1.19E-16 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SMART SM00873 211 384 3.2E-84 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 2.2E-226 T 31-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SUPERFAMILY SSF56037 195 392 7.59E-68 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 1.3E-25 T 31-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Pfam PF03483 B3/4 domain 212 384 3.5E-63 T 31-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SMART SM00896 698 791 1.5E-37 T 31-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:3.30.56.10 402 475 2.0E-21 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:3.50.40.10 197 393 2.1E-70 T 31-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SMART SM00874 402 470 1.2E-24 T 31-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Pfam PF03484 tRNA synthetase B5 domain 407 470 1.1E-15 T 31-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 43.437 T 31-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SUPERFAMILY SSF54991 695 791 7.19E-27 T 31-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:2.40.50.140 39 153 2.6E-65 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SUPERFAMILY SSF55681 466 687 1.19E-49 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:3.30.56.10 4 180 2.6E-65 T 31-10-2018 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 Gene3D G3DSA:3.30.70.380 699 792 2.0E-26 T 31-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BRM88_17020 5cab6baa5be4ef79b109bcc1c5ac84a2 792 SUPERFAMILY SSF50249 39 189 1.44E-42 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_06680 7cba80c0f59c514957055b455e5a8a57 339 Pfam PF01636 Phosphotransferase enzyme family 30 247 1.0E-24 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase BRM88_06680 7cba80c0f59c514957055b455e5a8a57 339 Gene3D G3DSA:3.90.1200.10 98 337 5.6E-59 T 31-10-2018 BRM88_06680 7cba80c0f59c514957055b455e5a8a57 339 Gene3D G3DSA:3.30.200.20 7 97 1.2E-16 T 31-10-2018 BRM88_06680 7cba80c0f59c514957055b455e5a8a57 339 SUPERFAMILY SSF56112 4 307 1.02E-38 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Gene3D G3DSA:3.30.499.20 10 360 2.6E-127 T 31-10-2018 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Gene3D G3DSA:1.10.1440.20 562 619 4.8E-8 T 31-10-2018 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 SUPERFAMILY SSF52016 599 857 2.94E-67 T 31-10-2018 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Gene3D G3DSA:3.20.19.10 620 858 1.8E-83 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 SUPERFAMILY SSF53732 22 588 2.09E-181 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 859 0.0 T 31-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 360 374 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 402 413 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 191 204 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 464 477 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 205 220 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 138 151 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 267 280 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 162 170 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 PRINTS PR00415 Aconitase family signature 281 294 4.3E-28 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Pfam PF00330 Aconitase family (aconitate hydratase) 70 533 7.0E-145 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Pfam PF00694 Aconitase C-terminal domain 657 787 4.4E-29 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BRM88_04520 f9eff34f18ed6314becfe50f0b9b121d 863 Gene3D G3DSA:3.30.499.10 361 561 8.6E-75 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 404 435 420.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 373 403 6.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 340 369 0.0098 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 917 946 1.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 235 264 700.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 304 336 15.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 720 749 2500.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 753 782 0.0051 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 472 501 310.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 851 880 0.24 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 681 716 390.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 950 987 150.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 1035 1064 0.33 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 505 539 58.0 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 884 913 0.97 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SMART SM00248 439 468 0.0012 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SUPERFAMILY SSF48403 693 1088 1.25E-57 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Gene3D G3DSA:1.25.40.20 613 809 4.1E-31 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Gene3D G3DSA:1.25.40.20 215 409 6.8E-32 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Gene3D G3DSA:1.25.40.20 965 1091 1.3E-16 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Gene3D G3DSA:1.25.40.20 410 562 1.3E-30 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Gene3D G3DSA:1.25.40.20 817 964 4.9E-33 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Pfam PF00023 Ankyrin repeat 918 948 0.0037 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 SUPERFAMILY SSF48403 240 560 1.04E-46 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Pfam PF12796 Ankyrin repeats (3 copies) 693 783 3.0E-7 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Pfam PF12796 Ankyrin repeats (3 copies) 320 399 9.2E-11 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Pfam PF12796 Ankyrin repeats (3 copies) 412 470 9.0E-7 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain BRM88_02310 85475efe09fe5891b8e009d4182b221e 1106 Pfam PF12796 Ankyrin repeats (3 copies) 826 912 4.4E-9 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SUPERFAMILY SSF53098 338 522 6.33E-52 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 TIGRFAM TIGR00593 pola: DNA polymerase I 4 933 4.3E-268 T 31-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SUPERFAMILY SSF56672 527 933 2.0E-154 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 796 807 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 818 829 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 683 698 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 735 748 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 759 784 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 880 893 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 660 682 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 705 728 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 PRINTS PR00868 DNA-polymerase family A (pol I) signature 850 866 4.1E-79 T 31-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:1.20.1060.10 548 663 3.0E-40 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SMART SM00475 2 256 7.1E-109 T 31-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:3.30.420.10 333 546 8.5E-69 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SUPERFAMILY SSF88723 1 165 8.41E-51 T 31-10-2018 IPR029060 PIN-like domain superfamily BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:1.10.150.20 714 857 7.6E-107 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 3 165 1.3E-47 T 31-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:3.40.50.1010 4 272 1.8E-89 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SMART SM00482 691 897 1.5E-106 T 31-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SMART SM00474 335 522 5.6E-33 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:3.30.70.370 669 929 7.6E-107 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SMART SM00279 168 203 3.9E-14 T 31-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 SUPERFAMILY SSF47807 166 280 1.29E-31 T 31-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 260 1.5E-27 T 31-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Gene3D G3DSA:1.10.150.20 169 241 1.8E-89 T 31-10-2018 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 ProSitePatterns PS00447 DNA polymerase family A signature. 759 778 - T 31-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Pfam PF00476 DNA polymerase family A 556 930 1.2E-146 T 31-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_22610 ee379a999075414c49f3b77b2c40b1be 933 Pfam PF01612 3'-5' exonuclease 335 521 1.8E-37 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 712 730 3.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 683 701 3.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 638 656 3.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 745 759 3.4E-31 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SMART SM00382 220 365 6.9E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SMART SM00382 634 776 1.6E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SUPERFAMILY SSF52540 186 511 2.82E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Gene3D G3DSA:3.40.50.300 175 364 3.7E-63 T 31-10-2018 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SUPERFAMILY SSF52540 583 879 5.9E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16280 876448cf8f2638662e864f58f3413e60 901 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 316 328 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SMART SM01086 806 898 5.8E-13 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_16280 876448cf8f2638662e864f58f3413e60 901 SUPERFAMILY SSF81923 12 131 3.14E-16 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 668 686 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Gene3D G3DSA:1.10.1780.10 1 161 1.8E-41 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Pfam PF07724 AAA domain (Cdc48 subfamily) 633 799 3.8E-39 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Gene3D G3DSA:3.40.50.300 366 581 2.1E-41 T 31-10-2018 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 225 336 1.8E-8 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Gene3D G3DSA:1.10.8.60 806 900 5.4E-12 T 31-10-2018 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 806 882 1.5E-12 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_16280 876448cf8f2638662e864f58f3413e60 901 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 890 0.0 T 31-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 BRM88_16280 876448cf8f2638662e864f58f3413e60 901 Gene3D G3DSA:3.40.50.300 588 804 1.8E-65 T 31-10-2018 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 17 341 3.1E-136 T 31-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 Gene3D G3DSA:1.20.120.420 11 153 5.1E-40 T 31-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 SUPERFAMILY SSF100950 12 345 1.33E-113 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 42 341 1.1E-111 T 31-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 Pfam PF01008 Initiation factor 2 subunit family 57 341 1.6E-75 T 31-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 Gene3D G3DSA:3.40.50.10470 154 351 1.0E-64 T 31-10-2018 BRM88_12750 56ab267a3be50b9f2e3731d12494dddb 354 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 352 38.797 T 31-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 12 315 38.827 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 13 314 1.3E-82 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 SUPERFAMILY SSF53671 11 315 3.14E-87 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 157 9.2E-37 T 31-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 49 71 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 87 96 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 295 309 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 144 161 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 271 276 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00101 Aspartate carbamoyltransferase signature 230 239 2.1E-31 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 Gene3D G3DSA:3.40.50.1370 20 310 5.9E-85 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 166 312 4.9E-22 T 31-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 59 66 - T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 Gene3D G3DSA:3.40.50.1370 145 293 5.9E-85 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 59 78 5.7E-21 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 279 302 5.7E-21 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 145 156 5.7E-21 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_07330 1f4348a1da1668264b00adca15f9c74e 315 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 5.7E-21 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_07195 1ae5e4faf4893ddb1192fa8b9cc76f54 485 SUPERFAMILY SSF101960 41 482 4.18E-137 T 31-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BRM88_07195 1ae5e4faf4893ddb1192fa8b9cc76f54 485 Pfam PF01458 Uncharacterized protein family (UPF0051) 223 456 6.5E-66 T 31-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BRM88_07195 1ae5e4faf4893ddb1192fa8b9cc76f54 485 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 476 8.9E-193 T 31-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 BRM88_03145 5f87c9bc84ef3b95b140aa6da1d9db3e 240 SMART SM00382 29 211 1.6E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_03145 5f87c9bc84ef3b95b140aa6da1d9db3e 240 SUPERFAMILY SSF52540 3 213 3.72E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03145 5f87c9bc84ef3b95b140aa6da1d9db3e 240 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_03145 5f87c9bc84ef3b95b140aa6da1d9db3e 240 Gene3D G3DSA:3.40.50.300 1 220 5.6E-55 T 31-10-2018 BRM88_03145 5f87c9bc84ef3b95b140aa6da1d9db3e 240 Pfam PF00005 ABC transporter 20 163 2.7E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 7.3E-34 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 Gene3D G3DSA:1.10.1040.10 159 291 1.1E-29 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 Gene3D G3DSA:3.40.50.720 1 158 2.6E-44 T 31-10-2018 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 SUPERFAMILY SSF48179 165 283 5.99E-24 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 PIRSF PIRSF000103 1 292 1.1E-75 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 SUPERFAMILY SSF51735 1 160 5.91E-39 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_23095 7f02d36455cfbd81af3335f329b5451b 292 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 280 5.7E-15 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BRM88_14955 a20ee68d223b9b155007dbde69a1138f 129 Gene3D G3DSA:2.30.110.50 18 57 1.7E-23 T 31-10-2018 BRM88_14955 a20ee68d223b9b155007dbde69a1138f 129 Gene3D G3DSA:3.55.50.10 58 122 1.7E-23 T 31-10-2018 BRM88_14955 a20ee68d223b9b155007dbde69a1138f 129 Pfam PF05954 Phage late control gene D protein (GPD) 20 121 2.9E-24 T 31-10-2018 BRM88_14955 a20ee68d223b9b155007dbde69a1138f 129 SUPERFAMILY SSF69279 24 106 3.57E-20 T 31-10-2018 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 SUPERFAMILY SSF64005 8 233 1.7E-82 T 31-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 Gene3D G3DSA:3.40.1180.10 4 238 1.8E-89 T 31-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 10 237 6.6E-85 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 Pfam PF01255 Putative undecaprenyl diphosphate synthase 17 237 3.7E-75 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 183 200 - T 31-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 BRM88_10290 c2bb85467f80c598d3c6311dcde7f136 253 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 10 238 39.367 T 31-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SMART SM00448 1 115 0.23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SMART SM00448 121 235 8.3E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 252 409 1.4E-43 T 31-10-2018 IPR000160 GGDEF domain BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SUPERFAMILY SSF55073 257 412 1.88E-47 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 Gene3D G3DSA:3.40.50.2300 116 248 5.9E-27 T 31-10-2018 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 Gene3D G3DSA:3.30.70.270 249 413 1.7E-54 T 31-10-2018 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 Gene3D G3DSA:3.40.50.2300 1 115 4.4E-10 T 31-10-2018 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 Pfam PF00072 Response regulator receiver domain 124 232 2.0E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SUPERFAMILY SSF52172 122 253 1.35E-29 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SMART SM00267 241 413 3.1E-54 T 31-10-2018 IPR000160 GGDEF domain BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 248 412 8.7E-50 T 31-10-2018 IPR000160 GGDEF domain BRM88_14720 08d305302e2940f47c08ca4e9e58062f 414 SUPERFAMILY SSF52172 1 120 4.69E-11 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 187 228 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 SUPERFAMILY SSF46689 133 183 4.78E-9 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 SMART SM00342 150 232 2.7E-26 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 SUPERFAMILY SSF46689 187 233 3.18E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 201 216 2.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 216 232 2.0E-6 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 Pfam PF08448 PAS fold 17 125 1.4E-19 T 31-10-2018 IPR013656 PAS fold-4 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 Gene3D G3DSA:3.30.450.20 10 135 3.8E-13 T 31-10-2018 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 Gene3D G3DSA:1.10.10.60 136 236 8.1E-30 T 31-10-2018 BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 SUPERFAMILY SSF55785 13 122 2.79E-10 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_16795 1f45e87106e88ed72d20a65d99ad237c 238 Pfam PF12833 Helix-turn-helix domain 156 233 7.4E-24 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_19075 241e7995f8e11533448e8bd7eae4ffb6 61 SUPERFAMILY SSF46561 1 59 1.7E-18 T 31-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19075 241e7995f8e11533448e8bd7eae4ffb6 61 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 55 1.6E-20 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19075 241e7995f8e11533448e8bd7eae4ffb6 61 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 15.164 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19075 241e7995f8e11533448e8bd7eae4ffb6 61 Gene3D G3DSA:1.10.287.310 1 61 9.9E-24 T 31-10-2018 BRM88_19075 241e7995f8e11533448e8bd7eae4ffb6 61 Pfam PF00831 Ribosomal L29 protein 4 57 4.6E-21 T 31-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_22705 dadeebb89351f9329433165db0689934 315 Pfam PF06258 Mitochondrial fission ELM1 12 313 5.3E-81 T 31-10-2018 IPR009367 Mitochondrial fission protein ELM1-like BRM88_24470 87bb063a73c8ba671e0132b20b681873 453 SUPERFAMILY SSF103473 28 434 2.62E-52 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_24470 87bb063a73c8ba671e0132b20b681873 453 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_24470 87bb063a73c8ba671e0132b20b681873 453 Gene3D G3DSA:1.20.1250.20 28 452 7.4E-63 T 31-10-2018 BRM88_24470 87bb063a73c8ba671e0132b20b681873 453 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 326 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_24470 87bb063a73c8ba671e0132b20b681873 453 Pfam PF00083 Sugar (and other) transporter 33 438 2.5E-31 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 SUPERFAMILY SSF160246 18 161 3.66E-32 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Gene3D G3DSA:3.30.300.160 76 161 9.0E-34 T 31-10-2018 BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 57 165 3.6E-14 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 SMART SM00382 329 450 7.5E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Gene3D G3DSA:3.40.50.300 304 578 1.2E-103 T 31-10-2018 BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 396 410 - T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 96 576 1.1E-208 T 31-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Pfam PF00437 Type II/IV secretion system protein 204 468 1.8E-87 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Gene3D G3DSA:1.10.40.70 13 75 1.1E-30 T 31-10-2018 BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 SUPERFAMILY SSF52540 186 576 7.16E-94 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04250 16c560aee2fe8080f9e5f8ad7942ecd8 579 Gene3D G3DSA:3.30.450.90 169 301 4.3E-50 T 31-10-2018 BRM88_24350 a61294900e918d505629fa451e037c05 446 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 20 446 4.9E-129 T 31-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) BRM88_24350 a61294900e918d505629fa451e037c05 446 Gene3D G3DSA:2.40.160.60 29 446 4.3E-124 T 31-10-2018 BRM88_24350 a61294900e918d505629fa451e037c05 446 SUPERFAMILY SSF56935 29 446 4.21E-86 T 31-10-2018 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:3.90.740.10 207 258 7.3E-7 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:3.40.50.620 341 587 6.2E-69 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 663 3.1E-192 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 54 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:1.10.730.10 610 849 2.5E-66 T 31-10-2018 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:1.10.287.380 909 978 2.5E-18 T 31-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 SUPERFAMILY SSF50677 194 399 1.7E-50 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 916 980 1.3E-17 T 31-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 PRINTS PR00986 Valyl-tRNA synthetase signature 403 416 1.5E-26 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 PRINTS PR00986 Valyl-tRNA synthetase signature 538 556 1.5E-26 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 PRINTS PR00986 Valyl-tRNA synthetase signature 503 524 1.5E-26 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 PRINTS PR00986 Valyl-tRNA synthetase signature 36 47 1.5E-26 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 SUPERFAMILY SSF47323 674 930 2.06E-62 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:3.90.740.10 259 340 3.0E-12 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 SUPERFAMILY SSF52374 2 673 2.6E-128 T 31-10-2018 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 SUPERFAMILY SSF46589 916 980 1.15E-15 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Hamap MF_02004 Valine--tRNA ligase [valS]. 4 980 15.411 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Pfam PF08264 Anticodon-binding domain of tRNA 704 856 1.5E-40 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 Gene3D G3DSA:3.40.50.620 5 202 2.1E-59 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_04170 aabde2358b2ee6695d95b538d0eca644 980 TIGRFAM TIGR00422 valS: valine--tRNA ligase 6 962 0.0 T 31-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BRM88_12925 970fc588f9a2934e0f017054d72d3bbc 163 Pfam PF03473 MOSC domain 57 160 4.2E-6 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BRM88_12925 970fc588f9a2934e0f017054d72d3bbc 163 Gene3D G3DSA:2.40.33.20 16 163 6.2E-20 T 31-10-2018 BRM88_12925 970fc588f9a2934e0f017054d72d3bbc 163 SUPERFAMILY SSF50800 17 162 4.55E-37 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BRM88_02895 6bca9aa654ba61d4848cd1a8c45b604f 171 Pfam PF01548 Transposase 9 101 2.1E-19 T 31-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Gene3D G3DSA:3.10.20.310 199 275 2.0E-16 T 31-10-2018 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Gene3D G3DSA:2.40.160.50 276 593 2.0E-84 T 31-10-2018 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Pfam PF17243 POTRA domain TamA domain 1 28 108 7.1E-17 T 31-10-2018 IPR035243 TamA, POTRA domain 1 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Gene3D G3DSA:3.10.20.310 26 110 5.7E-8 T 31-10-2018 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Pfam PF07244 Surface antigen variable number repeat 119 190 2.6E-5 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Gene3D G3DSA:3.10.20.310 111 198 2.7E-18 T 31-10-2018 BRM88_22890 263dcb60c3e8ae956ba8d221b13b88fb 593 Pfam PF01103 Surface antigen 304 581 1.2E-32 T 31-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 BRM88_18350 42ccfacd85533e67b70f95210b8a3416 141 Pfam PF02661 Fic/DOC family 7 85 8.6E-12 T 31-10-2018 IPR003812 Fido domain BRM88_18350 42ccfacd85533e67b70f95210b8a3416 141 SUPERFAMILY SSF140931 52 105 3.92E-6 T 31-10-2018 IPR036597 Fido-like domain superfamily BRM88_18350 42ccfacd85533e67b70f95210b8a3416 141 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 12 112 4.5E-13 T 31-10-2018 IPR006440 Death on curing protein GO:0016301 BRM88_18350 42ccfacd85533e67b70f95210b8a3416 141 PIRSF PIRSF018297 1 133 7.0E-37 T 31-10-2018 IPR006440 Death on curing protein GO:0016301 BRM88_18350 42ccfacd85533e67b70f95210b8a3416 141 Gene3D G3DSA:1.20.120.1870 3 137 1.5E-35 T 31-10-2018 BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 SUPERFAMILY SSF55048 132 199 2.35E-16 T 31-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 6 292 1.6E-99 T 31-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 SUPERFAMILY SSF52151 6 312 3.92E-77 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 9 312 1.4E-43 T 31-10-2018 IPR020801 Polyketide synthase, acyl transferase domain BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 Gene3D G3DSA:3.40.366.10 1 174 5.0E-57 T 31-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 Gene3D G3DSA:3.40.366.10 175 314 2.3E-39 T 31-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 Pfam PF00698 Acyl transferase domain 8 259 2.0E-35 T 31-10-2018 IPR014043 Acyl transferase BRM88_04445 da3a72da4e71190e0919af3f4fcc5abe 314 PIRSF PIRSF000446 4 312 2.5E-102 T 31-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 575 604 4.2E-57 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 4.2E-57 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 546 573 4.2E-57 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 623 652 4.2E-57 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 SUPERFAMILY SSF58104 415 696 2.75E-72 T 31-10-2018 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 508 662 1.9E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 SMART SM00304 395 447 13.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 SMART SM00304 214 266 1.2E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 SMART SM00283 448 695 2.2E-93 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 Gene3D G3DSA:1.20.120.1530 205 352 8.1E-43 T 31-10-2018 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 SUPERFAMILY SSF158472 214 265 1.7E-9 T 31-10-2018 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 Gene3D G3DSA:1.10.287.950 395 697 2.5E-86 T 31-10-2018 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 Pfam PF00672 HAMP domain 214 262 1.0E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15175 6b2d7b730cb494842f273d26200c8c16 753 Pfam PF12729 Four helix bundle sensory module for signal transduction 8 181 8.8E-19 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BRM88_08395 828744b88322985718b5ee529e97f052 350 Gene3D G3DSA:3.40.50.300 159 341 1.5E-47 T 31-10-2018 BRM88_08395 828744b88322985718b5ee529e97f052 350 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 7.2E-35 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.2E-35 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 7.2E-35 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.2E-35 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 Hamap MF_01454 GTPase Obg [obg]. 2 337 47.329 T 31-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 Pfam PF01926 50S ribosome-binding GTPase 161 288 1.2E-23 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 Gene3D G3DSA:2.70.210.12 1 158 1.8E-60 T 31-10-2018 IPR036726 GTP1/OBG domain superfamily BRM88_08395 828744b88322985718b5ee529e97f052 350 SUPERFAMILY SSF82051 3 158 3.27E-57 T 31-10-2018 IPR036726 GTP1/OBG domain superfamily BRM88_08395 828744b88322985718b5ee529e97f052 350 Pfam PF01018 GTP1/OBG 4 157 1.5E-58 T 31-10-2018 IPR006169 GTP1/OBG domain BRM88_08395 828744b88322985718b5ee529e97f052 350 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 31-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 BRM88_08395 828744b88322985718b5ee529e97f052 350 PIRSF PIRSF002401 1 349 1.9E-132 T 31-10-2018 IPR035101 GTP-binding protein, Obg-type BRM88_08395 828744b88322985718b5ee529e97f052 350 SUPERFAMILY SSF52540 152 340 4.51E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08395 828744b88322985718b5ee529e97f052 350 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 335 4.7E-137 T 31-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BRM88_00435 84e7cb836e4ae845cf3761befd4f1e60 187 Gene3D G3DSA:1.10.530.10 61 175 3.2E-16 T 31-10-2018 BRM88_00435 84e7cb836e4ae845cf3761befd4f1e60 187 SUPERFAMILY SSF53955 56 182 1.62E-40 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_00435 84e7cb836e4ae845cf3761befd4f1e60 187 Pfam PF01464 Transglycosylase SLT domain 66 162 1.5E-17 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 576 693 4.4E-36 T 31-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Pfam PF09334 tRNA synthetases class I (M) 6 395 2.9E-148 T 31-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 SUPERFAMILY SSF47323 388 546 8.72E-40 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Gene3D G3DSA:3.40.50.620 6 378 3.5E-139 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Gene3D G3DSA:1.10.730.10 379 538 9.2E-32 T 31-10-2018 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 545 38.587 T 31-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 535 4.6E-159 T 31-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 8.7E-25 T 31-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Pfam PF01588 Putative tRNA binding domain 597 691 7.9E-20 T 31-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 SUPERFAMILY SSF57770 139 173 9.81E-12 T 31-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 SUPERFAMILY SSF50249 587 693 4.41E-27 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Gene3D G3DSA:2.20.28.20 139 173 3.5E-139 T 31-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 SUPERFAMILY SSF52374 4 385 8.57E-88 T 31-10-2018 BRM88_10070 b8f9ac3a775f66482d461c58b1407aba 694 Gene3D G3DSA:2.40.50.140 584 693 5.1E-28 T 31-10-2018 BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 Gene3D G3DSA:3.40.1280.10 74 244 1.3E-58 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 Gene3D G3DSA:2.40.240.20 1 69 3.5E-17 T 31-10-2018 BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 17 244 5.5E-60 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 PIRSF PIRSF015601 6 244 2.0E-58 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 Pfam PF04452 RNA methyltransferase 19 238 6.1E-71 T 31-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 SUPERFAMILY SSF75217 74 244 4.45E-50 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_09350 b9f9f4a3512102d4bd19666ece6ad112 244 SUPERFAMILY SSF88697 5 69 9.61E-14 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_17710 a948d22048ea4a168f04058d2f6f472f 371 SUPERFAMILY SSF46565 188 249 9.42E-6 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 Gene3D G3DSA:3.40.50.200 184 521 3.0E-97 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 Pfam PF09286 Pro-kumamolisin, activation domain 20 149 1.7E-16 T 31-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 448 458 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 SMART SM00944 13 151 8.1E-34 T 31-10-2018 IPR015366 Peptidase S53, activation domain GO:0008236 Reactome: R-HSA-381038 BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 Pfam PF00082 Subtilase family 250 467 1.3E-8 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 SUPERFAMILY SSF54897 3 162 1.19E-39 T 31-10-2018 BRM88_16705 ae2a58ebbea32ddfd43fa38e11602aa1 523 SUPERFAMILY SSF52743 185 520 1.83E-64 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_22105 d9a7b55d2c549e7d88e47e98e62bedd0 198 Gene3D G3DSA:2.60.370.10 60 191 8.4E-45 T 31-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22105 d9a7b55d2c549e7d88e47e98e62bedd0 198 SUPERFAMILY SSF110111 64 179 9.29E-45 T 31-10-2018 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22105 d9a7b55d2c549e7d88e47e98e62bedd0 198 PIRSF PIRSF005413 2 194 6.5E-60 T 31-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22105 d9a7b55d2c549e7d88e47e98e62bedd0 198 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 31 177 4.1E-46 T 31-10-2018 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22550 6d2af24ac1bdfc7231f96ccd2bace9ad 181 SUPERFAMILY SSF51161 2 174 5.13E-45 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_22550 6d2af24ac1bdfc7231f96ccd2bace9ad 181 Gene3D G3DSA:2.160.10.10 3 177 1.8E-57 T 31-10-2018 BRM88_22550 6d2af24ac1bdfc7231f96ccd2bace9ad 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 2.0E-4 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_22550 6d2af24ac1bdfc7231f96ccd2bace9ad 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 46 1.3E-5 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_17945 c1e8a7ea230c6c20011d89bea0b94b86 252 SUPERFAMILY SSF53335 24 241 1.14E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_17945 c1e8a7ea230c6c20011d89bea0b94b86 252 Gene3D G3DSA:3.40.50.150 36 245 2.5E-60 T 31-10-2018 BRM88_17945 c1e8a7ea230c6c20011d89bea0b94b86 252 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 58 243 1.7E-45 T 31-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BRM88_17945 c1e8a7ea230c6c20011d89bea0b94b86 252 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 30 244 28.248 T 31-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BRM88_17945 c1e8a7ea230c6c20011d89bea0b94b86 252 Pfam PF02390 Putative methyltransferase 72 239 3.9E-48 T 31-10-2018 BRM88_14110 adb8ace4d2953d8cb4b10a1d965a274a 145 SUPERFAMILY SSF82649 15 143 2.14E-42 T 31-10-2018 BRM88_14110 adb8ace4d2953d8cb4b10a1d965a274a 145 Gene3D G3DSA:3.90.1010.10 1 144 6.7E-46 T 31-10-2018 BRM88_14110 adb8ace4d2953d8cb4b10a1d965a274a 145 Pfam PF02657 Fe-S metabolism associated domain 21 138 1.1E-42 T 31-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Gene3D G3DSA:2.40.30.10 821 919 1.0E-30 T 31-10-2018 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 337 920 3.5E-245 T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Pfam PF11987 Translation-initiation factor 2 706 810 4.3E-35 T 31-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 343 393 2.1E-14 T 31-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 SUPERFAMILY SSF46955 18 66 1.14E-8 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 ProSitePatterns PS01176 Initiation factor 2 signature. 871 893 - T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Gene3D G3DSA:3.40.50.300 417 590 5.0E-68 T 31-10-2018 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 SUPERFAMILY SSF52156 703 827 7.59E-34 T 31-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Pfam PF00009 Elongation factor Tu GTP binding domain 424 579 3.7E-33 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Gene3D G3DSA:2.40.30.10 591 708 9.5E-40 T 31-10-2018 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Gene3D G3DSA:3.30.56.50 17 66 3.4E-10 T 31-10-2018 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 SUPERFAMILY SSF50447 822 918 2.7E-31 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Gene3D G3DSA:3.40.50.10050 714 820 4.3E-35 T 31-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 12 918 16.757 T 31-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 SUPERFAMILY SSF50447 592 675 2.91E-24 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 84 119 1.2E-8 T 31-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 SUPERFAMILY SSF52540 417 586 3.03E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_17200 8df8649138c7ee205a3ec395c0630415 920 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 421 578 4.6E-31 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_02205 e09252fef2869c256ad5cf2669857748 363 Gene3D G3DSA:2.40.180.20 70 327 5.0E-101 T 31-10-2018 BRM88_02205 e09252fef2869c256ad5cf2669857748 363 Gene3D G3DSA:1.20.1280.120 50 341 5.0E-101 T 31-10-2018 BRM88_02205 e09252fef2869c256ad5cf2669857748 363 PIRSF PIRSF000296 15 348 5.9E-112 T 31-10-2018 IPR024168 Catalase, SrpA-type, predicted BRM88_02205 e09252fef2869c256ad5cf2669857748 363 SUPERFAMILY SSF56634 32 345 2.88E-89 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02205 e09252fef2869c256ad5cf2669857748 363 Pfam PF00199 Catalase 64 340 6.7E-24 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02205 e09252fef2869c256ad5cf2669857748 363 SMART SM01060 23 363 2.8E-6 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_23380 a8fec0da20583990f41c5614fb786782 604 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 81 174 1.2E-14 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal BRM88_23380 a8fec0da20583990f41c5614fb786782 604 Gene3D G3DSA:3.40.50.300 327 601 7.8E-104 T 31-10-2018 BRM88_23380 a8fec0da20583990f41c5614fb786782 604 SMART SM00382 352 473 4.6E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_23380 a8fec0da20583990f41c5614fb786782 604 Pfam PF00437 Type II/IV secretion system protein 230 491 2.7E-76 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_23380 a8fec0da20583990f41c5614fb786782 604 SUPERFAMILY SSF52540 213 599 1.48E-95 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23380 a8fec0da20583990f41c5614fb786782 604 Gene3D G3DSA:3.30.450.90 197 324 1.2E-42 T 31-10-2018 BRM88_23380 a8fec0da20583990f41c5614fb786782 604 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 419 433 - T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_23380 a8fec0da20583990f41c5614fb786782 604 SUPERFAMILY SSF160246 81 169 7.85E-13 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 SMART SM00387 554 669 2.0E-35 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 614 1.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 629 647 1.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 653 666 1.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 628 1.4E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 SUPERFAMILY SSF55874 504 667 3.41E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 SUPERFAMILY SSF47384 437 512 1.22E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 SUPERFAMILY SSF52172 686 805 2.49E-6 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 Gene3D G3DSA:3.30.565.10 514 672 6.1E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 668 3.3E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_16190 d17bc95f9616678d75183b86d6394b31 819 Gene3D G3DSA:1.10.287.130 439 511 4.6E-13 T 31-10-2018 BRM88_23435 66447444b157a826c7aea84c50615af9 321 Pfam PF00762 Ferrochelatase 10 320 3.4E-100 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BRM88_23435 66447444b157a826c7aea84c50615af9 321 ProSitePatterns PS00534 Ferrochelatase signature. 192 210 - T 31-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BRM88_23435 66447444b157a826c7aea84c50615af9 321 Gene3D G3DSA:3.40.50.1400 166 303 3.9E-87 T 31-10-2018 BRM88_23435 66447444b157a826c7aea84c50615af9 321 Hamap MF_00323 Ferrochelatase [hemH]. 8 321 33.746 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BRM88_23435 66447444b157a826c7aea84c50615af9 321 SUPERFAMILY SSF53800 8 320 1.7E-93 T 31-10-2018 BRM88_23435 66447444b157a826c7aea84c50615af9 321 Gene3D G3DSA:3.40.50.1400 10 319 3.9E-87 T 31-10-2018 BRM88_23435 66447444b157a826c7aea84c50615af9 321 TIGRFAM TIGR00109 hemH: ferrochelatase 8 317 7.7E-87 T 31-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BRM88_18425 1eae433145a4e5d76259429b38d08e28 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_18425 1eae433145a4e5d76259429b38d08e28 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_14875 1eae433145a4e5d76259429b38d08e28 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_14875 1eae433145a4e5d76259429b38d08e28 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_17840 1eae433145a4e5d76259429b38d08e28 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_17840 1eae433145a4e5d76259429b38d08e28 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 Hamap MF_00422 Protein translocase subunit SecE [secE]. 77 132 12.222 T 31-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 PRINTS PR01650 Bacterial translocase SecE signature 55 76 4.5E-15 T 31-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 PRINTS PR01650 Bacterial translocase SecE signature 100 120 4.5E-15 T 31-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 PRINTS PR01650 Bacterial translocase SecE signature 76 96 4.5E-15 T 31-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 Gene3D G3DSA:1.20.5.1030 77 133 5.0E-18 T 31-10-2018 IPR038379 SecE superfamily BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 81 133 4.2E-19 T 31-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 82 110 - T 31-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19195 9cd1fe5faad12d8b401d3cf83617ad3d 136 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 81 134 5.8E-21 T 31-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BRM88_05115 2e93b67a713bb26c53c9d796626dba89 321 SMART SM01126 137 282 2.4E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05115 2e93b67a713bb26c53c9d796626dba89 321 Pfam PF12762 ISXO2-like transposase domain 137 282 6.3E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05115 2e93b67a713bb26c53c9d796626dba89 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_12155 2e93b67a713bb26c53c9d796626dba89 321 SMART SM01126 137 282 2.4E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_12155 2e93b67a713bb26c53c9d796626dba89 321 Pfam PF12762 ISXO2-like transposase domain 137 282 6.3E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_12155 2e93b67a713bb26c53c9d796626dba89 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_02775 381dd5388d50b210dec138a2b624d075 281 Pfam PF11906 Protein of unknown function (DUF3426) 136 280 3.6E-37 T 31-10-2018 IPR021834 Protein of unknown function DUF3426 BRM88_19330 7ab09618e70d5273996cb01c6e89ad66 161 SUPERFAMILY SSF53774 1 156 1.7E-32 T 31-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BRM88_19330 7ab09618e70d5273996cb01c6e89ad66 161 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 8.9E-6 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BRM88_19330 7ab09618e70d5273996cb01c6e89ad66 161 PRINTS PR00139 Asparaginase/glutaminase family signature 75 93 8.9E-6 T 31-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BRM88_19330 7ab09618e70d5273996cb01c6e89ad66 161 Gene3D G3DSA:3.40.50.1170 2 161 3.9E-30 T 31-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BRM88_19330 7ab09618e70d5273996cb01c6e89ad66 161 Pfam PF00710 Asparaginase, N-terminal 4 155 8.2E-24 T 31-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 287 302 1.4E-19 T 31-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 90 106 1.4E-19 T 31-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 152 166 1.4E-19 T 31-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 335 351 1.4E-19 T 31-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 PRINTS PR01775 Bacterial glucose-fructose oxidoreductase signature 36 49 1.4E-19 T 31-10-2018 IPR008354 Glucose-fructose oxidoreductase, bacterial MetaCyc: PWY-5530 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 38 162 1.1E-23 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 SUPERFAMILY SSF51735 28 191 3.65E-44 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 Gene3D G3DSA:3.30.360.10 170 363 1.7E-82 T 31-10-2018 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 Gene3D G3DSA:3.40.50.720 43 345 1.7E-82 T 31-10-2018 BRM88_19880 535447ad56806d8b851d616bfc29c62e 369 SUPERFAMILY SSF55347 168 316 8.01E-20 T 31-10-2018 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 Pfam PF01311 Bacterial export proteins, family 1 20 253 3.5E-58 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 209 228 1.6E-21 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 187 209 1.6E-21 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 86 105 1.6E-21 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 27 48 1.6E-21 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_13755 400c3afc6ee97c04ea6bf278996fbd83 263 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 20 261 1.5E-58 T 31-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 5.0E-37 T 31-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.423 T 31-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 Gene3D G3DSA:2.40.50.140 1 72 3.5E-37 T 31-10-2018 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.4E-28 T 31-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 SMART SM00316 4 72 3.3E-5 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_13440 657812e0b762a9525edae75ee3d43004 72 SUPERFAMILY SSF50249 1 70 4.86E-28 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 Pfam PF04303 PrpF protein 6 392 9.5E-174 T 31-10-2018 IPR007400 PrpF protein BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 Gene3D G3DSA:3.10.310.10 11 389 4.6E-149 T 31-10-2018 BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 SUPERFAMILY SSF54506 190 393 5.23E-75 T 31-10-2018 BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 395 1.5E-235 T 31-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 Gene3D G3DSA:3.10.310.10 181 375 4.6E-149 T 31-10-2018 BRM88_04535 18b6245303d76ec9f83bf8af1f95a254 399 SUPERFAMILY SSF54506 2 182 7.22E-71 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF47226 1130 1271 6.93E-12 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.30.450.20 338 490 4.1E-23 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00388 643 708 4.2E-23 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF52172 890 1015 9.68E-25 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 797 811 8.3E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 832 850 8.3E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 856 869 8.3E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 PRINTS PR00344 Bacterial sensor protein C-terminal signature 815 825 8.3E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:1.10.287.130 622 706 2.8E-27 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF55785 342 461 3.14E-19 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00387 755 872 4.1E-39 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF52172 1031 1153 1.57E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.40.50.2300 886 1014 5.3E-25 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF55874 697 868 1.96E-45 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF01627 Hpt domain 1199 1281 8.7E-9 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 755 871 8.6E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.30.565.10 707 874 5.2E-49 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF03924 CHASE domain 87 265 3.7E-38 T 31-10-2018 IPR006189 CHASE domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00086 421 463 18.0 T 31-10-2018 IPR001610 PAC motif BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00086 581 623 1.9E-6 T 31-10-2018 IPR001610 PAC motif BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:1.20.120.160 1181 1288 4.4E-11 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM01079 83 271 1.6E-50 T 31-10-2018 IPR006189 CHASE domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF08448 PAS fold 357 465 2.1E-12 T 31-10-2018 IPR013656 PAS fold-4 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00091 350 416 1.5E-9 T 31-10-2018 IPR000014 PAS domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00091 493 560 1.2E-7 T 31-10-2018 IPR000014 PAS domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF55785 505 631 1.74E-18 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF00072 Response regulator receiver domain 1035 1148 2.3E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF00072 Response regulator receiver domain 893 1005 2.5E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00448 891 1007 3.5E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SMART SM00448 1032 1147 1.6E-34 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.30.450.350 87 282 2.1E-26 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 SUPERFAMILY SSF47384 629 709 3.14E-21 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.30.450.20 493 621 5.2E-26 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF00512 His Kinase A (phospho-acceptor) domain 643 708 1.3E-19 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Gene3D G3DSA:3.40.50.2300 1026 1155 1.6E-38 T 31-10-2018 BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 Pfam PF13426 PAS domain 505 622 3.3E-13 T 31-10-2018 IPR000014 PAS domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 496 630 1.1E-15 T 31-10-2018 IPR000014 PAS domain BRM88_14785 df7b820984ac9748d630541a08d5248c 1364 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 352 468 1.3E-16 T 31-10-2018 IPR000014 PAS domain BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00091 438 504 8.6E-12 T 31-10-2018 IPR000014 PAS domain BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00091 312 378 0.012 T 31-10-2018 IPR000014 PAS domain BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF00512 His Kinase A (phospho-acceptor) domain 747 809 1.5E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF00072 Response regulator receiver domain 1004 1116 1.1E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF08447 PAS fold 461 544 3.4E-20 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF55781 153 307 2.62E-23 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF55874 801 970 4.85E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF55781 595 726 1.74E-16 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF55785 299 423 5.41E-22 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00388 746 812 2.8E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF13185 GAF domain 605 718 2.3E-8 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF55785 423 550 2.26E-33 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.30.450.20 430 548 1.3E-34 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF01590 GAF domain 160 294 4.1E-12 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.30.450.20 312 423 1.1E-23 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00387 859 972 1.6E-39 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 434 557 4.6E-27 T 31-10-2018 IPR000014 PAS domain BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 310 433 2.1E-11 T 31-10-2018 IPR000014 PAS domain BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 859 971 3.0E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.30.450.40 137 311 2.3E-21 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.30.565.10 813 973 2.6E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00065 160 308 1.3E-14 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00065 574 727 0.0097 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF52172 1000 1120 3.27E-27 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.40.50.2300 992 1126 9.3E-27 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:3.30.450.40 577 729 3.0E-16 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 PRINTS PR00344 Bacterial sensor protein C-terminal signature 914 924 2.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 PRINTS PR00344 Bacterial sensor protein C-terminal signature 931 949 2.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 PRINTS PR00344 Bacterial sensor protein C-terminal signature 956 969 2.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 PRINTS PR00344 Bacterial sensor protein C-terminal signature 896 910 2.0E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00448 1001 1116 6.9E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SUPERFAMILY SSF47384 734 812 1.28E-15 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Pfam PF08448 PAS fold 320 427 6.9E-11 T 31-10-2018 IPR013656 PAS fold-4 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 Gene3D G3DSA:1.10.287.130 733 812 2.0E-19 T 31-10-2018 BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00086 510 552 1.1E-8 T 31-10-2018 IPR001610 PAC motif BRM88_12285 d0ce6da7994c8c190750ef54e150dbe7 1131 SMART SM00086 384 426 5.5E-8 T 31-10-2018 IPR001610 PAC motif BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 Hamap MF_00206 Lipoyl synthase [lipA]. 50 337 150.957 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 SUPERFAMILY SSF102114 66 329 1.83E-63 T 31-10-2018 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 49 86 1.5E-8 T 31-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 SMART SM00729 97 305 1.7E-18 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 TIGRFAM TIGR00510 lipA: lipoyl synthase 48 330 2.4E-132 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 Pfam PF04055 Radical SAM superfamily 103 267 1.2E-14 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 Gene3D G3DSA:3.20.20.70 92 306 3.3E-21 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_21080 675234cfe9a60d6a159ab317765e6ee4 337 PIRSF PIRSF005963 1 336 5.4E-138 T 31-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_20480 b92f7b6b574d0fea18d5d23d22cf9b3b 179 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 166 1.0E-24 T 31-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase BRM88_20365 0acaf58e8c80130bb18404489c9a36ff 313 Gene3D G3DSA:2.70.70.10 147 306 1.8E-45 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_20365 0acaf58e8c80130bb18404489c9a36ff 313 SUPERFAMILY SSF51261 82 301 3.3E-57 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_20365 0acaf58e8c80130bb18404489c9a36ff 313 Pfam PF01551 Peptidase family M23 203 297 6.0E-32 T 31-10-2018 IPR016047 Peptidase M23 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 245 30.58 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 8.5E-58 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 Gene3D G3DSA:3.30.70.660 107 242 1.5E-44 T 31-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 Pfam PF01416 tRNA pseudouridine synthase 144 241 3.3E-25 T 31-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 Pfam PF01416 tRNA pseudouridine synthase 8 104 6.1E-6 T 31-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 PIRSF PIRSF001430 1 255 2.9E-63 T 31-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 SUPERFAMILY SSF55120 1 252 5.61E-80 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17385 7342d5b326cdf9f2dd8716482365f8e4 257 Gene3D G3DSA:3.30.70.580 1 106 5.0E-32 T 31-10-2018 BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 Gene3D G3DSA:3.10.180.10 159 356 2.2E-66 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 Gene3D G3DSA:3.10.180.10 4 158 1.9E-41 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 6 147 7.6E-59 T 31-10-2018 BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 PIRSF PIRSF009283 1 356 1.6E-127 T 31-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 14 356 2.0E-114 T 31-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 164 274 8.5E-16 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_21715 2f89b0aef6af80ecbd9d7bc50c4a817c 356 SUPERFAMILY SSF54593 1 343 5.31E-73 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Gene3D G3DSA:2.40.50.140 55 148 2.9E-7 T 31-10-2018 BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Pfam PF00271 Helicase conserved C-terminal domain 535 612 1.3E-16 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Pfam PF00270 DEAD/DEAH box helicase 284 442 6.6E-16 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 SUPERFAMILY SSF50249 16 184 2.4E-31 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Pfam PF17191 RecG wedge domain 24 180 6.3E-11 T 31-10-2018 IPR033454 RecG, wedge domain BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 SUPERFAMILY SSF52540 463 678 2.0E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 SMART SM00490 529 613 8.2E-22 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 SMART SM00487 276 470 1.3E-29 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 37 686 3.0E-214 T 31-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Gene3D G3DSA:3.40.50.300 468 654 1.5E-52 T 31-10-2018 BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 Gene3D G3DSA:3.40.50.300 227 460 5.1E-78 T 31-10-2018 BRM88_05870 a732471978dc9c26f3c498c359eadedb 717 SUPERFAMILY SSF52540 192 464 8.15E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 SUPERFAMILY SSF50447 152 300 2.29E-32 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 6 604 6.9E-280 T 31-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Pfam PF00679 Elongation factor G C-terminus 401 480 6.0E-23 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Gene3D G3DSA:3.30.70.240 394 487 3.1E-123 T 31-10-2018 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 SUPERFAMILY SSF54980 403 516 8.63E-26 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 140 9.2E-25 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 SUPERFAMILY SSF52540 3 208 3.13E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Gene3D G3DSA:3.40.50.300 2 199 1.6E-65 T 31-10-2018 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 45 60 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 PRINTS PR00315 GTP-binding elongation factor signature 52 60 5.6E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 PRINTS PR00315 GTP-binding elongation factor signature 124 133 5.6E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 PRINTS PR00315 GTP-binding elongation factor signature 72 82 5.6E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 PRINTS PR00315 GTP-binding elongation factor signature 8 21 5.6E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 SMART SM00838 400 488 1.6E-4 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Gene3D G3DSA:3.30.70.870 307 595 3.1E-123 T 31-10-2018 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Gene3D G3DSA:2.40.50.250 488 604 3.1E-123 T 31-10-2018 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Gene3D G3DSA:2.40.30.10 200 300 2.3E-32 T 31-10-2018 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Pfam PF00009 Elongation factor Tu GTP binding domain 5 195 1.4E-54 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 SUPERFAMILY SSF54980 303 392 8.63E-15 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_04915 b841d1c4aa1e5c6c5b1f4d671a1d4e07 609 Pfam PF03144 Elongation factor Tu domain 2 220 290 3.4E-9 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BRM88_01525 7b4323258ff2a084956c1fa305b30d35 185 SUPERFAMILY SSF55729 29 165 8.1E-22 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_01525 7b4323258ff2a084956c1fa305b30d35 185 Pfam PF13508 Acetyltransferase (GNAT) domain 84 164 1.9E-11 T 31-10-2018 IPR000182 GNAT domain BRM88_01525 7b4323258ff2a084956c1fa305b30d35 185 Gene3D G3DSA:3.40.630.30 24 184 8.6E-22 T 31-10-2018 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 5 104 5.0E-20 T 31-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 Pfam PF13241 Putative NAD(P)-binding 7 108 7.8E-10 T 31-10-2018 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 Gene3D G3DSA:3.40.50.720 4 117 8.0E-17 T 31-10-2018 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 133 368 5.4E-89 T 31-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 Gene3D G3DSA:3.30.950.10 249 383 1.5E-45 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 Gene3D G3DSA:3.40.1010.10 132 248 2.3E-43 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 SUPERFAMILY SSF51735 4 104 1.21E-11 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 135 344 1.7E-48 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 SUPERFAMILY SSF53790 130 378 2.49E-76 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 213 246 - T 31-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 PIRSF PIRSF036426 124 384 4.9E-121 T 31-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_18125 46fab0fa68f89119a963a693b0a140e2 401 PIRSF PIRSF036426 2 129 1.6E-24 T 31-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 SUPERFAMILY SSF48179 167 298 4.97E-41 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 Gene3D G3DSA:1.10.1040.10 168 299 2.2E-52 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 299 1.3E-116 T 31-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 Gene3D G3DSA:3.40.50.720 1 167 2.9E-51 T 31-10-2018 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 169 280 4.6E-22 T 31-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 SMART SM01350 169 313 2.0E-6 T 31-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 112 137 2.8E-38 T 31-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 234 261 2.8E-38 T 31-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 2.8E-38 T 31-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 158 186 2.8E-38 T 31-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 2.8E-38 T 31-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BRM88_21020 4bcba154c159ed9582fb36f774032596 313 SUPERFAMILY SSF51735 1 155 3.94E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_21020 4bcba154c159ed9582fb36f774032596 313 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 153 8.2E-43 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BRM88_17820 58d40752de86ac83598c827051999baa 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17820 58d40752de86ac83598c827051999baa 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17820 58d40752de86ac83598c827051999baa 321 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.3E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_22865 d49fd64667bb63873c387d893553978d 574 SUPERFAMILY SSF52540 84 363 9.09E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_22865 d49fd64667bb63873c387d893553978d 574 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 164 172 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BRM88_22865 d49fd64667bb63873c387d893553978d 574 SMART SM00487 28 235 9.4E-57 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_22865 d49fd64667bb63873c387d893553978d 574 Gene3D G3DSA:3.40.50.300 227 389 8.5E-46 T 31-10-2018 BRM88_22865 d49fd64667bb63873c387d893553978d 574 Pfam PF12300 ATP-dependent RNA helicase RhlB 377 551 1.3E-66 T 31-10-2018 IPR022077 ATP-dependent RNA helicase RhlB GO:0016817 BRM88_22865 d49fd64667bb63873c387d893553978d 574 Pfam PF00271 Helicase conserved C-terminal domain 245 352 2.5E-28 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_22865 d49fd64667bb63873c387d893553978d 574 Pfam PF00270 DEAD/DEAH box helicase 33 206 4.0E-46 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_22865 d49fd64667bb63873c387d893553978d 574 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 390 50.942 T 31-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 BRM88_22865 d49fd64667bb63873c387d893553978d 574 Gene3D G3DSA:3.40.50.300 2 223 4.2E-74 T 31-10-2018 BRM88_22865 d49fd64667bb63873c387d893553978d 574 SMART SM00490 271 352 1.0E-31 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 Gene3D G3DSA:1.20.1250.20 19 236 1.0E-59 T 31-10-2018 BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 Pfam PF07690 Major Facilitator Superfamily 31 387 1.9E-21 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 25 421 2.3E-89 T 31-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 Gene3D G3DSA:1.20.1250.20 238 428 8.7E-59 T 31-10-2018 BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 SUPERFAMILY SSF103473 23 424 2.49E-39 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_10780 d9a4d0ec1a05a0409bd9b33927ba6d00 436 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 104 420 2.3E-92 T 31-10-2018 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0015757|GO:0016021|GO:1904659 BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 SUPERFAMILY SSF54523 7 137 9.94E-27 T 31-10-2018 BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 2.0E-10 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 27 9.8E-12 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 Gene3D G3DSA:3.30.700.10 7 141 6.2E-37 T 31-10-2018 BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 Pfam PF00114 Pilin (bacterial filament) 35 137 1.1E-14 T 31-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 BRM88_08185 77cc3bbd7dbe309b44f9f65dcb474ac9 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17975 fc95c798347b2396de31b19cd97628c1 237 SUPERFAMILY SSF56529 22 229 1.7E-62 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_17975 fc95c798347b2396de31b19cd97628c1 237 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 26 228 6.5E-52 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BRM88_17975 fc95c798347b2396de31b19cd97628c1 237 Gene3D G3DSA:3.90.850.10 5 235 2.4E-73 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_18430 31e71e0338649cbeb88936d99fa42873 103 SUPERFAMILY SSF116734 20 68 1.59E-12 T 31-10-2018 BRM88_18430 31e71e0338649cbeb88936d99fa42873 103 Gene3D G3DSA:1.10.287.1120 23 101 5.6E-10 T 31-10-2018 BRM88_18430 31e71e0338649cbeb88936d99fa42873 103 Pfam PF01420 Type I restriction modification DNA specificity domain 21 54 7.9E-5 T 31-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 PIRSF PIRSF029827 1 90 1.7E-40 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 Gene3D G3DSA:1.10.3880.10 1 90 2.0E-34 T 31-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.6E-39 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 77 3.0E-41 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.073 T 31-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BRM88_16820 2bff2fe70838b9b2cb4effba01b1c264 92 SUPERFAMILY SSF111148 1 88 9.94E-37 T 31-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 Pfam PF08245 Mur ligase middle domain 120 289 1.7E-22 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 Gene3D G3DSA:3.40.50.720 4 97 3.2E-8 T 31-10-2018 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 SUPERFAMILY SSF53623 118 307 1.96E-41 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 451 3.9E-84 T 31-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 118 141 - T 31-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 Gene3D G3DSA:3.90.190.20 312 452 3.5E-30 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 Gene3D G3DSA:3.40.1190.10 115 311 1.5E-43 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 9 455 27.156 T 31-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BRM88_07375 2853b69d774fea262a3bf6d65f6c58e2 468 SUPERFAMILY SSF53244 310 452 2.26E-25 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Hamap MF_00105 Transcription elongation factor GreA [greA]. 11 164 28.691 T 31-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 SUPERFAMILY SSF46557 13 86 1.2E-24 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 12 166 7.5E-62 T 31-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Gene3D G3DSA:3.10.50.30 87 168 6.0E-26 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Pfam PF03449 Transcription elongation factor, N-terminal 14 83 1.4E-25 T 31-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Hamap MF_00930 Transcription elongation factor GreB [greB]. 10 166 52.094 T 31-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 SUPERFAMILY SSF54534 89 165 2.88E-21 T 31-10-2018 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Gene3D G3DSA:1.10.287.180 10 85 2.4E-27 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 26 57 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 PIRSF PIRSF006092 8 167 1.3E-48 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 129 145 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BRM88_17475 279d4f9dff93c31ecd92618cd035403e 168 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 92 165 1.3E-24 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 377 504 3.8E-30 T 31-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Gene3D G3DSA:3.30.160.270 400 505 4.8E-10 T 31-10-2018 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 12 501 4.3E-194 T 31-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Gene3D G3DSA:3.20.20.70 8 283 7.1E-106 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 206 219 - T 31-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 9 513 40.055 T 31-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 SUPERFAMILY SSF110921 417 503 4.32E-21 T 31-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Pfam PF00682 HMGL-like 12 279 1.3E-90 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 SUPERFAMILY SSF51569 8 298 1.34E-94 T 31-10-2018 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 19 35 - T 31-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 SMART SM00917 376 504 7.1E-29 T 31-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BRM88_04760 55542d5c24f15178bd581dabb16ccfa2 520 Gene3D G3DSA:1.10.238.260 287 399 1.7E-36 T 31-10-2018 BRM88_11465 b6dbc7779bcd1e21ed0ff1b8cd5389ec 375 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 23 374 2.1E-111 T 31-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 BRM88_11465 b6dbc7779bcd1e21ed0ff1b8cd5389ec 375 Pfam PF03601 Conserved hypothetical protein 698 26 352 4.8E-104 T 31-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 SUPERFAMILY SSF69255 365 453 1.8E-27 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 SUPERFAMILY SSF69279 192 365 7.31E-32 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 Gene3D G3DSA:2.30.110.50 9 331 5.7E-103 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 6 524 1.2E-171 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 Gene3D G3DSA:3.30.1920.30 223 287 5.7E-103 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 Gene3D G3DSA:3.55.50.10 96 187 5.7E-103 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 Gene3D G3DSA:2.40.50.230 356 458 4.7E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 SUPERFAMILY SSF69279 11 183 1.02E-52 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 Pfam PF05954 Phage late control gene D protein (GPD) 23 328 5.6E-83 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 SUPERFAMILY SSF69349 443 641 3.84E-34 T 31-10-2018 BRM88_16260 c91d21759ec7176ed5668ef0a6216d52 645 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 18 506 2.4E-133 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_06630 6d792cb36d3822c241c924b79f6e9760 227 Pfam PF11306 Protein of unknown function (DUF3108) 12 216 1.7E-19 T 31-10-2018 IPR021457 Protein of unknown function DUF3108 BRM88_18310 e782d79c99f08df5289ca586ce0f2d77 272 SMART SM00471 101 238 0.0035 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_18310 e782d79c99f08df5289ca586ce0f2d77 272 Pfam PF08668 HDOD domain 13 202 1.0E-51 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD BRM88_18310 e782d79c99f08df5289ca586ce0f2d77 272 SUPERFAMILY SSF109604 3 259 1.46E-61 T 31-10-2018 BRM88_18310 e782d79c99f08df5289ca586ce0f2d77 272 Gene3D G3DSA:1.10.3210.10 2 254 3.1E-68 T 31-10-2018 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 670 683 6.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 631 645 6.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 664 6.5E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SUPERFAMILY SSF55785 337 460 3.14E-17 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SMART SM00091 352 417 6.2E-6 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SMART SM00091 222 288 220.0 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SMART SM00091 93 164 4.3E-6 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Pfam PF13426 PAS domain 362 462 5.1E-7 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Pfam PF13426 PAS domain 246 339 0.71 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SMART SM00387 594 686 7.5E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 94 198 1.6E-6 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 348 470 3.9E-15 T 31-10-2018 IPR000014 PAS domain BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Gene3D G3DSA:3.30.450.20 216 336 3.2E-8 T 31-10-2018 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Gene3D G3DSA:3.30.565.10 561 684 2.5E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Gene3D G3DSA:3.30.450.20 338 460 1.9E-16 T 31-10-2018 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Gene3D G3DSA:3.30.450.20 88 207 2.4E-11 T 31-10-2018 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SUPERFAMILY SSF55874 560 683 2.23E-21 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 597 684 1.1E-8 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SUPERFAMILY SSF55785 89 204 8.98E-14 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Pfam PF07730 Histidine kinase 491 556 2.7E-12 T 31-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 Pfam PF08448 PAS fold 106 207 7.6E-7 T 31-10-2018 IPR013656 PAS fold-4 BRM88_13490 aa1d9ee2411a2abee66327ff9ae0a81e 697 SUPERFAMILY SSF55785 209 338 2.79E-8 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 SMART SM00642 190 578 5.6E-6 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 15 701 0.0 T 31-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 Gene3D G3DSA:3.20.20.80 150 592 8.2E-179 T 31-10-2018 BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 SUPERFAMILY SSF81296 15 160 5.04E-48 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 20 106 1.2E-20 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 Gene3D G3DSA:2.60.40.10 3 149 7.8E-52 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 Gene3D G3DSA:2.60.40.1180 599 709 5.0E-17 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 SUPERFAMILY SSF51445 147 585 8.03E-131 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 Pfam PF00128 Alpha amylase, catalytic domain 200 307 1.2E-7 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00340 79190666a993cc2854862aa8f69b3b36 720 SUPERFAMILY SSF51011 598 701 1.15E-19 T 31-10-2018 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 Pfam PF00326 Prolyl oligopeptidase family 496 709 5.5E-67 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 26 436 2.4E-112 T 31-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 SUPERFAMILY SSF53474 446 706 4.56E-42 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 Gene3D G3DSA:2.130.10.120 96 437 2.8E-257 T 31-10-2018 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 638 660 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 478 496 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 504 528 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 532 551 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 562 582 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 620 635 3.5E-47 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 SUPERFAMILY SSF50993 21 440 4.71E-83 T 31-10-2018 BRM88_21310 c8c903f928b90a8a79339e257515fc5b 711 Gene3D G3DSA:3.40.50.1820 45 704 2.8E-257 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 332 45.613 T 31-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PIRSF PIRSF000904 1 336 2.9E-123 T 31-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 Gene3D G3DSA:3.30.540.10 2 194 6.2E-70 T 31-10-2018 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 Gene3D G3DSA:3.40.190.80 195 331 9.2E-55 T 31-10-2018 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 SUPERFAMILY SSF56655 4 330 3.81E-112 T 31-10-2018 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 192 4.3E-60 T 31-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PIRSF PIRSF500210 1 335 2.1E-124 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 204 231 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 178 201 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 147 170 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 306 331 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_00085 da42e803b76d963a255b3ae6e0e595d0 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 1.1E-67 T 31-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 7 262 2.1E-141 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 Pfam PF02675 S-adenosylmethionine decarboxylase 42 170 1.2E-30 T 31-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 PIRSF PIRSF001356 2 264 1.3E-145 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 154.168 T 31-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 Gene3D G3DSA:3.30.360.110 42 88 3.0E-5 T 31-10-2018 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 SUPERFAMILY SSF56276 47 175 1.33E-24 T 31-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 BRM88_22190 71d05c238f95d13f5810aea3ff6d8e13 264 Gene3D G3DSA:3.60.90.10 103 187 7.9E-7 T 31-10-2018 BRM88_21135 bed69acc5cbf82d60ccbb9bd5c646724 424 Pfam PF11860 N-acetylmuramidase 219 418 1.5E-46 T 31-10-2018 IPR024408 N-acetylmuramidase BRM88_21135 bed69acc5cbf82d60ccbb9bd5c646724 424 Gene3D G3DSA:3.10.350.10 4 63 1.3E-16 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_21135 bed69acc5cbf82d60ccbb9bd5c646724 424 SMART SM00257 6 50 1.1E-14 T 31-10-2018 IPR018392 LysM domain BRM88_21135 bed69acc5cbf82d60ccbb9bd5c646724 424 Pfam PF01476 LysM domain 7 50 1.3E-13 T 31-10-2018 IPR018392 LysM domain BRM88_21135 bed69acc5cbf82d60ccbb9bd5c646724 424 SUPERFAMILY SSF54106 6 50 1.31E-10 T 31-10-2018 BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 Gene3D G3DSA:1.20.1050.10 91 225 6.1E-51 T 31-10-2018 BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 Gene3D G3DSA:3.40.30.10 1 90 2.2E-30 T 31-10-2018 BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 Pfam PF00043 Glutathione S-transferase, C-terminal domain 135 197 3.5E-12 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 81 4.3E-15 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 SUPERFAMILY SSF52833 1 84 4.49E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_01910 42423ccfa13e8445823f084e84cfce96 229 SUPERFAMILY SSF47616 78 205 3.55E-35 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_11665 1cef8e0d562d77eb0c4bdfab20733d87 510 SUPERFAMILY SSF53720 20 498 3.14E-132 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_11665 1cef8e0d562d77eb0c4bdfab20733d87 510 Pfam PF00171 Aldehyde dehydrogenase family 28 491 2.4E-129 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_11665 1cef8e0d562d77eb0c4bdfab20733d87 510 Gene3D G3DSA:3.40.605.10 35 486 5.7E-145 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_11665 1cef8e0d562d77eb0c4bdfab20733d87 510 Gene3D G3DSA:3.40.309.10 267 461 5.7E-145 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_11665 1cef8e0d562d77eb0c4bdfab20733d87 510 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 263 270 - T 31-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BRM88_22075 13ed41dc07cc3423e87fc7e22c5853a2 298 Gene3D G3DSA:1.10.357.140 13 191 3.2E-18 T 31-10-2018 BRM88_22075 13ed41dc07cc3423e87fc7e22c5853a2 298 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 4 292 19.413 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BRM88_22075 13ed41dc07cc3423e87fc7e22c5853a2 298 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 6 291 1.3E-88 T 31-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BRM88_22075 13ed41dc07cc3423e87fc7e22c5853a2 298 Pfam PF01040 UbiA prenyltransferase family 21 266 3.2E-55 T 31-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BRM88_22075 13ed41dc07cc3423e87fc7e22c5853a2 298 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 62 84 - T 31-10-2018 IPR030470 UbiA prenyltransferase conserved site BRM88_23860 5f4ed484ec44f38ebbfda703f31ec865 268 Pfam PF03724 META domain 52 166 7.9E-15 T 31-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ BRM88_23860 5f4ed484ec44f38ebbfda703f31ec865 268 Gene3D G3DSA:2.40.128.270 50 171 2.1E-12 T 31-10-2018 IPR038670 HslJ-like superfamily BRM88_23860 5f4ed484ec44f38ebbfda703f31ec865 268 Pfam PF14302 Domain of unknown function (DUF4377) 188 265 5.6E-14 T 31-10-2018 IPR025485 Domain of unknown function DUF4377 BRM88_17755 767b70b81d903a83f3a75bc63c3990bf 149 Pfam PF14539 Domain of unknown function (DUF4442) 5 143 3.6E-21 T 31-10-2018 IPR027961 Protein of unknown function DUF4442 BRM88_17755 767b70b81d903a83f3a75bc63c3990bf 149 SUPERFAMILY SSF54637 10 148 3.39E-23 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_17755 767b70b81d903a83f3a75bc63c3990bf 149 Gene3D G3DSA:3.10.129.10 16 148 7.5E-31 T 31-10-2018 BRM88_19975 fb954185ce421ad0058283a32c90b98a 185 SUPERFAMILY SSF89028 7 179 3.53E-58 T 31-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BRM88_19975 fb954185ce421ad0058283a32c90b98a 185 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 179 1.3E-56 T 31-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BRM88_19975 fb954185ce421ad0058283a32c90b98a 185 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 28 178 1.0E-63 T 31-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BRM88_19975 fb954185ce421ad0058283a32c90b98a 185 Pfam PF01923 Cobalamin adenosyltransferase 8 166 7.3E-56 T 31-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BRM88_19975 fb954185ce421ad0058283a32c90b98a 185 Gene3D G3DSA:1.20.1200.10 17 184 4.6E-58 T 31-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BRM88_03870 4a1a87f85f6e16b6d51501a8d22cfbfd 127 Pfam PF14346 Domain of unknown function (DUF4398) 20 117 1.1E-16 T 31-10-2018 IPR025511 Domain of unknown function DUF4398 BRM88_03870 4a1a87f85f6e16b6d51501a8d22cfbfd 127 Gene3D G3DSA:1.20.1270.390 27 123 1.8E-7 T 31-10-2018 BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 Gene3D G3DSA:3.20.20.70 57 341 1.0E-79 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 Pfam PF13394 4Fe-4S single cluster domain 122 190 1.3E-4 T 31-10-2018 BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 SUPERFAMILY SSF102114 114 332 1.44E-18 T 31-10-2018 BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 21 335 5.2E-87 T 31-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 PIRSF PIRSF004911 7 342 2.1E-103 T 31-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BRM88_14250 87da50a487a3ec236492be0382f1cee5 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 22 341 7.9E-135 T 31-10-2018 IPR022462 Lysine-2,3-aminomutase-like BRM88_18435 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_18435 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_10925 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_10925 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_07255 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07255 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_08115 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_08115 6f76e68cc3e8cadeb2c510a561ab80ad 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 14 444 67.754 T 31-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 Gene3D G3DSA:3.40.1350.30 134 275 7.4E-101 T 31-10-2018 BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 Gene3D G3DSA:2.40.50.140 2 86 2.1E-25 T 31-10-2018 BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 SUPERFAMILY SSF50249 13 73 4.97E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 426 436 - T 31-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 374 404 - T 31-10-2018 IPR030390 RNA methyltransferase TrmA, active site BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 SUPERFAMILY SSF53335 75 443 5.91E-79 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 Gene3D G3DSA:3.40.50.150 88 438 7.4E-101 T 31-10-2018 BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 264 436 6.7E-56 T 31-10-2018 BRM88_09695 04d0506c66eba15cfb6abddde314488f 444 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 274 443 4.0E-23 T 31-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Gene3D G3DSA:3.30.2060.10 74 163 2.6E-216 T 31-10-2018 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 PIRSF PIRSF002799 3 795 8.0E-281 T 31-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 31 761 2.5E-286 T 31-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 SUPERFAMILY SSF56601 328 769 7.37E-98 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Pfam PF14814 Bifunctional transglycosylase second domain 76 160 3.7E-18 T 31-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Pfam PF00905 Penicillin binding protein transpeptidase domain 441 682 3.1E-16 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Pfam PF00912 Transglycosylase 167 346 2.3E-53 T 31-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Gene3D G3DSA:1.10.3810.10 164 370 2.6E-216 T 31-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 Gene3D G3DSA:3.40.710.10 66 723 2.6E-216 T 31-10-2018 BRM88_09080 013669b612aaa3f4ec1ab255e721afad 814 SUPERFAMILY SSF53955 167 368 2.81E-57 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF55874 876 1048 2.23E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF00072 Response regulator receiver domain 1071 1180 1.7E-20 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:2.130.10.10 410 655 9.9E-25 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF63829 78 300 4.58E-22 T 31-10-2018 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SMART SM00388 822 887 3.0E-21 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:3.30.565.10 886 1050 1.3E-44 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF63829 316 437 1.22E-8 T 31-10-2018 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:1.10.287.130 796 885 2.8E-22 T 31-10-2018 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF52172 1068 1191 2.99E-33 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 934 1046 3.1E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SMART SM00448 1069 1180 4.8E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 PRINTS PR00344 Bacterial sensor protein C-terminal signature 990 1000 9.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1032 1045 9.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1008 1026 9.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 PRINTS PR00344 Bacterial sensor protein C-terminal signature 972 986 9.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF07494 Two component regulator propeller 48 71 7.4E-5 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF07494 Two component regulator propeller 136 157 8.6E-4 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF00512 His Kinase A (phospho-acceptor) domain 822 887 1.4E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:2.130.10.10 41 133 6.1E-20 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:2.130.10.10 134 405 9.3E-34 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF47384 811 888 5.89E-17 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Pfam PF07495 Y_Y_Y domain 706 765 2.3E-13 T 31-10-2018 IPR011123 Two component regulator three Y BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SMART SM00387 934 1048 2.1E-35 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 SUPERFAMILY SSF63829 426 628 3.6E-17 T 31-10-2018 BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:2.60.40.10 674 776 1.3E-16 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09560 ba46b2aee07ef9f30064119b2aee0444 1193 Gene3D G3DSA:3.40.50.2300 1066 1192 6.1E-31 T 31-10-2018 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 118 8.7E-10 T 31-10-2018 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 307 1.5E-96 T 31-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 31-10-2018 IPR014762 DNA mismatch repair, conserved site BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 621 29.138 T 31-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Gene3D G3DSA:3.30.230.10 214 326 7.2E-38 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Gene3D G3DSA:3.30.565.10 1 203 2.2E-66 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 211 326 1.8E-38 T 31-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Pfam PF08676 MutL C terminal dimerisation domain 434 581 2.0E-49 T 31-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Gene3D G3DSA:3.30.1370.100 481 576 2.3E-59 T 31-10-2018 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 SMART SM00853 438 581 2.1E-56 T 31-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 SUPERFAMILY SSF54211 205 327 2.5E-35 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 SMART SM01340 209 327 1.5E-56 T 31-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 SUPERFAMILY SSF55874 2 201 1.44E-53 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 SUPERFAMILY SSF118116 434 623 7.19E-61 T 31-10-2018 IPR037198 MutL, C-terminal domain superfamily BRM88_14390 7bae5f87c47f232224a79197e087ed97 625 Gene3D G3DSA:2.30.42.20 440 618 2.3E-59 T 31-10-2018 BRM88_09185 f85c36aec92198c12bbaa08dc113863a 243 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 4 206 29.396 T 31-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 BRM88_09185 f85c36aec92198c12bbaa08dc113863a 243 Pfam PF03932 CutC family 6 204 2.0E-80 T 31-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 BRM88_09185 f85c36aec92198c12bbaa08dc113863a 243 SUPERFAMILY SSF110395 6 241 4.05E-67 T 31-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BRM88_09185 f85c36aec92198c12bbaa08dc113863a 243 Gene3D G3DSA:3.20.20.380 4 242 2.8E-79 T 31-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.30.2060.10 135 220 1.2E-110 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Pfam PF00270 DEAD/DEAH box helicase 610 769 7.8E-17 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Pfam PF02559 CarD-like/TRCF domain 485 578 8.9E-24 T 31-10-2018 IPR003711 CarD-like/TRCF domain BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF52540 528 789 1.83E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SMART SM01058 484 581 2.0E-47 T 31-10-2018 IPR003711 CarD-like/TRCF domain BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.40.50.300 547 786 7.4E-231 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.40.50.11180 28 339 1.2E-110 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 153 1087 0.0 T 31-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SMART SM00490 831 915 7.4E-19 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF52540 360 470 2.65E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:2.30.30.840 488 546 7.4E-231 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF143517 1006 1152 9.68E-43 T 31-10-2018 IPR037235 TRCF-like, C-terminal domain BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.40.50.11140 360 458 2.1E-16 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 27 1115 27.979 T 31-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF141259 476 553 2.88E-21 T 31-10-2018 IPR036101 CarD-like/TRCF domain superfamily BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.40.50.300 484 994 7.4E-231 T 31-10-2018 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Gene3D G3DSA:3.90.1150.50 1011 1153 7.3E-42 T 31-10-2018 IPR037235 TRCF-like, C-terminal domain BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Pfam PF03461 TRCF domain 1015 1107 1.5E-27 T 31-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF52540 787 994 3.67E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 Pfam PF00271 Helicase conserved C-terminal domain 815 914 4.7E-16 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SMART SM00982 1014 1114 3.6E-51 T 31-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SMART SM00487 605 795 9.9E-35 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_07655 2aaccd3aa8133106cc52d6650a2f23d4 1154 SUPERFAMILY SSF52540 24 346 9.92E-93 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13665 da7a56e39a6dbf6f66d34aaa86663c47 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 178 2.8E-6 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_13665 da7a56e39a6dbf6f66d34aaa86663c47 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 131 4.0E-5 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_13665 da7a56e39a6dbf6f66d34aaa86663c47 207 SUPERFAMILY SSF51161 43 192 8.46E-27 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_13665 da7a56e39a6dbf6f66d34aaa86663c47 207 Gene3D G3DSA:2.160.10.10 87 193 2.5E-20 T 31-10-2018 BRM88_11115 08d3c2be173cde1f5117a012d8aac285 439 SUPERFAMILY SSF53098 18 403 4.4E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_11115 08d3c2be173cde1f5117a012d8aac285 439 Pfam PF13546 DDE superfamily endonuclease 18 291 5.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 1 492 19.393 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 Pfam PF03023 MviN-like protein 27 496 1.9E-120 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PIRSF PIRSF002869 1 533 1.6E-138 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 5 515 7.4E-118 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 155 176 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 359 378 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 50 66 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 434 451 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 131 155 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 31 50 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_08405 756af2ac8d2f26964df8b71285ac868e 534 PRINTS PR01806 Virulence factor MviN signature 261 287 1.2E-69 T 31-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 SUPERFAMILY SSF51445 177 730 3.47E-240 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Pfam PF03648 Glycosyl hydrolase family 67 N-terminus 40 154 4.2E-25 T 31-10-2018 IPR005154 Alpha glucuronidase, N-terminal GO:0045493|GO:0046559 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Gene3D G3DSA:3.90.1330.10 505 730 5.1E-91 T 31-10-2018 IPR037054 Alpha-glucuronidase, C-terminal domain superfamily GO:0005576|GO:0045493|GO:0046559 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 SUPERFAMILY SSF55545 35 175 3.49E-37 T 31-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Gene3D G3DSA:3.20.20.80 177 501 2.2E-149 T 31-10-2018 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Gene3D G3DSA:3.30.379.10 48 172 8.4E-31 T 31-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Pfam PF07477 Glycosyl hydrolase family 67 C-terminus 484 707 2.3E-91 T 31-10-2018 IPR011099 Glycosyl hydrolase family 67, C-terminal GO:0005576|GO:0045493|GO:0046559 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 Pfam PF07488 Glycosyl hydrolase family 67 middle domain 159 482 4.8E-145 T 31-10-2018 IPR011100 Glycosyl hydrolase family 67, catalytic domain GO:0005576|GO:0045493|GO:0046559 BRM88_23490 6b8e28abf6f993386a714c4dd92b2ebe 731 PIRSF PIRSF029900 16 731 1.5E-303 T 31-10-2018 IPR011395 Alpha glucuronidase GO:0005576|GO:0045493|GO:0046559 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 Gene3D G3DSA:1.10.10.60 418 476 2.1E-22 T 31-10-2018 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 PRINTS PR00045 Sigma-54 factor signature 378 390 1.3E-26 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 PRINTS PR00045 Sigma-54 factor signature 452 470 1.3E-26 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 PRINTS PR00045 Sigma-54 factor signature 394 405 1.3E-26 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 PRINTS PR00045 Sigma-54 factor signature 188 205 1.3E-26 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 PIRSF PIRSF000774 1 479 1.2E-137 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 Pfam PF04963 Sigma-54 factor, core binding domain 113 306 3.6E-49 T 31-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 366 385 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 457 464 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 475 4.8E-150 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 Pfam PF04552 Sigma-54, DNA binding domain 320 477 1.2E-63 T 31-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 1.6E-17 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_06580 5f61f6bbefccac6cb02ea000bd5e753f 479 Gene3D G3DSA:1.10.10.1330 118 232 9.9E-21 T 31-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BRM88_06675 465893865ffc71b038dcafad6c5c19bf 236 SUPERFAMILY SSF53448 1 231 1.35E-50 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_06675 465893865ffc71b038dcafad6c5c19bf 236 Pfam PF00483 Nucleotidyl transferase 2 118 5.9E-14 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BRM88_06675 465893865ffc71b038dcafad6c5c19bf 236 Gene3D G3DSA:3.90.550.10 1 233 1.5E-51 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_06565 036d71ffc8f05316f417095fda178531 316 SUPERFAMILY SSF53795 137 306 5.19E-32 T 31-10-2018 BRM88_06565 036d71ffc8f05316f417095fda178531 316 Pfam PF02603 HPr Serine kinase N terminus 5 132 6.2E-23 T 31-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BRM88_06565 036d71ffc8f05316f417095fda178531 316 Gene3D G3DSA:3.40.50.300 135 316 2.5E-60 T 31-10-2018 BRM88_06565 036d71ffc8f05316f417095fda178531 316 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 4 314 35.878 T 31-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BRM88_06565 036d71ffc8f05316f417095fda178531 316 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 6 309 3.0E-100 T 31-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BRM88_06565 036d71ffc8f05316f417095fda178531 316 Pfam PF07475 HPr Serine kinase C-terminal domain 135 306 1.6E-56 T 31-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BRM88_06565 036d71ffc8f05316f417095fda178531 316 SUPERFAMILY SSF75138 10 136 4.84E-30 T 31-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BRM88_06565 036d71ffc8f05316f417095fda178531 316 Gene3D G3DSA:3.40.1390.20 11 134 7.6E-24 T 31-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BRM88_19710 5e3470b19917a647d80fce42739789a7 402 Gene3D G3DSA:3.90.1150.10 43 390 1.9E-128 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_19710 5e3470b19917a647d80fce42739789a7 402 Pfam PF00155 Aminotransferase class I and II 46 389 8.5E-64 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_19710 5e3470b19917a647d80fce42739789a7 402 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 8 400 1.7E-223 T 31-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 BRM88_19710 5e3470b19917a647d80fce42739789a7 402 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 5 398 53.029 T 31-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 BRM88_19710 5e3470b19917a647d80fce42739789a7 402 SUPERFAMILY SSF53383 11 398 7.24E-115 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_19710 5e3470b19917a647d80fce42739789a7 402 Gene3D G3DSA:3.40.640.10 61 299 1.9E-128 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_18640 b38f8c4c1ca95d726ce9f77406901617 444 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 16 442 1.9E-140 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 BRM88_18640 b38f8c4c1ca95d726ce9f77406901617 444 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 2 443 7.7E-144 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 BRM88_20590 47258a5dccbacf983f2b15a1f3656009 784 Gene3D G3DSA:2.40.170.20 210 782 1.0E-50 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_20590 47258a5dccbacf983f2b15a1f3656009 784 Pfam PF07715 TonB-dependent Receptor Plug Domain 87 184 2.9E-10 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_20590 47258a5dccbacf983f2b15a1f3656009 784 Pfam PF00593 TonB dependent receptor 287 777 3.8E-22 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_20590 47258a5dccbacf983f2b15a1f3656009 784 Gene3D G3DSA:2.170.130.10 58 202 3.4E-8 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_20590 47258a5dccbacf983f2b15a1f3656009 784 SUPERFAMILY SSF56935 61 782 3.04E-71 T 31-10-2018 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 PRINTS PR00406 Cytochrome B5 reductase signature 96 103 1.0E-7 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 PRINTS PR00406 Cytochrome B5 reductase signature 75 86 1.0E-7 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 PRINTS PR00406 Cytochrome B5 reductase signature 153 172 1.0E-7 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 PRINTS PR00406 Cytochrome B5 reductase signature 240 248 1.0E-7 T 31-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Gene3D G3DSA:3.40.50.80 144 272 4.8E-23 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 288 341 1.3E-5 T 31-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Gene3D G3DSA:3.10.20.30 273 364 3.5E-16 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 SUPERFAMILY SSF54292 263 363 4.72E-19 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 SUPERFAMILY SSF63380 40 145 1.48E-17 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Pfam PF00970 Oxidoreductase FAD-binding domain 52 142 8.7E-10 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Gene3D G3DSA:2.40.30.10 44 143 9.8E-14 T 31-10-2018 BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 SUPERFAMILY SSF52343 144 260 1.11E-26 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_23620 4b2a860fb36ad70c2e97b2414d285c36 364 Pfam PF00175 Oxidoreductase NAD-binding domain 154 254 4.0E-12 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Gene3D G3DSA:3.30.70.270 20 172 3.0E-26 T 31-10-2018 BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Gene3D G3DSA:3.20.20.450 181 431 1.3E-88 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Gene3D G3DSA:3.40.50.2300 437 573 1.8E-28 T 31-10-2018 BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SUPERFAMILY SSF55073 27 169 1.26E-23 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SMART SM00448 446 558 6.5E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SUPERFAMILY SSF52172 445 569 2.28E-28 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 29 167 3.5E-15 T 31-10-2018 IPR000160 GGDEF domain BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Pfam PF00072 Response regulator receiver domain 449 559 1.1E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Pfam PF00990 Diguanylate cyclase, GGDEF domain 27 163 6.1E-19 T 31-10-2018 IPR000160 GGDEF domain BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SMART SM00267 11 168 2.9E-7 T 31-10-2018 IPR000160 GGDEF domain BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SUPERFAMILY SSF141868 185 432 5.75E-81 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 Pfam PF00563 EAL domain 184 419 9.7E-71 T 31-10-2018 IPR001633 EAL domain BRM88_13495 29a31c10ffdb39bcf45794c39c65e4b4 573 SMART SM00052 178 424 2.5E-97 T 31-10-2018 IPR001633 EAL domain BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 PIRSF PIRSF037618 1 711 1.7E-283 T 31-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 SUPERFAMILY SSF53335 143 375 1.4E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Pfam PF01170 Putative RNA methylase family UPF0020 161 372 1.5E-38 T 31-10-2018 IPR000241 Putative RNA methylase domain BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 308 314 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Gene3D G3DSA:3.40.50.150 496 711 4.1E-66 T 31-10-2018 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Gene3D G3DSA:3.30.2130.30 4 259 1.7E-133 T 31-10-2018 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Gene3D G3DSA:3.30.750.80 397 495 2.8E-31 T 31-10-2018 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Pfam PF02926 THUMP domain 30 152 3.8E-9 T 31-10-2018 IPR004114 THUMP domain GO:0003723 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 3 711 29.707 T 31-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 SUPERFAMILY SSF53335 401 705 4.84E-58 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 485 663 1.0E-14 T 31-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 Gene3D G3DSA:3.40.50.150 168 371 1.7E-133 T 31-10-2018 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 SMART SM00981 55 153 3.8E-20 T 31-10-2018 IPR004114 THUMP domain GO:0003723 BRM88_12900 0dd9b0ac21b34500ab69eb5d34ccbbf4 711 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 198 209 - T 31-10-2018 IPR000241 Putative RNA methylase domain BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 Gene3D G3DSA:3.40.1160.10 2 238 1.5E-79 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 Pfam PF00696 Amino acid kinase family 8 215 4.5E-29 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 PIRSF PIRSF005650 1 240 2.3E-94 T 31-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 9.1E-99 T 31-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 SUPERFAMILY SSF53633 5 236 1.7E-72 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_10300 336544785e18215d20bac23f6a6d3dc8 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 45.245 T 31-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 300 307 2.2E-5 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 164 189 2.2E-5 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 2.2E-5 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 SUPERFAMILY SSF51905 10 217 3.18E-33 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 164 182 7.3E-8 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 7.3E-8 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 7.3E-8 T 31-10-2018 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 SUPERFAMILY SSF51905 161 340 3.78E-23 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 327 3.9E-54 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_22830 846eae18579581459e4e6b322d81fd9f 430 Gene3D G3DSA:3.50.50.100 9 407 2.4E-118 T 31-10-2018 BRM88_03980 4b99210df93033b6693fb33e60705332 185 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 175 1.5E-79 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BRM88_03980 4b99210df93033b6693fb33e60705332 185 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 174 2.2E-72 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BRM88_03980 4b99210df93033b6693fb33e60705332 185 Gene3D G3DSA:2.60.120.10 1 185 2.7E-72 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_03980 4b99210df93033b6693fb33e60705332 185 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 177 4.0E-99 T 31-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BRM88_03980 4b99210df93033b6693fb33e60705332 185 SUPERFAMILY SSF51182 2 176 8.26E-74 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 Gene3D G3DSA:3.30.160.70 3 74 2.0E-15 T 31-10-2018 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 158 8.7E-34 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 80 159 2.5E-31 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 Gene3D G3DSA:1.10.10.10 77 159 1.3E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 75 3.8E-4 T 31-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 SUPERFAMILY SSF53155 4 82 3.92E-17 T 31-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 8 159 40.713 T 31-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 129 135 - T 31-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BRM88_07955 ea51dd298a234db28b8c171aff18da68 181 SUPERFAMILY SSF46767 78 160 2.09E-31 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BRM88_08650 895ac0c0a50a8d4067afaa031d24b850 236 SUPERFAMILY SSF55174 5 56 3.79E-10 T 31-10-2018 BRM88_08650 895ac0c0a50a8d4067afaa031d24b850 236 Pfam PF01479 S4 domain 6 41 1.5E-6 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_08650 895ac0c0a50a8d4067afaa031d24b850 236 Gene3D G3DSA:3.10.290.10 3 63 2.5E-11 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_08650 895ac0c0a50a8d4067afaa031d24b850 236 SUPERFAMILY SSF55120 65 234 9.18E-20 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08650 895ac0c0a50a8d4067afaa031d24b850 236 Gene3D G3DSA:3.30.2350.10 64 235 3.4E-25 T 31-10-2018 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 Pfam PF00591 Glycosyl transferase family, a/b domain 77 327 1.5E-91 T 31-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 Gene3D G3DSA:3.40.1030.10 73 344 2.9E-107 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 SUPERFAMILY SSF52418 77 340 1.02E-92 T 31-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 SUPERFAMILY SSF47648 4 72 8.5E-18 T 31-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 9 336 4.8E-123 T 31-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 337 36.761 T 31-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 Gene3D G3DSA:1.20.970.10 1 72 3.0E-34 T 31-10-2018 BRM88_22210 c922f7b2182407e7c7b558542d451a9a 345 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 68 9.6E-13 T 31-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BRM88_02305 ad097134dedc6262a9a63fb262a6ece0 86 Pfam PF05166 YcgL domain 4 75 1.0E-24 T 31-10-2018 IPR027354 YcgL domain BRM88_02305 ad097134dedc6262a9a63fb262a6ece0 86 SUPERFAMILY SSF160191 1 77 2.48E-23 T 31-10-2018 IPR038068 YcgL-like superfamily BRM88_02305 ad097134dedc6262a9a63fb262a6ece0 86 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 5 75 9.0E-35 T 31-10-2018 IPR027354 YcgL domain BRM88_02305 ad097134dedc6262a9a63fb262a6ece0 86 Gene3D G3DSA:3.10.510.20 1 74 8.6E-24 T 31-10-2018 IPR038068 YcgL-like superfamily BRM88_02305 ad097134dedc6262a9a63fb262a6ece0 86 Hamap MF_01866 Protein YcgL [ycgL]. 1 86 20.161 T 31-10-2018 IPR027354 YcgL domain BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.6E-62 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 Pfam PF00873 AcrB/AcrD/AcrF family 5 1014 2.9E-287 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.70.1430 559 656 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82866 795 1015 1.83E-40 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.70.1440 657 853 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82714 712 793 7.19E-17 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.2090.10 178 269 8.1E-278 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82714 182 265 5.1E-15 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82693 137 324 3.27E-21 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:1.20.1640.10 505 1011 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82866 290 489 1.83E-46 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.70.1430 40 804 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.70.1320 134 326 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:1.20.1640.10 10 504 8.1E-278 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 SUPERFAMILY SSF82693 40 134 1.91E-21 T 31-10-2018 BRM88_22345 991d850be45003dc671855993432bad3 1046 Gene3D G3DSA:3.30.2090.10 708 796 8.1E-278 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_08280 1342c23205b36df990f3406a5a7fa60a 455 Pfam PF00982 Glycosyltransferase family 20 16 453 6.1E-120 T 31-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 BRM88_08280 1342c23205b36df990f3406a5a7fa60a 455 Gene3D G3DSA:3.40.50.2000 230 438 3.5E-152 T 31-10-2018 BRM88_08280 1342c23205b36df990f3406a5a7fa60a 455 SUPERFAMILY SSF53756 2 454 5.84E-140 T 31-10-2018 BRM88_08280 1342c23205b36df990f3406a5a7fa60a 455 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 453 1.1E-180 T 31-10-2018 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 BRM88_08280 1342c23205b36df990f3406a5a7fa60a 455 Gene3D G3DSA:3.40.50.2000 19 449 3.5E-152 T 31-10-2018 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Pfam PF04055 Radical SAM superfamily 184 363 7.1E-28 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 184 204 - T 31-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Pfam PF00919 Uncharacterized protein family UPF0004 37 137 1.0E-29 T 31-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Pfam PF01938 TRAM domain 416 477 1.0E-19 T 31-10-2018 IPR002792 TRAM domain BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 SMART SM00729 180 405 1.4E-57 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 37 475 2.6E-147 T 31-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Gene3D G3DSA:3.40.50.12160 37 170 4.9E-34 T 31-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 36 478 72.865 T 31-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 37 477 1.7E-179 T 31-10-2018 BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 Gene3D G3DSA:3.80.30.20 178 418 3.7E-81 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BRM88_14610 a01523ba4ae2c4ea1c3ca2bfa1081d28 484 SUPERFAMILY SSF102114 162 410 5.62E-59 T 31-10-2018 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 Gene3D G3DSA:3.40.50.720 160 315 2.5E-135 T 31-10-2018 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 SUPERFAMILY SSF50129 9 172 5.17E-47 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 Pfam PF00107 Zinc-binding dehydrogenase 186 309 4.9E-25 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 144 1.3E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 SUPERFAMILY SSF51735 151 313 2.02E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 SMART SM00829 11 343 1.4E-5 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 Gene3D G3DSA:3.90.180.10 13 343 2.5E-135 T 31-10-2018 BRM88_01340 3bad77ee670d01f8f93ee0e8fb4da97d 352 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 SMART SM00490 255 336 3.3E-29 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 SMART SM00382 38 209 0.0029 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Gene3D G3DSA:3.40.50.300 215 386 4.4E-45 T 31-10-2018 BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 SUPERFAMILY SSF52540 71 352 4.07E-69 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Pfam PF03880 DbpA RNA binding domain 386 456 9.4E-23 T 31-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Pfam PF00270 DEAD/DEAH box helicase 26 189 5.1E-44 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 SMART SM00487 21 219 4.0E-55 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Gene3D G3DSA:3.40.50.300 1 209 8.1E-69 T 31-10-2018 BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Pfam PF00271 Helicase conserved C-terminal domain 237 336 8.9E-28 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_14305 7d27f200c69492afdaaf91634647a91a 458 Gene3D G3DSA:3.30.70.330 387 458 2.0E-19 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 SUPERFAMILY SSF55681 117 446 1.64E-98 T 31-10-2018 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 447 38.912 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PIRSF PIRSF001529 1 449 6.7E-161 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 SUPERFAMILY SSF46589 1 113 3.56E-24 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 Gene3D G3DSA:3.30.930.10 106 449 4.7E-117 T 31-10-2018 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 Gene3D G3DSA:1.10.287.40 1 105 3.9E-14 T 31-10-2018 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 442 9.8E-158 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 4.2E-27 T 31-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 249 425 2.0E-34 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PRINTS PR00981 Seryl-tRNA synthetase signature 301 314 3.1E-33 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PRINTS PR00981 Seryl-tRNA synthetase signature 376 392 3.1E-33 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PRINTS PR00981 Seryl-tRNA synthetase signature 358 374 3.1E-33 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PRINTS PR00981 Seryl-tRNA synthetase signature 341 354 3.1E-33 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_11015 a7245c54a079abc2427dd06ca68e5bee 449 PRINTS PR00981 Seryl-tRNA synthetase signature 289 301 3.1E-33 T 31-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 SUPERFAMILY SSF48163 299 461 1.57E-35 T 31-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 5.9E-24 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 5.9E-24 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 5.9E-24 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 5.9E-24 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 5.9E-24 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 SUPERFAMILY SSF52374 4 295 2.41E-105 T 31-10-2018 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 459 5.9E-167 T 31-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 305 1.6E-100 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 Gene3D G3DSA:1.10.10.350 369 465 1.5E-21 T 31-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 30.502 T 31-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BRM88_07770 75947d414a4163d310a7b7ef3a1db127 467 Gene3D G3DSA:3.40.50.620 2 314 6.2E-129 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 Pfam PF01472 PUA domain 290 367 2.7E-21 T 31-10-2018 IPR002478 PUA domain GO:0003723 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 SUPERFAMILY SSF53633 20 269 1.7E-58 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 PRINTS PR00474 Glutamate 5-kinase family signature 222 242 1.7E-39 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 PRINTS PR00474 Glutamate 5-kinase family signature 57 71 1.7E-39 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 PRINTS PR00474 Glutamate 5-kinase family signature 161 188 1.7E-39 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 PRINTS PR00474 Glutamate 5-kinase family signature 129 150 1.7E-39 T 31-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 TIGRFAM TIGR01027 proB: glutamate 5-kinase 21 382 3.1E-121 T 31-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 SUPERFAMILY SSF88697 290 383 2.21E-21 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 Gene3D G3DSA:3.40.1160.10 12 278 2.7E-75 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 SMART SM00359 290 376 2.6E-15 T 31-10-2018 IPR002478 PUA domain GO:0003723 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 ProSitePatterns PS00902 Glutamate 5-kinase signature. 220 237 - T 31-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 Pfam PF00696 Amino acid kinase family 21 248 6.8E-37 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 Gene3D G3DSA:2.30.130.10 279 384 7.1E-30 T 31-10-2018 IPR036974 PUA domain superfamily GO:0003723 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 Hamap MF_00456 Glutamate 5-kinase [proB]. 20 272 34.903 T 31-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_14045 fcae618af5354525da37858ee82a9c2d 384 PIRSF PIRSF000729 17 384 1.2E-132 T 31-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BRM88_03530 327858a37c54256f733d560923d8154e 268 Gene3D G3DSA:3.40.50.720 6 267 7.4E-69 T 31-10-2018 BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 3.8E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 154 182 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 157 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 2.7E-39 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03530 327858a37c54256f733d560923d8154e 268 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 262 1.4E-60 T 31-10-2018 BRM88_03530 327858a37c54256f733d560923d8154e 268 SUPERFAMILY SSF51735 16 262 1.78E-67 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 SMART SM00382 57 230 2.4E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 165 194 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 127 156 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 212 240 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 93 122 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 299 316 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 PRINTS PR00142 RecA protein signature 245 274 2.8E-85 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 Gene3D G3DSA:3.40.50.300 30 270 1.5E-78 T 31-10-2018 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 Gene3D G3DSA:3.30.250.10 271 343 9.9E-26 T 31-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 SUPERFAMILY SSF54752 270 327 1.06E-20 T 31-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 SUPERFAMILY SSF52540 4 269 1.75E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 Pfam PF00154 recA bacterial DNA recombination protein 7 270 4.2E-138 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 326 3.6E-164 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 Hamap MF_00268 Protein RecA [recA]. 5 331 50.275 T 31-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BRM88_15685 0333d8c606cb32a7617bfcbb1ae43b09 344 ProSitePatterns PS00321 recA signature. 215 223 - T 31-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Gene3D G3DSA:3.55.50.10 15 69 3.4E-36 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 15 379 5.6E-62 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 445 549 1.3E-33 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Pfam PF05954 Phage late control gene D protein (GPD) 11 215 2.3E-40 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Gene3D G3DSA:2.40.50.230 275 379 3.7E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 11 380 1.2E-49 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 SUPERFAMILY SSF69279 15 64 4.08E-12 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 SUPERFAMILY SSF69255 281 375 5.75E-25 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Gene3D G3DSA:2.30.110.50 70 213 3.4E-36 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 610 767 1.5E-33 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 SUPERFAMILY SSF69279 90 270 1.09E-9 T 31-10-2018 BRM88_07460 dfd6d7b1d3d0c7b2fb9a315a0c195bba 800 Gene3D G3DSA:3.30.1920.30 105 168 3.4E-36 T 31-10-2018 BRM88_12030 5567d90ad02799b8c2a81373eea6b012 73 SUPERFAMILY SSF46689 8 71 2.69E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_12030 5567d90ad02799b8c2a81373eea6b012 73 Pfam PF01527 Transposase 6 51 2.9E-5 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BRM88_12030 5567d90ad02799b8c2a81373eea6b012 73 Gene3D G3DSA:1.10.10.60 4 65 2.3E-5 T 31-10-2018 BRM88_06275 5567d90ad02799b8c2a81373eea6b012 73 SUPERFAMILY SSF46689 8 71 2.69E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_06275 5567d90ad02799b8c2a81373eea6b012 73 Pfam PF01527 Transposase 6 51 2.9E-5 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BRM88_06275 5567d90ad02799b8c2a81373eea6b012 73 Gene3D G3DSA:1.10.10.60 4 65 2.3E-5 T 31-10-2018 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 Pfam PF02609 Exonuclease VII small subunit 15 65 1.9E-19 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 15 68 2.5E-22 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 PIRSF PIRSF006488 1 84 4.3E-25 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 28 56 4.0E-10 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 SUPERFAMILY SSF116842 13 72 1.83E-18 T 31-10-2018 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 14 74 15.826 T 31-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BRM88_17605 cfabe87edf0d49db2d761aafd5237762 86 Gene3D G3DSA:1.10.287.1040 9 85 3.6E-24 T 31-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.2E-41 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.2E-41 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.2E-41 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.2E-41 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Gene3D G3DSA:3.40.50.300 148 342 4.8E-74 T 31-10-2018 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 769 849 1.5E-26 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Gene3D G3DSA:1.10.8.60 769 861 9.7E-28 T 31-10-2018 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Gene3D G3DSA:3.40.50.300 343 544 5.3E-69 T 31-10-2018 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SMART SM00382 597 770 9.2E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SMART SM00382 198 344 3.1E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Gene3D G3DSA:3.40.50.300 550 767 6.4E-86 T 31-10-2018 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 5.9E-12 T 31-10-2018 IPR004176 Clp, N-terminal BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 145 4.4E-8 T 31-10-2018 IPR004176 Clp, N-terminal BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 858 0.0 T 31-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Gene3D G3DSA:1.10.1780.10 1 147 8.8E-32 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SUPERFAMILY SSF81923 4 156 5.3E-40 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SUPERFAMILY SSF52540 159 545 2.12E-99 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SUPERFAMILY SSF52540 546 852 2.59E-81 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 SMART SM01086 769 858 1.9E-37 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 763 5.8E-55 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_06845 0c1fa4822754948ceaca0eb0e78c0732 861 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 336 6.1E-13 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 Gene3D G3DSA:3.30.420.40 90 224 1.3E-19 T 31-10-2018 BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 SUPERFAMILY SSF46785 27 85 3.22E-7 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 Pfam PF00480 ROK family 102 258 2.9E-16 T 31-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 Gene3D G3DSA:1.10.10.10 17 88 4.2E-8 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 Gene3D G3DSA:3.30.420.40 225 349 6.3E-12 T 31-10-2018 BRM88_00800 807e7c9e0489af939f487694b90ef38b 385 SUPERFAMILY SSF53067 95 381 1.47E-25 T 31-10-2018 BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 Pfam PF05227 CHASE3 domain 40 174 3.7E-32 T 31-10-2018 IPR007891 CHASE3 BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 SUPERFAMILY SSF55073 404 559 3.3E-49 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 Gene3D G3DSA:3.30.70.270 396 563 9.6E-59 T 31-10-2018 BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 Pfam PF00990 Diguanylate cyclase, GGDEF domain 400 557 9.6E-49 T 31-10-2018 IPR000160 GGDEF domain BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 Gene3D G3DSA:1.20.1440.210 46 172 1.8E-27 T 31-10-2018 BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 SMART SM00267 388 561 2.5E-62 T 31-10-2018 IPR000160 GGDEF domain BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 SUPERFAMILY SSF55781 257 398 1.29E-11 T 31-10-2018 BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 395 559 3.9E-56 T 31-10-2018 IPR000160 GGDEF domain BRM88_09795 9a8d8d8f227d7fb899c6f852e4fe92fb 569 Gene3D G3DSA:3.30.450.40 208 395 3.4E-15 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_06995 58614fdef2a792eb7feef92334864fca 799 Pfam PF00593 TonB dependent receptor 301 798 1.3E-30 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06995 58614fdef2a792eb7feef92334864fca 799 Gene3D G3DSA:2.170.130.10 32 175 4.0E-35 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_06995 58614fdef2a792eb7feef92334864fca 799 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 171 1.8E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_06995 58614fdef2a792eb7feef92334864fca 799 SUPERFAMILY SSF56935 36 799 2.6E-100 T 31-10-2018 BRM88_06995 58614fdef2a792eb7feef92334864fca 799 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 43 - T 31-10-2018 IPR010916 TonB box, conserved site BRM88_06995 58614fdef2a792eb7feef92334864fca 799 Gene3D G3DSA:2.40.170.20 194 799 2.6E-50 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_00505 9b0d6bf6ce81210b9ee7dea4be286aef 317 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 240 309 7.8E-12 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) BRM88_00505 9b0d6bf6ce81210b9ee7dea4be286aef 317 Gene3D G3DSA:2.30.330.10 224 316 3.6E-21 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_00505 9b0d6bf6ce81210b9ee7dea4be286aef 317 SUPERFAMILY SSF101801 237 312 8.37E-13 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_00505 9b0d6bf6ce81210b9ee7dea4be286aef 317 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 37 309 1.5E-52 T 31-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 BRM88_13470 95bf6e3723e3903ba7687300d3d87b06 396 SMART SM00283 89 350 1.6E-11 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_13470 95bf6e3723e3903ba7687300d3d87b06 396 SUPERFAMILY SSF58104 57 342 2.49E-44 T 31-10-2018 BRM88_13470 95bf6e3723e3903ba7687300d3d87b06 396 Gene3D G3DSA:1.10.287.950 62 350 2.7E-44 T 31-10-2018 BRM88_13470 95bf6e3723e3903ba7687300d3d87b06 396 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 163 307 7.5E-30 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.0E-47 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 68.388 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 2.1E-49 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 PIRSF PIRSF006246 1 126 1.6E-48 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 Gene3D G3DSA:2.40.40.20 1 126 2.6E-53 T 31-10-2018 BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 SUPERFAMILY SSF50692 1 121 1.24E-46 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BRM88_12520 babd76a19e013be79307f2abdbc8576f 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 122 2.0E-64 T 31-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 SUPERFAMILY SSF51261 65 260 9.42E-46 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 SMART SM00257 64 108 8.2E-16 T 31-10-2018 IPR018392 LysM domain BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 Pfam PF01476 LysM domain 65 107 7.0E-16 T 31-10-2018 IPR018392 LysM domain BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 Gene3D G3DSA:2.70.70.10 116 262 1.9E-34 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 Pfam PF01551 Peptidase family M23 163 256 1.0E-28 T 31-10-2018 IPR016047 Peptidase M23 BRM88_15745 532da2f6469bfb00f28e30f7f3b662ae 263 Gene3D G3DSA:3.10.350.10 62 113 1.1E-16 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_17490 6949c64e67e7493456f30d527689385f 144 PIRSF PIRSF000714 12 144 4.4E-49 T 31-10-2018 IPR026026 Histidine triad hydrolase, Hint-type BRM88_17490 6949c64e67e7493456f30d527689385f 144 Pfam PF01230 HIT domain 21 109 8.1E-9 T 31-10-2018 IPR001310 Histidine triad (HIT) protein BRM88_17490 6949c64e67e7493456f30d527689385f 144 Gene3D G3DSA:3.30.428.10 11 144 5.5E-34 T 31-10-2018 IPR036265 HIT-like superfamily BRM88_17490 6949c64e67e7493456f30d527689385f 144 SUPERFAMILY SSF54197 14 143 4.25E-29 T 31-10-2018 IPR036265 HIT-like superfamily BRM88_22955 5d673833410dd10e37ae1495fd486497 297 SUPERFAMILY SSF55298 194 294 2.36E-8 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_22955 5d673833410dd10e37ae1495fd486497 297 Gene3D G3DSA:3.30.1330.40 172 296 1.2E-13 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 7.2E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 7.2E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 7.2E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 7.2E-25 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 400 45.427 T 31-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 Gene3D G3DSA:3.40.50.620 4 217 3.1E-74 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 SUPERFAMILY SSF52374 4 314 1.58E-86 T 31-10-2018 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 SUPERFAMILY SSF55174 332 399 2.35E-14 T 31-10-2018 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 Gene3D G3DSA:3.10.290.10 331 400 6.7E-19 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 Pfam PF00579 tRNA synthetases class I (W and Y) 33 312 8.9E-71 T 31-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 9 399 2.8E-108 T 31-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 Gene3D G3DSA:1.10.240.10 218 330 2.5E-21 T 31-10-2018 BRM88_02575 08be0fe93ea93fc0bb1571de3f261c61 403 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_20445 c482fbc2e63732da51a7992823d47598 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 5 149 5.4E-29 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BRM88_20445 c482fbc2e63732da51a7992823d47598 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 40.601 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BRM88_20445 c482fbc2e63732da51a7992823d47598 151 Gene3D G3DSA:2.40.330.20 2 148 7.9E-34 T 31-10-2018 IPR038619 MraZ superfamily BRM88_20445 c482fbc2e63732da51a7992823d47598 151 Pfam PF02381 MraZ protein, putative antitoxin-like 88 136 3.0E-12 T 31-10-2018 IPR020603 MraZ domain BRM88_20445 c482fbc2e63732da51a7992823d47598 151 Pfam PF02381 MraZ protein, putative antitoxin-like 5 78 5.1E-8 T 31-10-2018 IPR020603 MraZ domain BRM88_20445 c482fbc2e63732da51a7992823d47598 151 SUPERFAMILY SSF89447 3 139 5.16E-36 T 31-10-2018 IPR037914 SpoVT-AbrB domain superfamily BRM88_20445 c482fbc2e63732da51a7992823d47598 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 4 128 4.0E-69 T 31-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BRM88_13760 7c330f194807e58df31233d5c825a586 990 Pfam PF07495 Y_Y_Y domain 687 744 4.7E-9 T 31-10-2018 IPR011123 Two component regulator three Y BRM88_13760 7c330f194807e58df31233d5c825a586 990 Pfam PF07494 Two component regulator propeller 52 74 0.012 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_13760 7c330f194807e58df31233d5c825a586 990 Pfam PF00990 Diguanylate cyclase, GGDEF domain 813 967 3.4E-38 T 31-10-2018 IPR000160 GGDEF domain BRM88_13760 7c330f194807e58df31233d5c825a586 990 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 811 970 2.0E-39 T 31-10-2018 IPR000160 GGDEF domain BRM88_13760 7c330f194807e58df31233d5c825a586 990 Gene3D G3DSA:3.30.70.270 798 971 3.6E-51 T 31-10-2018 BRM88_13760 7c330f194807e58df31233d5c825a586 990 SUPERFAMILY SSF55073 818 968 1.26E-42 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_13760 7c330f194807e58df31233d5c825a586 990 Gene3D G3DSA:2.60.40.10 665 756 8.1E-9 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_13760 7c330f194807e58df31233d5c825a586 990 SMART SM00267 802 971 2.6E-47 T 31-10-2018 IPR000160 GGDEF domain BRM88_13760 7c330f194807e58df31233d5c825a586 990 Gene3D G3DSA:2.130.10.10 189 437 1.8E-11 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13760 7c330f194807e58df31233d5c825a586 990 Gene3D G3DSA:2.130.10.10 443 647 2.6E-22 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13760 7c330f194807e58df31233d5c825a586 990 Gene3D G3DSA:2.130.10.10 22 165 2.6E-12 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13760 7c330f194807e58df31233d5c825a586 990 SUPERFAMILY SSF63829 389 632 1.7E-10 T 31-10-2018 BRM88_13760 7c330f194807e58df31233d5c825a586 990 SUPERFAMILY SSF63829 54 244 9.81E-9 T 31-10-2018 BRM88_21690 ed49d62ab725aa1302f3c1d100f5dd96 168 PIRSF PIRSF019239 8 168 4.2E-37 T 31-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BRM88_21690 ed49d62ab725aa1302f3c1d100f5dd96 168 Pfam PF01899 Na+/H+ ion antiporter subunit 19 166 4.8E-41 T 31-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 Pfam PF13567 Domain of unknown function (DUF4131) 24 204 1.4E-21 T 31-10-2018 IPR025405 Domain of unknown function DUF4131 BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 SMART SM00849 548 733 3.5E-10 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 Pfam PF03772 Competence protein 244 511 1.9E-58 T 31-10-2018 IPR004477 ComEC/Rec2-related protein BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 266 442 6.3E-25 T 31-10-2018 IPR004477 ComEC/Rec2-related protein BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 Gene3D G3DSA:3.60.15.10 536 772 1.9E-46 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 162 762 3.2E-99 T 31-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 SUPERFAMILY SSF56281 538 774 3.8E-42 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_12150 d853d129743c1fe7f22d2440eed038db 802 Pfam PF00753 Metallo-beta-lactamase superfamily 545 760 3.4E-11 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_18705 171849513e70928f5da344aaddae23f8 580 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 218 329 1.0E-17 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_18705 171849513e70928f5da344aaddae23f8 580 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 18 200 2.3E-10 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_15760 67b0e2fc4dfe56abdececf489dc8c306 259 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 236 6.4E-69 T 31-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BRM88_15760 67b0e2fc4dfe56abdececf489dc8c306 259 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 253 40.871 T 31-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BRM88_15760 67b0e2fc4dfe56abdececf489dc8c306 259 SUPERFAMILY SSF64167 1 249 6.41E-84 T 31-10-2018 BRM88_15760 67b0e2fc4dfe56abdececf489dc8c306 259 Pfam PF01975 Survival protein SurE 3 185 4.1E-60 T 31-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BRM88_15760 67b0e2fc4dfe56abdececf489dc8c306 259 Gene3D G3DSA:3.40.1210.10 1 252 9.2E-92 T 31-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BRM88_10985 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_10985 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_07950 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07950 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13870 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13870 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20835 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_20835 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13275 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13275 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_12050 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_12050 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20770 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_20770 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_07480 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07480 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_10875 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_10875 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16355 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_16355 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_08130 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_08130 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16460 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_16460 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_14865 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_14865 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_05500 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_05500 ffdb897f3132d340c8f947fabcad92a9 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 5.0E-176 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 Pfam PF00709 Adenylosuccinate synthetase 5 422 2.9E-175 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 Gene3D G3DSA:1.10.300.10 102 201 1.3E-97 T 31-10-2018 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 207.451 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 31-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 SMART SM00788 4 424 3.7E-286 T 31-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 SUPERFAMILY SSF52540 4 429 2.87E-174 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 Gene3D G3DSA:3.40.440.10 6 249 1.3E-97 T 31-10-2018 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 31-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BRM88_04645 26a54fa0595bb3eee47c708f0c23656a 430 Gene3D G3DSA:3.90.170.10 267 430 1.2E-68 T 31-10-2018 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Gene3D G3DSA:3.90.1200.10 822 1114 9.0E-53 T 31-10-2018 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Gene3D G3DSA:3.90.400.10 120 190 5.7E-219 T 31-10-2018 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 SUPERFAMILY SSF56112 743 1060 3.23E-12 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 21 558 8.2E-300 T 31-10-2018 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622|MetaCyc: PWY-7900 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Pfam PF00128 Alpha amylase, catalytic domain 45 399 2.8E-75 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Gene3D G3DSA:3.20.20.80 21 472 5.7E-219 T 31-10-2018 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 SMART SM00642 30 430 2.0E-107 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 SUPERFAMILY SSF51445 20 475 1.59E-131 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Gene3D G3DSA:2.60.40.1180 478 566 3.9E-28 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 Pfam PF16657 Maltogenic Amylase, C-terminal domain 478 554 1.7E-26 T 31-10-2018 IPR032091 Maltogenic Amylase, C-terminal BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 575 1106 7.4E-214 T 31-10-2018 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain BRM88_00935 5daafd2cff7180a39f51a421e80170d7 1116 SUPERFAMILY SSF51011 478 557 5.16E-17 T 31-10-2018 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 SUPERFAMILY SSF50156 397 474 5.13E-8 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 SUPERFAMILY SSF50156 287 381 2.1E-20 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 61 473 2.1E-126 T 31-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 328 340 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 239 256 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 217 234 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 182 206 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 1.1E-51 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 Gene3D G3DSA:2.30.42.10 398 478 1.6E-10 T 31-10-2018 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 SUPERFAMILY SSF50494 43 297 1.16E-62 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 SMART SM00228 288 370 5.7E-13 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 SMART SM00228 394 470 0.43 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 Gene3D G3DSA:2.30.42.10 283 388 1.7E-23 T 31-10-2018 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 Pfam PF13180 PDZ domain 290 379 2.8E-12 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 Gene3D G3DSA:2.40.10.120 59 281 2.0E-78 T 31-10-2018 BRM88_00615 39fcce85a8dac2730a595fbf6b4113bd 478 Pfam PF13365 Trypsin-like peptidase domain 111 246 6.2E-32 T 31-10-2018 BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 PIRSF PIRSF004848 3 227 3.8E-70 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 SUPERFAMILY SSF51419 5 220 2.36E-70 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 Gene3D G3DSA:3.20.20.10 3 226 8.0E-76 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 7 222 1.4E-69 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 Pfam PF01168 Alanine racemase, N-terminal domain 12 222 7.9E-28 T 31-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BRM88_07275 e8034d60f036313dec2d13e4571d64d6 230 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 4 221 30.365 T 31-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BRM88_06985 69e76827dfba0a6f2c2caffa6b6a18e0 565 Pfam PF02254 TrkA-N domain 425 537 1.9E-21 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BRM88_06985 69e76827dfba0a6f2c2caffa6b6a18e0 565 SUPERFAMILY SSF51735 422 553 8.76E-27 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06985 69e76827dfba0a6f2c2caffa6b6a18e0 565 Pfam PF00999 Sodium/hydrogen exchanger family 12 391 8.5E-80 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BRM88_06985 69e76827dfba0a6f2c2caffa6b6a18e0 565 Gene3D G3DSA:3.40.50.720 419 555 6.1E-29 T 31-10-2018 BRM88_06985 69e76827dfba0a6f2c2caffa6b6a18e0 565 Gene3D G3DSA:1.20.1530.20 5 404 4.5E-80 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 Gene3D G3DSA:3.65.10.10 26 235 3.9E-149 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 12 423 2.0E-115 T 31-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 SUPERFAMILY SSF55205 9 431 7.52E-124 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 ProSitePatterns PS00885 EPSP synthase signature 2. 345 363 - T 31-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 18 428 8.9E-121 T 31-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 14 433 31.832 T 31-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 Gene3D G3DSA:3.65.10.10 18 423 3.9E-149 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 PIRSF PIRSF000505 5 436 1.3E-116 T 31-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BRM88_12650 e364cd58d9466a30119d2d4c8409488d 440 ProSitePatterns PS00104 EPSP synthase signature 1. 93 107 - T 31-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BRM88_21710 cef6ed96f20b864bb2f5081b4d807d08 441 Gene3D G3DSA:2.60.120.10 271 399 1.1E-59 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_21710 cef6ed96f20b864bb2f5081b4d807d08 441 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 6 428 2.5E-203 T 31-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 BRM88_21710 cef6ed96f20b864bb2f5081b4d807d08 441 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 6 430 71.174 T 31-10-2018 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5 BRM88_21710 cef6ed96f20b864bb2f5081b4d807d08 441 SUPERFAMILY SSF51182 5 430 3.16E-173 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_21710 cef6ed96f20b864bb2f5081b4d807d08 441 Pfam PF04209 homogentisate 1,2-dioxygenase 6 428 3.5E-206 T 31-10-2018 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 160 174 - T 31-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 18 252 37.861 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 Pfam PF01209 ubiE/COQ5 methyltransferase family 23 252 4.5E-90 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 27 252 7.2E-81 T 31-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 38 53 - T 31-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 Gene3D G3DSA:3.40.50.150 33 253 2.7E-73 T 31-10-2018 BRM88_21245 4c6ee1277ae3c2fd99d6a925857c760d 253 SUPERFAMILY SSF53335 22 249 1.05E-43 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 Pfam PF01252 Signal peptidase (SPase) II 17 157 9.3E-36 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 TIGRFAM TIGR00077 lspA: signal peptidase II 10 162 7.9E-41 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 163 16.069 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 ProSitePatterns PS00855 Signal peptidases II signature. 105 117 - T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 138 154 5.9E-16 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 102 117 5.9E-16 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_08420 5152d0220503deb8f2ae5e6ddc7bf043 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 54 62 5.9E-16 T 31-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 Pfam PF00326 Prolyl oligopeptidase family 447 655 5.8E-44 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 SUPERFAMILY SSF82171 58 381 2.94E-16 T 31-10-2018 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 SUPERFAMILY SSF53474 393 654 1.52E-68 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23255 8c39cc496f16a87518b0cea342406640 694 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 451 475 1.5E-5 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 587 609 1.5E-5 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 509 529 1.5E-5 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 479 498 1.5E-5 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_23255 8c39cc496f16a87518b0cea342406640 694 Gene3D G3DSA:3.40.50.1820 364 665 1.7E-76 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23255 8c39cc496f16a87518b0cea342406640 694 Gene3D G3DSA:2.120.10.30 34 233 2.3E-12 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_01210 ac8df507b9fd3a54004650087759759d 509 SUPERFAMILY SSF51905 8 425 1.02E-25 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_01210 ac8df507b9fd3a54004650087759759d 509 Pfam PF04820 Tryptophan halogenase 8 468 1.1E-198 T 31-10-2018 IPR006905 Flavin-dependent halogenase BRM88_01210 ac8df507b9fd3a54004650087759759d 509 PIRSF PIRSF011396 1 504 4.3E-196 T 31-10-2018 IPR033856 Flavin-dependent tryptophan halogenase BRM88_01210 ac8df507b9fd3a54004650087759759d 509 Gene3D G3DSA:3.50.50.60 6 499 1.3E-187 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 SUPERFAMILY SSF54211 92 172 9.1E-25 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 Pfam PF03719 Ribosomal protein S5, C-terminal domain 102 170 5.5E-28 T 31-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 Pfam PF00333 Ribosomal protein S5, N-terminal domain 26 87 4.2E-25 T 31-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 Gene3D G3DSA:3.30.230.10 87 179 1.3E-35 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 24 176 6.4E-64 T 31-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 176 33.995 T 31-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 ProSitePatterns PS00585 Ribosomal protein S5 signature. 41 73 - T 31-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 Gene3D G3DSA:3.30.160.20 15 85 2.7E-27 T 31-10-2018 BRM88_19030 7cdf57728322e036d4ea46c3006cb413 180 SUPERFAMILY SSF54768 22 89 1.57E-20 T 31-10-2018 BRM88_20515 08b306042378fddf0a2f490577a71486 30 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 4 30 7.3E-11 T 31-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 SUPERFAMILY SSF47413 37 95 1.02E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 Gene3D G3DSA:1.10.260.40 30 94 1.7E-14 T 31-10-2018 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 Gene3D G3DSA:3.40.50.2300 98 342 2.7E-65 T 31-10-2018 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 Pfam PF13377 Periplasmic binding protein-like domain 207 364 1.7E-31 T 31-10-2018 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 Pfam PF00356 Bacterial regulatory proteins, lacI family 39 84 4.7E-10 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 Gene3D G3DSA:3.40.50.2300 197 324 2.7E-65 T 31-10-2018 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 SMART SM00354 37 107 5.7E-18 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_10775 455e5f9721fcdcc362459a78ae884512 391 SUPERFAMILY SSF53822 95 351 1.71E-58 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_20060 32f2c86bdb1eafe033ed2ec7164f1e93 167 Gene3D G3DSA:3.40.50.1110 21 165 2.7E-19 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_20060 32f2c86bdb1eafe033ed2ec7164f1e93 167 SUPERFAMILY SSF52266 33 163 2.44E-27 T 31-10-2018 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 PIRSF PIRSF036483 2 417 5.1E-218 T 31-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 Pfam PF00365 Phosphofructokinase 9 321 1.2E-48 T 31-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 Gene3D G3DSA:3.40.50.460 139 385 6.5E-142 T 31-10-2018 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 192 2.4E-9 T 31-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 8 27 2.4E-9 T 31-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 134 151 2.4E-9 T 31-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 256 278 2.4E-9 T 31-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 Gene3D G3DSA:3.40.50.450 5 394 6.5E-142 T 31-10-2018 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 Hamap MF_01978 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 3 398 44.392 T 31-10-2018 IPR011404 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase, XF0274 GO:0006096|GO:0047334 KEGG: 00010+2.7.1.90|KEGG: 00030+2.7.1.90|KEGG: 00051+2.7.1.90|MetaCyc: PWY-1042 BRM88_04860 a42bf643a5c48427b6fb424bd09bb174 418 SUPERFAMILY SSF53784 5 416 4.71E-104 T 31-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Pfam PF00271 Helicase conserved C-terminal domain 235 343 5.4E-28 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 SUPERFAMILY SSF52540 78 364 6.39E-75 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Gene3D G3DSA:3.40.50.300 218 434 8.9E-51 T 31-10-2018 BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 SMART SM00490 262 343 1.4E-32 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 SMART SM00487 28 226 1.2E-63 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Pfam PF03880 DbpA RNA binding domain 515 584 1.5E-22 T 31-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Gene3D G3DSA:3.40.50.300 9 214 3.2E-75 T 31-10-2018 BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Gene3D G3DSA:3.30.70.330 515 587 7.6E-14 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 4 586 47.316 T 31-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 Pfam PF00270 DEAD/DEAH box helicase 34 197 2.9E-51 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_08005 6256e3897af9a6b653a6b274cdd1d9a6 634 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 157 165 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BRM88_09715 2394fd475c83ed83b5a720c247bf8d82 227 Gene3D G3DSA:3.40.30.10 1 207 1.5E-66 T 31-10-2018 BRM88_09715 2394fd475c83ed83b5a720c247bf8d82 227 Pfam PF01323 DSBA-like thioredoxin domain 2 204 2.8E-38 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BRM88_09715 2394fd475c83ed83b5a720c247bf8d82 227 SUPERFAMILY SSF52833 2 211 2.67E-43 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PIRSF PIRSF036480 8 289 1.1E-112 T 31-10-2018 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 Pfam PF00551 Formyl transferase 94 270 4.6E-41 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 13 39 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 94 116 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 116 143 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 240 262 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 262 287 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 45 57 1.1E-51 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 8 288 48.042 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 SUPERFAMILY SSF55021 11 89 7.08E-21 T 31-10-2018 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 Gene3D G3DSA:3.30.70.260 6 92 1.0E-31 T 31-10-2018 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 Gene3D G3DSA:3.40.50.170 93 288 1.6E-71 T 31-10-2018 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 Pfam PF01842 ACT domain 11 72 1.6E-7 T 31-10-2018 IPR002912 ACT domain BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 SUPERFAMILY SSF53328 94 289 4.45E-62 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_23075 ae3996dae7abd1bee4931bec4b72bcab 289 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 12 288 6.8E-101 T 31-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 Gene3D G3DSA:2.170.130.10 34 178 1.2E-15 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 Pfam PF00593 TonB dependent receptor 421 896 1.9E-44 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 SUPERFAMILY SSF56935 31 897 1.98E-98 T 31-10-2018 BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 42 897 5.7E-233 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 173 2.0E-14 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_09340 5091aab256ab27a3190ad9d097d1579c 897 Gene3D G3DSA:2.40.170.20 272 897 8.9E-54 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Gene3D G3DSA:1.20.272.10 249 351 2.7E-40 T 31-10-2018 BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Pfam PF12002 MgsA AAA+ ATPase C terminal 275 440 3.5E-62 T 31-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Gene3D G3DSA:1.10.8.60 174 248 4.2E-17 T 31-10-2018 BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 62 170 4.2E-14 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 SUPERFAMILY SSF52540 22 242 9.85E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Gene3D G3DSA:1.10.3710.10 352 453 3.9E-32 T 31-10-2018 BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 SMART SM00382 58 174 9.7E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Pfam PF16193 AAA C-terminal domain 196 273 1.7E-21 T 31-10-2018 IPR032423 AAA C-terminal domain BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 Gene3D G3DSA:3.40.50.300 15 172 1.1E-43 T 31-10-2018 BRM88_13390 fbe6592ddabfe315fb139f06e53e7862 458 SUPERFAMILY SSF48019 258 440 5.44E-69 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 SUPERFAMILY SSF51011 569 635 1.98E-6 T 31-10-2018 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 SUPERFAMILY SSF51445 18 557 1.06E-96 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 Gene3D G3DSA:1.10.1740.10 1 90 1.7E-41 T 31-10-2018 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 Pfam PF00128 Alpha amylase, catalytic domain 103 311 3.1E-32 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 Gene3D G3DSA:3.20.20.80 94 551 1.7E-193 T 31-10-2018 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 Gene3D G3DSA:3.90.400.10 180 252 1.7E-193 T 31-10-2018 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 SMART SM00642 95 535 9.4E-27 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_05575 6c073be158e8b5d5a62760d586db6308 638 Gene3D G3DSA:2.60.40.1180 562 638 8.6E-33 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_02535 a9e93cf777027cd89a9753ef1d1d3e30 265 SUPERFAMILY SSF52540 1 252 4.34E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02535 a9e93cf777027cd89a9753ef1d1d3e30 265 Pfam PF13614 AAA domain 3 177 2.7E-63 T 31-10-2018 IPR025669 AAA domain BRM88_02535 a9e93cf777027cd89a9753ef1d1d3e30 265 Gene3D G3DSA:3.40.50.300 1 262 4.7E-78 T 31-10-2018 BRM88_02535 a9e93cf777027cd89a9753ef1d1d3e30 265 PIRSF PIRSF009320 90 258 5.2E-8 T 31-10-2018 BRM88_02535 a9e93cf777027cd89a9753ef1d1d3e30 265 PIRSF PIRSF009320 2 54 4.7E-15 T 31-10-2018 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 SUPERFAMILY SSF54980 391 466 4.68E-17 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 PRINTS PR00315 GTP-binding elongation factor signature 63 71 2.2E-11 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 PRINTS PR00315 GTP-binding elongation factor signature 83 93 2.2E-11 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 PRINTS PR00315 GTP-binding elongation factor signature 13 26 2.2E-11 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 PRINTS PR00315 GTP-binding elongation factor signature 135 144 2.2E-11 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 PRINTS PR00315 GTP-binding elongation factor signature 99 110 2.2E-11 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 SUPERFAMILY SSF50447 259 391 1.91E-29 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Gene3D G3DSA:3.30.70.3280 388 527 3.8E-50 T 31-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Gene3D G3DSA:3.40.50.300 70 377 1.9E-109 T 31-10-2018 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 157 1.2E-20 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 1 527 1.4E-252 T 31-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 SUPERFAMILY SSF52540 8 275 7.53E-85 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 525 52.79 T 31-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Pfam PF00009 Elongation factor Tu GTP binding domain 11 275 1.2E-47 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Gene3D G3DSA:3.40.50.300 108 273 1.9E-109 T 31-10-2018 BRM88_09495 e635edf8063c8bd61e309d237d989c78 534 Pfam PF16658 Class II release factor RF3, C-terminal domain 385 512 5.3E-46 T 31-10-2018 IPR032090 Peptide chain release factor 3, C-terminal BRM88_15915 99267a30f96ca683071570a51dad4588 506 Pfam PF04055 Radical SAM superfamily 236 394 2.3E-14 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_15915 99267a30f96ca683071570a51dad4588 506 SMART SM00729 229 439 2.5E-18 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_15915 99267a30f96ca683071570a51dad4588 506 SUPERFAMILY SSF102114 213 422 9.55E-32 T 31-10-2018 BRM88_15915 99267a30f96ca683071570a51dad4588 506 Gene3D G3DSA:3.80.30.20 231 448 2.5E-22 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Gene3D G3DSA:1.10.1740.60 245 341 1.2E-43 T 31-10-2018 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 SMART SM01263 498 637 4.5E-45 T 31-10-2018 IPR015211 Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Pfam PF01433 Peptidase family M1 domain 254 466 9.3E-48 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 SUPERFAMILY SSF63737 46 245 2.75E-37 T 31-10-2018 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Gene3D G3DSA:2.60.40.1730 58 244 1.3E-57 T 31-10-2018 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Gene3D G3DSA:1.25.40.320 498 638 1.9E-39 T 31-10-2018 IPR038502 Peptidase M1 LTA-4 hydrolase/aminopeptidase, C-terminal domain superfamily BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 SUPERFAMILY SSF48371 502 637 1.38E-36 T 31-10-2018 IPR016024 Armadillo-type fold BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 SUPERFAMILY SSF55486 250 491 2.38E-69 T 31-10-2018 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 348 360 1.0E-16 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 183 198 1.0E-16 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 228 243 1.0E-16 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 329 344 1.0E-16 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 302 312 1.0E-16 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Pfam PF09127 Leukotriene A4 hydrolase, C-terminal 526 636 2.7E-25 T 31-10-2018 IPR015211 Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal GO:0008237|GO:0008270 BRM88_21255 b87caf95448cca74c183f53c2c3514b1 670 Gene3D G3DSA:1.10.390.10 342 496 3.9E-45 T 31-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 Gene3D G3DSA:3.50.50.60 11 398 1.4E-65 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 Pfam PF03486 HI0933-like protein 9 403 4.5E-104 T 31-10-2018 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 29 410 1.8E-190 T 31-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 10 403 1.3E-102 T 31-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 Gene3D G3DSA:2.40.30.10 195 351 1.4E-65 T 31-10-2018 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 6.7E-5 T 31-10-2018 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 370 385 6.7E-5 T 31-10-2018 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 SUPERFAMILY SSF160996 196 350 8.24E-8 T 31-10-2018 BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 SUPERFAMILY SSF51905 9 409 3.46E-39 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16475 5324f0c60ffe7ae711dc1eecb0161897 420 Gene3D G3DSA:1.10.8.260 279 334 1.4E-65 T 31-10-2018 IPR023166 HI0933-like insert domain superfamily BRM88_23495 eab32d4431b828db64296267e225a066 654 Gene3D G3DSA:3.40.50.1110 395 549 3.5E-12 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_23495 eab32d4431b828db64296267e225a066 654 Gene3D G3DSA:2.60.120.260 239 394 4.8E-13 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_23495 eab32d4431b828db64296267e225a066 654 Gene3D G3DSA:2.60.40.10 30 106 4.6E-5 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_23495 eab32d4431b828db64296267e225a066 654 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 266 374 1.6E-7 T 31-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_23495 eab32d4431b828db64296267e225a066 654 Gene3D G3DSA:3.40.50.1110 110 233 4.2E-5 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_23495 eab32d4431b828db64296267e225a066 654 SUPERFAMILY SSF49785 245 377 4.25E-17 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_23495 eab32d4431b828db64296267e225a066 654 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 111 212 6.4E-6 T 31-10-2018 IPR005181 Sialate O-acetylesterase domain BRM88_23495 eab32d4431b828db64296267e225a066 654 Pfam PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase 409 538 6.2E-10 T 31-10-2018 IPR005181 Sialate O-acetylesterase domain BRM88_23495 eab32d4431b828db64296267e225a066 654 SUPERFAMILY SSF52266 109 590 2.87E-68 T 31-10-2018 BRM88_03775 7a0a401b5920ed0a5211d61bee45c79f 367 Gene3D G3DSA:3.40.50.1100 36 326 1.5E-65 T 31-10-2018 BRM88_03775 7a0a401b5920ed0a5211d61bee45c79f 367 Gene3D G3DSA:3.40.50.1100 50 156 1.5E-65 T 31-10-2018 BRM88_03775 7a0a401b5920ed0a5211d61bee45c79f 367 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 31 320 5.4E-45 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_03775 7a0a401b5920ed0a5211d61bee45c79f 367 SUPERFAMILY SSF53686 5 338 4.45E-65 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_00065 8a345e09838108de5dc79c395f34442d 255 SUPERFAMILY SSF63892 2 249 3.01E-77 T 31-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BRM88_00065 8a345e09838108de5dc79c395f34442d 255 Gene3D G3DSA:3.20.20.70 1 255 2.7E-90 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_00065 8a345e09838108de5dc79c395f34442d 255 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 253 85.433 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BRM88_00065 8a345e09838108de5dc79c395f34442d 255 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 4 247 1.7E-83 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BRM88_00065 8a345e09838108de5dc79c395f34442d 255 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 5 248 4.4E-64 T 31-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BRM88_18975 85addac2d0da0c94e749d64b77ef54fd 318 SUPERFAMILY SSF53098 165 308 1.97E-19 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_18975 85addac2d0da0c94e749d64b77ef54fd 318 Pfam PF13936 Helix-turn-helix domain 3 45 7.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_13040 f286b8913a37913108cd757359ea450e 236 PIRSF PIRSF003107 6 223 8.8E-58 T 31-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BRM88_13040 f286b8913a37913108cd757359ea450e 236 Gene3D G3DSA:1.20.58.220 1 114 4.5E-28 T 31-10-2018 IPR038078 PhoU-like domain superfamily BRM88_13040 f286b8913a37913108cd757359ea450e 236 SUPERFAMILY SSF109755 11 227 1.67E-64 T 31-10-2018 BRM88_13040 f286b8913a37913108cd757359ea450e 236 Gene3D G3DSA:1.20.58.220 115 226 6.0E-34 T 31-10-2018 IPR038078 PhoU-like domain superfamily BRM88_13040 f286b8913a37913108cd757359ea450e 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 11 219 1.2E-59 T 31-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BRM88_13040 f286b8913a37913108cd757359ea450e 236 Pfam PF01895 PhoU domain 127 210 6.1E-17 T 31-10-2018 IPR026022 PhoU domain BRM88_13040 f286b8913a37913108cd757359ea450e 236 Pfam PF01895 PhoU domain 24 110 8.0E-19 T 31-10-2018 IPR026022 PhoU domain BRM88_00385 b57d4da3c49f77351f3afd6a541d74fc 313 PIRSF PIRSF016660 1 311 8.6E-112 T 31-10-2018 IPR008526 Inner membrane protein YedI BRM88_00385 b57d4da3c49f77351f3afd6a541d74fc 313 Pfam PF05661 Protein of unknown function (DUF808) 4 297 1.7E-110 T 31-10-2018 IPR008526 Inner membrane protein YedI BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 SUPERFAMILY SSF52540 1 507 1.86E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 6.4E-144 T 31-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 Gene3D G3DSA:3.40.50.300 1 243 1.5E-41 T 31-10-2018 BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 507 1.6E-19 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 PIRSF PIRSF003128 1 554 3.4E-143 T 31-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BRM88_10545 2f7b948b67a8deea3e7e4c6eba7b3c9d 554 Gene3D G3DSA:3.40.50.300 245 553 2.6E-49 T 31-10-2018 BRM88_20470 504c3b9e4142b723f4b9f94f30eff61c 576 Gene3D G3DSA:3.40.50.2300 358 561 1.9E-67 T 31-10-2018 BRM88_20470 504c3b9e4142b723f4b9f94f30eff61c 576 Gene3D G3DSA:3.40.50.2300 254 560 1.9E-67 T 31-10-2018 BRM88_20470 504c3b9e4142b723f4b9f94f30eff61c 576 Pfam PF04348 LppC putative lipoprotein 43 567 4.8E-119 T 31-10-2018 IPR007443 Penicillin-binding protein activator LpoA BRM88_20470 504c3b9e4142b723f4b9f94f30eff61c 576 SUPERFAMILY SSF53822 250 572 2.83E-62 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 SUPERFAMILY SSF52058 39 271 1.01E-38 T 31-10-2018 BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 SMART SM00369 58 81 180.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 SMART SM00369 199 223 4.8 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 SMART SM00369 247 270 16.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 SMART SM00369 105 128 240.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 Pfam PF13855 Leucine rich repeat 201 260 6.5E-7 T 31-10-2018 IPR001611 Leucine-rich repeat GO:0005515 BRM88_00590 60611ce635fb1108b9448c4ae59cddff 542 Gene3D G3DSA:3.80.10.10 10 298 1.9E-52 T 31-10-2018 IPR032675 Leucine-rich repeat domain superfamily BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Gene3D G3DSA:2.180.10.10 943 1084 4.0E-8 T 31-10-2018 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Gene3D G3DSA:2.180.10.10 1085 1340 2.1E-18 T 31-10-2018 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 633 664 1.8E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 793 831 4.5E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 867 893 3.1E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 1050 1088 5.8E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 704 735 1.3E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 683 720 2.2E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 838 875 2.2E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF05593 RHS Repeat 751 784 6.8E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Pfam PF15523 Novel toxin 16 1415 1491 1.1E-9 T 31-10-2018 IPR029118 Novel toxin 16 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1261 1341 3.1E-13 T 31-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Gene3D G3DSA:3.90.930.1 765 917 7.1E-9 T 31-10-2018 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 Gene3D G3DSA:3.90.930.1 612 764 1.6E-10 T 31-10-2018 BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 859 893 7.0E-4 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 838 878 1.6E-8 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 292 333 9.0E-5 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 271 306 0.0019 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 691 724 1.3E-7 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 812 837 0.0034 T 31-10-2018 IPR006530 YD repeat BRM88_08110 476cdaf12e1867bf1e2f0f32e27b3bda 1496 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 633 664 6.5E-5 T 31-10-2018 IPR006530 YD repeat BRM88_24170 1178167be6ce89efaaffbc9237489e60 233 SUPERFAMILY SSF46785 42 99 2.91E-8 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_24170 1178167be6ce89efaaffbc9237489e60 233 Gene3D G3DSA:3.30.420.40 100 233 3.0E-16 T 31-10-2018 BRM88_24170 1178167be6ce89efaaffbc9237489e60 233 Gene3D G3DSA:1.10.10.10 21 99 3.3E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_24170 1178167be6ce89efaaffbc9237489e60 233 SUPERFAMILY SSF53067 102 226 2.92E-15 T 31-10-2018 BRM88_24170 1178167be6ce89efaaffbc9237489e60 233 Pfam PF00480 ROK family 106 232 1.8E-5 T 31-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SMART SM00073 3 100 5.8E-25 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SUPERFAMILY SSF55874 345 527 2.36E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 284 342 4.0E-8 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Gene3D G3DSA:2.40.50.180 552 608 7.0E-31 T 31-10-2018 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Gene3D G3DSA:2.30.30.40 529 649 7.0E-31 T 31-10-2018 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SUPERFAMILY SSF47384 284 344 1.45E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Pfam PF01627 Hpt domain 5 98 1.5E-16 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SUPERFAMILY SSF47226 2 128 3.4E-29 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Gene3D G3DSA:3.30.565.10 344 528 7.0E-55 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SUPERFAMILY SSF50341 528 653 3.53E-28 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 528 8.4E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Gene3D G3DSA:1.10.287.560 283 343 2.2E-9 T 31-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SMART SM00387 388 529 3.9E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SMART SM00260 521 653 1.3E-24 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 526 2.2E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 507 2.2E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 483 2.2E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 447 2.2E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 SMART SM01231 283 343 3.8E-13 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Gene3D G3DSA:1.20.120.160 1 135 4.2E-36 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_07645 2d60a0f39048f1fef2883053389602de 665 Pfam PF01584 CheW-like domain 535 655 6.0E-22 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 SMART SM00829 20 339 4.4E-6 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 Gene3D G3DSA:3.90.180.10 11 339 2.5E-118 T 31-10-2018 BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 Pfam PF00107 Zinc-binding dehydrogenase 161 298 3.7E-18 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 Pfam PF16884 N-terminal domain of oxidoreductase 7 109 1.4E-35 T 31-10-2018 BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 SUPERFAMILY SSF50129 5 146 1.1E-38 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 SUPERFAMILY SSF51735 127 305 1.58E-41 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_24035 ba5665e6fcabeea56c4d4e5e724bbd07 342 Gene3D G3DSA:3.40.50.720 129 310 2.5E-118 T 31-10-2018 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 Gene3D G3DSA:2.40.50.620 38 100 2.3E-14 T 31-10-2018 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 Pfam PF00297 Ribosomal protein L3 103 189 5.1E-15 T 31-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 214 38.974 T 31-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 Gene3D G3DSA:2.40.30.10 127 216 2.5E-14 T 31-10-2018 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 211 3.1E-85 T 31-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 SUPERFAMILY SSF50447 5 215 3.97E-78 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_19115 8f66f8842f0aab274a084bef4d093f0d 216 ProSitePatterns PS00474 Ribosomal protein L3 signature. 108 131 - T 31-10-2018 IPR019926 Ribosomal protein L3, conserved site BRM88_14325 01031050817f86da062c8ff62b762747 232 Gene3D G3DSA:3.40.30.10 1 83 8.4E-36 T 31-10-2018 BRM88_14325 01031050817f86da062c8ff62b762747 232 SUPERFAMILY SSF52833 1 81 3.68E-20 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_14325 01031050817f86da062c8ff62b762747 232 Pfam PF00043 Glutathione S-transferase, C-terminal domain 150 211 2.6E-9 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal BRM88_14325 01031050817f86da062c8ff62b762747 232 SUPERFAMILY SSF47616 85 222 4.18E-26 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_14325 01031050817f86da062c8ff62b762747 232 Gene3D G3DSA:1.20.1050.10 89 216 2.5E-28 T 31-10-2018 BRM88_14325 01031050817f86da062c8ff62b762747 232 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 74 4.8E-15 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 Gene3D G3DSA:3.30.70.240 1 96 2.7E-35 T 31-10-2018 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 1 96 5.4E-21 T 31-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 SUPERFAMILY SSF143430 1 89 2.22E-27 T 31-10-2018 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 PIRSF PIRSF032582 1 96 1.4E-38 T 31-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 Pfam PF09827 CRISPR associated protein Cas2 1 78 7.0E-24 T 31-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 BRM88_04375 5767a5caacf7ff01908e41012d7cc9ff 96 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 1 95 16.146 T 31-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 BRM88_14140 a600609bf13a01642144c6b7b90bbc3f 299 SUPERFAMILY SSF51261 70 295 5.1E-54 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_14140 a600609bf13a01642144c6b7b90bbc3f 299 Pfam PF01551 Peptidase family M23 196 291 1.2E-28 T 31-10-2018 IPR016047 Peptidase M23 BRM88_14140 a600609bf13a01642144c6b7b90bbc3f 299 Gene3D G3DSA:2.70.70.10 142 299 2.5E-47 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_13525 de1be050650064fd9dbde3c1fe5e0fac 132 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BRM88_13525 de1be050650064fd9dbde3c1fe5e0fac 132 PIRSF PIRSF002889 1 132 2.7E-34 T 31-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BRM88_13525 de1be050650064fd9dbde3c1fe5e0fac 132 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 129 6.1E-29 T 31-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BRM88_13525 de1be050650064fd9dbde3c1fe5e0fac 132 Pfam PF00460 Flagella basal body rod protein 11 39 6.8E-8 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 SUPERFAMILY SSF56935 27 403 7.53E-37 T 31-10-2018 BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 Gene3D G3DSA:2.170.130.10 24 164 4.2E-18 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 SUPERFAMILY SSF56935 400 1013 5.09E-50 T 31-10-2018 BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 Pfam PF00593 TonB dependent receptor 461 1012 4.5E-39 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 32 1013 6.6E-255 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_15030 91c88a4992a86c6d5a9dd623fc8cb06d 1013 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 159 7.2E-16 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_22495 ea6cd559752bd55673efd6088acfccfc 336 SUPERFAMILY SSF51735 1 325 1.94E-66 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_22495 ea6cd559752bd55673efd6088acfccfc 336 Gene3D G3DSA:3.40.50.720 1 330 4.2E-75 T 31-10-2018 BRM88_22495 ea6cd559752bd55673efd6088acfccfc 336 Pfam PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family 4 252 5.7E-49 T 31-10-2018 IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase GO:0003854|GO:0006694|GO:0016616|GO:0055114 BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 18 393 3.2E-159 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 Gene3D G3DSA:3.90.1150.10 262 397 6.6E-61 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 SUPERFAMILY SSF53383 20 393 8.43E-125 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 PIRSF PIRSF001434 3 396 9.6E-149 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_03890 9cb7c84b0f53e8ee15b9d784b6d6a4ff 397 Gene3D G3DSA:3.40.640.10 15 261 1.5E-99 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 SUPERFAMILY SSF53738 151 253 4.71E-28 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 91 100 - T 31-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Gene3D G3DSA:3.30.310.50 366 448 5.0E-27 T 31-10-2018 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 SUPERFAMILY SSF55957 364 447 4.53E-19 T 31-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Gene3D G3DSA:3.40.120.10 169 246 4.4E-29 T 31-10-2018 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Gene3D G3DSA:3.40.120.10 247 365 4.3E-34 T 31-10-2018 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Gene3D G3DSA:3.40.120.10 1 147 9.5E-58 T 31-10-2018 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 SUPERFAMILY SSF53738 255 359 3.92E-31 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 5 131 2.4E-34 T 31-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 151 250 5.6E-22 T 31-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 255 365 4.2E-24 T 31-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 446 1.1E-10 T 31-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 SUPERFAMILY SSF53738 4 174 1.02E-34 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 201 214 2.2E-28 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 230 245 2.2E-28 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 167 186 2.2E-28 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_03995 f7ef67501af1550c7d7fb3dab590b31c 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 90 104 2.2E-28 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Gene3D G3DSA:3.30.300.30 517 646 4.6E-31 T 31-10-2018 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Gene3D G3DSA:3.40.50.12780 48 514 6.0E-101 T 31-10-2018 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 ProSitePatterns PS00455 Putative AMP-binding domain signature. 260 271 - T 31-10-2018 IPR020845 AMP-binding, conserved site BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 8.1E-21 T 31-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Pfam PF00501 AMP-binding enzyme 81 521 6.8E-92 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 SUPERFAMILY SSF56801 15 641 3.92E-182 T 31-10-2018 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 644 52.653 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 19 642 0.0 T 31-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 BRM88_24140 98c2d25794d94a4691a8248e54d81343 647 Pfam PF13193 AMP-binding enzyme C-terminal domain 530 608 2.9E-25 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Gene3D G3DSA:2.120.10.30 464 693 9.4E-16 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 SUPERFAMILY SSF82171 223 545 5.69E-34 T 31-10-2018 BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Gene3D G3DSA:1.10.10.10 3 111 5.0E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Gene3D G3DSA:2.120.10.30 220 458 5.3E-36 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 SUPERFAMILY SSF46894 2 103 5.95E-17 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Pfam PF07676 WD40-like Beta Propeller Repeat 376 397 0.002 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Pfam PF07676 WD40-like Beta Propeller Repeat 273 304 1.6E-4 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Pfam PF07676 WD40-like Beta Propeller Repeat 225 248 0.079 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Pfam PF07676 WD40-like Beta Propeller Repeat 497 532 3.1E-8 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 102 3.3E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 SMART SM00862 26 102 2.2E-16 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_04795 9cc50325a19aa240c283546f0db2a67b 783 SUPERFAMILY SSF69304 464 752 3.14E-14 T 31-10-2018 BRM88_14320 ace8d882624b50a82fc6a988eaf80ae1 291 Pfam PF00135 Carboxylesterase family 54 157 5.3E-13 T 31-10-2018 IPR002018 Carboxylesterase, type B BRM88_14320 ace8d882624b50a82fc6a988eaf80ae1 291 SUPERFAMILY SSF53474 32 283 4.3E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14320 ace8d882624b50a82fc6a988eaf80ae1 291 Gene3D G3DSA:3.40.50.1820 32 280 9.3E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_06080 4dde47ac070ade192ae6ea49d17de800 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 223 2.9E-20 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_06080 4dde47ac070ade192ae6ea49d17de800 230 Gene3D G3DSA:1.10.3720.10 2 225 3.2E-58 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_06080 4dde47ac070ade192ae6ea49d17de800 230 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 223 4.0E-65 T 31-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 BRM88_06080 4dde47ac070ade192ae6ea49d17de800 230 SUPERFAMILY SSF161098 5 221 1.24E-48 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_03425 f8e63c1473160b871099fc9264cc56a7 385 Pfam PF00691 OmpA family 173 256 3.8E-12 T 31-10-2018 IPR006665 OmpA-like domain BRM88_03425 f8e63c1473160b871099fc9264cc56a7 385 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 14 64 2.4E-19 T 31-10-2018 IPR025713 Motility protein B, N-terminal domain BRM88_03425 f8e63c1473160b871099fc9264cc56a7 385 Gene3D G3DSA:3.30.1330.60 120 300 8.3E-52 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_03425 f8e63c1473160b871099fc9264cc56a7 385 SUPERFAMILY SSF103088 164 276 9.81E-20 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_04625 544766051f67d7dce64b773e7f24756b 128 SMART SM00448 2 115 2.9E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_04625 544766051f67d7dce64b773e7f24756b 128 Pfam PF00072 Response regulator receiver domain 4 114 1.1E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_04625 544766051f67d7dce64b773e7f24756b 128 SUPERFAMILY SSF52172 1 121 1.57E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_04625 544766051f67d7dce64b773e7f24756b 128 Gene3D G3DSA:3.40.50.12740 1 128 2.2E-42 T 31-10-2018 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 80 99 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 207 227 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 119 138 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 99 119 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 228 249 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 252 277 2.9E-60 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 178 190 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 268 278 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 200 212 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 78 87 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 138 150 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 150 164 8.7E-17 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 207 222 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 255 267 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 82 278 1.1E-75 T 31-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BRM88_13740 cc771938609642d42d12438dc658ca88 281 Pfam PF00813 FliP family 82 274 1.6E-71 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_19405 c7a216a2dce6ce525131d8a848ac8bdb 779 Pfam PF07793 Protein of unknown function (DUF1631) 11 770 3.4E-205 T 31-10-2018 IPR012434 Protein of unknown function DUF1631 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 Gene3D G3DSA:3.40.30.60 367 510 1.4E-53 T 31-10-2018 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 Gene3D G3DSA:1.10.8.540 511 599 2.7E-23 T 31-10-2018 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PIRSF PIRSF005419 8 697 4.8E-234 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 Gene3D G3DSA:1.10.490.80 602 696 9.8E-12 T 31-10-2018 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 37 50 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 141 157 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 160 178 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 74 93 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 190 207 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 241 255 4.7E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 Pfam PF00771 FHIPEP family 30 687 2.9E-256 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_13780 9385a57ef4fa2f93005feadd9557391c 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 23 696 5.8E-251 T 31-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 PIRSF PIRSF001553 1 291 6.8E-131 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 9.0E-37 T 31-10-2018 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 9.0E-37 T 31-10-2018 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 9.0E-37 T 31-10-2018 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 9.0E-37 T 31-10-2018 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 290 43.42 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 SMART SM00881 4 100 5.0E-38 T 31-10-2018 IPR003781 CoA-binding GO:0048037 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 Gene3D G3DSA:3.40.50.261 126 291 3.6E-72 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 SUPERFAMILY SSF51735 1 124 1.02E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 Pfam PF00549 CoA-ligase 153 273 6.8E-19 T 31-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 154 183 - T 31-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 Gene3D G3DSA:3.40.50.720 2 125 5.3E-52 T 31-10-2018 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 Pfam PF02629 CoA binding domain 6 99 7.8E-32 T 31-10-2018 IPR003781 CoA-binding GO:0048037 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 238 251 - T 31-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 289 4.0E-139 T 31-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08235 6daa88f5faa9e6907725148b3f59572f 291 SUPERFAMILY SSF52210 125 290 3.53E-56 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_22710 46ef3c37d27f8fd3c09d36f6c20a925e 289 PIRSF PIRSF028477 11 287 5.0E-105 T 31-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 BRM88_22710 46ef3c37d27f8fd3c09d36f6c20a925e 289 Pfam PF09916 Uncharacterized protein conserved in bacteria (DUF2145) 65 264 4.7E-71 T 31-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 BRM88_10020 95ddeb26db49805cba9cab5acd9b925a 319 Pfam PF07103 Protein of unknown function (DUF1365) 58 312 1.7E-73 T 31-10-2018 IPR010775 Protein of unknown function DUF1365 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 8.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 PRINTS PR01011 Glutathione peroxidase family signature 58 74 8.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 PRINTS PR01011 Glutathione peroxidase family signature 23 40 8.0E-19 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 PIRSF PIRSF000303 1 180 3.4E-59 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 Pfam PF00255 Glutathione peroxidase 5 111 1.7E-35 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 SUPERFAMILY SSF52833 3 179 1.12E-55 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 Gene3D G3DSA:3.40.30.10 1 180 2.9E-58 T 31-10-2018 BRM88_24320 3e80fedb402cf1ae87c6e442839eb1de 181 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 BRM88_05250 e51a4b8b4e1b29ae4a6db23843d9ca8a 234 SUPERFAMILY SSF81606 2 232 2.75E-61 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_05250 e51a4b8b4e1b29ae4a6db23843d9ca8a 234 SMART SM00331 8 233 2.3E-27 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_05250 e51a4b8b4e1b29ae4a6db23843d9ca8a 234 Gene3D G3DSA:3.60.40.10 1 233 6.7E-62 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_05250 e51a4b8b4e1b29ae4a6db23843d9ca8a 234 Pfam PF13672 Protein phosphatase 2C 17 193 1.0E-12 T 31-10-2018 BRM88_05250 e51a4b8b4e1b29ae4a6db23843d9ca8a 234 SMART SM00332 3 231 2.2E-16 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 1.2E-113 T 31-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 259 1.1E-23 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 7.8E-31 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 8.2E-49 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 Pfam PF00460 Flagella basal body rod protein 5 35 8.4E-14 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BRM88_13555 3c4e42b3991c270d41a32bb2c8658bc2 261 SUPERFAMILY SSF117143 93 222 4.45E-34 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BRM88_08330 60c225165ab0b270e4b9324403436359 304 SUPERFAMILY SSF55729 136 297 3.18E-21 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_08330 60c225165ab0b270e4b9324403436359 304 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 72 142 7.7E-17 T 31-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 BRM88_08330 60c225165ab0b270e4b9324403436359 304 PIRSF PIRSF037208 56 303 3.0E-86 T 31-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 BRM88_08330 60c225165ab0b270e4b9324403436359 304 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 162 288 4.3E-33 T 31-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 BRM88_08330 60c225165ab0b270e4b9324403436359 304 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 62 295 38.027 T 31-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 BRM88_19285 960fc6dc7542749d7ada6ad17db13a34 260 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 4 227 4.0E-94 T 31-10-2018 IPR022488 Polyphosphate kinase-2-related BRM88_19285 960fc6dc7542749d7ada6ad17db13a34 260 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 4 226 5.9E-105 T 31-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 BRM88_19285 960fc6dc7542749d7ada6ad17db13a34 260 SUPERFAMILY SSF52540 35 222 4.96E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19285 960fc6dc7542749d7ada6ad17db13a34 260 PIRSF PIRSF028756 1 253 5.3E-117 T 31-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 BRM88_19285 960fc6dc7542749d7ada6ad17db13a34 260 Gene3D G3DSA:3.40.50.300 1 235 4.9E-87 T 31-10-2018 BRM88_00110 84b360470d295e02fb33fccde8f4da26 326 Pfam PF05598 Transposase domain (DUF772) 50 122 1.5E-15 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00110 84b360470d295e02fb33fccde8f4da26 326 Pfam PF01609 Transposase DDE domain 135 307 1.2E-26 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07910 d6f9e61de980583ec98e00edc6dd5020 318 SUPERFAMILY SSF53098 165 307 2.15E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_07910 d6f9e61de980583ec98e00edc6dd5020 318 Pfam PF00665 Integrase core domain 172 266 3.3E-8 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_07910 d6f9e61de980583ec98e00edc6dd5020 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_07910 d6f9e61de980583ec98e00edc6dd5020 318 Gene3D G3DSA:3.30.420.10 156 315 2.9E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 Gene3D G3DSA:1.20.1370.20 453 549 1.4E-28 T 31-10-2018 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 Pfam PF00199 Catalase 42 427 1.0E-178 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PIRSF PIRSF038927 13 699 2.9E-294 T 31-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 139 156 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 327 354 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 55 78 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 158 176 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 118 136 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 PRINTS PR00067 Catalase signature 359 385 1.2E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 Pfam PF06628 Catalase-related immune-responsive 456 518 6.9E-21 T 31-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 Gene3D G3DSA:3.40.50.880 550 699 3.4E-28 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 SUPERFAMILY SSF56634 35 529 1.57E-215 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 ProSitePatterns PS00438 Catalase proximal active site signature. 78 94 - T 31-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 Gene3D G3DSA:2.40.180.10 2 448 3.5E-201 T 31-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 372 380 - T 31-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 SUPERFAMILY SSF52317 553 671 7.56E-13 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_18195 a0c444647d894cea30866c7a29537f4d 701 SMART SM01060 42 430 6.1E-276 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_19350 4694da02d075f755f44381101b2f32be 184 Gene3D G3DSA:3.30.300.130 75 183 1.9E-33 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BRM88_19350 4694da02d075f755f44381101b2f32be 184 TIGRFAM TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT 9 183 7.7E-82 T 31-10-2018 IPR017776 FeS assembly SUF system protein SufT, putative BRM88_19350 4694da02d075f755f44381101b2f32be 184 SUPERFAMILY SSF117916 82 182 2.75E-26 T 31-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BRM88_19350 4694da02d075f755f44381101b2f32be 184 Pfam PF01883 Iron-sulfur cluster assembly protein 86 160 1.9E-11 T 31-10-2018 IPR002744 MIP18 family-like BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SUPERFAMILY SSF48452 11 372 5.43E-30 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 Gene3D G3DSA:1.25.40.10 141 442 9.1E-29 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 Pfam PF13432 Tetratricopeptide repeat 38 97 0.0094 T 31-10-2018 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 Pfam PF13432 Tetratricopeptide repeat 209 270 3.2E-7 T 31-10-2018 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 Pfam PF13432 Tetratricopeptide repeat 145 200 2.1E-4 T 31-10-2018 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 100 133 43.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 134 167 140.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 237 270 39.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 168 201 0.065 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 66 99 81.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 SMART SM00028 32 65 52.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_23875 62130b49ef6bc7679346f42b462a34b4 690 Gene3D G3DSA:1.25.40.10 4 139 1.5E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_16580 c9a79d25e16723870054b236bb23dc04 189 Gene3D G3DSA:3.90.550.10 2 186 7.0E-39 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_16580 c9a79d25e16723870054b236bb23dc04 189 Pfam PF12804 MobA-like NTP transferase domain 9 151 7.7E-28 T 31-10-2018 IPR025877 MobA-like NTP transferase BRM88_16580 c9a79d25e16723870054b236bb23dc04 189 SUPERFAMILY SSF53448 7 180 2.7E-26 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_23010 357642babcb4f8513a7040945a965221 292 Gene3D G3DSA:3.40.50.720 9 274 3.5E-78 T 31-10-2018 BRM88_23010 357642babcb4f8513a7040945a965221 292 Gene3D G3DSA:3.90.25.10 143 276 3.5E-78 T 31-10-2018 BRM88_23010 357642babcb4f8513a7040945a965221 292 Pfam PF05368 NmrA-like family 8 227 5.6E-17 T 31-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 BRM88_23010 357642babcb4f8513a7040945a965221 292 SUPERFAMILY SSF51735 7 256 8.18E-54 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 330 545 1.2E-49 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 SUPERFAMILY SSF53187 329 548 7.85E-53 T 31-10-2018 BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 Pfam PF11741 AMIN domain 45 123 4.5E-13 T 31-10-2018 IPR021731 AMIN domain BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 Gene3D G3DSA:2.60.40.3500 26 135 1.0E-15 T 31-10-2018 BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 SMART SM00646 390 545 9.1E-65 T 31-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BRM88_14395 6f68fdb2524cb585f148cc3073b0da13 577 Gene3D G3DSA:3.40.630.40 317 553 6.4E-76 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 Gene3D G3DSA:3.30.420.40 159 322 2.1E-131 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 SUPERFAMILY SSF53067 155 340 2.5E-48 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 Pfam PF06723 MreB/Mbl protein 11 339 3.4E-151 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 340 5.2E-161 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 Gene3D G3DSA:3.30.420.40 14 332 2.1E-131 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 Gene3D G3DSA:3.90.640.10 191 264 2.1E-131 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 SUPERFAMILY SSF53067 9 153 5.12E-38 T 31-10-2018 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 73 96 5.6E-62 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 305 331 5.6E-62 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 192 212 5.6E-62 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 53 71 5.6E-62 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 137 156 5.6E-62 T 31-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BRM88_21200 78b904b3822f6099845cb85389d923ec 348 SMART SM00268 10 345 0.0034 T 31-10-2018 IPR004000 Actin family BRM88_12210 d7fd0b5a4cd32b4afcfe95f2bd494d78 131 SUPERFAMILY SSF81343 4 124 2.01E-29 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12210 d7fd0b5a4cd32b4afcfe95f2bd494d78 131 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 5 122 6.5E-34 T 31-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12210 d7fd0b5a4cd32b4afcfe95f2bd494d78 131 PIRSF PIRSF000178 1 125 3.2E-35 T 31-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12210 d7fd0b5a4cd32b4afcfe95f2bd494d78 131 Gene3D G3DSA:1.20.1300.10 1 125 1.2E-32 T 31-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12210 d7fd0b5a4cd32b4afcfe95f2bd494d78 131 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 4 118 1.8E-21 T 31-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_03365 c6374eef70a35bb9d4d4e21423135c16 545 PRINTS PR01084 Na+/H+ exchanger signature 119 129 4.2E-5 T 31-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 BRM88_03365 c6374eef70a35bb9d4d4e21423135c16 545 PRINTS PR01084 Na+/H+ exchanger signature 69 83 4.2E-5 T 31-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 BRM88_03365 c6374eef70a35bb9d4d4e21423135c16 545 PRINTS PR01084 Na+/H+ exchanger signature 55 66 4.2E-5 T 31-10-2018 IPR004709 Na+/H+ exchanger GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 Reactome: R-HSA-425986 BRM88_03365 c6374eef70a35bb9d4d4e21423135c16 545 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 540 2.4E-123 T 31-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 BRM88_03365 c6374eef70a35bb9d4d4e21423135c16 545 Pfam PF00999 Sodium/hydrogen exchanger family 11 419 9.5E-66 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 Gene3D G3DSA:1.10.287.950 1 176 1.1E-57 T 31-10-2018 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 2 141 8.3E-49 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 SUPERFAMILY SSF58104 3 175 1.31E-53 T 31-10-2018 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 54 83 2.6E-40 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 25 52 2.6E-40 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 102 131 2.6E-40 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15125 2c60ab4cede4e10ba8ba549922b21e45 229 SMART SM00283 1 174 1.1E-35 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_03570 43c31d7ad64b666dbf3a85293f12e768 231 SUPERFAMILY SSF161098 20 220 1.18E-40 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_03570 43c31d7ad64b666dbf3a85293f12e768 231 Gene3D G3DSA:1.10.3720.10 23 228 3.4E-42 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_03570 43c31d7ad64b666dbf3a85293f12e768 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 56 231 7.9E-21 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_21755 49d250229611194134b1dd028e2cf487 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21755 49d250229611194134b1dd028e2cf487 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21755 49d250229611194134b1dd028e2cf487 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 Pfam PF02321 Outer membrane efflux protein 78 266 1.7E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 Pfam PF02321 Outer membrane efflux protein 294 477 2.5E-22 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 Gene3D G3DSA:2.20.200.10 115 368 4.1E-112 T 31-10-2018 BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 SUPERFAMILY SSF56954 3 481 1.7E-95 T 31-10-2018 BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 Gene3D G3DSA:1.20.1600.10 68 479 4.1E-112 T 31-10-2018 BRM88_12600 7ec33d377daa02a8eee543c63dbecec4 494 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 479 2.7E-129 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 Pfam PF01050 Mannose-6-phosphate isomerase 312 462 1.6E-73 T 31-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5 466 1.8E-228 T 31-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 Gene3D G3DSA:3.90.550.10 3 345 1.1E-121 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 Gene3D G3DSA:2.60.120.10 346 451 3.6E-18 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 SUPERFAMILY SSF53448 5 279 9.86E-74 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 Pfam PF00483 Nucleotidyl transferase 6 285 2.8E-77 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BRM88_03990 459ce0217a49d49b9e562033dd5f42fd 467 SUPERFAMILY SSF51182 183 467 1.87E-88 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_10810 63817344fba5555da2239278d730df03 382 PIRSF PIRSF016578 215 369 6.7E-11 T 31-10-2018 BRM88_10810 63817344fba5555da2239278d730df03 382 PIRSF PIRSF016578 126 196 0.0093 T 31-10-2018 BRM88_10810 63817344fba5555da2239278d730df03 382 PIRSF PIRSF016578 4 115 2.5E-7 T 31-10-2018 BRM88_10810 63817344fba5555da2239278d730df03 382 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 377 2.9E-48 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 SUPERFAMILY SSF56645 2 242 1.44E-72 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 SUPERFAMILY SSF47203 229 380 2.26E-56 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.6E-26 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 Gene3D G3DSA:1.10.540.10 1 120 6.5E-37 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 Gene3D G3DSA:1.20.140.10 235 377 3.9E-52 T 31-10-2018 BRM88_10810 63817344fba5555da2239278d730df03 382 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 Gene3D G3DSA:2.40.110.10 121 234 1.7E-37 T 31-10-2018 BRM88_10810 63817344fba5555da2239278d730df03 382 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_10810 63817344fba5555da2239278d730df03 382 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 8.8E-30 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 108 115 - T 31-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 9 232 40.413 T 31-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 233 3.6E-62 T 31-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 SUPERFAMILY SSF53448 10 231 4.73E-53 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 Gene3D G3DSA:3.90.550.10 2 236 6.0E-66 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_15790 3dd9418fabe76e6388d7db3b7cce6af7 272 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 231 9.7E-71 T 31-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Gene3D G3DSA:3.10.50.40 284 425 1.5E-33 T 31-10-2018 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Pfam PF09312 SurA N-terminal domain 31 148 6.1E-46 T 31-10-2018 IPR015391 SurA N-terminal BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 SUPERFAMILY SSF54534 176 281 1.05E-24 T 31-10-2018 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 SUPERFAMILY SSF109998 31 203 2.88E-40 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 SUPERFAMILY SSF54534 290 390 1.24E-27 T 31-10-2018 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Gene3D G3DSA:1.10.4030.30 32 280 1.0E-67 T 31-10-2018 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Hamap MF_01183 Chaperone SurA [surA]. 9 434 31.838 T 31-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Pfam PF00639 PPIC-type PPIASE domain 181 275 2.4E-15 T 31-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Pfam PF13616 PPIC-type PPIASE domain 284 385 3.3E-25 T 31-10-2018 BRM88_19990 9454ee9906c5493759a8af3839eb0fb4 463 Gene3D G3DSA:3.10.50.40 175 278 1.0E-67 T 31-10-2018 BRM88_20615 ec9517e958dd582ffa1054b72a3d4a90 110 Pfam PF14329 Domain of unknown function (DUF4386) 16 95 3.6E-15 T 31-10-2018 IPR025495 Protein of unknown function DUF4386 BRM88_20040 dfe6385dba6229b6d5c545ac4d1033be 163 Pfam PF04536 TPM domain 23 137 6.5E-13 T 31-10-2018 IPR007621 TPM domain BRM88_20040 dfe6385dba6229b6d5c545ac4d1033be 163 Gene3D G3DSA:3.10.310.50 11 159 1.5E-44 T 31-10-2018 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 13 389 7.8E-178 T 31-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 Gene3D G3DSA:3.40.640.10 11 255 1.0E-82 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 SUPERFAMILY SSF53383 19 389 2.45E-117 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 PIRSF PIRSF001434 3 392 1.1E-132 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 Gene3D G3DSA:3.90.1150.10 256 393 2.1E-52 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 388 2.6E-134 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_09510 06db98ca0561bb064c330a273bdd5393 405 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_03305 856087f43ba9f2d968ff31eff69a1228 231 Pfam PF00535 Glycosyl transferase family 2 3 124 7.5E-16 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_03305 856087f43ba9f2d968ff31eff69a1228 231 Gene3D G3DSA:3.90.550.10 1 222 4.2E-32 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03305 856087f43ba9f2d968ff31eff69a1228 231 SUPERFAMILY SSF53448 3 211 1.78E-34 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 SUPERFAMILY SSF55979 127 244 3.14E-29 T 31-10-2018 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 PIRSF PIRSF000804 1 366 1.8E-121 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 247 365 1.6E-34 T 31-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Gene3D G3DSA:3.10.150.10 125 247 2.2E-38 T 31-10-2018 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 5.0E-106 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Gene3D G3DSA:3.10.150.10 248 366 4.5E-38 T 31-10-2018 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 6.5E-36 T 31-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 SUPERFAMILY SSF55979 1 116 2.57E-26 T 31-10-2018 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 118 1.5E-37 T 31-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 SMART SM00480 17 362 9.3E-138 T 31-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 SUPERFAMILY SSF55979 246 366 2.9E-34 T 31-10-2018 BRM88_00010 ebdfc68b05062860610f10e48418f9da 366 Gene3D G3DSA:3.10.150.10 1 122 2.4E-42 T 31-10-2018 BRM88_13240 9349e373029796fbbe68befc151281a7 439 Pfam PF13546 DDE superfamily endonuclease 18 291 2.9E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_13240 9349e373029796fbbe68befc151281a7 439 SUPERFAMILY SSF53098 18 403 3.03E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_18795 edb65ced531f85e6171d526343a4c597 400 Gene3D G3DSA:3.40.50.20 2 123 2.6E-51 T 31-10-2018 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 SUPERFAMILY SSF56059 114 314 2.65E-58 T 31-10-2018 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 SUPERFAMILY SSF52440 3 113 7.48E-33 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_18795 edb65ced531f85e6171d526343a4c597 400 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 397 51.353 T 31-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 Pfam PF02222 ATP-grasp domain 124 295 2.5E-55 T 31-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BRM88_18795 edb65ced531f85e6171d526343a4c597 400 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 396 5.7E-175 T 31-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 Gene3D G3DSA:3.30.1490.20 124 197 3.7E-31 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 Gene3D G3DSA:3.30.470.20 198 399 2.6E-57 T 31-10-2018 BRM88_18795 edb65ced531f85e6171d526343a4c597 400 SUPERFAMILY SSF51246 325 396 1.4E-14 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 Gene3D G3DSA:1.10.287.130 119 235 3.2E-21 T 31-10-2018 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SUPERFAMILY SSF158472 123 172 8.89E-6 T 31-10-2018 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SMART SM00387 285 397 2.1E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 Pfam PF00512 His Kinase A (phospho-acceptor) domain 178 236 3.0E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SMART SM00304 121 175 1.4E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SMART SM00388 176 240 3.1E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 286 395 4.0E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SUPERFAMILY SSF55874 230 395 4.58E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 Pfam PF00672 HAMP domain 123 172 9.7E-7 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 SUPERFAMILY SSF47384 159 241 7.06E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 336 1.4E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 375 1.4E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 394 1.4E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 350 1.4E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08055 705787ee00bca75738dcf33ce4bb4aeb 397 Gene3D G3DSA:3.30.565.10 245 397 4.8E-32 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 1273 1636 2.92E-23 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF103515 2287 2594 2.35E-52 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_12615 cee274ffae510563a653827512599a2f 2594 Gene3D G3DSA:2.40.128.130 2279 2594 6.0E-51 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 370 611 3.77E-19 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1572 1601 8.9E-5 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 647 675 2.6E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1937 1963 1.4E-5 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1289 1317 0.0012 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1809 1835 2.0E-4 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 561 590 1.3E-4 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 2000 2027 1.5E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 740 766 0.025 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1744 1772 4.0E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1658 1687 2.3E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1023 1051 2.0E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 393 420 2.2E-5 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1194 1222 3.7E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1108 1137 5.6E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 1872 1900 4.1E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 476 504 6.6E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 2064 2094 3.7E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 Pfam PF12951 Passenger-associated-transport-repeat 308 336 0.0099 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 859 1162 2.67E-17 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 SMART SM00869 2323 2584 3.6E-37 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1657 1687 3.2E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1193 1222 6.9E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1871 1900 6.8E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 2064 2095 2.3E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1999 2027 2.7E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1021 1052 3.3E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 647 676 1.7E-10 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1288 1319 6.9E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 393 421 3.2E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1572 1602 4.3E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 560 591 6.0E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1807 1835 1.7E-5 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 307 338 8.9E-5 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1743 1772 1.9E-6 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1935 1963 1.6E-7 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 474 505 1.2E-8 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 1912 2209 4.39E-25 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 19 367 1.95E-7 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 622 861 1.32E-14 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_12615 cee274ffae510563a653827512599a2f 2594 SUPERFAMILY SSF51126 1633 1965 1.82E-31 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_03860 845f2b1e142e919061545c91fde19417 208 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 206 2.4E-79 T 31-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 BRM88_03860 845f2b1e142e919061545c91fde19417 208 Gene3D G3DSA:3.40.30.10 1 71 1.9E-17 T 31-10-2018 BRM88_03860 845f2b1e142e919061545c91fde19417 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 71 1.6E-11 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_03860 845f2b1e142e919061545c91fde19417 208 SUPERFAMILY SSF47616 75 205 4.26E-29 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_03860 845f2b1e142e919061545c91fde19417 208 SUPERFAMILY SSF52833 5 95 8.24E-15 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_03860 845f2b1e142e919061545c91fde19417 208 Gene3D G3DSA:1.20.1050.10 78 208 2.4E-48 T 31-10-2018 BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 Gene3D G3DSA:3.40.50.720 1 260 9.6E-62 T 31-10-2018 BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 SUPERFAMILY SSF51735 7 255 1.26E-55 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 254 1.7E-35 T 31-10-2018 BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.3E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.3E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_01140 0a3a2ebdef09736149b0c802114b10a8 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.3E-5 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Pfam PF09397 Ftsk gamma domain 720 780 2.7E-27 T 31-10-2018 IPR018541 FtsK gamma domain BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 SUPERFAMILY SSF52540 366 679 6.91E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Gene3D G3DSA:1.10.10.10 722 784 9.5E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 SUPERFAMILY SSF46785 718 783 3.86E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 31 204 1.2E-39 T 31-10-2018 IPR025199 DNA translocase FtsK, 4TM region BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Gene3D G3DSA:3.40.50.300 391 693 7.8E-114 T 31-10-2018 BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 SMART SM00382 429 628 0.0072 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 SMART SM00843 718 783 1.7E-40 T 31-10-2018 IPR018541 FtsK gamma domain BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Gene3D G3DSA:3.30.980.40 286 390 1.4E-33 T 31-10-2018 BRM88_13415 7759ad26bcb7a3a28927b387c8c6ab51 786 Pfam PF01580 FtsK/SpoIIIE family 394 607 2.0E-64 T 31-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 Gene3D G3DSA:3.40.50.1240 2 249 7.9E-87 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 4 247 1.2E-121 T 31-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 2 229 44.662 T 31-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 PIRSF PIRSF000709 173 240 0.0038 T 31-10-2018 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 PIRSF PIRSF000709 1 115 6.4E-8 T 31-10-2018 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 SMART SM00855 4 190 5.8E-26 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 31-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 124 4.5E-29 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 140 209 4.8E-5 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_07595 c1d4736d6e0e7b63752cf6622cacc53a 249 SUPERFAMILY SSF53254 2 246 2.23E-78 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 26 149 2.0E-68 T 31-10-2018 BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 23 147 3.8E-19 T 31-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 Gene3D G3DSA:2.60.40.420 22 148 6.0E-42 T 31-10-2018 IPR008972 Cupredoxin BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 126 142 - T 31-10-2018 IPR028871 Blue (type 1) copper protein, binding site BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 TIGRFAM TIGR02695 azurin: azurin 24 147 7.5E-58 T 31-10-2018 IPR014068 Azurin BRM88_06240 8733e2ea4073003045c029bfe828b0b7 149 SUPERFAMILY SSF49503 23 146 3.07E-42 T 31-10-2018 IPR008972 Cupredoxin BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 Gene3D G3DSA:1.10.3370.10 13 434 1.6E-152 T 31-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 156 181 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 182 205 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 375 393 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 274 293 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 320 342 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PRINTS PR00303 Preprotein translocase SecY subunit signature 407 425 4.5E-88 T 31-10-2018 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 438 27.872 T 31-10-2018 IPR026593 Protein translocase subunit SecY BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 Pfam PF00344 SecY translocase 76 421 1.2E-108 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 SUPERFAMILY SSF103491 15 429 1.1E-121 T 31-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 434 3.8E-124 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 31-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 PIRSF PIRSF004557 14 446 6.5E-115 T 31-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19015 88b391f12be4c5d26076b3c30b4d43a4 454 ProSitePatterns PS00756 Protein secY signature 2. 175 192 - T 31-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.5E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 SUPERFAMILY SSF52172 3 125 3.27E-42 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 SUPERFAMILY SSF46894 127 225 2.01E-29 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 Pfam PF00072 Response regulator receiver domain 5 117 5.6E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 Gene3D G3DSA:3.40.50.2300 1 128 4.9E-39 T 31-10-2018 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 SMART SM00862 150 225 6.1E-28 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 2 226 3.9E-112 T 31-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 Gene3D G3DSA:1.10.10.10 129 228 5.1E-35 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19575 f63982ed1e72aac2a194730ea314fd55 229 SMART SM00448 3 116 1.4E-41 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09840 24a6131926283a39df8b03c83e6bab1f 57 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 52 20.7 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_09840 24a6131926283a39df8b03c83e6bab1f 57 PIRSF PIRSF036466 1 55 1.8E-21 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_09840 24a6131926283a39df8b03c83e6bab1f 57 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 1.3E-11 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SUPERFAMILY SSF52540 412 615 1.55E-58 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SUPERFAMILY SSF81767 227 364 1.7E-42 T 31-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 ProSitePatterns PS01312 SecA family signature. 496 511 - T 31-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SUPERFAMILY SSF52540 6 411 1.14E-85 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Gene3D G3DSA:1.10.3060.10 618 830 2.0E-70 T 31-10-2018 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SUPERFAMILY SSF81886 618 900 2.75E-79 T 31-10-2018 IPR036266 SecA, Wing/Scaffold superfamily BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 829 20.025 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 815 0.0 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Gene3D G3DSA:3.40.50.300 23 411 5.1E-178 T 31-10-2018 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Pfam PF01043 SecA preprotein cross-linking domain 233 354 7.3E-38 T 31-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Pfam PF02810 SEC-C motif 892 910 1.1E-10 T 31-10-2018 IPR004027 SEC-C motif BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Gene3D G3DSA:3.40.50.300 413 617 9.4E-88 T 31-10-2018 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 101 115 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 409 422 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 63 87 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 372 389 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 170 190 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 117 127 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 PRINTS PR00906 SecA protein signature 335 357 1.9E-71 T 31-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SMART SM00957 6 398 0.0 T 31-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Gene3D G3DSA:3.90.1440.10 229 364 5.1E-178 T 31-10-2018 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 SMART SM00958 228 354 5.3E-75 T 31-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Pfam PF07517 SecA DEAD-like domain 7 398 1.9E-133 T 31-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BRM88_20360 9e5f4a413e91615c7b94edfc97ff5598 912 Pfam PF07516 SecA Wing and Scaffold domain 615 826 7.0E-64 T 31-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BRM88_02510 2823809d005f93f78682c5fba1e5e623 113 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 26 98 4.0E-21 T 31-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_02510 2823809d005f93f78682c5fba1e5e623 113 SMART SM01259 26 99 7.4E-22 T 31-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_02510 2823809d005f93f78682c5fba1e5e623 113 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 21 104 9.0E-42 T 31-10-2018 IPR011499 Lipid A biosynthesis, N-terminal GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_02510 2823809d005f93f78682c5fba1e5e623 113 PIRSF PIRSF028440 3 113 5.8E-47 T 31-10-2018 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 PIRSF PIRSF000388 1 271 1.6E-94 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 Gene3D G3DSA:3.20.20.60 9 271 1.2E-102 T 31-10-2018 BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 15 269 1.4E-96 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 11 264 7.5E-102 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 40.496 T 31-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BRM88_12530 83f5f60b242b4e1ebd02700405e2a53c 271 SUPERFAMILY SSF51621 10 269 3.23E-97 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 SUPERFAMILY SSF52283 1 135 9.14E-21 T 31-10-2018 BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 320 1.5E-14 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 SUPERFAMILY SSF51735 106 289 3.65E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 Gene3D G3DSA:3.40.50.720 2 313 1.4E-104 T 31-10-2018 BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 9.5E-48 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BRM88_24365 5c746e6550f0fc16df257dc410c17691 330 Gene3D G3DSA:3.40.50.720 104 305 1.4E-104 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 47 62 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BRM88_05685 caab3be9787e1e837110f470b48023f2 457 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 316 339 - T 31-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BRM88_05685 caab3be9787e1e837110f470b48023f2 457 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 13 449 37.339 T 31-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 SUPERFAMILY SSF118215 20 423 6.28E-114 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 85 110 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 166 188 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 313 339 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 348 367 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 PRINTS PR00173 Glutamate-aspartate symporter signature 213 232 1.3E-27 T 31-10-2018 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 Pfam PF00375 Sodium:dicarboxylate symporter family 20 422 8.8E-101 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BRM88_05685 caab3be9787e1e837110f470b48023f2 457 Gene3D G3DSA:1.10.3860.10 11 435 1.0E-116 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 Gene3D G3DSA:3.40.50.720 259 588 9.2E-107 T 31-10-2018 BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 Pfam PF13727 CoA-binding domain 45 219 1.5E-13 T 31-10-2018 BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 SUPERFAMILY SSF51735 262 526 8.57E-58 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 SUPERFAMILY SSF53335 89 309 1.06E-11 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 Pfam PF02719 Polysaccharide biosynthesis protein 264 546 2.2E-111 T 31-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 262 431 0.002 T 31-10-2018 BRM88_11390 4ea3863bdf3c7d21385266ef7878c1d5 612 Gene3D G3DSA:3.40.50.720 122 245 8.3E-29 T 31-10-2018 BRM88_15350 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_15350 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_07755 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_07755 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_15925 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_15925 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_00715 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_00715 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_12045 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_12045 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_20830 f2435a47a617bc75ad1d3005c3ccf5e1 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_20830 f2435a47a617bc75ad1d3005c3ccf5e1 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 97 108 - T 31-10-2018 IPR018215 ClpP, Ser active site BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 Gene3D G3DSA:3.90.226.10 2 203 1.4E-83 T 31-10-2018 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 6.0E-106 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 44.124 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 4.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 4.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 4.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 4.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 4.0E-52 T 31-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 Pfam PF00574 Clp protease 19 199 5.9E-87 T 31-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 119 132 - T 31-10-2018 IPR033135 ClpP, histidine active site BRM88_05180 ac86f1e142199991f71f6052ec364f9b 208 SUPERFAMILY SSF52096 10 199 1.03E-72 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 SUPERFAMILY SSF52540 3 571 2.5E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 ProSitePatterns PS00211 ABC transporters family signature. 831 845 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:1.10.8.280 289 405 1.1E-242 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:3.40.50.300 618 937 2.8E-139 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 ProSitePatterns PS00211 ABC transporters family signature. 489 503 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:3.30.190.20 132 241 1.1E-242 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 926 0.0 T 31-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:3.40.50.300 8 597 1.1E-242 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:1.20.1580.10 92 494 1.1E-242 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Gene3D G3DSA:1.20.1580.10 693 831 2.8E-139 T 31-10-2018 BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 SUPERFAMILY SSF52540 616 915 1.61E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08380 4b666980464cc0894bbdb8c02f3f3d0b 988 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 941 22.525 T 31-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 SUPERFAMILY SSF53244 314 450 5.36E-33 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Pfam PF01225 Mur ligase family, catalytic domain 4 98 2.3E-14 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 387 1.1E-10 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Gene3D G3DSA:3.90.190.20 317 452 9.2E-28 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Gene3D G3DSA:3.40.1190.10 93 313 1.5E-59 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 SUPERFAMILY SSF51984 2 90 3.27E-18 T 31-10-2018 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 2 452 55.609 T 31-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3 451 3.4E-186 T 31-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Pfam PF08245 Mur ligase middle domain 109 294 2.3E-24 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 Gene3D G3DSA:3.40.50.720 1 91 3.9E-30 T 31-10-2018 BRM88_04870 8896532b5cb1bc116bbe35e599676080 452 SUPERFAMILY SSF53623 97 312 7.33E-53 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Gene3D G3DSA:2.60.260.20 115 246 3.4E-37 T 31-10-2018 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 370 39.548 T 31-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 PRINTS PR00625 DnaJ domain signature 7 25 7.1E-29 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 PRINTS PR00625 DnaJ domain signature 42 62 7.1E-29 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 PRINTS PR00625 DnaJ domain signature 25 40 7.1E-29 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 PRINTS PR00625 DnaJ domain signature 62 81 7.1E-29 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 SUPERFAMILY SSF46565 1 105 1.02E-33 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Pfam PF01556 DnaJ C terminal domain 120 330 4.1E-40 T 31-10-2018 IPR002939 Chaperone DnaJ, C-terminal BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Pfam PF00684 DnaJ central domain 145 204 2.1E-13 T 31-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Gene3D G3DSA:2.10.230.10 145 204 3.4E-37 T 31-10-2018 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 SMART SM00271 4 62 6.8E-31 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Pfam PF00226 DnaJ domain 5 67 3.4E-26 T 31-10-2018 IPR001623 DnaJ domain BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 SUPERFAMILY SSF57938 132 208 2.49E-20 T 31-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 SUPERFAMILY SSF49493 256 341 7.72E-20 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 SUPERFAMILY SSF49493 112 254 6.54E-18 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 346 1.4E-126 T 31-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Gene3D G3DSA:1.10.287.110 1 114 3.5E-33 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_10565 d88f274c08dd835d41ebc35cf67c6981 376 Gene3D G3DSA:2.60.260.20 251 360 1.6E-27 T 31-10-2018 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Pfam PF02151 UvrB/uvrC motif 212 240 3.9E-8 T 31-10-2018 IPR001943 UVR domain GO:0005515 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Pfam PF01541 GIY-YIG catalytic domain 23 97 5.8E-7 T 31-10-2018 IPR000305 GIY-YIG endonuclease BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Gene3D G3DSA:1.10.150.20 551 605 1.2E-19 T 31-10-2018 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SMART SM00278 584 603 230.0 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SMART SM00278 552 571 1.2 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 16 584 4.0E-177 T 31-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SUPERFAMILY SSF47781 519 605 5.72E-19 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SMART SM00465 21 102 1.8E-15 T 31-10-2018 IPR000305 GIY-YIG endonuclease BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Gene3D G3DSA:3.30.420.340 375 548 3.8E-48 T 31-10-2018 IPR038476 UvrC homology region 2 superfamily BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Gene3D G3DSA:3.40.1440.10 10 106 1.3E-29 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 384 538 6.2E-50 T 31-10-2018 IPR001162 UvrC family homology region BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SUPERFAMILY SSF82771 21 104 2.09E-17 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 SUPERFAMILY SSF46600 193 246 3.14E-12 T 31-10-2018 IPR036876 UVR domain superfamily BRM88_12110 9fa2f6864072f84b04ff6828614b9da2 618 Hamap MF_00203 UvrABC system protein C [uvrC]. 8 603 26.866 T 31-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 SUPERFAMILY SSF53850 133 317 2.61E-53 T 31-10-2018 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Pfam PF01817 Chorismate mutase type II 51 130 6.0E-21 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Gene3D G3DSA:3.30.70.260 311 401 7.2E-30 T 31-10-2018 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Gene3D G3DSA:3.40.190.10 214 299 4.1E-55 T 31-10-2018 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 SUPERFAMILY SSF55021 304 399 6.41E-29 T 31-10-2018 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Pfam PF00800 Prephenate dehydratase 134 310 3.9E-59 T 31-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 SMART SM00830 51 132 4.8E-28 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 PIRSF PIRSF001500 41 401 2.8E-139 T 31-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Gene3D G3DSA:3.40.190.10 136 307 4.1E-55 T 31-10-2018 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Pfam PF01842 ACT domain 320 384 2.2E-12 T 31-10-2018 IPR002912 ACT domain BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 Gene3D G3DSA:1.20.59.10 49 133 9.4E-27 T 31-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 TIGRFAM TIGR01807 CM_P2: chorismate mutase 47 122 5.0E-23 T 31-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 BRM88_12655 4837a7a6f86f5b0fc14b35116f9e2e79 402 SUPERFAMILY SSF48600 47 135 9.62E-20 T 31-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_01830 3bd56cdd296dab1623e0f6f84a74b48c 263 Pfam PF01061 ABC-2 type transporter 17 225 1.3E-34 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 BRM88_01830 3bd56cdd296dab1623e0f6f84a74b48c 263 PIRSF PIRSF006648 1 260 2.2E-28 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_01830 3bd56cdd296dab1623e0f6f84a74b48c 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 183 202 2.2E-5 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_01830 3bd56cdd296dab1623e0f6f84a74b48c 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 65 87 2.2E-5 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_01830 3bd56cdd296dab1623e0f6f84a74b48c 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 109 134 2.2E-5 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 SUPERFAMILY SSF88946 24 96 3.65E-8 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 186 5.4E-23 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 Gene3D G3DSA:1.10.10.10 110 189 2.8E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 Pfam PF04542 Sigma-70 region 2 30 89 1.3E-5 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 SUPERFAMILY SSF88659 101 189 1.55E-16 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_19385 8b996574af72c66a493fbc4e76397bff 191 Pfam PF08281 Sigma-70, region 4 131 183 4.4E-17 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 Gene3D G3DSA:1.10.150.240 32 98 7.2E-54 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 199 1.5E-8 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 17 226 33.717 T 31-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 Pfam PF13419 Haloacid dehalogenase-like hydrolase 20 199 3.8E-31 T 31-10-2018 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 SUPERFAMILY SSF56784 18 226 1.87E-53 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 161 181 2.3E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 112 125 2.3E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 159 2.3E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 17 28 2.3E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 Gene3D G3DSA:3.40.50.1000 20 204 7.2E-54 T 31-10-2018 IPR023214 HAD superfamily BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 83 192 2.8E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_14225 33e638a0b05e1fb981058def54cb8f21 234 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 20 225 2.2E-76 T 31-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 BRM88_18175 b5195d708fca1867bc66f1b5a00db046 951 Pfam PF10101 Predicted membrane protein (DUF2339) 604 930 7.9E-38 T 31-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane BRM88_18175 b5195d708fca1867bc66f1b5a00db046 951 Pfam PF10101 Predicted membrane protein (DUF2339) 190 582 9.9E-107 T 31-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane BRM88_18175 b5195d708fca1867bc66f1b5a00db046 951 PIRSF PIRSF035905 1 578 1.2E-59 T 31-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein BRM88_18175 b5195d708fca1867bc66f1b5a00db046 951 PIRSF PIRSF035905 603 939 2.2E-6 T 31-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein BRM88_18175 b5195d708fca1867bc66f1b5a00db046 951 PIRSF PIRSF035905 569 711 180.0 T 31-10-2018 IPR014600 Uncharacterised conserved protein UCP035905, membrane protein BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 SUPERFAMILY SSF46785 258 331 3.73E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Gene3D G3DSA:1.10.10.10 258 335 2.9E-32 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Gene3D G3DSA:3.40.50.300 19 182 2.5E-38 T 31-10-2018 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 345 178.651 T 31-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 327 2.3E-145 T 31-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 SMART SM00382 52 179 3.4E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 251 333 4.0E-40 T 31-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 7.8E-33 T 31-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Gene3D G3DSA:1.10.8.60 183 256 1.0E-30 T 31-10-2018 BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 SUPERFAMILY SSF52540 21 253 3.43E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08600 1c48cfab23b7bcf52cacc2933cb40b90 345 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 5 236 1.9E-118 T 31-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 TIGRFAM TIGR00400 mgtE: magnesium transporter 21 451 1.1E-86 T 31-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Pfam PF03448 MgtE intracellular N domain 37 137 3.0E-27 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 SUPERFAMILY SSF54631 138 277 2.15E-25 T 31-10-2018 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Pfam PF00571 CBS domain 221 257 9.2E-4 T 31-10-2018 IPR000644 CBS domain BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 SMART SM00924 36 139 1.1E-37 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Gene3D G3DSA:3.10.580.10 135 262 7.0E-38 T 31-10-2018 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Gene3D G3DSA:1.25.60.10 11 134 7.2E-19 T 31-10-2018 IPR038076 MgtE, N-terminal domain superfamily BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 SUPERFAMILY SSF158791 13 136 9.29E-30 T 31-10-2018 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Pfam PF01769 Divalent cation transporter 323 444 6.4E-26 T 31-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 Gene3D G3DSA:1.10.357.20 278 451 5.5E-51 T 31-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain BRM88_06535 f6386de30ab9b76565fbc56ea1efdfa7 453 SUPERFAMILY SSF161093 280 451 2.48E-48 T 31-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 SUPERFAMILY SSF81891 183 414 8.24E-45 T 31-10-2018 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Pfam PF12626 Polymerase A arginine-rich C-terminus 326 448 1.4E-33 T 31-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 25 450 1.0E-152 T 31-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Gene3D G3DSA:1.10.3090.10 181 428 5.9E-81 T 31-10-2018 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Pfam PF01743 Poly A polymerase head domain 56 182 3.1E-35 T 31-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Gene3D G3DSA:3.30.460.10 22 179 1.3E-59 T 31-10-2018 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 210 272 5.7E-19 T 31-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 SUPERFAMILY SSF81301 27 180 9.59E-40 T 31-10-2018 BRM88_12540 7e306e4068c958ec686bbad34ebf874f 455 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 1 448 37.854 T 31-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SUPERFAMILY SSF55874 346 527 1.26E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SMART SM00260 521 660 2.2E-33 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SMART SM00073 4 102 1.4E-29 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Gene3D G3DSA:2.30.30.40 529 656 1.0E-37 T 31-10-2018 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Pfam PF01627 Hpt domain 10 100 8.6E-19 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SMART SM01231 281 344 3.7E-18 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 PRINTS PR00344 Bacterial sensor protein C-terminal signature 513 526 4.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 483 4.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 448 4.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 PRINTS PR00344 Bacterial sensor protein C-terminal signature 489 507 4.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SUPERFAMILY SSF50341 528 660 1.57E-31 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Gene3D G3DSA:2.40.50.180 552 615 1.0E-37 T 31-10-2018 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SUPERFAMILY SSF47226 5 129 4.19E-32 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SMART SM00387 389 529 9.3E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 282 342 1.9E-15 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Gene3D G3DSA:1.10.287.560 281 344 3.9E-15 T 31-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Gene3D G3DSA:1.20.120.160 1 143 1.3E-39 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Pfam PF01584 CheW-like domain 534 663 8.7E-27 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Gene3D G3DSA:3.30.565.10 345 528 1.3E-53 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 SUPERFAMILY SSF47384 282 345 8.24E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_15105 a4099675916bd81f3fb6bc1d19aab2e2 669 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 528 1.2E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_22445 e4d94c2562af55802c72cb3659c70fd9 158 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 6 155 32.459 T 31-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BRM88_22445 e4d94c2562af55802c72cb3659c70fd9 158 SUPERFAMILY SSF75217 8 156 7.19E-44 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_22445 e4d94c2562af55802c72cb3659c70fd9 158 PIRSF PIRSF029256 5 158 3.9E-61 T 31-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BRM88_22445 e4d94c2562af55802c72cb3659c70fd9 158 Gene3D G3DSA:3.40.1280.10 1 158 8.1E-62 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_22445 e4d94c2562af55802c72cb3659c70fd9 158 Pfam PF00588 SpoU rRNA Methylase family 8 145 4.1E-32 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BRM88_00735 9e6c0a7c87022aa9ecb12a049f3b680c 229 Pfam PF00005 ABC transporter 24 172 9.6E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_00735 9e6c0a7c87022aa9ecb12a049f3b680c 229 SUPERFAMILY SSF52540 4 223 1.05E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00735 9e6c0a7c87022aa9ecb12a049f3b680c 229 SMART SM00382 33 221 1.1E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_00735 9e6c0a7c87022aa9ecb12a049f3b680c 229 Gene3D G3DSA:3.40.50.300 1 228 1.2E-69 T 31-10-2018 BRM88_00735 9e6c0a7c87022aa9ecb12a049f3b680c 229 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_15795 2a7b69f54535daec4690ccb8fd10aece 121 Pfam PF04977 Septum formation initiator 14 92 3.7E-30 T 31-10-2018 IPR007060 Septum formation initiator FtsL/DivIC BRM88_15795 2a7b69f54535daec4690ccb8fd10aece 121 Hamap MF_00599 Cell division protein FtsB [ftsB]. 2 93 35.159 T 31-10-2018 IPR023081 Cell division protein FtsB BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 Gene3D G3DSA:3.30.70.120 1 112 3.1E-46 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 4.3E-42 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 SMART SM00938 4 105 2.2E-66 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 PRINTS PR00340 P-II protein signature 83 103 6.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 PRINTS PR00340 P-II protein signature 2 17 6.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 PRINTS PR00340 P-II protein signature 23 41 6.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 PRINTS PR00340 P-II protein signature 52 75 6.5E-43 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 SUPERFAMILY SSF54913 1 112 1.33E-45 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 31-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 PIRSF PIRSF039144 1 112 2.4E-53 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_23845 fb6578bfa3f1600668514e70209f32c9 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 31-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 7 98 7.9E-16 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 521 1.1E-209 T 31-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 104 186 3.17E-14 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 191 277 4.62E-27 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 99 185 4.8E-7 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 359 445 5.1E-24 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 270 358 3.0E-30 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 446 527 7.7E-18 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 430 537 2.16E-20 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 277 348 1.3E-22 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 189 261 1.5E-22 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 104 172 8.2E-10 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 18 87 1.2E-4 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 451 521 3.9E-12 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Pfam PF00575 S1 RNA binding domain 362 435 1.1E-19 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 20 88 5.7E-6 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 276 348 1.2E-27 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 363 435 1.1E-20 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 104 172 2.1E-8 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 191 261 1.3E-28 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SMART SM00316 450 521 4.2E-15 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 343 441 6.71E-23 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 1 113 2.31E-21 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PIRSF PIRSF002111 1 535 1.4E-213 T 31-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 SUPERFAMILY SSF50249 256 364 1.27E-28 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 Gene3D G3DSA:2.40.50.140 188 269 9.3E-28 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 22 40 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 109 125 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 331 349 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 291 310 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 85 104 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 127 144 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 40 54 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 156 176 2.7E-86 T 31-10-2018 BRM88_11365 f7e121438db7f6bd7356a57e45dc87f4 561 PRINTS PR00681 Ribosomal protein S1 signature 213 234 2.7E-86 T 31-10-2018 BRM88_03370 c0f961670748ba7507a1a66c433329be 314 Gene3D G3DSA:3.40.50.300 2 236 9.5E-65 T 31-10-2018 BRM88_03370 c0f961670748ba7507a1a66c433329be 314 SUPERFAMILY SSF52540 4 229 4.66E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03370 c0f961670748ba7507a1a66c433329be 314 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_03370 c0f961670748ba7507a1a66c433329be 314 Pfam PF00005 ABC transporter 21 163 9.1E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_03370 c0f961670748ba7507a1a66c433329be 314 SMART SM00382 30 226 2.6E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_15135 58cb67c8148a3f8cdaab1755d010cceb 253 Pfam PF13557 Putative MetA-pathway of phenol degradation 27 253 6.5E-19 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:1.10.287.130 646 719 2.1E-16 T 31-10-2018 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Pfam PF00512 His Kinase A (phospho-acceptor) domain 653 719 1.1E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:3.30.565.10 729 875 1.8E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:1.20.120.620 391 496 4.7E-23 T 31-10-2018 IPR038318 KdpD, transmembrane domain superfamily BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SUPERFAMILY SSF47384 648 719 9.02E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Pfam PF13493 Domain of unknown function (DUF4118) 398 498 1.2E-22 T 31-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:3.40.50.620 235 371 2.0E-11 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Pfam PF00582 Universal stress protein family 249 360 1.2E-5 T 31-10-2018 IPR006016 UspA BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SUPERFAMILY SSF52540 21 223 1.44E-6 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:3.30.450.40 506 643 2.8E-22 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SMART SM00387 764 876 2.6E-30 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 801 815 3.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 819 829 3.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 860 873 3.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 PRINTS PR00344 Bacterial sensor protein C-terminal signature 835 853 3.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SUPERFAMILY SSF52402 250 362 8.37E-12 T 31-10-2018 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 229 5.7E-94 T 31-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 769 874 2.3E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SMART SM00388 652 720 6.7E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 SUPERFAMILY SSF55874 710 877 5.76E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20495 17a8ae936fe0d0c1852cb4286d2fe5cc 886 Gene3D G3DSA:3.40.50.300 18 228 8.9E-98 T 31-10-2018 BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Pfam PF00563 EAL domain 447 679 1.1E-53 T 31-10-2018 IPR001633 EAL domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Pfam PF13188 PAS domain 148 200 4.5E-4 T 31-10-2018 IPR000014 PAS domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Gene3D G3DSA:3.30.450.20 132 252 9.0E-13 T 31-10-2018 BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Gene3D G3DSA:3.20.20.450 430 689 1.5E-75 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SMART SM00267 258 429 2.0E-7 T 31-10-2018 IPR000160 GGDEF domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 267 427 1.0E-15 T 31-10-2018 IPR000160 GGDEF domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Gene3D G3DSA:3.30.70.270 260 429 2.1E-29 T 31-10-2018 BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SUPERFAMILY SSF55785 132 251 3.24E-12 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SMART SM00052 441 685 1.9E-29 T 31-10-2018 IPR001633 EAL domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SUPERFAMILY SSF55073 275 431 1.1E-20 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SUPERFAMILY SSF52172 8 142 8.0E-6 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 Pfam PF00990 Diguanylate cyclase, GGDEF domain 271 418 1.0E-16 T 31-10-2018 IPR000160 GGDEF domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 248 3.5E-7 T 31-10-2018 IPR000014 PAS domain BRM88_14350 14a5e8e3769dbbc77c3787e6c769e1a5 689 SUPERFAMILY SSF141868 447 680 1.18E-48 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Pfam PF00072 Response regulator receiver domain 1053 1162 3.1E-20 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SMART SM00387 919 1031 2.5E-35 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Pfam PF07495 Y_Y_Y domain 691 751 2.4E-13 T 31-10-2018 IPR011123 Two component regulator three Y BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:2.60.40.10 641 759 3.5E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SMART SM00388 807 872 4.0E-21 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Pfam PF00512 His Kinase A (phospho-acceptor) domain 807 872 5.7E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 919 1030 2.5E-27 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Pfam PF07494 Two component regulator propeller 174 196 3.3E-4 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF47384 796 873 1.45E-17 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF63829 445 630 1.19E-13 T 31-10-2018 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 955 969 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1015 1028 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 991 1009 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 973 983 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF52172 1049 1167 1.11E-31 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF63829 300 475 2.22E-8 T 31-10-2018 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF55874 861 1029 1.31E-42 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:2.130.10.10 38 250 2.5E-38 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:2.130.10.10 447 638 6.6E-17 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:3.40.50.12740 1050 1185 2.5E-30 T 31-10-2018 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:1.10.287.130 779 870 4.5E-23 T 31-10-2018 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SMART SM00448 1051 1162 2.0E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:2.130.10.10 262 446 4.0E-13 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 SUPERFAMILY SSF63829 40 264 5.69E-10 T 31-10-2018 BRM88_09555 c793adf13ea563ccd34731fde9fb4ed9 1185 Gene3D G3DSA:3.30.565.10 871 1034 3.7E-41 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_22895 8583f1a9501a186565aa64c5a79cc44f 1286 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 956 1284 1.2E-54 T 31-10-2018 IPR007452 Translocation and assembly module TamB BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Pfam PF11799 impB/mucB/samB family C-terminal domain 246 359 1.2E-12 T 31-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Pfam PF13438 Domain of unknown function (DUF4113) 374 426 1.8E-16 T 31-10-2018 IPR025188 Domain of unknown function DUF4113 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 SUPERFAMILY SSF56672 1 242 9.78E-62 T 31-10-2018 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Gene3D G3DSA:1.10.150.20 174 236 1.5E-9 T 31-10-2018 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Gene3D G3DSA:2.30.40.20 10 72 4.9E-38 T 31-10-2018 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Gene3D G3DSA:3.30.70.270 4 151 4.9E-38 T 31-10-2018 BRM88_08965 d8fa0a6264d853efe5aef60168935f2a 428 Pfam PF00817 impB/mucB/samB family 5 146 4.6E-31 T 31-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 SUPERFAMILY SSF50249 1 112 2.69E-27 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 2.2E-227 T 31-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Pfam PF01336 OB-fold nucleic acid binding domain 18 105 7.5E-13 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 32.858 T 31-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Gene3D G3DSA:3.30.930.10 120 582 3.3E-190 T 31-10-2018 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 SUPERFAMILY SSF55681 115 585 2.59E-105 T 31-10-2018 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 6.3E-26 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 6.3E-26 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 6.3E-26 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 6.3E-26 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Pfam PF02938 GAD domain 311 405 9.1E-26 T 31-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Gene3D G3DSA:3.30.1360.30 275 420 3.3E-190 T 31-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 558 4.2E-106 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 Gene3D G3DSA:2.40.50.140 1 114 8.7E-29 T 31-10-2018 BRM88_08565 eaeb4b3dad489a4f04751533e59e9153 588 SUPERFAMILY SSF55261 294 420 4.14E-41 T 31-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BRM88_23965 bb4217cb219b2b2a7e867a190c8b5091 245 Gene3D G3DSA:3.40.50.300 2 245 5.6E-69 T 31-10-2018 BRM88_23965 bb4217cb219b2b2a7e867a190c8b5091 245 SMART SM00382 26 212 8.5E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_23965 bb4217cb219b2b2a7e867a190c8b5091 245 Pfam PF00005 ABC transporter 17 162 1.4E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_23965 bb4217cb219b2b2a7e867a190c8b5091 245 SUPERFAMILY SSF52540 1 237 1.22E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23965 bb4217cb219b2b2a7e867a190c8b5091 245 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 Pfam PF01207 Dihydrouridine synthase (Dus) 16 318 3.3E-77 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 8 327 48.5 T 31-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 31-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 PIRSF PIRSF006621 4 327 1.0E-76 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 Gene3D G3DSA:1.20.120.1460 250 329 2.9E-17 T 31-10-2018 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 13 324 7.3E-120 T 31-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 Gene3D G3DSA:3.20.20.70 11 249 3.2E-73 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_02045 9b180ff5b284b0239daa41c3d08e98a0 334 SUPERFAMILY SSF51395 13 323 8.24E-71 T 31-10-2018 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 156 183 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 SUPERFAMILY SSF55021 334 412 8.4E-15 T 31-10-2018 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 296 8.3E-51 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 202 224 - T 31-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 SUPERFAMILY SSF51735 110 297 7.9E-56 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 328 8.0E-37 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 SUPERFAMILY SSF52283 10 137 4.04E-47 T 31-10-2018 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 Gene3D G3DSA:3.40.50.720 111 299 9.5E-105 T 31-10-2018 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 Gene3D G3DSA:3.30.70.260 330 412 2.8E-28 T 31-10-2018 BRM88_11165 41bbd5c6e144cc53363f38f5f3505848 413 Gene3D G3DSA:3.40.50.720 16 314 9.5E-105 T 31-10-2018 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Gene3D G3DSA:2.30.40.20 11 69 1.3E-27 T 31-10-2018 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Hamap MF_01113 DNA polymerase IV [dinB]. 1 351 37.303 T 31-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Gene3D G3DSA:3.30.1490.100 240 346 8.5E-19 T 31-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Pfam PF00817 impB/mucB/samB family 7 153 1.7E-52 T 31-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 SUPERFAMILY SSF100879 239 338 1.88E-20 T 31-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Gene3D G3DSA:3.30.70.270 70 114 1.5E-10 T 31-10-2018 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Pfam PF11799 impB/mucB/samB family C-terminal domain 232 346 2.9E-18 T 31-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Gene3D G3DSA:1.10.150.20 169 228 1.5E-17 T 31-10-2018 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 Gene3D G3DSA:3.30.70.270 115 168 5.4E-23 T 31-10-2018 BRM88_03805 6521bf2c6f6a0449df56988a6534cd37 359 SUPERFAMILY SSF56672 1 233 1.07E-91 T 31-10-2018 BRM88_18610 8e974e1fb65bc9271db4225987c69655 162 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 5 153 5.2E-39 T 31-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein BRM88_18610 8e974e1fb65bc9271db4225987c69655 162 SUPERFAMILY SSF160719 33 146 1.18E-10 T 31-10-2018 BRM88_18610 8e974e1fb65bc9271db4225987c69655 162 Pfam PF04965 Gene 25-like lysozyme 33 133 1.7E-20 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 TIGRFAM TIGR02063 RNase_R: ribonuclease R 122 818 4.8E-257 T 31-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SUPERFAMILY SSF50249 168 248 9.68E-17 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Pfam PF08206 Ribonuclease B OB domain 188 245 5.6E-22 T 31-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SMART SM00316 735 818 9.5E-11 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 ProSitePatterns PS01175 Ribonuclease II family signature. 656 680 - T 31-10-2018 IPR022966 Ribonuclease II/R, conserved site BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SMART SM00357 187 246 2.2E-12 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SUPERFAMILY SSF50249 239 338 3.51E-11 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 177 817 2.6E-206 T 31-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SUPERFAMILY SSF50249 738 817 3.43E-18 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Gene3D G3DSA:2.40.50.140 739 842 5.7E-19 T 31-10-2018 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SUPERFAMILY SSF50249 326 735 1.94E-138 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 SMART SM00955 361 689 6.5E-174 T 31-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Pfam PF00575 S1 RNA binding domain 736 815 4.1E-11 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Pfam PF00773 RNB domain 361 688 9.9E-103 T 31-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Gene3D G3DSA:2.40.50.140 177 248 4.2E-18 T 31-10-2018 BRM88_10840 0f5f5854b327187aabe66cc37deb7d8a 842 Hamap MF_01895 Ribonuclease R [rnr]. 141 818 57.049 T 31-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BRM88_05640 ee948460fb497a1f030c2e142269cf08 284 Pfam PF12680 SnoaL-like domain 48 155 2.4E-13 T 31-10-2018 IPR037401 SnoaL-like domain BRM88_05640 ee948460fb497a1f030c2e142269cf08 284 SUPERFAMILY SSF54427 44 165 5.61E-24 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_05640 ee948460fb497a1f030c2e142269cf08 284 Gene3D G3DSA:3.10.450.50 42 168 3.0E-24 T 31-10-2018 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 18 469 2.2E-99 T 31-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 Gene3D G3DSA:3.30.870.10 111 292 1.3E-34 T 31-10-2018 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 Pfam PF13396 Phospholipase_D-nuclease N-terminal 25 57 1.4E-4 T 31-10-2018 IPR027379 Cardiolipin synthase N-terminal BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 SMART SM00155 385 412 2.1 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 SMART SM00155 214 241 0.015 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 Gene3D G3DSA:3.30.870.10 293 470 6.4E-24 T 31-10-2018 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 SUPERFAMILY SSF56024 104 301 2.88E-46 T 31-10-2018 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 Pfam PF13091 PLD-like domain 130 271 3.7E-20 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 Pfam PF13091 PLD-like domain 314 435 8.2E-22 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_24265 d87c19acfa42f173214b3daad9918b98 472 SUPERFAMILY SSF56024 263 459 1.53E-44 T 31-10-2018 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 Gene3D G3DSA:3.40.190.10 167 267 6.9E-63 T 31-10-2018 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 SUPERFAMILY SSF46785 1 88 2.94E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_18120 e417fc682a20c2677e52897501430e6a 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 2.0E-15 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 Gene3D G3DSA:1.10.10.10 1 86 2.7E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_18120 e417fc682a20c2677e52897501430e6a 327 Pfam PF03466 LysR substrate binding domain 89 292 1.8E-37 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_18120 e417fc682a20c2677e52897501430e6a 327 Gene3D G3DSA:3.40.190.10 92 301 6.9E-63 T 31-10-2018 BRM88_18120 e417fc682a20c2677e52897501430e6a 327 SUPERFAMILY SSF53850 91 297 1.69E-35 T 31-10-2018 BRM88_19380 d2c55a8b78dcec72e5c5be3df8371635 101 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 8 90 9.4E-29 T 31-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 Gene3D G3DSA:1.10.3210.10 317 504 1.2E-55 T 31-10-2018 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 SUPERFAMILY SSF53067 142 314 6.64E-43 T 31-10-2018 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 SUPERFAMILY SSF109604 319 496 3.51E-47 T 31-10-2018 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 Gene3D G3DSA:3.30.420.40 18 309 7.5E-83 T 31-10-2018 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 17 312 4.7E-98 T 31-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 Pfam PF02541 Ppx/GppA phosphatase family 30 313 4.1E-65 T 31-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 PIRSF PIRSF001267 7 508 1.2E-201 T 31-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 SUPERFAMILY SSF53067 17 137 7.96E-32 T 31-10-2018 BRM88_19590 56c2e2c3dec9acf39926e6f69c14bd02 508 Gene3D G3DSA:3.30.420.150 121 301 7.5E-83 T 31-10-2018 BRM88_01650 0fc1f3cf8799dc2f37a9bedd7899b679 121 SUPERFAMILY SSF54909 3 113 1.07E-23 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_01650 0fc1f3cf8799dc2f37a9bedd7899b679 121 Pfam PF05336 L-rhamnose mutarotase 5 112 3.1E-25 T 31-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 BRM88_01650 0fc1f3cf8799dc2f37a9bedd7899b679 121 Gene3D G3DSA:3.30.70.100 1 103 1.4E-11 T 31-10-2018 BRM88_07715 79ab7d8b236afff33765f018301c067a 352 SUPERFAMILY SSF46689 20 138 1.36E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_07715 79ab7d8b236afff33765f018301c067a 352 Gene3D G3DSA:3.30.420.470 141 343 5.1E-8 T 31-10-2018 BRM88_07715 79ab7d8b236afff33765f018301c067a 352 Pfam PF13551 Winged helix-turn helix 27 86 9.6E-15 T 31-10-2018 BRM88_07715 79ab7d8b236afff33765f018301c067a 352 Pfam PF13358 DDE superfamily endonuclease 178 317 3.7E-31 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_07715 79ab7d8b236afff33765f018301c067a 352 Pfam PF13592 Winged helix-turn helix 104 162 1.9E-18 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_03865 775eaa8c3012afd58ea3172180a992c8 379 Pfam PF00437 Type II/IV secretion system protein 11 271 1.0E-36 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_03865 775eaa8c3012afd58ea3172180a992c8 379 Gene3D G3DSA:3.40.50.300 103 354 1.3E-90 T 31-10-2018 BRM88_03865 775eaa8c3012afd58ea3172180a992c8 379 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 8 343 3.0E-132 T 31-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 BRM88_03865 775eaa8c3012afd58ea3172180a992c8 379 Gene3D G3DSA:3.30.450.90 2 101 1.8E-27 T 31-10-2018 BRM88_03865 775eaa8c3012afd58ea3172180a992c8 379 SUPERFAMILY SSF52540 9 339 4.61E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 329 348 2.2E-15 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 96 114 2.2E-15 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 235 248 2.2E-15 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 534 547 2.2E-15 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 119 131 2.2E-15 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 TIGRFAM TIGR01273 speA: arginine decarboxylase 4 623 6.1E-260 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 Gene3D G3DSA:1.20.58.930 361 452 5.2E-216 T 31-10-2018 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 64 79 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 534 555 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 456 477 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 88 102 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 142 157 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 192 214 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 481 506 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 168 189 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PRINTS PR01180 Arginine decarboxylase signature 319 336 1.3E-67 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 SUPERFAMILY SSF50621 448 563 6.7E-7 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 Gene3D G3DSA:2.40.37.10 13 560 5.2E-216 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 73 339 1.2E-44 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 SUPERFAMILY SSF51419 64 341 4.11E-62 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 2 624 42.542 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 PIRSF PIRSF001336 1 625 5.6E-239 T 31-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 270 286 - T 31-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BRM88_01045 89876c50dc7cbdebde13d370d4955182 628 Gene3D G3DSA:3.20.20.10 65 344 5.2E-216 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 Gene3D G3DSA:3.90.1510.10 42 276 5.7E-141 T 31-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 SUPERFAMILY SSF110738 1 375 2.75E-138 T 31-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 Pfam PF02595 Glycerate kinase family 3 373 1.6E-148 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 PIRSF PIRSF006078 1 377 3.2E-134 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 5.9E-155 T 31-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BRM88_24575 2a8359a952ede473afe7590720fbfeb0 389 Gene3D G3DSA:3.40.50.10350 2 360 5.7E-141 T 31-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold BRM88_18585 71c12933f91983396149fc9619372098 920 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 584 683 1.4E-26 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_18585 71c12933f91983396149fc9619372098 920 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 355 4.6E-60 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_18585 71c12933f91983396149fc9619372098 920 SUPERFAMILY SSF69279 23 214 1.53E-49 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 Gene3D G3DSA:3.30.1920.30 249 311 7.0E-87 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 Gene3D G3DSA:2.40.50.230 423 535 1.5E-34 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_18585 71c12933f91983396149fc9619372098 920 SUPERFAMILY SSF69279 223 417 9.35E-17 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 725 886 4.0E-31 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_18585 71c12933f91983396149fc9619372098 920 Gene3D G3DSA:3.55.50.10 113 218 7.0E-87 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 Pfam PF05954 Phage late control gene D protein (GPD) 45 356 1.5E-78 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 SUPERFAMILY SSF69255 429 531 1.26E-22 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 Gene3D G3DSA:2.30.110.50 26 355 7.0E-87 T 31-10-2018 BRM88_18585 71c12933f91983396149fc9619372098 920 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 535 2.8E-74 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_11700 11b21469f8266c26731f88eefcad133d 434 Gene3D G3DSA:3.40.50.1100 89 399 2.8E-121 T 31-10-2018 BRM88_11700 11b21469f8266c26731f88eefcad133d 434 Gene3D G3DSA:3.90.1380.10 1 79 1.7E-16 T 31-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily BRM88_11700 11b21469f8266c26731f88eefcad133d 434 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 93 107 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BRM88_11700 11b21469f8266c26731f88eefcad133d 434 SUPERFAMILY SSF53686 2 430 1.05E-122 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_11700 11b21469f8266c26731f88eefcad133d 434 Pfam PF14821 Threonine synthase N terminus 2 75 7.2E-14 T 31-10-2018 IPR029144 Threonine synthase, N-terminal BRM88_11700 11b21469f8266c26731f88eefcad133d 434 Gene3D G3DSA:3.40.50.1100 99 406 2.8E-121 T 31-10-2018 BRM88_11700 11b21469f8266c26731f88eefcad133d 434 TIGRFAM TIGR00260 thrC: threonine synthase 64 398 9.2E-71 T 31-10-2018 IPR004450 Threonine synthase-like BRM88_11700 11b21469f8266c26731f88eefcad133d 434 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 370 5.9E-22 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 SUPERFAMILY SSF52540 1 142 2.45E-39 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 PIRSF PIRSF035805 1 197 4.7E-50 T 31-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 SUPERFAMILY SSF57716 143 195 2.85E-13 T 31-10-2018 BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 Pfam PF00265 Thymidine kinase 2 185 4.1E-48 T 31-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 Hamap MF_00124 Thymidine kinase [tdk]. 1 190 33.099 T 31-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BRM88_01175 80a3cbfe24559d73352db4c2dab2294a 209 Gene3D G3DSA:3.40.50.300 1 141 2.5E-24 T 31-10-2018 BRM88_11695 a18e6a2e51dab6a7a2323c5107c3ab54 104 Gene3D G3DSA:3.30.70.100 2 100 2.2E-30 T 31-10-2018 BRM88_11695 a18e6a2e51dab6a7a2323c5107c3ab54 104 TIGRFAM TIGR02118 TIGR02118: conserved hypothetical protein 1 102 9.4E-36 T 31-10-2018 IPR009799 EthD domain BRM88_11695 a18e6a2e51dab6a7a2323c5107c3ab54 104 Pfam PF07110 EthD domain 18 92 1.5E-7 T 31-10-2018 IPR009799 EthD domain BRM88_11695 a18e6a2e51dab6a7a2323c5107c3ab54 104 SUPERFAMILY SSF54909 1 102 1.66E-20 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 ProSitePatterns PS01016 Glycoprotease family signature. 100 120 - T 31-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 Gene3D G3DSA:3.30.420.40 3 319 1.6E-124 T 31-10-2018 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 2.8E-130 T 31-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 135 147 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 179 1.6E-51 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 Gene3D G3DSA:3.30.420.40 133 297 1.6E-124 T 31-10-2018 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 SUPERFAMILY SSF53067 3 127 1.17E-30 T 31-10-2018 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 Pfam PF00814 Glycoprotease family 29 311 1.8E-99 T 31-10-2018 IPR000905 Gcp-like domain BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 2.7E-113 T 31-10-2018 IPR017861 Kae1/TsaD family BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 SUPERFAMILY SSF53067 105 313 3.88E-40 T 31-10-2018 BRM88_22010 f876ef139a0988f973ed322ad3437d75 354 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 63.78 T 31-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 Gene3D G3DSA:1.10.287.500 63 124 9.0E-10 T 31-10-2018 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 Pfam PF04344 Chemotaxis phosphatase, CheZ 125 207 1.1E-13 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 Pfam PF04344 Chemotaxis phosphatase, CheZ 48 113 4.0E-11 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 PIRSF PIRSF002884 24 127 3.6E-28 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 PIRSF PIRSF002884 120 208 9.3E-26 T 31-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BRM88_13805 9a03978e390e8c7a9e25debd859be8d9 208 SUPERFAMILY SSF75708 38 207 2.75E-38 T 31-10-2018 BRM88_09870 173b89ef494a39c3566ea789b5392669 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.7E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_09870 173b89ef494a39c3566ea789b5392669 439 SUPERFAMILY SSF53098 18 403 1.37E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_02285 d7b8d9ca6f4467404506a646efef389d 540 Pfam PF01494 FAD binding domain 6 191 1.7E-10 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 BRM88_02285 d7b8d9ca6f4467404506a646efef389d 540 SUPERFAMILY SSF51905 3 391 3.53E-32 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_02285 d7b8d9ca6f4467404506a646efef389d 540 Gene3D G3DSA:3.50.50.60 2 399 6.8E-89 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SMART SM00283 448 695 6.0E-94 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SUPERFAMILY SSF158472 214 265 1.19E-9 T 31-10-2018 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 Pfam PF00672 HAMP domain 214 262 2.4E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 623 652 7.5E-60 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 575 604 7.5E-60 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 546 573 7.5E-60 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 469 498 7.5E-60 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 193 218 7.5E-60 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 Pfam PF12729 Four helix bundle sensory module for signal transduction 9 182 1.9E-24 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 Gene3D G3DSA:1.20.120.1530 205 352 2.6E-44 T 31-10-2018 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 508 662 3.1E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SMART SM00304 395 447 19.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SMART SM00304 305 356 52.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SMART SM00304 214 266 1.2E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 Gene3D G3DSA:1.10.287.950 395 697 1.2E-86 T 31-10-2018 BRM88_15150 73a6e49cd6d199fb411f3b00c69290a7 748 SUPERFAMILY SSF58104 415 696 1.83E-72 T 31-10-2018 BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 Gene3D G3DSA:3.30.450.20 190 278 4.8E-20 T 31-10-2018 BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 Gene3D G3DSA:3.30.70.270 315 494 9.2E-58 T 31-10-2018 BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 326 492 1.6E-49 T 31-10-2018 IPR000160 GGDEF domain BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 SMART SM00267 318 494 1.4E-62 T 31-10-2018 IPR000160 GGDEF domain BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 Gene3D G3DSA:3.30.450.20 36 187 4.0E-37 T 31-10-2018 BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 Pfam PF02743 Cache domain 44 267 3.1E-21 T 31-10-2018 IPR033479 Double Cache domain 1 BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 Pfam PF00990 Diguanylate cyclase, GGDEF domain 329 491 2.4E-48 T 31-10-2018 IPR000160 GGDEF domain BRM88_07400 6a206fede3d69b667bbc82722afabcff 494 SUPERFAMILY SSF55073 334 492 4.24E-47 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_23050 23f434837a57d0dfc2e347e59798853b 221 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 19 195 33.482 T 31-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 BRM88_23050 23f434837a57d0dfc2e347e59798853b 221 Pfam PF02677 Uncharacterized BCR, COG1636 19 193 3.9E-64 T 31-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 SUPERFAMILY SSF63380 5 112 3.76E-19 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 Gene3D G3DSA:2.40.30.10 1 105 4.3E-16 T 31-10-2018 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 SUPERFAMILY SSF52343 110 247 8.51E-33 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 213 221 2.1E-6 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 2.1E-6 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 145 154 2.1E-6 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 101 110 2.1E-6 T 31-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 Pfam PF00970 Oxidoreductase FAD-binding domain 7 106 2.8E-11 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 Gene3D G3DSA:3.40.50.80 109 249 4.7E-31 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 213 221 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 54 61 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 118 137 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 157 168 1.4E-6 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01840 e26bb3aa0c47251f99d36fe8ae444041 253 Pfam PF00175 Oxidoreductase NAD-binding domain 119 225 1.2E-17 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 92 177 3.7E-36 T 31-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 SUPERFAMILY SSF55200 92 179 4.58E-31 T 31-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 17 179 1.0E-63 T 31-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 SUPERFAMILY SSF54364 15 87 2.88E-29 T 31-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 Gene3D G3DSA:3.10.20.80 11 84 2.7E-33 T 31-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 10 179 31.18 T 31-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 ProSitePatterns PS00938 Initiation factor 3 signature. 67 80 - T 31-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 Gene3D G3DSA:3.30.110.10 85 180 5.8E-37 T 31-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BRM88_17040 bfd9771aba7fc28f9c8a501c9971f594 180 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 17 85 4.1E-30 T 31-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BRM88_08060 979953e57643b2951d24203be7137ba4 229 SUPERFAMILY SSF52172 1 126 1.37E-40 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_08060 979953e57643b2951d24203be7137ba4 229 Gene3D G3DSA:1.10.10.10 128 229 3.2E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_08060 979953e57643b2951d24203be7137ba4 229 SMART SM00448 4 114 1.8E-40 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_08060 979953e57643b2951d24203be7137ba4 229 SUPERFAMILY SSF46894 127 228 7.09E-20 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_08060 979953e57643b2951d24203be7137ba4 229 SMART SM00862 152 228 9.4E-21 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_08060 979953e57643b2951d24203be7137ba4 229 Gene3D G3DSA:3.40.50.2300 1 127 2.0E-37 T 31-10-2018 BRM88_08060 979953e57643b2951d24203be7137ba4 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 228 1.3E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_08060 979953e57643b2951d24203be7137ba4 229 Pfam PF00072 Response regulator receiver domain 6 114 1.6E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 298 332 7.0E-11 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Gene3D G3DSA:2.160.10.10 210 380 2.9E-56 T 31-10-2018 BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 255 289 9.6E-5 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 129 395 3.0E-127 T 31-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 SUPERFAMILY SSF51161 126 379 2.91E-71 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 123 395 54.243 T 31-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Gene3D G3DSA:1.10.166.10 113 193 6.2E-24 T 31-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 BRM88_10360 03b99f898fe4b761e33994cf9da62699 398 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 126 192 1.4E-21 T 31-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR00107 Phosphocarrier protein signature 173 189 1.7E-14 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR00107 Phosphocarrier protein signature 198 213 1.7E-14 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR00107 Phosphocarrier protein signature 213 230 1.7E-14 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Pfam PF05524 PEP-utilising enzyme, N-terminal 277 395 1.4E-19 T 31-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 199 214 - T 31-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Gene3D G3DSA:1.10.274.10 294 415 9.3E-62 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Pfam PF00381 PTS HPr component phosphorylation site 164 238 3.3E-19 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 275 830 1.4E-144 T 31-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 31-10-2018 IPR002178 PTS EIIA type-2 domain BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 455 466 - T 31-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Gene3D G3DSA:3.50.30.10 277 504 9.3E-62 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 173 180 - T 31-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 SUPERFAMILY SSF47831 311 410 6.02E-23 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 144 6.7E-27 T 31-10-2018 IPR002178 PTS EIIA type-2 domain BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 SUPERFAMILY SSF55804 10 145 4.71E-32 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Gene3D G3DSA:3.30.1340.10 162 244 3.5E-20 T 31-10-2018 IPR035895 HPr-like superfamily BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 522 806 7.6E-107 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Gene3D G3DSA:3.40.930.10 5 147 3.3E-30 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 SUPERFAMILY SSF55594 163 242 4.32E-20 T 31-10-2018 IPR035895 HPr-like superfamily BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Gene3D G3DSA:3.20.20.60 505 837 2.4E-113 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 SUPERFAMILY SSF52009 395 516 2.62E-28 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 713 731 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 564 583 6.1E-21 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 713 728 6.1E-21 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 766 778 6.1E-21 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 730 745 6.1E-21 T 31-10-2018 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 164 239 5.1E-17 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 Pfam PF00391 PEP-utilising enzyme, mobile domain 425 496 8.8E-20 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BRM88_14845 7d9d295558b4c4fa9aaee538444be965 838 SUPERFAMILY SSF51621 524 815 1.02E-98 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Pfam PF00905 Penicillin binding protein transpeptidase domain 266 604 3.2E-64 T 31-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 SUPERFAMILY SSF56519 57 248 3.79E-47 T 31-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 233 1.0E-40 T 31-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 SUPERFAMILY SSF56601 250 607 1.43E-91 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 611 46.803 T 31-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Gene3D G3DSA:3.90.1310.10 66 244 1.1E-43 T 31-10-2018 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Gene3D G3DSA:3.40.710.10 248 610 1.2E-89 T 31-10-2018 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 607 8.4E-205 T 31-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21185 e101fc1fdba0d0ff34576bf6f264c1a6 686 Gene3D G3DSA:3.30.1390.30 85 160 1.1E-43 T 31-10-2018 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Gene3D G3DSA:3.30.1490.20 131 203 6.4E-155 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 SMART SM00878 336 441 7.0E-69 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 SUPERFAMILY SSF56059 83 344 6.01E-67 T 31-10-2018 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 SUPERFAMILY SSF51246 331 444 1.05E-44 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Gene3D G3DSA:3.30.470.20 86 433 6.4E-155 T 31-10-2018 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 2.8E-44 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 1.0E-81 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 4.5E-232 T 31-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.3E-40 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 SUPERFAMILY SSF52440 1 113 5.11E-47 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_02830 bbc6034dc7d6b7c9a41f6fb43a62d850 455 Gene3D G3DSA:3.40.50.20 1 85 2.1E-34 T 31-10-2018 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 PIRSF PIRSF000239 1 187 6.9E-46 T 31-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 Gene3D G3DSA:3.40.30.10 1 186 5.1E-58 T 31-10-2018 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 3.9E-5 T 31-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 Pfam PF00578 AhpC/TSA family 4 132 6.2E-30 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 3.1E-95 T 31-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BRM88_19470 288bfff5f6f1ab624b9d7ec7f48b6e37 187 SUPERFAMILY SSF52833 2 186 3.23E-51 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_07210 143b0c2332c259172ed9f21915e9a38d 72 SUPERFAMILY SSF52317 6 55 9.58E-5 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_07210 143b0c2332c259172ed9f21915e9a38d 72 Gene3D G3DSA:3.40.50.880 1 72 5.0E-10 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Gene3D G3DSA:3.40.50.300 276 542 2.0E-67 T 31-10-2018 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 SUPERFAMILY SSF52540 3 230 1.1E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 SUPERFAMILY SSF52540 309 511 2.45E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Pfam PF00005 ABC transporter 20 180 3.6E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Pfam PF12848 ABC transporter 219 293 9.5E-10 T 31-10-2018 IPR032781 ABC-transporter extension domain BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Pfam PF00005 ABC transporter 331 464 6.9E-24 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 SMART SM00382 339 510 2.1E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 SMART SM00382 28 225 2.9E-17 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Gene3D G3DSA:1.10.287.380 552 631 4.0E-24 T 31-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 ProSitePatterns PS00211 ABC transporters family signature. 436 450 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Pfam PF16326 ABC transporter C-terminal domain 562 630 2.4E-21 T 31-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BRM88_14300 8907bce916ff9fc1ff47b0a2f6d9b2e1 631 Gene3D G3DSA:3.40.50.300 4 274 5.0E-64 T 31-10-2018 BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 SUPERFAMILY SSF56235 1 219 6.26E-64 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 Pfam PF00733 Asparagine synthase 263 634 7.7E-109 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 Pfam PF13537 Glutamine amidotransferase domain 52 171 4.3E-47 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 Gene3D G3DSA:3.60.20.10 9 187 1.8E-63 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 SUPERFAMILY SSF52402 252 630 2.19E-86 T 31-10-2018 BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 PIRSF PIRSF001589 1 646 2.9E-158 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BRM88_07870 7bb43315b7b25d583e127ce3ceb96565 646 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 570 9.3E-142 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BRM88_09670 c4a745a8ea77d38231110c97f266c35d 125 Pfam PF16137 Domain of unknown function (DUF4845) 29 113 1.3E-26 T 31-10-2018 IPR032314 Protein of unknown function DUF4845 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Pfam PF13840 ACT domain 328 389 3.0E-7 T 31-10-2018 IPR027795 CASTOR, ACT domain BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Pfam PF13840 ACT domain 409 469 1.6E-7 T 31-10-2018 IPR027795 CASTOR, ACT domain BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 ProSitePatterns PS00324 Aspartokinase signature. 22 30 - T 31-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Pfam PF00696 Amino acid kinase family 20 300 1.1E-43 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Gene3D G3DSA:3.30.2130.10 318 475 9.0E-46 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Pfam PF00742 Homoserine dehydrogenase 629 825 3.4E-50 T 31-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 SUPERFAMILY SSF55021 320 396 1.02E-19 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 487 621 8.7E-22 T 31-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 SUPERFAMILY SSF51735 479 651 6.26E-34 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 PIRSF PIRSF000727 20 832 0.0 T 31-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Gene3D G3DSA:3.30.360.10 640 810 6.3E-123 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 20 474 3.1E-106 T 31-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Gene3D G3DSA:3.40.50.720 482 828 6.3E-123 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 Gene3D G3DSA:3.40.1160.10 19 314 2.1E-89 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 SUPERFAMILY SSF55021 402 488 4.58E-21 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 SUPERFAMILY SSF53633 21 313 2.71E-73 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 SUPERFAMILY SSF55347 629 812 4.18E-48 T 31-10-2018 BRM88_11680 3a8d70d70dbf2282d9ce8e4179f83b8a 835 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 675 697 - T 31-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 SUPERFAMILY SSF51306 88 210 5.58E-33 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 135 1.5E-8 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 164 176 1.5E-8 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 136 147 1.5E-8 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 Pfam PF00717 Peptidase S24-like 128 193 2.7E-14 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 Gene3D G3DSA:1.10.10.10 1 68 1.4E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 Pfam PF01726 LexA DNA binding domain 2 64 1.2E-18 T 31-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 Gene3D G3DSA:2.10.109.10 94 212 1.2E-34 T 31-10-2018 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 TIGRFAM TIGR00498 lexA: repressor LexA 2 211 1.7E-52 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 SUPERFAMILY SSF46785 1 68 3.84E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_15690 d3146087bac1e48693f8b0b9e4fa473f 213 Hamap MF_00015 LexA repressor [lexA]. 2 212 29.807 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BRM88_06645 560b90de5098a212b20812a6cfe7c556 205 PIRSF PIRSF020606 1 205 4.6E-49 T 31-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 BRM88_06645 560b90de5098a212b20812a6cfe7c556 205 Pfam PF09997 Predicted membrane protein (DUF2238) 37 186 1.2E-47 T 31-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 BRM88_18950 bfc32a52cf1966e383f4382e65a298c8 231 SMART SM00990 73 186 8.1E-16 T 31-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 BRM88_18950 bfc32a52cf1966e383f4382e65a298c8 231 Pfam PF08774 VRR-NUC domain 89 176 1.3E-7 T 31-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 40 7.4E-9 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.227 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 SUPERFAMILY SSF57840 1 40 8.24E-14 T 31-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 40 0.006 T 31-10-2018 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_11355 df2c3f277ab4e7ab89b585ac5b3153a1 41 Pfam PF00444 Ribosomal protein L36 1 40 2.1E-17 T 31-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Pfam PF01966 HD domain 231 333 1.9E-5 T 31-10-2018 IPR006674 HD domain BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Pfam PF01743 Poly A polymerase head domain 3 123 2.5E-18 T 31-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Gene3D G3DSA:1.10.3090.10 123 408 5.4E-45 T 31-10-2018 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 PIRSF PIRSF000813 1 410 4.0E-192 T 31-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 409 51.871 T 31-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 150 213 1.3E-13 T 31-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 SUPERFAMILY SSF81301 1 120 1.31E-28 T 31-10-2018 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 SUPERFAMILY SSF81891 121 403 7.72E-55 T 31-10-2018 BRM88_20820 b3e011ffcec330f6bc76ec0da6fdb488 410 Gene3D G3DSA:3.30.460.10 1 122 1.3E-28 T 31-10-2018 BRM88_12720 b14fb434bc0db1bdacd16b463934078e 285 SUPERFAMILY SSF53187 5 268 2.72E-78 T 31-10-2018 BRM88_12720 b14fb434bc0db1bdacd16b463934078e 285 Gene3D G3DSA:3.40.630.40 3 250 4.9E-68 T 31-10-2018 BRM88_12720 b14fb434bc0db1bdacd16b463934078e 285 Pfam PF05013 N-formylglutamate amidohydrolase 15 233 7.9E-67 T 31-10-2018 IPR007709 N-formylglutamate amidohydrolase BRM88_12720 b14fb434bc0db1bdacd16b463934078e 285 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 6 272 5.3E-130 T 31-10-2018 IPR010247 N-formylglutamate deformylase BRM88_13515 6766682053e74b6bcbb23f23aa71d070 214 Gene3D G3DSA:3.90.1210.10 87 154 5.9E-23 T 31-10-2018 BRM88_13515 6766682053e74b6bcbb23f23aa71d070 214 Gene3D G3DSA:2.30.30.760 155 214 8.7E-12 T 31-10-2018 BRM88_13515 6766682053e74b6bcbb23f23aa71d070 214 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 77 212 2.9E-41 T 31-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BRM88_13515 6766682053e74b6bcbb23f23aa71d070 214 Pfam PF13144 Chaperone for flagella basal body P-ring formation 58 212 6.5E-42 T 31-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BRM88_13515 6766682053e74b6bcbb23f23aa71d070 214 SMART SM00858 89 151 3.6E-8 T 31-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 BRM88_05820 12163d4dc80abe0ed76e787837d6b876 199 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 51.002 T 31-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 BRM88_05820 12163d4dc80abe0ed76e787837d6b876 199 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 4 194 6.2E-53 T 31-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BRM88_05820 12163d4dc80abe0ed76e787837d6b876 199 Gene3D G3DSA:3.90.950.10 1 197 2.9E-72 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_05820 12163d4dc80abe0ed76e787837d6b876 199 Pfam PF01725 Ham1 family 4 191 5.3E-52 T 31-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BRM88_05820 12163d4dc80abe0ed76e787837d6b876 199 SUPERFAMILY SSF52972 1 194 9.16E-70 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 176 2.2E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 SUPERFAMILY SSF56935 46 713 2.44E-103 T 31-10-2018 BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 Pfam PF00593 TonB dependent receptor 258 712 4.0E-41 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 69 713 2.0E-79 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 Gene3D G3DSA:2.40.170.20 191 713 3.3E-105 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_06970 edf3e5496626d6bc5322e0732b0fbf66 713 Gene3D G3DSA:2.170.130.10 63 185 9.2E-26 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_01130 dab02eee746adeb8f072cea12d85e801 301 Gene3D G3DSA:2.60.120.330 45 228 2.5E-43 T 31-10-2018 IPR027443 Isopenicillin N synthase-like BRM88_01130 dab02eee746adeb8f072cea12d85e801 301 SUPERFAMILY SSF51197 81 230 2.75E-21 T 31-10-2018 BRM88_01130 dab02eee746adeb8f072cea12d85e801 301 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 224 3.9E-48 T 31-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 Gene3D G3DSA:1.10.287.130 158 276 2.8E-15 T 31-10-2018 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 SMART SM00388 212 278 4.5E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 Gene3D G3DSA:3.30.565.10 282 423 7.7E-20 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 SMART SM00387 323 426 2.0E-13 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 422 3.3E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 Pfam PF00512 His Kinase A (phospho-acceptor) domain 214 275 1.8E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 SUPERFAMILY SSF55874 287 422 4.85E-21 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 SUPERFAMILY SSF47384 195 274 1.55E-12 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 2.6E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 2.6E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_18875 201859117ea6a1f6a1afb8fc406db4c5 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 2.6E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PIRSF PIRSF038928 20 496 5.1E-177 T 31-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 ProSitePatterns PS00438 Catalase proximal active site signature. 64 80 - T 31-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 Gene3D G3DSA:2.40.180.10 24 507 3.9E-218 T 31-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 Pfam PF06628 Catalase-related immune-responsive 430 488 9.6E-15 T 31-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 Pfam PF00199 Catalase 28 405 3.3E-166 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 351 359 - T 31-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 338 364 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 306 333 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 124 141 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 41 64 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 103 121 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 PRINTS PR00067 Catalase signature 143 161 4.7E-68 T 31-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 SMART SM01060 28 408 5.8E-247 T 31-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_02020 abf47dd51f6a9b28979adbda3e7964ab 507 SUPERFAMILY SSF56634 23 495 9.55E-191 T 31-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 4 451 40.734 T 31-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 SUPERFAMILY SSF53448 5 250 3.03E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Gene3D G3DSA:2.160.10.10 228 454 3.2E-63 T 31-10-2018 BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Pfam PF12804 MobA-like NTP transferase domain 7 129 4.7E-23 T 31-10-2018 IPR025877 MobA-like NTP transferase BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 454 1.2E-185 T 31-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 317 348 1.7E-4 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 298 6.7E-6 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Gene3D G3DSA:3.90.550.10 4 226 1.6E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 SUPERFAMILY SSF51161 255 436 9.98E-48 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_03685 35eb1f7a118defde77fd4a6e18207cfa 454 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 394 428 2.7E-8 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10540 3eeb89998a9e0e1085951845a21f11bc 136 Pfam PF01475 Ferric uptake regulator family 9 129 2.5E-42 T 31-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BRM88_10540 3eeb89998a9e0e1085951845a21f11bc 136 Gene3D G3DSA:3.30.1490.190 85 136 8.2E-17 T 31-10-2018 BRM88_10540 3eeb89998a9e0e1085951845a21f11bc 136 SUPERFAMILY SSF46785 6 131 3.84E-38 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_10540 3eeb89998a9e0e1085951845a21f11bc 136 Gene3D G3DSA:1.10.10.10 1 82 4.1E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Gene3D G3DSA:3.40.50.10730 140 347 4.6E-254 T 31-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Hamap MF_00577 Urocanate hydratase [hutU]. 3 554 49.717 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Pfam PF01175 Urocanase Rossmann-like domain 139 347 3.0E-83 T 31-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Pfam PF17391 Urocanase N-terminal domain 10 136 3.7E-60 T 31-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 SUPERFAMILY SSF111326 4 552 7.06E-257 T 31-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 ProSitePatterns PS01233 Urocanase signature. 440 455 - T 31-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 TIGRFAM TIGR01228 hutU: urocanate hydratase 9 551 1.7E-283 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 PIRSF PIRSF001423 1 554 6.2E-286 T 31-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Pfam PF17392 Urocanase C-terminal domain 350 544 2.9E-92 T 31-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12725 870f57c7397f20b6d3c04188f5e402f8 555 Gene3D G3DSA:3.40.1770.10 15 540 4.6E-254 T 31-10-2018 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 3 514 49.925 T 31-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 SUPERFAMILY SSF47917 385 512 1.36E-46 T 31-10-2018 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 151 377 1.8E-72 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 SUPERFAMILY SSF50615 12 96 1.06E-25 T 31-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 94 1.3E-11 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 5 512 6.0E-248 T 31-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 SUPERFAMILY SSF52540 98 383 1.95E-95 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Gene3D G3DSA:3.40.50.300 96 384 3.3E-130 T 31-10-2018 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Gene3D G3DSA:2.40.30.20 3 95 8.1E-30 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Gene3D G3DSA:1.20.150.20 385 515 2.5E-48 T 31-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 384 509 3.6E-45 T 31-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03650 848ae7410aad19528affa3c83227faa2 515 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 368 377 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Gene3D G3DSA:3.40.1060.10 385 684 6.7E-150 T 31-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Pfam PF00330 Aconitase family (aconitate hydratase) 475 817 7.6E-40 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Gene3D G3DSA:3.30.499.10 405 532 6.7E-150 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 SUPERFAMILY SSF53732 380 856 2.09E-145 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Gene3D G3DSA:3.30.499.10 686 863 1.0E-63 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Pfam PF11791 Aconitate B N-terminal domain 4 156 6.8E-64 T 31-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 SUPERFAMILY SSF52016 162 372 1.65E-64 T 31-10-2018 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 SUPERFAMILY SSF74778 1 160 5.62E-66 T 31-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Gene3D G3DSA:3.20.19.10 162 361 3.1E-68 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 4.7E-94 T 31-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 Gene3D G3DSA:1.25.40.310 1 161 5.4E-67 T 31-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 PIRSF PIRSF036687 1 861 0.0 T 31-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_15260 8701c271e00d943e41ac866714fdc824 863 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 856 0.0 T 31-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 BRM88_12920 af7f829a04554094ce2c99aa78123789 175 Gene3D G3DSA:3.40.50.1820 1 175 2.3E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_12920 af7f829a04554094ce2c99aa78123789 175 Pfam PF05728 Uncharacterised protein family (UPF0227) 10 97 4.8E-5 T 31-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA BRM88_12920 af7f829a04554094ce2c99aa78123789 175 SUPERFAMILY SSF53474 4 173 4.65E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_17375 632fc55822f213a20f41bc166dc82492 322 Pfam PF03466 LysR substrate binding domain 95 293 2.0E-21 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_17375 632fc55822f213a20f41bc166dc82492 322 Gene3D G3DSA:3.40.190.10 103 289 8.1E-40 T 31-10-2018 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 Gene3D G3DSA:3.40.190.10 164 264 8.1E-40 T 31-10-2018 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.9E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 SUPERFAMILY SSF46785 3 86 1.21E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_17375 632fc55822f213a20f41bc166dc82492 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 6.0E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_17375 632fc55822f213a20f41bc166dc82492 322 Gene3D G3DSA:1.10.10.10 7 94 1.5E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_17375 632fc55822f213a20f41bc166dc82492 322 SUPERFAMILY SSF53850 95 296 2.17E-25 T 31-10-2018 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 TIGRFAM TIGR01068 thioredoxin: thioredoxin 10 107 7.0E-38 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 Gene3D G3DSA:3.40.30.10 1 108 1.5E-35 T 31-10-2018 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 PIRSF PIRSF000077 2 108 1.0E-41 T 31-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 SUPERFAMILY SSF52833 3 109 2.81E-40 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 Pfam PF00085 Thioredoxin 5 106 4.2E-32 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 PRINTS PR00421 Thioredoxin family signature 24 32 4.1E-8 T 31-10-2018 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 PRINTS PR00421 Thioredoxin family signature 32 41 4.1E-8 T 31-10-2018 BRM88_22870 be40aa096acd41b505fb5b542bc271d4 113 PRINTS PR00421 Thioredoxin family signature 72 83 4.1E-8 T 31-10-2018 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 80 92 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 41 54 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 115 135 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 221 235 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 240 263 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PRINTS PR00996 Glutamate methyltransferase family signature 149 165 1.3E-38 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 70 3.0E-18 T 31-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 Gene3D G3DSA:1.10.155.10 9 85 1.0E-27 T 31-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 Gene3D G3DSA:3.40.50.150 86 281 9.0E-58 T 31-10-2018 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 SUPERFAMILY SSF47757 11 86 9.02E-24 T 31-10-2018 BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 Pfam PF01739 CheR methyltransferase, SAM binding domain 87 271 1.5E-48 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 PIRSF PIRSF000410 1 282 8.4E-89 T 31-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 SUPERFAMILY SSF53335 87 278 6.14E-48 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_15225 2bf31d799eed71806ae86471662c46c5 288 SMART SM00138 19 281 2.7E-86 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 279 293 - T 31-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Gene3D G3DSA:3.50.50.60 2 241 1.3E-83 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Gene3D G3DSA:3.50.50.60 311 464 5.9E-55 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 374 397 - T 31-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Pfam PF13932 GidA associated domain 409 622 1.0E-71 T 31-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 627 2.1E-264 T 31-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 SUPERFAMILY SSF51905 8 267 6.94E-44 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Gene3D G3DSA:1.10.150.570 576 627 1.8E-22 T 31-10-2018 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Pfam PF01134 Glucose inhibited division protein A 9 403 1.2E-159 T 31-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Gene3D G3DSA:1.10.10.1800 465 556 4.9E-25 T 31-10-2018 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 630 41.411 T 31-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BRM88_01100 bfa6d70fbe801c70ac2a8cca071f6f89 634 SMART SM01228 552 623 7.3E-41 T 31-10-2018 BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SMART SM00052 358 600 1.0E-10 T 31-10-2018 IPR001633 EAL domain BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Pfam PF00072 Response regulator receiver domain 66 177 3.2E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Pfam PF00563 EAL domain 368 592 1.4E-35 T 31-10-2018 IPR001633 EAL domain BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SMART SM00448 64 177 2.4E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Gene3D G3DSA:3.30.70.270 202 367 8.0E-14 T 31-10-2018 BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SMART SM00267 189 354 3.0E-5 T 31-10-2018 IPR000160 GGDEF domain BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Gene3D G3DSA:3.20.20.450 368 603 2.3E-41 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SUPERFAMILY SSF52172 62 188 1.28E-32 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Gene3D G3DSA:3.40.50.2300 51 196 1.5E-31 T 31-10-2018 BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SUPERFAMILY SSF55073 204 347 7.38E-11 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 Pfam PF00990 Diguanylate cyclase, GGDEF domain 213 338 5.2E-6 T 31-10-2018 IPR000160 GGDEF domain BRM88_02620 e9b088aac958ace5aa04108d742099b5 608 SUPERFAMILY SSF141868 368 592 2.35E-35 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 SMART SM00387 107 216 3.7E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 107 213 4.9E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 200 213 2.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 176 194 2.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 PRINTS PR00344 Bacterial sensor protein C-terminal signature 141 155 2.3E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 SMART SM00388 11 68 7.8E-4 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 SUPERFAMILY SSF47384 5 66 7.65E-8 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 Gene3D G3DSA:3.30.565.10 69 214 1.7E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 Gene3D G3DSA:1.10.287.130 1 64 4.3E-12 T 31-10-2018 BRM88_20695 4542bca06693fb0a17ea455bb994a363 219 SUPERFAMILY SSF55874 64 214 5.02E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_11570 4d83570cfa74417c9707963527eb44e5 403 SUPERFAMILY SSF51905 29 393 1.68E-33 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_11570 4d83570cfa74417c9707963527eb44e5 403 Pfam PF01266 FAD dependent oxidoreductase 31 380 2.9E-46 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_11570 4d83570cfa74417c9707963527eb44e5 403 Gene3D G3DSA:3.50.50.60 31 383 8.8E-61 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_11570 4d83570cfa74417c9707963527eb44e5 403 Gene3D G3DSA:3.30.9.10 122 344 8.8E-61 T 31-10-2018 BRM88_00375 7f1b68da58f046fed00220ba2433549e 542 SUPERFAMILY SSF55073 386 539 2.51E-42 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_00375 7f1b68da58f046fed00220ba2433549e 542 Pfam PF00990 Diguanylate cyclase, GGDEF domain 384 537 7.6E-35 T 31-10-2018 IPR000160 GGDEF domain BRM88_00375 7f1b68da58f046fed00220ba2433549e 542 Gene3D G3DSA:3.30.70.270 367 540 6.2E-47 T 31-10-2018 BRM88_00375 7f1b68da58f046fed00220ba2433549e 542 SMART SM00267 370 541 1.6E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_00375 7f1b68da58f046fed00220ba2433549e 542 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 383 540 2.7E-38 T 31-10-2018 IPR000160 GGDEF domain BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 137 237 2.9E-41 T 31-10-2018 IPR012997 Rare lipoprotein A BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 Pfam PF05036 Sporulation related domain 396 469 2.1E-11 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 SUPERFAMILY SSF110997 398 468 4.58E-7 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 Gene3D G3DSA:2.40.40.10 134 227 2.6E-34 T 31-10-2018 IPR036908 RlpA-like domain superfamily BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 SUPERFAMILY SSF50685 123 220 3.84E-10 T 31-10-2018 IPR036908 RlpA-like domain superfamily BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 18 227 24.018 T 31-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 BRM88_21115 97c28d803c12ca43d6da815aadb78189 471 Pfam PF03330 Lytic transglycolase 135 224 6.2E-24 T 31-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 297 5.6E-45 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 Gene3D G3DSA:2.40.50.100 81 223 1.6E-93 T 31-10-2018 BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 Gene3D G3DSA:1.10.287.470 115 185 1.6E-93 T 31-10-2018 BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 Gene3D G3DSA:2.40.420.20 55 362 1.6E-93 T 31-10-2018 BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 Gene3D G3DSA:2.40.30.170 67 303 1.6E-93 T 31-10-2018 BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 56 369 6.9E-54 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_12590 e5d1414dd3a070e523f0e5bdcb0f4f2e 371 SUPERFAMILY SSF111369 78 301 2.22E-25 T 31-10-2018 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Pfam PF14683 Polysaccharide lyase family 4, domain III 367 530 2.4E-34 T 31-10-2018 IPR029411 Rhamnogalacturonan lyase, domain III MetaCyc: PWY-6769|MetaCyc: PWY-6771 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 SUPERFAMILY SSF74650 27 267 1.1E-80 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Gene3D G3DSA:2.60.120.260 362 532 4.2E-59 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 SUPERFAMILY SSF49452 275 355 1.43E-10 T 31-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 SUPERFAMILY SSF49785 363 531 2.55E-51 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Pfam PF14686 Polysaccharide lyase family 4, domain II 286 352 4.0E-15 T 31-10-2018 IPR029413 Rhamnogalacturonan lyase, domain II MetaCyc: PWY-6769|MetaCyc: PWY-6771 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Gene3D G3DSA:2.60.40.1120 276 359 4.2E-24 T 31-10-2018 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Pfam PF09284 Rhamnogalacturonan lyase B, N-terminal 27 268 1.2E-86 T 31-10-2018 IPR015364 Rhamnogalacturonase B, N-terminal GO:0005975|GO:0016837|GO:0030246 MetaCyc: PWY-6769|MetaCyc: PWY-6771 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 PIRSF PIRSF011794 3 532 7.4E-242 T 31-10-2018 IPR016590 Rhamnogalacturonase B GO:0005975|GO:0016837 MetaCyc: PWY-6769|MetaCyc: PWY-6771 BRM88_05480 bfa2f19095dfaaa0e2920923fc1b3abd 533 Gene3D G3DSA:2.70.98.10 26 275 3.0E-90 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BRM88_10320 bf42b8665ca4ba3d4977d99c808cd3e8 241 SUPERFAMILY SSF49354 27 127 2.88E-14 T 31-10-2018 IPR008962 PapD-like superfamily BRM88_10320 bf42b8665ca4ba3d4977d99c808cd3e8 241 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 122 1.9E-8 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 760 791 2.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 590 621 1.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 522 553 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 556 587 4.7E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 386 417 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 318 349 2.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 794 823 1.8E-11 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 658 689 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 692 723 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 454 485 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 726 757 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 830 854 0.04 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 284 315 5.1E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 352 383 6.8E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 488 519 5.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 420 451 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11795 a4fbfefdd1aa7aec8728a2de4bd64ed1 1099 Pfam PF03377 TAL effector repeat 626 655 3.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 SUPERFAMILY SSF52540 338 717 1.15E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 8 565 7.1E-125 T 31-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Pfam PF13245 AAA domain 205 361 3.0E-30 T 31-10-2018 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 16 716 45.143 T 31-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Gene3D G3DSA:1.10.10.1020 1 116 2.8E-8 T 31-10-2018 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Pfam PF13538 UvrD-like helicase C-terminal domain 647 693 6.3E-15 T 31-10-2018 IPR027785 UvrD-like helicase C-terminal domain BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Gene3D G3DSA:3.40.50.300 608 707 9.0E-23 T 31-10-2018 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Gene3D G3DSA:3.40.50.300 430 537 7.4E-11 T 31-10-2018 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 Gene3D G3DSA:3.40.50.300 179 395 1.2E-57 T 31-10-2018 BRM88_23770 99e8b8d78677a563b59f75d73c5838bb 750 SUPERFAMILY SSF52540 8 424 5.01E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 PIRSF PIRSF000071 17 79 1.0E-23 T 31-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 SUPERFAMILY SSF57802 24 77 1.09E-21 T 31-10-2018 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 ProSitePatterns PS00202 Rubredoxin signature. 57 67 - T 31-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 PRINTS PR00163 Rubredoxin signature 57 73 3.0E-7 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 PRINTS PR00163 Rubredoxin signature 27 43 3.0E-7 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 Gene3D G3DSA:2.20.28.10 18 79 1.1E-27 T 31-10-2018 BRM88_05730 aed35b2779b8a9102698a8c292e608ec 79 Pfam PF00301 Rubredoxin 28 73 6.1E-21 T 31-10-2018 IPR024935 Rubredoxin domain GO:0005506 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 SUPERFAMILY SSF54862 450 548 2.2E-24 T 31-10-2018 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 Gene3D G3DSA:3.30.70.20 448 544 1.7E-35 T 31-10-2018 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 SUPERFAMILY SSF51905 18 421 1.33E-44 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 Pfam PF01946 Thi4 family 17 64 8.3E-7 T 31-10-2018 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 447 547 2.0E-43 T 31-10-2018 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 Gene3D G3DSA:3.50.50.60 20 385 8.5E-158 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 SUPERFAMILY SSF54373 218 311 4.32E-30 T 31-10-2018 BRM88_04015 d2f4d410a3f15fe745fb7f936dd729d6 549 Gene3D G3DSA:3.30.9.90 88 434 8.5E-158 T 31-10-2018 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Gene3D G3DSA:3.10.580.10 122 250 2.0E-36 T 31-10-2018 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 SUPERFAMILY SSF158791 12 122 3.01E-18 T 31-10-2018 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 SMART SM00924 22 125 6.4E-23 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 SUPERFAMILY SSF161093 273 450 2.09E-47 T 31-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Pfam PF03448 MgtE intracellular N domain 23 123 8.1E-20 T 31-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 SMART SM00116 198 246 1.1E-10 T 31-10-2018 IPR000644 CBS domain BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Gene3D G3DSA:1.10.357.20 265 451 7.0E-58 T 31-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 SUPERFAMILY SSF54631 124 266 7.34E-27 T 31-10-2018 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Pfam PF00571 CBS domain 195 245 7.8E-10 T 31-10-2018 IPR000644 CBS domain BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 TIGRFAM TIGR00400 mgtE: magnesium transporter 13 450 3.2E-101 T 31-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Gene3D G3DSA:1.25.60.10 6 120 1.3E-12 T 31-10-2018 IPR038076 MgtE, N-terminal domain superfamily BRM88_02350 b35f8241149100d3b22a461bdc8ce8e4 455 Pfam PF01769 Divalent cation transporter 313 443 1.5E-29 T 31-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BRM88_15525 61a192829a2307789a7683a226a507e9 382 Gene3D G3DSA:3.30.390.10 12 374 4.3E-141 T 31-10-2018 IPR029017 Enolase-like, N-terminal BRM88_15525 61a192829a2307789a7683a226a507e9 382 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 82 107 - T 31-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BRM88_15525 61a192829a2307789a7683a226a507e9 382 Pfam PF13378 Enolase C-terminal domain-like 130 355 4.2E-54 T 31-10-2018 IPR029065 Enolase C-terminal domain-like BRM88_15525 61a192829a2307789a7683a226a507e9 382 SMART SM00922 125 230 2.3E-17 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BRM88_15525 61a192829a2307789a7683a226a507e9 382 SUPERFAMILY SSF54826 1 112 4.88E-32 T 31-10-2018 BRM88_15525 61a192829a2307789a7683a226a507e9 382 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 180 211 - T 31-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BRM88_15525 61a192829a2307789a7683a226a507e9 382 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 7 107 3.7E-29 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BRM88_15525 61a192829a2307789a7683a226a507e9 382 SUPERFAMILY SSF51604 95 359 2.23E-71 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_15525 61a192829a2307789a7683a226a507e9 382 Gene3D G3DSA:3.20.20.120 102 344 4.3E-141 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_15525 61a192829a2307789a7683a226a507e9 382 Hamap MF_01289 D-galactonate dehydratase [dgoD]. 1 382 70.209 T 31-10-2018 IPR023592 D-galactonate dehydratase GO:0008869|GO:0034194 KEGG: 00052+4.2.1.6 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 179 465 1.5E-95 T 31-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 Gene3D G3DSA:3.40.50.720 5 422 1.1E-141 T 31-10-2018 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 Gene3D G3DSA:3.30.360.10 166 461 1.1E-141 T 31-10-2018 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 SUPERFAMILY SSF55347 171 466 1.01E-96 T 31-10-2018 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 6 176 6.4E-43 T 31-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 156 184 3.5E-40 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 132 145 3.5E-40 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 313 339 3.5E-40 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 208 225 3.5E-40 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 226 242 3.5E-40 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 2 467 68.502 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 SUPERFAMILY SSF51735 3 179 1.77E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 PIRSF PIRSF000110 1 476 2.4E-164 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_12235 67bfd766399d9eb3c575fa3b93882ed2 476 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 3 465 2.6E-136 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 Gene3D G3DSA:1.10.760.10 19 128 5.2E-31 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 PRINTS PR00604 Class IA and IB cytochrome C signature 52 67 4.2E-12 T 31-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 PRINTS PR00604 Class IA and IB cytochrome C signature 120 128 4.2E-12 T 31-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 PRINTS PR00604 Class IA and IB cytochrome C signature 83 99 4.2E-12 T 31-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 PRINTS PR00604 Class IA and IB cytochrome C signature 40 47 4.2E-12 T 31-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 PRINTS PR00604 Class IA and IB cytochrome C signature 103 113 4.2E-12 T 31-10-2018 IPR002327 Cytochrome c, class IA/ IB GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 SUPERFAMILY SSF46626 27 130 8.33E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16010 542c68e1210067f7cbe3f756e9117e50 130 Pfam PF00034 Cytochrome c 30 130 5.3E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 SUPERFAMILY SSF74653 144 220 8.24E-22 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 PRINTS PR01217 Proline rich extensin signature 84 101 1.9E-10 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 PRINTS PR01217 Proline rich extensin signature 46 67 1.9E-10 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 PRINTS PR01217 Proline rich extensin signature 67 83 1.9E-10 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 PRINTS PR01217 Proline rich extensin signature 104 129 1.9E-10 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 146 223 5.3E-25 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 Gene3D G3DSA:3.30.1150.10 125 223 2.0E-25 T 31-10-2018 BRM88_00045 6b9f7eb776341634cb1acebdc5d714ed 223 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 145 222 1.7E-22 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_24415 8d2db6f100f5d694e23ab0acafadce1b 393 PIRSF PIRSF028408 4 393 8.2E-69 T 31-10-2018 IPR014544 Uncharacterised conserved protein UCP028408 BRM88_24415 8d2db6f100f5d694e23ab0acafadce1b 393 Pfam PF11795 Uncharacterized protein conserved in bacteria N-term (DUF3322) 16 191 1.5E-44 T 31-10-2018 IPR024537 Domain of unknown function DUF3322 BRM88_24415 8d2db6f100f5d694e23ab0acafadce1b 393 Pfam PF09983 Uncharacterized protein conserved in bacteria C-term(DUF2220) 208 385 1.8E-50 T 31-10-2018 IPR024534 Domain of unknown function DUF2220 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Gene3D G3DSA:3.30.1360.40 236 332 1.6E-225 T 31-10-2018 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Gene3D G3DSA:1.10.268.10 369 492 1.6E-225 T 31-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 SUPERFAMILY SSF101904 532 880 4.05E-104 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 SUPERFAMILY SSF56719 30 520 1.96E-177 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 5.6E-10 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 579 6.8E-10 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 636 1.2E-10 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 737 6.1E-13 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 827 873 1.2E-11 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 777 822 1.4E-16 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 873 0.0 T 31-10-2018 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 SMART SM00434 11 498 1.5E-277 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 875 24.065 T 31-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Gene3D G3DSA:3.90.199.10 33 520 1.6E-225 T 31-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BRM88_12745 04af4617c7f4a06ddf11439c73c5e97b 898 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 505 3.1E-154 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_06665 66892030d0b4e9beeeb48c570345d3d3 388 Pfam PF01594 AI-2E family transporter 18 348 5.5E-59 T 31-10-2018 IPR002549 Transmembrane protein TqsA-like BRM88_22320 e9421741f65c613aba5229563c27f676 271 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 271 134.464 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BRM88_22320 e9421741f65c613aba5229563c27f676 271 SUPERFAMILY SSF55620 173 253 8.15E-9 T 31-10-2018 BRM88_22320 e9421741f65c613aba5229563c27f676 271 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 15 123 3.8E-44 T 31-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BRM88_22320 e9421741f65c613aba5229563c27f676 271 Gene3D G3DSA:3.30.1130.10 15 127 1.8E-40 T 31-10-2018 BRM88_22320 e9421741f65c613aba5229563c27f676 271 PIRSF PIRSF004750 1 271 2.0E-109 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BRM88_22320 e9421741f65c613aba5229563c27f676 271 TIGRFAM TIGR03138 QueF: queuine synthase 4 271 1.9E-110 T 31-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BRM88_22320 e9421741f65c613aba5229563c27f676 271 Gene3D G3DSA:3.30.1130.10 132 271 7.6E-51 T 31-10-2018 BRM88_22320 e9421741f65c613aba5229563c27f676 271 Pfam PF14489 QueF-like protein 183 255 3.8E-26 T 31-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BRM88_01400 826363de043c0880473302ebcaab73e5 720 Gene3D G3DSA:2.70.98.10 421 720 1.1E-70 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BRM88_01400 826363de043c0880473302ebcaab73e5 720 Gene3D G3DSA:1.10.101.10 336 401 6.9E-8 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BRM88_01400 826363de043c0880473302ebcaab73e5 720 SUPERFAMILY SSF74650 440 717 1.07E-61 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_01400 826363de043c0880473302ebcaab73e5 720 Pfam PF13406 Transglycosylase SLT domain 25 320 7.5E-99 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 BRM88_01400 826363de043c0880473302ebcaab73e5 720 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 24 323 3.2E-112 T 31-10-2018 IPR011970 Lytic murein transglycosylase BRM88_01400 826363de043c0880473302ebcaab73e5 720 SUPERFAMILY SSF47090 327 398 8.63E-14 T 31-10-2018 IPR036365 PGBD-like superfamily BRM88_01400 826363de043c0880473302ebcaab73e5 720 SUPERFAMILY SSF53955 10 326 9.75E-94 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_01400 826363de043c0880473302ebcaab73e5 720 Gene3D G3DSA:1.10.530.10 67 319 6.1E-76 T 31-10-2018 BRM88_01400 826363de043c0880473302ebcaab73e5 720 Gene3D G3DSA:1.10.8.350 35 200 6.1E-76 T 31-10-2018 BRM88_01400 826363de043c0880473302ebcaab73e5 720 Pfam PF01471 Putative peptidoglycan binding domain 342 397 6.1E-8 T 31-10-2018 IPR002477 Peptidoglycan binding-like BRM88_01400 826363de043c0880473302ebcaab73e5 720 Pfam PF01263 Aldose 1-epimerase 455 717 1.5E-39 T 31-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BRM88_17340 8f67e9861d1beb9e418cf280fa07a801 224 Gene3D G3DSA:2.60.40.420 41 136 1.0E-10 T 31-10-2018 IPR008972 Cupredoxin BRM88_17340 8f67e9861d1beb9e418cf280fa07a801 224 SUPERFAMILY SSF49464 118 175 5.89E-6 T 31-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily BRM88_17340 8f67e9861d1beb9e418cf280fa07a801 224 SUPERFAMILY SSF49503 44 136 2.53E-15 T 31-10-2018 IPR008972 Cupredoxin BRM88_09700 ba1afad7bfb8930983a6a56c906237f4 165 PIRSF PIRSF016487 1 165 2.6E-62 T 31-10-2018 IPR012042 Inorganic triphosphatase NeuTTM/CthTTM-like BRM88_09700 ba1afad7bfb8930983a6a56c906237f4 165 SMART SM01118 2 155 2.9E-20 T 31-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BRM88_09700 ba1afad7bfb8930983a6a56c906237f4 165 Pfam PF01928 CYTH domain 4 143 1.2E-15 T 31-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BRM88_09700 ba1afad7bfb8930983a6a56c906237f4 165 SUPERFAMILY SSF55154 1 155 3.6E-41 T 31-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 BRM88_09700 ba1afad7bfb8930983a6a56c906237f4 165 Gene3D G3DSA:2.40.320.10 1 157 3.7E-45 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Gene3D G3DSA:3.55.50.10 108 209 2.0E-71 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Gene3D G3DSA:2.40.50.230 415 519 5.9E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 SUPERFAMILY SSF69279 27 204 3.57E-45 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 SUPERFAMILY SSF69255 421 515 1.57E-24 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 32 520 2.6E-71 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Gene3D G3DSA:2.30.110.50 27 353 2.0E-71 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Gene3D G3DSA:3.30.1920.30 245 308 2.0E-71 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Pfam PF05954 Phage late control gene D protein (GPD) 40 355 1.4E-72 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 585 689 5.3E-33 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 SUPERFAMILY SSF69279 230 410 1.12E-9 T 31-10-2018 BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 750 906 3.3E-33 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_18740 0968a38a120fd12d359bad38cfd72368 938 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 32 519 1.4E-83 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 469 1.0E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 SUPERFAMILY SSF55874 306 468 1.96E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 SMART SM00388 256 313 0.0079 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 448 2.9E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 Gene3D G3DSA:3.30.565.10 317 469 2.7E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 Gene3D G3DSA:1.10.287.130 203 307 9.9E-11 T 31-10-2018 BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 SMART SM00387 358 471 1.6E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_02060 f5dc2364ff22114004598dc9d3e4cab8 471 SUPERFAMILY SSF47384 239 304 1.47E-5 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_13590 599a4e95a636d449ed3eea122b4b0586 441 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 214 429 6.1E-48 T 31-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 BRM88_13590 599a4e95a636d449ed3eea122b4b0586 441 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 107 2.4E-17 T 31-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 BRM88_13590 599a4e95a636d449ed3eea122b4b0586 441 Pfam PF07196 Flagellin hook IN motif 124 177 5.2E-8 T 31-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Gene3D G3DSA:1.10.8.60 295 368 2.2E-11 T 31-10-2018 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 151 164 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 390 407 4.6E-6 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 407 426 4.6E-6 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 SMART SM00382 147 287 1.4E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_03235 25e562192f397183e06a56528a1b2b03 426 SUPERFAMILY SSF46689 375 422 5.26E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 SUPERFAMILY SSF52172 1 172 4.7E-26 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_03235 25e562192f397183e06a56528a1b2b03 426 SMART SM00448 4 114 7.2E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 SUPERFAMILY SSF52540 126 367 4.75E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Pfam PF02954 Bacterial regulatory protein, Fis family 384 421 2.3E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Pfam PF00072 Response regulator receiver domain 8 112 2.1E-15 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 212 227 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Gene3D G3DSA:3.40.50.300 121 294 1.4E-55 T 31-10-2018 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Gene3D G3DSA:3.40.50.2300 1 120 5.2E-18 T 31-10-2018 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Pfam PF00158 Sigma-54 interaction domain 127 291 2.8E-60 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_03235 25e562192f397183e06a56528a1b2b03 426 Gene3D G3DSA:1.10.10.60 369 424 2.1E-10 T 31-10-2018 BRM88_20415 4a6ee2d142af82d14a6ec50ce3da2461 361 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 359 24.603 T 31-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20415 4a6ee2d142af82d14a6ec50ce3da2461 361 ProSitePatterns PS01348 MraY family signature 2. 190 201 - T 31-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20415 4a6ee2d142af82d14a6ec50ce3da2461 361 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 361 2.7E-130 T 31-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20415 4a6ee2d142af82d14a6ec50ce3da2461 361 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 31-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20415 4a6ee2d142af82d14a6ec50ce3da2461 361 Pfam PF00953 Glycosyl transferase family 4 99 285 1.8E-33 T 31-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BRM88_13055 0dc5b438f6139c908192f2763e513765 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.5E-89 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_13055 0dc5b438f6139c908192f2763e513765 439 SUPERFAMILY SSF53098 18 403 2.88E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 1.7E-89 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 Pfam PF01578 Cytochrome C assembly protein 89 295 4.8E-51 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 636 7.6E-218 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 634 2.1E-115 T 31-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 627 640 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 313 328 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16050 0422aa2fbb9e99c71adb0ba6577475bc 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 1.1E-53 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 Gene3D G3DSA:3.40.50.1980 31 232 4.9E-119 T 31-10-2018 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PIRSF PIRSF000099 1 429 3.0E-158 T 31-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 427 40.472 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 426 4.8E-159 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 31-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 Gene3D G3DSA:3.40.50.1980 234 349 4.9E-119 T 31-10-2018 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 Pfam PF00815 Histidinol dehydrogenase 26 427 2.4E-161 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 SUPERFAMILY SSF53720 6 427 1.16E-78 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 361 379 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_11740 5aa77337620bb8c9bf166fefc65a31f4 431 PRINTS PR00083 Histidinol dehydrogenase signature 320 345 2.5E-92 T 31-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 64 408 4.8E-51 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 Gene3D G3DSA:1.10.287.470 134 200 2.0E-48 T 31-10-2018 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 Gene3D G3DSA:2.40.50.100 88 249 2.0E-48 T 31-10-2018 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 Gene3D G3DSA:2.40.420.20 332 414 1.8E-11 T 31-10-2018 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 80 320 1.5E-19 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 SUPERFAMILY SSF111369 78 325 1.57E-23 T 31-10-2018 BRM88_00725 d9d9ff4eb2a39dfafa1f0d51c295786a 415 Gene3D G3DSA:2.40.30.170 250 324 2.0E-48 T 31-10-2018 BRM88_23945 ed3be70495c40e7fc28419e8e7fcf632 328 TIGRFAM TIGR03438 egtD_ergothio: dimethylhistidine N-methyltransferase 25 324 1.1E-116 T 31-10-2018 IPR035094 Histidine N-alpha-methyltransferase KEGG: 00340+2.1.1.44|MetaCyc: PWY-7255|MetaCyc: PWY-7550 BRM88_23945 ed3be70495c40e7fc28419e8e7fcf632 328 PIRSF PIRSF018005 1 328 1.2E-133 T 31-10-2018 IPR017804 Methyltransferase EgtD-like GO:0008168 BRM88_23945 ed3be70495c40e7fc28419e8e7fcf632 328 Gene3D G3DSA:3.40.50.150 52 231 1.5E-42 T 31-10-2018 BRM88_23945 ed3be70495c40e7fc28419e8e7fcf632 328 Pfam PF10017 Histidine-specific methyltransferase, SAM-dependent 26 326 1.7E-99 T 31-10-2018 IPR019257 Histidine-specific methyltransferase, SAM-dependent BRM88_23945 ed3be70495c40e7fc28419e8e7fcf632 328 SUPERFAMILY SSF53335 23 320 3.05E-8 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_07785 d57f2d3e383f296720d045ad5a5a5fef 152 SUPERFAMILY SSF51182 35 150 1.13E-27 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_07785 d57f2d3e383f296720d045ad5a5a5fef 152 Gene3D G3DSA:2.60.120.10 25 152 1.4E-45 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_07785 d57f2d3e383f296720d045ad5a5a5fef 152 Pfam PF07883 Cupin domain 65 128 4.7E-12 T 31-10-2018 IPR013096 Cupin 2, conserved barrel BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SUPERFAMILY SSF54980 617 703 1.92E-28 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SUPERFAMILY SSF54980 409 486 5.76E-26 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Gene3D G3DSA:3.40.50.300 1 298 1.7E-115 T 31-10-2018 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Gene3D G3DSA:3.30.70.240 618 688 4.3E-83 T 31-10-2018 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Gene3D G3DSA:2.40.30.10 299 405 2.2E-44 T 31-10-2018 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SUPERFAMILY SSF54211 484 613 9.1E-40 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SUPERFAMILY SSF50447 255 407 1.19E-35 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Pfam PF03764 Elongation factor G, domain IV 484 612 2.8E-42 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Pfam PF00679 Elongation factor G C-terminus 614 700 8.3E-29 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Hamap MF_00054_B Elongation factor G [fusA]. 6 705 110.44 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.2E-65 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SUPERFAMILY SSF52540 6 288 2.15E-107 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SMART SM00889 485 612 3.3E-68 T 31-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Pfam PF03144 Elongation factor Tu domain 2 329 396 1.8E-18 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.8E-15 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.8E-15 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.8E-15 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.8E-15 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.8E-15 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 704 0.0 T 31-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 186 2.8E-32 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Gene3D G3DSA:3.30.230.10 489 700 4.3E-83 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Pfam PF14492 Elongation Factor G, domain II 409 483 3.2E-35 T 31-10-2018 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 Gene3D G3DSA:3.30.70.870 410 485 2.4E-34 T 31-10-2018 BRM88_19140 4d7bd5d5e6aa35dc05fbce157bf2e380 705 SMART SM00838 614 701 4.3E-54 T 31-10-2018 IPR000640 Elongation factor EFG, domain V-like BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 SUPERFAMILY SSF51905 136 516 1.09E-60 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 307 325 1.0E-39 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 157 1.0E-39 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 428 450 1.0E-39 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 399 415 1.0E-39 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 286 1.0E-39 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 185 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 443 450 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 280 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 565 585 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 478 499 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 400 414 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 543 558 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 159 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 332 4.0E-69 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Gene3D G3DSA:3.50.50.60 138 468 3.1E-116 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 PIRSF PIRSF000350 73 603 8.8E-85 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 482 590 3.4E-35 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Gene3D G3DSA:3.30.390.30 481 602 4.5E-44 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 171 181 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Gene3D G3DSA:3.50.50.60 283 409 3.1E-116 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 SUPERFAMILY SSF51230 2 95 1.31E-22 T 31-10-2018 IPR011053 Single hybrid motif BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Gene3D G3DSA:2.40.50.100 2 82 2.8E-19 T 31-10-2018 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 137 594 2.0E-152 T 31-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Pfam PF00364 Biotin-requiring enzyme 5 74 2.9E-19 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 137 463 1.4E-67 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_03610 8501723f7d4f4e0052831d05168e9301 607 SUPERFAMILY SSF55424 480 601 5.67E-39 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BRM88_00030 b2a41d31802c0dcae8c490bb2155cdab 278 Pfam PF02517 CAAX protease self-immunity 168 266 3.5E-18 T 31-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 18 316 37.362 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 SUPERFAMILY SSF53335 18 316 2.04E-43 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 Gene3D G3DSA:1.10.150.170 121 223 9.8E-99 T 31-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 Pfam PF01795 MraW methylase family 17 315 1.3E-99 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 PIRSF PIRSF004486 12 317 2.9E-98 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 17 315 1.9E-99 T 31-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 SUPERFAMILY SSF81799 123 222 9.68E-34 T 31-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BRM88_20440 3f96170b919703ee3f39fa82d86bae87 347 Gene3D G3DSA:3.40.50.150 21 315 9.8E-99 T 31-10-2018 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 Pfam PF07969 Amidohydrolase family 112 378 8.1E-13 T 31-10-2018 IPR013108 Amidohydrolase 3 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 SUPERFAMILY SSF51556 64 361 1.31E-82 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 Hamap MF_00372 Imidazolonepropionase [hutI]. 4 401 41.27 T 31-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 Gene3D G3DSA:3.20.20.140 65 361 6.1E-169 T 31-10-2018 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 SUPERFAMILY SSF51338 2 400 9.43E-31 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 Gene3D G3DSA:2.30.40.10 9 398 6.1E-169 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_12710 e5c9362ee3430cf86294386ca2d2973e 401 TIGRFAM TIGR01224 hutI: imidazolonepropionase 26 399 6.7E-138 T 31-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_01850 6d2d732389db658ac68c591d18843aad 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 6.9E-22 T 31-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BRM88_01850 6d2d732389db658ac68c591d18843aad 90 Gene3D G3DSA:1.20.58.1000 1 90 1.8E-25 T 31-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 Pfam PF00171 Aldehyde dehydrogenase family 10 287 3.9E-12 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 320 341 - T 31-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 Gene3D G3DSA:3.40.605.10 15 408 1.7E-157 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 SUPERFAMILY SSF53720 6 413 6.81E-110 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 401 8.2E-138 T 31-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 PIRSF PIRSF000151 1 414 1.6E-172 T 31-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 Gene3D G3DSA:3.40.309.10 223 371 1.7E-157 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_14040 2a14385fd24193e4046eeaf61c4e55eb 414 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 413 41.355 T 31-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BRM88_23310 56a4a32c53bd6381c208b27009f34f6c 172 SUPERFAMILY SSF46626 54 169 1.86E-16 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_23310 56a4a32c53bd6381c208b27009f34f6c 172 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 90 167 1.0E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_23310 56a4a32c53bd6381c208b27009f34f6c 172 Gene3D G3DSA:1.10.760.10 85 172 3.3E-26 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_14020 8a8a1058454b12d0795773777645419b 36 Pfam PF08173 Membrane bound YbgT-like protein 2 27 1.3E-13 T 31-10-2018 IPR012994 Membrane bound YbgT-like BRM88_14020 8a8a1058454b12d0795773777645419b 36 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 2 28 4.3E-18 T 31-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 BRM88_22460 1a282765f333f69e950855283b352f84 338 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 117 195 1.1E-7 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_22460 1a282765f333f69e950855283b352f84 338 Gene3D G3DSA:3.40.47.10 1 198 1.1E-74 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_22460 1a282765f333f69e950855283b352f84 338 Gene3D G3DSA:3.40.47.10 199 338 5.6E-35 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_22460 1a282765f333f69e950855283b352f84 338 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 253 333 1.7E-18 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_22460 1a282765f333f69e950855283b352f84 338 SUPERFAMILY SSF53901 46 338 6.78E-40 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_11655 07c6ce3709fedbfbf22915cf57b6ec93 257 Gene3D G3DSA:3.40.50.150 10 230 2.4E-30 T 31-10-2018 BRM88_11655 07c6ce3709fedbfbf22915cf57b6ec93 257 Pfam PF08241 Methyltransferase domain 48 139 1.8E-13 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BRM88_11655 07c6ce3709fedbfbf22915cf57b6ec93 257 SUPERFAMILY SSF53335 15 189 8.67E-28 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_01705 9a22b0fd191cd21268e23ba0dbf5a384 180 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 104 161 7.4E-17 T 31-10-2018 IPR018637 Domain of unknown function DUF2059 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 Gene3D G3DSA:3.30.565.10 384 532 1.2E-29 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 SMART SM00388 315 381 3.7E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 Pfam PF00512 His Kinase A (phospho-acceptor) domain 315 379 5.6E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 Gene3D G3DSA:1.10.287.130 304 380 1.2E-15 T 31-10-2018 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 Gene3D G3DSA:3.30.450.20 189 271 6.2E-5 T 31-10-2018 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 510 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 529 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 477 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 1.1E-9 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 424 529 9.6E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 SUPERFAMILY SSF55874 373 528 2.1E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 SUPERFAMILY SSF47384 312 379 1.51E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_08225 7a0e91f68aa2a59cb3eea2c761376422 537 SMART SM00387 423 532 1.6E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_21840 a67de9ba9b090bff4960e0380901b1ac 250 Gene3D G3DSA:1.10.150.240 27 109 4.2E-89 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_21840 a67de9ba9b090bff4960e0380901b1ac 250 Pfam PF13419 Haloacid dehalogenase-like hydrolase 72 193 1.1E-5 T 31-10-2018 BRM88_21840 a67de9ba9b090bff4960e0380901b1ac 250 Gene3D G3DSA:3.40.50.1000 13 216 4.2E-89 T 31-10-2018 IPR023214 HAD superfamily BRM88_21840 a67de9ba9b090bff4960e0380901b1ac 250 SUPERFAMILY SSF56784 11 230 1.84E-24 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 SUPERFAMILY SSF50156 297 406 5.06E-21 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 Gene3D G3DSA:2.40.10.120 52 308 1.8E-78 T 31-10-2018 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 355 367 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 269 286 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 171 191 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 150 162 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 211 235 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 PRINTS PR00834 HtrA/DegQ protease family signature 247 264 6.1E-50 T 31-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 SUPERFAMILY SSF50494 49 323 7.78E-64 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 SUPERFAMILY SSF50156 435 525 6.02E-7 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 Gene3D G3DSA:2.30.42.10 434 528 1.3E-9 T 31-10-2018 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 53 523 2.3E-148 T 31-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 Pfam PF13180 PDZ domain 316 406 9.9E-17 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 Pfam PF13365 Trypsin-like peptidase domain 141 276 7.4E-38 T 31-10-2018 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 Gene3D G3DSA:2.30.42.10 310 413 2.4E-25 T 31-10-2018 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 SMART SM00228 434 517 5.3 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_09655 026d1ccb970488f79fcf43956f38b144 528 SMART SM00228 315 397 7.6E-11 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_08570 6549379fb63b24efd722fc65d3c32526 175 Gene3D G3DSA:3.40.630.30 2 169 6.2E-44 T 31-10-2018 BRM88_08570 6549379fb63b24efd722fc65d3c32526 175 Pfam PF00583 Acetyltransferase (GNAT) family 41 146 1.6E-13 T 31-10-2018 IPR000182 GNAT domain BRM88_08570 6549379fb63b24efd722fc65d3c32526 175 SUPERFAMILY SSF55729 2 158 6.62E-33 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 SMART SM00493 78 163 7.1E-10 T 31-10-2018 IPR006171 TOPRIM domain BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 SUPERFAMILY SSF111304 3 195 3.4E-70 T 31-10-2018 IPR023627 Recombination protein RecR BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 Hamap MF_00017 Recombination protein RecR [recR]. 1 196 95.517 T 31-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 Gene3D G3DSA:3.40.1360.10 75 196 2.8E-40 T 31-10-2018 BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 TIGRFAM TIGR00615 recR: recombination protein RecR 3 193 4.1E-72 T 31-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 Pfam PF13662 Toprim domain 79 169 2.9E-22 T 31-10-2018 IPR006171 TOPRIM domain BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 ProSitePatterns PS01300 RecR protein signature. 55 76 - T 31-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 Pfam PF02132 RecR protein 38 76 1.9E-13 T 31-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger BRM88_05405 aaaae138433a07e266ec5bb8982ee9bf 197 Gene3D G3DSA:1.10.8.420 1 50 1.0E-16 T 31-10-2018 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Pfam PF17203 Single cache domain 3 54 172 6.8E-10 T 31-10-2018 IPR033463 Single cache domain 3 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Gene3D G3DSA:3.20.20.450 456 705 5.4E-96 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SUPERFAMILY SSF141868 457 702 2.09E-87 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SUPERFAMILY SSF55073 282 443 2.35E-44 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Gene3D G3DSA:1.20.1480.50 187 273 8.4E-12 T 31-10-2018 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SUPERFAMILY SSF158472 218 267 2.48E-9 T 31-10-2018 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SUPERFAMILY SSF103190 79 173 2.0E-5 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 274 438 7.7E-36 T 31-10-2018 IPR000160 GGDEF domain BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Pfam PF00990 Diguanylate cyclase, GGDEF domain 277 437 2.0E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Pfam PF00563 EAL domain 459 692 1.7E-71 T 31-10-2018 IPR001633 EAL domain BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SMART SM00267 266 442 2.6E-53 T 31-10-2018 IPR000160 GGDEF domain BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SMART SM00304 218 271 1.4E-12 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Gene3D G3DSA:3.30.70.270 274 455 2.3E-54 T 31-10-2018 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 Pfam PF00672 HAMP domain 218 267 5.3E-11 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_14255 2afa9fcbe5b4fc3f906c15cd774a3a09 705 SMART SM00052 452 697 2.6E-112 T 31-10-2018 IPR001633 EAL domain BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 307 319 3.9E-22 T 31-10-2018 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 3.9E-22 T 31-10-2018 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 3.9E-22 T 31-10-2018 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 3.9E-22 T 31-10-2018 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 152 173 3.9E-22 T 31-10-2018 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 Pfam PF00361 Proton-conducting membrane transporter 128 346 1.2E-39 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_11435 f384e51c3712bd167bbfdc28ff7dacf4 523 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 72 111 9.9E-7 T 31-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 Gene3D G3DSA:3.40.50.10860 17 288 9.3E-101 T 31-10-2018 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 14 130 3.3E-35 T 31-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 Hamap MF_01576 Bifunctional protein FolD [folD]. 12 294 36.897 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 SUPERFAMILY SSF51735 132 290 7.79E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 133 291 3.0E-63 T 31-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 Gene3D G3DSA:3.40.50.720 15 270 9.3E-101 T 31-10-2018 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 SUPERFAMILY SSF53223 12 131 1.44E-36 T 31-10-2018 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 119 140 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 43 65 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 267 285 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 215 244 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 84 111 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 250 266 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 164 184 2.6E-81 T 31-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_11415 6682eef3822d8ee9706f668d5fabf821 303 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 271 279 - T 31-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 Gene3D G3DSA:3.50.50.60 15 303 4.4E-45 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 SUPERFAMILY SSF51905 9 321 1.94E-36 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 7.7E-23 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 278 300 7.7E-23 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 7.7E-23 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 7.7E-23 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 248 264 7.7E-23 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PIRSF PIRSF037495 8 443 2.1E-109 T 31-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 148 172 1.9E-14 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 109 117 1.9E-14 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 288 306 1.9E-14 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 16 38 1.9E-14 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 Gene3D G3DSA:3.50.50.60 120 256 4.4E-45 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 Gene3D G3DSA:1.10.10.1100 351 409 9.9E-10 T 31-10-2018 BRM88_16775 1b4d7c93be6d3200a585cca9cb846662 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 302 2.3E-30 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 Pfam PF00248 Aldo/keto reductase family 8 250 7.4E-46 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 9.7E-45 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 9.7E-45 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 9.7E-45 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 9.7E-45 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 9.7E-45 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 PIRSF PIRSF000097 1 266 1.6E-64 T 31-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 31-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 SUPERFAMILY SSF51430 2 259 7.99E-80 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 Gene3D G3DSA:3.20.20.100 1 267 2.6E-88 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_24030 35b559ad7cd2f820b5c507be669d12ad 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 31-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BRM88_22215 1d13b19136eb01b62fbf1716366a3b57 209 SMART SM00903 28 179 5.1E-11 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BRM88_22215 1d13b19136eb01b62fbf1716366a3b57 209 Gene3D G3DSA:2.30.110.10 18 209 2.1E-56 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BRM88_22215 1d13b19136eb01b62fbf1716366a3b57 209 SUPERFAMILY SSF50475 8 194 1.42E-47 T 31-10-2018 BRM88_22215 1d13b19136eb01b62fbf1716366a3b57 209 Pfam PF01613 Flavin reductase like domain 30 174 2.5E-15 T 31-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 26 1.5E-6 T 31-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 SUPERFAMILY SSF52540 12 202 1.24E-64 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 32 202 1.3E-62 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 PIRSF PIRSF015617 6 203 8.9E-64 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 33 202 2.9E-53 T 31-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BRM88_06910 5b8e70a0a715ef32d41cf52d12a759ea 203 Gene3D G3DSA:3.40.50.300 11 203 1.3E-58 T 31-10-2018 BRM88_14310 884f3ce23611f77691f332241d50d1c1 186 Gene3D G3DSA:3.40.50.2020 5 186 9.7E-55 T 31-10-2018 BRM88_14310 884f3ce23611f77691f332241d50d1c1 186 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 18 186 32.764 T 31-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BRM88_14310 884f3ce23611f77691f332241d50d1c1 186 Pfam PF00156 Phosphoribosyl transferase domain 65 164 1.3E-16 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BRM88_14310 884f3ce23611f77691f332241d50d1c1 186 SUPERFAMILY SSF53271 20 178 2.49E-44 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_14310 884f3ce23611f77691f332241d50d1c1 186 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 20 182 1.0E-57 T 31-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BRM88_06510 0d6916a9562c9752c04d57f3300bfa3a 411 Pfam PF01610 Transposase 155 389 2.5E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_06510 0d6916a9562c9752c04d57f3300bfa3a 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 SMART SM01103 5 88 1.5E-38 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 Gene3D G3DSA:3.30.110.60 3 100 4.2E-32 T 31-10-2018 IPR035920 YhbY-like superfamily BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 88 9.0E-21 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 SUPERFAMILY SSF75471 4 98 3.01E-28 T 31-10-2018 IPR035920 YhbY-like superfamily BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 5 100 2.5E-26 T 31-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 BRM88_15735 44160658bf1821f0ee24705de4ccf2fb 101 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 11 100 2.0E-45 T 31-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 10 258 1.9E-103 T 31-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 Gene3D G3DSA:3.40.50.1820 2 258 2.4E-62 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 1.4E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 1.4E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 1.4E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 1.4E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 Pfam PF00561 alpha/beta hydrolase fold 22 132 9.1E-12 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02435 8e3487edd2b1dfa6c9680dd998779c66 260 SUPERFAMILY SSF53474 2 258 1.91E-59 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 29 42 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 177 194 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 128 144 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 66 85 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 147 165 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 228 242 1.3E-49 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 Gene3D G3DSA:1.10.8.540 451 539 2.9E-28 T 31-10-2018 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 Gene3D G3DSA:3.40.30.60 356 431 3.8E-10 T 31-10-2018 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 133 156 - T 31-10-2018 IPR025505 FHIPEP conserved site BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 Gene3D G3DSA:1.10.490.80 542 638 9.7E-27 T 31-10-2018 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 Pfam PF00771 FHIPEP family 22 428 1.5E-154 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 Pfam PF00771 FHIPEP family 434 630 6.5E-46 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PIRSF PIRSF005419 2 440 8.0E-160 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_00495 c4ef36f62b36a3b8842623eec008a35f 640 PIRSF PIRSF005419 428 640 2.9E-50 T 31-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 3.0E-187 T 31-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 Gene3D G3DSA:3.90.1150.10 9 419 1.9E-174 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 Pfam PF00202 Aminotransferase class-III 35 397 2.0E-77 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 SUPERFAMILY SSF53383 1 426 1.05E-127 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 427 102.389 T 31-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 272 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06250 97954c0d2bcd2ff8e9a9d2842fa411c8 429 Gene3D G3DSA:3.40.640.10 71 319 1.9E-174 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_22500 ca24e6cd839b59e2250c8c2d9a397df1 52 Pfam PF07043 Protein of unknown function (DUF1328) 7 44 1.1E-15 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_22500 ca24e6cd839b59e2250c8c2d9a397df1 52 PIRSF PIRSF036466 1 52 5.7E-22 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_22500 ca24e6cd839b59e2250c8c2d9a397df1 52 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 19.917 T 31-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 SMART SM00382 348 526 1.5E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 SMART SM00382 31 236 3.9E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 Pfam PF00005 ABC transporter 23 191 1.4E-28 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 Gene3D G3DSA:3.40.50.300 286 547 6.2E-73 T 31-10-2018 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 SUPERFAMILY SSF52540 9 237 1.29E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 SUPERFAMILY SSF52540 303 522 4.18E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 Gene3D G3DSA:3.40.50.300 2 285 5.1E-80 T 31-10-2018 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 552 4.3E-286 T 31-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 Pfam PF12848 ABC transporter 230 306 1.9E-11 T 31-10-2018 IPR032781 ABC-transporter extension domain BRM88_20605 c5e32b8eb21a8ea0c6a6a80d877aa544 553 Pfam PF00005 ABC transporter 340 473 2.2E-23 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 SUPERFAMILY SSF56059 140 357 4.42E-60 T 31-10-2018 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Gene3D G3DSA:3.30.470.20 129 351 3.0E-85 T 31-10-2018 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Pfam PF07478 D-ala D-ala ligase C-terminus 148 348 9.4E-74 T 31-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Gene3D G3DSA:3.30.1490.20 155 224 3.0E-85 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Pfam PF01820 D-ala D-ala ligase N-terminus 5 130 9.6E-30 T 31-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 SUPERFAMILY SSF52440 3 139 3.93E-37 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Gene3D G3DSA:3.40.50.20 2 128 6.1E-49 T 31-10-2018 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 41.176 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 PIRSF PIRSF039102 1 359 3.4E-127 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 1.5E-110 T 31-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_01735 a85ff621d3560037e926154b415d62aa 367 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 31-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_18670 95d1c675bca832559badecfb5a477938 720 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 21 233 5.8E-13 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_18670 95d1c675bca832559badecfb5a477938 720 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 247 362 1.7E-16 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 130 224 8.6E-26 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Gene3D G3DSA:1.20.140.10 242 392 8.3E-56 T 31-10-2018 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 SUPERFAMILY SSF47203 234 388 5.32E-60 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 PIRSF PIRSF016578 8 202 2.9E-10 T 31-10-2018 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 PIRSF PIRSF016578 218 392 3.7E-15 T 31-10-2018 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Gene3D G3DSA:2.40.110.10 130 241 6.6E-44 T 31-10-2018 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Gene3D G3DSA:1.10.540.10 2 127 2.6E-35 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 SUPERFAMILY SSF56645 12 249 3.93E-80 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 125 1.5E-29 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 386 2.6E-49 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_09615 12c0c193074102b924dc5d6f7a839548 393 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 132 144 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_08285 a1437bdb564e9dbb6365a3df37057ca0 592 Gene3D G3DSA:1.50.10.10 218 590 4.5E-78 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_08285 a1437bdb564e9dbb6365a3df37057ca0 592 Pfam PF00723 Glycosyl hydrolases family 15 220 522 5.3E-22 T 31-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 BRM88_08285 a1437bdb564e9dbb6365a3df37057ca0 592 SUPERFAMILY SSF48208 204 588 2.72E-88 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 SUPERFAMILY SSF46785 4 115 1.84E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.2E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 Pfam PF03466 LysR substrate binding domain 93 294 2.2E-41 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 7.2E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 Gene3D G3DSA:3.40.190.290 95 298 4.7E-46 T 31-10-2018 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 SUPERFAMILY SSF53850 95 297 4.62E-41 T 31-10-2018 BRM88_05655 e5cf374230d0cc007cb9ac2ba3a761f8 300 Gene3D G3DSA:1.10.10.10 5 94 1.5E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Pfam PF04679 ATP dependent DNA ligase C terminal region 429 518 3.0E-7 T 31-10-2018 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Pfam PF04675 DNA ligase N terminus 3 166 4.2E-20 T 31-10-2018 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Gene3D G3DSA:3.30.470.30 207 408 1.1E-46 T 31-10-2018 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 SUPERFAMILY SSF50249 413 532 5.48E-25 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Gene3D G3DSA:1.10.3260.10 1 202 1.6E-5 T 31-10-2018 IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily GO:0003677|GO:0003910|GO:0006281|GO:0006310 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 SUPERFAMILY SSF56091 206 408 1.58E-53 T 31-10-2018 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 532 3.4E-184 T 31-10-2018 IPR026333 ATP-dependent DNA ligase, PP_1105 family BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Gene3D G3DSA:2.40.50.140 412 534 2.7E-26 T 31-10-2018 BRM88_09770 dc203f508cdea035bfdfb1bb144952ae 534 Pfam PF01068 ATP dependent DNA ligase domain 212 408 3.5E-33 T 31-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 BRM88_08045 b750e86179b7c44b36810a8ffbc49e00 558 Gene3D G3DSA:2.40.128.600 437 530 3.7E-11 T 31-10-2018 BRM88_08045 b750e86179b7c44b36810a8ffbc49e00 558 Pfam PF11954 Domain of unknown function (DUF3471) 443 548 3.3E-31 T 31-10-2018 IPR021860 Peptidase S12, Pab87-related, C-terminal BRM88_08045 b750e86179b7c44b36810a8ffbc49e00 558 Gene3D G3DSA:3.40.710.10 59 409 1.6E-94 T 31-10-2018 BRM88_08045 b750e86179b7c44b36810a8ffbc49e00 558 Pfam PF00144 Beta-lactamase 68 398 9.5E-70 T 31-10-2018 IPR001466 Beta-lactamase-related BRM88_08045 b750e86179b7c44b36810a8ffbc49e00 558 SUPERFAMILY SSF56601 60 392 3.86E-85 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 SMART SM00865 209 327 2.9E-57 T 31-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 SUPERFAMILY SSF55307 206 321 8.01E-43 T 31-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 328 2.3E-130 T 31-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 11 349 37.672 T 31-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 PRINTS PR00423 Cell division protein FtsZ signature 128 149 3.9E-52 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 PRINTS PR00423 Cell division protein FtsZ signature 191 213 3.9E-52 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 PRINTS PR00423 Cell division protein FtsZ signature 214 235 3.9E-52 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 PRINTS PR00423 Cell division protein FtsZ signature 100 120 3.9E-52 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 Gene3D G3DSA:3.40.50.1440 12 319 2.0E-118 T 31-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 Pfam PF12327 FtsZ family, C-terminal domain 224 318 2.9E-38 T 31-10-2018 IPR024757 Cell division protein FtsZ, C-terminal BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 SMART SM00864 15 207 5.5E-112 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 SUPERFAMILY SSF52490 15 210 1.57E-69 T 31-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 174 7.5E-40 T 31-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BRM88_20380 053473ca2d7b6a823c8b02d835efcd63 414 ProSitePatterns PS01135 FtsZ protein signature 2. 99 120 - T 31-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 SUPERFAMILY SSF53955 90 239 3.34E-32 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 Gene3D G3DSA:3.10.350.10 343 388 2.1E-13 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 SMART SM00257 345 389 1.4E-8 T 31-10-2018 IPR018392 LysM domain BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 Gene3D G3DSA:1.10.530.10 92 245 1.2E-24 T 31-10-2018 BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 Pfam PF01464 Transglycosylase SLT domain 100 204 1.6E-22 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 Pfam PF01476 LysM domain 346 387 2.1E-10 T 31-10-2018 IPR018392 LysM domain BRM88_05220 2c72aade25c4b9d6e9f417579180fed5 392 SUPERFAMILY SSF54106 344 387 5.62E-9 T 31-10-2018 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 Gene3D G3DSA:1.10.1060.10 129 260 1.0E-58 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 31 252 3.9E-84 T 31-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 171 182 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 Gene3D G3DSA:3.10.20.30 18 128 1.9E-44 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 28 133 2.5E-33 T 31-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 Pfam PF13534 4Fe-4S dicluster domain 170 243 7.0E-10 T 31-10-2018 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 SUPERFAMILY SSF46548 130 257 1.1E-39 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 SUPERFAMILY SSF54292 27 128 7.48E-31 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BRM88_12190 dadf9cdd70b72b279f4861af3bcf1ff1 260 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 79 87 - T 31-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BRM88_19345 1396213bc81f971dde226503a36ca976 361 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 47 360 4.1E-142 T 31-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 BRM88_19345 1396213bc81f971dde226503a36ca976 361 PIRSF PIRSF006468 4 361 1.3E-134 T 31-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 BRM88_19345 1396213bc81f971dde226503a36ca976 361 Gene3D G3DSA:3.20.10.10 174 343 4.0E-134 T 31-10-2018 BRM88_19345 1396213bc81f971dde226503a36ca976 361 ProSitePatterns PS00770 Aminotransferases class-IV signature. 236 266 - T 31-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BRM88_19345 1396213bc81f971dde226503a36ca976 361 Gene3D G3DSA:3.30.470.10 28 356 4.0E-134 T 31-10-2018 BRM88_19345 1396213bc81f971dde226503a36ca976 361 Pfam PF01063 Amino-transferase class IV 73 316 3.9E-35 T 31-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BRM88_19345 1396213bc81f971dde226503a36ca976 361 SUPERFAMILY SSF56752 12 357 9.16E-114 T 31-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 SUPERFAMILY SSF50129 1 187 4.26E-72 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 Gene3D G3DSA:3.90.180.10 6 364 1.8E-151 T 31-10-2018 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 SMART SM00829 10 367 0.004 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 Gene3D G3DSA:3.40.50.720 174 312 1.8E-151 T 31-10-2018 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 SUPERFAMILY SSF50129 318 369 2.82E-12 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 Pfam PF00107 Zinc-binding dehydrogenase 197 329 1.2E-23 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 SUPERFAMILY SSF51735 160 333 2.82E-47 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 1.0E-224 T 31-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 BRM88_20635 1d7df43183fc7958cdef95e40a2b5a85 369 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 151 7.8E-26 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_09145 934a16009279a733aa489fe393b35ae9 158 Gene3D G3DSA:2.30.30.40 14 28 1.5E-7 T 31-10-2018 BRM88_09145 934a16009279a733aa489fe393b35ae9 158 Pfam PF01584 CheW-like domain 11 145 1.3E-14 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_09145 934a16009279a733aa489fe393b35ae9 158 SUPERFAMILY SSF50341 5 87 6.54E-13 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_09145 934a16009279a733aa489fe393b35ae9 158 SMART SM00260 6 146 0.01 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_09145 934a16009279a733aa489fe393b35ae9 158 Gene3D G3DSA:2.40.50.180 29 89 1.5E-7 T 31-10-2018 BRM88_11850 cee6e764a3aed990b1c975279054f2b2 106 Pfam PF10734 Protein of unknown function (DUF2523) 20 90 5.0E-11 T 31-10-2018 IPR019670 Protein of unkown function DUF2523 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 Gene3D G3DSA:1.20.5.710 2 52 1.3E-22 T 31-10-2018 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 22.914 T 31-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 122 7.0E-28 T 31-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 SUPERFAMILY SSF48300 4 59 7.59E-18 T 31-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 49 1.9E-18 T 31-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 SUPERFAMILY SSF54736 52 122 7.67E-22 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.8E-42 T 31-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 Gene3D G3DSA:3.30.1390.10 53 122 2.9E-25 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BRM88_19165 24dd9cf93286f5f0c54d48a5d99301c5 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 122 5.4E-24 T 31-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_09055 b575ddefb36ffb0e44ca02af5976f648 299 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 299 5.8E-135 T 31-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B BRM88_09055 b575ddefb36ffb0e44ca02af5976f648 299 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 299 144.82 T 31-10-2018 IPR011842 Coenzyme PQQ biosynthesis protein B BRM88_09055 b575ddefb36ffb0e44ca02af5976f648 299 SUPERFAMILY SSF56281 1 299 1.96E-54 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_09055 b575ddefb36ffb0e44ca02af5976f648 299 Pfam PF12706 Beta-lactamase superfamily domain 50 265 3.9E-53 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_09055 b575ddefb36ffb0e44ca02af5976f648 299 Gene3D G3DSA:3.60.15.10 1 299 2.8E-84 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_04175 dd34e7ceac0bd553769e08370118a1dd 141 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 137 4.0E-33 T 31-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 BRM88_04175 dd34e7ceac0bd553769e08370118a1dd 141 SUPERFAMILY SSF102400 1 140 4.97E-36 T 31-10-2018 IPR036768 DNA polymerase III subunit chi superfamily BRM88_04175 dd34e7ceac0bd553769e08370118a1dd 141 Gene3D G3DSA:3.40.50.10110 1 140 4.4E-35 T 31-10-2018 IPR036768 DNA polymerase III subunit chi superfamily BRM88_00770 3e69645479c3a4a177dd34061b35cb24 133 Gene3D G3DSA:3.30.2310.20 1 92 9.3E-13 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_00770 3e69645479c3a4a177dd34061b35cb24 133 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 1 88 1.4E-14 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 6 211 2.3E-62 T 31-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 Gene3D G3DSA:3.40.50.20 1 93 1.8E-7 T 31-10-2018 BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 31-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 163 197 4.2E-6 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 143 8.4E-7 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 SUPERFAMILY SSF51161 4 218 2.36E-37 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_15990 3660ce3fd401b3b694503219781a04b4 223 Gene3D G3DSA:2.160.10.10 94 220 3.9E-27 T 31-10-2018 BRM88_13655 62f4f2ac56f12fd120f6396b510a65b6 216 Gene3D G3DSA:2.160.10.10 89 208 2.6E-32 T 31-10-2018 BRM88_13655 62f4f2ac56f12fd120f6396b510a65b6 216 SUPERFAMILY SSF51161 4 208 1.37E-37 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_13655 62f4f2ac56f12fd120f6396b510a65b6 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 158 191 3.3E-9 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_13655 62f4f2ac56f12fd120f6396b510a65b6 216 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 155 6.4E-8 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_13655 62f4f2ac56f12fd120f6396b510a65b6 216 Gene3D G3DSA:3.40.50.20 1 88 6.0E-8 T 31-10-2018 BRM88_20560 bc10f9efa12cafef3a9a776e7c1cd62f 207 SUPERFAMILY SSF56935 22 207 2.11E-5 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 65 725 3.8E-163 T 31-10-2018 IPR004811 RelA/SpoT family GO:0015969 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Gene3D G3DSA:3.30.460.10 207 339 6.7E-49 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Pfam PF04607 Region found in RelA / SpoT proteins 249 359 1.5E-37 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 SMART SM00954 249 359 1.4E-67 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Gene3D G3DSA:3.10.20.30 394 469 1.4E-30 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Pfam PF13291 ACT domain 649 726 1.3E-18 T 31-10-2018 IPR002912 ACT domain BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Gene3D G3DSA:3.30.70.260 649 728 8.4E-15 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 SUPERFAMILY SSF81301 206 378 2.45E-63 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 SUPERFAMILY SSF109604 58 204 6.28E-23 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 SUPERFAMILY SSF55021 651 726 2.44E-8 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Pfam PF13328 HD domain 64 190 1.9E-18 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Gene3D G3DSA:1.10.3210.10 59 205 1.1E-24 T 31-10-2018 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 Pfam PF02824 TGS domain 402 460 2.9E-20 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BRM88_09065 259bd2e96df3c53808487962f7c3e968 728 SUPERFAMILY SSF81271 396 460 1.24E-19 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 SMART SM00862 146 220 4.7E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 SUPERFAMILY SSF52172 2 174 1.38E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 220 2.6E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 Gene3D G3DSA:1.10.10.10 120 223 1.6E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 SMART SM00448 1 113 2.9E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 Pfam PF00072 Response regulator receiver domain 3 112 1.9E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_06150 8381b5f0a941a722e1d458c12633a2b8 225 Gene3D G3DSA:3.40.50.2300 1 119 1.1E-36 T 31-10-2018 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Gene3D G3DSA:1.10.720.10 212 258 2.8E-14 T 31-10-2018 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 371 574 6.4E-22 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SMART SM00959 215 258 1.2E-11 T 31-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SMART SM00382 381 561 9.2E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SUPERFAMILY SSF50249 261 334 3.31E-25 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Pfam PF07497 Rho termination factor, RNA-binding domain 263 335 1.2E-27 T 31-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 TIGRFAM TIGR00767 rho: transcription termination factor Rho 212 628 2.1E-205 T 31-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SUPERFAMILY SSF52540 301 582 2.09E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SUPERFAMILY SSF68912 212 257 8.24E-7 T 31-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Gene3D G3DSA:2.40.50.140 259 334 4.5E-30 T 31-10-2018 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Gene3D G3DSA:3.40.50.300 341 628 1.1E-128 T 31-10-2018 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 SMART SM00357 263 329 6.8E-15 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Hamap MF_01884 Transcription termination factor Rho [rho]. 211 629 227.992 T 31-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BRM88_22875 7bf46f98720cd89c032b588ddf6585e6 629 Pfam PF07498 Rho termination factor, N-terminal domain 215 258 8.3E-13 T 31-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 Gene3D G3DSA:3.30.2350.10 91 322 1.2E-72 T 31-10-2018 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 Pfam PF00849 RNA pseudouridylate synthase 99 248 1.8E-33 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 Gene3D G3DSA:3.10.290.10 14 81 7.5E-16 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 22 319 2.6E-93 T 31-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08260 51c034fdf965355d4ae5cc56b3d743c3 331 SUPERFAMILY SSF55120 84 321 3.7E-76 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_19305 5f642a71ce4b8b3ce0c4338e39546806 425 Pfam PF03631 Virulence factor BrkB 33 279 3.6E-56 T 31-10-2018 IPR017039 Virulence factor BrkB BRM88_19305 5f642a71ce4b8b3ce0c4338e39546806 425 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 14 309 21.284 T 31-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial BRM88_19305 5f642a71ce4b8b3ce0c4338e39546806 425 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 22 280 1.0E-71 T 31-10-2018 IPR017039 Virulence factor BrkB BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 303 1.1E-124 T 31-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 SUPERFAMILY SSF53686 2 305 1.96E-92 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 Gene3D G3DSA:3.40.50.1100 37 155 2.0E-114 T 31-10-2018 BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 303 2.6E-131 T 31-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 Gene3D G3DSA:3.40.50.1100 7 300 2.0E-114 T 31-10-2018 BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 31-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BRM88_18130 ef0257140ff4fe0ae3b0504f0a1981af 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 291 7.7E-63 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 Gene3D G3DSA:3.40.190.10 170 270 2.1E-59 T 31-10-2018 BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 SUPERFAMILY SSF46785 8 92 1.42E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 Pfam PF03466 LysR substrate binding domain 93 299 1.4E-41 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 SUPERFAMILY SSF53850 94 302 8.69E-42 T 31-10-2018 BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 Gene3D G3DSA:3.40.190.10 97 297 2.1E-59 T 31-10-2018 BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 7.3E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11045 4aac5a1202c5cf04dd3fab3736ee80d6 337 Gene3D G3DSA:1.10.10.10 7 96 2.0E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 Gene3D G3DSA:3.40.50.720 4 255 2.9E-75 T 31-10-2018 BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 199 0.0018 T 31-10-2018 BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 9.6E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 9.6E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 9.6E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 1.4E-31 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 SUPERFAMILY SSF51735 7 252 8.23E-65 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_15460 cced7cc3514e22f5426bb16cc7f836e5 256 Pfam PF00106 short chain dehydrogenase 8 202 2.6E-47 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_03465 142cd1922be6a7b8ed7bbbe1fc975df0 193 Pfam PF11454 Protein of unknown function (DUF3016) 45 182 5.3E-52 T 31-10-2018 IPR021557 Protein of unknown function DUF3016 BRM88_19505 898a599b0c5388e3380467f72e0e6945 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_19505 898a599b0c5388e3380467f72e0e6945 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_19505 898a599b0c5388e3380467f72e0e6945 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Gene3D G3DSA:2.40.50.100 132 209 2.2E-20 T 31-10-2018 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 SUPERFAMILY SSF51230 3 97 6.67E-23 T 31-10-2018 IPR011053 Single hybrid motif BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Gene3D G3DSA:4.10.320.10 293 335 1.0E-16 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 SUPERFAMILY SSF51230 133 222 5.5E-22 T 31-10-2018 IPR011053 Single hybrid motif BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 SUPERFAMILY SSF52777 357 597 4.89E-84 T 31-10-2018 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 368 596 1.6E-80 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Gene3D G3DSA:2.40.50.100 7 82 4.5E-20 T 31-10-2018 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Gene3D G3DSA:3.30.559.10 353 597 9.4E-96 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Pfam PF02817 e3 binding domain 293 327 1.2E-13 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 156 185 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 SUPERFAMILY SSF47005 289 331 8.5E-11 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Pfam PF00364 Biotin-requiring enzyme 135 205 1.8E-20 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_03600 3a495e39f9f7329a1aa95a6ee2448c8b 597 Pfam PF00364 Biotin-requiring enzyme 9 77 1.8E-20 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 Pfam PF00221 Aromatic amino acid lyase 13 470 2.7E-181 T 31-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 Gene3D G3DSA:1.10.275.10 3 197 2.7E-63 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 SUPERFAMILY SSF48557 5 502 4.71E-186 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 31-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 Gene3D G3DSA:1.20.200.10 198 507 6.1E-116 T 31-10-2018 BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 503 1.2E-203 T 31-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_12715 92db5d9076dd09eede62aa055df7e857 513 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 4 504 44.855 T 31-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 131 147 - T 31-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 7 315 8.9E-100 T 31-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 SUPERFAMILY SSF51735 6 152 6.61E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 6 316 32.989 T 31-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 122 4.5E-28 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 SMART SM00859 7 128 3.5E-32 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 Gene3D G3DSA:3.40.50.720 8 308 3.7E-91 T 31-10-2018 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 SUPERFAMILY SSF55347 136 290 2.45E-35 T 31-10-2018 BRM88_14065 9f12b9c1990fd69fcf3e53a32ee420e7 316 Gene3D G3DSA:3.30.360.10 134 290 3.7E-91 T 31-10-2018 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 627 644 - T 31-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 335 1.1E-73 T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Pfam PF02785 Biotin carboxylase C-terminal domain 349 457 4.8E-36 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 SUPERFAMILY SSF52440 12 126 3.96E-50 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Pfam PF00364 Biotin-requiring enzyme 605 669 7.4E-14 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Gene3D G3DSA:3.30.470.130 5 463 1.1E-200 T 31-10-2018 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Gene3D G3DSA:3.30.700.40 465 595 6.3E-6 T 31-10-2018 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 SUPERFAMILY SSF51246 344 461 1.36E-36 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 299 306 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Gene3D G3DSA:2.40.50.100 596 672 3.9E-22 T 31-10-2018 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 SUPERFAMILY SSF56059 96 356 1.7E-68 T 31-10-2018 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 SMART SM00878 349 456 8.2E-54 T 31-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 Pfam PF00289 Biotin carboxylase, N-terminal domain 15 123 8.6E-46 T 31-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 SUPERFAMILY SSF51230 596 669 1.44E-19 T 31-10-2018 IPR011053 Single hybrid motif BRM88_23260 c98fecadca6d35c0c3e5bfbd2f642230 675 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 166 180 - T 31-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 Pfam PF00593 TonB dependent receptor 463 954 2.1E-33 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 33 957 3.9E-239 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 162 1.4E-13 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 SUPERFAMILY SSF56935 29 957 3.66E-74 T 31-10-2018 BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 Gene3D G3DSA:2.170.130.10 25 168 2.1E-17 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 940 957 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site BRM88_23560 80d04ca748dd9eb6cc6120108ff46d7e 957 Gene3D G3DSA:2.40.170.20 312 957 4.7E-40 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 Gene3D G3DSA:1.10.357.10 10 205 4.5E-40 T 31-10-2018 BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 1.3E-16 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 SUPERFAMILY SSF46689 10 90 1.56E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 SUPERFAMILY SSF48498 87 200 1.59E-10 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 2.1E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_23275 563e91b3024f05abe38a0a4da890a852 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 2.1E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 SUPERFAMILY SSF51569 6 293 2.41E-83 T 31-10-2018 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 SMART SM01130 6 295 3.0E-93 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 40 61 3.2E-12 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 76 94 3.2E-12 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 108 124 3.2E-12 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 3.2E-12 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 Gene3D G3DSA:3.20.20.70 4 297 4.2E-82 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 PIRSF PIRSF001365 4 301 3.6E-75 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_16770 5fa6889e3260ad491c9afe08f33379d3 302 Pfam PF00701 Dihydrodipicolinate synthetase family 8 292 4.0E-59 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 Pfam PF02599 Global regulator protein family 1 52 4.7E-27 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 55 1.4E-27 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 SUPERFAMILY SSF117130 1 53 8.89E-21 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 Gene3D G3DSA:3.30.70.1680 1 58 4.8E-29 T 31-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 61 17.28 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BRM88_15665 5a422c16e52a97546d2c857594b5702a 70 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 31-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BRM88_12175 e49b1338feb7738a23766065f63f49ca 413 Pfam PF02687 FtsX-like permease family 300 406 1.7E-11 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BRM88_12175 e49b1338feb7738a23766065f63f49ca 413 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 413 3.8E-140 T 31-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 BRM88_12175 e49b1338feb7738a23766065f63f49ca 413 Pfam PF12704 MacB-like periplasmic core domain 28 232 1.2E-17 T 31-10-2018 IPR025857 MacB-like periplasmic core domain BRM88_15975 362d97a7d9c54d75108434b052bad0f1 370 Gene3D G3DSA:3.90.1150.10 250 367 3.3E-33 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_15975 362d97a7d9c54d75108434b052bad0f1 370 Gene3D G3DSA:3.40.640.10 1 248 5.4E-84 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_15975 362d97a7d9c54d75108434b052bad0f1 370 PIRSF PIRSF000390 5 368 3.0E-97 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BRM88_15975 362d97a7d9c54d75108434b052bad0f1 370 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 362 3.1E-116 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BRM88_15975 362d97a7d9c54d75108434b052bad0f1 370 SUPERFAMILY SSF53383 15 366 5.09E-100 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 Pfam PF01568 Molydopterin dinucleotide binding domain 650 757 6.8E-11 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 Gene3D G3DSA:3.40.50.740 121 596 1.2E-66 T 31-10-2018 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 SUPERFAMILY SSF50692 645 765 1.6E-17 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 PIRSF PIRSF000144 1 768 0.0 T 31-10-2018 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 Gene3D G3DSA:3.40.228.10 185 412 1.2E-66 T 31-10-2018 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 SUPERFAMILY SSF53706 48 632 1.44E-142 T 31-10-2018 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 Pfam PF00384 Molybdopterin oxidoreductase 109 494 3.7E-25 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_14735 212ca8f07ac7d37dee4ab5999111412e 782 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 13 762 7.9E-284 T 31-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 BRM88_22735 d765caab74766f7d34e9c52f57cd72ba 172 Gene3D G3DSA:2.60.120.10 48 158 2.5E-5 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_22735 d765caab74766f7d34e9c52f57cd72ba 172 SUPERFAMILY SSF51182 66 159 3.2E-8 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 SMART SM00422 5 73 5.7E-22 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 Pfam PF00376 MerR family regulatory protein 6 42 5.7E-12 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 2.3E-11 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 2.3E-11 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 2.3E-11 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 5 142 4.3E-64 T 31-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 Gene3D G3DSA:1.10.1660.10 1 128 2.2E-30 T 31-10-2018 BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 Pfam PF09278 MerR, DNA binding 47 112 1.3E-15 T 31-10-2018 IPR015358 Transcription regulator MerR, DNA binding BRM88_06425 8fcd39ea93475a88f591f6f69dec9637 148 SUPERFAMILY SSF46955 5 125 9.16E-27 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 438 457 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 261 287 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 329 341 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 239 260 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 5.0E-65 T 31-10-2018 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 Pfam PF00361 Proton-conducting membrane transporter 139 421 1.4E-86 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 9 714 1.3E-234 T 31-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 70 127 1.0E-24 T 31-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 90 110 1.4E-15 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 437 459 1.4E-15 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 517 538 1.4E-15 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 279 301 1.4E-15 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BRM88_17230 5c0cc4278fd5df6ed24c6b6dfb2ce51e 719 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 64 88 1.4E-15 T 31-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BRM88_18075 cd646b795591745956632414d8d4437d 241 PIRSF PIRSF000857 3 241 7.7E-61 T 31-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BRM88_18075 cd646b795591745956632414d8d4437d 241 Gene3D G3DSA:3.40.50.620 7 241 2.2E-68 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_18075 cd646b795591745956632414d8d4437d 241 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 8 239 41.125 T 31-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BRM88_18075 cd646b795591745956632414d8d4437d 241 SUPERFAMILY SSF52402 16 204 5.8E-58 T 31-10-2018 BRM88_18075 cd646b795591745956632414d8d4437d 241 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 45 215 9.5E-54 T 31-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BRM88_18075 cd646b795591745956632414d8d4437d 241 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 17 238 3.9E-89 T 31-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 BRM88_18075 cd646b795591745956632414d8d4437d 241 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 29 239 4.9E-83 T 31-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BRM88_14690 3b9f00865abdc4571fcaebcebf8e7ae9 483 SUPERFAMILY SSF53098 39 463 6.22E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14690 3b9f00865abdc4571fcaebcebf8e7ae9 483 Pfam PF13546 DDE superfamily endonuclease 39 312 3.7E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_09285 58934d4dfd43cd42f02569c98e031e4a 372 Gene3D G3DSA:3.30.470.20 209 319 5.3E-9 T 31-10-2018 BRM88_09285 58934d4dfd43cd42f02569c98e031e4a 372 SUPERFAMILY SSF56059 131 305 5.39E-8 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 SMART SM00283 404 651 9.1E-95 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 464 618 4.8E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 SUPERFAMILY SSF158472 170 220 8.37E-7 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 SMART SM00304 351 403 34.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 SMART SM00304 170 222 7.5E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Pfam PF00672 HAMP domain 170 218 2.8E-6 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Gene3D G3DSA:1.20.1440.210 5 135 8.9E-24 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Pfam PF05227 CHASE3 domain 3 136 4.6E-31 T 31-10-2018 IPR007891 CHASE3 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Gene3D G3DSA:1.10.287.950 352 653 8.6E-86 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 SUPERFAMILY SSF58104 371 652 5.1E-72 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 Gene3D G3DSA:1.20.120.1530 163 308 2.1E-36 T 31-10-2018 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 425 454 4.8E-58 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 531 560 4.8E-58 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 579 608 4.8E-58 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_15160 c622abd5b23a42dee65ff128e1495dff 703 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 502 529 4.8E-58 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_19625 2a29e8c45c92aa52228a1a94c6dcc7ef 274 PIRSF PIRSF012318 6 274 4.0E-105 T 31-10-2018 IPR011197 Uncharacterised conserved protein UCP012318 BRM88_19625 2a29e8c45c92aa52228a1a94c6dcc7ef 274 SUPERFAMILY SSF47240 66 270 1.52E-22 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_19625 2a29e8c45c92aa52228a1a94c6dcc7ef 274 Pfam PF04305 Protein of unknown function (DUF455) 21 266 1.2E-98 T 31-10-2018 IPR007402 Protein of unknown function DUF455 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.087 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 31-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 2.7E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 Pfam PF01016 Ribosomal L27 protein 2 82 8.8E-38 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 SUPERFAMILY SSF110324 2 82 8.02E-34 T 31-10-2018 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 9.0E-19 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.7E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.7E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.7E-37 T 31-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08390 9a17d0b64bd6a2dbd4ec97f83ab654f0 86 Gene3D G3DSA:2.40.50.100 21 86 9.2E-30 T 31-10-2018 BRM88_21745 fea92a60fbcc9bbcfdfef9705f71a0b0 221 SUPERFAMILY SSF52518 2 213 5.9E-59 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_21745 fea92a60fbcc9bbcfdfef9705f71a0b0 221 Gene3D G3DSA:3.40.50.970 1 218 1.7E-64 T 31-10-2018 BRM88_21745 fea92a60fbcc9bbcfdfef9705f71a0b0 221 Pfam PF00676 Dehydrogenase E1 component 2 196 1.6E-50 T 31-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BRM88_04655 2745675717413b47dd4cd89c3baa6734 260 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 197 246 1.7E-18 T 31-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BRM88_04655 2745675717413b47dd4cd89c3baa6734 260 Pfam PF12760 Transposase zinc-ribbon domain 23 69 3.5E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 ProSitePatterns PS00211 ABC transporters family signature. 609 623 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 SUPERFAMILY SSF52540 461 684 1.88E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Gene3D G3DSA:3.90.70.10 1 137 1.8E-37 T 31-10-2018 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Gene3D G3DSA:1.20.1560.10 143 453 1.8E-64 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 SMART SM00382 497 681 9.3E-20 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 SUPERFAMILY SSF90123 144 461 1.18E-58 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Pfam PF00664 ABC transporter transmembrane region 160 423 1.8E-33 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Gene3D G3DSA:3.40.50.300 454 687 1.6E-77 T 31-10-2018 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Pfam PF03412 Peptidase C39 family 2 129 3.9E-35 T 31-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BRM88_09305 d6831ae3c63868e1a671be9fdd191bcc 704 Pfam PF00005 ABC transporter 489 637 4.7E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 Gene3D G3DSA:3.40.1160.10 4 296 6.3E-95 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 SUPERFAMILY SSF53633 17 294 6.28E-53 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 Gene3D G3DSA:3.40.630.30 297 447 1.1E-54 T 31-10-2018 BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 SUPERFAMILY SSF55729 305 391 1.52E-5 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 TIGRFAM TIGR00761 argB: acetylglutamate kinase 43 262 3.9E-61 T 31-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 Pfam PF00696 Amino acid kinase family 44 256 1.7E-30 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 PIRSF PIRSF036441 22 447 3.0E-287 T 31-10-2018 IPR011242 Acetylglutamate kinase ArgB, GNAT domain-containing GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_14075 580c4d810cfa1415246763da19e1aa4d 447 Pfam PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase 276 439 1.1E-54 T 31-10-2018 IPR006855 Vertebrate-like NAGS Gcn5-related N-acetyltransferase (GNAT) domain KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|Reactome: R-HSA-70635 BRM88_03925 f9409ab3ae5046acc9b9418cf919a3b8 439 SUPERFAMILY SSF53098 18 403 1.59E-28 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_03925 f9409ab3ae5046acc9b9418cf919a3b8 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.4E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_08150 ae683303d6098392627df20a72a482d7 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.6E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_08150 ae683303d6098392627df20a72a482d7 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 Pfam PF00355 Rieske [2Fe-2S] domain 109 182 1.5E-9 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 Gene3D G3DSA:1.20.5.510 7 44 1.6E-5 T 31-10-2018 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 Gene3D G3DSA:2.102.10.10 47 198 9.4E-43 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 SUPERFAMILY SSF50022 34 199 1.25E-38 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 9 44 1.0E-14 T 31-10-2018 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 13 198 2.1E-68 T 31-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 157 169 2.6E-5 T 31-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BRM88_14580 e3cb48cff683272c51ed8bc13c3ff816 214 PRINTS PR00162 Rieske 2Fe-2S subunit signature 126 137 2.6E-5 T 31-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BRM88_13060 efd5e257fda289862453e5fceb3c5eda 353 Pfam PF01609 Transposase DDE domain 160 336 4.4E-6 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13060 efd5e257fda289862453e5fceb3c5eda 353 Pfam PF05598 Transposase domain (DUF772) 44 118 1.8E-22 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20510 10409118a6ad96649fb88c2919146c65 597 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 594 27.654 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BRM88_20510 10409118a6ad96649fb88c2919146c65 597 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 201 594 8.8E-120 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BRM88_20510 10409118a6ad96649fb88c2919146c65 597 PIRSF PIRSF001294 1 596 5.1E-231 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BRM88_20510 10409118a6ad96649fb88c2919146c65 597 Pfam PF03814 Potassium-transporting ATPase A subunit 6 592 7.8E-211 T 31-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BRM88_06435 4e8ff442a5782132bf8a0927dbdbd485 1048 SUPERFAMILY SSF56935 32 1048 1.31E-84 T 31-10-2018 BRM88_06435 4e8ff442a5782132bf8a0927dbdbd485 1048 Pfam PF00593 TonB dependent receptor 475 1046 1.2E-31 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06435 4e8ff442a5782132bf8a0927dbdbd485 1048 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 45 1048 3.4E-268 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_06435 4e8ff442a5782132bf8a0927dbdbd485 1048 Gene3D G3DSA:2.170.130.10 36 188 2.9E-15 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_06435 4e8ff442a5782132bf8a0927dbdbd485 1048 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 182 2.3E-14 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_09115 c94b3d9b848a7310b631fbebf1d3feea 133 SMART SM00448 14 127 8.4E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09115 c94b3d9b848a7310b631fbebf1d3feea 133 Gene3D G3DSA:3.40.50.12740 13 133 1.3E-38 T 31-10-2018 BRM88_09115 c94b3d9b848a7310b631fbebf1d3feea 133 SUPERFAMILY SSF52172 13 131 2.7E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_09115 c94b3d9b848a7310b631fbebf1d3feea 133 Pfam PF00072 Response regulator receiver domain 16 128 1.1E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Gene3D G3DSA:3.90.190.20 317 472 6.4E-46 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 15 473 43.135 T 31-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 SUPERFAMILY SSF53623 101 317 2.22E-69 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 SUPERFAMILY SSF53244 319 468 6.96E-44 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Pfam PF08245 Mur ligase middle domain 120 299 3.3E-27 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 410 2.5E-18 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Gene3D G3DSA:3.40.50.720 17 102 1.0E-31 T 31-10-2018 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Gene3D G3DSA:3.40.1190.10 104 316 1.9E-80 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 SUPERFAMILY SSF51984 17 102 4.58E-28 T 31-10-2018 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 Pfam PF01225 Mur ligase family, catalytic domain 18 115 1.8E-26 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BRM88_20400 87e056cd3487e864943e0d28729679c3 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 18 467 1.2E-160 T 31-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_07205 1f315021e637be886eacf41f8cb3e564 155 SUPERFAMILY SSF82199 4 148 1.57E-42 T 31-10-2018 BRM88_07205 1f315021e637be886eacf41f8cb3e564 155 SMART SM00317 3 128 3.1E-31 T 31-10-2018 IPR001214 SET domain GO:0005515 BRM88_07205 1f315021e637be886eacf41f8cb3e564 155 Pfam PF00856 SET domain 14 122 1.4E-19 T 31-10-2018 IPR001214 SET domain GO:0005515 BRM88_07205 1f315021e637be886eacf41f8cb3e564 155 Gene3D G3DSA:2.170.270.10 1 155 4.5E-44 T 31-10-2018 BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 3 301 1.5E-60 T 31-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 Gene3D G3DSA:3.40.50.720 1 181 1.6E-52 T 31-10-2018 BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 SUPERFAMILY SSF51735 1 139 3.51E-12 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 156 3.6E-40 T 31-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 SUPERFAMILY SSF48179 184 307 4.08E-23 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 184 297 4.7E-17 T 31-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BRM88_01820 22c81359f8e2a0d48f1920332b55f8cf 312 Gene3D G3DSA:1.10.1040.10 183 312 5.4E-18 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_02065 46cf54a33cf7d330b734a6a4b44d179b 529 Pfam PF08811 Protein of unknown function (DUF1800) 52 527 2.0E-127 T 31-10-2018 IPR014917 Protein of unknown function DUF1800 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 152 5.0E-48 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 115 149 - T 31-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 SUPERFAMILY SSF53098 3 156 3.03E-47 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 Gene3D G3DSA:3.30.420.10 4 160 1.3E-44 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 156 3.9E-50 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.0E-35 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 140 152 1.0E-35 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 109 128 1.0E-35 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 63 79 1.0E-35 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 85 101 1.0E-35 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_08585 0fb11bdad7bbf7b0565e08079b787fad 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 155 45.028 T 31-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 PIRSF PIRSF006305 1 190 8.1E-47 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 1.9E-46 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 Hamap MF_00528 Septum formation protein Maf [maf]. 1 190 28.864 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 Pfam PF02545 Maf-like protein 2 186 1.1E-51 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 SUPERFAMILY SSF52972 1 185 3.07E-57 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_17665 8fb96e6ab0d89de3e737ab15938be9e1 190 Gene3D G3DSA:3.90.950.10 1 190 6.4E-62 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 5 102 1.5E-44 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 Pfam PF00338 Ribosomal protein S10p/S20e 8 102 2.8E-34 T 31-10-2018 IPR027486 Ribosomal protein S10 domain BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 PRINTS PR00971 Ribosomal protein S10 family signature 41 56 3.8E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 PRINTS PR00971 Ribosomal protein S10 family signature 6 19 3.8E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 PRINTS PR00971 Ribosomal protein S10 family signature 62 76 3.8E-18 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 ProSitePatterns PS00361 Ribosomal protein S10 signature. 30 45 - T 31-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 4 103 26.611 T 31-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 Gene3D G3DSA:3.30.70.600 2 104 2.2E-36 T 31-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 SMART SM01403 8 102 1.4E-54 T 31-10-2018 IPR027486 Ribosomal protein S10 domain BRM88_19120 a36e4098930008b67dfd8fbb2dae3cbe 104 SUPERFAMILY SSF54999 6 103 1.83E-36 T 31-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 Gene3D G3DSA:3.30.379.10 27 177 4.0E-28 T 31-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 Pfam PF07555 beta-N-acetylglucosaminidase 183 493 1.2E-101 T 31-10-2018 IPR011496 Beta-N-acetylglucosaminidase MetaCyc: PWY-7437 BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 36 177 2.9E-20 T 31-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 Gene3D G3DSA:3.20.20.80 179 498 1.6E-101 T 31-10-2018 BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 SUPERFAMILY SSF55545 33 178 3.53E-24 T 31-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 Gene3D G3DSA:1.20.58.460 499 652 1.8E-9 T 31-10-2018 BRM88_01015 6fee0eaf8629789e6fc15acdfc737340 661 SUPERFAMILY SSF51445 180 509 5.05E-99 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_18460 1948a2b838913bf0049d4b90a0984926 102 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 98 1.1E-13 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BRM88_18460 1948a2b838913bf0049d4b90a0984926 102 Gene3D G3DSA:3.30.2310.20 2 99 2.5E-7 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_23030 b8816561ece8b111587541bbada0d36a 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 330 1.8E-36 T 31-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BRM88_23030 b8816561ece8b111587541bbada0d36a 342 SUPERFAMILY SSF51726 4 338 7.46E-65 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BRM88_23030 b8816561ece8b111587541bbada0d36a 342 PIRSF PIRSF005632 1 342 2.1E-195 T 31-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit BRM88_23030 b8816561ece8b111587541bbada0d36a 342 Gene3D G3DSA:3.20.20.210 1 342 1.0E-130 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BRM88_16455 893363750139536ab65c3260ad49d91f 253 Gene3D G3DSA:3.30.70.100 1 94 9.2E-30 T 31-10-2018 BRM88_16455 893363750139536ab65c3260ad49d91f 253 SMART SM00450 117 218 1.5E-11 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_16455 893363750139536ab65c3260ad49d91f 253 Pfam PF00581 Rhodanese-like domain 118 212 2.1E-5 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_16455 893363750139536ab65c3260ad49d91f 253 SUPERFAMILY SSF52821 103 233 8.25E-25 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_16455 893363750139536ab65c3260ad49d91f 253 Gene3D G3DSA:3.40.250.10 98 247 1.8E-32 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_16455 893363750139536ab65c3260ad49d91f 253 Hamap MF_00469 UPF0176 protein YceA [yceA]. 1 244 33.049 T 31-10-2018 IPR020936 Uncharacterised protein family UPF0176 BRM88_14650 a68e1afd77631198d608aa40506f3212 454 Gene3D G3DSA:3.40.309.10 231 420 1.0E-148 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_14650 a68e1afd77631198d608aa40506f3212 454 SUPERFAMILY SSF53720 3 453 5.37E-138 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_14650 a68e1afd77631198d608aa40506f3212 454 Pfam PF00171 Aldehyde dehydrogenase family 3 451 1.5E-137 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_14650 a68e1afd77631198d608aa40506f3212 454 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 255 266 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BRM88_14650 a68e1afd77631198d608aa40506f3212 454 Gene3D G3DSA:3.40.605.10 8 446 1.0E-148 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_12950 7af28973ffeacc2b058c5bdf46512d9b 232 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 18 135 6.6E-28 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BRM88_12950 7af28973ffeacc2b058c5bdf46512d9b 232 Gene3D G3DSA:3.10.50.40 130 232 2.8E-14 T 31-10-2018 BRM88_12950 7af28973ffeacc2b058c5bdf46512d9b 232 Gene3D G3DSA:1.10.287.460 19 129 1.8E-25 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 BRM88_12950 7af28973ffeacc2b058c5bdf46512d9b 232 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 181 229 3.5E-7 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BRM88_12950 7af28973ffeacc2b058c5bdf46512d9b 232 SUPERFAMILY SSF54534 27 232 2.51E-33 T 31-10-2018 BRM88_05660 91af098ca7ed04f8096c907d13eaad07 259 Pfam PF13531 Bacterial extracellular solute-binding protein 28 253 6.2E-35 T 31-10-2018 BRM88_05660 91af098ca7ed04f8096c907d13eaad07 259 SUPERFAMILY SSF53850 27 254 1.23E-38 T 31-10-2018 BRM88_05660 91af098ca7ed04f8096c907d13eaad07 259 Gene3D G3DSA:3.40.190.10 29 250 1.7E-26 T 31-10-2018 BRM88_05660 91af098ca7ed04f8096c907d13eaad07 259 Gene3D G3DSA:3.40.190.10 110 217 1.7E-26 T 31-10-2018 BRM88_15080 2668d5ed613337725f30c67796d1ddb1 324 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 57 1.8E-22 T 31-10-2018 IPR025713 Motility protein B, N-terminal domain BRM88_15080 2668d5ed613337725f30c67796d1ddb1 324 Pfam PF00691 OmpA family 167 265 1.8E-17 T 31-10-2018 IPR006665 OmpA-like domain BRM88_15080 2668d5ed613337725f30c67796d1ddb1 324 SUPERFAMILY SSF103088 142 271 1.57E-30 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_15080 2668d5ed613337725f30c67796d1ddb1 324 Gene3D G3DSA:3.30.1330.60 114 277 6.8E-45 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 35 360 1.9E-92 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 67 80 8.0E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 50 8.0E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 PRINTS PR00987 Glutamyl-tRNA synthetase signature 216 226 8.0E-8 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 52 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Gene3D G3DSA:2.40.240.10 372 490 9.3E-72 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 364 556 1.8E-53 T 31-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 35 579 4.8E-200 T 31-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 SUPERFAMILY SSF50715 364 575 3.5E-68 T 31-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Gene3D G3DSA:3.40.50.620 36 253 5.6E-94 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 SUPERFAMILY SSF52374 19 361 1.03E-89 T 31-10-2018 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 577 51.962 T 31-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Gene3D G3DSA:3.90.800.10 107 215 5.6E-94 T 31-10-2018 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Gene3D G3DSA:2.40.240.10 364 574 9.3E-72 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19815 b3b3faea8d644562001d8538dd6dc7b7 579 Gene3D G3DSA:1.10.1160.10 285 363 4.4E-33 T 31-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 BRM88_15035 8607e464213dca2a8e68f4fd18992da2 62 Pfam PF04314 Copper chaperone PCu(A)C 3 35 2.5E-5 T 31-10-2018 IPR007410 Copper chaperone PCuAC BRM88_15035 8607e464213dca2a8e68f4fd18992da2 62 SUPERFAMILY SSF110087 2 35 1.7E-7 T 31-10-2018 IPR036182 Copper chaperone PCuAC superfamily BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Hamap MF_00050 Elongation factor Ts [tsf]. 1 289 74.705 T 31-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 SUPERFAMILY SSF46934 1 55 2.01E-19 T 31-10-2018 IPR009060 UBA-like superfamily GO:0005515 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 31-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Pfam PF00889 Elongation factor TS 70 272 5.1E-65 T 31-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Gene3D G3DSA:1.10.8.10 1 55 4.8E-27 T 31-10-2018 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 SUPERFAMILY SSF54713 149 289 3.92E-46 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Gene3D G3DSA:3.30.479.20 153 271 3.5E-39 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Gene3D G3DSA:3.30.479.20 56 147 1.0E-24 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 31-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 289 2.6E-99 T 31-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 SUPERFAMILY SSF54713 55 144 2.13E-20 T 31-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BRM88_10310 ebd19f8a0c5c1d010eaf8e1f769887c9 292 Gene3D G3DSA:1.10.286.20 189 237 3.5E-39 T 31-10-2018 BRM88_13225 fcd575a337a6c5a74a6b9d7563ec1f18 206 PIRSF PIRSF004553 15 193 5.0E-43 T 31-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BRM88_13225 fcd575a337a6c5a74a6b9d7563ec1f18 206 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 13 191 7.4E-42 T 31-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BRM88_13225 fcd575a337a6c5a74a6b9d7563ec1f18 206 SUPERFAMILY SSF53335 15 191 2.41E-42 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_13225 fcd575a337a6c5a74a6b9d7563ec1f18 206 Pfam PF03602 Conserved hypothetical protein 95 16 190 5.1E-50 T 31-10-2018 BRM88_13225 fcd575a337a6c5a74a6b9d7563ec1f18 206 Gene3D G3DSA:3.40.50.150 5 198 1.0E-51 T 31-10-2018 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 2.4E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 SUPERFAMILY SSF48498 94 215 3.02E-8 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 Gene3D G3DSA:1.10.357.10 75 216 5.1E-35 T 31-10-2018 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 5.8E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 5.8E-11 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 SUPERFAMILY SSF46689 19 84 2.74E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 160 214 1.3E-17 T 31-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type BRM88_04720 9782efb20c8c69fe9bc8393abb9010f6 217 Gene3D G3DSA:1.10.10.60 18 73 6.7E-20 T 31-10-2018 BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Gene3D G3DSA:2.60.120.260 1138 1293 2.3E-27 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Gene3D G3DSA:2.60.120.260 874 1030 6.7E-29 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 SUPERFAMILY SSF49785 878 1028 9.22E-12 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Gene3D G3DSA:2.60.40.10 1046 1136 1.1E-7 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 SUPERFAMILY SSF48208 298 801 8.5E-17 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Pfam PF00754 F5/8 type C domain 891 1017 2.8E-7 T 31-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Pfam PF07532 Bacterial Ig-like domain (group 4) 1304 1355 2.0E-8 T 31-10-2018 IPR011081 Bacterial Ig-related BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Pfam PF07532 Bacterial Ig-like domain (group 4) 1381 1434 3.8E-11 T 31-10-2018 IPR011081 Bacterial Ig-related BRM88_16690 098b7b686df6d1a8ea574d59503aa380 1454 Gene3D G3DSA:1.50.10.10 419 627 8.1E-7 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_11935 1d7afaa0afcfaa46b0151859634ce819 209 Gene3D G3DSA:1.10.260.40 17 63 5.1E-5 T 31-10-2018 BRM88_11935 1d7afaa0afcfaa46b0151859634ce819 209 Pfam PF12472 Phage related protein 64 118 1.6E-9 T 31-10-2018 IPR021096 Vibrio phage VSK, Orf152 BRM88_21935 87e65e9e130e300bf6fc1816c3eb1d7e 320 SMART SM01126 137 285 3.7E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21935 87e65e9e130e300bf6fc1816c3eb1d7e 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21935 87e65e9e130e300bf6fc1816c3eb1d7e 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.3E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_21900 87e65e9e130e300bf6fc1816c3eb1d7e 320 SMART SM01126 137 285 3.7E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21900 87e65e9e130e300bf6fc1816c3eb1d7e 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21900 87e65e9e130e300bf6fc1816c3eb1d7e 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.3E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 636 759 1.0E-7 T 31-10-2018 IPR000014 PAS domain BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SMART SM00388 783 849 1.4E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SUPERFAMILY SSF52172 1028 1145 1.57E-19 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SMART SM00448 1029 1140 6.4E-15 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Pfam PF12860 PAS fold 643 757 1.2E-43 T 31-10-2018 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SMART SM00387 893 1004 1.1E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SUPERFAMILY SSF55785 628 750 3.32E-11 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Gene3D G3DSA:3.30.450.20 624 757 4.0E-16 T 31-10-2018 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 988 1001 7.8E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 947 957 7.8E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 929 943 7.8E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 PRINTS PR00344 Bacterial sensor protein C-terminal signature 964 982 7.8E-11 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Gene3D G3DSA:3.40.50.2300 1025 1149 6.9E-19 T 31-10-2018 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Gene3D G3DSA:3.30.565.10 854 1002 4.5E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SMART SM00091 637 706 0.0028 T 31-10-2018 IPR000014 PAS domain BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SUPERFAMILY SSF47384 768 850 1.47E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Pfam PF00072 Response regulator receiver domain 1031 1138 8.6E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 SUPERFAMILY SSF55874 839 1002 1.96E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Gene3D G3DSA:1.10.287.130 770 851 2.0E-14 T 31-10-2018 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Pfam PF00512 His Kinase A (phospho-acceptor) domain 783 849 1.5E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_01630 2f176185513e43f426eb6fe863ffbae0 1149 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 894 1001 7.0E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_00810 93a8d760912e09a895c1de9e29bcccb5 261 SUPERFAMILY SSF55144 28 260 1.12E-54 T 31-10-2018 IPR009097 Cyclic phosphodiesterase BRM88_00810 93a8d760912e09a895c1de9e29bcccb5 261 Gene3D G3DSA:3.90.1140.10 16 261 1.1E-60 T 31-10-2018 BRM88_00810 93a8d760912e09a895c1de9e29bcccb5 261 Pfam PF08975 Domain of unknown function (DUF1868) 42 158 4.3E-30 T 31-10-2018 IPR015069 Domain of unknown function DUF1868 BRM88_00810 93a8d760912e09a895c1de9e29bcccb5 261 PIRSF PIRSF033949 1 261 1.5E-100 T 31-10-2018 IPR012390 Phosphoesterase SP1827 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SUPERFAMILY SSF52172 415 534 6.4E-27 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SMART SM00086 103 145 3.2E-8 T 31-10-2018 IPR001610 PAC motif BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SMART SM00091 28 97 3.2E-6 T 31-10-2018 IPR000014 PAS domain BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Gene3D G3DSA:3.30.565.10 232 403 1.6E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SMART SM00448 416 529 1.0E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Pfam PF13426 PAS domain 49 143 2.3E-22 T 31-10-2018 IPR000014 PAS domain BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 278 394 9.9E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 27 152 1.5E-18 T 31-10-2018 IPR000014 PAS domain BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 339 4.4E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 393 4.4E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 374 4.4E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 343 353 4.4E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SMART SM00388 160 230 2.3E-4 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Gene3D G3DSA:1.10.287.130 157 229 3.3E-17 T 31-10-2018 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Gene3D G3DSA:3.40.50.2300 414 536 5.1E-28 T 31-10-2018 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SUPERFAMILY SSF47384 151 227 3.34E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Gene3D G3DSA:3.30.450.20 27 156 1.2E-44 T 31-10-2018 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SMART SM00387 271 396 7.0E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SUPERFAMILY SSF55785 35 145 1.08E-28 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 Pfam PF00072 Response regulator receiver domain 418 530 8.1E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16825 55e298d0814d6e49973426d27e0ba15f 540 SUPERFAMILY SSF55874 220 394 1.27E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_04920 831c698e6074d260e44a5d62b3e56ccf 156 Pfam PF09900 Predicted membrane protein (DUF2127) 15 149 3.9E-36 T 31-10-2018 IPR021125 Protein of unknown function DUF2127 BRM88_20985 4280b624701d95c4907e99d6db86c735 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_20985 4280b624701d95c4907e99d6db86c735 245 SUPERFAMILY SSF51735 5 242 3.14E-70 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.4E-32 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 6.4E-54 T 31-10-2018 BRM88_20985 4280b624701d95c4907e99d6db86c735 245 Gene3D G3DSA:3.40.50.720 1 244 5.3E-69 T 31-10-2018 BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 3.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20985 4280b624701d95c4907e99d6db86c735 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SUPERFAMILY SSF88713 220 449 4.17E-48 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Pfam PF00656 Caspase domain 476 671 5.2E-22 T 31-10-2018 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SMART SM00028 854 887 0.0073 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SMART SM00028 786 819 3.3 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SMART SM00028 820 853 2.8 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SUPERFAMILY SSF52129 470 668 4.76E-18 T 31-10-2018 IPR029030 Caspase-like domain superfamily BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Gene3D G3DSA:1.25.40.10 758 899 6.8E-23 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Pfam PF01522 Polysaccharide deacetylase 253 384 4.1E-24 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Gene3D G3DSA:3.40.50.1460 473 708 9.2E-36 T 31-10-2018 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Pfam PF13432 Tetratricopeptide repeat 829 886 7.5E-9 T 31-10-2018 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 SUPERFAMILY SSF48452 777 893 1.66E-22 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 Gene3D G3DSA:3.20.20.370 224 451 2.1E-51 T 31-10-2018 BRM88_24635 dfea1ebbf198ea053863644cf56f4ae8 900 ProSitePatterns PS00018 EF-hand calcium-binding domain. 671 683 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 SMART SM00283 430 677 3.9E-92 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 SUPERFAMILY SSF158472 206 255 4.58E-8 T 31-10-2018 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 490 644 7.8E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 176 4.7E-13 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 Gene3D G3DSA:1.20.120.1530 198 341 1.4E-22 T 31-10-2018 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 SMART SM00304 206 258 4.2E-4 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 SUPERFAMILY SSF58104 450 681 4.71E-71 T 31-10-2018 BRM88_15165 75a8d9628797bbbf237dee2cc95a2d24 691 Gene3D G3DSA:1.10.287.950 391 679 2.2E-80 T 31-10-2018 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 SUPERFAMILY SSF47819 193 282 1.37E-15 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 Hamap MF_01899 Ribonuclease D [rnd]. 2 359 36.65 T 31-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 Gene3D G3DSA:1.10.150.80 196 287 6.2E-10 T 31-10-2018 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 TIGRFAM TIGR01388 rnd: ribonuclease D 4 358 3.0E-117 T 31-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 Gene3D G3DSA:3.30.420.10 4 190 2.9E-56 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 SMART SM00474 2 169 9.5E-32 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 Pfam PF00570 HRDC domain 213 258 1.9E-5 T 31-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 SUPERFAMILY SSF47819 293 359 1.96E-10 T 31-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 Pfam PF01612 3'-5' exonuclease 10 168 8.9E-29 T 31-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BRM88_14445 92edc362c87e2e299fb6a10dd1a380da 363 SUPERFAMILY SSF53098 12 192 5.69E-55 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_13995 b78b31177fcc78bba67bdf927e92f166 318 Pfam PF13936 Helix-turn-helix domain 3 45 1.2E-14 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_13995 b78b31177fcc78bba67bdf927e92f166 318 Gene3D G3DSA:3.30.420.10 156 316 3.7E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_13995 b78b31177fcc78bba67bdf927e92f166 318 SUPERFAMILY SSF53098 163 308 5.77E-22 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_13995 b78b31177fcc78bba67bdf927e92f166 318 Pfam PF00665 Integrase core domain 173 266 1.3E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_10940 21848244a08a5d03835f300aa3fb9cf6 321 SMART SM01126 137 282 2.4E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10940 21848244a08a5d03835f300aa3fb9cf6 321 Pfam PF12762 ISXO2-like transposase domain 137 282 6.3E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10940 21848244a08a5d03835f300aa3fb9cf6 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_17280 51b179030add87b216607f43ae81f45d 184 SUPERFAMILY SSF56770 35 179 8.11E-66 T 31-10-2018 BRM88_17280 51b179030add87b216607f43ae81f45d 184 Gene3D G3DSA:3.40.50.12280 22 184 6.6E-78 T 31-10-2018 BRM88_17280 51b179030add87b216607f43ae81f45d 184 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 63 172 5.0E-23 T 31-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17280 51b179030add87b216607f43ae81f45d 184 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 38 177 2.2E-76 T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17280 51b179030add87b216607f43ae81f45d 184 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 144 160 - T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17280 51b179030add87b216607f43ae81f45d 184 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 177 41.238 T 31-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_14130 faa75a15bda46794442c1219f5c21666 93 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.869 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BRM88_14130 faa75a15bda46794442c1219f5c21666 93 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 82 6.1E-27 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BRM88_14130 faa75a15bda46794442c1219f5c21666 93 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 23 75 5.0E-24 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BRM88_14130 faa75a15bda46794442c1219f5c21666 93 SMART SM01234 8 75 9.2E-43 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BRM88_14130 faa75a15bda46794442c1219f5c21666 93 Pfam PF01809 Haemolytic domain 10 75 2.6E-28 T 31-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BRM88_01145 8e83c3a1cc83bc2c10bc09115827c27d 253 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 1 250 41.762 T 31-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 BRM88_01145 8e83c3a1cc83bc2c10bc09115827c27d 253 SUPERFAMILY SSF53474 2 249 4.12E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01145 8e83c3a1cc83bc2c10bc09115827c27d 253 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 8 249 1.6E-88 T 31-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 BRM88_01145 8e83c3a1cc83bc2c10bc09115827c27d 253 Gene3D G3DSA:3.40.50.1820 1 252 2.2E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01145 8e83c3a1cc83bc2c10bc09115827c27d 253 Pfam PF12697 Alpha/beta hydrolase family 12 244 6.5E-20 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Gene3D G3DSA:4.10.320.10 121 160 4.4E-8 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 SUPERFAMILY SSF52777 170 398 1.82E-88 T 31-10-2018 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Pfam PF02817 e3 binding domain 123 153 1.2E-6 T 31-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 170 397 2.7E-83 T 31-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Pfam PF00364 Biotin-requiring enzyme 4 76 1.9E-19 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 31-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 SUPERFAMILY SSF47005 114 158 2.88E-8 T 31-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Gene3D G3DSA:3.30.559.10 168 399 1.1E-95 T 31-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 Gene3D G3DSA:2.40.50.100 1 102 6.6E-24 T 31-10-2018 BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 SUPERFAMILY SSF51230 1 95 1.96E-26 T 31-10-2018 IPR011053 Single hybrid motif BRM88_10635 4d1d96a3c487d2104e8e0855f0585c5f 400 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 399 3.1E-177 T 31-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BRM88_13205 7d3ee4ea4b54c707865a4395199b44a2 94 SUPERFAMILY SSF54862 7 72 4.97E-18 T 31-10-2018 BRM88_13205 7d3ee4ea4b54c707865a4395199b44a2 94 Pfam PF12838 4Fe-4S dicluster domain 9 57 1.7E-6 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BRM88_13205 7d3ee4ea4b54c707865a4395199b44a2 94 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_13205 7d3ee4ea4b54c707865a4395199b44a2 94 Gene3D G3DSA:3.30.70.20 2 81 4.4E-30 T 31-10-2018 BRM88_20500 f4e555f6722c9fb4e1512658e0bf5e5a 209 PIRSF PIRSF001296 10 198 1.5E-69 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BRM88_20500 f4e555f6722c9fb4e1512658e0bf5e5a 209 Pfam PF02669 K+-transporting ATPase, c chain 16 193 5.5E-64 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BRM88_20500 f4e555f6722c9fb4e1512658e0bf5e5a 209 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 10 194 32.273 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BRM88_20500 f4e555f6722c9fb4e1512658e0bf5e5a 209 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 16 193 7.4E-52 T 31-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 31-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PIRSF PIRSF000349 1 192 2.0E-71 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.0E-14 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.0E-14 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 1.0E-14 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.0E-14 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.0E-14 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 SUPERFAMILY SSF46609 2 82 9.3E-23 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 Gene3D G3DSA:2.40.500.20 87 192 3.3E-40 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 SUPERFAMILY SSF54719 86 191 1.31E-40 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 Gene3D G3DSA:1.10.287.990 21 81 2.0E-16 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 2.6E-36 T 31-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_17150 86893ad42a41adba8369b5a84b00b72b 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 7 81 1.8E-19 T 31-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 Gene3D G3DSA:3.90.1170.10 1 137 2.6E-57 T 31-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.9E-49 T 31-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 SUPERFAMILY SSF54686 1 134 4.19E-54 T 31-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.58 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 31-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.7E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.7E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.7E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.7E-39 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 31-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19080 0c14d1c3da4c1760e9edb9587ff534e5 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.6E-57 T 31-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 SUPERFAMILY SSF52518 6 329 9.63E-121 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 6 336 4.2E-154 T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 TIGRFAM TIGR00232 tktlase_bact: transketolase 8 666 9.8E-285 T 31-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 ProSitePatterns PS00802 Transketolase signature 2. 470 486 - T 31-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 SUPERFAMILY SSF52518 348 529 4.42E-63 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Pfam PF02780 Transketolase, C-terminal domain 553 659 9.7E-18 T 31-10-2018 IPR033248 Transketolase, C-terminal domain BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 SMART SM00861 357 529 1.4E-62 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Gene3D G3DSA:3.40.50.970 5 328 2.1E-131 T 31-10-2018 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 SUPERFAMILY SSF52922 536 666 1.18E-42 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Gene3D G3DSA:3.40.50.970 329 540 6.3E-75 T 31-10-2018 BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Pfam PF02779 Transketolase, pyrimidine binding domain 356 528 1.3E-42 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_05990 ff8821ec9160ee40591cb73c4b5eacc9 666 Gene3D G3DSA:3.40.50.920 542 666 1.1E-43 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 Gene3D G3DSA:1.20.120.140 256 531 6.1E-104 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 260 532 2.8E-100 T 31-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 Gene3D G3DSA:3.40.50.300 329 521 6.1E-104 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 SUPERFAMILY SSF52540 283 528 7.87E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 SMART SM00963 238 317 7.0E-19 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 506 519 - T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 Pfam PF00448 SRP54-type protein, GTPase domain 332 532 1.4E-72 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 SMART SM00382 331 511 1.8E-5 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 Pfam PF02881 SRP54-type protein, helical bundle domain 249 311 6.4E-11 T 31-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 PRINTS PR01217 Proline rich extensin signature 170 195 5.0E-9 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 PRINTS PR01217 Proline rich extensin signature 76 88 5.0E-9 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 PRINTS PR01217 Proline rich extensin signature 32 44 5.0E-9 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 PRINTS PR01217 Proline rich extensin signature 152 169 5.0E-9 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 PRINTS PR01217 Proline rich extensin signature 112 133 5.0E-9 T 31-10-2018 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 SMART SM00962 332 533 1.5E-109 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_16800 3f2ce0a6ab6fc32cd5adc7b8fd139986 538 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 260 533 62.789 T 31-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BRM88_22685 4803d7697f72770802f9c842a9a7b319 139 Gene3D G3DSA:3.30.750.24 5 122 4.0E-20 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_22685 4803d7697f72770802f9c842a9a7b319 139 SUPERFAMILY SSF52091 13 110 1.47E-18 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_22685 4803d7697f72770802f9c842a9a7b319 139 Pfam PF13466 STAS domain 20 95 6.8E-11 T 31-10-2018 IPR002645 STAS domain BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 SUPERFAMILY SSF50249 3 125 8.91E-48 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Gene3D G3DSA:4.10.950.10 196 274 5.2E-34 T 31-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 31-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Gene3D G3DSA:2.30.30.30 115 195 1.6E-30 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 SMART SM01382 124 253 4.3E-87 T 31-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 46.926 T 31-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 SMART SM01383 42 118 2.1E-42 T 31-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 5.2E-34 T 31-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 2.7E-53 T 31-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 Gene3D G3DSA:2.40.50.140 1 114 6.5E-48 T 31-10-2018 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 274 1.3E-130 T 31-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 PIRSF PIRSF002158 6 275 4.6E-97 T 31-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19100 3f62ea9e48a14a976666416eb738e602 275 SUPERFAMILY SSF50104 127 273 8.42E-57 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 12 204 7.2E-70 T 31-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 Pfam PF00005 ABC transporter 30 165 2.1E-24 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 SUPERFAMILY SSF52540 10 211 2.04E-39 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 SMART SM00382 36 213 1.2E-6 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_11230 4ac88e97b2cf922a19c471edb7a2b3e8 214 Gene3D G3DSA:3.40.50.300 6 213 2.6E-39 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 11 200 3.0E-39 T 31-10-2018 IPR003111 Lon, substrate-binding domain BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 585 787 2.4E-94 T 31-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Gene3D G3DSA:1.20.58.1480 122 246 1.9E-42 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 691 699 - T 31-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 SUPERFAMILY SSF88697 10 202 5.72E-48 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Gene3D G3DSA:3.30.230.10 600 787 8.2E-80 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 SMART SM00464 10 203 3.2E-70 T 31-10-2018 IPR003111 Lon, substrate-binding domain BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Gene3D G3DSA:2.30.130.40 1 117 8.5E-34 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 SMART SM00382 349 495 4.0E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 688 707 5.3E-53 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 357 376 5.3E-53 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 610 626 5.3E-53 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 741 759 5.3E-53 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 718 737 5.3E-53 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Hamap MF_01973 Lon protease [lon]. 11 787 72.44 T 31-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Gene3D G3DSA:1.10.8.60 492 599 8.8E-30 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 TIGRFAM TIGR00763 lon: endopeptidase La 12 786 0.0 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 SUPERFAMILY SSF54211 610 785 3.68E-57 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 SUPERFAMILY SSF52540 315 603 1.46E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Gene3D G3DSA:3.40.50.300 315 491 4.4E-63 T 31-10-2018 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 353 489 5.8E-18 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_05190 32d632976e83c4e47baf7736f538fab9 823 PIRSF PIRSF001174 1 789 0.0 T 31-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 16 47 - T 31-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 SUPERFAMILY SSF46557 4 77 6.54E-28 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 Gene3D G3DSA:3.10.50.30 75 157 7.5E-29 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 1.9E-26 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 1 155 33.085 T 31-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 4 154 1.5E-57 T 31-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 SUPERFAMILY SSF54534 82 156 2.09E-22 T 31-10-2018 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 5.7E-31 T 31-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 Gene3D G3DSA:1.10.287.180 1 74 5.8E-31 T 31-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BRM88_15380 acb2d73c5358fd4bbb289c7b270cff49 158 PIRSF PIRSF006092 1 158 3.3E-50 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Gene3D G3DSA:2.60.40.1120 43 124 1.8E-5 T 31-10-2018 BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Pfam PF00593 TonB dependent receptor 389 1034 6.5E-17 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 SUPERFAMILY SSF56935 132 1037 3.19E-70 T 31-10-2018 BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Gene3D G3DSA:2.40.170.20 810 1037 4.2E-9 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Gene3D G3DSA:2.40.170.20 316 692 4.7E-24 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 SUPERFAMILY SSF49452 46 123 1.61E-7 T 31-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Pfam PF07715 TonB-dependent Receptor Plug Domain 151 251 8.8E-9 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Pfam PF13620 Carboxypeptidase regulatory-like domain 61 123 1.6E-11 T 31-10-2018 BRM88_17680 7b797de45bf1467dc64134ac1975ad51 1037 Gene3D G3DSA:2.170.130.10 133 255 3.4E-8 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_19595 7cba22ab6b54abf2786ae91a4f426b25 378 Gene3D G3DSA:3.40.50.2000 175 347 2.6E-59 T 31-10-2018 BRM88_19595 7cba22ab6b54abf2786ae91a4f426b25 378 SUPERFAMILY SSF53756 2 363 2.3E-74 T 31-10-2018 BRM88_19595 7cba22ab6b54abf2786ae91a4f426b25 378 Gene3D G3DSA:3.40.50.2000 5 174 2.6E-59 T 31-10-2018 BRM88_19595 7cba22ab6b54abf2786ae91a4f426b25 378 Pfam PF00534 Glycosyl transferases group 1 190 344 2.7E-25 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_19595 7cba22ab6b54abf2786ae91a4f426b25 378 Pfam PF13439 Glycosyltransferase Family 4 14 177 2.1E-24 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BRM88_12550 29072e397368238425791f9cfc118e59 306 Pfam PF02649 Type I GTP cyclohydrolase folE2 5 292 7.3E-68 T 31-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 BRM88_12550 29072e397368238425791f9cfc118e59 306 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 5 297 33.02 T 31-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 Gene3D G3DSA:3.30.2350.20 17 352 1.1E-112 T 31-10-2018 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 18 169 2.3E-36 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 198 351 2.8E-17 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 5 357 28.445 T 31-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 Gene3D G3DSA:3.30.2340.10 168 316 1.1E-112 T 31-10-2018 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 SUPERFAMILY SSF55120 5 352 3.16E-87 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_15775 944cd507450d8ce7af2ea0ae79800d86 369 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 77 90 - T 31-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 BRM88_09015 d5019246ee165666cb3298a546631ac7 880 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 162 4.2E-15 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_09015 d5019246ee165666cb3298a546631ac7 880 Gene3D G3DSA:2.170.130.10 24 167 6.2E-14 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_09015 d5019246ee165666cb3298a546631ac7 880 Gene3D G3DSA:2.40.170.20 185 880 8.1E-50 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_09015 d5019246ee165666cb3298a546631ac7 880 SUPERFAMILY SSF56935 20 880 6.54E-89 T 31-10-2018 BRM88_09015 d5019246ee165666cb3298a546631ac7 880 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 33 880 4.7E-169 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_09015 d5019246ee165666cb3298a546631ac7 880 Pfam PF00593 TonB dependent receptor 413 876 1.1E-29 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06965 3c9c623902b3fc0ab81d4d6f12898593 408 Gene3D G3DSA:3.30.470.20 111 401 6.3E-37 T 31-10-2018 BRM88_06965 3c9c623902b3fc0ab81d4d6f12898593 408 SUPERFAMILY SSF56059 97 318 3.91E-30 T 31-10-2018 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Gene3D G3DSA:1.10.1420.10 376 492 8.3E-94 T 31-10-2018 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Pfam PF05188 MutS domain II 119 242 4.3E-29 T 31-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 1 843 24.305 T 31-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Gene3D G3DSA:1.10.1420.10 256 548 8.3E-94 T 31-10-2018 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SUPERFAMILY SSF55271 1 105 1.57E-38 T 31-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Gene3D G3DSA:3.40.1170.10 1 111 1.4E-45 T 31-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Pfam PF05190 MutS family domain IV 417 508 9.1E-29 T 31-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 677 693 - T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 1 848 0.0 T 31-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Pfam PF01624 MutS domain I 1 109 6.1E-39 T 31-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SUPERFAMILY SSF52540 556 792 1.48E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SUPERFAMILY SSF48334 257 554 3.53E-82 T 31-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Gene3D G3DSA:3.30.420.110 118 250 2.2E-36 T 31-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SMART SM00534 596 788 6.4E-111 T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Pfam PF00488 MutS domain V 599 791 1.0E-81 T 31-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SUPERFAMILY SSF53150 104 255 4.05E-41 T 31-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Pfam PF05192 MutS domain III 259 548 8.6E-35 T 31-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 PIRSF PIRSF037677 1 177 1.2E-22 T 31-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 PIRSF PIRSF037677 208 830 3.5E-116 T 31-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 Gene3D G3DSA:3.40.50.300 559 848 5.8E-97 T 31-10-2018 BRM88_08500 ddd9a78af8f23c9b410a45d0fce352df 851 SMART SM00533 273 580 8.3E-89 T 31-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:3.30.1480.10 1 133 8.5E-40 T 31-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF54814 283 346 8.5E-15 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:3.30.300.20 282 350 1.3E-24 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Pfam PF13184 NusA-like KH domain 234 301 1.4E-27 T 31-10-2018 IPR025249 KH domain, NusA-like GO:0003723 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF50249 135 203 7.8E-19 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:3.30.300.20 203 281 1.2E-29 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Pfam PF14520 Helix-hairpin-helix domain 436 492 3.7E-7 T 31-10-2018 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 369 418 2.2E-22 T 31-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 444 494 4.8E-17 T 31-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:1.10.150.20 435 494 3.1E-18 T 31-10-2018 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Pfam PF08529 NusA N-terminal domain 4 128 3.9E-35 T 31-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SMART SM00316 137 204 5.5E-8 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SMART SM00322 234 297 21.0 T 31-10-2018 IPR004087 K Homology domain GO:0003676 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SMART SM00322 305 368 0.014 T 31-10-2018 IPR004087 K Homology domain GO:0003676 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF47794 433 493 1.88E-9 T 31-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:1.10.150.20 356 425 1.3E-26 T 31-10-2018 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Pfam PF00575 S1 RNA binding domain 135 199 1.6E-7 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF54814 205 282 1.18E-28 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 414 29.343 T 31-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF47794 360 419 8.32E-16 T 31-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 SUPERFAMILY SSF69705 1 130 1.07E-36 T 31-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 Gene3D G3DSA:2.40.50.140 139 202 1.6E-19 T 31-10-2018 BRM88_17205 4db8ea446747f59b4ffe12bbdd6b7c50 503 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 6.0E-125 T 31-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 BRM88_17565 1cfb83a9d4773a93ac4aaad9dec9cb4d 159 SUPERFAMILY SSF54534 2 139 4.91E-33 T 31-10-2018 BRM88_17565 1cfb83a9d4773a93ac4aaad9dec9cb4d 159 Gene3D G3DSA:3.10.50.40 3 153 3.4E-49 T 31-10-2018 BRM88_17565 1cfb83a9d4773a93ac4aaad9dec9cb4d 159 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 135 4.2E-10 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BRM88_17565 1cfb83a9d4773a93ac4aaad9dec9cb4d 159 Gene3D G3DSA:2.40.10.330 71 120 3.4E-49 T 31-10-2018 BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 Pfam PF00183 Hsp90 protein 278 357 2.6E-8 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 PIRSF PIRSF002583 3 614 1.8E-101 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 SUPERFAMILY SSF55874 14 208 1.84E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 SUPERFAMILY SSF54211 219 458 3.49E-33 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 Gene3D G3DSA:3.30.230.80 232 383 2.8E-13 T 31-10-2018 BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 Gene3D G3DSA:3.30.565.10 14 210 2.4E-38 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 PRINTS PR00775 90kDa heat shock protein signature 34 56 9.3E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 PRINTS PR00775 90kDa heat shock protein signature 170 187 9.3E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 PRINTS PR00775 90kDa heat shock protein signature 188 206 9.3E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 PRINTS PR00775 90kDa heat shock protein signature 118 140 9.3E-13 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_07070 4278b9edb9ea8fb7a193a162cc91911a 622 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 166 1.3E-8 T 31-10-2018 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 SUPERFAMILY SSF52738 185 371 1.96E-70 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 Gene3D G3DSA:3.40.50.180 179 373 2.0E-75 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 Pfam PF01339 CheB methylesterase 190 368 9.6E-61 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 SMART SM00448 19 142 3.4E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 Gene3D G3DSA:3.40.50.2300 17 148 9.3E-30 T 31-10-2018 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 19 373 40.267 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 SUPERFAMILY SSF52172 17 152 9.82E-28 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 PIRSF PIRSF000876 16 373 4.9E-133 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_07620 5ca00db2c43b1b9bebed7e0eee69ca87 373 Pfam PF00072 Response regulator receiver domain 22 123 1.6E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05665 809cc0402a33b91792f0136a28fadec1 449 Pfam PF00083 Sugar (and other) transporter 29 227 2.7E-23 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BRM88_05665 809cc0402a33b91792f0136a28fadec1 449 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_05665 809cc0402a33b91792f0136a28fadec1 449 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_05665 809cc0402a33b91792f0136a28fadec1 449 SUPERFAMILY SSF103473 26 432 3.14E-61 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_05665 809cc0402a33b91792f0136a28fadec1 449 Gene3D G3DSA:1.20.1250.20 23 437 6.6E-56 T 31-10-2018 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 SUPERFAMILY SSF56988 484 659 3.66E-49 T 31-10-2018 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Pfam PF14310 Fibronectin type III-like domain 819 890 2.2E-19 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 SMART SM00758 483 632 4.4E-30 T 31-10-2018 IPR011658 PA14 domain BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Gene3D G3DSA:2.60.40.10 785 903 5.4E-33 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Pfam PF07691 PA14 domain 485 629 4.8E-30 T 31-10-2018 IPR011658 PA14 domain BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 PRINTS PR00133 Glycosyl hydrolase family 3 signature 98 117 7.0E-8 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 PRINTS PR00133 Glycosyl hydrolase family 3 signature 273 291 7.0E-8 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 SUPERFAMILY SSF51445 35 390 2.74E-95 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Gene3D G3DSA:3.20.20.300 30 366 5.2E-102 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Gene3D G3DSA:3.40.50.1700 566 784 1.6E-58 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Gene3D G3DSA:3.40.50.1700 376 485 6.3E-20 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 59 349 6.3E-50 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 SUPERFAMILY SSF52279 391 785 1.31E-54 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 SMART SM01217 819 890 6.8E-27 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_23510 0aeed4d0d36ead1025c3cec1ab10b061 904 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 391 782 1.5E-62 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 19 347 2.3E-63 T 31-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 SUPERFAMILY SSF56194 220 348 3.4E-43 T 31-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 SUPERFAMILY SSF56176 17 200 2.73E-36 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 350 79.835 T 31-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 222 346 9.9E-32 T 31-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Pfam PF01565 FAD binding domain 33 152 2.5E-16 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Gene3D G3DSA:3.30.465.10 82 234 9.0E-51 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Gene3D G3DSA:3.30.43.10 8 79 1.3E-18 T 31-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BRM88_11645 d10d64aa66d9b41dc5ec4d8190353555 350 Gene3D G3DSA:3.90.78.10 235 350 5.7E-41 T 31-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 43.182 T 31-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 SUPERFAMILY SSF55282 4 180 8.95E-77 T 31-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 PIRSF PIRSF002161 1 180 2.8E-65 T 31-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 Gene3D G3DSA:3.30.1440.10 1 180 4.4E-77 T 31-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 Pfam PF00281 Ribosomal protein L5 25 81 1.6E-27 T 31-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 Pfam PF00673 ribosomal L5P family C-terminus 85 178 1.2E-39 T 31-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19055 bfb74ae9a26712de5dc5cbf4f7ca5eab 180 ProSitePatterns PS00358 Ribosomal protein L5 signature. 58 74 - T 31-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_21300 abe9fd9b019beabfb8603a18638bf10e 78 Pfam PF13627 Prokaryotic lipoprotein-attachment site 11 33 9.0E-7 T 31-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 SUPERFAMILY SSF51735 6 246 4.5E-81 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.3E-46 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 Gene3D G3DSA:3.40.50.720 2 247 1.5E-81 T 31-10-2018 BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 244 1.7E-63 T 31-10-2018 BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 10 245 1.0E-97 T 31-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 190 1.6E-4 T 31-10-2018 BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_04450 dd008fd0e8ad5cd391a7641417cdc39e 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.0E-14 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SUPERFAMILY SSF52172 10 143 1.39E-26 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SMART SM00448 381 493 0.011 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SMART SM00448 11 122 8.9E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Gene3D G3DSA:3.40.50.2300 379 500 1.6E-11 T 31-10-2018 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SUPERFAMILY SSF55874 206 362 1.44E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SUPERFAMILY SSF52172 379 498 3.98E-15 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 259 361 9.0E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Pfam PF00072 Response regulator receiver domain 13 122 4.1E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Pfam PF00072 Response regulator receiver domain 383 459 4.0E-5 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Gene3D G3DSA:1.10.287.130 140 212 5.2E-9 T 31-10-2018 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 2.6E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 341 2.6E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 360 2.6E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 322 2.6E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SMART SM00388 150 215 4.0E-4 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SMART SM00387 256 363 2.8E-27 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 SUPERFAMILY SSF47384 145 213 4.9E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Gene3D G3DSA:3.30.565.10 214 367 3.0E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20995 6d90b323dca4e535b0955933f64ee1bb 500 Gene3D G3DSA:3.40.50.2300 4 139 6.1E-24 T 31-10-2018 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 Gene3D G3DSA:3.10.20.70 13 124 3.5E-9 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 Pfam PF00120 Glutamine synthetase, catalytic domain 124 455 1.4E-105 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 Gene3D G3DSA:3.30.590.10 126 459 8.8E-102 T 31-10-2018 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 SMART SM01230 123 380 5.9E-104 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 SUPERFAMILY SSF54368 19 122 6.28E-24 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 SUPERFAMILY SSF55931 123 458 2.84E-107 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_14700 1d9f3136ed0e13885a1b97f629525238 461 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 Gene3D G3DSA:2.60.120.10 148 255 2.2E-99 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 SUPERFAMILY SSF51182 10 285 1.68E-87 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 Pfam PF02678 Pirin 26 126 3.9E-38 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 Gene3D G3DSA:2.60.120.10 22 281 2.2E-99 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 Pfam PF05726 Pirin C-terminal cupin domain 181 285 3.3E-29 T 31-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 BRM88_07450 f1e7f7687d233e920e08951dc7cb2181 285 PIRSF PIRSF006232 7 285 3.0E-96 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BRM88_01845 fbaa60e274a45cc67c9896bf27770f2e 333 SUPERFAMILY SSF161111 22 252 4.32E-52 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_01845 fbaa60e274a45cc67c9896bf27770f2e 333 Gene3D G3DSA:1.20.1510.10 177 251 1.8E-7 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_01845 fbaa60e274a45cc67c9896bf27770f2e 333 Gene3D G3DSA:1.20.1510.10 23 164 2.2E-24 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_01845 fbaa60e274a45cc67c9896bf27770f2e 333 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 324 3.9E-68 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_01845 fbaa60e274a45cc67c9896bf27770f2e 333 Pfam PF01545 Cation efflux family 30 251 2.2E-38 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_23205 2eb5a177be69895c902d0e2bcfba5720 192 Gene3D G3DSA:1.10.3330.10 2 155 8.6E-48 T 31-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BRM88_23205 2eb5a177be69895c902d0e2bcfba5720 192 Pfam PF09349 OHCU decarboxylase 3 152 1.4E-31 T 31-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BRM88_23205 2eb5a177be69895c902d0e2bcfba5720 192 SUPERFAMILY SSF158694 2 154 6.15E-40 T 31-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BRM88_23205 2eb5a177be69895c902d0e2bcfba5720 192 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 3 154 6.9E-47 T 31-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BRM88_19050 1953bc0195e93e3e9135a0c85e546a51 101 Gene3D G3DSA:4.10.830.10 41 101 3.8E-21 T 31-10-2018 BRM88_19050 1953bc0195e93e3e9135a0c85e546a51 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.258 T 31-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid BRM88_19050 1953bc0195e93e3e9135a0c85e546a51 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.9E-23 T 31-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19050 1953bc0195e93e3e9135a0c85e546a51 101 SUPERFAMILY SSF57716 2 101 1.07E-34 T 31-10-2018 BRM88_07975 170b8e84b55f659829549ab50b0d7593 177 Pfam PF13211 Protein of unknown function (DUF4019) 64 170 6.5E-28 T 31-10-2018 IPR025091 Protein of unknown function DUF4019 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 7.4E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 283 7.4E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Pfam PF12631 MnmE helical domain 123 443 6.7E-49 T 31-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 220 336 1.1E-21 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 120 1.4E-36 T 31-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Gene3D G3DSA:3.30.1360.120 1 121 5.5E-40 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Gene3D G3DSA:3.40.50.300 217 375 1.8E-93 T 31-10-2018 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 446 31.323 T 31-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Pfam PF01926 50S ribosome-binding GTPase 219 311 5.2E-23 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 Gene3D G3DSA:1.20.120.430 122 446 1.8E-93 T 31-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 SUPERFAMILY SSF52540 72 360 1.7E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24630 8bedc988d7d17242a7ef12e43b7bd7c3 446 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 14 446 1.3E-95 T 31-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 PIRSF PIRSF006288 6 869 5.3E-283 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Pfam PF08335 GlnD PII-uridylyltransferase 178 316 5.7E-29 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Pfam PF01909 Nucleotidyltransferase domain 72 121 6.0E-5 T 31-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 33 866 1.8E-224 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Gene3D G3DSA:3.30.70.260 795 867 2.2E-6 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SUPERFAMILY SSF55021 795 863 8.74E-11 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SUPERFAMILY SSF81593 198 317 9.42E-8 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SMART SM00471 446 593 7.8E-9 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 869 257.872 T 31-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Gene3D G3DSA:1.10.3210.10 441 561 3.9E-6 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SUPERFAMILY SSF81301 21 174 5.09E-16 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 Pfam PF01966 HD domain 451 570 5.3E-13 T 31-10-2018 IPR006674 HD domain BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SUPERFAMILY SSF109604 418 541 5.96E-13 T 31-10-2018 BRM88_10355 d741b7b24382fceeae79d99cbc05be8f 869 SUPERFAMILY SSF55021 688 757 3.21E-5 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 246 1.9E-58 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 Gene3D G3DSA:3.40.50.720 4 300 1.4E-92 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 7.4E-23 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 PRINTS PR01713 Nucleotide sugar epimerase signature 279 296 7.4E-23 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 PRINTS PR01713 Nucleotide sugar epimerase signature 214 229 7.4E-23 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 PRINTS PR01713 Nucleotide sugar epimerase signature 240 255 7.4E-23 T 31-10-2018 BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 SUPERFAMILY SSF51735 1 316 2.69E-90 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02520 c766f65f674636718210f4c8d2e3c0a4 321 Gene3D G3DSA:3.90.25.10 178 312 1.4E-92 T 31-10-2018 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 182 33.624 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 189 7.2E-57 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 SUPERFAMILY SSF53178 5 189 5.49E-64 T 31-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 9.6E-51 T 31-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 31-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BRM88_19230 8b30e90fac263bfb3a494406ba48f0d4 194 Gene3D G3DSA:3.40.50.1470 1 193 2.5E-62 T 31-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BRM88_21520 3dd9870aa852939628b744b26f22ac36 294 SUPERFAMILY SSF103481 191 280 1.31E-12 T 31-10-2018 BRM88_21520 3dd9870aa852939628b744b26f22ac36 294 Pfam PF00892 EamA-like transporter family 149 277 2.1E-7 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_21520 3dd9870aa852939628b744b26f22ac36 294 Pfam PF00892 EamA-like transporter family 6 139 2.2E-13 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_21520 3dd9870aa852939628b744b26f22ac36 294 SUPERFAMILY SSF103481 38 144 1.31E-15 T 31-10-2018 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Gene3D G3DSA:3.40.120.10 566 684 2.1E-42 T 31-10-2018 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 471 569 2.1E-28 T 31-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 SUPERFAMILY SSF53738 574 680 5.1E-34 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 689 770 3.1E-12 T 31-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 574 683 3.7E-24 T 31-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 SUPERFAMILY SSF55957 684 776 5.93E-19 T 31-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 325 453 2.7E-35 T 31-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Gene3D G3DSA:3.40.120.10 488 565 2.3E-32 T 31-10-2018 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 SUPERFAMILY SSF53738 471 571 2.83E-32 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 SUPERFAMILY SSF53738 318 493 3.81E-38 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 549 564 5.0E-23 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 520 533 5.0E-23 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 486 505 5.0E-23 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 413 427 5.0E-23 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Gene3D G3DSA:3.40.120.10 316 468 1.5E-49 T 31-10-2018 BRM88_02500 ee0122c01b4db43ab4368eec41c95e06 782 Gene3D G3DSA:3.30.310.50 685 782 1.2E-22 T 31-10-2018 BRM88_11275 7e059b6ccae09ae43fac0b339b01616b 99 Gene3D G3DSA:3.30.70.1060 1 98 6.9E-33 T 31-10-2018 BRM88_11275 7e059b6ccae09ae43fac0b339b01616b 99 Pfam PF03795 YCII-related domain 2 95 1.1E-22 T 31-10-2018 IPR005545 YCII-related BRM88_11275 7e059b6ccae09ae43fac0b339b01616b 99 SUPERFAMILY SSF54909 2 97 2.86E-28 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_04430 e894c914a0c92564abf0e49edfb2c061 64 Pfam PF01783 Ribosomal L32p protein family 2 55 1.3E-20 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_04430 e894c914a0c92564abf0e49edfb2c061 64 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.784 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_04430 e894c914a0c92564abf0e49edfb2c061 64 SUPERFAMILY SSF57829 2 54 4.46E-18 T 31-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BRM88_04430 e894c914a0c92564abf0e49edfb2c061 64 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.0E-19 T 31-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 Gene3D G3DSA:3.10.310.10 124 271 3.2E-89 T 31-10-2018 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 10 284 35.414 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 SUPERFAMILY SSF54506 149 282 3.61E-46 T 31-10-2018 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 73 87 - T 31-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 Pfam PF01678 Diaminopimelate epimerase 162 277 2.6E-25 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 Pfam PF01678 Diaminopimelate epimerase 12 130 4.3E-23 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 11 281 1.0E-76 T 31-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 SUPERFAMILY SSF54506 10 139 1.65E-38 T 31-10-2018 BRM88_21295 71d6d8d1a5c1f5baf8fbee2c3d767b3a 284 Gene3D G3DSA:3.10.310.10 12 280 3.2E-89 T 31-10-2018 BRM88_17800 f5d456c590525b1d4e1abf17592f2e14 439 Pfam PF13546 DDE superfamily endonuclease 18 291 5.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_17800 f5d456c590525b1d4e1abf17592f2e14 439 SUPERFAMILY SSF53098 15 403 9.86E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 14 586 7.0E-260 T 31-10-2018 IPR011918 ABC transporter, ATP-binding/permease protein BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 Gene3D G3DSA:3.40.50.300 340 588 1.8E-92 T 31-10-2018 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 SUPERFAMILY SSF90123 19 334 1.96E-72 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 Gene3D G3DSA:1.20.1560.10 14 334 7.9E-81 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 Pfam PF00664 ABC transporter transmembrane region 34 296 1.0E-47 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 SMART SM00382 375 561 3.1E-20 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 Pfam PF00005 ABC transporter 366 515 1.5E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_10615 d84cb0032801db9e1bc5da0b90360f28 589 SUPERFAMILY SSF52540 340 586 4.79E-88 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 Pfam PF00520 Ion transport protein 35 242 1.6E-30 T 31-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 SUPERFAMILY SSF81324 30 244 2.42E-52 T 31-10-2018 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 131 157 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 189 211 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 218 244 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 69 92 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 95 115 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 PRINTS PR00169 Potassium channel signature 27 55 1.5E-24 T 31-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BRM88_06200 a80d391de77ff4b4b7e480bfa27d2187 290 Gene3D G3DSA:1.10.287.70 33 247 4.9E-53 T 31-10-2018 BRM88_06390 dd5d8946a169142d9d9f0efd74139412 360 Gene3D G3DSA:1.10.287.70 1 101 1.3E-9 T 31-10-2018 BRM88_06390 dd5d8946a169142d9d9f0efd74139412 360 SUPERFAMILY SSF51735 121 231 7.09E-6 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06390 dd5d8946a169142d9d9f0efd74139412 360 Pfam PF07885 Ion channel 47 97 8.4E-8 T 31-10-2018 IPR013099 Potassium channel domain BRM88_06390 dd5d8946a169142d9d9f0efd74139412 360 SUPERFAMILY SSF81324 6 143 1.7E-10 T 31-10-2018 BRM88_06390 dd5d8946a169142d9d9f0efd74139412 360 Gene3D G3DSA:3.40.50.720 114 234 6.6E-9 T 31-10-2018 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50249 69 128 1.97E-15 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.40.50.140 130 188 1.8E-27 T 31-10-2018 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.5E-25 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50249 130 187 4.11E-18 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 5.8E-73 T 31-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 49.35 T 31-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.40.50.140 66 127 1.8E-28 T 31-10-2018 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 SMART SM01185 69 123 2.9E-19 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 PIRSF PIRSF005901 2 188 8.4E-63 T 31-10-2018 IPR020599 Translation elongation factor P/YeiP BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 1.1E-19 T 31-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 31-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 SMART SM00841 131 186 4.5E-32 T 31-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Gene3D G3DSA:2.30.30.30 1 65 1.4E-20 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 6 62 5.3E-21 T 31-10-2018 IPR013185 Translation elongation factor, KOW-like BRM88_14245 51b0f693f19b8d25851f1289665f4895 188 SUPERFAMILY SSF50104 5 65 4.33E-17 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_06405 e97f71c83cc1138fa42cae73f1830868 190 Pfam PF06693 Protein of unknown function (DUF1190) 28 180 1.4E-29 T 31-10-2018 IPR009576 Biofilm formation YgiB BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Pfam PF02954 Bacterial regulatory protein, Fis family 495 525 2.9E-8 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 SUPERFAMILY SSF159800 15 195 4.05E-47 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 428 437 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Gene3D G3DSA:3.40.50.2300 23 194 9.5E-63 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Gene3D G3DSA:3.40.50.300 206 390 1.6E-60 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Gene3D G3DSA:1.10.10.60 474 525 1.3E-9 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 SUPERFAMILY SSF46689 428 524 2.46E-7 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Pfam PF00158 Sigma-54 interaction domain 220 385 7.5E-61 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 243 256 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 493 510 5.4E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 510 530 5.4E-5 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Gene3D G3DSA:1.10.8.60 391 463 1.7E-15 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 13 526 3.6E-233 T 31-10-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005737|GO:0019629 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Pfam PF06506 Propionate catabolism activator 37 195 9.5E-45 T 31-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 SUPERFAMILY SSF52540 220 448 5.45E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 Gene3D G3DSA:3.40.50.10660 92 179 9.5E-63 T 31-10-2018 BRM88_04505 a6aeab74df2010703e3f7b72b8e15695 532 SMART SM00382 239 382 1.8E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 SUPERFAMILY SSF46548 7 158 7.85E-37 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Gene3D G3DSA:3.50.50.60 146 272 2.5E-29 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Gene3D G3DSA:3.50.50.60 410 477 1.2E-26 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Gene3D G3DSA:3.50.50.60 292 409 1.2E-26 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 PRINTS PR00419 Adrenodoxin reductase family signature 172 185 7.5E-29 T 31-10-2018 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 PRINTS PR00419 Adrenodoxin reductase family signature 333 346 7.5E-29 T 31-10-2018 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 PRINTS PR00419 Adrenodoxin reductase family signature 149 171 7.5E-29 T 31-10-2018 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 PRINTS PR00419 Adrenodoxin reductase family signature 299 313 7.5E-29 T 31-10-2018 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 SUPERFAMILY SSF51971 146 410 1.41E-66 T 31-10-2018 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 7 483 1.8E-242 T 31-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 149 470 2.7E-29 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Gene3D G3DSA:1.10.1060.10 28 145 4.8E-33 T 31-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BRM88_00850 8bf28de35423cfe59928b8746e1359b3 493 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 29 135 3.8E-36 T 31-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 Gene3D G3DSA:3.90.226.10 1 318 6.4E-120 T 31-10-2018 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 316 50.935 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 4.7E-49 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 315 2.3E-154 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 6.2E-63 T 31-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_10230 0499f0de724393967ef2eccc029e24d0 319 SUPERFAMILY SSF52096 5 316 1.91E-103 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_05765 6cf3604b6bf5f3825ff2b3c3ec87cbd2 99 Gene3D G3DSA:1.20.5.50 50 98 4.5E-5 T 31-10-2018 BRM88_05765 6cf3604b6bf5f3825ff2b3c3ec87cbd2 99 Gene3D G3DSA:1.10.20.30 1 48 9.9E-19 T 31-10-2018 BRM88_05765 6cf3604b6bf5f3825ff2b3c3ec87cbd2 99 SUPERFAMILY SSF102829 7 94 9.68E-24 T 31-10-2018 IPR036192 Cell division protein ZapA-like superfamily BRM88_05765 6cf3604b6bf5f3825ff2b3c3ec87cbd2 99 Pfam PF05164 Cell division protein ZapA 7 91 1.7E-20 T 31-10-2018 IPR007838 Cell division protein ZapA-like BRM88_23800 81bd4c987288a5051649a938fe63ccb5 175 Pfam PF07484 Phage Tail Collar Domain 7 63 8.5E-23 T 31-10-2018 IPR011083 Phage tail collar domain BRM88_23800 81bd4c987288a5051649a938fe63ccb5 175 SUPERFAMILY SSF88874 1 169 2.53E-49 T 31-10-2018 BRM88_23800 81bd4c987288a5051649a938fe63ccb5 175 Gene3D G3DSA:3.90.1340.10 2 59 6.1E-15 T 31-10-2018 IPR037053 Phage tail collar domain superfamily BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 SUPERFAMILY SSF51419 31 283 7.72E-62 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 186 199 2.1E-10 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 2.1E-10 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 2.1E-10 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 2.1E-10 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 SUPERFAMILY SSF50621 265 393 8.37E-38 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 28 372 1.7E-14 T 31-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 280 2.4E-27 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 Gene3D G3DSA:2.40.37.10 263 398 3.8E-42 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_06945 af5b0e37887074e89e1877652b39a0fa 398 Gene3D G3DSA:3.20.20.10 36 257 3.2E-41 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 SUPERFAMILY SSF52279 372 607 1.44E-51 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Pfam PF14310 Fibronectin type III-like domain 641 709 2.0E-19 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Gene3D G3DSA:3.20.20.300 2 354 1.9E-117 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 253 270 - T 31-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 SUPERFAMILY SSF51445 3 371 3.05E-100 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Gene3D G3DSA:3.40.50.1700 358 606 1.1E-77 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Gene3D G3DSA:2.60.40.10 607 720 4.6E-32 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 253 271 3.9E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 81 97 3.9E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 183 199 3.9E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 100 119 3.9E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 PRINTS PR00133 Glycosyl hydrolase family 3 signature 146 162 3.9E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 372 604 3.6E-52 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 SMART SM01217 641 710 1.6E-30 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_22000 dcb3fb7c3b448471c8cad4d5d0bef738 723 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 14 332 5.5E-70 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_02150 61391f19c8f016170622bddeff17f158 429 SUPERFAMILY SSF52374 4 332 1.15E-76 T 31-10-2018 BRM88_02150 61391f19c8f016170622bddeff17f158 429 Gene3D G3DSA:3.40.50.620 4 332 6.7E-110 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_02150 61391f19c8f016170622bddeff17f158 429 Pfam PF00579 tRNA synthetases class I (W and Y) 3 282 2.6E-55 T 31-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_02150 61391f19c8f016170622bddeff17f158 429 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 332 3.6E-86 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BRM88_02150 61391f19c8f016170622bddeff17f158 429 Pfam PF07411 Domain of unknown function (DUF1508) 361 402 1.6E-4 T 31-10-2018 IPR010879 Domain of unknown function DUF1508 BRM88_02150 61391f19c8f016170622bddeff17f158 429 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 333 36.291 T 31-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 BRM88_02150 61391f19c8f016170622bddeff17f158 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 1.1E-20 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BRM88_02150 61391f19c8f016170622bddeff17f158 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 202 212 1.1E-20 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BRM88_02150 61391f19c8f016170622bddeff17f158 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.1E-20 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BRM88_02150 61391f19c8f016170622bddeff17f158 429 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 1.1E-20 T 31-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BRM88_02150 61391f19c8f016170622bddeff17f158 429 SUPERFAMILY SSF160113 353 403 1.23E-10 T 31-10-2018 IPR036913 YegP-like superfamily BRM88_02150 61391f19c8f016170622bddeff17f158 429 Gene3D G3DSA:1.10.240.10 197 299 6.7E-110 T 31-10-2018 BRM88_20780 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20780 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_00155 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00155 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_11035 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_11035 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13880 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13880 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_18220 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_18220 061c217e4c03f9953ea6bf17a2478ab3 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 374 48.244 T 31-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 SUPERFAMILY SSF52317 153 372 8.25E-62 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 Pfam PF00117 Glutamine amidotransferase class-I 193 368 3.9E-45 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 Gene3D G3DSA:3.50.30.20 2 150 7.4E-59 T 31-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 371 3.4E-144 T 31-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 131 6.7E-53 T 31-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 Gene3D G3DSA:3.40.50.880 151 372 1.3E-72 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 277 294 5.6E-38 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 302 313 5.6E-38 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 260 276 5.6E-38 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 190 204 5.6E-38 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 229 243 5.6E-38 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 SMART SM01097 3 133 1.1E-88 T 31-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00096 Glutamine amidotransferase superfamily signature 345 358 3.0E-10 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00096 Glutamine amidotransferase superfamily signature 232 241 3.0E-10 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 PRINTS PR00096 Glutamine amidotransferase superfamily signature 260 271 3.0E-10 T 31-10-2018 BRM88_15395 716d983469a0af01995b4f743a9ebb16 374 SUPERFAMILY SSF52021 4 149 9.02E-57 T 31-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 SUPERFAMILY SSF69279 25 199 4.48E-53 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 Pfam PF05954 Phage late control gene D protein (GPD) 43 350 7.0E-84 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 Gene3D G3DSA:3.30.1920.30 237 302 5.4E-93 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 Gene3D G3DSA:2.30.110.50 27 349 5.4E-93 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 SUPERFAMILY SSF69255 386 472 4.18E-32 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 536 1.7E-176 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 SUPERFAMILY SSF69279 211 383 3.06E-20 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 519 3.5E-123 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 Gene3D G3DSA:3.55.50.10 110 203 5.4E-93 T 31-10-2018 BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 Gene3D G3DSA:2.40.50.230 375 477 2.2E-43 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_08460 c000d6b9a1c9570888e2a1539251f116 748 SUPERFAMILY SSF69349 462 743 4.32E-37 T 31-10-2018 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 Gene3D G3DSA:2.40.500.20 116 233 7.4E-48 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 122 227 3.2E-40 T 31-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 SUPERFAMILY SSF46609 28 115 4.06E-33 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 194 201 - T 31-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 Gene3D G3DSA:1.10.287.990 48 114 1.4E-26 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 31 114 3.7E-29 T 31-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PIRSF PIRSF000349 3 235 8.8E-82 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PRINTS PR01703 Manganese superoxide dismutase signature 97 110 5.8E-25 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PRINTS PR01703 Manganese superoxide dismutase signature 151 159 5.8E-25 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PRINTS PR01703 Manganese superoxide dismutase signature 34 45 5.8E-25 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PRINTS PR01703 Manganese superoxide dismutase signature 55 68 5.8E-25 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 PRINTS PR01703 Manganese superoxide dismutase signature 192 204 5.8E-25 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_15055 b09becb3c8ce20d8460bfbfca9733914 235 SUPERFAMILY SSF54719 118 232 1.14E-43 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_01165 707b714a858abe53b02bac714b94761f 532 PIRSF PIRSF006281 1 526 1.2E-208 T 31-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD BRM88_01165 707b714a858abe53b02bac714b94761f 532 SUPERFAMILY SSF81296 414 524 5.32E-28 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_01165 707b714a858abe53b02bac714b94761f 532 Gene3D G3DSA:2.60.40.10 416 531 1.5E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_01165 707b714a858abe53b02bac714b94761f 532 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 43 522 1.7E-195 T 31-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 BRM88_01165 707b714a858abe53b02bac714b94761f 532 SUPERFAMILY SSF74650 43 412 5.65E-156 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_01165 707b714a858abe53b02bac714b94761f 532 Gene3D G3DSA:2.70.98.10 42 413 1.0E-153 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BRM88_01165 707b714a858abe53b02bac714b94761f 532 Hamap MF_01068 Glucans biosynthesis protein D [mdoD]. 1 532 62.383 T 31-10-2018 IPR023724 Glucan biosynthesis, MdoD BRM88_10185 92eeff84d01fc95612f5daf12e9b992c 200 Gene3D G3DSA:3.40.50.150 3 182 4.3E-12 T 31-10-2018 BRM88_10185 92eeff84d01fc95612f5daf12e9b992c 200 SUPERFAMILY SSF53335 9 179 1.72E-14 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 297 433 4.4E-47 T 31-10-2018 IPR017733 Type VI secretion system peptidoglycan-associated domain BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 57 266 1.3E-69 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 Pfam PF00691 OmpA family 329 418 4.5E-13 T 31-10-2018 IPR006665 OmpA-like domain BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 Gene3D G3DSA:1.25.40.590 55 212 2.8E-52 T 31-10-2018 IPR038522 Type IV / VI secretion system, DotU superfamily BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 Gene3D G3DSA:3.30.1330.60 286 438 6.8E-35 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 Pfam PF09850 Type VI secretion system protein DotU 60 260 2.3E-64 T 31-10-2018 IPR017732 Type IV / VI secretion system, DotU BRM88_16240 1ea47a60fcdd46b1ff82949df5c60568 438 SUPERFAMILY SSF103088 321 436 4.97E-25 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 32 572 8.1E-74 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 682 825 7.0E-39 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 31 566 3.6E-95 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Gene3D G3DSA:2.40.50.230 415 522 2.4E-31 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Gene3D G3DSA:3.55.50.10 107 210 1.8E-68 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 SUPERFAMILY SSF69255 422 515 2.88E-22 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 SUPERFAMILY SSF69279 219 360 2.64E-8 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Gene3D G3DSA:2.30.110.50 29 356 1.8E-68 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 545 652 1.4E-35 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Pfam PF05954 Phage late control gene D protein (GPD) 41 360 2.1E-71 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 Gene3D G3DSA:3.30.1920.30 243 312 1.8E-68 T 31-10-2018 BRM88_05275 f51e84be87302cb18da32b9cdecd3c2f 907 SUPERFAMILY SSF69279 27 206 1.62E-47 T 31-10-2018 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 SUPERFAMILY SSF88659 93 159 2.75E-11 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 PRINTS PR00046 Major sigma-70 factor signature 222 233 2.3E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 PRINTS PR00046 Major sigma-70 factor signature 190 202 2.3E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 PRINTS PR00046 Major sigma-70 factor signature 207 222 2.3E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 PRINTS PR00046 Major sigma-70 factor signature 47 60 2.3E-11 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 6 240 64.602 T 31-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 SUPERFAMILY SSF88946 17 92 4.19E-24 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Gene3D G3DSA:1.10.1740.10 5 89 9.6E-30 T 31-10-2018 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Pfam PF04542 Sigma-70 region 2 21 92 2.9E-17 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Gene3D G3DSA:1.20.140.160 91 239 2.7E-44 T 31-10-2018 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Pfam PF04545 Sigma-70, region 4 186 234 1.3E-17 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 PIRSF PIRSF000770 1 242 3.5E-40 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 Pfam PF04539 Sigma-70 region 3 103 173 8.2E-13 T 31-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 21 238 8.1E-81 T 31-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 207 233 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 236 1.1E-33 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_13795 5dbbc1a9cf8628a8d1272a6e371e19eb 251 SUPERFAMILY SSF88659 166 237 1.03E-19 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_22385 5a325124663f823e42ff23f7915c827a 156 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 20 153 4.5E-36 T 31-10-2018 IPR012660 Thioesterase, putative BRM88_22385 5a325124663f823e42ff23f7915c827a 156 SUPERFAMILY SSF54637 12 153 6.04E-29 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_22385 5a325124663f823e42ff23f7915c827a 156 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 18 154 1.8E-49 T 31-10-2018 IPR012660 Thioesterase, putative BRM88_22385 5a325124663f823e42ff23f7915c827a 156 Gene3D G3DSA:3.10.129.10 8 153 3.3E-39 T 31-10-2018 BRM88_02455 0816e1910a3ce7d53b9bbb2635ad8ee6 286 SMART SM00090 2 235 4.6E-9 T 31-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 BRM88_02455 0816e1910a3ce7d53b9bbb2635ad8ee6 286 SUPERFAMILY SSF56112 19 196 2.04E-17 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_02455 0816e1910a3ce7d53b9bbb2635ad8ee6 286 Gene3D G3DSA:1.10.510.10 138 221 2.5E-17 T 31-10-2018 BRM88_02455 0816e1910a3ce7d53b9bbb2635ad8ee6 286 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 31-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 BRM88_02455 0816e1910a3ce7d53b9bbb2635ad8ee6 286 Pfam PF01163 RIO1 family 31 219 2.1E-34 T 31-10-2018 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Pfam PF00994 Probable molybdopterin binding domain 183 318 2.0E-27 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Gene3D G3DSA:3.40.980.10 178 329 7.3E-128 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 SUPERFAMILY SSF63882 4 179 1.31E-48 T 31-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 SUPERFAMILY SSF53218 180 324 1.44E-41 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Pfam PF03454 MoeA C-terminal region (domain IV) 333 403 1.8E-16 T 31-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 310 2.9E-31 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 170 1.5E-40 T 31-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 SUPERFAMILY SSF63867 328 404 4.84E-19 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Gene3D G3DSA:2.170.190.11 52 144 7.3E-128 T 31-10-2018 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Gene3D G3DSA:3.90.105.10 29 177 7.3E-128 T 31-10-2018 BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 SMART SM00852 183 320 2.1E-39 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_13315 64860db3e54b6a51620f8d0ae464ad38 406 Gene3D G3DSA:2.40.340.10 330 399 7.3E-128 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_07340 29aa0e401dede060b92aeeeb8e117d8d 144 Pfam PF02566 OsmC-like protein 42 138 7.7E-22 T 31-10-2018 IPR003718 OsmC/Ohr family BRM88_07340 29aa0e401dede060b92aeeeb8e117d8d 144 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 139 3.8E-58 T 31-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 BRM88_07340 29aa0e401dede060b92aeeeb8e117d8d 144 Gene3D G3DSA:3.30.300.20 1 141 2.8E-43 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_07340 29aa0e401dede060b92aeeeb8e117d8d 144 SUPERFAMILY SSF82784 2 140 2.36E-37 T 31-10-2018 IPR036102 OsmC/Ohr superfamily BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 SUPERFAMILY SSF54826 3 138 9.93E-38 T 31-10-2018 BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 SUPERFAMILY SSF51604 184 431 1.14E-71 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 Pfam PF13378 Enolase C-terminal domain-like 202 415 1.6E-61 T 31-10-2018 IPR029065 Enolase C-terminal domain-like BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 Gene3D G3DSA:3.30.390.10 1 131 5.2E-54 T 31-10-2018 IPR029017 Enolase-like, N-terminal BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 136 8.8E-7 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 SMART SM00922 199 295 2.6E-27 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BRM88_24075 135baf57e3e1058fe29418f99ea2de47 439 Gene3D G3DSA:3.20.20.120 132 436 9.8E-111 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 Gene3D G3DSA:3.30.390.10 22 416 2.5E-164 T 31-10-2018 IPR029017 Enolase-like, N-terminal BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 30 127 2.3E-31 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 SUPERFAMILY SSF54826 26 129 5.38E-31 T 31-10-2018 BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 SUPERFAMILY SSF51604 115 401 8.12E-71 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 SMART SM00922 145 274 5.9E-13 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 102 127 - T 31-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 Gene3D G3DSA:3.20.20.120 122 384 2.5E-164 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_23500 6aeae6a8091ee236ef1b488cdda0c5ba 419 Pfam PF13378 Enolase C-terminal domain-like 211 393 4.1E-38 T 31-10-2018 IPR029065 Enolase C-terminal domain-like BRM88_17000 5cecc05261a088d365a88bb98d75d2c9 213 Gene3D G3DSA:3.10.560.10 84 189 8.2E-15 T 31-10-2018 BRM88_17000 5cecc05261a088d365a88bb98d75d2c9 213 Pfam PF10531 SLBB domain 108 161 2.9E-8 T 31-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17000 5cecc05261a088d365a88bb98d75d2c9 213 Pfam PF02563 Polysaccharide biosynthesis/export protein 26 101 2.0E-19 T 31-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 BRM88_03765 0cad1bdee475781211975280b579a505 615 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 20 614 3.0E-299 T 31-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 BRM88_03765 0cad1bdee475781211975280b579a505 615 SUPERFAMILY SSF49503 184 389 2.09E-53 T 31-10-2018 IPR008972 Cupredoxin BRM88_03765 0cad1bdee475781211975280b579a505 615 Gene3D G3DSA:2.60.40.420 494 614 1.2E-32 T 31-10-2018 IPR008972 Cupredoxin BRM88_03765 0cad1bdee475781211975280b579a505 615 SUPERFAMILY SSF49503 464 613 1.47E-36 T 31-10-2018 IPR008972 Cupredoxin BRM88_03765 0cad1bdee475781211975280b579a505 615 Gene3D G3DSA:2.60.40.420 185 391 4.9E-39 T 31-10-2018 IPR008972 Cupredoxin BRM88_03765 0cad1bdee475781211975280b579a505 615 Pfam PF07731 Multicopper oxidase 501 614 6.9E-26 T 31-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 BRM88_03765 0cad1bdee475781211975280b579a505 615 Gene3D G3DSA:2.60.40.420 47 179 9.9E-38 T 31-10-2018 IPR008972 Cupredoxin BRM88_03765 0cad1bdee475781211975280b579a505 615 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 23 50 0.0011 T 31-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BRM88_03765 0cad1bdee475781211975280b579a505 615 Pfam PF07732 Multicopper oxidase 70 179 3.9E-39 T 31-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 BRM88_03765 0cad1bdee475781211975280b579a505 615 ProSitePatterns PS00080 Multicopper oxidases signature 2. 596 607 - T 31-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 BRM88_03765 0cad1bdee475781211975280b579a505 615 Pfam PF00394 Multicopper oxidase 190 367 4.0E-31 T 31-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 BRM88_03765 0cad1bdee475781211975280b579a505 615 ProSitePatterns PS00079 Multicopper oxidases signature 1. 591 611 - T 31-10-2018 IPR033138 Multicopper oxidases, conserved site BRM88_03765 0cad1bdee475781211975280b579a505 615 ProSitePatterns PS00079 Multicopper oxidases signature 1. 155 175 - T 31-10-2018 IPR033138 Multicopper oxidases, conserved site BRM88_03765 0cad1bdee475781211975280b579a505 615 SUPERFAMILY SSF49503 73 211 2.47E-39 T 31-10-2018 IPR008972 Cupredoxin BRM88_11235 8f748705add68b6c12231746bb8cee76 382 Pfam PF00155 Aminotransferase class I and II 28 379 5.0E-58 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_11235 8f748705add68b6c12231746bb8cee76 382 SUPERFAMILY SSF53383 2 381 1.86E-99 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_11235 8f748705add68b6c12231746bb8cee76 382 Gene3D G3DSA:3.90.1150.10 16 379 1.5E-131 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_11235 8f748705add68b6c12231746bb8cee76 382 Gene3D G3DSA:3.40.640.10 40 279 1.5E-131 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 5.6E-17 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 5.6E-17 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 5.6E-17 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 5.6E-17 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.642 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 SUPERFAMILY SSF46911 3 74 8.37E-28 T 31-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.7E-35 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 Gene3D G3DSA:4.10.640.10 20 75 7.7E-26 T 31-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 Pfam PF01084 Ribosomal protein S18 19 68 1.6E-23 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 31-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12795 1d524e9dd4238bc37cf5ce82877566aa 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 4.0E-23 T 31-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_11625 566dc248be5aedc4b6465f0255445fb1 318 SUPERFAMILY SSF53098 163 307 4.17E-22 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_11625 566dc248be5aedc4b6465f0255445fb1 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_11625 566dc248be5aedc4b6465f0255445fb1 318 Pfam PF00665 Integrase core domain 173 266 4.7E-8 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_11625 566dc248be5aedc4b6465f0255445fb1 318 Gene3D G3DSA:3.30.420.10 156 315 1.7E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 144 5.0E-36 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 SUPERFAMILY SSF52788 1 151 4.19E-48 T 31-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 Gene3D G3DSA:3.40.50.2300 1 154 5.6E-52 T 31-10-2018 BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 SMART SM00226 1 150 8.6E-47 T 31-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 122 137 8.9E-24 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 80 95 8.9E-24 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 8.9E-24 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BRM88_12120 b28ea17b9c94866b1b532948b8a49d6d 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 8.9E-24 T 31-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Pfam PF00072 Response regulator receiver domain 1064 1172 1.1E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:2.130.10.10 26 328 2.2E-40 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF47384 798 876 1.86E-17 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF55874 864 1040 2.88E-45 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:2.130.10.10 353 639 9.1E-24 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF52172 1060 1176 1.99E-29 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1022 1035 1.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 PRINTS PR00344 Bacterial sensor protein C-terminal signature 998 1016 1.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 PRINTS PR00344 Bacterial sensor protein C-terminal signature 980 990 1.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 PRINTS PR00344 Bacterial sensor protein C-terminal signature 962 976 1.7E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF63829 175 382 3.05E-7 T 31-10-2018 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:1.10.287.130 780 873 6.9E-23 T 31-10-2018 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:2.60.40.10 654 764 1.5E-14 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Pfam PF00512 His Kinase A (phospho-acceptor) domain 810 875 1.5E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 922 1036 4.9E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Pfam PF07494 Two component regulator propeller 35 57 0.0059 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:3.40.50.2300 1051 1182 1.1E-28 T 31-10-2018 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF63829 37 232 2.91E-11 T 31-10-2018 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Gene3D G3DSA:3.30.565.10 874 1040 7.0E-49 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SMART SM00388 810 875 8.0E-21 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SMART SM00448 1061 1172 6.5E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SMART SM00387 922 1038 7.6E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 SUPERFAMILY SSF63829 404 608 1.77E-13 T 31-10-2018 BRM88_09550 702b23048f4e6a736faba7b415c2d3b3 1191 Pfam PF07495 Y_Y_Y domain 693 755 4.7E-10 T 31-10-2018 IPR011123 Two component regulator three Y BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 SUPERFAMILY SSF143243 8 219 8.63E-54 T 31-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 132 187 5.0E-27 T 31-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 33 199 2.7E-41 T 31-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 Gene3D G3DSA:3.30.460.80 1 77 3.2E-7 T 31-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 Gene3D G3DSA:3.30.460.80 97 179 2.2E-29 T 31-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 160 181 - T 31-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17275 75af5d3dad16e71ce4a1504ecd624550 250 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 8 207 33.385 T 31-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 Pfam PF02803 Thiolase, C-terminal domain 278 401 2.2E-41 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 SUPERFAMILY SSF53901 3 277 3.67E-76 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 Gene3D G3DSA:3.40.47.10 141 398 3.2E-149 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 Pfam PF00108 Thiolase, N-terminal domain 4 269 6.2E-77 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 SUPERFAMILY SSF53901 278 401 8.51E-42 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 Gene3D G3DSA:3.40.47.10 7 283 3.2E-149 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 PIRSF PIRSF000429 1 402 2.4E-127 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 402 3.7E-214 T 31-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 400 1.1E-134 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_02410 b853b9f2e81899354f56b4bdc956881a 402 ProSitePatterns PS00099 Thiolases active site. 383 396 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 BRM88_13715 9c783258ca8cc9bb0d09e0c13fb9328b 424 Pfam PF02120 Flagellar hook-length control protein FliK 305 384 1.3E-23 T 31-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal BRM88_13715 9c783258ca8cc9bb0d09e0c13fb9328b 424 PRINTS PR01007 Flagellar hook-length control protein signature 190 213 1.0E-6 T 31-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 BRM88_13715 9c783258ca8cc9bb0d09e0c13fb9328b 424 PRINTS PR01007 Flagellar hook-length control protein signature 352 375 1.0E-6 T 31-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 BRM88_13715 9c783258ca8cc9bb0d09e0c13fb9328b 424 Gene3D G3DSA:3.30.750.140 284 395 7.9E-32 T 31-10-2018 IPR038610 FliK-like, C-terminal domain superfamily BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 SUPERFAMILY SSF54211 217 380 3.79E-42 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Pfam PF00204 DNA gyrase B 218 383 4.6E-36 T 31-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 SMART SM00433 34 623 3.8E-198 T 31-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Gene3D G3DSA:3.30.230.10 218 388 6.7E-55 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 627 46.069 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 SMART SM00387 27 173 1.1E-19 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 SUPERFAMILY SSF55874 4 215 4.71E-65 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 SUPERFAMILY SSF56719 387 620 8.89E-74 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Pfam PF01751 Toprim domain 412 509 1.1E-11 T 31-10-2018 IPR006171 TOPRIM domain BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 ProSitePatterns PS00177 DNA topoisomerase II signature. 415 423 - T 31-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 170 5.7E-16 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 619 6.6E-23 T 31-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 66 79 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 413 427 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 516 528 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 109 123 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 496 513 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 31 46 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 265 278 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 478 494 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR00418 DNA topoisomerase II family signature 561 577 2.7E-57 T 31-10-2018 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 624 2.3E-287 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Gene3D G3DSA:3.40.50.670 389 622 6.3E-86 T 31-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 337 360 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 361 386 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 502 518 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 447 468 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 536 558 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 468 480 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 310 325 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 293 309 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 583 597 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 1.4E-97 T 31-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_15825 8cbb55fb00cd350ff369cb865514eab3 629 Gene3D G3DSA:3.30.565.10 3 215 4.8E-75 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 5 485 33.679 T 31-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Gene3D G3DSA:3.40.1190.10 100 335 9.8E-80 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 SUPERFAMILY SSF63418 9 100 2.88E-19 T 31-10-2018 IPR035911 MurE/MurF, N-terminal BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 333 417 1.8E-19 T 31-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 SUPERFAMILY SSF53244 332 487 3.92E-46 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Pfam PF08245 Mur ligase middle domain 109 311 3.7E-48 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Gene3D G3DSA:3.90.190.20 342 489 9.6E-54 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Pfam PF01225 Mur ligase family, catalytic domain 22 96 3.0E-10 T 31-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 20 485 3.1E-151 T 31-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 SUPERFAMILY SSF53623 100 331 3.27E-74 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_20425 091d1eb05e98c817e51406c30a49caf3 495 Gene3D G3DSA:3.40.1390.10 3 99 3.8E-19 T 31-10-2018 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 SUPERFAMILY SSF47384 225 302 6.87E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 SMART SM00387 352 460 1.3E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 SUPERFAMILY SSF55874 296 457 2.88E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 457 8.1E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 SMART SM00388 242 307 1.4E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 1.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 1.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 457 1.7E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 Gene3D G3DSA:3.30.565.10 310 458 5.6E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 302 1.7E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 Gene3D G3DSA:1.10.287.130 189 300 1.8E-14 T 31-10-2018 BRM88_05625 8644a2a111637b3ac481caf91e2be8cb 461 Pfam PF08521 Two-component sensor kinase N-terminal 25 165 4.1E-37 T 31-10-2018 IPR013727 Two-component sensor kinase, N-terminal BRM88_20190 7775efc660e01a10d07310b275f62696 332 Pfam PF01207 Dihydrouridine synthase (Dus) 13 316 1.8E-104 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_20190 7775efc660e01a10d07310b275f62696 332 Gene3D G3DSA:1.10.1200.80 254 323 1.0E-8 T 31-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 BRM88_20190 7775efc660e01a10d07310b275f62696 332 Gene3D G3DSA:3.20.20.70 7 248 7.9E-78 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_20190 7775efc660e01a10d07310b275f62696 332 SUPERFAMILY SSF51395 10 318 1.39E-90 T 31-10-2018 BRM88_20190 7775efc660e01a10d07310b275f62696 332 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 318 3.8E-120 T 31-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 BRM88_20190 7775efc660e01a10d07310b275f62696 332 PIRSF PIRSF006621 1 325 5.3E-109 T 31-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_20190 7775efc660e01a10d07310b275f62696 332 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.902 T 31-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 BRM88_20190 7775efc660e01a10d07310b275f62696 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 31-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Gene3D G3DSA:3.40.50.970 162 529 5.3E-145 T 31-10-2018 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 11 49 1.2E-15 T 31-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 SMART SM00861 594 787 3.0E-53 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Gene3D G3DSA:3.40.50.12470 557 803 2.5E-164 T 31-10-2018 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 SUPERFAMILY SSF52518 118 548 1.02E-85 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 SUPERFAMILY SSF52518 577 794 9.25E-53 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 1.2E-51 T 31-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Pfam PF02779 Transketolase, pyrimidine binding domain 595 788 8.4E-63 T 31-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Pfam PF00676 Dehydrogenase E1 component 209 516 3.3E-52 T 31-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 31-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Gene3D G3DSA:3.40.50.11610 724 929 2.5E-164 T 31-10-2018 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 PIRSF PIRSF000157 2 934 0.0 T 31-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BRM88_10640 e1e565929c05026c51ab4731df81b61d 942 Gene3D G3DSA:1.10.287.1150 79 161 8.8E-20 T 31-10-2018 BRM88_21525 b4a05f2cdf19b29201359216282f3e7c 292 Gene3D G3DSA:3.40.50.150 130 290 3.4E-14 T 31-10-2018 BRM88_21525 b4a05f2cdf19b29201359216282f3e7c 292 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 189 252 1.5E-4 T 31-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 BRM88_21525 b4a05f2cdf19b29201359216282f3e7c 292 SUPERFAMILY SSF53335 79 278 7.63E-25 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_17875 416530a838bedc3386ef030435f74128 130 SUPERFAMILY SSF81273 80 108 3.45E-6 T 31-10-2018 BRM88_17875 416530a838bedc3386ef030435f74128 130 Gene3D G3DSA:3.30.160.510 60 121 6.5E-26 T 31-10-2018 BRM88_17875 416530a838bedc3386ef030435f74128 130 Pfam PF00816 H-NS histone family 16 108 1.0E-17 T 31-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BRM88_17875 416530a838bedc3386ef030435f74128 130 SMART SM00528 75 118 5.0E-8 T 31-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BRM88_16490 f6a71ba5a7a36550ae9b08c328193ab5 256 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 136 209 1.4E-9 T 31-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_16490 f6a71ba5a7a36550ae9b08c328193ab5 256 PRINTS PR01399 Enterobactin synthetase component D signature 68 88 8.6E-9 T 31-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 BRM88_16490 f6a71ba5a7a36550ae9b08c328193ab5 256 PRINTS PR01399 Enterobactin synthetase component D signature 183 199 8.6E-9 T 31-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 BRM88_16490 f6a71ba5a7a36550ae9b08c328193ab5 256 SUPERFAMILY SSF56214 134 226 2.96E-12 T 31-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_16490 f6a71ba5a7a36550ae9b08c328193ab5 256 Gene3D G3DSA:3.90.470.20 62 154 3.9E-7 T 31-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 Pfam PF13487 HD domain 229 291 8.9E-15 T 31-10-2018 BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 Gene3D G3DSA:1.10.3210.10 27 340 2.5E-63 T 31-10-2018 BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 Pfam PF11871 Domain of unknown function (DUF3391) 3 147 3.1E-29 T 31-10-2018 IPR021812 Protein of unknown function DUF3391 BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 TIGRFAM TIGR00277 HDIG: HDIG domain 178 268 3.5E-10 T 31-10-2018 IPR006675 HDIG domain BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 SMART SM00471 174 310 1.8E-11 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_22520 bfcad1dbf375e224025e7107b44d0b5a 419 SUPERFAMILY SSF109604 172 338 1.08E-29 T 31-10-2018 BRM88_15590 44498e80384b7c1e4581e5e8bef74a9d 139 SUPERFAMILY SSF53474 12 123 4.48E-6 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_15590 44498e80384b7c1e4581e5e8bef74a9d 139 Gene3D G3DSA:3.40.50.1820 5 128 5.1E-7 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 7 338 38.186 T 31-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 SUPERFAMILY SSF55347 133 325 8.33E-75 T 31-10-2018 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 Gene3D G3DSA:3.30.360.10 132 321 1.2E-146 T 31-10-2018 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 9 338 2.6E-136 T 31-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 SUPERFAMILY SSF51735 8 161 1.58E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 Gene3D G3DSA:3.40.50.720 10 336 1.2E-146 T 31-10-2018 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 SMART SM00859 9 124 1.1E-46 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 143 324 3.6E-60 T 31-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 9 123 1.0E-32 T 31-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BRM88_17405 69418c295d59c2cd6200d612f256a80c 341 PIRSF PIRSF000148 7 341 3.3E-134 T 31-10-2018 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 Gene3D G3DSA:3.30.70.120 1 112 5.0E-42 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 SUPERFAMILY SSF54913 1 112 1.18E-42 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 SMART SM00938 4 105 1.7E-58 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 PRINTS PR00340 P-II protein signature 83 103 2.8E-40 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 PRINTS PR00340 P-II protein signature 23 41 2.8E-40 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 PRINTS PR00340 P-II protein signature 52 75 2.8E-40 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 PRINTS PR00340 P-II protein signature 2 17 2.8E-40 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.9E-39 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 31-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BRM88_01005 01b82dc57e3e6ce461044b1c99c7d0a5 112 PIRSF PIRSF039144 1 112 3.0E-49 T 31-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BRM88_00900 2652de11f179421cec8725162a953036 355 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 34 44 1.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_00900 2652de11f179421cec8725162a953036 355 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 24 34 1.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_00900 2652de11f179421cec8725162a953036 355 SUPERFAMILY SSF53822 83 353 2.36E-60 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_00900 2652de11f179421cec8725162a953036 355 SUPERFAMILY SSF47413 22 80 2.63E-16 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_00900 2652de11f179421cec8725162a953036 355 Gene3D G3DSA:3.40.50.2300 183 312 1.2E-62 T 31-10-2018 BRM88_00900 2652de11f179421cec8725162a953036 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 24 69 2.3E-18 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_00900 2652de11f179421cec8725162a953036 355 Gene3D G3DSA:3.40.50.2300 77 328 1.2E-62 T 31-10-2018 BRM88_00900 2652de11f179421cec8725162a953036 355 Gene3D G3DSA:1.10.260.40 18 76 2.4E-20 T 31-10-2018 BRM88_00900 2652de11f179421cec8725162a953036 355 Pfam PF13377 Periplasmic binding protein-like domain 191 350 2.2E-35 T 31-10-2018 BRM88_00900 2652de11f179421cec8725162a953036 355 ProSitePatterns PS00356 LacI-type HTH domain signature. 25 43 - T 31-10-2018 BRM88_00900 2652de11f179421cec8725162a953036 355 SMART SM00354 22 92 1.1E-23 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_15015 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_15015 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_17835 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_17835 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13850 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13850 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_14950 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_14950 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00570 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_00570 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_24005 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF01609 Transposase DDE domain 135 310 7.8E-33 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_24005 c709cf8b7c5cd678b1125f046b8167cc 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF101967 497 631 5.62E-18 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 242 324 3.7E-8 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 484 611 3.7E-16 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 182 241 1.4E-9 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 457 494 2.8E-8 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 607 646 0.005 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 851 887 1.7E-5 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 54 181 4.5E-8 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 709 879 2.3E-31 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:3.30.1300.30 881 988 9.5E-16 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF101967 295 479 1.57E-25 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF101967 91 211 4.71E-11 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05658 Head domain of trimeric autotransporter adhesin 763 789 1.2E-4 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05658 Head domain of trimeric autotransporter adhesin 296 322 1.3E-5 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05658 Head domain of trimeric autotransporter adhesin 241 265 2.0E-4 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF05658 Head domain of trimeric autotransporter adhesin 559 584 1.5E-4 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:2.150.10.10 330 480 1.9E-26 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF101967 187 322 4.58E-15 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF54523 862 987 2.51E-10 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Pfam PF03895 YadA-like membrane anchor domain 936 986 1.2E-5 T 31-10-2018 IPR005594 YadA-like, C-terminal BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 Gene3D G3DSA:1.20.5.170 616 698 1.1E-14 T 31-10-2018 BRM88_03395 f0b006fe55d42eeb9f4bf9bdfc20cfdd 989 SUPERFAMILY SSF101967 736 871 3.27E-26 T 31-10-2018 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 241 258 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 201 225 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 176 200 6.9E-42 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 325 38.561 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 SUPERFAMILY SSF51735 5 183 1.08E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 162 8.3E-50 T 31-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 183 321 2.5E-46 T 31-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 PIRSF PIRSF000114 1 335 5.9E-98 T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 Gene3D G3DSA:3.40.50.720 1 190 1.9E-57 T 31-10-2018 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 Gene3D G3DSA:1.10.1040.10 192 340 3.9E-46 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 SUPERFAMILY SSF48179 182 335 2.38E-50 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_22405 d4c1907e1ce0428645e25ff618ad2f4a 341 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 191 212 - T 31-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BRM88_02565 533f98b6805babd60f0707cac18fc18e 377 Gene3D G3DSA:3.30.420.40 17 372 2.0E-125 T 31-10-2018 BRM88_02565 533f98b6805babd60f0707cac18fc18e 377 SUPERFAMILY SSF53067 11 350 1.15E-25 T 31-10-2018 BRM88_02565 533f98b6805babd60f0707cac18fc18e 377 Gene3D G3DSA:3.30.420.40 155 337 2.0E-125 T 31-10-2018 BRM88_02565 533f98b6805babd60f0707cac18fc18e 377 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 10 377 41.942 T 31-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BRM88_02565 533f98b6805babd60f0707cac18fc18e 377 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 11 377 1.8E-151 T 31-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 Gene3D G3DSA:3.30.499.20 5 292 6.4E-96 T 31-10-2018 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 SUPERFAMILY SSF53732 3 474 7.72E-162 T 31-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 349 360 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 114 122 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 215 228 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 139 154 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 88 101 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 125 138 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 201 214 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 292 306 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 PRINTS PR00415 Aconitase family signature 406 419 1.6E-47 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 2.2E-233 T 31-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.3E-157 T 31-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 473 61.415 T 31-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 Gene3D G3DSA:3.30.499.10 333 480 3.0E-48 T 31-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BRM88_04740 24dd955e0a6bea9924b538fa72480187 482 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 31-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BRM88_01080 1dc783fcd1b52eac15ce82c8b95e2b90 733 Pfam PF11678 Protein of unknown function (DUF3274) 418 708 8.8E-69 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 BRM88_01080 1dc783fcd1b52eac15ce82c8b95e2b90 733 Gene3D G3DSA:3.40.50.1820 176 359 1.3E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01080 1dc783fcd1b52eac15ce82c8b95e2b90 733 SUPERFAMILY SSF53474 215 300 2.98E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09210 1171f88cf227068362ad2e07d8abdae0 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_09210 1171f88cf227068362ad2e07d8abdae0 411 Pfam PF01610 Transposase 155 389 6.8E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_08690 1171f88cf227068362ad2e07d8abdae0 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_08690 1171f88cf227068362ad2e07d8abdae0 411 Pfam PF01610 Transposase 155 389 6.8E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 247 7.5E-46 T 31-10-2018 BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 2.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 2.6E-22 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 SUPERFAMILY SSF51735 12 249 6.2E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 195 0.0068 T 31-10-2018 BRM88_13650 35eb2d45b1a0f2c7a30a25aae3c5c5ab 250 Gene3D G3DSA:3.40.50.720 1 249 4.4E-64 T 31-10-2018 BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 0.0057 T 31-10-2018 BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 Gene3D G3DSA:3.40.50.720 7 258 2.7E-54 T 31-10-2018 BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 SUPERFAMILY SSF51735 7 257 4.2E-54 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.9E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.9E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.9E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.9E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.9E-21 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.8E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.8E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.8E-8 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 PIRSF PIRSF000126 1 264 3.1E-53 T 31-10-2018 BRM88_17305 88580eed8752d223a30097cd376bbfbd 266 Pfam PF00106 short chain dehydrogenase 8 188 2.6E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11830 8f5bde7728449f496f55f848883bfc6d 357 Pfam PF02486 Replication initiation factor 150 292 2.8E-22 T 31-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Gene3D G3DSA:3.40.120.10 3 154 1.3E-47 T 31-10-2018 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 446 4.3E-190 T 31-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 SUPERFAMILY SSF53738 3 167 7.85E-47 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Gene3D G3DSA:3.40.120.10 259 341 1.3E-59 T 31-10-2018 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 2.8E-11 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 2.8E-11 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 2.8E-11 T 31-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Gene3D G3DSA:3.40.120.10 177 363 1.3E-59 T 31-10-2018 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 SUPERFAMILY SSF53738 158 258 3.45E-27 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 448 44.632 T 31-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 443 1.2E-11 T 31-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 367 1.5E-28 T 31-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 SUPERFAMILY SSF55957 361 448 2.49E-16 T 31-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 98 107 - T 31-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 136 1.1E-42 T 31-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 159 256 1.7E-17 T 31-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 SUPERFAMILY SSF53738 260 366 1.1E-27 T 31-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BRM88_17350 828b47b7517c0290d73b6b06dff6dcc5 449 Gene3D G3DSA:3.30.310.50 372 449 6.0E-18 T 31-10-2018 BRM88_11385 57d744d79052c2f528daf982b0482e6c 322 Pfam PF00953 Glycosyl transferase family 4 77 210 1.2E-23 T 31-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 Gene3D G3DSA:2.40.170.20 163 622 1.4E-112 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 Pfam PF00593 TonB dependent receptor 198 621 6.6E-53 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 153 2.4E-29 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 SUPERFAMILY SSF56935 34 621 9.16E-118 T 31-10-2018 BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 Gene3D G3DSA:2.170.130.10 33 158 3.7E-37 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_06885 6031294a5f471da22c93e030b67ca68b 625 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 1 622 4.2E-279 T 31-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 BRM88_09435 9d19772680061e724954a580008d8857 824 SUPERFAMILY SSF47203 364 510 1.34E-25 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_09435 9d19772680061e724954a580008d8857 824 Gene3D G3DSA:1.20.140.10 364 510 5.0E-96 T 31-10-2018 BRM88_09435 9d19772680061e724954a580008d8857 824 Gene3D G3DSA:1.10.540.10 126 239 5.0E-96 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_09435 9d19772680061e724954a580008d8857 824 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 364 509 3.7E-17 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_09435 9d19772680061e724954a580008d8857 824 SUPERFAMILY SSF56645 123 359 1.7E-40 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_09435 9d19772680061e724954a580008d8857 824 Pfam PF09317 Domain of unknown function (DUF1974) 518 801 1.9E-108 T 31-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 BRM88_09435 9d19772680061e724954a580008d8857 824 Gene3D G3DSA:2.40.110.10 240 363 5.0E-96 T 31-10-2018 BRM88_09435 9d19772680061e724954a580008d8857 824 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 141 236 6.5E-16 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_14830 4dfc6f8cc3acdc16da3d6279a2127710 318 Pfam PF12762 ISXO2-like transposase domain 137 279 1.6E-30 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14830 4dfc6f8cc3acdc16da3d6279a2127710 318 Pfam PF12760 Transposase zinc-ribbon domain 25 69 3.3E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_14830 4dfc6f8cc3acdc16da3d6279a2127710 318 SMART SM01126 137 279 1.1E-45 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_04635 28033929cd79f176f880839655497f09 287 TIGRFAM TIGR01932 hflC: HflC protein 150 284 8.2E-40 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 BRM88_04635 28033929cd79f176f880839655497f09 287 SMART SM00244 19 184 4.3E-17 T 31-10-2018 IPR001107 Band 7 domain BRM88_04635 28033929cd79f176f880839655497f09 287 Pfam PF01145 SPFH domain / Band 7 family 23 201 8.1E-25 T 31-10-2018 IPR001107 Band 7 domain BRM88_04635 28033929cd79f176f880839655497f09 287 PIRSF PIRSF005651 1 287 6.4E-81 T 31-10-2018 IPR010200 HflC GO:0016021|GO:0052547 BRM88_04635 28033929cd79f176f880839655497f09 287 Gene3D G3DSA:3.30.479.30 48 187 3.3E-15 T 31-10-2018 BRM88_04635 28033929cd79f176f880839655497f09 287 SUPERFAMILY SSF117892 51 190 5.75E-20 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 SUPERFAMILY SSF81593 800 895 1.02E-20 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Pfam PF08335 GlnD PII-uridylyltransferase 810 892 1.5E-6 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Pfam PF08335 GlnD PII-uridylyltransferase 296 434 6.5E-41 T 31-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Gene3D G3DSA:3.30.460.100 49 280 5.5E-60 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Gene3D G3DSA:3.30.460.100 555 796 2.5E-68 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Gene3D G3DSA:1.20.120.1510 445 553 4.1E-21 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 SUPERFAMILY SSF81593 286 435 3.45E-41 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 SUPERFAMILY SSF81301 519 794 1.24E-68 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 SUPERFAMILY SSF81301 33 285 3.16E-65 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Gene3D G3DSA:1.20.120.330 284 437 9.8E-53 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Gene3D G3DSA:1.20.120.330 798 926 8.1E-24 T 31-10-2018 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 37 936 18.127 T 31-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 41 275 6.1E-59 T 31-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BRM88_22730 62992ccaa527f4af18cef29dbc0cc61e 941 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 546 789 1.8E-66 T 31-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BRM88_20390 ba572b1a6a0f54d27781ecb7fa419660 273 Pfam PF08478 POTRA domain, FtsQ-type 35 103 1.5E-18 T 31-10-2018 IPR013685 POTRA domain, FtsQ-type BRM88_20390 ba572b1a6a0f54d27781ecb7fa419660 273 Pfam PF03799 Cell division protein FtsQ 107 219 2.2E-21 T 31-10-2018 IPR005548 Cell division protein FtsQ/DivIB BRM88_20390 ba572b1a6a0f54d27781ecb7fa419660 273 Gene3D G3DSA:3.40.50.11690 104 232 5.1E-36 T 31-10-2018 BRM88_20390 ba572b1a6a0f54d27781ecb7fa419660 273 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 4 227 24.274 T 31-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 BRM88_20390 ba572b1a6a0f54d27781ecb7fa419660 273 Gene3D G3DSA:3.10.20.310 33 103 6.8E-22 T 31-10-2018 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 SUPERFAMILY SSF52540 452 833 1.41E-32 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Pfam PF04851 Type III restriction enzyme, res subunit 437 617 7.7E-34 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 SMART SM00490 734 824 4.5E-4 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Gene3D G3DSA:3.40.50.300 420 630 2.1E-54 T 31-10-2018 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 SMART SM00487 435 645 4.2E-15 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Gene3D G3DSA:3.40.50.300 631 855 5.2E-47 T 31-10-2018 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Gene3D G3DSA:3.90.1570.30 231 346 1.3E-11 T 31-10-2018 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Pfam PF00271 Helicase conserved C-terminal domain 719 822 3.9E-8 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Pfam PF08463 EcoEI R protein C-terminal 994 1153 2.6E-32 T 31-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 BRM88_18470 67a60f11fe84f9497f29d4def81c7acb 1157 Pfam PF13643 Domain of unknown function (DUF4145) 24 112 6.0E-6 T 31-10-2018 IPR025285 Domain of unknown function DUF4145 BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 SUPERFAMILY SSF52540 59 686 2.95E-15 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 51 710 33.354 T 31-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 Pfam PF13307 Helicase C-terminal domain 546 704 4.1E-31 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 Gene3D G3DSA:3.40.50.300 42 314 2.5E-32 T 31-10-2018 BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 SMART SM00491 560 691 6.7E-29 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BRM88_01995 6e62474e154a8fffdeafbb70c9509da4 710 Gene3D G3DSA:3.40.50.300 524 708 1.9E-28 T 31-10-2018 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 Gene3D G3DSA:3.40.190.10 91 294 3.0E-51 T 31-10-2018 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 1.1E-13 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 Pfam PF03466 LysR substrate binding domain 126 297 9.8E-19 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 Gene3D G3DSA:3.40.190.10 173 270 3.0E-51 T 31-10-2018 BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 Gene3D G3DSA:1.10.10.10 1 87 8.1E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 SUPERFAMILY SSF46785 3 81 2.25E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_16195 41d77b754a656240e78826c366cbe6b6 326 SUPERFAMILY SSF53850 91 297 2.17E-31 T 31-10-2018 BRM88_09440 179111940f578f8aeef0aa7e86d5ae80 297 Pfam PF12146 Serine aminopeptidase, S33 35 262 1.0E-12 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 BRM88_09440 179111940f578f8aeef0aa7e86d5ae80 297 Gene3D G3DSA:3.40.50.1820 7 275 1.2E-46 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09440 179111940f578f8aeef0aa7e86d5ae80 297 SUPERFAMILY SSF53474 17 275 9.46E-39 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23635 b5dcfd3c7020257d6b3c962d9264f711 439 SUPERFAMILY SSF53098 18 403 9.86E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_23635 b5dcfd3c7020257d6b3c962d9264f711 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_14795 74fe59000351848636d79903fd700475 327 Pfam PF01609 Transposase DDE domain 136 311 3.3E-31 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_14795 74fe59000351848636d79903fd700475 327 Pfam PF05598 Transposase domain (DUF772) 50 124 5.0E-20 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 SMART SM00876 222 314 2.5E-48 T 31-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 SMART SM00729 45 257 1.4E-38 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 Pfam PF04055 Radical SAM superfamily 51 205 7.2E-15 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 TIGRFAM TIGR00433 bioB: biotin synthase 16 312 1.4E-122 T 31-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 Gene3D G3DSA:3.20.20.70 6 317 4.4E-127 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 SUPERFAMILY SSF102114 7 316 8.89E-96 T 31-10-2018 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 Hamap MF_01694 Biotin synthase [bioB]. 7 315 41.691 T 31-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 PIRSF PIRSF001619 1 320 9.7E-132 T 31-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BRM88_02255 be82b6690493ee3123834f4e64b00e14 344 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 222 312 1.1E-19 T 31-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BRM88_03350 8a97447c6fba3bde8163d4f20aaed71e 150 SUPERFAMILY SSF82153 5 150 3.4E-42 T 31-10-2018 IPR036378 FAS1 domain superfamily BRM88_03350 8a97447c6fba3bde8163d4f20aaed71e 150 Pfam PF02469 Fasciclin domain 16 150 1.1E-34 T 31-10-2018 IPR000782 FAS1 domain BRM88_03350 8a97447c6fba3bde8163d4f20aaed71e 150 SMART SM00554 40 150 4.6E-25 T 31-10-2018 IPR000782 FAS1 domain BRM88_03350 8a97447c6fba3bde8163d4f20aaed71e 150 Gene3D G3DSA:2.30.180.10 1 150 5.2E-47 T 31-10-2018 IPR036378 FAS1 domain superfamily BRM88_22425 246229552fd1f58c35077571d41f3a32 448 SMART SM00448 2 115 5.2E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Gene3D G3DSA:1.10.10.60 384 448 2.3E-17 T 31-10-2018 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 412 429 3.1E-13 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 448 3.1E-13 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 SUPERFAMILY SSF46689 352 448 1.16E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 229 244 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Gene3D G3DSA:1.10.8.60 314 383 4.1E-21 T 31-10-2018 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 SUPERFAMILY SSF52540 143 383 3.11E-71 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Pfam PF02954 Bacterial regulatory protein, Fis family 407 446 1.0E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Gene3D G3DSA:3.40.50.2300 2 133 5.0E-31 T 31-10-2018 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Pfam PF00158 Sigma-54 interaction domain 143 310 2.3E-68 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 SMART SM00382 163 306 1.1E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Gene3D G3DSA:3.40.50.300 134 313 6.8E-66 T 31-10-2018 BRM88_22425 246229552fd1f58c35077571d41f3a32 448 SUPERFAMILY SSF52172 2 187 2.7E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_22425 246229552fd1f58c35077571d41f3a32 448 Pfam PF00072 Response regulator receiver domain 4 115 1.7E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_18985 e596ecb801443fdae604eff1dfa28ac1 352 Gene3D G3DSA:3.30.420.470 143 345 9.7E-8 T 31-10-2018 BRM88_18985 e596ecb801443fdae604eff1dfa28ac1 352 Pfam PF13551 Winged helix-turn helix 27 86 9.6E-15 T 31-10-2018 BRM88_18985 e596ecb801443fdae604eff1dfa28ac1 352 Pfam PF13592 Winged helix-turn helix 105 162 9.8E-18 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_18985 e596ecb801443fdae604eff1dfa28ac1 352 SUPERFAMILY SSF46689 20 138 1.49E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_18985 e596ecb801443fdae604eff1dfa28ac1 352 Pfam PF13358 DDE superfamily endonuclease 180 312 5.0E-31 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Pfam PF13899 Thioredoxin-like 670 749 2.1E-13 T 31-10-2018 BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Pfam PF11412 Disulphide bond corrector protein DsbC 37 151 1.3E-34 T 31-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Pfam PF11412 Disulphide bond corrector protein DsbC 198 313 6.4E-31 T 31-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Gene3D G3DSA:3.40.30.10 667 774 8.2E-12 T 31-10-2018 BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 SUPERFAMILY SSF74863 35 152 2.88E-35 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 SUPERFAMILY SSF52833 672 770 6.65E-12 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 SUPERFAMILY SSF74863 198 314 1.22E-30 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 385 564 6.0E-11 T 31-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 ProSitePatterns PS00194 Thioredoxin family active site. 682 700 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Gene3D G3DSA:2.60.40.1250 30 166 4.4E-42 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BRM88_02860 a22fb35097cb11f3c8dd2349fa7336d9 774 Gene3D G3DSA:2.60.40.1250 190 330 3.0E-35 T 31-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 SUPERFAMILY SSF50475 2 199 3.14E-55 T 31-10-2018 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 2 105 4.1E-27 T 31-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 PIRSF PIRSF000190 2 199 5.9E-63 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 4 199 34.71 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 197 2.8E-61 T 31-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 Gene3D G3DSA:2.30.110.10 1 199 3.6E-68 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 168 181 - T 31-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_06375 a5a3542eecf01c6bacdcfc17349f29c6 199 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 158 199 2.0E-14 T 31-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BRM88_03245 cf4192fd63a9c8a9ebd63d710f85f0d1 126 SMART SM00448 9 117 0.0031 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03245 cf4192fd63a9c8a9ebd63d710f85f0d1 126 Gene3D G3DSA:3.40.50.2300 7 126 7.9E-32 T 31-10-2018 BRM88_03245 cf4192fd63a9c8a9ebd63d710f85f0d1 126 SUPERFAMILY SSF52172 7 121 3.7E-15 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 Gene3D G3DSA:1.10.10.470 563 662 1.3E-16 T 31-10-2018 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 Pfam PF00128 Alpha amylase, catalytic domain 24 118 3.9E-15 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 5 863 0.0 T 31-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 Gene3D G3DSA:3.20.20.80 663 770 8.8E-38 T 31-10-2018 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 Gene3D G3DSA:3.20.20.80 205 391 1.2E-33 T 31-10-2018 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 Gene3D G3DSA:3.20.20.80 3 124 3.5E-27 T 31-10-2018 BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 SUPERFAMILY SSF51445 5 766 4.45E-129 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00350 f05e6503062d39f9475e0956a4786e06 867 SMART SM00642 7 743 8.8E-7 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 PIRSF PIRSF005457 1 253 9.4E-91 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 253 42.171 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 SMART SM00849 11 165 1.6E-29 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 253 1.0E-99 T 31-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 253 1.0E-25 T 31-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 Gene3D G3DSA:3.60.15.10 1 253 7.5E-86 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 Pfam PF00753 Metallo-beta-lactamase superfamily 16 165 1.6E-12 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_05225 5d6e2c579617fb9c06cb176ad8f4ddc1 255 SUPERFAMILY SSF56281 1 253 8.39E-63 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Pfam PF13533 Biotin-lipoyl like 60 91 1.3E-7 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 70 90 5.1E-12 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 370 385 5.1E-12 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 265 286 5.1E-12 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 298 322 5.1E-12 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Gene3D G3DSA:2.40.50.100 191 289 1.0E-9 T 31-10-2018 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Gene3D G3DSA:1.10.287.470 193 249 1.0E-9 T 31-10-2018 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Gene3D G3DSA:2.40.30.170 290 382 1.0E-9 T 31-10-2018 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Gene3D G3DSA:2.40.50.100 59 154 1.3E-5 T 31-10-2018 BRM88_18920 16c5e69630a66752627f9a1e43401b35 403 Pfam PF13437 HlyD family secretion protein 254 360 4.0E-13 T 31-10-2018 BRM88_09180 c10561df339fbd4d87425d8a2f210228 354 Gene3D G3DSA:3.60.20.30 208 347 1.5E-50 T 31-10-2018 BRM88_09180 c10561df339fbd4d87425d8a2f210228 354 Pfam PF01112 Asparaginase 59 337 4.5E-79 T 31-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 BRM88_09180 c10561df339fbd4d87425d8a2f210228 354 SUPERFAMILY SSF56235 48 338 3.34E-86 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_05380 b887eb1743d02ff4fc3073602404b216 148 Pfam PF02391 MoaE protein 14 125 2.2E-36 T 31-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BRM88_05380 b887eb1743d02ff4fc3073602404b216 148 SUPERFAMILY SSF54690 11 144 2.09E-44 T 31-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BRM88_05380 b887eb1743d02ff4fc3073602404b216 148 Gene3D G3DSA:3.90.1170.40 2 145 6.7E-47 T 31-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BRM88_03035 15571cc51db31398d56d674ffbc727c4 377 PIRSF PIRSF001259 23 377 5.7E-88 T 31-10-2018 BRM88_03035 15571cc51db31398d56d674ffbc727c4 377 SUPERFAMILY SSF142695 188 344 2.35E-46 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_03035 15571cc51db31398d56d674ffbc727c4 377 Gene3D G3DSA:3.40.50.10990 176 346 5.0E-55 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_03035 15571cc51db31398d56d674ffbc727c4 377 Pfam PF00925 GTP cyclohydrolase II 180 342 2.2E-50 T 31-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_03035 15571cc51db31398d56d674ffbc727c4 377 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 173 369 37.891 T 31-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_14340 7db79ef5f32f00f92b2c4c8e7981b0a7 182 SUPERFAMILY SSF52980 5 178 1.5E-67 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_14340 7db79ef5f32f00f92b2c4c8e7981b0a7 182 SMART SM01322 1 176 8.1E-107 T 31-10-2018 IPR009822 YaeQ BRM88_14340 7db79ef5f32f00f92b2c4c8e7981b0a7 182 Pfam PF07152 YaeQ protein 1 172 5.5E-71 T 31-10-2018 IPR009822 YaeQ BRM88_14340 7db79ef5f32f00f92b2c4c8e7981b0a7 182 Gene3D G3DSA:3.10.640.10 1 182 3.0E-79 T 31-10-2018 IPR038590 YaeQ superfamily BRM88_14340 7db79ef5f32f00f92b2c4c8e7981b0a7 182 PIRSF PIRSF011484 1 179 1.5E-63 T 31-10-2018 IPR009822 YaeQ BRM88_00095 0361eb5e47b1de88a6bfc4d42649cb6e 712 Gene3D G3DSA:2.40.170.20 177 710 2.0E-83 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_00095 0361eb5e47b1de88a6bfc4d42649cb6e 712 Gene3D G3DSA:2.170.130.10 40 165 3.2E-19 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_00095 0361eb5e47b1de88a6bfc4d42649cb6e 712 Pfam PF00593 TonB dependent receptor 234 708 5.2E-43 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_00095 0361eb5e47b1de88a6bfc4d42649cb6e 712 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 162 1.0E-19 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_00095 0361eb5e47b1de88a6bfc4d42649cb6e 712 SUPERFAMILY SSF56935 35 710 3.14E-99 T 31-10-2018 BRM88_17285 3dcfdd5406ce4b73395b61acb6ae36cf 118 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 1 118 18.858 T 31-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 BRM88_17285 3dcfdd5406ce4b73395b61acb6ae36cf 118 Gene3D G3DSA:1.20.58.1610 1 118 9.9E-41 T 31-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17285 3dcfdd5406ce4b73395b61acb6ae36cf 118 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 20 117 1.4E-35 T 31-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_14590 84a664d20242f67d052d4769290dc09f 328 Gene3D G3DSA:1.10.530.10 190 323 2.5E-42 T 31-10-2018 BRM88_14590 84a664d20242f67d052d4769290dc09f 328 Pfam PF01464 Transglycosylase SLT domain 202 299 2.8E-27 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 BRM88_14590 84a664d20242f67d052d4769290dc09f 328 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 219 247 - T 31-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BRM88_14590 84a664d20242f67d052d4769290dc09f 328 SUPERFAMILY SSF53955 193 322 1.46E-44 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Gene3D G3DSA:3.90.1720.10 1624 1740 2.6E-32 T 31-10-2018 BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1547 1622 3.1E-23 T 31-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Pfam PF05593 RHS Repeat 1129 1165 8.3E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Pfam PF05593 RHS Repeat 1113 1144 3.9E-5 T 31-10-2018 IPR031325 RHS repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Pfam PF05593 RHS Repeat 852 888 9.7E-8 T 31-10-2018 IPR031325 RHS repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Pfam PF05593 RHS Repeat 1171 1204 6.0E-6 T 31-10-2018 IPR031325 RHS repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Gene3D G3DSA:2.120.10.80 36 183 4.6E-15 T 31-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 852 892 1.5E-5 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1004 1036 2.3E-4 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1073 1108 2.1E-4 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1172 1211 2.0E-7 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1113 1146 2.6E-5 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1213 1247 4.3E-6 T 31-10-2018 IPR006530 YD repeat BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Gene3D G3DSA:2.180.10.10 1206 1622 1.5E-50 T 31-10-2018 BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 Gene3D G3DSA:2.180.10.10 1073 1205 6.8E-7 T 31-10-2018 BRM88_13860 c011d5308d1eda3da3b7a5878ab6f2de 1746 SUPERFAMILY SSF50965 79 221 5.36E-16 T 31-10-2018 IPR011043 Galactose oxidase/kelch, beta-propeller BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 Gene3D G3DSA:1.10.1740.10 5 125 1.7E-37 T 31-10-2018 BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 6 194 2.2E-106 T 31-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 SUPERFAMILY SSF88659 127 186 6.76E-17 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 Pfam PF08281 Sigma-70, region 4 134 185 3.7E-18 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 SUPERFAMILY SSF88946 10 109 7.38E-28 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 187 1.0E-28 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 Gene3D G3DSA:1.10.10.10 126 195 7.7E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_09645 22ff009d4cce49b332bf4d8aa6ae17ce 206 Pfam PF04542 Sigma-70 region 2 29 94 3.9E-16 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_21865 76cbc814e90124f6640d34bf61acc84a 248 PIRSF PIRSF026671 19 248 2.2E-68 T 31-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BRM88_21865 76cbc814e90124f6640d34bf61acc84a 248 Gene3D G3DSA:3.30.1380.10 46 248 1.0E-59 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_21865 76cbc814e90124f6640d34bf61acc84a 248 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 49 246 29.3 T 31-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BRM88_21865 76cbc814e90124f6640d34bf61acc84a 248 SUPERFAMILY SSF55166 48 244 2.9E-55 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_21865 76cbc814e90124f6640d34bf61acc84a 248 Pfam PF01427 D-ala-D-ala dipeptidase 47 236 1.5E-35 T 31-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 SUPERFAMILY SSF54862 89 223 2.01E-36 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 SUPERFAMILY SSF53706 226 625 8.58E-73 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 158 168 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:3.40.228.10 354 420 1.3E-9 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 SUPERFAMILY SSF54292 15 87 7.18E-19 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:3.40.50.740 293 353 1.3E-9 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:2.40.40.20 653 742 4.6E-12 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 17 607 8.8E-206 T 31-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:3.40.50.740 441 642 1.8E-11 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 SMART SM00929 96 136 2.5E-19 T 31-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:3.30.70.20 137 217 9.8E-8 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 14 89 1.2E-18 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 44 61 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 111 123 - T 31-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Pfam PF00384 Molybdopterin oxidoreductase 442 608 2.4E-8 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Pfam PF00384 Molybdopterin oxidoreductase 285 415 2.0E-17 T 31-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 96 132 6.7E-16 T 31-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 SUPERFAMILY SSF50692 677 735 3.16E-13 T 31-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Gene3D G3DSA:3.10.20.740 14 136 1.1E-40 T 31-10-2018 BRM88_17255 c3fba1674176c8c5c32d3f792d4a3edf 744 Pfam PF01568 Molydopterin dinucleotide binding domain 675 730 4.3E-12 T 31-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 SUPERFAMILY SSF53850 88 295 2.02E-36 T 31-10-2018 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 Pfam PF03466 LysR substrate binding domain 88 292 1.3E-33 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 SUPERFAMILY SSF46785 6 111 1.04E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.5E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 Gene3D G3DSA:3.40.190.10 90 291 8.2E-71 T 31-10-2018 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 Gene3D G3DSA:1.10.10.10 1 89 4.5E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 4.3E-16 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23045 bedee69cf6438964006e6ce9eb82c711 304 Gene3D G3DSA:3.40.190.10 163 268 8.2E-71 T 31-10-2018 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 11 127 3.0E-54 T 31-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 SUPERFAMILY SSF53137 17 130 6.02E-46 T 31-10-2018 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 PIRSF PIRSF002131 1 130 4.6E-52 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 130 32.563 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 Gene3D G3DSA:3.30.420.80 2 130 9.1E-54 T 31-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 Pfam PF00411 Ribosomal protein S11 20 129 5.3E-50 T 31-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BRM88_19005 e8342c2bd9587564536df059f5e437d7 130 ProSitePatterns PS00054 Ribosomal protein S11 signature. 98 120 - T 31-10-2018 IPR018102 Ribosomal S11, conserved site BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 Gene3D G3DSA:3.20.20.140 52 128 5.2E-7 T 31-10-2018 BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 Pfam PF01979 Amidohydrolase family 157 327 1.9E-9 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 SUPERFAMILY SSF51556 51 295 4.54E-27 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 Gene3D G3DSA:2.30.40.10 41 51 5.2E-7 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 SUPERFAMILY SSF51338 3 348 1.33E-7 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_15945 73617f1a1ddf50f624f1c4bbace3ff24 411 Gene3D G3DSA:3.20.20.140 161 321 1.6E-26 T 31-10-2018 BRM88_24650 82ea4680bed88da1e5585414cf608c42 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 46 1.2E-25 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24650 82ea4680bed88da1e5585414cf608c42 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 3 46 16.576 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24650 82ea4680bed88da1e5585414cf608c42 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 4 23 - T 31-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_24650 82ea4680bed88da1e5585414cf608c42 46 Pfam PF00468 Ribosomal protein L34 3 46 5.2E-25 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24650 82ea4680bed88da1e5585414cf608c42 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 4 28 1.0E-7 T 31-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_06030 cf7a0182683bd5a39e61e7c1c1056665 499 Gene3D G3DSA:3.40.50.12780 7 372 8.4E-71 T 31-10-2018 BRM88_06030 cf7a0182683bd5a39e61e7c1c1056665 499 ProSitePatterns PS00455 Putative AMP-binding domain signature. 143 154 - T 31-10-2018 IPR020845 AMP-binding, conserved site BRM88_06030 cf7a0182683bd5a39e61e7c1c1056665 499 Gene3D G3DSA:3.30.300.30 377 487 2.0E-7 T 31-10-2018 BRM88_06030 cf7a0182683bd5a39e61e7c1c1056665 499 SUPERFAMILY SSF56801 26 493 6.67E-89 T 31-10-2018 BRM88_06030 cf7a0182683bd5a39e61e7c1c1056665 499 Pfam PF00501 AMP-binding enzyme 28 379 1.2E-56 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 78 469 1.4E-51 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Gene3D G3DSA:2.30.110.50 159 302 3.6E-39 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 699 855 1.9E-32 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Pfam PF05954 Phage late control gene D protein (GPD) 78 304 1.9E-44 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 534 638 1.5E-33 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Gene3D G3DSA:3.55.50.10 78 158 3.6E-39 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 SUPERFAMILY SSF69255 370 464 1.44E-24 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Gene3D G3DSA:2.40.50.230 364 468 5.5E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 Gene3D G3DSA:3.30.1920.30 194 257 3.6E-39 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 SUPERFAMILY SSF69279 78 151 2.38E-14 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 SUPERFAMILY SSF69279 179 359 1.29E-9 T 31-10-2018 BRM88_18685 229c5143b81dbd471ae582914184e5f8 889 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 78 468 4.7E-63 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_14200 de5c94cc84c1b1d469adfc3cb6910325 393 Gene3D G3DSA:2.160.20.10 16 392 2.2E-109 T 31-10-2018 IPR012334 Pectin lyase fold BRM88_14200 de5c94cc84c1b1d469adfc3cb6910325 393 SUPERFAMILY SSF51126 72 392 4.28E-48 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_14200 de5c94cc84c1b1d469adfc3cb6910325 393 ProSitePatterns PS00503 Pectinesterase signature 2. 251 260 - T 31-10-2018 IPR033131 Pectinesterase, Asp active site KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 BRM88_14200 de5c94cc84c1b1d469adfc3cb6910325 393 Pfam PF01095 Pectinesterase 76 325 9.9E-26 T 31-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 SMART SM00382 98 251 2.2E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 255 281 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 90 118 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 181 205 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 220 248 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 131 148 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 11 35 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 PRINTS PR01874 DNA repair protein radA signature 329 352 3.6E-92 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 Pfam PF13541 Subunit ChlI of Mg-chelatase 354 437 3.8E-10 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 Pfam PF13481 AAA domain 91 229 2.1E-13 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 SUPERFAMILY SSF52540 75 298 5.45E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 SUPERFAMILY SSF54211 262 462 7.59E-42 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 459 5.5E-192 T 31-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 Gene3D G3DSA:3.30.230.10 331 464 1.6E-13 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 Gene3D G3DSA:3.40.50.300 69 292 2.0E-39 T 31-10-2018 BRM88_08525 f68d563167b676e1f6c4ccb22ee73883 464 Hamap MF_01498 DNA repair protein RadA [radA]. 22 463 43.415 T 31-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 Gene3D G3DSA:3.30.700.10 40 142 2.6E-23 T 31-10-2018 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 17 142 2.7E-28 T 31-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 15 37 6.2E-4 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 17 42 1.2E-10 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 PRINTS PR00813 Bacterial general secretion pathway protein G signature 53 71 1.2E-10 T 31-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 SUPERFAMILY SSF54523 45 141 6.28E-24 T 31-10-2018 BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 Pfam PF08334 Type II secretion system (T2SS), protein G 40 142 1.2E-28 T 31-10-2018 IPR013545 Type II secretion system protein G BRM88_04265 ac51dadaa41e8950b72b1c5d04ff126f 143 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 16 36 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.70.1320 133 324 2.7E-269 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:1.20.1640.10 16 496 2.7E-269 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.70.1440 659 856 2.7E-269 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82866 301 490 1.83E-32 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Pfam PF00873 AcrB/AcrD/AcrF family 6 1015 3.6E-258 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:1.20.1640.10 497 1012 2.7E-269 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 537 554 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 5.2E-22 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82866 793 1016 1.1E-46 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82714 182 262 1.09E-13 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.2090.10 709 797 2.7E-269 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1016 2.1E-286 T 31-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.70.1430 554 657 2.7E-269 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82693 551 651 8.37E-10 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82693 48 125 6.28E-17 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82714 708 793 1.44E-18 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.2090.10 178 269 2.7E-269 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 SUPERFAMILY SSF82693 137 324 5.23E-12 T 31-10-2018 BRM88_12595 a455beecb1288322149d109862e1a9bd 1030 Gene3D G3DSA:3.30.70.1430 42 805 2.7E-269 T 31-10-2018 BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 SUPERFAMILY SSF53383 13 411 9.52E-123 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 225 244 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 Gene3D G3DSA:3.40.640.10 45 304 5.0E-162 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 16 413 8.2E-173 T 31-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 PIRSF PIRSF005572 31 412 5.0E-48 T 31-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 Pfam PF00266 Aminotransferase class-V 34 402 3.4E-144 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_07180 cfc88dd7ec7c32be58a9767c94b45936 414 Gene3D G3DSA:3.90.1150.10 17 406 5.0E-162 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 61 77 5.0E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 5.0E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 5.0E-7 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 SMART SM00347 37 137 1.7E-18 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 SUPERFAMILY SSF46785 12 149 6.17E-33 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 Pfam PF01047 MarR family 44 102 4.5E-14 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_23660 c019af429dbb9dd6a3583abc64ed3a91 152 Gene3D G3DSA:1.10.10.10 17 151 8.6E-37 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_00345 221b35e4ee70b91f806bc148c54e291e 61 Pfam PF11154 Protein of unknown function (DUF2934) 5 41 6.6E-12 T 31-10-2018 IPR021327 Protein of unknown function DUF2934 BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 Gene3D G3DSA:1.10.10.10 1 53 4.7E-9 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 SUPERFAMILY SSF53850 56 177 1.54E-17 T 31-10-2018 BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 Gene3D G3DSA:3.40.190.10 126 178 2.4E-23 T 31-10-2018 BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 Pfam PF03466 LysR substrate binding domain 56 179 2.5E-19 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 SUPERFAMILY SSF46785 1 79 3.08E-9 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_10600 81812efcc0b5c65ce644539ea8139393 201 Gene3D G3DSA:3.40.190.10 60 125 2.4E-23 T 31-10-2018 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 509 662 8.6E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 Pfam PF12729 Four helix bundle sensory module for signal transduction 9 182 1.5E-17 T 31-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 SMART SM00304 214 266 3.9E-8 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 SMART SM00304 395 447 45.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 Gene3D G3DSA:1.20.120.1530 207 352 2.7E-41 T 31-10-2018 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 SUPERFAMILY SSF58104 415 697 9.55E-72 T 31-10-2018 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 SMART SM00283 448 695 2.6E-86 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 Gene3D G3DSA:1.10.287.950 397 697 2.0E-84 T 31-10-2018 BRM88_15170 28b9851c301fdbdf15647dd0e0b0b164 753 SUPERFAMILY SSF158472 214 265 3.53E-9 T 31-10-2018 BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 SUPERFAMILY SSF56935 24 720 3.05E-97 T 31-10-2018 BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 703 720 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 159 9.8E-7 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 720 1.4E-172 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 Gene3D G3DSA:2.40.170.20 170 720 2.8E-83 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 Pfam PF00593 TonB dependent receptor 233 718 4.5E-45 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_04335 1edb705682039578cfa1fb2bf0840465 720 Gene3D G3DSA:2.170.130.10 33 169 2.7E-15 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_08640 41bcc584387f52b56c234c724bdba782 227 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 227 1.5E-111 T 31-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE BRM88_08640 41bcc584387f52b56c234c724bdba782 227 Gene3D G3DSA:3.20.20.70 18 221 5.8E-36 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_08640 41bcc584387f52b56c234c724bdba782 227 SUPERFAMILY SSF102114 42 117 1.29E-14 T 31-10-2018 BRM88_08640 41bcc584387f52b56c234c724bdba782 227 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 224 36.515 T 31-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BRM88_08640 41bcc584387f52b56c234c724bdba782 227 Pfam PF04055 Radical SAM superfamily 41 118 7.8E-14 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_08640 41bcc584387f52b56c234c724bdba782 227 PIRSF PIRSF000370 16 227 8.3E-69 T 31-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BRM88_08640 41bcc584387f52b56c234c724bdba782 227 Pfam PF13394 4Fe-4S single cluster domain 39 121 1.9E-10 T 31-10-2018 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 31-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 SUPERFAMILY SSF51395 1 338 7.66E-102 T 31-10-2018 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 PIRSF PIRSF000164 14 344 1.5E-96 T 31-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 Pfam PF01180 Dihydroorotate dehydrogenase 48 335 5.5E-90 T 31-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 340 1.0E-125 T 31-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 31-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 336 50.026 T 31-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 BRM88_11650 32a58d2e5a48a38fc4a02b5579cfa8a2 351 Gene3D G3DSA:3.20.20.70 1 336 9.0E-130 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_03780 158e3663b7c01158a33406b6cdf4ee17 674 Pfam PF01432 Peptidase family M3 223 671 6.1E-142 T 31-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 BRM88_03780 158e3663b7c01158a33406b6cdf4ee17 674 Gene3D G3DSA:1.10.1370.40 14 669 3.8E-249 T 31-10-2018 BRM88_03780 158e3663b7c01158a33406b6cdf4ee17 674 Gene3D G3DSA:1.10.1370.10 139 604 3.8E-249 T 31-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BRM88_03780 158e3663b7c01158a33406b6cdf4ee17 674 SUPERFAMILY SSF55486 1 671 7.88E-192 T 31-10-2018 BRM88_01495 da1e0a089f81d77bb7594432fdd24084 96 Gene3D G3DSA:3.30.750.24 1 83 2.6E-7 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_01495 da1e0a089f81d77bb7594432fdd24084 96 Pfam PF13466 STAS domain 13 77 1.3E-10 T 31-10-2018 IPR002645 STAS domain BRM88_01495 da1e0a089f81d77bb7594432fdd24084 96 SUPERFAMILY SSF52091 11 73 1.02E-8 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_06265 2242d4a4f24b7d05b9959e3b8d251d7e 289 Pfam PF00665 Integrase core domain 175 268 1.3E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_06265 2242d4a4f24b7d05b9959e3b8d251d7e 289 SUPERFAMILY SSF53098 169 268 2.28E-12 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_06265 2242d4a4f24b7d05b9959e3b8d251d7e 289 Pfam PF13936 Helix-turn-helix domain 7 49 8.9E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 Gene3D G3DSA:1.10.760.10 31 116 4.9E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 Gene3D G3DSA:1.10.760.10 129 227 1.7E-24 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 PIRSF PIRSF000005 3 228 1.1E-61 T 31-10-2018 IPR024167 Cytochrome c4-like GO:0005506|GO:0009055|GO:0020037|GO:0042597 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 SUPERFAMILY SSF46626 130 228 3.93E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 Pfam PF00034 Cytochrome c 145 226 1.5E-9 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 Pfam PF00034 Cytochrome c 35 113 1.7E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_20720 fa86876aeba660947d5bb93c9c9531fc 246 SUPERFAMILY SSF46626 42 114 6.11E-18 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM01231 1707 1845 1.6E-11 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF47226 1541 1658 1.44E-23 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF47226 294 412 1.18E-7 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1894 2030 3.6E-15 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF55874 1847 2028 9.43E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF47226 736 847 5.23E-24 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM00260 2023 2161 8.7E-22 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:2.30.30.40 2031 2157 1.3E-29 T 31-10-2018 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:1.20.120.160 894 1022 2.5E-5 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:1.20.120.160 732 863 9.6E-22 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 1709 1844 2.2E-5 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1935 1949 1.3E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1991 2009 1.3E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 PRINTS PR00344 Bacterial sensor protein C-terminal signature 2015 2028 1.3E-10 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF50341 2030 2160 6.93E-23 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF52172 2186 2305 7.54E-34 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:3.30.565.10 1844 2030 1.1E-49 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:2.40.50.180 2054 2116 1.3E-29 T 31-10-2018 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM00448 2184 2297 1.7E-33 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF01627 Hpt domain 740 828 2.0E-12 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF01627 Hpt domain 900 996 3.4E-5 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF01627 Hpt domain 13 111 8.3E-7 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF01627 Hpt domain 1543 1636 8.3E-15 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM00387 1890 2031 3.4E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM00073 1540 1638 7.1E-16 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SMART SM00073 737 834 1.8E-5 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF00072 Response regulator receiver domain 2186 2296 4.9E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Pfam PF01584 CheW-like domain 2035 2163 1.9E-19 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:1.20.120.160 1542 1666 1.8E-24 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF47226 897 1018 1.91E-13 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 Gene3D G3DSA:3.40.50.12740 2185 2308 5.2E-36 T 31-10-2018 BRM88_09135 c3e16d0316ab2024a962a37a3a9d54b2 2308 SUPERFAMILY SSF47226 13 133 3.01E-18 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 Gene3D G3DSA:3.40.630.10 40 417 4.3E-134 T 31-10-2018 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 SUPERFAMILY SSF53187 29 434 2.2E-80 T 31-10-2018 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 41 420 2.1E-103 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 Gene3D G3DSA:3.30.70.360 221 338 4.3E-134 T 31-10-2018 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 Pfam PF01546 Peptidase family M20/M25/M40 98 426 5.1E-33 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 SUPERFAMILY SSF55031 223 331 4.58E-27 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 Pfam PF07687 Peptidase dimerisation domain 226 323 9.3E-7 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain BRM88_22330 50c4ca62ae1348f3150c48735a30c948 438 PIRSF PIRSF005962 25 435 2.3E-117 T 31-10-2018 IPR017439 Amidohydrolase GO:0016787 BRM88_07760 193e0fc0aa6a65b7a5f7dec485b86808 243 Gene3D G3DSA:3.60.110.10 4 227 8.8E-36 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_07760 193e0fc0aa6a65b7a5f7dec485b86808 243 SUPERFAMILY SSF56317 13 225 1.31E-38 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_07760 193e0fc0aa6a65b7a5f7dec485b86808 243 Pfam PF00795 Carbon-nitrogen hydrolase 15 162 1.3E-13 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 SMART SM00357 3 67 8.4E-31 T 31-10-2018 IPR011129 Cold shock domain GO:0003676 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 Gene3D G3DSA:2.40.50.140 2 65 4.2E-30 T 31-10-2018 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 PRINTS PR00050 Cold shock protein signature 4 19 1.1E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 PRINTS PR00050 Cold shock protein signature 25 34 1.1E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 PRINTS PR00050 Cold shock protein signature 40 58 1.1E-17 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 SUPERFAMILY SSF50249 1 67 3.86E-25 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 PIRSF PIRSF002599 1 68 7.1E-25 T 31-10-2018 IPR012156 Cold shock, CspA GO:0003676 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 2.5E-31 T 31-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BRM88_09745 4a7f470e18c75cc7b5b654b4af364fa7 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 31-10-2018 IPR019844 Cold-shock conserved site BRM88_02120 5a1574751350863b6c23c2bf8b754c1b 79 SUPERFAMILY SSF52540 4 77 9.63E-6 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02120 5a1574751350863b6c23c2bf8b754c1b 79 Gene3D G3DSA:3.40.50.300 5 79 4.7E-7 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 Pfam PF00702 haloacid dehalogenase-like hydrolase 304 530 8.1E-34 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 SUPERFAMILY SSF81653 116 210 1.7E-21 T 31-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BRM88_20505 b049325f4b782e308582202ec395bc78 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 371 606 3.5E-41 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BRM88_20505 b049325f4b782e308582202ec395bc78 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 78 344 1.2E-32 T 31-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BRM88_20505 b049325f4b782e308582202ec395bc78 682 SUPERFAMILY SSF81665 44 302 1.7E-7 T 31-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BRM88_20505 b049325f4b782e308582202ec395bc78 682 Gene3D G3DSA:2.70.150.20 108 215 7.7E-26 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 310 316 - T 31-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BRM88_20505 b049325f4b782e308582202ec395bc78 682 Pfam PF00122 E1-E2 ATPase 113 285 7.6E-34 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 14 676 9.0E-286 T 31-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 BRM88_20505 b049325f4b782e308582202ec395bc78 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 551 2.1E-22 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 463 473 2.1E-22 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 535 2.1E-22 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 157 171 2.1E-22 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 308 322 2.1E-22 T 31-10-2018 BRM88_20505 b049325f4b782e308582202ec395bc78 682 SUPERFAMILY SSF56784 304 564 2.56E-37 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_20505 b049325f4b782e308582202ec395bc78 682 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 17 680 39.959 T 31-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 BRM88_20505 b049325f4b782e308582202ec395bc78 682 Gene3D G3DSA:3.40.1110.10 319 448 7.9E-44 T 31-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BRM88_09450 c0482f4b1ace0e1c85b99b3ab73dd777 969 SUPERFAMILY SSF56935 35 969 6.59E-86 T 31-10-2018 BRM88_09450 c0482f4b1ace0e1c85b99b3ab73dd777 969 Gene3D G3DSA:2.170.130.10 38 171 3.9E-30 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_09450 c0482f4b1ace0e1c85b99b3ab73dd777 969 Pfam PF00593 TonB dependent receptor 399 968 2.1E-36 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_09450 c0482f4b1ace0e1c85b99b3ab73dd777 969 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 167 2.1E-21 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_09450 c0482f4b1ace0e1c85b99b3ab73dd777 969 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 952 969 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site BRM88_10085 e6936ad3dd7aa7cf896d23bdadedade1 352 SUPERFAMILY SSF46689 20 138 1.08E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_10085 e6936ad3dd7aa7cf896d23bdadedade1 352 Gene3D G3DSA:3.30.420.470 143 343 4.5E-7 T 31-10-2018 BRM88_10085 e6936ad3dd7aa7cf896d23bdadedade1 352 Pfam PF13551 Winged helix-turn helix 27 86 3.0E-14 T 31-10-2018 BRM88_10085 e6936ad3dd7aa7cf896d23bdadedade1 352 Pfam PF13592 Winged helix-turn helix 104 162 1.9E-17 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_10085 e6936ad3dd7aa7cf896d23bdadedade1 352 Pfam PF13358 DDE superfamily endonuclease 180 317 4.8E-30 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 SUPERFAMILY SSF52540 3 243 1.21E-83 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 Gene3D G3DSA:3.40.50.300 3 260 2.8E-77 T 31-10-2018 BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 SUPERFAMILY SSF50331 240 338 3.74E-9 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 1.9E-112 T 31-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 SMART SM00382 27 214 1.2E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 Pfam PF12857 TOBE-like domain 282 336 6.8E-8 T 31-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 BRM88_19690 e27edbe1bf5c5d02edf34321dbc70875 344 Pfam PF00005 ABC transporter 18 164 1.6E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_14125 c85467979a6985dab494795047bc935e 346 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 227 336 1.4E-42 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BRM88_14125 c85467979a6985dab494795047bc935e 346 PRINTS PR01217 Proline rich extensin signature 41 62 3.2E-9 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 PRINTS PR01217 Proline rich extensin signature 70 86 3.2E-9 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 PRINTS PR01217 Proline rich extensin signature 26 38 3.2E-9 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 PRINTS PR01217 Proline rich extensin signature 90 107 3.2E-9 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 PRINTS PR01217 Proline rich extensin signature 111 136 3.2E-9 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 Gene3D G3DSA:1.20.120.910 216 345 1.9E-31 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 223 345 28.523 T 31-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BRM88_14125 c85467979a6985dab494795047bc935e 346 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 304 336 1.2E-7 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BRM88_14125 c85467979a6985dab494795047bc935e 346 SUPERFAMILY SSF57716 306 344 3.85E-6 T 31-10-2018 BRM88_14125 c85467979a6985dab494795047bc935e 346 SUPERFAMILY SSF109635 213 305 6.15E-29 T 31-10-2018 IPR037187 DksA, N-terminal domain superfamily BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Pfam PF00750 tRNA synthetases class I (R) 103 410 8.4E-24 T 31-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Pfam PF05746 DALR anticodon binding domain 441 562 8.4E-36 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 562 25.367 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 SUPERFAMILY SSF52374 117 452 1.07E-87 T 31-10-2018 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Gene3D G3DSA:3.40.50.620 122 435 1.9E-156 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 SMART SM01016 3 92 1.2E-36 T 31-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 30 562 2.1E-126 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 131 140 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 160 173 1.9E-22 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 136 152 1.9E-22 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 121 136 1.9E-22 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 308 329 1.9E-22 T 31-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 SUPERFAMILY SSF47323 436 562 9.16E-36 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Gene3D G3DSA:3.30.1360.70 1 110 4.3E-25 T 31-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 92 5.7E-24 T 31-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 SMART SM00836 441 562 4.0E-56 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 Gene3D G3DSA:1.10.730.10 436 562 1.9E-156 T 31-10-2018 BRM88_02480 d2dd9414c3b6ea9e9bc9f10cc7b8d166 562 SUPERFAMILY SSF55190 4 112 4.32E-26 T 31-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Gene3D G3DSA:3.40.10.10 2 75 8.4E-25 T 31-10-2018 IPR035451 Ada-like domain superfamily BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 139 181 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SMART SM00478 324 480 5.6E-7 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Pfam PF12833 Helix-turn-helix domain 108 187 6.1E-21 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Pfam PF06029 AlkA N-terminal domain 197 314 2.2E-32 T 31-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Gene3D G3DSA:3.30.310.20 197 314 4.1E-27 T 31-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Gene3D G3DSA:1.10.1670.10 432 484 4.2E-11 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SUPERFAMILY SSF48150 303 479 5.23E-39 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SMART SM01009 197 314 3.9E-44 T 31-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SUPERFAMILY SSF55945 197 295 1.4E-22 T 31-10-2018 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Gene3D G3DSA:1.10.340.30 315 430 7.6E-28 T 31-10-2018 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SMART SM00342 102 185 1.8E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SUPERFAMILY SSF57884 3 84 3.92E-29 T 31-10-2018 IPR035451 Ada-like domain superfamily BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 SUPERFAMILY SSF46689 139 188 1.34E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Gene3D G3DSA:1.10.10.60 81 191 3.3E-22 T 31-10-2018 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 320 455 1.5E-5 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_07960 b901a3026b4e2852599d85a49097aa79 487 Pfam PF02805 Metal binding domain of Ada 11 74 5.1E-25 T 31-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 BRM88_19170 7c8b5793869f07292f848c74146b91db 177 Gene3D G3DSA:3.30.70.1730 4 134 4.5E-29 T 31-10-2018 BRM88_19170 7c8b5793869f07292f848c74146b91db 177 SUPERFAMILY SSF160369 4 160 5.49E-43 T 31-10-2018 BRM88_19170 7c8b5793869f07292f848c74146b91db 177 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 25.116 T 31-10-2018 IPR022973 Ribosomal protein L10 BRM88_19170 7c8b5793869f07292f848c74146b91db 177 Pfam PF00466 Ribosomal protein L10 6 101 8.4E-23 T 31-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 Pfam PF03486 HI0933-like protein 5 391 3.9E-143 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 Gene3D G3DSA:2.40.30.10 189 338 2.2E-126 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.5E-6 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-6 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 1.5E-6 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 Gene3D G3DSA:3.50.50.60 7 390 2.2E-126 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_14345 a6fd92aedad361a513171d484b33682f 393 SUPERFAMILY SSF51905 1 391 5.02E-58 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_14345 a6fd92aedad361a513171d484b33682f 393 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 390 1.2E-123 T 31-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.5E-8 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 361 368 1.5E-8 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 1.5E-8 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 SUPERFAMILY SSF160996 191 339 3.27E-36 T 31-10-2018 BRM88_14345 a6fd92aedad361a513171d484b33682f 393 Gene3D G3DSA:1.10.8.260 262 321 2.2E-126 T 31-10-2018 IPR023166 HI0933-like insert domain superfamily BRM88_20215 97307217b20b291625843ead555bf093 532 SUPERFAMILY SSF53254 150 526 2.36E-53 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_20215 97307217b20b291625843ead555bf093 532 Gene3D G3DSA:3.40.50.1240 280 393 8.4E-124 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_20215 97307217b20b291625843ead555bf093 532 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 153 257 1.1E-8 T 31-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 BRM88_20215 97307217b20b291625843ead555bf093 532 Gene3D G3DSA:3.40.50.1240 154 521 8.4E-124 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_20215 97307217b20b291625843ead555bf093 532 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 154 168 - T 31-10-2018 IPR033379 Histidine acid phosphatase active site BRM88_17610 2a8915d1df8fc0ec08e502b77aaa1898 291 Pfam PF00348 Polyprenyl synthetase 30 257 3.0E-56 T 31-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BRM88_17610 2a8915d1df8fc0ec08e502b77aaa1898 291 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 210 222 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site BRM88_17610 2a8915d1df8fc0ec08e502b77aaa1898 291 SUPERFAMILY SSF48576 6 276 1.06E-82 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily BRM88_17610 2a8915d1df8fc0ec08e502b77aaa1898 291 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site BRM88_17610 2a8915d1df8fc0ec08e502b77aaa1898 291 Gene3D G3DSA:1.10.600.10 4 288 8.0E-92 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily BRM88_13510 2872dd47e536647a7ef6dd99a530e870 103 SUPERFAMILY SSF101498 4 97 1.24E-13 T 31-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily BRM88_13510 2872dd47e536647a7ef6dd99a530e870 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 4 97 1.6E-18 T 31-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BRM88_13510 2872dd47e536647a7ef6dd99a530e870 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 96 6.1E-14 T 31-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 274 311 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 SUPERFAMILY SSF53383 26 466 4.63E-123 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 Pfam PF00202 Aminotransferase class-III 46 465 7.1E-115 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 PIRSF PIRSF000521 37 440 3.7E-27 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 Gene3D G3DSA:3.40.640.10 82 363 9.6E-153 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 31 465 3.6E-165 T 31-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 BRM88_09355 aa6b90abefa8350c07fc2439f82bd0f8 472 Gene3D G3DSA:3.90.1150.10 27 455 9.6E-153 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_22630 daa2811375c32619656bad58c0734355 895 SUPERFAMILY SSF52518 478 704 3.09E-89 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_22630 daa2811375c32619656bad58c0734355 895 SUPERFAMILY SSF52922 706 893 3.66E-59 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_22630 daa2811375c32619656bad58c0734355 895 Gene3D G3DSA:3.40.50.970 59 475 1.4E-127 T 31-10-2018 BRM88_22630 daa2811375c32619656bad58c0734355 895 PIRSF PIRSF000156 1 895 0.0 T 31-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BRM88_22630 daa2811375c32619656bad58c0734355 895 Gene3D G3DSA:3.40.50.970 476 710 2.3E-99 T 31-10-2018 BRM88_22630 daa2811375c32619656bad58c0734355 895 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 139 294 1.8E-7 T 31-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BRM88_22630 daa2811375c32619656bad58c0734355 895 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 9 893 0.0 T 31-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BRM88_22630 daa2811375c32619656bad58c0734355 895 SUPERFAMILY SSF52518 60 472 1.1E-133 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_22630 daa2811375c32619656bad58c0734355 895 Gene3D G3DSA:3.40.50.920 711 894 1.7E-74 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_12170 02e6c5ff96ed3d5821d0f9a57a10986a 244 Gene3D G3DSA:3.40.50.300 16 243 1.8E-62 T 31-10-2018 BRM88_12170 02e6c5ff96ed3d5821d0f9a57a10986a 244 SMART SM00382 47 235 2.3E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_12170 02e6c5ff96ed3d5821d0f9a57a10986a 244 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 18 237 1.9E-102 T 31-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 BRM88_12170 02e6c5ff96ed3d5821d0f9a57a10986a 244 Pfam PF00005 ABC transporter 39 186 1.1E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_12170 02e6c5ff96ed3d5821d0f9a57a10986a 244 SUPERFAMILY SSF52540 18 240 4.15E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03895 cd08f83fd0052d0038957077899e6930 266 Gene3D G3DSA:3.40.50.150 60 219 4.3E-28 T 31-10-2018 BRM88_03895 cd08f83fd0052d0038957077899e6930 266 Pfam PF05050 Methyltransferase FkbM domain 73 229 2.8E-9 T 31-10-2018 IPR006342 Methyltransferase FkbM BRM88_03895 cd08f83fd0052d0038957077899e6930 266 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 71 202 1.3E-24 T 31-10-2018 IPR006342 Methyltransferase FkbM BRM88_03895 cd08f83fd0052d0038957077899e6930 266 SUPERFAMILY SSF53335 64 233 6.52E-38 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 SUPERFAMILY SSF46785 7 87 1.78E-28 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 Gene3D G3DSA:1.10.10.10 1 93 8.3E-33 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 Gene3D G3DSA:1.10.10.10 94 170 8.3E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 Pfam PF04337 Protein of unknown function, DUF480 10 153 2.8E-52 T 31-10-2018 IPR007432 Protein of unknown function DUF480 BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 Hamap MF_01584 UPF0502 protein YceH [yceH]. 10 214 29.004 T 31-10-2018 IPR007432 Protein of unknown function DUF480 BRM88_01195 79f82a7845b87381e1bbaf7773c597c5 221 SUPERFAMILY SSF46785 90 169 3.66E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_13125 95462bc20918d84ec67545d049ac1616 143 SUPERFAMILY SSF46785 5 56 2.73E-12 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_13125 95462bc20918d84ec67545d049ac1616 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 9.6E-14 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 9.6E-14 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 9.6E-14 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 Pfam PF01037 Lrp/AsnC ligand binding domain 69 139 8.2E-15 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BRM88_13125 95462bc20918d84ec67545d049ac1616 143 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BRM88_13125 95462bc20918d84ec67545d049ac1616 143 Gene3D G3DSA:3.30.70.920 67 140 3.2E-16 T 31-10-2018 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 SMART SM00344 7 109 9.0E-21 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 49 1.1E-14 T 31-10-2018 BRM88_13125 95462bc20918d84ec67545d049ac1616 143 Gene3D G3DSA:1.10.10.10 5 55 5.9E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_13125 95462bc20918d84ec67545d049ac1616 143 SUPERFAMILY SSF54909 65 142 1.61E-15 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_01250 b684809d95b5e9fe5213ab59150cb579 72 Pfam PF04325 Protein of unknown function (DUF465) 19 63 5.5E-13 T 31-10-2018 IPR007420 Protein of unknown function DUF465 BRM88_01250 b684809d95b5e9fe5213ab59150cb579 72 Gene3D G3DSA:1.20.58.660 2 67 8.6E-7 T 31-10-2018 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 Gene3D G3DSA:3.40.718.10 1 357 1.4E-148 T 31-10-2018 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 31-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 353 2.1E-135 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 52.501 T 31-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 SUPERFAMILY SSF53659 1 357 5.28E-124 T 31-10-2018 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 SMART SM01329 4 353 1.3E-206 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BRM88_04755 b10a2ec5c524731cdde9cf4fe2bbedfa 357 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 1.1E-157 T 31-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 Pfam PF00270 DEAD/DEAH box helicase 251 411 1.3E-8 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 SUPERFAMILY SSF52540 249 560 4.6E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 Gene3D G3DSA:3.40.50.300 205 420 4.7E-15 T 31-10-2018 BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 SUPERFAMILY SSF109604 9 103 4.49E-8 T 31-10-2018 BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 251 577 9.5E-31 T 31-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 Gene3D G3DSA:3.40.50.300 439 608 2.4E-12 T 31-10-2018 BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 19 184 2.8E-27 T 31-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 SMART SM00487 223 446 0.0051 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_04405 6273bc4136c476b0d958646a0b12fa7b 763 Gene3D G3DSA:1.10.3210.30 14 128 1.5E-6 T 31-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily BRM88_21315 a9cff866af943fcc43e8094f060b381f 394 SUPERFAMILY SSF53383 12 392 3.81E-94 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_21315 a9cff866af943fcc43e8094f060b381f 394 Pfam PF00155 Aminotransferase class I and II 39 387 7.3E-51 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_21315 a9cff866af943fcc43e8094f060b381f 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BRM88_21315 a9cff866af943fcc43e8094f060b381f 394 Gene3D G3DSA:3.40.640.10 11 393 7.0E-115 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_14465 0cb995037b2ceff614776642c60c5110 133 SUPERFAMILY SSF81273 81 111 3.84E-6 T 31-10-2018 BRM88_14465 0cb995037b2ceff614776642c60c5110 133 SMART SM00528 78 121 8.2E-18 T 31-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BRM88_14465 0cb995037b2ceff614776642c60c5110 133 Gene3D G3DSA:3.30.160.510 61 124 1.0E-26 T 31-10-2018 BRM88_14465 0cb995037b2ceff614776642c60c5110 133 Pfam PF00816 H-NS histone family 17 111 2.2E-17 T 31-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82693 40 134 1.02E-21 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.70.1430 558 657 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82714 709 793 3.4E-19 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82693 556 653 6.28E-14 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.2090.10 178 269 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82866 795 1016 1.57E-49 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82866 292 490 9.94E-45 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82714 182 265 1.31E-18 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:1.20.1640.10 504 1010 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.70.1440 658 853 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 615 629 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 6.8E-77 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.70.1430 40 804 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.2090.10 708 796 0.0 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Pfam PF00873 AcrB/AcrD/AcrF family 4 1013 6.2E-299 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:3.30.70.1320 134 326 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 Gene3D G3DSA:1.20.1640.10 10 503 0.0 T 31-10-2018 BRM88_18040 618cd8fd5f03d59c5dd07790e48e1a23 1041 SUPERFAMILY SSF82693 136 324 6.8E-21 T 31-10-2018 BRM88_02165 ec6e61b9bf87094dee2ca7137c404572 575 SUPERFAMILY SSF53187 52 551 1.45E-64 T 31-10-2018 BRM88_02165 ec6e61b9bf87094dee2ca7137c404572 575 SUPERFAMILY SSF52025 152 237 4.19E-9 T 31-10-2018 BRM88_02165 ec6e61b9bf87094dee2ca7137c404572 575 Pfam PF02225 PA domain 153 258 2.3E-9 T 31-10-2018 IPR003137 PA domain BRM88_02165 ec6e61b9bf87094dee2ca7137c404572 575 Pfam PF04389 Peptidase family M28 324 540 1.4E-48 T 31-10-2018 IPR007484 Peptidase M28 BRM88_21370 20542b0d2c024a2567e734cc96baf9c5 222 Gene3D G3DSA:3.40.50.1820 3 218 4.0E-63 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21370 20542b0d2c024a2567e734cc96baf9c5 222 SUPERFAMILY SSF53474 9 218 1.38E-49 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21370 20542b0d2c024a2567e734cc96baf9c5 222 Pfam PF02230 Phospholipase/Carboxylesterase 14 216 1.3E-45 T 31-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 SUPERFAMILY SSF53335 7 284 1.26E-74 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 Pfam PF01564 Spermine/spermidine synthase domain 63 245 8.6E-53 T 31-10-2018 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 Pfam PF17284 Spermidine synthase tetramerisation domain 7 58 6.7E-9 T 31-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 83 96 - T 31-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 Gene3D G3DSA:3.40.50.150 59 285 4.6E-62 T 31-10-2018 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 36.166 T 31-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 Gene3D G3DSA:2.30.140.10 3 58 1.2E-18 T 31-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BRM88_01040 edc3f7782857b2e224a0753e68ab60b2 285 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 4.5E-80 T 31-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 SUPERFAMILY SSF54919 1 140 2.23E-55 T 31-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.345 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 5.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 5.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 5.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.8E-41 T 31-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 Pfam PF00334 Nucleoside diphosphate kinase 4 137 1.4E-53 T 31-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 Gene3D G3DSA:3.30.70.141 1 141 1.1E-55 T 31-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 31-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_13350 10ffb9406244f13436ae0a009d3a2301 141 SMART SM00562 3 140 1.0E-83 T 31-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 SUPERFAMILY SSF53218 178 326 4.97E-32 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Pfam PF00994 Probable molybdopterin binding domain 182 321 2.0E-24 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Gene3D G3DSA:2.40.340.10 330 393 2.7E-106 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 290 - T 31-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 SUPERFAMILY SSF63882 1 177 4.97E-45 T 31-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 SUPERFAMILY SSF63867 332 405 2.35E-7 T 31-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Gene3D G3DSA:3.40.980.10 176 329 2.7E-106 T 31-10-2018 IPR036425 MoaB/Mog-like domain superfamily BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Pfam PF03454 MoeA C-terminal region (domain IV) 334 395 3.2E-5 T 31-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 SMART SM00852 181 322 7.7E-27 T 31-10-2018 IPR001453 MoaB/Mog domain BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Gene3D G3DSA:2.170.190.11 44 142 2.7E-106 T 31-10-2018 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 168 2.5E-39 T 31-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_16585 95433359c22c361cf9b16262dfdec998 417 Gene3D G3DSA:3.90.105.10 20 175 2.7E-106 T 31-10-2018 BRM88_15845 12d57db9339fd7a7a00e28ea272110a2 375 Pfam PF01384 Phosphate transporter family 19 361 3.4E-79 T 31-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Gene3D G3DSA:3.30.1840.10 22 334 1.0E-93 T 31-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Gene3D G3DSA:3.30.870.10 337 519 2.2E-71 T 31-10-2018 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 SUPERFAMILY SSF56024 519 699 2.24E-69 T 31-10-2018 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Gene3D G3DSA:3.30.870.10 523 700 1.4E-64 T 31-10-2018 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Hamap MF_00347 Polyphosphate kinase [ppk]. 24 699 27.654 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Pfam PF02503 Polyphosphate kinase middle domain 141 342 1.4E-57 T 31-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Pfam PF13090 Polyphosphate kinase C-terminal domain 349 696 5.0E-150 T 31-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 27 698 7.5E-280 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 SUPERFAMILY SSF56024 336 511 9.73E-57 T 31-10-2018 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 Pfam PF13089 Polyphosphate kinase N-terminal domain 27 131 2.4E-30 T 31-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 PIRSF PIRSF015589 7 700 2.3E-263 T 31-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 SUPERFAMILY SSF140356 24 126 6.54E-34 T 31-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 BRM88_19585 aa6b388f2611bc6da49b01d9d8c78bcd 700 SUPERFAMILY SSF143724 130 335 3.53E-58 T 31-10-2018 BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 Gene3D G3DSA:2.140.10.30 91 487 6.3E-90 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 SUPERFAMILY SSF82171 61 494 4.84E-37 T 31-10-2018 BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 Gene3D G3DSA:3.40.50.1820 499 755 6.0E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 118 471 1.1E-70 T 31-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 SUPERFAMILY SSF53474 502 757 2.36E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21550 cbfaeebfb441fc3301225637603bf931 774 Pfam PF00326 Prolyl oligopeptidase family 561 757 7.2E-48 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_04475 c34b229d55bc61212f1b9089ec4ca26e 319 Pfam PF13177 DNA polymerase III, delta subunit 9 170 6.0E-33 T 31-10-2018 BRM88_04475 c34b229d55bc61212f1b9089ec4ca26e 319 Gene3D G3DSA:3.40.50.300 4 171 3.0E-43 T 31-10-2018 BRM88_04475 c34b229d55bc61212f1b9089ec4ca26e 319 SUPERFAMILY SSF52540 7 210 1.46E-38 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01275 26f2d03107ad0e23de3bbdde7a072429 108 Gene3D G3DSA:2.60.120.10 48 108 2.4E-9 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_01275 26f2d03107ad0e23de3bbdde7a072429 108 Pfam PF07883 Cupin domain 58 103 1.4E-7 T 31-10-2018 IPR013096 Cupin 2, conserved barrel BRM88_01275 26f2d03107ad0e23de3bbdde7a072429 108 SUPERFAMILY SSF51182 39 106 2.89E-9 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_22205 2695cc80a23e974fe74e83a78e80b4cd 265 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 31-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 BRM88_22205 2695cc80a23e974fe74e83a78e80b4cd 265 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 262 35.865 T 31-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BRM88_22205 2695cc80a23e974fe74e83a78e80b4cd 265 Gene3D G3DSA:3.20.20.70 1 265 2.1E-101 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_22205 2695cc80a23e974fe74e83a78e80b4cd 265 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 260 1.2E-93 T 31-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BRM88_22205 2695cc80a23e974fe74e83a78e80b4cd 265 SUPERFAMILY SSF51366 12 262 4.47E-89 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_07190 261e6ee91f05378570f39e8922b02071 254 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 242 2.1E-110 T 31-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 BRM88_07190 261e6ee91f05378570f39e8922b02071 254 SMART SM00382 26 230 7.2E-4 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_07190 261e6ee91f05378570f39e8922b02071 254 SUPERFAMILY SSF52540 2 243 3.19E-41 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07190 261e6ee91f05378570f39e8922b02071 254 Gene3D G3DSA:3.40.50.300 1 248 3.1E-59 T 31-10-2018 BRM88_07190 261e6ee91f05378570f39e8922b02071 254 Pfam PF00005 ABC transporter 17 172 1.3E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 12 860 1.4E-303 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Gene3D G3DSA:3.30.54.20 630 683 6.7E-50 T 31-10-2018 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Gene3D G3DSA:2.40.30.130 468 569 1.8E-7 T 31-10-2018 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 SUPERFAMILY SSF101353 258 447 5.23E-59 T 31-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 659 702 1.7E-17 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 SUPERFAMILY SSF50447 458 554 6.06E-17 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 SUPERFAMILY SSF55186 558 716 3.4E-53 T 31-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 881 194.175 T 31-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Pfam PF01411 tRNA synthetases class II (A) 11 561 5.1E-213 T 31-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Gene3D G3DSA:3.30.980.10 570 703 6.7E-50 T 31-10-2018 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 211 222 4.0E-32 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 238 251 4.0E-32 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 284 300 4.0E-32 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 308 321 4.0E-32 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 PRINTS PR00980 Alanyl-tRNA synthetase signature 80 91 4.0E-32 T 31-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 SMART SM00863 659 702 5.2E-22 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Gene3D G3DSA:3.30.930.10 6 254 2.1E-117 T 31-10-2018 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Gene3D G3DSA:3.10.310.40 771 877 7.7E-26 T 31-10-2018 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 Pfam PF02272 DHHA1 domain 738 871 6.9E-24 T 31-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BRM88_15670 1eab1b3400959cafb68d66eee7e69fbf 882 SUPERFAMILY SSF55681 7 257 1.04E-105 T 31-10-2018 BRM88_22680 8adde4837cb851401485a6435dc0cf2b 143 Pfam PF13581 Histidine kinase-like ATPase domain 9 130 7.3E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_22680 8adde4837cb851401485a6435dc0cf2b 143 Gene3D G3DSA:3.30.565.10 2 135 6.2E-21 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_22680 8adde4837cb851401485a6435dc0cf2b 143 SUPERFAMILY SSF55874 35 127 3.81E-8 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_15730 e0a27129ad75a300ca429d441f2c0ecd 210 Gene3D G3DSA:3.40.50.150 26 209 3.1E-53 T 31-10-2018 BRM88_15730 e0a27129ad75a300ca429d441f2c0ecd 210 PIRSF PIRSF005461 1 210 1.7E-70 T 31-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 BRM88_15730 e0a27129ad75a300ca429d441f2c0ecd 210 SUPERFAMILY SSF53335 28 204 2.09E-39 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_15730 e0a27129ad75a300ca429d441f2c0ecd 210 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 13 206 27.857 T 31-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 BRM88_15730 e0a27129ad75a300ca429d441f2c0ecd 210 Pfam PF01728 FtsJ-like methyltransferase 30 204 1.1E-49 T 31-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Pfam PF03466 LysR substrate binding domain 190 398 3.1E-30 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Gene3D G3DSA:1.10.10.10 8 94 3.5E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Gene3D G3DSA:3.40.190.10 195 386 2.3E-50 T 31-10-2018 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Gene3D G3DSA:3.40.190.10 269 370 2.3E-50 T 31-10-2018 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 SUPERFAMILY SSF53850 191 402 3.62E-36 T 31-10-2018 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Gene3D G3DSA:1.10.10.10 104 192 1.6E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 SUPERFAMILY SSF46785 6 97 8.16E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 SUPERFAMILY SSF46785 102 214 2.54E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 3.0E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 3.0E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 3.0E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.8E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_24260 c4f7162024cc65bc7a0480069e0cfb75 435 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 107 162 7.4E-12 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_10535 eefb3a24856404b76a6895eb7f434068 131 Pfam PF04355 SmpA / OmlA family 28 98 6.5E-22 T 31-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 BRM88_10535 eefb3a24856404b76a6895eb7f434068 131 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 118 31.094 T 31-10-2018 IPR026592 Outer membrane protein assembly factor BamE BRM88_10535 eefb3a24856404b76a6895eb7f434068 131 Gene3D G3DSA:3.30.1450.10 34 110 3.0E-29 T 31-10-2018 IPR037873 BamE-like BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 SUPERFAMILY SSF49493 137 212 4.19E-11 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 Pfam PF00226 DnaJ domain 5 66 4.6E-24 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 PRINTS PR00625 DnaJ domain signature 41 61 5.8E-22 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 PRINTS PR00625 DnaJ domain signature 25 40 5.8E-22 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 PRINTS PR00625 DnaJ domain signature 61 80 5.8E-22 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 PRINTS PR00625 DnaJ domain signature 7 25 5.8E-22 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 Gene3D G3DSA:2.60.260.20 199 276 2.0E-24 T 31-10-2018 BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 Gene3D G3DSA:2.60.260.20 138 198 2.0E-13 T 31-10-2018 BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 SUPERFAMILY SSF46565 1 106 1.57E-30 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 SMART SM00271 4 61 3.1E-26 T 31-10-2018 IPR001623 DnaJ domain BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 Pfam PF01556 DnaJ C terminal domain 143 276 3.2E-24 T 31-10-2018 IPR002939 Chaperone DnaJ, C-terminal BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 SUPERFAMILY SSF49493 205 287 9.03E-16 T 31-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 31-10-2018 IPR018253 DnaJ domain, conserved site BRM88_04620 91ad09b7fc6108071ee4966ecb4703ee 299 Gene3D G3DSA:1.10.287.110 2 124 6.1E-33 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Gene3D G3DSA:3.30.830.10 514 725 2.0E-42 T 31-10-2018 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Pfam PF00675 Insulinase (Peptidase family M16) 50 187 2.2E-15 T 31-10-2018 IPR011765 Peptidase M16, N-terminal BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Pfam PF00675 Insulinase (Peptidase family M16) 523 644 2.2E-6 T 31-10-2018 IPR011765 Peptidase M16, N-terminal BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 SUPERFAMILY SSF63411 499 728 4.02E-43 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Gene3D G3DSA:3.30.830.10 262 461 2.0E-36 T 31-10-2018 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Pfam PF05193 Peptidase M16 inactive domain 207 380 7.1E-29 T 31-10-2018 IPR007863 Peptidase M16, C-terminal BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Pfam PF05193 Peptidase M16 inactive domain 678 858 2.7E-29 T 31-10-2018 IPR007863 Peptidase M16, C-terminal BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 SUPERFAMILY SSF63411 35 252 1.92E-50 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 SUPERFAMILY SSF63411 267 457 8.83E-30 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 SUPERFAMILY SSF63411 739 930 2.5E-30 T 31-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Gene3D G3DSA:3.30.830.10 36 258 2.1E-62 T 31-10-2018 BRM88_21435 0bcb8628727588ff1ca0f7f30fa46798 956 Gene3D G3DSA:3.30.830.10 735 933 6.8E-38 T 31-10-2018 BRM88_20750 8edb5c5884fc099b80f94a6e7f4ca684 329 Pfam PF05598 Transposase domain (DUF772) 52 126 5.1E-20 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20750 8edb5c5884fc099b80f94a6e7f4ca684 329 Pfam PF01609 Transposase DDE domain 138 313 2.4E-31 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 SUPERFAMILY SSF52540 227 504 6.59E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 7 717 3.9E-171 T 31-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Gene3D G3DSA:3.40.50.300 285 482 2.6E-45 T 31-10-2018 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Gene3D G3DSA:3.40.50.300 483 728 2.7E-43 T 31-10-2018 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Pfam PF04851 Type III restriction enzyme, res subunit 288 464 1.2E-13 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 4 211 1.3E-40 T 31-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Pfam PF11867 Domain of unknown function (DUF3387) 716 1054 1.9E-121 T 31-10-2018 IPR021810 Protein of unknown function DUF3387 BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 SMART SM00487 263 497 4.3E-4 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_18405 01500a89cf8831ca3d6d7261f7efbb2a 1059 Gene3D G3DSA:3.90.1570.50 107 259 2.4E-24 T 31-10-2018 BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 2.9E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 2.9E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 2.9E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.2E-36 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 253 4.2E-62 T 31-10-2018 BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 Gene3D G3DSA:3.40.50.720 1 255 6.0E-81 T 31-10-2018 BRM88_02940 abd18d2cb66218ce3ff26c30dfb680b0 258 SUPERFAMILY SSF51735 9 255 5.35E-80 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_09535 541306c498541e5b9d26102a5e1d8208 189 Pfam PF04264 YceI-like domain 47 184 4.1E-24 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_09535 541306c498541e5b9d26102a5e1d8208 189 SMART SM00867 29 187 3.6E-38 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_09535 541306c498541e5b9d26102a5e1d8208 189 Gene3D G3DSA:2.40.128.110 48 189 2.5E-30 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_09535 541306c498541e5b9d26102a5e1d8208 189 SUPERFAMILY SSF101874 31 187 1.26E-33 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.306 T 31-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 SUPERFAMILY SSF54843 1 108 3.66E-41 T 31-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 Gene3D G3DSA:3.90.470.10 1 111 6.9E-45 T 31-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 3.1E-45 T 31-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 Pfam PF00237 Ribosomal protein L22p/L17e 6 107 1.3E-35 T 31-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BRM88_19090 b7cb114e44536a6d89373fd272f9a968 111 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 31-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 75 86 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 48 57 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 100 108 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 170 183 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 120 132 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00097 Anthranilate synthase component II signature 3 17 3.0E-36 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 Gene3D G3DSA:3.40.50.880 1 193 1.3E-62 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 193 2.6E-79 T 31-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 4.5E-5 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 4.5E-5 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 170 183 7.5E-14 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 7.5E-14 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 7.5E-14 T 31-10-2018 BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 SUPERFAMILY SSF52317 1 192 1.74E-54 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_22225 0b56cb0fd420d651c9fd696d4a4a0375 193 Pfam PF00117 Glutamine amidotransferase class-I 5 191 8.5E-55 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_04745 5389b4563969483d69ebe84d477c12fb 215 Gene3D G3DSA:3.20.19.10 1 184 6.7E-78 T 31-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BRM88_04745 5389b4563969483d69ebe84d477c12fb 215 Pfam PF00694 Aconitase C-terminal domain 1 132 2.3E-38 T 31-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BRM88_04745 5389b4563969483d69ebe84d477c12fb 215 SUPERFAMILY SSF52016 1 201 8.04E-64 T 31-10-2018 BRM88_04745 5389b4563969483d69ebe84d477c12fb 215 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 44.643 T 31-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BRM88_04745 5389b4563969483d69ebe84d477c12fb 215 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 1.9E-89 T 31-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 31-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 13.714 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 SUPERFAMILY SSF57829 1 53 2.56E-19 T 31-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 1.6E-23 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 Pfam PF00471 Ribosomal protein L33 8 53 1.5E-17 T 31-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24225 03d13ecc61da0d59ac926b058146d839 55 Gene3D G3DSA:2.20.28.120 1 55 8.0E-27 T 31-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 SUPERFAMILY SSF52540 161 406 1.66E-73 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Gene3D G3DSA:2.40.50.920 31 109 1.1E-6 T 31-10-2018 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 3.9E-46 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Gene3D G3DSA:1.10.8.60 337 414 3.7E-29 T 31-10-2018 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Pfam PF01434 Peptidase family M41 397 606 1.9E-81 T 31-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 SUPERFAMILY SSF140990 418 617 1.2E-75 T 31-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Gene3D G3DSA:1.20.58.760 417 614 2.0E-73 T 31-10-2018 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Gene3D G3DSA:3.40.50.300 157 335 3.2E-70 T 31-10-2018 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 SMART SM00382 199 338 1.6E-26 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_15725 af636bb6c7e541aab628655bfce25739 648 ProSitePatterns PS00674 AAA-protein family signature. 306 324 - T 31-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 8 629 37.447 T 31-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 114 608 5.5E-240 T 31-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BRM88_15725 af636bb6c7e541aab628655bfce25739 648 Pfam PF06480 FtsH Extracellular 10 102 1.5E-10 T 31-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 Gene3D G3DSA:3.40.800.10 7 304 2.0E-95 T 31-10-2018 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 SUPERFAMILY SSF52768 8 302 8.82E-90 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PIRSF PIRSF036979 2 303 7.9E-34 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 ProSitePatterns PS01053 Arginase family signature. 229 250 - T 31-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 TIGRFAM TIGR01229 rocF_arginase: arginase 9 303 3.0E-88 T 31-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 Pfam PF00491 Arginase family 8 299 9.6E-76 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PRINTS PR00116 Arginase signature 97 112 4.4E-45 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PRINTS PR00116 Arginase signature 261 275 4.4E-45 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PRINTS PR00116 Arginase signature 226 255 4.4E-45 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PRINTS PR00116 Arginase signature 124 151 4.4E-45 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_02130 437b09e913c96fd07cfcd2e250c75093 307 PRINTS PR00116 Arginase signature 178 196 4.4E-45 T 31-10-2018 IPR006035 Ureohydrolase GO:0046872 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 SUPERFAMILY SSF52540 374 572 1.71E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 Gene3D G3DSA:1.20.1560.10 10 344 2.1E-33 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 Pfam PF00005 ABC transporter 389 526 2.6E-25 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 Gene3D G3DSA:3.40.50.300 365 578 3.6E-60 T 31-10-2018 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 SUPERFAMILY SSF90123 30 346 4.45E-40 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 Pfam PF00664 ABC transporter transmembrane region 44 289 3.6E-18 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 SMART SM00382 397 572 4.2E-18 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 41 568 1.1E-148 T 31-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 BRM88_13980 3b5ed78fbe78df5657d64ccfe0171e55 578 ProSitePatterns PS00211 ABC transporters family signature. 498 512 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 Gene3D G3DSA:1.10.357.10 3 209 2.8E-61 T 31-10-2018 BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 SUPERFAMILY SSF48498 83 207 1.42E-29 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 56 - T 31-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.7E-14 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 7.3E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 7.3E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_13355 fe7c5a46cfae7bee19d1419afd3d45a8 210 SUPERFAMILY SSF46689 8 76 2.62E-18 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Pfam PF07724 AAA domain (Cdc48 subfamily) 489 650 8.2E-46 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Gene3D G3DSA:1.10.8.60 359 441 9.1E-32 T 31-10-2018 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 214 315 1.5E-10 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SUPERFAMILY SSF81923 1 141 1.07E-56 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SMART SM01086 656 745 1.3E-32 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 2.2E-12 T 31-10-2018 IPR004176 Clp, N-terminal BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SUPERFAMILY SSF52540 440 745 2.68E-74 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 494 512 1.5E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 598 612 1.5E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 536 554 1.5E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 565 583 1.5E-37 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 305 317 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 737 0.0 T 31-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Gene3D G3DSA:1.10.8.60 656 753 4.5E-28 T 31-10-2018 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Gene3D G3DSA:3.40.50.300 169 358 6.3E-63 T 31-10-2018 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SMART SM00382 490 626 2.7E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SMART SM00382 209 354 8.2E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Gene3D G3DSA:1.10.1780.10 1 142 3.4E-39 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 656 736 3.1E-22 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 SUPERFAMILY SSF52540 171 433 1.45E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 Gene3D G3DSA:3.40.50.300 442 654 2.3E-74 T 31-10-2018 BRM88_13445 73db0ef8f6155805e271f2c30f4aa336 760 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 521 539 - T 31-10-2018 IPR028299 ClpA/B, conserved site 2 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 Gene3D G3DSA:3.40.50.300 6 339 1.2E-72 T 31-10-2018 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 Gene3D G3DSA:1.20.1050.90 124 303 1.2E-72 T 31-10-2018 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 339 7.9E-74 T 31-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 SUPERFAMILY SSF52540 1 337 1.74E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 ProSitePatterns PS00617 RecF protein signature 1. 121 141 - T 31-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 ProSitePatterns PS00618 RecF protein signature 2. 304 322 - T 31-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 368 82.703 T 31-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BRM88_00020 9e87a94040ca1bcb0491a3d589a2e062 368 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 338 2.2E-16 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 SUPERFAMILY SSF47781 66 134 1.71E-20 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Pfam PF01330 RuvA N terminal domain 1 62 2.3E-19 T 31-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 193 4.8E-48 T 31-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 193 30.006 T 31-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Gene3D G3DSA:2.40.50.140 1 65 9.3E-25 T 31-10-2018 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 SMART SM00278 108 127 0.089 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 SMART SM00278 73 92 8.8 T 31-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.1E-17 T 31-10-2018 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Gene3D G3DSA:1.10.150.20 67 138 5.3E-25 T 31-10-2018 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 SUPERFAMILY SSF46929 147 191 2.62E-7 T 31-10-2018 IPR036267 RuvA, C-terminal domain superfamily BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Pfam PF07499 RuvA, C-terminal domain 148 191 1.9E-7 T 31-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 Gene3D G3DSA:1.10.8.10 147 193 4.0E-11 T 31-10-2018 BRM88_08590 b1188607fd956ca8a68f971e0625154d 194 SUPERFAMILY SSF50249 1 63 1.48E-17 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_18635 7405c2a99a08f7f63cfc9cc131efe23e 202 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 20 172 2.6E-28 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN BRM88_18635 7405c2a99a08f7f63cfc9cc131efe23e 202 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 12 174 1.3E-27 T 31-10-2018 IPR017734 Type VI secretion system, lipoprotein SciN BRM88_18635 7405c2a99a08f7f63cfc9cc131efe23e 202 Gene3D G3DSA:2.60.40.4150 51 181 2.4E-31 T 31-10-2018 IPR038706 Type VI secretion protein SciN-like superfamily BRM88_10700 98046aea3bf33903ee9372077405f740 467 Pfam PF00206 Lyase 13 337 2.2E-98 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00145 Argininosuccinate lyase family signature 312 328 4.2E-6 T 31-10-2018 BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 4.2E-6 T 31-10-2018 BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00145 Argininosuccinate lyase family signature 128 150 4.2E-6 T 31-10-2018 BRM88_10700 98046aea3bf33903ee9372077405f740 467 Pfam PF10415 Fumarase C C-terminus 403 456 6.3E-19 T 31-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_10700 98046aea3bf33903ee9372077405f740 467 Gene3D G3DSA:1.20.200.10 134 400 1.2E-101 T 31-10-2018 BRM88_10700 98046aea3bf33903ee9372077405f740 467 SUPERFAMILY SSF48557 5 455 1.77E-141 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 BRM88_10700 98046aea3bf33903ee9372077405f740 467 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 457 78.378 T 31-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_10700 98046aea3bf33903ee9372077405f740 467 ProSitePatterns PS00163 Fumarate lyases signature. 312 321 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 1.7E-32 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00149 Fumarate lyase superfamily signature 266 293 1.7E-32 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00149 Fumarate lyase superfamily signature 312 328 1.7E-32 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10700 98046aea3bf33903ee9372077405f740 467 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 1.7E-32 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_10700 98046aea3bf33903ee9372077405f740 467 Gene3D G3DSA:1.10.40.30 403 454 8.0E-18 T 31-10-2018 BRM88_10700 98046aea3bf33903ee9372077405f740 467 Gene3D G3DSA:1.10.275.10 6 133 1.6E-50 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal BRM88_13630 5057d38ac528231512f04019ba292e34 369 PIRSF PIRSF000390 1 368 1.2E-101 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BRM88_13630 5057d38ac528231512f04019ba292e34 369 SUPERFAMILY SSF53383 2 364 2.62E-96 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_13630 5057d38ac528231512f04019ba292e34 369 Gene3D G3DSA:3.40.640.10 2 367 1.8E-101 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_13630 5057d38ac528231512f04019ba292e34 369 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 362 6.5E-98 T 31-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BRM88_21795 85a9c4d238de2615bf1ef345918ce959 325 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 13 323 5.0E-20 T 31-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX BRM88_03575 b5dc1d0ebe04ac3baef100c10cea4d08 266 PIRSF PIRSF002854 1 266 4.9E-102 T 31-10-2018 IPR004872 Lipoprotein NlpA family BRM88_03575 b5dc1d0ebe04ac3baef100c10cea4d08 266 Gene3D G3DSA:3.40.190.10 30 262 3.4E-98 T 31-10-2018 BRM88_03575 b5dc1d0ebe04ac3baef100c10cea4d08 266 SUPERFAMILY SSF53850 30 266 7.65E-83 T 31-10-2018 BRM88_03575 b5dc1d0ebe04ac3baef100c10cea4d08 266 Gene3D G3DSA:3.40.190.10 112 216 3.4E-98 T 31-10-2018 BRM88_03575 b5dc1d0ebe04ac3baef100c10cea4d08 266 Pfam PF03180 NLPA lipoprotein 31 266 1.7E-97 T 31-10-2018 IPR004872 Lipoprotein NlpA family BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 ProSitePatterns PS01068 OmpA-like domain. 158 202 - T 31-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 Gene3D G3DSA:3.30.1330.60 89 232 2.0E-49 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 PRINTS PR01021 OMPA domain signature 156 171 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 PRINTS PR01021 OMPA domain signature 126 148 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 PRINTS PR01021 OMPA domain signature 171 187 2.6E-17 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 SUPERFAMILY SSF103088 113 229 5.62E-41 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 Pfam PF00691 OmpA family 125 220 1.2E-25 T 31-10-2018 IPR006665 OmpA-like domain BRM88_07900 9ec73cc7fc6a93273fbb8c948308aa7e 241 Pfam PF13488 Glycine zipper 50 95 3.1E-11 T 31-10-2018 IPR039567 Glycine zipper domain BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 Gene3D G3DSA:1.10.439.10 18 177 5.1E-43 T 31-10-2018 IPR023343 Penicillin amidase type, domain 1 GO:0016811 BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 Pfam PF01804 Penicillin amidase 46 794 2.1E-124 T 31-10-2018 IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase GO:0016787|GO:0017000 BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 Gene3D G3DSA:2.30.120.10 333 392 2.4E-107 T 31-10-2018 BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 PIRSF PIRSF001227 4 803 8.7E-137 T 31-10-2018 IPR014395 Penicillin/GL-7-ACA/AHL acylase GO:0016811 BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 Gene3D G3DSA:1.10.1400.10 564 702 2.4E-107 T 31-10-2018 BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 Gene3D G3DSA:3.60.20.10 254 786 2.4E-107 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_10405 da359a2838e7fabe4537d91aa1a09fb4 805 SUPERFAMILY SSF56235 42 803 1.44E-160 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_20035 a98dbddc92b6e26298370c807f3856a3 296 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 274 2.2E-75 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BRM88_20035 a98dbddc92b6e26298370c807f3856a3 296 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 280 19.523 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BRM88_20035 a98dbddc92b6e26298370c807f3856a3 296 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 139 151 - T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BRM88_20035 a98dbddc92b6e26298370c807f3856a3 296 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 6 277 5.6E-75 T 31-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 Gene3D G3DSA:3.30.420.40 1 249 2.8E-68 T 31-10-2018 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 SUPERFAMILY SSF53067 1 248 1.85E-54 T 31-10-2018 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 352 373 - T 31-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 SUPERFAMILY SSF53067 252 494 2.5E-53 T 31-10-2018 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 258 441 2.3E-31 T 31-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 PIRSF PIRSF000538 1 497 4.6E-111 T 31-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 248 3.8E-55 T 31-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 Gene3D G3DSA:3.30.420.40 252 490 8.3E-68 T 31-10-2018 BRM88_15495 d6ba31fc73908c98424efdab64d33809 497 TIGRFAM TIGR01312 XylB: xylulokinase 5 487 4.9E-158 T 31-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 BRM88_02380 14bee6abb2c0170c10274c0d81984530 347 SUPERFAMILY SSF47240 22 347 1.88E-85 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_02380 14bee6abb2c0170c10274c0d81984530 347 Pfam PF00268 Ribonucleotide reductase, small chain 32 305 4.3E-68 T 31-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02380 14bee6abb2c0170c10274c0d81984530 347 Gene3D G3DSA:1.10.620.20 27 318 2.1E-78 T 31-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 BRM88_02380 14bee6abb2c0170c10274c0d81984530 347 PIRSF PIRSF000355 3 347 2.7E-112 T 31-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02785 8ab0b30320609d0c8360898f0f2d040e 125 Gene3D G3DSA:1.10.260.40 2 66 2.0E-15 T 31-10-2018 BRM88_02785 8ab0b30320609d0c8360898f0f2d040e 125 SMART SM00530 7 63 2.2E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_02785 8ab0b30320609d0c8360898f0f2d040e 125 Pfam PF01381 Helix-turn-helix 9 55 7.1E-9 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_02785 8ab0b30320609d0c8360898f0f2d040e 125 SUPERFAMILY SSF47413 3 66 7.17E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 Pfam PF13419 Haloacid dehalogenase-like hydrolase 48 199 8.6E-13 T 31-10-2018 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 142 158 1.9E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 188 201 1.9E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 1.9E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 SUPERFAMILY SSF56784 5 228 2.95E-45 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 Gene3D G3DSA:3.40.50.1000 6 220 1.1E-60 T 31-10-2018 IPR023214 HAD superfamily BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 Gene3D G3DSA:1.20.120.1600 19 102 1.1E-60 T 31-10-2018 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 81 199 4.0E-8 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_02225 a5facdc598e0ac1b475a74ea2c56cf4e 245 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 88 193 1.0E-13 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 Gene3D G3DSA:1.20.210.10 30 565 2.8E-192 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.3E-97 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 SUPERFAMILY SSF81442 43 559 6.67E-182 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 1.1E-139 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08440 8d916ca965a149a6c5088855f1aca5ed 666 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 31-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 BRM88_11335 dc4ec5a7f0b5ecee934dcaaee389ac28 294 Gene3D G3DSA:3.60.110.10 2 292 9.8E-97 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_11335 dc4ec5a7f0b5ecee934dcaaee389ac28 294 Pfam PF00795 Carbon-nitrogen hydrolase 8 271 3.9E-56 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BRM88_11335 dc4ec5a7f0b5ecee934dcaaee389ac28 294 SUPERFAMILY SSF56317 6 291 3.53E-87 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 3.3E-20 T 31-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 SMART SM01409 8 62 7.7E-16 T 31-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 Pfam PF01192 RNA polymerase Rpb6 8 60 1.1E-15 T 31-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 SUPERFAMILY SSF63562 1 77 1.96E-24 T 31-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 Gene3D G3DSA:3.90.940.10 1 94 3.2E-26 T 31-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BRM88_05855 9b3a390b29fa79ae7f12084abc5056f6 99 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 63 17.573 T 31-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 Gene3D G3DSA:3.30.390.10 1 126 3.2E-53 T 31-10-2018 IPR029017 Enolase-like, N-terminal BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 365 382 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 37 51 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 107 123 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 313 324 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 336 350 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PRINTS PR00148 Enolase signature 163 176 2.9E-45 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 Pfam PF03952 Enolase, N-terminal domain 4 134 3.1E-56 T 31-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 3.3E-200 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 SMART SM01192 141 427 7.1E-217 T 31-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 ProSitePatterns PS00164 Enolase signature. 336 349 - T 31-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 Gene3D G3DSA:3.20.20.120 129 430 1.6E-131 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_15800 839164319f0595794b6feeb0f138aeef 430 PIRSF PIRSF001400 1 427 7.9E-185 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 Hamap MF_00318 Enolase [eno]. 2 413 43.977 T 31-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 SMART SM01193 4 134 2.1E-89 T 31-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 SUPERFAMILY SSF54826 4 136 1.04E-53 T 31-10-2018 BRM88_15800 839164319f0595794b6feeb0f138aeef 430 SUPERFAMILY SSF51604 142 426 8.25E-126 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_15800 839164319f0595794b6feeb0f138aeef 430 Pfam PF00113 Enolase, C-terminal TIM barrel domain 142 425 3.3E-131 T 31-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BRM88_15440 4763ed0dd66bc8a2123abea5122a774c 82 SUPERFAMILY SSF50037 3 77 5.49E-14 T 31-10-2018 IPR008988 Transcriptional repressor, C-terminal BRM88_15440 4763ed0dd66bc8a2123abea5122a774c 82 Gene3D G3DSA:2.30.30.90 1 79 3.7E-24 T 31-10-2018 IPR038157 Ferrous iron transporter, core domain BRM88_15440 4763ed0dd66bc8a2123abea5122a774c 82 Pfam PF04023 FeoA domain 1 76 1.5E-17 T 31-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BRM88_15440 4763ed0dd66bc8a2123abea5122a774c 82 SMART SM00899 1 77 1.6E-17 T 31-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Pfam PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding 9 80 5.4E-6 T 31-10-2018 IPR005104 Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain GO:0003677|GO:0006355 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Gene3D G3DSA:3.30.450.40 112 340 1.8E-36 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Pfam PF01628 HrcA protein C terminal domain 111 330 8.6E-56 T 31-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 SUPERFAMILY SSF55781 78 345 4.91E-59 T 31-10-2018 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Gene3D G3DSA:1.10.10.10 1 90 4.8E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Gene3D G3DSA:3.30.390.60 134 235 1.8E-36 T 31-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 10 342 2.8E-105 T 31-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 8 337 28.056 T 31-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 PIRSF PIRSF005485 6 348 9.4E-113 T 31-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BRM88_10550 52de28c66bfc191bb31be6a14c924c12 350 SUPERFAMILY SSF46785 8 89 3.31E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 SUPERFAMILY SSF51905 16 334 6.47E-31 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 Gene3D G3DSA:3.90.660.10 56 296 3.2E-96 T 31-10-2018 BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 Gene3D G3DSA:3.50.50.60 18 331 3.2E-96 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 SUPERFAMILY SSF88633 177 293 1.77E-7 T 31-10-2018 BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 PRINTS PR00419 Adrenodoxin reductase family signature 17 39 2.3E-7 T 31-10-2018 BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 PRINTS PR00419 Adrenodoxin reductase family signature 40 53 2.3E-7 T 31-10-2018 BRM88_09720 b3ce5c3016fb89522655ef86f55942d9 344 Pfam PF13450 NAD(P)-binding Rossmann-like domain 20 82 2.7E-16 T 31-10-2018 BRM88_08165 3a2eb642e9749d70ad9ed671371a9e02 439 SUPERFAMILY SSF53098 19 403 2.12E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_08165 3a2eb642e9749d70ad9ed671371a9e02 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.2E-89 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_21205 e08becff6f136f0e1ea9b0a6a22f0274 310 Pfam PF00294 pfkB family carbohydrate kinase 36 290 7.8E-37 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB BRM88_21205 e08becff6f136f0e1ea9b0a6a22f0274 310 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 47 71 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_21205 e08becff6f136f0e1ea9b0a6a22f0274 310 Gene3D G3DSA:3.40.1190.20 1 310 7.1E-107 T 31-10-2018 IPR029056 Ribokinase-like BRM88_21205 e08becff6f136f0e1ea9b0a6a22f0274 310 SUPERFAMILY SSF53613 2 296 2.96E-63 T 31-10-2018 IPR029056 Ribokinase-like BRM88_11760 6fab013ef63ddeadadc5281e0aa2115c 244 SUPERFAMILY SSF51366 3 243 5.65E-61 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_11760 6fab013ef63ddeadadc5281e0aa2115c 244 Pfam PF00977 Histidine biosynthesis protein 5 236 4.7E-69 T 31-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BRM88_11760 6fab013ef63ddeadadc5281e0aa2115c 244 Gene3D G3DSA:3.20.20.70 4 244 6.6E-81 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_11760 6fab013ef63ddeadadc5281e0aa2115c 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 4 244 31.442 T 31-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BRM88_11760 6fab013ef63ddeadadc5281e0aa2115c 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 5 240 9.0E-74 T 31-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BRM88_02145 5b126f0d9fd6f938cd95a9455dacb454 69 Pfam PF05532 CsbD-like 4 55 1.7E-19 T 31-10-2018 IPR008462 CsbD-like domain BRM88_02145 5b126f0d9fd6f938cd95a9455dacb454 69 PIRSF PIRSF039008 1 66 6.2E-30 T 31-10-2018 IPR026042 Stress response protein YjbJ BRM88_02145 5b126f0d9fd6f938cd95a9455dacb454 69 Gene3D G3DSA:1.10.1470.10 1 65 2.5E-27 T 31-10-2018 IPR036629 YjbJ superfamily BRM88_02145 5b126f0d9fd6f938cd95a9455dacb454 69 SUPERFAMILY SSF69047 1 66 1.7E-23 T 31-10-2018 IPR036629 YjbJ superfamily BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 1034 1062 5.5E-10 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 899 930 2.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 865 896 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 696 727 4.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 933 964 4.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 628 659 4.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 323 353 3.5E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 526 557 9.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 1069 1093 0.05 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 1000 1031 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 967 997 1.2E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 390 421 3.7E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 424 455 5.3E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 797 828 4.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 730 761 4.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 764 794 4.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 492 523 1.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 662 693 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 458 489 9.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 356 387 6.4E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 560 591 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 594 625 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 289 320 4.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12025 9cff9bcf31e923963882feb16e0936de 1338 Pfam PF03377 TAL effector repeat 831 862 4.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 3 22 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 128 149 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 44 64 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 86 106 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 107 127 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 23 43 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PRINTS PR00601 Bacterioferritin signature 65 85 6.8E-69 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 2.0E-73 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 Pfam PF00210 Ferritin-like domain 8 143 1.9E-39 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 SUPERFAMILY SSF47240 1 152 1.77E-54 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 Gene3D G3DSA:1.20.1260.10 1 156 5.9E-69 T 31-10-2018 IPR012347 Ferritin-like BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_22145 33867e51bc6739a5d49a4fc893ebe1d8 156 PIRSF PIRSF002560 1 156 4.8E-71 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 SUPERFAMILY SSF69593 328 542 9.29E-29 T 31-10-2018 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 64 874 29.551 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 PIRSF PIRSF000437 72 883 0.0 T 31-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 72 870 0.0 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 SMART SM00563 358 485 8.5E-29 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 PIRSF PIRSF500064 47 885 0.0 T 31-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BRM88_01240 67d4a03467e1985702a66fdfbfca5d5d 886 Pfam PF01553 Acyltransferase 343 482 1.4E-23 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 SUPERFAMILY SSF57716 219 270 2.08E-15 T 31-10-2018 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 SMART SM01232 131 223 1.6E-45 T 31-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 43.934 T 31-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 SUPERFAMILY SSF81624 2 140 1.83E-42 T 31-10-2018 IPR035937 MutM-like, N-terminal BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 31-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 5.5E-34 T 31-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Gene3D G3DSA:1.10.8.50 133 271 7.3E-44 T 31-10-2018 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 1.4E-6 T 31-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Gene3D G3DSA:3.20.190.10 2 130 1.8E-41 T 31-10-2018 IPR035937 MutM-like, N-terminal BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 SMART SM00898 2 117 3.0E-56 T 31-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 9.7E-24 T 31-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 1.6E-87 T 31-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BRM88_01465 bad84d1dd9f5e9eb910434b6b87076c3 271 SUPERFAMILY SSF46946 132 223 1.22E-28 T 31-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BRM88_24610 aa97bd6f1ba86fdfbf12ff7c2bbdeee0 261 Pfam PF01694 Rhomboid family 58 195 1.0E-18 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BRM88_24610 aa97bd6f1ba86fdfbf12ff7c2bbdeee0 261 Gene3D G3DSA:1.20.1540.10 18 201 5.6E-17 T 31-10-2018 IPR035952 Rhomboid-like superfamily BRM88_24610 aa97bd6f1ba86fdfbf12ff7c2bbdeee0 261 SUPERFAMILY SSF144091 18 198 8.11E-27 T 31-10-2018 BRM88_13230 100457cf49d844314311f519bbd399b8 634 Gene3D G3DSA:1.20.120.790 498 631 3.2E-40 T 31-10-2018 IPR037196 HSP90, C-terminal domain BRM88_13230 100457cf49d844314311f519bbd399b8 634 PIRSF PIRSF002583 2 634 2.5E-205 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BRM88_13230 100457cf49d844314311f519bbd399b8 634 SUPERFAMILY SSF54211 236 491 9.1E-94 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_13230 100457cf49d844314311f519bbd399b8 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 185 2.1E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13230 100457cf49d844314311f519bbd399b8 634 Pfam PF00183 Hsp90 protein 228 629 9.1E-126 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BRM88_13230 100457cf49d844314311f519bbd399b8 634 Gene3D G3DSA:3.30.230.80 235 402 5.4E-67 T 31-10-2018 BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 29 51 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 175 192 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 78 95 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 123 145 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 193 211 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 8 28 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 PRINTS PR00775 90kDa heat shock protein signature 96 113 9.6E-58 T 31-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BRM88_13230 100457cf49d844314311f519bbd399b8 634 SMART SM00387 30 187 7.3E-10 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13230 100457cf49d844314311f519bbd399b8 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 31-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 BRM88_13230 100457cf49d844314311f519bbd399b8 634 Gene3D G3DSA:3.30.565.10 1 227 1.7E-74 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13230 100457cf49d844314311f519bbd399b8 634 SUPERFAMILY SSF110942 518 630 2.22E-32 T 31-10-2018 IPR037196 HSP90, C-terminal domain BRM88_13230 100457cf49d844314311f519bbd399b8 634 Gene3D G3DSA:3.40.50.11260 403 492 1.8E-31 T 31-10-2018 BRM88_13230 100457cf49d844314311f519bbd399b8 634 SUPERFAMILY SSF55874 8 218 1.7E-63 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13230 100457cf49d844314311f519bbd399b8 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 31.802 T 31-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 31-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 Gene3D G3DSA:3.40.430.10 1 164 1.7E-49 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 SUPERFAMILY SSF53597 1 164 1.19E-48 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 PIRSF PIRSF000194 1 164 1.0E-53 T 31-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 PRINTS PR00070 Dihydrofolate reductase signature 28 36 5.6E-12 T 31-10-2018 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 PRINTS PR00070 Dihydrofolate reductase signature 14 24 5.6E-12 T 31-10-2018 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 PRINTS PR00070 Dihydrofolate reductase signature 41 52 5.6E-12 T 31-10-2018 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 PRINTS PR00070 Dihydrofolate reductase signature 94 108 5.6E-12 T 31-10-2018 BRM88_20020 2a0bac9999da805e86c4c08e18e288cf 164 Pfam PF00186 Dihydrofolate reductase 3 163 5.1E-51 T 31-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 BRM88_10790 b1aab1e36bc197af53d0e88409a31e5b 401 Gene3D G3DSA:1.50.10.10 9 400 6.3E-164 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_10790 b1aab1e36bc197af53d0e88409a31e5b 401 SUPERFAMILY SSF48208 12 398 1.21E-120 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_10790 b1aab1e36bc197af53d0e88409a31e5b 401 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 39 389 3.3E-125 T 31-10-2018 BRM88_01665 3097b0e99556fa0842abc240a06f9f3c 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01665 3097b0e99556fa0842abc240a06f9f3c 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01665 3097b0e99556fa0842abc240a06f9f3c 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 SMART SM00934 13 230 8.1E-71 T 31-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 14 231 1.8E-65 T 31-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 Gene3D G3DSA:3.20.20.70 9 235 1.2E-67 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 66 79 - T 31-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 11 235 31.996 T 31-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 13 229 2.0E-38 T 31-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_01205 0dd54162db3fc4e462029af29ba4f30f 243 SUPERFAMILY SSF51366 12 234 6.91E-60 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_03495 e99a1127f70b54480da539eb40ca4c2d 445 Pfam PF07995 Glucose / Sorbosone dehydrogenase 197 369 1.0E-12 T 31-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase BRM88_03495 e99a1127f70b54480da539eb40ca4c2d 445 SUPERFAMILY SSF50952 69 443 4.05E-33 T 31-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BRM88_03495 e99a1127f70b54480da539eb40ca4c2d 445 Gene3D G3DSA:2.120.10.30 171 443 1.3E-17 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 ProSitePatterns PS00211 ABC transporters family signature. 451 465 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Pfam PF00005 ABC transporter 17 178 1.4E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 SUPERFAMILY SSF52540 343 528 3.17E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 SMART SM00382 26 223 5.9E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 SMART SM00382 357 531 3.7E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Pfam PF16326 ABC transporter C-terminal domain 576 634 1.4E-9 T 31-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Pfam PF12848 ABC transporter 217 297 8.8E-23 T 31-10-2018 IPR032781 ABC-transporter extension domain BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Pfam PF00005 ABC transporter 348 479 2.4E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 SUPERFAMILY SSF52540 2 239 9.69E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Gene3D G3DSA:3.40.50.300 1 259 1.8E-58 T 31-10-2018 BRM88_07020 4110eec75328c548aa8bb038f8cea11e 638 Gene3D G3DSA:3.40.50.300 276 556 2.3E-46 T 31-10-2018 BRM88_12885 b767e5a6f6d037f0d070919bf071de48 318 Pfam PF06189 5'-nucleotidase 39 316 1.8E-106 T 31-10-2018 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821|Reactome: R-HSA-74259 BRM88_15965 54440f58f6702d9d7302dfcb52ff4bea 316 Pfam PF00535 Glycosyl transferase family 2 17 130 1.8E-20 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_15965 54440f58f6702d9d7302dfcb52ff4bea 316 SUPERFAMILY SSF53448 16 297 9.38E-48 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_15965 54440f58f6702d9d7302dfcb52ff4bea 316 Gene3D G3DSA:3.90.550.10 1 252 3.3E-49 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_19480 5073248acacefea893070f9f91100ffc 313 Gene3D G3DSA:1.10.10.10 1 85 5.9E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19480 5073248acacefea893070f9f91100ffc 313 Gene3D G3DSA:3.40.190.10 161 262 8.5E-70 T 31-10-2018 BRM88_19480 5073248acacefea893070f9f91100ffc 313 Pfam PF03466 LysR substrate binding domain 87 289 4.7E-49 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_19480 5073248acacefea893070f9f91100ffc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19480 5073248acacefea893070f9f91100ffc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19480 5073248acacefea893070f9f91100ffc 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-7 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_19480 5073248acacefea893070f9f91100ffc 313 SUPERFAMILY SSF53850 88 295 5.89E-46 T 31-10-2018 BRM88_19480 5073248acacefea893070f9f91100ffc 313 SUPERFAMILY SSF46785 1 111 1.84E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_19480 5073248acacefea893070f9f91100ffc 313 Gene3D G3DSA:3.40.190.10 91 291 8.5E-70 T 31-10-2018 BRM88_19480 5073248acacefea893070f9f91100ffc 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-21 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_03830 f20aa7d1bf72ea971da28b531911fd96 111 Pfam PF09361 Phasin protein 8 95 7.1E-7 T 31-10-2018 IPR018968 Phasin BRM88_13580 536b150d077e89ebf56d78e466a0125a 401 SUPERFAMILY SSF64518 1 401 4.45E-75 T 31-10-2018 BRM88_13580 536b150d077e89ebf56d78e466a0125a 401 Pfam PF00700 Bacterial flagellin C-terminal helical region 318 400 3.5E-5 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BRM88_13580 536b150d077e89ebf56d78e466a0125a 401 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 400 9.3E-109 T 31-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 BRM88_13580 536b150d077e89ebf56d78e466a0125a 401 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 5.7E-21 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BRM88_13580 536b150d077e89ebf56d78e466a0125a 401 Gene3D G3DSA:1.20.1330.10 42 216 2.1E-47 T 31-10-2018 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 Pfam PF02321 Outer membrane efflux protein 86 272 2.2E-11 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 Pfam PF02321 Outer membrane efflux protein 303 478 2.2E-23 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 Gene3D G3DSA:2.20.200.10 121 372 5.7E-86 T 31-10-2018 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 Gene3D G3DSA:1.20.1600.10 79 480 5.7E-86 T 31-10-2018 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 SUPERFAMILY SSF56954 6 480 4.58E-74 T 31-10-2018 BRM88_08065 c2ad332baf68c490d37b2a5948195ae5 489 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 480 4.0E-74 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 639 0.1 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 698 8.8E-6 T 31-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Gene3D G3DSA:2.120.10.90 499 717 5.0E-14 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 SUPERFAMILY SSF56719 35 487 3.53E-151 T 31-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Gene3D G3DSA:3.90.199.10 36 485 5.3E-172 T 31-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 472 7.6E-133 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 SMART SM00434 15 465 5.4E-220 T 31-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 745 33.711 T 31-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 13 743 0.0 T 31-10-2018 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 SUPERFAMILY SSF101904 501 743 6.54E-46 T 31-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Gene3D G3DSA:3.30.1360.40 242 335 5.3E-172 T 31-10-2018 BRM88_10420 7ed82e1ffb673f0060efb0512772d0d1 747 Gene3D G3DSA:1.10.268.10 373 458 5.3E-172 T 31-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SUPERFAMILY SSF47384 502 582 2.94E-12 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Pfam PF02743 Cache domain 45 191 5.1E-12 T 31-10-2018 IPR033479 Double Cache domain 1 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SMART SM00448 761 873 8.6E-14 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:3.30.450.20 46 287 2.0E-70 T 31-10-2018 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 517 581 2.1E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SMART SM00387 625 735 7.7E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Pfam PF00072 Response regulator receiver domain 763 873 7.6E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:1.10.287.130 483 579 1.9E-15 T 31-10-2018 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:3.40.50.2300 758 881 5.4E-19 T 31-10-2018 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SUPERFAMILY SSF55874 570 733 3.41E-37 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SUPERFAMILY SSF52172 759 877 6.55E-22 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 626 734 5.0E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 695 713 3.6E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 719 732 3.6E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 679 689 3.6E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 675 3.6E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:3.30.565.10 585 732 6.0E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SUPERFAMILY SSF55785 368 467 5.82E-7 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:3.30.450.20 59 181 2.0E-70 T 31-10-2018 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SUPERFAMILY SSF103190 54 191 6.54E-13 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 SMART SM00388 516 581 1.3E-11 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Gene3D G3DSA:3.30.450.20 355 482 4.0E-11 T 31-10-2018 BRM88_05670 374bd2e2a2703b61c76a38a9d7f4c6d1 881 Pfam PF12860 PAS fold 369 482 3.5E-40 T 31-10-2018 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 SMART SM00984 323 423 1.3E-34 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 PIRSF PIRSF000124 12 429 2.4E-50 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 323 421 3.4E-19 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 PIRSF PIRSF500136 4 430 7.9E-146 T 31-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 Gene3D G3DSA:3.40.50.720 207 429 4.7E-55 T 31-10-2018 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 Gene3D G3DSA:3.40.50.720 5 202 5.7E-58 T 31-10-2018 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 13 418 1.3E-111 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 208 296 1.7E-24 T 31-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 SUPERFAMILY SSF48179 207 297 1.29E-25 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 SUPERFAMILY SSF52413 313 425 4.97E-25 T 31-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 13 186 9.4E-31 T 31-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_16480 f02545077e50c55c56c9cfe900e2e591 430 SUPERFAMILY SSF51735 13 197 5.47E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_05750 e705cb2eefa53d4ec68acfc79e06b6f7 156 Pfam PF01878 EVE domain 6 153 2.3E-54 T 31-10-2018 IPR002740 EVE domain BRM88_05750 e705cb2eefa53d4ec68acfc79e06b6f7 156 Gene3D G3DSA:3.10.590.10 1 156 1.2E-64 T 31-10-2018 BRM88_05750 e705cb2eefa53d4ec68acfc79e06b6f7 156 SUPERFAMILY SSF88697 5 155 4.64E-60 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 SMART SM00739 131 158 2.6E-5 T 31-10-2018 IPR005824 KOW BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 184 2.6E-61 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 Pfam PF02357 Transcription termination factor nusG 2 116 3.0E-22 T 31-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 ProSitePatterns PS01014 Transcription termination factor nusG signature. 168 177 - T 31-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 PRINTS PR00338 Transcription termination factor NUSG signature 161 177 8.3E-19 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 8.3E-19 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 PRINTS PR00338 Transcription termination factor NUSG signature 143 158 8.3E-19 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 185 23.008 T 31-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 Gene3D G3DSA:2.30.30.30 126 184 9.9E-25 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 SUPERFAMILY SSF50104 129 184 2.66E-18 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 SUPERFAMILY SSF82679 2 121 2.49E-35 T 31-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 SMART SM00738 1 119 5.1E-43 T 31-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 Pfam PF00467 KOW motif 134 168 3.1E-7 T 31-10-2018 IPR005824 KOW BRM88_19190 d2ce72a301cdcc8ee48e54a54daf08ca 185 Gene3D G3DSA:3.30.70.940 1 125 8.4E-42 T 31-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Gene3D G3DSA:1.10.486.10 375 530 8.3E-106 T 31-10-2018 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Pfam PF13361 UvrD-like helicase C-terminal domain 269 603 1.5E-59 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 SUPERFAMILY SSF52540 2 628 8.87E-159 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Gene3D G3DSA:1.10.10.160 106 181 6.5E-86 T 31-10-2018 IPR013986 DExx box DNA helicase domain superfamily BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 658 36.46 T 31-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Gene3D G3DSA:3.40.50.300 4 264 6.5E-86 T 31-10-2018 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Gene3D G3DSA:3.40.50.300 273 623 8.3E-106 T 31-10-2018 BRM88_01180 a866e0d3d5c4bad54e062fbc2f782977 658 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 263 9.9E-68 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BRM88_19805 3f382b803027496bdfc311091497701a 213 SUPERFAMILY SSF52833 7 87 1.45E-16 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_19805 3f382b803027496bdfc311091497701a 213 Gene3D G3DSA:3.40.30.10 6 201 1.5E-51 T 31-10-2018 BRM88_19805 3f382b803027496bdfc311091497701a 213 Pfam PF13409 Glutathione S-transferase, N-terminal domain 14 78 1.2E-10 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_19805 3f382b803027496bdfc311091497701a 213 SUPERFAMILY SSF47616 86 202 6.63E-12 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_19805 3f382b803027496bdfc311091497701a 213 Gene3D G3DSA:1.20.1050.10 85 195 1.5E-51 T 31-10-2018 BRM88_07925 d811d2ea576ef4ae997d3b0ea4b6f487 136 Pfam PF03203 MerC mercury resistance protein 11 123 1.2E-25 T 31-10-2018 IPR004891 Mercury transport protein MerC GO:0015097|GO:0015694|GO:0016020 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 - T 31-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 126 3.2E-35 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 98 3.2E-35 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 110 3.2E-35 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 3.2E-35 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 18 33 3.2E-35 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 PIRSF PIRSF001467 2 156 1.2E-55 T 31-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 Gene3D G3DSA:2.40.100.10 1 142 1.7E-60 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 SUPERFAMILY SSF50891 4 136 1.26E-57 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily BRM88_04910 385bb0c4c3dfb7015106d978bc4ba899 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 5 136 1.2E-49 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 Gene3D G3DSA:3.40.50.2300 169 295 6.0E-76 T 31-10-2018 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 Gene3D G3DSA:1.10.260.40 10 64 2.0E-22 T 31-10-2018 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 Pfam PF13377 Periplasmic binding protein-like domain 177 342 2.5E-32 T 31-10-2018 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 56 9.4E-18 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 4.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 4.9E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 SMART SM00354 10 80 4.1E-29 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 SUPERFAMILY SSF47413 11 68 3.19E-17 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 SUPERFAMILY SSF53822 70 343 1.03E-67 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_01225 7688fbbeae75dd8447481d96290bb78d 350 Gene3D G3DSA:3.40.50.2300 65 311 6.0E-76 T 31-10-2018 BRM88_02730 3734082e396d72be5314d5353e05463d 527 Pfam PF02142 MGS-like domain 20 132 1.5E-24 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain BRM88_02730 3734082e396d72be5314d5353e05463d 527 Gene3D G3DSA:3.40.140.20 218 374 1.8E-55 T 31-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 Pfam PF01808 AICARFT/IMPCHase bienzyme 138 457 2.7E-111 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 9 527 1.1E-216 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 SMART SM00798 138 459 5.2E-189 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 Gene3D G3DSA:3.40.50.1380 2 201 7.5E-79 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BRM88_02730 3734082e396d72be5314d5353e05463d 527 SMART SM00851 20 133 5.7E-51 T 31-10-2018 IPR011607 Methylglyoxal synthase-like domain BRM88_02730 3734082e396d72be5314d5353e05463d 527 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 8 527 44.334 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 SUPERFAMILY SSF53927 220 527 7.02E-125 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_02730 3734082e396d72be5314d5353e05463d 527 Gene3D G3DSA:3.40.140.20 392 527 1.1E-58 T 31-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_02730 3734082e396d72be5314d5353e05463d 527 SUPERFAMILY SSF52335 8 197 3.4E-64 T 31-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BRM88_02730 3734082e396d72be5314d5353e05463d 527 PIRSF PIRSF000414 2 527 8.6E-211 T 31-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 Gene3D G3DSA:2.40.50.140 1 119 3.7E-42 T 31-10-2018 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 PIRSF PIRSF002070 150 176 2400.0 T 31-10-2018 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 PIRSF PIRSF002070 1 140 4.3E-34 T 31-10-2018 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 Pfam PF00436 Single-strand binding protein family 5 108 3.6E-38 T 31-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 SUPERFAMILY SSF50249 3 178 2.33E-56 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_07395 a690d2843d3d3c92196114c47469549f 178 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 178 1.6E-49 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BRM88_07395 a690d2843d3d3c92196114c47469549f 178 Hamap MF_00984 Single-stranded DNA-binding protein. 5 112 35.554 T 31-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BRM88_08800 c622c3b91e5cfe43cf099f5cb28e6fa4 133 Pfam PF06995 Phage P2 GpU 6 125 4.7E-42 T 31-10-2018 IPR009734 Myoviridae, GpU BRM88_08800 c622c3b91e5cfe43cf099f5cb28e6fa4 133 PIRSF PIRSF029208 1 132 6.2E-49 T 31-10-2018 IPR016912 Bacteriophage P2, GpU BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 SUPERFAMILY SSF63380 233 463 6.5E-54 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 542 558 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 511 522 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 565 573 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 498 507 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 404 411 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 286 296 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 473 492 1.4E-22 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Pfam PF00667 FAD binding domain 270 442 1.8E-17 T 31-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 SUPERFAMILY SSF52343 462 615 8.38E-48 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Pfam PF00258 Flavodoxin 72 195 9.7E-31 T 31-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Gene3D G3DSA:2.40.30.10 238 456 8.2E-59 T 31-10-2018 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00369 Flavodoxin signature 175 194 3.3E-16 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00369 Flavodoxin signature 151 161 3.3E-16 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00369 Flavodoxin signature 119 130 3.3E-16 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PRINTS PR00369 Flavodoxin signature 71 84 3.3E-16 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 615 5.4E-251 T 31-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Pfam PF00175 Oxidoreductase NAD-binding domain 474 579 2.0E-17 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Gene3D G3DSA:3.40.50.80 462 615 1.6E-52 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Gene3D G3DSA:3.40.50.360 60 223 1.1E-45 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 Gene3D G3DSA:1.20.990.10 296 402 8.2E-59 T 31-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 SUPERFAMILY SSF52218 68 215 1.82E-43 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_18065 e20cf36914f77e8ac05277116ef6bfa0 615 PIRSF PIRSF000207 1 615 1.1E-199 T 31-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 SUPERFAMILY SSF55811 230 357 8.26E-27 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 13 286 2.8E-100 T 31-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 202 218 - T 31-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Gene3D G3DSA:1.10.1670.10 16 221 1.1E-80 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 SUPERFAMILY SSF48150 11 234 1.1E-71 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Gene3D G3DSA:3.90.79.10 242 357 1.5E-17 T 31-10-2018 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 ProSitePatterns PS01155 Endonuclease III family signature. 109 138 - T 31-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Pfam PF14815 NUDIX domain 245 356 4.5E-23 T 31-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Gene3D G3DSA:1.10.340.30 28 139 1.1E-80 T 31-10-2018 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Pfam PF00633 Helix-hairpin-helix motif 107 134 1.9E-7 T 31-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 43 173 2.2E-17 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_16815 e23e14b83341b5329da3c683fc8d5106 357 SMART SM00478 46 200 1.5E-40 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 598 9.6E-123 T 31-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 SUPERFAMILY SSF82866 409 606 3.66E-38 T 31-10-2018 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Pfam PF13721 SecD export protein N-terminal TM region 2 102 2.4E-32 T 31-10-2018 IPR027398 SecD export protein N-terminal TM domain BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Pfam PF07549 SecD/SecF GG Motif 115 140 5.4E-6 T 31-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Pfam PF02355 Protein export membrane protein 434 602 5.6E-21 T 31-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 344 592 2.0E-63 T 31-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 613 45.268 T 31-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Gene3D G3DSA:1.20.1640.10 435 612 9.1E-13 T 31-10-2018 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Gene3D G3DSA:3.30.1360.200 276 430 1.3E-45 T 31-10-2018 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Gene3D G3DSA:3.30.70.260 26 105 3.9E-6 T 31-10-2018 BRM88_13105 41aea2416a90d9111fbaecd72438cf67 614 Gene3D G3DSA:3.30.70.3400 214 434 1.3E-45 T 31-10-2018 BRM88_04480 e0042999d97b7802f5305d4e3c9abfe4 117 Pfam PF07238 PilZ domain 15 104 7.1E-10 T 31-10-2018 IPR009875 PilZ domain GO:0035438 BRM88_04480 e0042999d97b7802f5305d4e3c9abfe4 117 Gene3D G3DSA:2.40.10.220 1 117 2.3E-49 T 31-10-2018 BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 64 77 8.1E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 18 33 8.1E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 78 91 8.1E-7 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 Pfam PF00561 alpha/beta hydrolase fold 10 97 1.3E-16 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 Gene3D G3DSA:3.40.50.1820 1 244 1.1E-46 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23440 6ab64056e9072a9c844303f12eed31ad 251 SUPERFAMILY SSF53474 2 250 3.71E-43 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_17240 f56f05a0dc05312d500d01c534468d84 219 Gene3D G3DSA:1.20.120.1200 4 169 1.7E-41 T 31-10-2018 BRM88_17240 f56f05a0dc05312d500d01c534468d84 219 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 167 5.6E-36 T 31-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 SUPERFAMILY SSF103473 11 473 7.19E-28 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 Gene3D G3DSA:1.20.1250.20 11 211 3.5E-11 T 31-10-2018 BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 Gene3D G3DSA:1.20.1250.20 227 473 6.4E-10 T 31-10-2018 BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 Pfam PF13347 MFS/sugar transport protein 305 473 3.5E-31 T 31-10-2018 BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 Pfam PF13347 MFS/sugar transport protein 15 276 5.9E-55 T 31-10-2018 BRM88_23565 a5777bd535e88724c4d1cd54b15ec7a9 495 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 13 272 2.7E-69 T 31-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 Gene3D G3DSA:1.10.10.10 80 166 1.5E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 SUPERFAMILY SSF88659 99 163 4.14E-15 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 Gene3D G3DSA:1.10.1740.10 4 72 1.2E-19 T 31-10-2018 BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 SUPERFAMILY SSF88946 15 91 7.06E-18 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 Pfam PF08281 Sigma-70, region 4 106 158 2.4E-12 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 160 1.8E-22 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_12410 7af39f1fe979d750be402d677fb2cc64 166 Pfam PF04542 Sigma-70 region 2 17 81 2.6E-15 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_18170 c8b1333b7a90b16c4cb6be8867deb500 452 Pfam PF13163 Protein of unknown function (DUF3999) 23 442 1.1E-111 T 31-10-2018 IPR025060 Protein of unknown function DUF3999 BRM88_13640 c2570e98e899113f1d1764f0ca99c73e 346 Gene3D G3DSA:3.40.47.10 2 346 2.1E-96 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13640 c2570e98e899113f1d1764f0ca99c73e 346 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 248 334 4.4E-26 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_13640 c2570e98e899113f1d1764f0ca99c73e 346 SUPERFAMILY SSF53901 5 333 1.67E-39 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13640 c2570e98e899113f1d1764f0ca99c73e 346 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 114 184 1.5E-4 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_08365 1989c786076cbde92f9fcf9b9e99be57 256 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 224 4.3E-41 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_08365 1989c786076cbde92f9fcf9b9e99be57 256 SUPERFAMILY SSF52096 8 246 1.02E-47 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_08365 1989c786076cbde92f9fcf9b9e99be57 256 Gene3D G3DSA:3.90.226.10 2 232 4.0E-54 T 31-10-2018 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 ProSitePatterns PS01054 Transaldolase signature 1. 34 42 - T 31-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 SUPERFAMILY SSF51569 6 320 4.4E-94 T 31-10-2018 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 17 316 2.0E-88 T 31-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 Hamap MF_00492 Transaldolase [tal]. 5 320 47.215 T 31-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 ProSitePatterns PS00958 Transaldolase active site. 133 150 - T 31-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BRM88_19495 0ad47c25ccb236a86cb6d5853a7ce217 322 Gene3D G3DSA:3.20.20.70 2 322 2.2E-117 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_21250 c1bac32559caa441dea01e92875c1e8a 296 SMART SM00267 119 285 5.7E-26 T 31-10-2018 IPR000160 GGDEF domain BRM88_21250 c1bac32559caa441dea01e92875c1e8a 296 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 279 5.8E-30 T 31-10-2018 IPR000160 GGDEF domain BRM88_21250 c1bac32559caa441dea01e92875c1e8a 296 Gene3D G3DSA:3.30.70.270 121 286 2.0E-45 T 31-10-2018 BRM88_21250 c1bac32559caa441dea01e92875c1e8a 296 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 126 281 5.0E-30 T 31-10-2018 IPR000160 GGDEF domain BRM88_21250 c1bac32559caa441dea01e92875c1e8a 296 SUPERFAMILY SSF55073 135 283 1.57E-34 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 31 49 3.3E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 10 30 3.3E-5 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 SUPERFAMILY SSF52540 8 172 1.8E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 Pfam PF07664 Ferrous iron transport protein B C terminus 398 450 1.5E-14 T 31-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 Pfam PF02421 Ferrous iron transport protein B 9 167 9.2E-52 T 31-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 Gene3D G3DSA:3.40.50.300 9 205 7.0E-41 T 31-10-2018 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 Pfam PF07670 Nucleoside recognition 286 380 4.4E-13 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BRM88_15435 ffea6d471922cbc86cc4fd1d300f5a20 619 Pfam PF07670 Nucleoside recognition 455 588 6.3E-25 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Gene3D G3DSA:2.40.110.10 126 238 5.1E-45 T 31-10-2018 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Gene3D G3DSA:1.20.140.10 239 383 3.5E-47 T 31-10-2018 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Gene3D G3DSA:1.10.540.10 1 125 1.1E-43 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 123 8.4E-34 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 SUPERFAMILY SSF56645 5 245 6.28E-83 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.1E-43 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 PIRSF PIRSF016578 15 387 7.3E-13 T 31-10-2018 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 SUPERFAMILY SSF47203 234 384 2.9E-47 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_23270 65a360c3b8ab49425fd98682731d827e 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 2.3E-26 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BRM88_23190 2d46478bf54b568360361469e8c11a22 418 SUPERFAMILY SSF53383 17 394 2.57E-90 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_23190 2d46478bf54b568360361469e8c11a22 418 Pfam PF00266 Aminotransferase class-V 42 357 2.1E-23 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_23190 2d46478bf54b568360361469e8c11a22 418 PIRSF PIRSF000524 12 417 5.6E-106 T 31-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 BRM88_23190 2d46478bf54b568360361469e8c11a22 418 Gene3D G3DSA:3.90.1150.10 19 389 3.2E-130 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_23190 2d46478bf54b568360361469e8c11a22 418 Gene3D G3DSA:3.40.640.10 30 291 3.2E-130 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_10305 6bcdd8076e1c1a74bd627ad1611fe54b 125 SUPERFAMILY SSF109604 59 109 6.91E-7 T 31-10-2018 BRM88_10305 6bcdd8076e1c1a74bd627ad1611fe54b 125 Gene3D G3DSA:1.10.3210.10 41 111 5.7E-11 T 31-10-2018 BRM88_10305 6bcdd8076e1c1a74bd627ad1611fe54b 125 Pfam PF08668 HDOD domain 70 109 1.5E-7 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD BRM88_20755 1d5008526f02425765615af9734acb19 857 Gene3D G3DSA:3.40.640.10 463 706 6.4E-13 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_20755 1d5008526f02425765615af9734acb19 857 SUPERFAMILY SSF53383 494 841 1.24E-13 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_20755 1d5008526f02425765615af9734acb19 857 SUPERFAMILY SSF53686 17 321 5.11E-68 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_20755 1d5008526f02425765615af9734acb19 857 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 486 797 3.9E-7 T 31-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BRM88_20755 1d5008526f02425765615af9734acb19 857 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 33 314 9.8E-63 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_20755 1d5008526f02425765615af9734acb19 857 Gene3D G3DSA:3.40.50.1100 62 155 1.8E-75 T 31-10-2018 BRM88_20755 1d5008526f02425765615af9734acb19 857 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BRM88_20755 1d5008526f02425765615af9734acb19 857 Gene3D G3DSA:3.40.50.1100 29 318 1.8E-75 T 31-10-2018 BRM88_17505 a3577557281de64177562780b49f5b62 189 Gene3D G3DSA:2.70.40.10 1 161 2.9E-52 T 31-10-2018 IPR036157 dUTPase-like superfamily BRM88_17505 a3577557281de64177562780b49f5b62 189 SUPERFAMILY SSF51283 3 188 5.76E-53 T 31-10-2018 IPR036157 dUTPase-like superfamily BRM88_17505 a3577557281de64177562780b49f5b62 189 Pfam PF00692 dUTPase 82 184 6.0E-7 T 31-10-2018 IPR029054 dUTPase-like BRM88_17505 a3577557281de64177562780b49f5b62 189 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 28.045 T 31-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 BRM88_17505 a3577557281de64177562780b49f5b62 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 1.1E-47 T 31-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 BRM88_22020 ce8ee69cbf9e2475e1d73196971a94e6 148 SUPERFAMILY SSF89095 1 146 9.94E-42 T 31-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 BRM88_22020 ce8ee69cbf9e2475e1d73196971a94e6 148 Pfam PF09424 Yqey-like protein 4 146 8.6E-54 T 31-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 BRM88_22020 ce8ee69cbf9e2475e1d73196971a94e6 148 Gene3D G3DSA:1.10.10.410 91 147 2.2E-17 T 31-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal BRM88_22020 ce8ee69cbf9e2475e1d73196971a94e6 148 Gene3D G3DSA:1.10.1510.10 1 90 4.2E-29 T 31-10-2018 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 Gene3D G3DSA:3.40.50.2300 1 125 3.4E-36 T 31-10-2018 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 SMART SM00448 6 117 2.7E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 SUPERFAMILY SSF52172 5 123 3.84E-35 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_21360 433240c11d8f010b6403fa90017b042e 245 Pfam PF00072 Response regulator receiver domain 8 117 1.0E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 SMART SM00850 146 243 2.8E-25 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 Pfam PF04397 LytTr DNA-binding domain 148 242 8.5E-24 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BRM88_21360 433240c11d8f010b6403fa90017b042e 245 Gene3D G3DSA:2.40.50.40 138 204 4.2E-7 T 31-10-2018 BRM88_20105 ddef6e684351697754254deaff7a1ba7 296 SUPERFAMILY SSF51197 17 295 3.89E-84 T 31-10-2018 BRM88_20105 ddef6e684351697754254deaff7a1ba7 296 Gene3D G3DSA:3.60.130.10 15 296 2.5E-85 T 31-10-2018 BRM88_20105 ddef6e684351697754254deaff7a1ba7 296 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 19 289 4.1E-62 T 31-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 457 2.5E-80 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 206 218 9.2E-14 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 379 395 9.2E-14 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 222 235 9.2E-14 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 PRINTS PR01042 Aspartyl-tRNA synthetase signature 419 433 9.2E-14 T 31-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 4 464 45.014 T 31-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 Gene3D G3DSA:3.30.930.10 107 463 5.2E-107 T 31-10-2018 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 Pfam PF01336 OB-fold nucleic acid binding domain 20 97 3.7E-10 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 SUPERFAMILY SSF55681 103 462 7.47E-93 T 31-10-2018 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 SUPERFAMILY SSF50249 16 100 9.21E-17 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 16 464 1.1E-189 T 31-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BRM88_12815 0d943fa2d4160e26929f1ba915276d52 464 Gene3D G3DSA:2.40.50.140 2 102 1.0E-17 T 31-10-2018 BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 Gene3D G3DSA:3.30.450.90 1 100 7.6E-35 T 31-10-2018 BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 Pfam PF00437 Type II/IV secretion system protein 12 269 4.6E-46 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 341 9.6E-157 T 31-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 Gene3D G3DSA:3.40.50.300 101 345 8.2E-105 T 31-10-2018 BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 SMART SM00382 122 248 0.0059 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_07280 2f081a8f0116c7b13370e540b56a9267 345 SUPERFAMILY SSF52540 5 336 1.16E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16990 339555196bd871fb13e8a90d7cad09d1 484 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 33 484 4.4E-156 T 31-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 BRM88_16990 339555196bd871fb13e8a90d7cad09d1 484 Pfam PF02397 Bacterial sugar transferase 293 478 9.9E-64 T 31-10-2018 IPR003362 Bacterial sugar transferase BRM88_16990 339555196bd871fb13e8a90d7cad09d1 484 Pfam PF13727 CoA-binding domain 77 255 1.6E-31 T 31-10-2018 BRM88_16990 339555196bd871fb13e8a90d7cad09d1 484 Gene3D G3DSA:3.40.50.720 155 278 2.6E-12 T 31-10-2018 BRM88_16990 339555196bd871fb13e8a90d7cad09d1 484 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 32 484 7.6E-147 T 31-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase BRM88_14360 52d841d23ceda53cfac1b882646be140 299 Gene3D G3DSA:3.40.50.620 81 216 1.4E-93 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_14360 52d841d23ceda53cfac1b882646be140 299 SUPERFAMILY SSF52374 6 280 4.86E-81 T 31-10-2018 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 4.1E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 4.1E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 168 178 4.1E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 184 192 4.1E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 4.1E-13 T 31-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 109 9.7E-25 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 125 233 5.1E-22 T 31-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 Gene3D G3DSA:3.40.50.620 6 282 1.4E-93 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_14360 52d841d23ceda53cfac1b882646be140 299 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 288 41.23 T 31-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 BRM88_14360 52d841d23ceda53cfac1b882646be140 299 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 268 9.6E-102 T 31-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 Gene3D G3DSA:1.10.150.240 19 85 7.9E-58 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 Gene3D G3DSA:3.40.50.1000 7 206 7.9E-58 T 31-10-2018 IPR023214 HAD superfamily BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 2.4E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 2.4E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 2.4E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 102 180 8.6E-8 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 4 216 31.923 T 31-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 79 184 6.2E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 SUPERFAMILY SSF56784 4 215 9.57E-58 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 187 5.6E-36 T 31-10-2018 BRM88_03810 03040a0f5f8dd2f8a7270f7c1e0cc87c 216 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 215 4.2E-62 T 31-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 BRM88_23345 6025341f4ded4bce6ad6ef9c07a54960 364 Gene3D G3DSA:3.40.50.300 33 180 6.1E-18 T 31-10-2018 BRM88_23345 6025341f4ded4bce6ad6ef9c07a54960 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 364 49.242 T 31-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 BRM88_23345 6025341f4ded4bce6ad6ef9c07a54960 364 Pfam PF03969 AFG1-like ATPase 4 359 2.0E-126 T 31-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 BRM88_23345 6025341f4ded4bce6ad6ef9c07a54960 364 SUPERFAMILY SSF52540 51 176 1.88E-12 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 SMART SM00448 3 116 2.5E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 Gene3D G3DSA:3.40.50.12740 3 209 4.0E-54 T 31-10-2018 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 SMART SM00421 146 203 1.9E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 3.0E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 Pfam PF00072 Response regulator receiver domain 5 116 1.8E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 SUPERFAMILY SSF52172 2 132 3.27E-30 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 4.4E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 4.4E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 4.4E-11 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_16450 399a0f9a912f40d8f16b1d7ed49d8cf6 215 SUPERFAMILY SSF46894 144 210 4.76E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 SUPERFAMILY SSF51735 7 155 2.12E-38 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 9 137 2.1E-38 T 31-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 267 383 2.1E-37 T 31-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 389 1.9E-133 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 SUPERFAMILY SSF69055 299 388 1.11E-29 T 31-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 9 388 45.084 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 PIRSF PIRSF006205 6 395 6.9E-143 T 31-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 151 235 1.5E-38 T 31-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 SUPERFAMILY SSF55347 131 270 6.54E-58 T 31-10-2018 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Gene3D G3DSA:1.10.1740.10 308 393 2.7E-27 T 31-10-2018 BRM88_10280 d50f5f978c961560995b95b14b4263ed 396 Gene3D G3DSA:3.40.50.720 2 155 7.6E-45 T 31-10-2018 BRM88_17955 e22503802c0a994fbe3c56fc2352b910 113 SUPERFAMILY SSF50022 5 112 8.51E-23 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_17955 e22503802c0a994fbe3c56fc2352b910 113 Pfam PF00355 Rieske [2Fe-2S] domain 29 96 3.3E-11 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BRM88_17955 e22503802c0a994fbe3c56fc2352b910 113 Gene3D G3DSA:2.102.10.10 2 113 2.0E-16 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_20165 523ca87118215ef5a3fb76c9a56b4e36 432 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 209 428 4.4E-75 T 31-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BRM88_20165 523ca87118215ef5a3fb76c9a56b4e36 432 Pfam PF07670 Nucleoside recognition 98 197 2.2E-7 T 31-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BRM88_20165 523ca87118215ef5a3fb76c9a56b4e36 432 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 13 86 3.3E-25 T 31-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 Gene3D G3DSA:3.40.50.1480 15 480 1.2E-230 T 31-10-2018 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 479 6.3E-146 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 PIRSF PIRSF001109 1 480 9.4E-190 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 472 47.736 T 31-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 238 400 7.0E-81 T 31-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 260 277 - T 31-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 SUPERFAMILY SSF52283 10 480 1.25E-112 T 31-10-2018 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 SMART SM00996 12 479 0.0 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 SMART SM00997 238 400 9.3E-110 T 31-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 SUPERFAMILY SSF51735 238 400 1.4E-79 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 Gene3D G3DSA:3.40.50.720 241 401 1.2E-230 T 31-10-2018 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 472 9.0E-186 T 31-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_20260 3e2166508fc1d3302d979aed01614bc0 480 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 31-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 BRM88_14965 ca35b2d46be119d039935972d071db6d 104 SUPERFAMILY SSF48295 3 69 7.32E-14 T 31-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BRM88_14965 ca35b2d46be119d039935972d071db6d 104 Gene3D G3DSA:1.10.10.10 1 75 4.7E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_14965 ca35b2d46be119d039935972d071db6d 104 Pfam PF06627 Protein of unknown function (DUF1153) 5 62 1.5E-7 T 31-10-2018 IPR009534 Protein of unknown function DUF1153 BRM88_12075 47af1803b046fe22b4d7895f642eec73 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_12075 47af1803b046fe22b4d7895f642eec73 394 Pfam PF00872 Transposase, Mutator family 11 368 7.6E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_13065 47af1803b046fe22b4d7895f642eec73 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_13065 47af1803b046fe22b4d7895f642eec73 394 Pfam PF00872 Transposase, Mutator family 11 368 7.6E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 SUPERFAMILY SSF56235 9 182 5.5E-53 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 12 183 40.903 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 Pfam PF00227 Proteasome subunit 10 181 1.7E-20 T 31-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 13 183 1.4E-81 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 PIRSF PIRSF039093 6 183 2.0E-81 T 31-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BRM88_21275 d82aea9ebf4ed5d3767a96557a46b4f0 183 Gene3D G3DSA:3.60.20.10 9 183 2.1E-62 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_14010 5452a38ba711fd7dc0d29834d2eec55c 321 SMART SM01126 137 282 6.9E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14010 5452a38ba711fd7dc0d29834d2eec55c 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.0E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14010 5452a38ba711fd7dc0d29834d2eec55c 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 Gene3D G3DSA:1.10.645.20 22 435 7.4E-169 T 31-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 61 72 - T 31-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 SUPERFAMILY SSF56762 34 435 4.06E-134 T 31-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 24 435 5.7E-181 T 31-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 15 435 48.965 T 31-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17270 3ba838d5fe0ab4c09ca493f44258c59f 435 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 138 435 1.4E-118 T 31-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 300 381 7.1E-7 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 387 527 2.7E-40 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 1009 1161 2.8E-31 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 47 209 7.2E-28 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 215 299 2.7E-10 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 393 518 2.62E-30 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.60.40.4050 728 767 2.3E-5 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 729 904 2.09E-27 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF54523 1143 1265 3.14E-13 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 995 1153 5.36E-27 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 612 668 1.5E-5 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 669 726 7.5E-9 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 538 611 3.0E-7 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:2.150.10.10 768 881 4.3E-17 T 31-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 880 911 8.6E-8 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 177 210 1.1E-9 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1132 1168 4.7E-7 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 495 526 2.1E-9 T 31-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 610 723 1.96E-15 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 528 640 5.62E-14 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 219 315 2.22E-10 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 22 5.5E-7 T 31-10-2018 IPR024973 ESPR domain BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 64 201 6.8E-24 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:1.20.5.170 882 971 8.3E-15 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Gene3D G3DSA:3.30.1300.30 1162 1265 1.2E-15 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 SUPERFAMILY SSF101967 303 379 8.89E-6 T 31-10-2018 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF03895 YadA-like membrane anchor domain 1212 1265 3.8E-9 T 31-10-2018 IPR005594 YadA-like, C-terminal BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 451 477 8.6E-7 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 395 419 2.8E-4 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 105 131 2.9E-5 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 696 722 4.1E-5 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 731 757 1.8E-4 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_04230 1f1758a4bb1387b78b2b47dac5396fac 1265 Pfam PF05658 Head domain of trimeric autotransporter adhesin 423 449 8.7E-6 T 31-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 Pfam PF00462 Glutaredoxin 20 84 2.1E-18 T 31-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 SMART SM00450 208 303 3.7E-14 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 SUPERFAMILY SSF89360 114 201 6.08E-11 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 Gene3D G3DSA:3.40.30.10 10 104 5.5E-30 T 31-10-2018 BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 SUPERFAMILY SSF52833 8 104 2.56E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 Pfam PF00581 Rhodanese-like domain 211 299 2.4E-8 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 Gene3D G3DSA:3.40.250.10 199 304 5.7E-19 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 SUPERFAMILY SSF52821 201 302 1.57E-20 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 9 103 3.5E-39 T 31-10-2018 IPR004480 Monothiol glutaredoxin-related BRM88_05530 ff021746f442cc30608757bf18a9d64c 308 Gene3D G3DSA:2.60.300.12 115 198 1.0E-5 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 462 45.036 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 PIRSF PIRSF000485 1 476 6.2E-156 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 Pfam PF13522 Glutamine amidotransferase domain 61 193 2.5E-15 T 31-10-2018 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 Gene3D G3DSA:3.40.50.2020 273 442 4.4E-144 T 31-10-2018 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 462 8.1E-161 T 31-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BRM88_19630 634de06916c57bc357777c8f6594bea9 488 SUPERFAMILY SSF53271 248 473 1.48E-68 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_19630 634de06916c57bc357777c8f6594bea9 488 Gene3D G3DSA:3.60.20.10 2 463 4.4E-144 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_19630 634de06916c57bc357777c8f6594bea9 488 SUPERFAMILY SSF56235 2 255 2.32E-65 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_23855 09592ccc3a106400ff36c3715578cdaf 265 Pfam PF02673 Bacitracin resistance protein BacA 7 254 3.9E-68 T 31-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BRM88_23855 09592ccc3a106400ff36c3715578cdaf 265 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 260 15.863 T 31-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 SMART SM00260 18 157 3.5E-22 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 Gene3D G3DSA:2.30.30.40 25 151 1.1E-25 T 31-10-2018 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 SMART SM00448 182 303 1.1E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 PIRSF PIRSF002867 2 311 5.3E-98 T 31-10-2018 IPR024181 Chemotaxis response regulator CheV BRM88_13520 73104913f798b9a3d942aa092def64ef 314 Pfam PF01584 CheW-like domain 23 159 2.4E-32 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 Pfam PF00072 Response regulator receiver domain 184 296 8.8E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 SUPERFAMILY SSF52172 181 308 1.18E-22 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13520 73104913f798b9a3d942aa092def64ef 314 Gene3D G3DSA:3.40.50.2300 177 307 1.7E-21 T 31-10-2018 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 Gene3D G3DSA:2.40.50.180 42 152 1.1E-25 T 31-10-2018 BRM88_13520 73104913f798b9a3d942aa092def64ef 314 SUPERFAMILY SSF50341 18 160 2.62E-32 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 Pfam PF08345 Flagellar M-ring protein C-terminal 263 439 8.2E-46 T 31-10-2018 IPR013556 Flagellar M-ring C-terminal BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 12 573 1.2E-82 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PIRSF PIRSF004862 6 574 1.5E-134 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 Pfam PF01514 Secretory protein of YscJ/FliF family 39 230 5.3E-66 T 31-10-2018 IPR006182 Secretory protein YscJ/FliF BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PRINTS PR01009 Flagellar M-ring protein signature 363 387 7.1E-33 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PRINTS PR01009 Flagellar M-ring protein signature 163 177 7.1E-33 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PRINTS PR01009 Flagellar M-ring protein signature 206 224 7.1E-33 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PRINTS PR01009 Flagellar M-ring protein signature 276 294 7.1E-33 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 PRINTS PR01009 Flagellar M-ring protein signature 131 149 7.1E-33 T 31-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BRM88_13690 44b7515658fd9fd3d3967d13c419229d 574 Gene3D G3DSA:3.30.300.30 132 235 8.8E-14 T 31-10-2018 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 386 534 1.7E-48 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Gene3D G3DSA:3.40.50.970 2 183 7.6E-70 T 31-10-2018 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Gene3D G3DSA:3.40.50.1220 189 360 8.5E-54 T 31-10-2018 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 423 442 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 11 174 4.9E-57 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 11 558 1.5E-205 T 31-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 SUPERFAMILY SSF52467 195 353 1.73E-53 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 SUPERFAMILY SSF52518 368 559 1.29E-66 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 332 4.8E-43 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 Gene3D G3DSA:3.40.50.970 361 570 3.7E-67 T 31-10-2018 BRM88_04775 49accfdc20d2705a8e83e1b77cbbc51b 573 SUPERFAMILY SSF52518 10 190 1.51E-60 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 PIRSF PIRSF029063 2 167 1.5E-40 T 31-10-2018 IPR011225 Type IV secretory pathway, VirJ component BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 PIRSF PIRSF029063 156 413 4.6E-111 T 31-10-2018 IPR011225 Type IV secretory pathway, VirJ component BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 SUPERFAMILY SSF53474 213 405 8.11E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 Pfam PF06057 Bacterial virulence protein (VirJ) 218 408 7.5E-84 T 31-10-2018 IPR010333 Bacterial virulence BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 Gene3D G3DSA:3.40.50.1820 206 410 4.5E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14420 ece857242d599b9efcdc0e75295f3073 420 SUPERFAMILY SSF53474 33 159 2.74E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 Hamap MF_00821 Protein-export protein SecB [secB]. 1 156 31.86 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 19 153 8.4E-48 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 Gene3D G3DSA:3.10.420.10 7 168 6.6E-54 T 31-10-2018 IPR035958 SecB-like superfamily BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 24 41 2.1E-35 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 108 130 2.1E-35 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 84 104 2.1E-35 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 134 152 2.1E-35 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 Pfam PF02556 Preprotein translocase subunit SecB 17 154 5.0E-53 T 31-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BRM88_22400 6f69caca8d7ec944696b622a1ffe6448 171 SUPERFAMILY SSF54611 20 151 4.36E-47 T 31-10-2018 IPR035958 SecB-like superfamily BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 SUPERFAMILY SSF55486 24 157 4.15E-44 T 31-10-2018 BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 121 131 - T 31-10-2018 IPR020549 Endoribonuclease YbeY, conserved site BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 Pfam PF02130 Uncharacterized protein family UPF0054 27 150 1.0E-34 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 7 155 23.638 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 Gene3D G3DSA:3.40.390.30 5 161 2.1E-50 T 31-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 BRM88_14625 e03ab24161f4d1839767f2ba2fdfa14b 161 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 43 152 1.8E-36 T 31-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 Gene3D G3DSA:1.10.10.10 189 254 6.7E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 Pfam PF00196 Bacterial regulatory proteins, luxR family 191 244 2.7E-18 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 Pfam PF03472 Autoinducer binding domain 26 175 7.9E-24 T 31-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 ProSitePatterns PS00622 LuxR-type HTH domain signature. 206 233 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 222 234 4.5E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 206 4.5E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 206 222 4.5E-9 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 SUPERFAMILY SSF75516 5 183 7.45E-31 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 SMART SM00421 189 246 5.0E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 SUPERFAMILY SSF46894 176 252 4.08E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_06485 e80d18613c4cd28ecf2b049a24c98bcc 254 Gene3D G3DSA:3.30.450.80 7 182 2.2E-19 T 31-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily BRM88_04940 ae8f7ad9934cc052b99fbcac3990d1e6 707 Gene3D G3DSA:2.170.130.10 26 156 5.3E-5 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_04940 ae8f7ad9934cc052b99fbcac3990d1e6 707 Pfam PF00593 TonB dependent receptor 235 704 1.7E-36 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_04940 ae8f7ad9934cc052b99fbcac3990d1e6 707 Gene3D G3DSA:2.40.170.20 157 707 1.8E-51 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_04940 ae8f7ad9934cc052b99fbcac3990d1e6 707 SUPERFAMILY SSF56935 29 707 3.15E-78 T 31-10-2018 BRM88_04940 ae8f7ad9934cc052b99fbcac3990d1e6 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 150 9.1E-5 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_11200 25585ca7c3f0fc3b84d5fa43d19abdb4 200 Pfam PF08534 Redoxin 49 171 1.3E-16 T 31-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BRM88_11200 25585ca7c3f0fc3b84d5fa43d19abdb4 200 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 17 185 4.6E-52 T 31-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 BRM88_11200 25585ca7c3f0fc3b84d5fa43d19abdb4 200 Gene3D G3DSA:3.40.30.10 31 192 7.2E-37 T 31-10-2018 BRM88_11200 25585ca7c3f0fc3b84d5fa43d19abdb4 200 SUPERFAMILY SSF52833 43 183 4.6E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_11200 25585ca7c3f0fc3b84d5fa43d19abdb4 200 ProSitePatterns PS00194 Thioredoxin family active site. 78 96 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_11155 6807d3287a5994687897f84d78bb945a 493 Pfam PF13520 Amino acid permease 41 459 1.9E-56 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_11155 6807d3287a5994687897f84d78bb945a 493 Gene3D G3DSA:1.20.1740.10 35 491 1.9E-120 T 31-10-2018 BRM88_11155 6807d3287a5994687897f84d78bb945a 493 PIRSF PIRSF006060 21 492 1.0E-87 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_17715 9805c738a986c3ab000dfb496cc5dc93 138 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 19 121 25.038 T 31-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BRM88_17715 9805c738a986c3ab000dfb496cc5dc93 138 SUPERFAMILY SSF81301 21 126 1.26E-38 T 31-10-2018 BRM88_17715 9805c738a986c3ab000dfb496cc5dc93 138 Pfam PF02410 Ribosomal silencing factor during starvation 26 120 4.1E-28 T 31-10-2018 BRM88_17715 9805c738a986c3ab000dfb496cc5dc93 138 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 23 120 2.1E-37 T 31-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BRM88_17715 9805c738a986c3ab000dfb496cc5dc93 138 Gene3D G3DSA:3.30.460.10 19 134 2.0E-38 T 31-10-2018 BRM88_01030 52ffe4c9aa246d8ba5fe7becfb0378b7 270 SUPERFAMILY SSF56925 113 245 1.05E-8 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BRM88_01030 52ffe4c9aa246d8ba5fe7becfb0378b7 270 Pfam PF13505 Outer membrane protein beta-barrel domain 95 256 6.8E-7 T 31-10-2018 IPR027385 Outer membrane protein beta-barrel BRM88_19295 4c6410a083803eeb8fb7709f760e10a2 88 Gene3D G3DSA:3.30.70.100 1 87 1.4E-24 T 31-10-2018 BRM88_19295 4c6410a083803eeb8fb7709f760e10a2 88 Pfam PF00708 Acylphosphatase 5 85 1.0E-19 T 31-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BRM88_19295 4c6410a083803eeb8fb7709f760e10a2 88 SUPERFAMILY SSF54975 1 86 3.27E-24 T 31-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 PRINTS PR00603 Cytochrome C1 signature 46 65 6.6E-11 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 PRINTS PR00603 Cytochrome C1 signature 193 212 6.6E-11 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 PRINTS PR00603 Cytochrome C1 signature 108 132 6.6E-11 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 PRINTS PR00603 Cytochrome C1 signature 212 227 6.6E-11 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 SUPERFAMILY SSF46626 29 211 3.39E-49 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 Pfam PF02167 Cytochrome C1 family 38 246 2.7E-22 T 31-10-2018 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 BRM88_14570 b379c3512e03da3340763a82d62f88b5 247 Gene3D G3DSA:1.10.760.10 30 212 3.1E-25 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_14165 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_14165 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_14165 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_14165 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_14165 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_12620 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_12620 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_12620 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_12620 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_12620 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_16630 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_16630 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_16630 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_16630 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16630 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_03745 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_03745 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_03745 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_03745 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_03745 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_18230 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_18230 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_18230 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_18230 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_18230 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_21645 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_21645 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_21645 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_21645 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_21645 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_22545 bd9003e62379d8996567930121270185 344 Pfam PF13358 DDE superfamily endonuclease 172 303 7.3E-33 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_22545 bd9003e62379d8996567930121270185 344 Gene3D G3DSA:3.30.420.470 151 344 1.2E-12 T 31-10-2018 BRM88_22545 bd9003e62379d8996567930121270185 344 Pfam PF13551 Winged helix-turn helix 18 81 3.0E-9 T 31-10-2018 BRM88_22545 bd9003e62379d8996567930121270185 344 SUPERFAMILY SSF46689 6 132 1.43E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_22545 bd9003e62379d8996567930121270185 344 Pfam PF13592 Winged helix-turn helix 100 156 6.1E-21 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_05330 884558f4a7d59ffd8c408b9c74eafde4 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.1E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05330 884558f4a7d59ffd8c408b9c74eafde4 321 SMART SM01126 137 282 9.4E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05330 884558f4a7d59ffd8c408b9c74eafde4 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_13365 b63e97c7415b58802df208c58f308c51 401 Pfam PF00108 Thiolase, N-terminal domain 9 271 1.9E-74 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 PIRSF PIRSF000429 2 401 1.5E-126 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 Pfam PF02803 Thiolase, C-terminal domain 278 399 4.5E-44 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 Gene3D G3DSA:3.40.47.10 10 298 9.7E-147 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 Gene3D G3DSA:3.40.47.10 129 395 9.7E-147 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 31-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 SUPERFAMILY SSF53901 7 278 1.51E-75 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 399 4.2E-140 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_13365 b63e97c7415b58802df208c58f308c51 401 SUPERFAMILY SSF53901 279 399 8.0E-42 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_13535 04d34cde9af3f1cb2781b00098d9d73e 221 Gene3D G3DSA:2.60.40.4070 101 184 1.2E-30 T 31-10-2018 BRM88_13535 04d34cde9af3f1cb2781b00098d9d73e 221 Pfam PF13860 FlgD Ig-like domain 103 177 2.4E-20 T 31-10-2018 IPR025965 FlgD Ig-like domain BRM88_13535 04d34cde9af3f1cb2781b00098d9d73e 221 Gene3D G3DSA:2.30.30.910 185 221 5.7E-19 T 31-10-2018 BRM88_13535 04d34cde9af3f1cb2781b00098d9d73e 221 Pfam PF13861 FlgD Tudor-like domain 84 217 3.5E-15 T 31-10-2018 IPR025963 FlgD Tudor-like domain BRM88_13535 04d34cde9af3f1cb2781b00098d9d73e 221 Pfam PF03963 Flagellar hook capping protein - N-terminal region 15 75 3.4E-22 T 31-10-2018 IPR005648 Flagellar hook capping protein BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 60 817 2.5E-245 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 30 817 25.429 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:3.10.20.310 53 126 1.8E-20 T 31-10-2018 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF07244 Surface antigen variable number repeat 382 455 2.3E-15 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF07244 Surface antigen variable number repeat 62 126 1.1E-4 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF07244 Surface antigen variable number repeat 301 379 2.7E-11 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF07244 Surface antigen variable number repeat 211 298 6.1E-11 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF07244 Surface antigen variable number repeat 128 207 2.7E-12 T 31-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:3.10.20.310 210 299 2.4E-18 T 31-10-2018 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:3.10.20.310 127 208 2.0E-17 T 31-10-2018 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:3.10.20.310 300 380 4.2E-17 T 31-10-2018 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:2.40.160.50 462 817 4.7E-107 T 31-10-2018 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Pfam PF01103 Surface antigen 483 817 6.3E-91 T 31-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 PIRSF PIRSF006076 25 817 2.1E-256 T 31-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BRM88_10270 ed8d05a9826c65b9666e3b61477c9718 817 Gene3D G3DSA:3.10.20.310 381 456 6.5E-23 T 31-10-2018 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 Pfam PF00925 GTP cyclohydrolase II 208 362 2.7E-28 T 31-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 SUPERFAMILY SSF142695 204 364 3.79E-39 T 31-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 SUPERFAMILY SSF55821 2 202 1.74E-82 T 31-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BRM88_20550 84d257fb9dd3a5230519f29984431452 379 Gene3D G3DSA:3.90.870.10 1 206 2.3E-85 T 31-10-2018 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 PIRSF PIRSF001259 1 368 4.0E-114 T 31-10-2018 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 5 199 2.2E-68 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 9 198 1.2E-81 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20550 84d257fb9dd3a5230519f29984431452 379 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 37.978 T 31-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_04285 bea6834d06e40e5ce1b816d7b58943ac 283 Gene3D G3DSA:1.10.40.60 91 193 1.2E-16 T 31-10-2018 IPR038072 GspK, central domain superfamily BRM88_04285 bea6834d06e40e5ce1b816d7b58943ac 283 SUPERFAMILY SSF158544 95 192 4.71E-23 T 31-10-2018 IPR038072 GspK, central domain superfamily BRM88_04285 bea6834d06e40e5ce1b816d7b58943ac 283 PIRSF PIRSF002786 1 279 1.0E-52 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 BRM88_04285 bea6834d06e40e5ce1b816d7b58943ac 283 Pfam PF03934 Type II secretion system (T2SS), protein K 31 222 1.6E-46 T 31-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 BRM88_04865 50d66bd191f82edc653a341943867763 187 Gene3D G3DSA:3.40.50.300 1 187 5.2E-64 T 31-10-2018 BRM88_04865 50d66bd191f82edc653a341943867763 187 PRINTS PR00094 Adenylate kinase signature 133 148 3.9E-35 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 PRINTS PR00094 Adenylate kinase signature 81 97 3.9E-35 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 PRINTS PR00094 Adenylate kinase signature 4 17 3.9E-35 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 PRINTS PR00094 Adenylate kinase signature 32 46 3.9E-35 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 PRINTS PR00094 Adenylate kinase signature 150 164 3.9E-35 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 Hamap MF_00235 Adenylate kinase [adk]. 1 186 46.927 T 31-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 Pfam PF00406 Adenylate kinase 5 163 2.4E-55 T 31-10-2018 BRM88_04865 50d66bd191f82edc653a341943867763 187 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 31-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BRM88_04865 50d66bd191f82edc653a341943867763 187 SUPERFAMILY SSF52540 1 186 8.75E-40 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_21860 11e82fc4786f8af754e873bb03c6f052 65 PIRSF PIRSF037225 2 65 1.2E-29 T 31-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 BRM88_21860 11e82fc4786f8af754e873bb03c6f052 65 Pfam PF14255 Cysteine-rich CPXCG 10 59 1.1E-22 T 31-10-2018 IPR025990 Cysteine-rich CPXCG protein BRM88_21845 46314e5ef21a298c863b79731befd5f6 146 SUPERFAMILY SSF47473 89 136 6.15E-9 T 31-10-2018 IPR011992 EF-hand domain pair BRM88_21845 46314e5ef21a298c863b79731befd5f6 146 Gene3D G3DSA:1.10.238.10 84 138 3.1E-9 T 31-10-2018 BRM88_21845 46314e5ef21a298c863b79731befd5f6 146 ProSitePatterns PS00018 EF-hand calcium-binding domain. 121 133 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_21845 46314e5ef21a298c863b79731befd5f6 146 Pfam PF13202 EF hand 117 133 1.3E-5 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 6 273 3.3E-71 T 31-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 3 274 32.519 T 31-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 SUPERFAMILY SSF51735 103 273 2.15E-38 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 Gene3D G3DSA:3.40.50.10860 6 263 3.6E-76 T 31-10-2018 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 118 194 1.1E-11 T 31-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 SUPERFAMILY SSF53223 4 102 1.15E-30 T 31-10-2018 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 Gene3D G3DSA:3.40.50.720 102 242 3.6E-76 T 31-10-2018 BRM88_01985 b97b0129c63cc61b2dd6164b66c32060 283 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 8 90 9.1E-25 T 31-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 218 1.1E-15 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 SMART SM00862 145 218 3.3E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 SUPERFAMILY SSF52172 1 176 1.99E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 Pfam PF00072 Response regulator receiver domain 4 111 4.3E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 Gene3D G3DSA:3.40.50.2300 1 121 6.5E-35 T 31-10-2018 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 SMART SM00448 1 112 3.7E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05620 91dc6a6335143aca737b936f6fbe3ff3 233 Gene3D G3DSA:1.10.10.10 122 226 4.9E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF50447 207 303 1.96E-32 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF50465 300 395 4.32E-36 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.5E-56 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.3E-19 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF52540 6 221 9.96E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.3E-34 T 31-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:2.40.30.10 340 395 4.7E-30 T 31-10-2018 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:2.40.30.10 208 336 2.0E-54 T 31-10-2018 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.1E-226 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.088 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:3.40.50.300 1 205 1.6E-68 T 31-10-2018 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 7.8E-14 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19205 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF50447 207 303 1.96E-32 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF50465 300 395 4.32E-36 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 2.5E-56 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF03144 Elongation factor Tu domain 2 227 296 1.3E-19 T 31-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 SUPERFAMILY SSF52540 6 221 9.96E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 4.3E-34 T 31-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:2.40.30.10 340 395 4.7E-30 T 31-10-2018 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:2.40.30.10 208 336 2.0E-54 T 31-10-2018 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 396 4.1E-226 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 60.088 T 31-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 Gene3D G3DSA:3.40.50.300 1 205 1.6E-68 T 31-10-2018 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 149 7.8E-14 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_19135 3e0bfa6ea6da8257d411890396dcddb9 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.9E-24 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_01580 1ccd0f3d9d1da3eb0b13e3997983f9e9 146 Gene3D G3DSA:3.40.50.9100 3 134 3.4E-9 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_01580 1ccd0f3d9d1da3eb0b13e3997983f9e9 146 SUPERFAMILY SSF52304 2 134 3.79E-18 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_01580 1ccd0f3d9d1da3eb0b13e3997983f9e9 146 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 1 131 6.0E-4 T 31-10-2018 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 87 410 3.6E-78 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 Gene3D G3DSA:2.60.120.430 684 870 1.6E-24 T 31-10-2018 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 451 665 4.4E-34 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 263 279 2.2E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 176 195 2.2E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 222 238 2.2E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 152 168 2.2E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 PRINTS PR00133 Glycosyl hydrolase family 3 signature 333 351 2.2E-19 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 Gene3D G3DSA:3.20.20.300 71 432 6.1E-126 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 SUPERFAMILY SSF52279 451 666 2.75E-46 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 SUPERFAMILY SSF51445 68 450 8.84E-105 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_12490 54bb0a5489fcc26f162a43fe536c632b 870 Gene3D G3DSA:3.40.50.1700 437 668 2.1E-67 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_24475 aec339694fe56bb6dde657ad35978755 106 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 26 81 9.9E-16 T 31-10-2018 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 Pfam PF00072 Response regulator receiver domain 6 117 2.0E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.9E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 Gene3D G3DSA:3.40.50.12740 4 206 2.8E-48 T 31-10-2018 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 SMART SM00421 146 203 9.0E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 SUPERFAMILY SSF52172 2 150 2.42E-26 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 SMART SM00448 4 118 2.4E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 SUPERFAMILY SSF46894 129 204 6.46E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_05635 596bd84127faa0e68ae4ddf40ecd9bad 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 336 350 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 134 147 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 206 234 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 184 199 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 259 279 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PRINTS PR00143 Citrate synthase signature 316 332 1.9E-36 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 PIRSF PIRSF001369 10 384 4.3E-109 T 31-10-2018 IPR024176 Citrate synthase, bacterial-type BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 SUPERFAMILY SSF48256 17 377 6.15E-122 T 31-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 ProSitePatterns PS00480 Citrate synthase signature. 266 278 - T 31-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 Gene3D G3DSA:1.10.580.10 37 363 1.0E-123 T 31-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 16 383 2.2E-152 T 31-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 Gene3D G3DSA:1.10.230.10 232 330 1.0E-123 T 31-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain BRM88_04515 0a72fd40c350668bbb9cb3f23bf44439 384 Pfam PF00285 Citrate synthase, C-terminal domain 17 365 3.2E-112 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 SUPERFAMILY SSF116726 337 413 5.23E-15 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 SUPERFAMILY SSF116726 240 313 3.01E-9 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 Pfam PF03600 Citrate transporter 23 563 1.0E-46 T 31-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 Pfam PF02080 TrkA-C domain 338 403 4.4E-10 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 Pfam PF02080 TrkA-C domain 246 313 4.2E-8 T 31-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 Gene3D G3DSA:3.30.70.1450 335 408 5.0E-14 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BRM88_17950 69734a8d14ece4104b7b917dc02df875 620 Gene3D G3DSA:3.30.70.1450 243 316 1.9E-7 T 31-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BRM88_09190 4649934a68d63c121b191c72588ac420 652 SUPERFAMILY SSF52058 200 422 5.33E-33 T 31-10-2018 BRM88_09190 4649934a68d63c121b191c72588ac420 652 Pfam PF00560 Leucine Rich Repeat 400 419 0.3 T 31-10-2018 IPR001611 Leucine-rich repeat GO:0005515 BRM88_09190 4649934a68d63c121b191c72588ac420 652 SMART SM00369 397 421 6.4 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_09190 4649934a68d63c121b191c72588ac420 652 SMART SM00369 303 326 23.0 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_09190 4649934a68d63c121b191c72588ac420 652 SMART SM00369 247 270 4.5 T 31-10-2018 IPR003591 Leucine-rich repeat, typical subtype BRM88_09190 4649934a68d63c121b191c72588ac420 652 Gene3D G3DSA:3.80.10.10 139 449 4.3E-86 T 31-10-2018 IPR032675 Leucine-rich repeat domain superfamily BRM88_15450 4b09ce02cdac60a1c1c9b6c934b9a909 129 SUPERFAMILY SSF54593 3 128 8.19E-25 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_15450 4b09ce02cdac60a1c1c9b6c934b9a909 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 122 4.5E-10 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_15450 4b09ce02cdac60a1c1c9b6c934b9a909 129 Gene3D G3DSA:3.10.180.10 1 129 8.2E-38 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 SUPERFAMILY SSF53623 5 293 2.62E-83 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 TIGRFAM TIGR01499 folC: bifunctional protein FolC 26 426 1.2E-92 T 31-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 Gene3D G3DSA:3.90.190.20 296 431 1.6E-25 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 SUPERFAMILY SSF53244 296 428 7.51E-27 T 31-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 PIRSF PIRSF001563 1 431 2.9E-98 T 31-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 Gene3D G3DSA:3.40.1190.10 1 295 3.8E-87 T 31-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BRM88_19645 de375950b0de7b0ccded3ced0e71314f 432 Pfam PF08245 Mur ligase middle domain 48 272 3.1E-9 T 31-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BRM88_05600 bea53167e3c34b98b68887b585171909 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 245 3.3E-97 T 31-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 BRM88_05600 bea53167e3c34b98b68887b585171909 246 Gene3D G3DSA:3.40.50.720 1 246 2.3E-71 T 31-10-2018 BRM88_05600 bea53167e3c34b98b68887b585171909 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 244 1.2E-51 T 31-10-2018 BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.5E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 SUPERFAMILY SSF51735 4 245 5.72E-66 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_05600 bea53167e3c34b98b68887b585171909 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 0.0032 T 31-10-2018 BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_05600 bea53167e3c34b98b68887b585171909 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.4E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_18690 61432205d82f718c7512b5bd7598762c 320 Gene3D G3DSA:3.90.1580.10 36 317 2.3E-46 T 31-10-2018 BRM88_18690 61432205d82f718c7512b5bd7598762c 320 SUPERFAMILY SSF56436 53 263 3.14E-45 T 31-10-2018 IPR016187 C-type lectin fold BRM88_18690 61432205d82f718c7512b5bd7598762c 320 Pfam PF03781 Sulfatase-modifying factor enzyme 1 51 252 7.6E-38 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 BRM88_09540 98e25e2c78cd3f1c749fb6888ca9868f 187 Pfam PF01292 Prokaryotic cytochrome b561 8 179 5.7E-32 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BRM88_09540 98e25e2c78cd3f1c749fb6888ca9868f 187 SUPERFAMILY SSF81342 5 182 1.26E-37 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BRM88_09540 98e25e2c78cd3f1c749fb6888ca9868f 187 Gene3D G3DSA:1.20.950.20 2 76 1.9E-5 T 31-10-2018 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 SUPERFAMILY SSF81271 279 360 1.77E-34 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Gene3D G3DSA:1.10.150.300 113 200 8.3E-149 T 31-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 SUPERFAMILY SSF52540 3 301 3.74E-82 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 5.0E-34 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 5.0E-34 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 5.0E-34 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.0E-34 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Pfam PF01926 50S ribosome-binding GTPase 5 128 3.1E-22 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.31 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Gene3D G3DSA:3.40.50.300 4 278 8.3E-149 T 31-10-2018 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 PIRSF PIRSF006641 1 363 1.4E-152 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.2E-37 T 31-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.6E-154 T 31-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BRM88_19225 252cab85a30c1b9739a02e20b2775daf 363 Gene3D G3DSA:3.10.20.30 48 361 8.3E-149 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 Hamap MF_00158 Pantothenate synthetase [panC]. 3 280 38.135 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 Gene3D G3DSA:3.30.1300.10 180 280 2.3E-26 T 31-10-2018 BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 Pfam PF02569 Pantoate-beta-alanine ligase 4 278 3.3E-94 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 Gene3D G3DSA:3.40.50.620 1 179 6.3E-69 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 SUPERFAMILY SSF52374 3 279 8.3E-99 T 31-10-2018 BRM88_12525 adbd2ff7ccfa6ecfb1ea59fa52b3908b 280 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 278 1.1E-86 T 31-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BRM88_08255 4bba06ccdb64bf094a49831f35b2706d 293 SUPERFAMILY SSF48452 42 130 9.07E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_08255 4bba06ccdb64bf094a49831f35b2706d 293 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 12 258 2.5E-79 T 31-10-2018 IPR017689 Outer membrane protein assembly factor BamD BRM88_08255 4bba06ccdb64bf094a49831f35b2706d 293 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 10 252 34.917 T 31-10-2018 IPR017689 Outer membrane protein assembly factor BamD BRM88_08255 4bba06ccdb64bf094a49831f35b2706d 293 Pfam PF13525 Outer membrane lipoprotein 40 244 3.0E-57 T 31-10-2018 IPR039565 Outer membrane lipoprotein BamD-like BRM88_08255 4bba06ccdb64bf094a49831f35b2706d 293 Gene3D G3DSA:1.25.40.10 41 261 7.6E-54 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_04045 7726b6a51aa8ce1ab893bc9e263c60cd 370 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 130 366 1.2E-70 T 31-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BRM88_04045 7726b6a51aa8ce1ab893bc9e263c60cd 370 Pfam PF02405 Permease MlaE 154 362 1.8E-67 T 31-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.47 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 Gene3D G3DSA:3.30.572.10 1 264 3.7E-130 T 31-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 31-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 84 6.1E-42 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 5.6E-97 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 SUPERFAMILY SSF55831 3 264 1.57E-128 T 31-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 Pfam PF00303 Thymidylate synthase 3 264 2.2E-122 T 31-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 3.5E-49 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 3.5E-49 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 3.5E-49 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.5E-49 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_20030 408ccfed9811fe703d504f1659afd169 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 3.5E-49 T 31-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BRM88_07120 99beb2be61404f911ab3214e962653a1 286 Pfam PF07722 Peptidase C26 11 245 7.7E-42 T 31-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 BRM88_07120 99beb2be61404f911ab3214e962653a1 286 SUPERFAMILY SSF52317 9 268 7.57E-29 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_07120 99beb2be61404f911ab3214e962653a1 286 Gene3D G3DSA:3.40.50.880 7 278 1.5E-50 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 Pfam PF13602 Zinc-binding dehydrogenase 195 337 1.7E-20 T 31-10-2018 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 340 3.8E-137 T 31-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 SUPERFAMILY SSF50129 9 140 1.4E-31 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 Gene3D G3DSA:3.90.180.10 29 336 2.6E-104 T 31-10-2018 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 Gene3D G3DSA:3.40.50.720 129 278 2.6E-104 T 31-10-2018 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 91 9.3E-9 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 SMART SM00829 16 337 2.3E-12 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_19740 7bcfc1bc59c6c6a9cee7091246069655 340 SUPERFAMILY SSF51735 118 289 1.25E-35 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06770 2101fdcc19a71101e36e688b4c274a88 356 Pfam PF03060 Nitronate monooxygenase 19 344 4.3E-59 T 31-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 BRM88_06770 2101fdcc19a71101e36e688b4c274a88 356 Gene3D G3DSA:3.20.20.70 8 355 8.7E-84 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_06770 2101fdcc19a71101e36e688b4c274a88 356 SUPERFAMILY SSF51412 13 335 1.13E-46 T 31-10-2018 BRM88_12280 8de6ced23e9268c3a3ed9a79336e23e2 126 SMART SM00448 7 115 4.6E-4 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12280 8de6ced23e9268c3a3ed9a79336e23e2 126 Pfam PF00072 Response regulator receiver domain 9 84 7.8E-5 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12280 8de6ced23e9268c3a3ed9a79336e23e2 126 SUPERFAMILY SSF52172 5 120 3.27E-17 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_12280 8de6ced23e9268c3a3ed9a79336e23e2 126 Gene3D G3DSA:3.40.50.2300 5 125 4.3E-30 T 31-10-2018 BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 PIRSF PIRSF004555 1 106 4.5E-35 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 SUPERFAMILY SSF82607 9 100 6.28E-31 T 31-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 102 1.2E-31 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 Gene3D G3DSA:3.30.1310.10 1 106 6.0E-41 T 31-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 3 95 21.543 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BRM88_05400 d1a9ba5e3851e5c8cc9f4e177a01caca 106 Pfam PF02575 YbaB/EbfC DNA-binding family 9 96 7.6E-32 T 31-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Gene3D G3DSA:1.10.730.20 656 935 1.1E-82 T 31-10-2018 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 4.3E-7 T 31-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 3 934 20.936 T 31-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Pfam PF08264 Anticodon-binding domain of tRNA 701 856 6.1E-27 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Gene3D G3DSA:3.90.740.10 196 426 3.1E-217 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 858 7.4E-266 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 SUPERFAMILY SSF50677 205 421 3.4E-42 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 SUPERFAMILY SSF52374 5 662 1.61E-131 T 31-10-2018 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Gene3D G3DSA:3.40.50.620 26 645 3.1E-217 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 SUPERFAMILY SSF47323 668 934 1.12E-67 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 29 657 2.5E-193 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 59 70 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 577 586 1.9E-30 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 240 263 1.9E-30 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 52 63 1.9E-30 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 419 434 1.9E-30 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_08415 c2eec6fd5833a678527df326f49f9f58 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 544 557 1.9E-30 T 31-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 61 708 1.6E-84 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 152 1.9E-17 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 691 708 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 Gene3D G3DSA:2.40.170.20 162 708 5.0E-100 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 Gene3D G3DSA:2.170.130.10 40 161 1.4E-32 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 Pfam PF00593 TonB dependent receptor 238 707 1.3E-48 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_10400 0da25858a7614989ce1ad202c2069a76 708 SUPERFAMILY SSF56935 22 708 8.43E-112 T 31-10-2018 BRM88_17080 ed890b3eeba8defa21a7c1f2f8767a5d 180 SUPERFAMILY SSF54523 14 149 9.42E-19 T 31-10-2018 BRM88_17080 ed890b3eeba8defa21a7c1f2f8767a5d 180 Pfam PF12019 Type II transport protein GspH 51 164 1.3E-18 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 BRM88_17080 ed890b3eeba8defa21a7c1f2f8767a5d 180 Gene3D G3DSA:3.30.700.10 12 178 9.3E-9 T 31-10-2018 BRM88_12980 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_12980 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_14185 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_14185 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16335 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_16335 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_01395 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_01395 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_22290 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_22290 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_05070 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_05070 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_18295 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_18295 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13285 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_13285 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16525 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_16525 213c8bf9ba923bd5d959505b0f1808bb 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SUPERFAMILY SSF55785 142 271 2.09E-26 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00448 554 672 2.3E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00091 30 103 120.0 T 31-10-2018 IPR000014 PAS domain BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00091 157 225 4.2E-7 T 31-10-2018 IPR000014 PAS domain BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 412 524 4.1E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Gene3D G3DSA:1.10.287.130 270 363 1.3E-19 T 31-10-2018 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 502 3.1E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 477 3.1E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 463 3.1E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 PRINTS PR00344 Bacterial sensor protein C-terminal signature 509 522 3.1E-16 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SUPERFAMILY SSF52172 552 676 2.7E-32 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SUPERFAMILY SSF55785 57 153 1.48E-10 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00388 300 366 5.6E-15 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 278 7.5E-15 T 31-10-2018 IPR000014 PAS domain BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Gene3D G3DSA:3.30.450.20 152 269 6.4E-24 T 31-10-2018 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Gene3D G3DSA:3.30.565.10 365 528 6.1E-46 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Gene3D G3DSA:3.40.50.12740 553 680 6.9E-32 T 31-10-2018 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Pfam PF00512 His Kinase A (phospho-acceptor) domain 301 363 2.4E-14 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Gene3D G3DSA:3.30.450.20 29 151 5.0E-16 T 31-10-2018 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00086 231 273 3.5E-6 T 31-10-2018 IPR001610 PAC motif BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Pfam PF08448 PAS fold 168 275 2.4E-13 T 31-10-2018 IPR013656 PAS fold-4 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SUPERFAMILY SSF47384 286 363 1.55E-16 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SUPERFAMILY SSF55874 355 527 1.44E-47 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Pfam PF13188 PAS domain 32 92 0.032 T 31-10-2018 IPR000014 PAS domain BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 Pfam PF00072 Response regulator receiver domain 557 673 9.1E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03480 9f3091bbd9e478f23703e8965541fc3e 680 SMART SM00387 412 525 2.9E-42 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_05645 ffdb8a525a34d12ae489ae739bff5ef4 212 Pfam PF00248 Aldo/keto reductase family 95 174 5.3E-14 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_05645 ffdb8a525a34d12ae489ae739bff5ef4 212 SUPERFAMILY SSF51430 10 184 1.61E-22 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_05645 ffdb8a525a34d12ae489ae739bff5ef4 212 Gene3D G3DSA:3.20.20.100 9 86 3.6E-13 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_05645 ffdb8a525a34d12ae489ae739bff5ef4 212 Gene3D G3DSA:3.20.20.100 87 193 1.1E-20 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_23725 a2f7262354ac9ac53b6cb4ac38d13ecb 144 Gene3D G3DSA:2.60.200.60 8 89 7.8E-17 T 31-10-2018 BRM88_23725 a2f7262354ac9ac53b6cb4ac38d13ecb 144 Pfam PF05488 PAAR motif 12 82 2.9E-23 T 31-10-2018 IPR008727 PAAR motif BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 36 118 4.2E-13 T 31-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 SUPERFAMILY SSF49503 126 308 2.39E-53 T 31-10-2018 IPR008972 Cupredoxin BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 207 255 - T 31-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 108 128 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 96 108 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 130 149 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 182 203 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 244 261 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 206 226 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 226 243 3.0E-41 T 31-10-2018 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 134 261 1.1E-38 T 31-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 SUPERFAMILY SSF81464 36 128 1.14E-22 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 Gene3D G3DSA:2.60.40.420 131 275 1.5E-54 T 31-10-2018 IPR008972 Cupredoxin BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 52 271 1.8E-58 T 31-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22120 0eab59c94df99616a86e9eec2266f138 317 Gene3D G3DSA:1.10.287.90 35 129 1.2E-23 T 31-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Gene3D G3DSA:3.40.50.2300 1 129 2.5E-34 T 31-10-2018 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 SMART SM00448 5 116 6.4E-34 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 SMART SM00382 160 303 3.0E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 SUPERFAMILY SSF46689 354 462 3.72E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Gene3D G3DSA:3.40.50.300 133 310 4.1E-60 T 31-10-2018 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Pfam PF00072 Response regulator receiver domain 8 114 9.2E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 SUPERFAMILY SSF52172 4 183 3.84E-42 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Pfam PF02954 Bacterial regulatory protein, Fis family 420 460 1.2E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Gene3D G3DSA:1.10.10.60 403 463 5.7E-16 T 31-10-2018 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 463 2.1E-10 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 426 443 2.1E-10 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Pfam PF00158 Sigma-54 interaction domain 141 306 4.0E-66 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 Gene3D G3DSA:1.10.8.60 311 387 5.6E-21 T 31-10-2018 BRM88_08220 cc93adcb941b157297df4a8258c1a2fb 463 SUPERFAMILY SSF52540 141 382 8.79E-66 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 228 339 7.1E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 SUPERFAMILY SSF55785 10 69 3.14E-6 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 Gene3D G3DSA:3.30.565.10 187 339 2.3E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 123 182 3.7E-13 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 SMART SM00387 228 341 4.0E-28 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 SUPERFAMILY SSF47384 119 182 3.73E-11 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 SMART SM00388 122 189 3.7E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 SUPERFAMILY SSF55874 192 338 1.07E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 Gene3D G3DSA:1.10.287.130 127 184 9.1E-13 T 31-10-2018 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 302 320 2.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 273 287 2.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_23835 06fbe685f7138364bc5dda438a0d29bd 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 338 2.1E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_23570 de93a64d32b3c38e15efada17f53b941 344 Gene3D G3DSA:2.115.10.20 2 336 3.1E-93 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_23570 de93a64d32b3c38e15efada17f53b941 344 SUPERFAMILY SSF75005 9 330 6.0E-55 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_23570 de93a64d32b3c38e15efada17f53b941 344 Pfam PF04616 Glycosyl hydrolases family 43 84 329 4.4E-23 T 31-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 Gene3D G3DSA:3.40.350.10 8 176 9.4E-57 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 SUPERFAMILY SSF53092 6 179 3.66E-57 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 Pfam PF00557 Metallopeptidase family M24 186 417 1.3E-61 T 31-10-2018 IPR000994 Peptidase M24 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 SMART SM01011 7 141 6.2E-68 T 31-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 Gene3D G3DSA:3.90.230.10 177 445 3.1E-94 T 31-10-2018 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 Pfam PF05195 Aminopeptidase P, N-terminal domain 12 131 5.0E-40 T 31-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 PRINTS PR00599 Methionine aminopeptidase-1 signature 257 273 1.9E-5 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 PRINTS PR00599 Methionine aminopeptidase-1 signature 375 387 1.9E-5 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_05780 c95e8a32254dce08839eca25c5d92bd3 446 SUPERFAMILY SSF55920 180 441 7.72E-82 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like BRM88_10970 89ceca4109f6f883f5d1edc0c3755eb3 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.1E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10970 89ceca4109f6f883f5d1edc0c3755eb3 321 SMART SM01126 137 282 2.9E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10970 89ceca4109f6f883f5d1edc0c3755eb3 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 SMART SM00388 292 349 1.3E-4 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 494 4.7E-20 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 SUPERFAMILY SSF55874 345 495 7.2E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 Gene3D G3DSA:3.30.565.10 357 497 1.4E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 SMART SM00387 388 497 1.2E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 SMART SM00304 239 291 5.5E-5 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 436 8.2E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 475 8.2E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 494 8.2E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 450 8.2E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 SUPERFAMILY SSF47384 276 347 3.34E-9 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_20655 b27938e6efd9d5a50883f3e29e4cd0d5 499 Gene3D G3DSA:1.10.287.130 243 351 2.5E-15 T 31-10-2018 BRM88_23980 a8675e29c641586abce7e8e1d3885bac 281 Gene3D G3DSA:3.40.50.300 4 279 3.9E-54 T 31-10-2018 BRM88_23980 a8675e29c641586abce7e8e1d3885bac 281 Pfam PF00005 ABC transporter 36 193 3.7E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_23980 a8675e29c641586abce7e8e1d3885bac 281 SUPERFAMILY SSF52540 16 257 7.44E-48 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23980 a8675e29c641586abce7e8e1d3885bac 281 SMART SM00382 45 250 6.4E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_04080 b0b5ae6492ceb8cbf137f8fde7e14f8d 157 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 16 147 3.5E-42 T 31-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 BRM88_04080 b0b5ae6492ceb8cbf137f8fde7e14f8d 157 Pfam PF00583 Acetyltransferase (GNAT) family 20 125 3.0E-14 T 31-10-2018 IPR000182 GNAT domain BRM88_04080 b0b5ae6492ceb8cbf137f8fde7e14f8d 157 SUPERFAMILY SSF55729 9 150 8.78E-36 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_04080 b0b5ae6492ceb8cbf137f8fde7e14f8d 157 Gene3D G3DSA:3.40.630.30 7 153 1.3E-45 T 31-10-2018 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 SUPERFAMILY SSF64263 1 119 3.66E-50 T 31-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 Gene3D G3DSA:3.90.1030.10 1 117 6.5E-46 T 31-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.193 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 Pfam PF01196 Ribosomal protein L17 20 116 1.1E-32 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 4.5E-46 T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_18990 245802e961753b40a5362c89d9cab0ea 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 31-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 Pfam PF01047 MarR family 41 94 7.1E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 SMART SM00347 29 130 2.4E-16 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 Gene3D G3DSA:1.10.10.10 2 146 1.9E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 69 103 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 SUPERFAMILY SSF46785 10 145 1.55E-27 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 1.4E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 1.4E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_10430 d5e93eaaf2e94275b8b3d7d97347e4b0 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 1.4E-11 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 Pfam PF12914 SH3 domain of SH3b2 type 216 265 3.6E-5 T 31-10-2018 IPR026864 SH3b2-type SH3 domain BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 SUPERFAMILY SSF54001 305 419 4.32E-17 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 PIRSF PIRSF019015 3 465 3.5E-72 T 31-10-2018 IPR027017 Uncharacterised peptidase with NlpC/P60 domain, YkfC type BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 Pfam PF00877 NlpC/P60 family 326 408 9.7E-10 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 Pfam PF12913 SH3 domain (SH3b1 type) 161 206 3.2E-17 T 31-10-2018 IPR039439 SH3b1 domain BRM88_21875 3a26dd9246c383d3b9514e00b68ebf25 470 Gene3D G3DSA:3.90.1720.10 299 463 2.5E-32 T 31-10-2018 BRM88_06595 070a7a68aaa3ac2e68bf4e5326fec515 191 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 11 185 9.0E-47 T 31-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BRM88_06595 070a7a68aaa3ac2e68bf4e5326fec515 191 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 186 6.1E-40 T 31-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related BRM88_06595 070a7a68aaa3ac2e68bf4e5326fec515 191 Gene3D G3DSA:2.60.450.10 61 191 4.9E-12 T 31-10-2018 BRM88_06595 070a7a68aaa3ac2e68bf4e5326fec515 191 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 2 188 21.908 T 31-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 Pfam PF00005 ABC transporter 18 164 8.8E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 SMART SM00382 26 214 2.7E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 213 234 7.4E-6 T 31-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 Gene3D G3DSA:3.40.50.300 2 239 1.5E-68 T 31-10-2018 BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 2 239 9.4E-115 T 31-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 BRM88_06585 7bd75c37be7eb882f8f7308d4705a337 239 SUPERFAMILY SSF52540 2 235 1.27E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 PIRSF PIRSF001549 1 462 2.0E-139 T 31-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 Gene3D G3DSA:3.40.50.800 368 463 3.8E-22 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 465 28.42 T 31-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 SUPERFAMILY SSF52954 369 460 6.87E-20 T 31-10-2018 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 SUPERFAMILY SSF55681 4 363 5.18E-72 T 31-10-2018 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 451 1.2E-120 T 31-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 Pfam PF13393 Histidyl-tRNA synthetase 90 353 1.4E-27 T 31-10-2018 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 Gene3D G3DSA:3.30.930.10 1 366 2.9E-106 T 31-10-2018 BRM88_11715 3ffe79a09231ab858776bb841a6f0fc7 470 Pfam PF03129 Anticodon binding domain 372 459 2.1E-12 T 31-10-2018 IPR004154 Anticodon-binding BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 Gene3D G3DSA:3.40.50.720 2 245 3.0E-72 T 31-10-2018 BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 1.3E-6 T 31-10-2018 BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 SUPERFAMILY SSF51735 8 244 4.28E-69 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.9E-40 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 2.7E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.7E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.7E-11 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02275 73dfba34bf28abd11fec2464fd6393e8 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 244 6.5E-49 T 31-10-2018 BRM88_24360 6b71347dc07167e00a98b78218535557 106 Pfam PF08850 Domain of unknown function (DUF1820) 5 100 4.3E-37 T 31-10-2018 IPR014949 Protein of unknown function DUF1820 BRM88_24360 6b71347dc07167e00a98b78218535557 106 PIRSF PIRSF028538 1 106 5.2E-50 T 31-10-2018 IPR014949 Protein of unknown function DUF1820 BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 30 257 2.2E-58 T 31-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 54.933 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 SUPERFAMILY SSF52402 6 210 1.52E-69 T 31-10-2018 BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 PIRSF PIRSF002936 2 302 4.9E-147 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 Gene3D G3DSA:3.40.50.620 7 212 2.0E-61 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_18060 f96a393d6b3c6d42357d103e750d038f 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 1.4E-148 T 31-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 6 832 0.0 T 31-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Pfam PF00271 Helicase conserved C-terminal domain 210 329 3.0E-15 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Gene3D G3DSA:3.40.50.300 182 346 2.0E-51 T 31-10-2018 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Gene3D G3DSA:1.20.120.1080 369 457 5.5E-9 T 31-10-2018 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 PIRSF PIRSF005496 1 833 0.0 T 31-10-2018 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Pfam PF04408 Helicase associated domain (HA2) 386 449 1.1E-15 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 SMART SM00490 232 330 2.4E-14 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Gene3D G3DSA:3.40.50.300 3 181 6.8E-52 T 31-10-2018 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 SMART SM00847 385 481 1.0E-10 T 31-10-2018 IPR007502 Helicase-associated domain GO:0004386 BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 SUPERFAMILY SSF52540 17 341 9.59E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 Pfam PF08482 ATP-dependent helicase C-terminal 682 819 4.0E-50 T 31-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal BRM88_24065 45bad48cad3626d5809bf83b64f1d9ff 833 SMART SM00487 4 188 1.3E-15 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 85 1.0E-36 T 31-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 19.251 T 31-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 SUPERFAMILY SSF51344 3 85 6.93E-23 T 31-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 Gene3D G3DSA:2.60.15.10 1 139 2.0E-36 T 31-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 SUPERFAMILY SSF46604 87 135 8.89E-9 T 31-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 83 2.2E-27 T 31-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03665 0a6aff787e391b330ae07411f2b6ab43 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 132 2.2E-41 T 31-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_11730 72f1f60af7fbf5b0a8bd73c355a82736 108 Pfam PF01371 Trp repressor protein 16 100 3.1E-27 T 31-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 BRM88_11730 72f1f60af7fbf5b0a8bd73c355a82736 108 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 17 98 1.0E-13 T 31-10-2018 IPR013368 TrpR homologue YerC/YecD BRM88_11730 72f1f60af7fbf5b0a8bd73c355a82736 108 PIRSF PIRSF012508 5 106 5.3E-27 T 31-10-2018 IPR013368 TrpR homologue YerC/YecD BRM88_11730 72f1f60af7fbf5b0a8bd73c355a82736 108 Gene3D G3DSA:1.10.1270.10 8 107 9.4E-28 T 31-10-2018 IPR038116 TrpR-like superfamily BRM88_11730 72f1f60af7fbf5b0a8bd73c355a82736 108 SUPERFAMILY SSF48295 17 100 8.37E-23 T 31-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 SUPERFAMILY SSF143865 12 236 1.7E-27 T 31-10-2018 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 Pfam PF01544 CorA-like Mg2+ transporter protein 16 299 1.2E-49 T 31-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 Gene3D G3DSA:3.30.460.20 2 108 1.1E-5 T 31-10-2018 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 Gene3D G3DSA:1.20.58.340 246 303 5.3E-15 T 31-10-2018 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 SUPERFAMILY SSF144083 238 300 4.32E-17 T 31-10-2018 BRM88_21490 a5efdec8e48b31ae7a7b5271f3c25df6 303 Gene3D G3DSA:1.20.58.340 114 244 8.2E-6 T 31-10-2018 BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 210 221 4.1E-21 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 222 237 4.1E-21 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 199 209 4.1E-21 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 142 159 4.1E-21 T 31-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 18 123 4.6E-27 T 31-10-2018 IPR010627 Peptidase A24A, N-terminal BRM88_08175 abf8da8c490afd987876554ee1c3a638 287 Pfam PF01478 Type IV leader peptidase family 133 241 1.8E-23 T 31-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 BRM88_13180 904fbbb0c65bd20d06c0fc1515e5eba2 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.187 T 31-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BRM88_13180 904fbbb0c65bd20d06c0fc1515e5eba2 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 1.3E-80 T 31-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BRM88_13180 904fbbb0c65bd20d06c0fc1515e5eba2 210 SUPERFAMILY SSF53271 3 206 8.52E-63 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_13180 904fbbb0c65bd20d06c0fc1515e5eba2 210 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 5.8E-63 T 31-10-2018 BRM88_13180 904fbbb0c65bd20d06c0fc1515e5eba2 210 Gene3D G3DSA:3.40.50.2020 1 208 6.2E-69 T 31-10-2018 BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 Gene3D G3DSA:1.10.8.300 222 336 7.6E-34 T 31-10-2018 BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 SMART SM00382 51 192 0.0062 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 SUPERFAMILY SSF52540 25 311 3.09E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 54 184 1.0E-62 T 31-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 Gene3D G3DSA:3.40.50.300 15 221 4.0E-49 T 31-10-2018 BRM88_05945 3fa17f7b155f7ead65999d953ef22fee 339 PIRSF PIRSF002849 9 339 3.3E-125 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 475 2.7E-151 T 31-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BRM88_10630 64fa4246d033908afb116919605a72d9 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 357 465 1.0E-36 T 31-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BRM88_10630 64fa4246d033908afb116919605a72d9 478 Gene3D G3DSA:3.50.50.60 5 343 3.9E-104 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_10630 64fa4246d033908afb116919605a72d9 478 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 31-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BRM88_10630 64fa4246d033908afb116919605a72d9 478 Gene3D G3DSA:3.30.390.30 356 478 3.2E-45 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 353 374 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 440 460 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 318 325 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 418 433 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 289 2.6E-72 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 2.4E-35 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 303 325 2.4E-35 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.4E-35 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 274 290 2.4E-35 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.4E-35 T 31-10-2018 BRM88_10630 64fa4246d033908afb116919605a72d9 478 SUPERFAMILY SSF55424 354 475 4.47E-42 T 31-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BRM88_10630 64fa4246d033908afb116919605a72d9 478 SUPERFAMILY SSF51905 1 347 4.67E-57 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_10630 64fa4246d033908afb116919605a72d9 478 PIRSF PIRSF000350 1 476 1.6E-73 T 31-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BRM88_10630 64fa4246d033908afb116919605a72d9 478 Gene3D G3DSA:3.50.50.60 163 288 3.9E-104 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_10630 64fa4246d033908afb116919605a72d9 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 338 3.1E-63 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 263 44.959 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 7.1E-6 T 31-10-2018 IPR001451 Hexapeptide repeat BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 Gene3D G3DSA:2.160.10.10 2 189 1.5E-50 T 31-10-2018 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 Gene3D G3DSA:1.20.1180.10 198 263 1.1E-21 T 31-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 2.7E-25 T 31-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 SUPERFAMILY SSF51161 2 262 1.28E-72 T 31-10-2018 IPR011004 Trimeric LpxA-like superfamily BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 PIRSF PIRSF000456 5 263 4.7E-98 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 BRM88_10250 1451f19060cd267e54e37a141fde75d2 263 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 261 6.2E-103 T 31-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 BRM88_11380 17bbf7ead61184e5fc69a8c3daf675fa 392 Gene3D G3DSA:1.25.40.10 33 173 1.1E-17 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_11380 17bbf7ead61184e5fc69a8c3daf675fa 392 SUPERFAMILY SSF81901 44 277 4.45E-17 T 31-10-2018 BRM88_11380 17bbf7ead61184e5fc69a8c3daf675fa 392 Gene3D G3DSA:1.25.40.10 174 336 3.2E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_11380 17bbf7ead61184e5fc69a8c3daf675fa 392 Pfam PF13432 Tetratricopeptide repeat 116 169 0.0014 T 31-10-2018 BRM88_11380 17bbf7ead61184e5fc69a8c3daf675fa 392 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 9 390 35.065 T 31-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 BRM88_15635 07f98efbbdb5322d87d991935ec0abbc 249 PIRSF PIRSF000507 3 240 2.8E-85 T 31-10-2018 IPR002648 Adenylate dimethylallyltransferase GO:0004161|GO:0009058 KEGG: 00908+2.5.1.27|MetaCyc: PWY-2681 BRM88_15635 07f98efbbdb5322d87d991935ec0abbc 249 SUPERFAMILY SSF52540 6 113 1.76E-10 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15635 07f98efbbdb5322d87d991935ec0abbc 249 Gene3D G3DSA:1.10.287.890 127 228 2.6E-32 T 31-10-2018 BRM88_15635 07f98efbbdb5322d87d991935ec0abbc 249 Gene3D G3DSA:3.40.50.300 3 126 2.2E-47 T 31-10-2018 BRM88_15635 07f98efbbdb5322d87d991935ec0abbc 249 Pfam PF01745 Isopentenyl transferase 5 234 1.6E-91 T 31-10-2018 IPR002648 Adenylate dimethylallyltransferase GO:0004161|GO:0009058 KEGG: 00908+2.5.1.27|MetaCyc: PWY-2681 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 24 108 4.3E-20 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 Pfam PF00128 Alpha amylase, catalytic domain 201 310 3.3E-13 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 Gene3D G3DSA:2.60.40.10 8 151 1.8E-50 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 18 705 0.0 T 31-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 SUPERFAMILY SSF51011 599 707 3.69E-24 T 31-10-2018 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 Gene3D G3DSA:3.20.20.80 152 592 8.0E-176 T 31-10-2018 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 SMART SM00642 173 578 3.7E-10 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 SUPERFAMILY SSF81296 18 161 5.04E-48 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 SUPERFAMILY SSF51445 148 587 1.37E-137 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_17830 55db5aaba94656c2c6ba9b20acc1cb44 710 Gene3D G3DSA:2.60.40.1180 598 705 5.4E-14 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 298 721 2.8E-144 T 31-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 31 897 9.4E-153 T 31-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 SMART SM00481 31 98 6.2E-11 T 31-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 Pfam PF14579 Helix-hairpin-helix motif 801 897 1.0E-20 T 31-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 30 1065 13.042 T 31-10-2018 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 Pfam PF02811 PHP domain 32 124 2.2E-12 T 31-10-2018 IPR004013 PHP domain GO:0003824 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 SUPERFAMILY SSF89550 30 217 1.83E-9 T 31-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BRM88_18320 f0f7e129c3a1c9165c181ff7f8c5c043 1065 Gene3D G3DSA:3.20.20.140 7 276 3.1E-49 T 31-10-2018 BRM88_06950 584a522338257aaa34d93ae0edffe5a0 589 Pfam PF06276 Ferric iron reductase FhuF-like transporter 409 568 2.3E-34 T 31-10-2018 IPR022770 Ferric iron reductase FhuF domain BRM88_06950 584a522338257aaa34d93ae0edffe5a0 589 Pfam PF04183 IucA / IucC family 150 379 9.5E-42 T 31-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 BRM88_06950 584a522338257aaa34d93ae0edffe5a0 589 Gene3D G3DSA:1.10.150.640 17 136 6.2E-7 T 31-10-2018 BRM88_06950 584a522338257aaa34d93ae0edffe5a0 589 Gene3D G3DSA:3.10.450.440 36 98 6.2E-7 T 31-10-2018 BRM88_06950 584a522338257aaa34d93ae0edffe5a0 589 Gene3D G3DSA:1.10.510.40 371 549 7.6E-22 T 31-10-2018 BRM88_11610 e1a850efbb94dafc77e0f82889048436 243 Gene3D G3DSA:1.20.144.10 135 236 4.0E-24 T 31-10-2018 BRM88_11610 e1a850efbb94dafc77e0f82889048436 243 Gene3D G3DSA:1.20.144.10 44 134 1.4E-5 T 31-10-2018 BRM88_11610 e1a850efbb94dafc77e0f82889048436 243 SUPERFAMILY SSF48317 31 228 4.19E-37 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BRM88_11610 e1a850efbb94dafc77e0f82889048436 243 Pfam PF01569 PAP2 superfamily 108 217 1.3E-18 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_11610 e1a850efbb94dafc77e0f82889048436 243 SMART SM00014 104 213 3.7E-17 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_09740 18e1e26b58b930a2f73574ebd00a5a27 250 Pfam PF01048 Phosphorylase superfamily 8 242 1.1E-36 T 31-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BRM88_09740 18e1e26b58b930a2f73574ebd00a5a27 250 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 54 94 - T 31-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 BRM88_09740 18e1e26b58b930a2f73574ebd00a5a27 250 SUPERFAMILY SSF53167 7 248 9.35E-72 T 31-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BRM88_09740 18e1e26b58b930a2f73574ebd00a5a27 250 Gene3D G3DSA:3.40.50.1580 2 250 6.0E-75 T 31-10-2018 BRM88_09740 18e1e26b58b930a2f73574ebd00a5a27 250 Hamap MF_01963 S-methyl-5'-thioadenosine phosphorylase [mtnP]. 6 250 32.754 T 31-10-2018 IPR010044 Methylthioadenosine phosphorylase (MTAP) GO:0017061 Reactome: R-HSA-1237112|Reactome: R-HSA-8950505 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 Gene3D G3DSA:3.40.47.10 256 400 9.9E-55 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 246 7.6E-59 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 PIRSF PIRSF000447 1 411 4.4E-183 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 SUPERFAMILY SSF53901 3 251 4.61E-77 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 Gene3D G3DSA:3.40.47.10 1 254 1.4E-89 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 3 409 5.7E-197 T 31-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 SMART SM00825 Beta-ketoacyl synthase 5 411 2.9E-15 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 SUPERFAMILY SSF53901 213 410 2.88E-73 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site BRM88_04460 f14a7e8df0c08011c9aa884b34574050 411 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 3.6E-38 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 36 90 3.0E-12 T 31-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 Gene3D G3DSA:1.10.60.10 93 153 2.2E-24 T 31-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 SMART SM00529 54 152 1.9E-32 T 31-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 Gene3D G3DSA:1.10.10.10 22 92 6.1E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 93 149 4.1E-13 T 31-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 BRM88_11500 fe921adb628380c3fb89f7671b3ea327 155 SUPERFAMILY SSF46785 47 121 4.23E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Gene3D G3DSA:2.60.40.3470 29 160 1.6E-34 T 31-10-2018 BRM88_05920 1520b08bec45a68b48e864fd87741184 649 PRINTS PR00811 Bacterial general secretion pathway protein D signature 630 644 1.0E-16 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_05920 1520b08bec45a68b48e864fd87741184 649 PRINTS PR00811 Bacterial general secretion pathway protein D signature 474 498 1.0E-16 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_05920 1520b08bec45a68b48e864fd87741184 649 PRINTS PR00811 Bacterial general secretion pathway protein D signature 607 625 1.0E-16 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_05920 1520b08bec45a68b48e864fd87741184 649 PRINTS PR00811 Bacterial general secretion pathway protein D signature 371 381 1.0E-16 T 31-10-2018 IPR001775 GspD/PilQ family BRM88_05920 1520b08bec45a68b48e864fd87741184 649 SMART SM00965 211 259 2.0E-10 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Gene3D G3DSA:3.30.1370.120 284 370 1.1E-9 T 31-10-2018 IPR038591 NolW-like superfamily BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Pfam PF03958 Bacterial type II/III secretion system short domain 286 371 1.2E-14 T 31-10-2018 IPR005644 NolW-like BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Gene3D G3DSA:3.55.50.30 169 283 8.2E-39 T 31-10-2018 BRM88_05920 1520b08bec45a68b48e864fd87741184 649 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 588 621 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BRM88_05920 1520b08bec45a68b48e864fd87741184 649 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 186 642 5.7E-158 T 31-10-2018 IPR013355 Type IV pilus secretin PilQ BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Pfam PF07660 Secretin and TonB N terminus short domain 212 258 2.7E-8 T 31-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BRM88_05920 1520b08bec45a68b48e864fd87741184 649 Pfam PF00263 Bacterial type II and III secretion system protein 478 643 8.9E-50 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 218 5.7E-67 T 31-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 299 17.666 T 31-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 245 299 1.8E-11 T 31-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 180 1.2E-48 T 31-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 240 3.2E-16 T 31-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 SUPERFAMILY SSF88697 244 300 1.17E-6 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 SUPERFAMILY SSF55120 9 223 6.33E-72 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_17190 9e16dac5de57dd02f9f694a0f56b613f 308 Gene3D G3DSA:3.30.2350.10 2 242 4.3E-80 T 31-10-2018 BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 Pfam PF01464 Transglycosylase SLT domain 198 305 3.1E-22 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 SUPERFAMILY SSF53955 195 341 2.16E-34 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 Gene3D G3DSA:1.10.530.10 194 337 2.4E-31 T 31-10-2018 BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 SUPERFAMILY SSF54106 477 522 4.19E-7 T 31-10-2018 BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 Pfam PF01476 LysM domain 479 522 3.1E-10 T 31-10-2018 IPR018392 LysM domain BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 Gene3D G3DSA:3.10.350.10 467 525 1.7E-11 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_17440 1cbb9d7ad15a144efb8b4df322e9759d 527 SMART SM00257 478 523 2.6E-10 T 31-10-2018 IPR018392 LysM domain BRM88_11300 8ac8d54d9b48dfa8fe2bbf0b97b26cf3 456 Pfam PF13416 Bacterial extracellular solute-binding protein 44 353 5.4E-42 T 31-10-2018 IPR006059 Bacterial extracellular solute-binding protein BRM88_11300 8ac8d54d9b48dfa8fe2bbf0b97b26cf3 456 SUPERFAMILY SSF53850 28 408 4.62E-87 T 31-10-2018 BRM88_11300 8ac8d54d9b48dfa8fe2bbf0b97b26cf3 456 Gene3D G3DSA:3.40.190.10 43 370 1.9E-147 T 31-10-2018 BRM88_11300 8ac8d54d9b48dfa8fe2bbf0b97b26cf3 456 Gene3D G3DSA:3.40.190.10 143 407 1.9E-147 T 31-10-2018 BRM88_02965 8e97a4ea4354fa4c0004383b06b5ac77 424 Pfam PF06271 RDD family 222 369 1.8E-21 T 31-10-2018 IPR010432 RDD BRM88_02965 8e97a4ea4354fa4c0004383b06b5ac77 424 Pfam PF14237 Domain of unknown function (DUF4339) 4 48 4.4E-15 T 31-10-2018 IPR025640 Domain of unknown function DUF4339 Reactome: R-HSA-6798695 BRM88_02965 8e97a4ea4354fa4c0004383b06b5ac77 424 SUPERFAMILY SSF55277 2 51 4.32E-5 T 31-10-2018 IPR035445 GYF-like domain superfamily BRM88_21190 3aef730fa4c1feedc0022a80ea510124 161 PIRSF PIRSF018472 1 160 3.9E-51 T 31-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type BRM88_21190 3aef730fa4c1feedc0022a80ea510124 161 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 6 151 1.8E-33 T 31-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BRM88_21190 3aef730fa4c1feedc0022a80ea510124 161 Pfam PF04093 rod shape-determining protein MreD 3 152 4.3E-34 T 31-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 SUPERFAMILY SSF56176 351 435 3.27E-23 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Pfam PF00571 CBS domain 292 340 2.5E-6 T 31-10-2018 IPR000644 CBS domain BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Gene3D G3DSA:3.30.465.10 344 437 2.7E-33 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Pfam PF01595 Domain of unknown function DUF21 5 207 1.9E-46 T 31-10-2018 IPR002550 CNNM, transmembrane domain BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Pfam PF03471 Transporter associated domain 358 436 5.1E-20 T 31-10-2018 IPR005170 Transporter-associated domain BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 SMART SM01091 356 437 1.9E-31 T 31-10-2018 IPR005170 Transporter-associated domain BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 SUPERFAMILY SSF54631 209 341 1.3E-25 T 31-10-2018 BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Gene3D G3DSA:3.90.1280.20 230 294 7.0E-41 T 31-10-2018 BRM88_15860 52c4db64359f38b4e0dba0ed357874ad 446 Gene3D G3DSA:3.10.580.10 192 336 7.0E-41 T 31-10-2018 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 Pfam PF01555 DNA methylase 85 378 2.0E-46 T 31-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 SUPERFAMILY SSF53335 60 388 6.75E-66 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 PIRSF PIRSF015855 2 542 2.3E-148 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 335 357 1.5E-19 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 358 372 1.5E-19 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 85 97 1.5E-19 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 BRM88_22470 384d917067854772cf8cf5fc7ecb2b42 543 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 126 145 1.5E-19 T 31-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 PIRSF PIRSF006769 8 367 1.7E-121 T 31-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 Pfam PF01872 RibD C-terminal domain 156 359 8.5E-45 T 31-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 Gene3D G3DSA:3.40.430.10 150 368 9.5E-67 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 SUPERFAMILY SSF53927 12 153 7.79E-47 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 155 363 1.1E-53 T 31-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 108 3.2E-18 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 16 360 5.4E-113 T 31-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 Gene3D G3DSA:3.40.140.10 4 149 1.9E-44 T 31-10-2018 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 SUPERFAMILY SSF53597 154 362 2.1E-56 T 31-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BRM88_20565 015ed5c5da0e41b8ae0d77ba96488293 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 59 97 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Gene3D G3DSA:3.30.70.1660 287 361 1.7E-11 T 31-10-2018 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Gene3D G3DSA:3.30.160.20 214 286 7.0E-35 T 31-10-2018 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 SMART SM00937 63 178 4.1E-63 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Gene3D G3DSA:3.30.70.1660 107 213 5.4E-44 T 31-10-2018 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Pfam PF03462 PCRF domain 13 203 1.6E-70 T 31-10-2018 IPR005139 Peptide chain release factor GO:0006415 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 SUPERFAMILY SSF75620 12 354 1.12E-129 T 31-10-2018 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 358 39.861 T 31-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 3 358 5.9E-154 T 31-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BRM88_19270 10ef5f54cc8c48955e2335bec0d81427 361 Pfam PF00472 RF-1 domain 212 321 2.6E-41 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 306 323 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 272 289 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 338 355 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 443 459 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 197 215 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 PRINTS PR00744 Glycosyl hydrolase family 37 signature 520 533 8.4E-42 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 SUPERFAMILY SSF48208 45 536 6.26E-157 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 ProSitePatterns PS00928 Trehalase signature 2. 450 459 - T 31-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 ProSitePatterns PS00927 Trehalase signature 1. 155 168 - T 31-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 Hamap MF_01060 Periplasmic trehalase [treA]. 1 538 83.91 T 31-10-2018 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 Gene3D G3DSA:1.50.10.10 44 549 1.5E-173 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_21470 960c6675e82c9ebadbcdd20684340929 557 Pfam PF01204 Trehalase 62 536 3.1E-169 T 31-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 31-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 Gene3D G3DSA:3.40.50.1240 1 212 2.2E-58 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 SMART SM00855 2 158 5.1E-22 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 SUPERFAMILY SSF53254 1 203 3.01E-54 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 PIRSF PIRSF000709 1 185 8.7E-13 T 31-10-2018 BRM88_19655 6b9686c05e5750db4a98589b758f19fe 214 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 198 5.2E-57 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 PIRSF PIRSF006809 3 424 1.4E-142 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 199 358 2.1E-12 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Pfam PF01926 50S ribosome-binding GTPase 200 318 9.9E-22 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 11 364 6.9E-146 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 SUPERFAMILY SSF52540 199 364 2.19E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Pfam PF13167 GTP-binding GTPase N-terminal 26 112 1.3E-30 T 31-10-2018 IPR025121 GTPase HflX, N-terminal BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Gene3D G3DSA:3.40.50.11060 21 138 7.5E-38 T 31-10-2018 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Gene3D G3DSA:3.40.50.300 198 369 2.0E-41 T 31-10-2018 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 1.5E-12 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.5E-12 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 1.5E-12 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Pfam PF16360 GTP-binding GTPase Middle Region 114 193 8.9E-27 T 31-10-2018 IPR032305 GTP-binding protein, middle domain BRM88_15705 ea3b2f9740baa474c6ab0dda840b589d 439 Hamap MF_00900 GTPase HflX [hflX]. 27 394 47.868 T 31-10-2018 IPR016496 GTPase HflX GO:0005525 BRM88_05965 293135f71a5754914b81ff42c61776a6 600 Pfam PF13519 von Willebrand factor type A domain 102 209 5.7E-11 T 31-10-2018 IPR002035 von Willebrand factor, type A BRM88_05965 293135f71a5754914b81ff42c61776a6 600 SUPERFAMILY SSF53300 99 276 3.24E-19 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BRM88_05965 293135f71a5754914b81ff42c61776a6 600 SMART SM00028 389 422 5.3E-7 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_05965 293135f71a5754914b81ff42c61776a6 600 Gene3D G3DSA:1.25.40.10 351 458 1.1E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05965 293135f71a5754914b81ff42c61776a6 600 SMART SM00327 99 288 5.2E-9 T 31-10-2018 IPR002035 von Willebrand factor, type A BRM88_05965 293135f71a5754914b81ff42c61776a6 600 SUPERFAMILY SSF48452 364 437 4.34E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05965 293135f71a5754914b81ff42c61776a6 600 Pfam PF00515 Tetratricopeptide repeat 391 421 7.2E-10 T 31-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 BRM88_05965 293135f71a5754914b81ff42c61776a6 600 Gene3D G3DSA:3.40.50.410 91 282 4.0E-33 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 536 8.6E-120 T 31-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 SUPERFAMILY SSF52540 336 552 6.59E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 SMART SM00382 368 560 1.6E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 SUPERFAMILY SSF90123 7 330 1.44E-32 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 Gene3D G3DSA:1.20.1560.10 3 330 4.5E-20 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 Gene3D G3DSA:3.40.50.300 334 558 2.0E-61 T 31-10-2018 BRM88_13975 8775f4a3367f3f9e699fb00d85ff2280 561 Pfam PF00005 ABC transporter 359 506 8.0E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 ProSitePatterns PS00449 ATP synthase a subunit signature. 196 205 - T 31-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 Hamap MF_01393 ATP synthase subunit a [atpB]. 12 266 14.999 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 32 260 8.9E-42 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 Gene3D G3DSA:1.20.120.220 87 266 8.9E-52 T 31-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 Pfam PF00119 ATP synthase A chain 39 260 6.6E-55 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 SUPERFAMILY SSF81336 88 260 4.97E-39 T 31-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 PRINTS PR00123 ATP synthase A subunit signature 246 261 1.0E-12 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 PRINTS PR00123 ATP synthase A subunit signature 96 112 1.0E-12 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03630 43906372652b56cdfe152a160c7dffc7 266 PRINTS PR00123 ATP synthase A subunit signature 193 215 1.0E-12 T 31-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_10315 69eef1919a816158224992554baafd35 267 Gene3D G3DSA:1.10.287.610 103 150 2.7E-87 T 31-10-2018 BRM88_10315 69eef1919a816158224992554baafd35 267 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 2.2E-98 T 31-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_10315 69eef1919a816158224992554baafd35 267 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 39.788 T 31-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_10315 69eef1919a816158224992554baafd35 267 Pfam PF00318 Ribosomal protein S2 9 224 5.6E-90 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 Gene3D G3DSA:3.40.50.10490 8 219 2.7E-87 T 31-10-2018 BRM88_10315 69eef1919a816158224992554baafd35 267 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 31-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 196 210 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 175 186 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 6 24 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 87 104 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 158 175 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 PRINTS PR00395 Ribosomal protein S2 signature 37 46 7.1E-36 T 31-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_10315 69eef1919a816158224992554baafd35 267 SUPERFAMILY SSF52313 6 229 4.58E-89 T 31-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily BRM88_10315 69eef1919a816158224992554baafd35 267 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 31-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Pfam PF02607 B12 binding domain 325 397 4.6E-27 T 31-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 SMART SM01018 322 405 5.0E-45 T 31-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 SUPERFAMILY SSF52242 411 563 6.28E-44 T 31-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Gene3D G3DSA:3.40.50.280 412 564 3.9E-54 T 31-10-2018 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Gene3D G3DSA:1.10.288.10 606 782 1.1E-132 T 31-10-2018 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 SUPERFAMILY SSF51717 23 297 5.89E-87 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Pfam PF02310 B12 binding domain 417 507 2.5E-19 T 31-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 SUPERFAMILY SSF56507 571 917 5.89E-128 T 31-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Gene3D G3DSA:3.20.20.20 7 310 1.4E-129 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Gene3D G3DSA:1.10.1240.10 314 402 2.6E-39 T 31-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 SUPERFAMILY SSF47644 317 404 8.5E-29 T 31-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 PIRSF PIRSF000381 1 885 0.0 T 31-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 TIGRFAM TIGR02082 metH: methionine synthase 4 882 0.0 T 31-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Pfam PF00809 Pterin binding enzyme 27 265 1.3E-60 T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 608 898 3.7E-121 T 31-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_10795 3d54707f371620e75f0bdb217a8dc54c 917 Gene3D G3DSA:3.10.196.10 577 912 1.1E-132 T 31-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_15095 d8d8a16cc7b6b2262fd5909f97a0d3ee 102 Gene3D G3DSA:3.30.750.24 1 96 1.4E-9 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_15095 d8d8a16cc7b6b2262fd5909f97a0d3ee 102 Pfam PF13466 STAS domain 4 82 2.3E-14 T 31-10-2018 IPR002645 STAS domain BRM88_15095 d8d8a16cc7b6b2262fd5909f97a0d3ee 102 SUPERFAMILY SSF52091 3 88 6.28E-11 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_06920 3571e7389d6319e77fb56c6dd77e7b66 173 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 167 1.3E-57 T 31-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 BRM88_06920 3571e7389d6319e77fb56c6dd77e7b66 173 PIRSF PIRSF006135 1 171 5.6E-52 T 31-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 BRM88_06920 3571e7389d6319e77fb56c6dd77e7b66 173 SUPERFAMILY SSF52540 3 169 5.79E-53 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06920 3571e7389d6319e77fb56c6dd77e7b66 173 Gene3D G3DSA:3.40.50.300 3 169 3.6E-55 T 31-10-2018 BRM88_08265 593833bc652bb19956cc2c622306c46c 268 SUPERFAMILY SSF64438 5 266 1.81E-74 T 31-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BRM88_08265 593833bc652bb19956cc2c622306c46c 268 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 23 265 5.5E-73 T 31-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BRM88_08265 593833bc652bb19956cc2c622306c46c 268 Gene3D G3DSA:3.60.140.10 1 268 5.6E-81 T 31-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily BRM88_08265 593833bc652bb19956cc2c622306c46c 268 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 33 266 9.7E-53 T 31-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 Pfam PF03167 Uracil DNA glycosylase superfamily 61 214 3.8E-24 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 Gene3D G3DSA:3.40.470.10 1 234 3.6E-93 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 64 73 - T 31-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 SUPERFAMILY SSF52141 9 228 3.05E-89 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 SMART SM00986 56 216 1.0E-40 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 12 219 3.3E-77 T 31-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 11 227 39.19 T 31-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_22845 b00a41faf5f717fc91ede48e143732c4 241 SMART SM00987 56 216 1.0E-40 T 31-10-2018 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 Gene3D G3DSA:1.10.10.10 3 93 6.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 Pfam PF03466 LysR substrate binding domain 90 288 6.9E-23 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 Gene3D G3DSA:3.40.190.10 95 167 7.2E-15 T 31-10-2018 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 SUPERFAMILY SSF46785 3 85 5.01E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.4E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.5E-22 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 Gene3D G3DSA:3.40.190.10 168 256 7.2E-15 T 31-10-2018 BRM88_11440 c5435c2286bd1f56f00e9d8f1cac228c 296 SUPERFAMILY SSF53850 91 288 8.53E-25 T 31-10-2018 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 Hamap MF_01971 Kynurenine 3-monooxygenase [kmo]. 6 445 27.324 T 31-10-2018 IPR027545 Kynurenine 3-monooxygenase GO:0004502|GO:0006569|GO:0019805 KEGG: 00380+1.14.13.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7765|Reactome: R-HSA-71240 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 328 1.0E-17 T 31-10-2018 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 1.0E-17 T 31-10-2018 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 312 1.0E-17 T 31-10-2018 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 1.0E-17 T 31-10-2018 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 Gene3D G3DSA:3.50.50.60 8 384 1.4E-116 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 Pfam PF01494 FAD binding domain 11 333 2.0E-22 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 BRM88_12860 939f4bfad7a9218f39518b794814e0ba 455 SUPERFAMILY SSF51905 12 391 3.37E-51 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 Pfam PF01632 Ribosomal protein L35 2 62 9.9E-25 T 31-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 SUPERFAMILY SSF143034 2 64 3.4E-23 T 31-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 2.9E-18 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.9E-18 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 2.9E-18 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 31-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 18.741 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 9.7E-26 T 31-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BRM88_17035 b5aa576b98d1d5e292a5ff9fb685cd9b 65 Gene3D G3DSA:2.40.50.530 1 64 4.1E-22 T 31-10-2018 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 4.7E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 4.7E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 4.7E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 4.7E-23 T 31-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 Pfam PF00557 Metallopeptidase family M24 12 242 1.3E-56 T 31-10-2018 IPR000994 Peptidase M24 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 42.224 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 250 7.5E-100 T 31-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 SUPERFAMILY SSF55920 5 250 1.83E-95 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like BRM88_10350 c0601f36ddf5033451d88f9233e2f842 258 Gene3D G3DSA:3.90.230.10 2 257 1.7E-113 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Gene3D G3DSA:2.40.50.230 343 459 4.5E-32 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 SUPERFAMILY SSF69255 349 455 2.88E-22 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Gene3D G3DSA:3.55.50.10 77 173 3.7E-74 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 2 509 2.6E-72 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Gene3D G3DSA:3.30.1920.30 205 267 3.7E-74 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 2 508 1.5E-85 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Pfam PF05954 Phage late control gene D protein (GPD) 9 311 1.5E-70 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 SUPERFAMILY SSF69279 184 349 6.63E-15 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 485 589 2.1E-29 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Gene3D G3DSA:2.30.110.50 3 310 3.7E-74 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 SUPERFAMILY SSF69279 2 169 4.02E-44 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 SUPERFAMILY SSF69349 445 508 4.08E-5 T 31-10-2018 BRM88_18650 e5f209261ba8dced6bcbc342c1a1a8cd 873 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 639 787 3.8E-46 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_05470 a5b51def11f14b26c0308a5168f5cca5 248 Pfam PF01670 Glycosyl hydrolase family 12 59 240 6.2E-18 T 31-10-2018 IPR002594 Glycoside hydrolase family 12 GO:0000272|GO:0008810 BRM88_05470 a5b51def11f14b26c0308a5168f5cca5 248 Gene3D G3DSA:2.60.120.180 13 247 1.1E-46 T 31-10-2018 IPR013319 Glycoside hydrolase family 11/12 GO:0004553 MetaCyc: PWY-6717|MetaCyc: PWY-6784 BRM88_05470 a5b51def11f14b26c0308a5168f5cca5 248 SUPERFAMILY SSF49899 19 241 5.88E-48 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BRM88_05755 9e4d8d75875c7976f80206f50dc06ef5 196 PIRSF PIRSF006806 1 187 1.9E-28 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BRM88_05755 9e4d8d75875c7976f80206f50dc06ef5 196 Gene3D G3DSA:3.40.50.10420 4 195 1.6E-44 T 31-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BRM88_05755 9e4d8d75875c7976f80206f50dc06ef5 196 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 6 184 1.1E-45 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BRM88_05755 9e4d8d75875c7976f80206f50dc06ef5 196 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 184 4.6E-30 T 31-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BRM88_05755 9e4d8d75875c7976f80206f50dc06ef5 196 SUPERFAMILY SSF100950 4 190 1.0E-47 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_18450 9ec249738e78b519dca19d7b21056658 509 Pfam PF02384 N-6 DNA Methylase 146 471 6.1E-109 T 31-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 Pfam PF12161 HsdM N-terminal domain 8 123 1.7E-26 T 31-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain BRM88_18450 9ec249738e78b519dca19d7b21056658 509 Gene3D G3DSA:1.20.1260.30 3 136 3.5E-45 T 31-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily BRM88_18450 9ec249738e78b519dca19d7b21056658 509 SUPERFAMILY SSF53335 6 508 9.95E-138 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_18450 9ec249738e78b519dca19d7b21056658 509 Gene3D G3DSA:3.40.50.150 146 454 2.6E-114 T 31-10-2018 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 266 278 1.5E-19 T 31-10-2018 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 169 185 1.5E-19 T 31-10-2018 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 192 206 1.5E-19 T 31-10-2018 BRM88_18450 9ec249738e78b519dca19d7b21056658 509 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 300 324 1.5E-19 T 31-10-2018 BRM88_03020 73b85f6d58cfd041bf29097f484d161f 352 PIRSF PIRSF028458 1 352 1.1E-180 T 31-10-2018 IPR016886 Predicted glycerophosphotransferase UCP028458 BRM88_03020 73b85f6d58cfd041bf29097f484d161f 352 SUPERFAMILY SSF53756 8 319 5.76E-32 T 31-10-2018 BRM88_03020 73b85f6d58cfd041bf29097f484d161f 352 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 180 314 9.0E-8 T 31-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BRM88_09335 395ff6d2bdde40239067c866ab719614 561 SMART SM00812 87 509 1.8E-218 T 31-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09335 395ff6d2bdde40239067c866ab719614 561 Gene3D G3DSA:3.20.20.80 83 449 2.2E-127 T 31-10-2018 BRM88_09335 395ff6d2bdde40239067c866ab719614 561 Gene3D G3DSA:2.60.40.1180 450 560 5.1E-28 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_09335 395ff6d2bdde40239067c866ab719614 561 Pfam PF01120 Alpha-L-fucosidase 82 445 1.0E-99 T 31-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09335 395ff6d2bdde40239067c866ab719614 561 SUPERFAMILY SSF51445 87 449 6.53E-107 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09335 395ff6d2bdde40239067c866ab719614 561 Pfam PF16757 Alpha-L-fucosidase C-terminal domain 480 554 5.6E-6 T 31-10-2018 IPR031919 Alpha-L-fucosidase, C-terminal KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09335 395ff6d2bdde40239067c866ab719614 561 PIRSF PIRSF001092 70 553 1.2E-88 T 31-10-2018 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Gene3D G3DSA:3.40.50.720 1 195 1.2E-53 T 31-10-2018 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Gene3D G3DSA:1.10.1040.10 196 312 2.5E-14 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Gene3D G3DSA:3.90.226.10 472 689 2.2E-26 T 31-10-2018 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 SUPERFAMILY SSF51735 7 193 2.42E-40 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 SUPERFAMILY SSF48179 193 312 3.49E-19 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 195 294 1.5E-9 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 SUPERFAMILY SSF52096 474 787 2.71E-37 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 10 192 7.6E-41 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 Pfam PF00378 Enoyl-CoA hydratase/isomerase 487 619 8.3E-16 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_13360 f615c8f3dae9ff0a330c2749df39736c 790 SUPERFAMILY SSF48179 345 458 6.29E-17 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_08835 fb642eb930f72cc1e4e7230c46054a35 187 Gene3D G3DSA:2.60.220.40 85 155 8.7E-10 T 31-10-2018 BRM88_08835 fb642eb930f72cc1e4e7230c46054a35 187 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 113 1.5E-35 T 31-10-2018 IPR006531 Gp5 N-terminal BRM88_08835 fb642eb930f72cc1e4e7230c46054a35 187 Gene3D G3DSA:2.40.50.230 2 83 5.0E-25 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_08835 fb642eb930f72cc1e4e7230c46054a35 187 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 5 184 1.1E-55 T 31-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 BRM88_09195 1d0f73419d4a949584442045d5d9298c 367 Pfam PF13088 BNR repeat-like domain 61 337 5.8E-90 T 31-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 BRM88_09195 1d0f73419d4a949584442045d5d9298c 367 Gene3D G3DSA:2.120.10.10 37 358 1.6E-32 T 31-10-2018 BRM88_09195 1d0f73419d4a949584442045d5d9298c 367 SUPERFAMILY SSF50939 36 354 7.52E-64 T 31-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 BRM88_23935 6ce3e053d2fca7a51dc78ba53c3ce525 206 SUPERFAMILY SSF47413 8 65 2.15E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_23935 6ce3e053d2fca7a51dc78ba53c3ce525 206 TIGRFAM TIGR03070 couple_hipB: transcriptional regulator, y4mF family 9 65 2.0E-24 T 31-10-2018 IPR017507 Transcription regulator, HipB-like BRM88_23935 6ce3e053d2fca7a51dc78ba53c3ce525 206 Pfam PF13560 Helix-turn-helix domain 11 64 8.6E-10 T 31-10-2018 BRM88_23935 6ce3e053d2fca7a51dc78ba53c3ce525 206 SMART SM00530 13 68 3.7E-9 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_23935 6ce3e053d2fca7a51dc78ba53c3ce525 206 Gene3D G3DSA:1.10.260.40 1 73 8.8E-14 T 31-10-2018 BRM88_19035 ba0c82e8d4dae4fcbdf1a8a16b6c8370 119 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 4 119 25.673 T 31-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19035 ba0c82e8d4dae4fcbdf1a8a16b6c8370 119 SUPERFAMILY SSF53137 5 117 2.4E-48 T 31-10-2018 BRM88_19035 ba0c82e8d4dae4fcbdf1a8a16b6c8370 119 Gene3D G3DSA:3.30.420.100 3 119 1.5E-40 T 31-10-2018 BRM88_19035 ba0c82e8d4dae4fcbdf1a8a16b6c8370 119 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 5 119 3.9E-36 T 31-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19035 ba0c82e8d4dae4fcbdf1a8a16b6c8370 119 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 4 119 1.9E-37 T 31-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 SUPERFAMILY SSF54862 2 83 2.0E-23 T 31-10-2018 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 Gene3D G3DSA:3.30.70.20 2 94 6.9E-30 T 31-10-2018 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 Pfam PF00037 4Fe-4S binding domain 34 56 3.5E-7 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.6E-16 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.6E-16 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.6E-16 T 31-10-2018 IPR000813 7Fe ferredoxin GO:0009055 BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 1.3E-18 T 31-10-2018 IPR022569 Ferredoxin, C-terminal BRM88_15540 d1f65a9b3c00504c1a61318bc32a433f 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_16275 7dc65aa6c610faa9fb344d4da76c8961 165 Pfam PF14441 OTT_1508-like deaminase 105 163 1.5E-10 T 31-10-2018 IPR027796 OTT_1508-like deaminase BRM88_16275 7dc65aa6c610faa9fb344d4da76c8961 165 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 106 141 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 1.7E-12 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 1.7E-12 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 1.7E-12 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 134 7.3E-39 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 22.986 T 31-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 31-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 SUPERFAMILY SSF81330 12 129 1.96E-35 T 31-10-2018 IPR036019 Gated mechanosensitive channel BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 133 2.6E-43 T 31-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L BRM88_17980 108a3f3bb23dd61af25620ad41103fca 140 Gene3D G3DSA:1.10.1200.120 3 136 9.3E-41 T 31-10-2018 IPR036019 Gated mechanosensitive channel BRM88_02880 493dc04efa2881ad36e4228f0cb6ae55 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_02880 493dc04efa2881ad36e4228f0cb6ae55 439 SUPERFAMILY SSF53098 18 403 4.48E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_12975 2f8dd199f409d00d767b676a9bd5bbf0 182 Pfam PF00484 Carbonic anhydrase 2 146 1.8E-42 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_12975 2f8dd199f409d00d767b676a9bd5bbf0 182 SMART SM00947 1 150 4.9E-40 T 31-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BRM88_12975 2f8dd199f409d00d767b676a9bd5bbf0 182 SUPERFAMILY SSF53056 2 160 2.62E-46 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BRM88_12975 2f8dd199f409d00d767b676a9bd5bbf0 182 Gene3D G3DSA:3.40.1050.10 1 158 6.9E-52 T 31-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BRM88_02555 b1e337ff5b679a904f9244a95281659b 406 Gene3D G3DSA:1.20.1250.20 210 399 1.5E-9 T 31-10-2018 BRM88_02555 b1e337ff5b679a904f9244a95281659b 406 SUPERFAMILY SSF103473 4 402 8.5E-33 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_02555 b1e337ff5b679a904f9244a95281659b 406 Gene3D G3DSA:1.20.1250.20 1 191 3.5E-13 T 31-10-2018 BRM88_02555 b1e337ff5b679a904f9244a95281659b 406 Pfam PF07690 Major Facilitator Superfamily 24 357 9.0E-22 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_13405 c5a990fccb11010b8d042c0c12ef9237 209 SUPERFAMILY SSF89392 24 205 5.1E-44 T 31-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX BRM88_13405 c5a990fccb11010b8d042c0c12ef9237 209 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 5 204 1.9E-21 T 31-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BRM88_13405 c5a990fccb11010b8d042c0c12ef9237 209 Gene3D G3DSA:2.50.20.10 20 206 2.1E-47 T 31-10-2018 BRM88_13405 c5a990fccb11010b8d042c0c12ef9237 209 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 8 207 31.412 T 31-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BRM88_13405 c5a990fccb11010b8d042c0c12ef9237 209 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 197 3.7E-53 T 31-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SUPERFAMILY SSF141868 577 823 3.92E-82 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 396 558 1.8E-35 T 31-10-2018 IPR000160 GGDEF domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SUPERFAMILY SSF55785 291 396 6.98E-12 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 556 8.0E-43 T 31-10-2018 IPR000160 GGDEF domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SUPERFAMILY SSF55073 404 562 8.63E-45 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Gene3D G3DSA:3.30.450.20 14 131 3.2E-29 T 31-10-2018 BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Pfam PF00563 EAL domain 577 811 5.1E-65 T 31-10-2018 IPR001633 EAL domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Pfam PF08447 PAS fold 40 129 2.0E-21 T 31-10-2018 IPR013655 PAS fold-3 GO:0005515 BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00091 147 214 22.0 T 31-10-2018 IPR000014 PAS domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00091 17 85 1.1E-5 T 31-10-2018 IPR000014 PAS domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Gene3D G3DSA:3.20.20.450 571 825 1.6E-90 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Gene3D G3DSA:3.30.70.270 393 565 9.3E-50 T 31-10-2018 BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00052 570 816 2.1E-103 T 31-10-2018 IPR001633 EAL domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Gene3D G3DSA:3.30.450.20 290 392 3.4E-10 T 31-10-2018 BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SUPERFAMILY SSF55785 134 261 1.2E-10 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SUPERFAMILY SSF55785 23 136 9.6E-21 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 18 142 7.5E-11 T 31-10-2018 IPR000014 PAS domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 289 394 3.0E-6 T 31-10-2018 IPR000014 PAS domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00267 388 560 7.2E-55 T 31-10-2018 IPR000160 GGDEF domain BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00086 92 135 7.0E-7 T 31-10-2018 IPR001610 PAC motif BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00086 347 388 0.0012 T 31-10-2018 IPR001610 PAC motif BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 SMART SM00086 222 263 170.0 T 31-10-2018 IPR001610 PAC motif BRM88_13485 7549bb92e9f6296131bc07a7f7be4c08 838 Gene3D G3DSA:3.30.450.20 138 261 1.1E-11 T 31-10-2018 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 SMART SM00382 166 309 1.6E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 SUPERFAMILY SSF52540 146 390 8.32E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Gene3D G3DSA:3.40.50.2300 5 133 3.5E-33 T 31-10-2018 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 10 469 1.4E-221 T 31-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 31-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Pfam PF00072 Response regulator receiver domain 10 117 6.2E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 SUPERFAMILY SSF46689 400 468 5.82E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Gene3D G3DSA:3.40.50.300 134 316 2.4E-63 T 31-10-2018 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Pfam PF00158 Sigma-54 interaction domain 146 312 3.4E-68 T 31-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Pfam PF02954 Bacterial regulatory protein, Fis family 431 468 2.7E-9 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Gene3D G3DSA:1.10.10.60 392 469 5.2E-16 T 31-10-2018 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 SUPERFAMILY SSF52172 9 190 4.7E-37 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 SMART SM00448 8 120 6.4E-30 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 Gene3D G3DSA:1.10.8.60 317 391 1.7E-20 T 31-10-2018 BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 31-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BRM88_23830 43c4894950d2316937a8c9bafb1d2dd2 475 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 31-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 TIGRFAM TIGR03440 egtB_TIGR03440: ergothioneine biosynthesis protein EgtB 18 423 1.5E-163 T 31-10-2018 IPR017806 Ergothioneine biosynthesis protein EgtB GO:0052699 KEGG: 00340+1.14.99.50|MetaCyc: PWY-7255 BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 SUPERFAMILY SSF56436 189 426 8.1E-62 T 31-10-2018 IPR016187 C-type lectin fold BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 Pfam PF12867 DinB superfamily 22 152 4.8E-6 T 31-10-2018 IPR024775 DinB-like domain BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 Pfam PF03781 Sulfatase-modifying factor enzyme 1 344 424 8.3E-7 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 Pfam PF03781 Sulfatase-modifying factor enzyme 1 205 339 4.2E-22 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 Gene3D G3DSA:3.90.1580.10 189 340 1.4E-26 T 31-10-2018 BRM88_23950 fda1dff4c47fb672427a6a5f4c0a2b95 427 Gene3D G3DSA:3.90.1580.10 341 427 1.1E-9 T 31-10-2018 BRM88_01890 5a497ea7b409c79af2ad839e34fc262e 337 Gene3D G3DSA:2.60.120.1660 3 276 8.2E-48 T 31-10-2018 BRM88_01890 5a497ea7b409c79af2ad839e34fc262e 337 Pfam PF13621 Cupin-like domain 18 260 7.1E-56 T 31-10-2018 BRM88_01890 5a497ea7b409c79af2ad839e34fc262e 337 SUPERFAMILY SSF51197 8 318 7.14E-56 T 31-10-2018 BRM88_01890 5a497ea7b409c79af2ad839e34fc262e 337 SMART SM00558 100 272 1.3E-5 T 31-10-2018 IPR003347 JmjC domain BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 362 611 4.4E-58 T 31-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 SMART SM01217 644 712 1.2E-15 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_12455 02a0e35a38b77e76294635be97a025db 729 PRINTS PR00133 Glycosyl hydrolase family 3 signature 186 202 6.8E-27 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 PRINTS PR00133 Glycosyl hydrolase family 3 signature 109 128 6.8E-27 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 PRINTS PR00133 Glycosyl hydrolase family 3 signature 79 95 6.8E-27 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 PRINTS PR00133 Glycosyl hydrolase family 3 signature 256 274 6.8E-27 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 PRINTS PR00133 Glycosyl hydrolase family 3 signature 155 171 6.8E-27 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Gene3D G3DSA:3.20.20.300 9 334 3.2E-99 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Pfam PF14310 Fibronectin type III-like domain 645 711 7.5E-13 T 31-10-2018 IPR026891 Fibronectin type III-like domain BRM88_12455 02a0e35a38b77e76294635be97a025db 729 SUPERFAMILY SSF52279 362 614 4.32E-51 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 SUPERFAMILY SSF51445 22 345 4.74E-84 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Gene3D G3DSA:2.60.40.10 614 728 7.2E-22 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Gene3D G3DSA:3.40.50.1700 351 613 8.4E-70 T 31-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BRM88_12455 02a0e35a38b77e76294635be97a025db 729 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 79 327 1.2E-38 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 SMART SM00091 7 75 1.5E-4 T 31-10-2018 IPR000014 PAS domain BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 Pfam PF08448 PAS fold 13 119 4.4E-22 T 31-10-2018 IPR013656 PAS fold-4 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 Pfam PF12833 Helix-turn-helix domain 153 229 1.2E-22 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 SMART SM00342 146 228 4.1E-23 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 Gene3D G3DSA:3.30.450.20 6 128 2.8E-17 T 31-10-2018 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 SUPERFAMILY SSF46689 129 177 2.06E-6 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 SUPERFAMILY SSF46689 182 229 1.79E-12 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 SUPERFAMILY SSF55785 9 118 7.33E-15 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 Gene3D G3DSA:1.10.10.60 129 234 1.5E-28 T 31-10-2018 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 197 212 4.2E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 212 228 4.2E-7 T 31-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BRM88_18240 755c41a144e3e48eb5096e42cb9e7278 241 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 183 224 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BRM88_10065 aadcf976874fc969cd5e8aedaf76c0d6 198 Gene3D G3DSA:1.20.1440.100 15 87 1.1E-29 T 31-10-2018 BRM88_10065 aadcf976874fc969cd5e8aedaf76c0d6 198 SUPERFAMILY SSF56784 2 188 2.16E-20 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_10065 aadcf976874fc969cd5e8aedaf76c0d6 198 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 184 6.1E-26 T 31-10-2018 BRM88_10065 aadcf976874fc969cd5e8aedaf76c0d6 198 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 187 3.5E-20 T 31-10-2018 BRM88_10065 aadcf976874fc969cd5e8aedaf76c0d6 198 Gene3D G3DSA:3.40.50.1000 3 189 1.1E-29 T 31-10-2018 IPR023214 HAD superfamily BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 29.832 T 31-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 96 6.9E-48 T 31-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 5.3E-32 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 SMART SM00411 3 92 1.0E-42 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 8.2E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 8.2E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 8.2E-17 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 SUPERFAMILY SSF47729 3 92 1.91E-32 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_17015 cd12beb582a25a695fc437b78ad52108 99 Gene3D G3DSA:4.10.520.10 1 96 2.2E-37 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_14235 700cf518870a0bb32f9ecc23f2dacf14 449 Pfam PF01979 Amidohydrolase family 70 417 3.0E-65 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_14235 700cf518870a0bb32f9ecc23f2dacf14 449 Gene3D G3DSA:2.30.40.10 16 437 1.9E-169 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_14235 700cf518870a0bb32f9ecc23f2dacf14 449 SUPERFAMILY SSF51338 14 444 5.35E-24 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_14235 700cf518870a0bb32f9ecc23f2dacf14 449 SUPERFAMILY SSF51556 72 371 2.85E-95 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_14235 700cf518870a0bb32f9ecc23f2dacf14 449 Gene3D G3DSA:3.20.20.140 73 363 1.9E-169 T 31-10-2018 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SMART SM00388 110 175 5.4E-21 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SMART SM00387 222 338 1.0E-42 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Gene3D G3DSA:3.40.50.2300 491 617 1.4E-41 T 31-10-2018 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Gene3D G3DSA:1.20.120.160 644 758 1.0E-23 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Gene3D G3DSA:1.10.287.130 58 173 4.1E-23 T 31-10-2018 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SUPERFAMILY SSF47384 93 176 5.1E-20 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SMART SM00448 497 613 1.6E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Gene3D G3DSA:3.30.565.10 175 338 1.3E-55 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SUPERFAMILY SSF55874 164 336 7.6E-50 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Pfam PF00512 His Kinase A (phospho-acceptor) domain 110 174 4.0E-17 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SMART SM00073 659 753 6.4E-5 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 222 336 6.5E-33 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Pfam PF01627 Hpt domain 670 747 6.2E-13 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 298 316 8.7E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 335 8.7E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 263 277 8.7E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 291 8.7E-18 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SUPERFAMILY SSF47226 646 753 9.42E-25 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 SUPERFAMILY SSF52172 496 619 4.7E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_02615 bb9ce7001d7f9907db8eba9772badacc 769 Pfam PF00072 Response regulator receiver domain 499 611 4.0E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_02445 dad9c5fe7abbb9cdf7b55028473f33a8 279 SUPERFAMILY SSF53474 4 277 4.09E-36 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02445 dad9c5fe7abbb9cdf7b55028473f33a8 279 Gene3D G3DSA:3.40.50.1820 1 278 4.0E-38 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02445 dad9c5fe7abbb9cdf7b55028473f33a8 279 Pfam PF12146 Serine aminopeptidase, S33 21 258 8.2E-26 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 BRM88_07990 632f2f8b5512dc322dc2d3253326b2c7 80 SUPERFAMILY SSF55174 4 69 5.0E-17 T 31-10-2018 BRM88_07990 632f2f8b5512dc322dc2d3253326b2c7 80 Pfam PF13275 S4 domain 7 69 4.6E-23 T 31-10-2018 BRM88_07990 632f2f8b5512dc322dc2d3253326b2c7 80 Gene3D G3DSA:3.10.290.10 1 71 6.7E-22 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_19605 57a7733617e7b06cd8e81a7a4198b4ba 247 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 247 119.521 T 31-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 BRM88_19605 57a7733617e7b06cd8e81a7a4198b4ba 247 Gene3D G3DSA:3.60.21.10 1 243 6.3E-14 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like BRM88_19605 57a7733617e7b06cd8e81a7a4198b4ba 247 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 239 9.9E-108 T 31-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 BRM88_19605 57a7733617e7b06cd8e81a7a4198b4ba 247 Pfam PF00149 Calcineurin-like phosphoesterase 1 206 6.0E-9 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BRM88_19605 57a7733617e7b06cd8e81a7a4198b4ba 247 SUPERFAMILY SSF56300 1 229 3.65E-32 T 31-10-2018 BRM88_11195 69a7bb3fff237a26869d96e3e43217fa 136 Pfam PF03918 Cytochrome C biogenesis protein 20 133 2.8E-48 T 31-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family BRM88_11195 69a7bb3fff237a26869d96e3e43217fa 136 Gene3D G3DSA:1.10.8.640 17 99 6.0E-32 T 31-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily BRM88_01530 4e4a28d8cf3071748e549a9edee1d58f 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01530 4e4a28d8cf3071748e549a9edee1d58f 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01530 4e4a28d8cf3071748e549a9edee1d58f 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_23540 36ec3772d4b95b00fffd1c94464ae243 325 Pfam PF00331 Glycosyl hydrolase family 10 36 317 1.3E-48 T 31-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 BRM88_23540 36ec3772d4b95b00fffd1c94464ae243 325 SUPERFAMILY SSF51445 24 321 1.52E-80 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_23540 36ec3772d4b95b00fffd1c94464ae243 325 Gene3D G3DSA:3.20.20.80 22 324 1.3E-88 T 31-10-2018 BRM88_23540 36ec3772d4b95b00fffd1c94464ae243 325 SMART SM00633 58 321 2.4E-18 T 31-10-2018 IPR001000 Glycoside hydrolase family 10 domain GO:0004553|GO:0005975 MetaCyc: PWY-6717|MetaCyc: PWY-6784 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 Gene3D G3DSA:1.20.1720.10 30 237 9.0E-51 T 31-10-2018 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 Pfam PF07690 Major Facilitator Superfamily 33 427 1.2E-52 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 29 507 6.5E-154 T 31-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 PRINTS PR01036 Tetracycline resistance protein TetB signature 32 56 2.7E-5 T 31-10-2018 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 PRINTS PR01036 Tetracycline resistance protein TetB signature 153 177 2.7E-5 T 31-10-2018 BRM88_10445 2b1adee413290696c51e2b85143fbd4d 526 SUPERFAMILY SSF103473 24 511 2.49E-66 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_00415 42ccbb7e073d85daec9b0c5d8e49d501 113 SUPERFAMILY SSF69754 1 96 4.19E-9 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like BRM88_00415 42ccbb7e073d85daec9b0c5d8e49d501 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 101 1.2E-6 T 31-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BRM88_00415 42ccbb7e073d85daec9b0c5d8e49d501 113 Gene3D G3DSA:3.30.160.100 1 104 2.9E-7 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like BRM88_12800 00b78ddd95976cc91d1beb35e867b491 143 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 2 95 21.161 T 31-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_12800 00b78ddd95976cc91d1beb35e867b491 143 TIGRFAM TIGR00166 S6: ribosomal protein bS6 3 94 9.7E-32 T 31-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12800 00b78ddd95976cc91d1beb35e867b491 143 SUPERFAMILY SSF54995 1 104 1.83E-34 T 31-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12800 00b78ddd95976cc91d1beb35e867b491 143 Pfam PF01250 Ribosomal protein S6 4 92 5.1E-26 T 31-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12800 00b78ddd95976cc91d1beb35e867b491 143 Gene3D G3DSA:3.30.70.60 2 93 2.4E-29 T 31-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 389 1.7E-107 T 31-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 6 389 3.1E-132 T 31-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 Pfam PF01494 FAD binding domain 6 339 2.6E-30 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 Gene3D G3DSA:3.50.50.60 6 337 9.8E-81 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 Gene3D G3DSA:3.30.9.50 78 271 9.8E-81 T 31-10-2018 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 SUPERFAMILY SSF51905 5 380 2.59E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 8.7E-21 T 31-10-2018 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 8.7E-21 T 31-10-2018 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 8.7E-21 T 31-10-2018 BRM88_19965 ae7ab9cd571f7da5739ef504880f4dcd 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 8.7E-21 T 31-10-2018 BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 SUPERFAMILY SSF52025 153 278 1.83E-5 T 31-10-2018 BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 Gene3D G3DSA:3.40.630.10 269 548 1.7E-52 T 31-10-2018 BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 Pfam PF04389 Peptidase family M28 320 536 3.3E-50 T 31-10-2018 IPR007484 Peptidase M28 BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 SUPERFAMILY SSF53187 49 545 1.92E-63 T 31-10-2018 BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 Pfam PF02225 PA domain 154 245 1.1E-6 T 31-10-2018 IPR003137 PA domain BRM88_24390 eb86c8975f74346e759cf8929494ec5e 603 Gene3D G3DSA:3.40.630.10 44 119 1.2E-5 T 31-10-2018 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 1.6E-100 T 31-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 Gene3D G3DSA:3.20.130.10 301 488 2.5E-60 T 31-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 285 2.3E-63 T 31-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 SUPERFAMILY SSF117457 316 487 1.57E-62 T 31-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 487 1.7E-49 T 31-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 Pfam PF05683 Fumarase C-terminus 289 488 6.5E-79 T 31-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BRM88_12365 775c224f341e7994ccd8094e953a8e19 505 PIRSF PIRSF001394 1 505 3.7E-219 T 31-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 Gene3D G3DSA:3.40.50.620 17 214 1.4E-90 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 PRINTS PR00147 DNA photolyase signature 393 407 5.8E-23 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 PRINTS PR00147 DNA photolyase signature 334 350 5.8E-23 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 PRINTS PR00147 DNA photolyase signature 152 168 5.8E-23 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 PRINTS PR00147 DNA photolyase signature 354 372 5.8E-23 T 31-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 Gene3D G3DSA:1.10.579.10 302 484 3.0E-71 T 31-10-2018 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 Pfam PF03441 FAD binding domain of DNA photolyase 284 480 1.4E-78 T 31-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 SUPERFAMILY SSF48173 204 482 1.19E-100 T 31-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 Pfam PF00875 DNA photolyase 16 178 2.0E-51 T 31-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 334 346 - T 31-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 Gene3D G3DSA:1.25.40.80 143 295 1.4E-90 T 31-10-2018 BRM88_07885 b4c6c8ad99d56196af11a20d7faa727c 484 SUPERFAMILY SSF52425 14 193 6.28E-57 T 31-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 SMART SM00448 1 110 1.3E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 Gene3D G3DSA:1.10.10.10 121 233 3.7E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 SUPERFAMILY SSF46894 128 228 1.93E-21 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 Pfam PF00072 Response regulator receiver domain 1 111 2.2E-24 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 Gene3D G3DSA:3.40.50.2300 1 120 2.9E-31 T 31-10-2018 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 SUPERFAMILY SSF52172 1 118 2.56E-33 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 SMART SM00862 151 227 5.7E-21 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_16180 ed3e2252fd3c1c0a981e2f1bc9700a9e 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 227 3.3E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_23710 4d9ca99402b81060268aca49f8e949df 231 Pfam PF15648 Restriction endonuclease fold toxin 5 124 203 4.1E-14 T 31-10-2018 IPR028904 Tox-REase-5 domain BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 Gene3D G3DSA:3.40.630.10 15 352 5.6E-118 T 31-10-2018 BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 Pfam PF01546 Peptidase family M20/M25/M40 68 362 2.4E-19 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 Gene3D G3DSA:3.30.70.360 167 280 5.6E-118 T 31-10-2018 BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 SUPERFAMILY SSF53187 5 362 1.6E-34 T 31-10-2018 BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 Pfam PF07687 Peptidase dimerisation domain 164 271 2.4E-14 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain BRM88_14080 e468c4e1e68f2cb19cc3214975a299a3 366 SUPERFAMILY SSF55031 166 272 2.09E-10 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BRM88_24250 4125610434512443b3734f0a4ce0d529 351 SUPERFAMILY SSF54506 172 350 1.51E-50 T 31-10-2018 BRM88_24250 4125610434512443b3734f0a4ce0d529 351 Pfam PF04303 PrpF protein 4 350 2.1E-107 T 31-10-2018 IPR007400 PrpF protein BRM88_24250 4125610434512443b3734f0a4ce0d529 351 Gene3D G3DSA:3.10.310.10 6 350 8.9E-111 T 31-10-2018 BRM88_24250 4125610434512443b3734f0a4ce0d529 351 Gene3D G3DSA:3.10.310.10 167 336 8.9E-111 T 31-10-2018 BRM88_24250 4125610434512443b3734f0a4ce0d529 351 SUPERFAMILY SSF54506 4 168 5.81E-60 T 31-10-2018 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 Pfam PF00294 pfkB family carbohydrate kinase 1 310 3.1E-45 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 Gene3D G3DSA:3.40.1190.20 1 315 8.6E-77 T 31-10-2018 IPR029056 Ribokinase-like BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 SUPERFAMILY SSF53613 1 312 1.06E-58 T 31-10-2018 IPR029056 Ribokinase-like BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 261 274 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 Hamap MF_01987 Ribokinase [rbsK]. 2 315 21.678 T 31-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 PRINTS PR00990 Ribokinase signature 102 115 7.9E-19 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 PRINTS PR00990 Ribokinase signature 6 27 7.9E-19 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 PRINTS PR00990 Ribokinase signature 171 186 7.9E-19 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BRM88_20170 3b03cd39521b13556a3f4545d607009f 316 PRINTS PR00990 Ribokinase signature 224 235 7.9E-19 T 31-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Gene3D G3DSA:1.10.274.10 24 148 2.7E-61 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 SUPERFAMILY SSF47831 27 145 4.97E-26 T 31-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 PIRSF PIRSF000732 1 575 1.5E-196 T 31-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 543 2.2E-95 T 31-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 449 467 - T 31-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 6 566 9.9E-151 T 31-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Gene3D G3DSA:3.20.20.60 235 573 5.5E-108 T 31-10-2018 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 129 5.0E-24 T 31-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 SUPERFAMILY SSF52009 116 235 2.88E-28 T 31-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Pfam PF00391 PEP-utilising enzyme, mobile domain 155 226 5.7E-20 T 31-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 449 464 2.7E-26 T 31-10-2018 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 466 481 2.7E-26 T 31-10-2018 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 294 313 2.7E-26 T 31-10-2018 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 502 514 2.7E-26 T 31-10-2018 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 SUPERFAMILY SSF51621 249 544 1.26E-95 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_06545 352297d5e190e22102aef6c9415a1c4f 576 Gene3D G3DSA:3.50.30.10 7 234 2.7E-61 T 31-10-2018 BRM88_09345 0e0bd3c9adcae11500ed5938cbbaf08a 338 Gene3D G3DSA:3.40.367.20 120 319 4.6E-89 T 31-10-2018 BRM88_09345 0e0bd3c9adcae11500ed5938cbbaf08a 338 Pfam PF02685 Glucokinase 20 333 1.4E-99 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BRM88_09345 0e0bd3c9adcae11500ed5938cbbaf08a 338 Gene3D G3DSA:3.30.420.40 19 330 4.6E-89 T 31-10-2018 BRM88_09345 0e0bd3c9adcae11500ed5938cbbaf08a 338 SUPERFAMILY SSF53067 18 335 2.29E-49 T 31-10-2018 BRM88_21665 60065ec6c83db1231c65c53fb5e582d9 161 Pfam PF06127 Protein of unknown function (DUF962) 10 156 3.0E-25 T 31-10-2018 IPR009305 Protein of unknown function DUF962 BRM88_00315 ed016d05567c6e84c7b14ed86de0fb26 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.7E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_00315 ed016d05567c6e84c7b14ed86de0fb26 439 SUPERFAMILY SSF53098 18 403 5.16E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 Gene3D G3DSA:1.25.40.10 95 210 2.6E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 Pfam PF13469 Sulfotransferase family 283 471 1.4E-43 T 31-10-2018 BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 SUPERFAMILY SSF48452 8 179 4.27E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 Gene3D G3DSA:1.25.40.10 10 94 3.7E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 SUPERFAMILY SSF52540 280 507 3.87E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23365 34ce5ebad4e480a7d6b45af2981d3ff7 529 Gene3D G3DSA:3.40.50.300 272 525 1.5E-49 T 31-10-2018 BRM88_09480 35265dc4a2ff01297d30ae9752eca4cb 342 Pfam PF05170 AsmA family 9 175 4.8E-9 T 31-10-2018 IPR007844 AsmA BRM88_16760 57c89fcf235a880398e721c457b4df37 399 Gene3D G3DSA:3.90.230.10 165 399 7.7E-73 T 31-10-2018 BRM88_16760 57c89fcf235a880398e721c457b4df37 399 Pfam PF01321 Creatinase/Prolidase N-terminal domain 35 166 8.1E-16 T 31-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 BRM88_16760 57c89fcf235a880398e721c457b4df37 399 SUPERFAMILY SSF55920 165 391 7.59E-67 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like BRM88_16760 57c89fcf235a880398e721c457b4df37 399 SUPERFAMILY SSF53092 16 165 9.77E-25 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BRM88_16760 57c89fcf235a880398e721c457b4df37 399 Pfam PF00557 Metallopeptidase family M24 174 381 4.9E-49 T 31-10-2018 IPR000994 Peptidase M24 BRM88_16760 57c89fcf235a880398e721c457b4df37 399 Gene3D G3DSA:3.40.350.10 1 164 1.7E-47 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BRM88_02140 759a14208de0a98932befc2575348f02 44 Pfam PF08085 Entericidin EcnA/B family 22 42 2.1E-8 T 31-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 BRM88_11005 30befc87236ddf91c0994bc1bbba3913 155 Gene3D G3DSA:3.30.1150.10 49 153 8.0E-20 T 31-10-2018 BRM88_11005 30befc87236ddf91c0994bc1bbba3913 155 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 75 152 3.8E-14 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_11005 30befc87236ddf91c0994bc1bbba3913 155 SUPERFAMILY SSF74653 73 151 3.14E-16 T 31-10-2018 BRM88_11005 30befc87236ddf91c0994bc1bbba3913 155 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 75 152 4.6E-16 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_07835 02fbaf4dd910623b4d46a5ca0f475b6d 276 SUPERFAMILY SSF69572 5 260 1.02E-54 T 31-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BRM88_07835 02fbaf4dd910623b4d46a5ca0f475b6d 276 Gene3D G3DSA:3.40.50.720 1 270 4.4E-86 T 31-10-2018 BRM88_07835 02fbaf4dd910623b4d46a5ca0f475b6d 276 Pfam PF00899 ThiF family 19 162 1.5E-33 T 31-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BRM88_17235 20f30aa2cfb074ad3507a928a7d03a59 101 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 101 19.628 T 31-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BRM88_17235 20f30aa2cfb074ad3507a928a7d03a59 101 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 96 1.4E-22 T 31-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Gene3D G3DSA:1.10.287.470 91 156 1.9E-49 T 31-10-2018 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Pfam PF13533 Biotin-lipoyl like 66 104 8.6E-9 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Pfam PF13437 HlyD family secretion protein 169 254 2.7E-8 T 31-10-2018 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Gene3D G3DSA:2.40.420.20 279 352 1.9E-49 T 31-10-2018 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 48 354 1.7E-61 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 SUPERFAMILY SSF111369 52 193 7.59E-9 T 31-10-2018 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Gene3D G3DSA:2.40.50.100 57 203 1.9E-49 T 31-10-2018 BRM88_08075 5505e87c07e9da3079ef9d06a1f22f8f 367 Gene3D G3DSA:2.40.30.170 49 278 1.9E-49 T 31-10-2018 BRM88_15235 5e315848cfba21df66dce075016124da 358 SMART SM00448 7 130 2.6E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15235 5e315848cfba21df66dce075016124da 358 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 7 355 40.768 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_15235 5e315848cfba21df66dce075016124da 358 Gene3D G3DSA:3.40.50.180 161 358 2.6E-75 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_15235 5e315848cfba21df66dce075016124da 358 PIRSF PIRSF000876 4 358 4.4E-135 T 31-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_15235 5e315848cfba21df66dce075016124da 358 Pfam PF01339 CheB methylesterase 172 350 2.4E-57 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_15235 5e315848cfba21df66dce075016124da 358 Pfam PF00072 Response regulator receiver domain 9 111 9.1E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15235 5e315848cfba21df66dce075016124da 358 SUPERFAMILY SSF52738 167 354 1.07E-69 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_15235 5e315848cfba21df66dce075016124da 358 Gene3D G3DSA:3.40.50.2300 6 136 1.3E-30 T 31-10-2018 BRM88_15235 5e315848cfba21df66dce075016124da 358 SUPERFAMILY SSF52172 6 111 1.71E-28 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_17645 11623641050a278cf30ac7896b02ae40 481 Gene3D G3DSA:3.30.2290.10 24 239 5.3E-25 T 31-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal BRM88_17645 11623641050a278cf30ac7896b02ae40 481 PIRSF PIRSF004919 21 480 9.7E-143 T 31-10-2018 IPR025502 TldD BRM88_17645 11623641050a278cf30ac7896b02ae40 481 SUPERFAMILY SSF111283 23 479 5.49E-137 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 BRM88_17645 11623641050a278cf30ac7896b02ae40 481 Pfam PF01523 Putative modulator of DNA gyrase 40 331 2.4E-76 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 BRM88_18035 c00068788664698dd6fa17d098a27578 889 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 293 303 1.6E-21 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_18035 c00068788664698dd6fa17d098a27578 889 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 328 343 1.6E-21 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_18035 c00068788664698dd6fa17d098a27578 889 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 160 175 1.6E-21 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_18035 c00068788664698dd6fa17d098a27578 889 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 208 223 1.6E-21 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_18035 c00068788664698dd6fa17d098a27578 889 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 347 359 1.6E-21 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_18035 c00068788664698dd6fa17d098a27578 889 Gene3D G3DSA:1.25.50.20 596 889 6.5E-14 T 31-10-2018 BRM88_18035 c00068788664698dd6fa17d098a27578 889 Pfam PF11838 ERAP1-like C-terminal domain 558 878 7.5E-36 T 31-10-2018 IPR024571 ERAP1-like C-terminal domain BRM88_18035 c00068788664698dd6fa17d098a27578 889 SUPERFAMILY SSF55486 243 487 3.52E-72 T 31-10-2018 BRM88_18035 c00068788664698dd6fa17d098a27578 889 Gene3D G3DSA:1.10.390.60 239 495 1.7E-78 T 31-10-2018 BRM88_18035 c00068788664698dd6fa17d098a27578 889 SUPERFAMILY SSF63737 27 225 1.03E-48 T 31-10-2018 BRM88_18035 c00068788664698dd6fa17d098a27578 889 Gene3D G3DSA:2.60.40.1730 20 226 9.3E-54 T 31-10-2018 BRM88_18035 c00068788664698dd6fa17d098a27578 889 Pfam PF01433 Peptidase family M1 domain 249 468 3.8E-68 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 Gene3D G3DSA:2.40.50.100 58 202 9.6E-96 T 31-10-2018 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 Gene3D G3DSA:1.10.287.470 93 166 9.6E-96 T 31-10-2018 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 288 3.1E-13 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 SUPERFAMILY SSF111369 47 291 2.88E-69 T 31-10-2018 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 Gene3D G3DSA:2.40.420.20 299 365 9.6E-96 T 31-10-2018 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 366 7.1E-76 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_14815 eea64f43b62ddffe1b6a5e6afd51ab7d 434 Gene3D G3DSA:2.40.30.170 45 298 9.6E-96 T 31-10-2018 BRM88_20945 3257d1e1972de2a342d731df6e190e0a 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.5E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_20945 3257d1e1972de2a342d731df6e190e0a 318 SUPERFAMILY SSF53098 163 308 1.17E-20 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 SUPERFAMILY SSF52402 1 221 3.31E-63 T 31-10-2018 BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 PIRSF PIRSF006293 1 223 2.3E-77 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 5.1E-76 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 56.09 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 Gene3D G3DSA:3.40.50.620 1 221 3.7E-72 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_08710 7579f4ca6e96af7fddd2235b35299f68 224 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 5.3E-57 T 31-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 240 266 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 77 102 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 152 173 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 308 320 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 105 125 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 218 239 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 5.9E-39 T 31-10-2018 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 788 907 8.7E-30 T 31-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein BRM88_21675 8fed62257899cdfd5315667c27339e77 942 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 115 2.7E-10 T 31-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 Pfam PF13244 Domain of unknown function (DUF4040) 611 675 1.9E-17 T 31-10-2018 IPR025383 Domain of unknown function DUF4040 BRM88_21675 8fed62257899cdfd5315667c27339e77 942 Pfam PF00361 Proton-conducting membrane transporter 128 415 2.8E-66 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_04945 5f888b3c11669c762fce078271342063 172 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 4 168 22.614 T 31-10-2018 IPR022920 Disulphide bond formation protein DsbB BRM88_04945 5f888b3c11669c762fce078271342063 172 Gene3D G3DSA:1.20.1550.10 6 171 3.0E-49 T 31-10-2018 IPR023380 DsbB-like superfamily BRM88_04945 5f888b3c11669c762fce078271342063 172 Pfam PF02600 Disulfide bond formation protein DsbB 9 159 3.6E-41 T 31-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 BRM88_04945 5f888b3c11669c762fce078271342063 172 SUPERFAMILY SSF158442 12 159 2.88E-41 T 31-10-2018 IPR023380 DsbB-like superfamily BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 Pfam PF03572 Peptidase family S41 207 368 7.6E-55 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 Gene3D G3DSA:2.30.42.10 110 195 9.5E-95 T 31-10-2018 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 371 2.0E-95 T 31-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 Gene3D G3DSA:3.90.226.10 196 368 9.5E-95 T 31-10-2018 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 SMART SM00228 110 179 1.5E-10 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 Gene3D G3DSA:3.30.750.44 57 346 9.5E-95 T 31-10-2018 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 SMART SM00245 181 371 4.0E-70 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 SUPERFAMILY SSF52096 50 375 2.98E-75 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 Pfam PF13180 PDZ domain 111 188 5.3E-13 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_24375 ea1b2425ac1131952eb7f620eed8fa97 507 SUPERFAMILY SSF50156 105 191 9.93E-16 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_21980 a0e96b1f4b3f816985b634e9620c9b6b 320 SMART SM01126 137 285 3.7E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21980 a0e96b1f4b3f816985b634e9620c9b6b 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21980 a0e96b1f4b3f816985b634e9620c9b6b 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 7.7E-11 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_22805 d5768680e07a1e89e252aa3558405031 546 Gene3D G3DSA:3.30.260.10 136 410 4.1E-238 T 31-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BRM88_22805 d5768680e07a1e89e252aa3558405031 546 SUPERFAMILY SSF48592 7 521 8.4E-79 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily BRM88_22805 d5768680e07a1e89e252aa3558405031 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 1.3E-96 T 31-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 Gene3D G3DSA:1.10.560.10 8 521 4.1E-238 T 31-10-2018 IPR027413 GroEL-like equatorial domain superfamily BRM88_22805 d5768680e07a1e89e252aa3558405031 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.575 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 31-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 SUPERFAMILY SSF52029 184 376 4.36E-82 T 31-10-2018 IPR027409 GroEL-like apical domain superfamily BRM88_22805 d5768680e07a1e89e252aa3558405031 546 PRINTS PR00298 60kDa chaperonin signature 398 419 1.6E-74 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 PRINTS PR00298 60kDa chaperonin signature 83 110 1.6E-74 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 PRINTS PR00298 60kDa chaperonin signature 268 291 1.6E-74 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 PRINTS PR00298 60kDa chaperonin signature 27 53 1.6E-74 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 PRINTS PR00298 60kDa chaperonin signature 350 375 1.6E-74 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 4.0E-254 T 31-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BRM88_22805 d5768680e07a1e89e252aa3558405031 546 Gene3D G3DSA:3.50.7.10 192 372 4.1E-238 T 31-10-2018 IPR027409 GroEL-like apical domain superfamily BRM88_22805 d5768680e07a1e89e252aa3558405031 546 SUPERFAMILY SSF54849 137 203 2.52E-24 T 31-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BRM88_18630 86eee731d2b0bec17682db0ce0f1dc87 162 Gene3D G3DSA:1.25.40.10 1 122 2.2E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_18630 86eee731d2b0bec17682db0ce0f1dc87 162 SUPERFAMILY SSF48452 3 70 9.91E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 4.1E-17 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 SMART SM00421 145 202 2.4E-21 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 SUPERFAMILY SSF46894 139 206 5.78E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 SMART SM00448 1 114 1.6E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 Pfam PF00072 Response regulator receiver domain 3 114 5.0E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 Gene3D G3DSA:3.40.50.12740 1 207 6.3E-60 T 31-10-2018 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 SUPERFAMILY SSF52172 2 130 3.7E-31 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 1.5E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 1.5E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_13610 8b16cab7c5e81ad54bc11cab8aec899e 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 1.5E-12 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_06475 21a6494825fbd77ad511588281471654 465 Pfam PF13365 Trypsin-like peptidase domain 269 420 2.3E-8 T 31-10-2018 BRM88_06475 21a6494825fbd77ad511588281471654 465 Gene3D G3DSA:2.40.10.10 254 454 4.7E-49 T 31-10-2018 BRM88_06475 21a6494825fbd77ad511588281471654 465 SUPERFAMILY SSF50494 230 462 6.04E-36 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_06475 21a6494825fbd77ad511588281471654 465 Gene3D G3DSA:2.40.10.10 230 453 4.7E-49 T 31-10-2018 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Gene3D G3DSA:3.30.470.20 1 234 1.8E-88 T 31-10-2018 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Gene3D G3DSA:3.40.50.261 240 388 1.3E-56 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 31-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Pfam PF00549 CoA-ligase 262 382 4.3E-26 T 31-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Pfam PF08442 ATP-grasp domain 2 202 1.1E-72 T 31-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Gene3D G3DSA:3.30.1490.20 21 104 1.8E-88 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 PIRSF PIRSF001554 1 388 3.6E-147 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 SUPERFAMILY SSF52210 239 385 3.4E-53 T 31-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 41.714 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 5.7E-157 T 31-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BRM88_08230 b608617f7bf58ddf376dbf01520262ec 389 SUPERFAMILY SSF56059 1 238 7.78E-75 T 31-10-2018 BRM88_10090 cdbf25290fbabb3ae3537658a21b0132 465 Gene3D G3DSA:1.20.1740.10 12 463 2.8E-58 T 31-10-2018 BRM88_10090 cdbf25290fbabb3ae3537658a21b0132 465 Pfam PF00324 Amino acid permease 20 459 2.4E-109 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BRM88_10090 cdbf25290fbabb3ae3537658a21b0132 465 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BRM88_10090 cdbf25290fbabb3ae3537658a21b0132 465 PIRSF PIRSF006060 1 465 7.6E-76 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 SUPERFAMILY SSF53927 16 271 3.31E-81 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 Gene3D G3DSA:3.40.140.10 124 276 6.5E-51 T 31-10-2018 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 12 272 34.914 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 PIRSF PIRSF015626 1 274 1.8E-86 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 30 272 2.2E-67 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 Pfam PF02634 FdhD/NarQ family 34 271 2.3E-80 T 31-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BRM88_14740 7630a5a1334924cce3e45b619d785b23 281 Gene3D G3DSA:3.10.20.10 36 122 7.7E-10 T 31-10-2018 BRM88_15445 df0fe0cfc9ec1e2fe2e315ea68046f46 265 SUPERFAMILY SSF52096 5 259 4.81E-66 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_15445 df0fe0cfc9ec1e2fe2e315ea68046f46 265 Gene3D G3DSA:1.10.12.10 204 264 2.7E-15 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BRM88_15445 df0fe0cfc9ec1e2fe2e315ea68046f46 265 Gene3D G3DSA:3.90.226.10 4 203 1.8E-53 T 31-10-2018 BRM88_15445 df0fe0cfc9ec1e2fe2e315ea68046f46 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 3.2E-48 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 Hamap MF_01151 Protein GrpE [grpE]. 3 170 19.475 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 ProSitePatterns PS01071 grpE protein signature. 125 168 - T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 PRINTS PR00773 GrpE protein signature 42 58 5.8E-24 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 PRINTS PR00773 GrpE protein signature 70 85 5.8E-24 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 PRINTS PR00773 GrpE protein signature 149 168 5.8E-24 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 PRINTS PR00773 GrpE protein signature 122 137 5.8E-24 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 Gene3D G3DSA:2.30.22.10 114 170 1.2E-23 T 31-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 SUPERFAMILY SSF58014 20 114 6.28E-22 T 31-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 SUPERFAMILY SSF51064 116 171 2.62E-18 T 31-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 Gene3D G3DSA:3.90.20.20 2 112 5.3E-23 T 31-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BRM88_10555 bb27d43b3ae33c7fa151d269d3bbf164 172 Pfam PF01025 GrpE 11 170 4.7E-47 T 31-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 Gene3D G3DSA:2.40.50.100 83 160 1.2E-28 T 31-10-2018 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 160 3.0E-51 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 117 134 - T 31-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 107 121 2.2E-14 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 90 103 2.2E-14 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 122 135 2.2E-14 T 31-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 Pfam PF00364 Biotin-requiring enzyme 87 160 2.8E-21 T 31-10-2018 IPR000089 Biotin/lipoyl attachment BRM88_02840 d74cc366c088e33894c15018d9de4a02 161 SUPERFAMILY SSF51230 86 160 4.97E-23 T 31-10-2018 IPR011053 Single hybrid motif BRM88_12730 fcae2e858c11fef137fbfcbc7290fd88 364 Pfam PF01757 Acyltransferase family 8 319 1.1E-22 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF05000 RNA polymerase Rpb1, domain 4 675 764 6.8E-19 T 31-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:2.40.50.100 1025 1128 3.6E-27 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF04998 RNA polymerase Rpb1, domain 5 767 1316 7.1E-78 T 31-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 1.5E-27 T 31-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 395 3.8E-8 T 31-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 31-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1378 18.949 T 31-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 645 1.1E-27 T 31-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:2.40.50.100 1153 1216 1.5E-62 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:1.10.274.100 490 641 1.5E-41 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:1.10.150.390 1317 1374 2.2E-27 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:1.10.132.30 642 791 1.8E-63 T 31-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 342 1.6E-86 T 31-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 SUPERFAMILY SSF64484 16 1364 0.0 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:1.10.40.90 374 416 6.1E-22 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 SMART SM00663 235 514 1.1E-183 T 31-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:1.10.1790.20 1137 1315 1.5E-62 T 31-10-2018 BRM88_19155 23b06c4fcad0b23f205fda78dbab9ace 1405 Gene3D G3DSA:2.40.50.100 950 1024 2.2E-26 T 31-10-2018 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 Gene3D G3DSA:1.10.10.60 4 89 1.9E-26 T 31-10-2018 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 SUPERFAMILY SSF46689 11 89 4.35E-23 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PIRSF PIRSF002097 2 90 5.3E-35 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 Pfam PF02954 Bacterial regulatory protein, Fis family 47 87 4.4E-14 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 53 70 5.0E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 70 90 5.0E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PRINTS PR01591 DNA-binding protein FIS signature 18 34 1.0E-8 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PRINTS PR01591 DNA-binding protein FIS signature 34 49 1.0E-8 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BRM88_02770 2d98c7ab7d4611ec6242518d73c4eb42 90 PRINTS PR01591 DNA-binding protein FIS signature 49 61 1.0E-8 T 31-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BRM88_07720 0272234939c0b7b321776692fce3293d 270 SMART SM00645 53 267 3.9E-5 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_07720 0272234939c0b7b321776692fce3293d 270 Pfam PF00112 Papain family cysteine protease 68 255 1.0E-9 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_07720 0272234939c0b7b321776692fce3293d 270 ProSitePatterns PS00639 Eukaryotic thiol (cysteine) proteases histidine active site. 222 232 - T 31-10-2018 IPR025660 Cysteine peptidase, histidine active site Reactome: R-HSA-2132295 BRM88_07720 0272234939c0b7b321776692fce3293d 270 Gene3D G3DSA:3.90.70.10 24 269 1.6E-37 T 31-10-2018 BRM88_07720 0272234939c0b7b321776692fce3293d 270 SUPERFAMILY SSF54001 39 257 6.32E-35 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_03170 8e08608e77ba57e5c1051d824e437752 224 Gene3D G3DSA:3.30.1330.60 41 210 9.1E-38 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_03170 8e08608e77ba57e5c1051d824e437752 224 SUPERFAMILY SSF103088 82 200 4.58E-29 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_03170 8e08608e77ba57e5c1051d824e437752 224 Pfam PF00691 OmpA family 92 196 1.3E-19 T 31-10-2018 IPR006665 OmpA-like domain BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 Gene3D G3DSA:3.50.50.60 1 78 2.1E-10 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 Pfam PF01266 FAD dependent oxidoreductase 3 398 7.7E-72 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 SUPERFAMILY SSF54373 270 360 1.09E-18 T 31-10-2018 BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 Gene3D G3DSA:3.50.50.60 100 405 2.8E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 SUPERFAMILY SSF51905 1 417 3.5E-53 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 Gene3D G3DSA:3.30.9.10 134 362 2.8E-52 T 31-10-2018 BRM88_03455 24e2f3df177d9936ac164d7dbbfb345b 429 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 49.029 T 31-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 BRM88_09120 5b69bc447c148c7c39c9c8d2e57cb6cc 120 SMART SM00448 2 115 3.7E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09120 5b69bc447c148c7c39c9c8d2e57cb6cc 120 Pfam PF00072 Response regulator receiver domain 4 116 6.8E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09120 5b69bc447c148c7c39c9c8d2e57cb6cc 120 Gene3D G3DSA:3.40.50.12740 1 120 1.4E-40 T 31-10-2018 BRM88_09120 5b69bc447c148c7c39c9c8d2e57cb6cc 120 SUPERFAMILY SSF52172 1 120 8.4E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_03375 de7152f707961e191ad720cab941282b 253 Pfam PF01061 ABC-2 type transporter 6 216 2.4E-32 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 BRM88_03375 de7152f707961e191ad720cab941282b 253 PIRSF PIRSF006648 8 252 7.0E-26 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03375 de7152f707961e191ad720cab941282b 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 1.5E-14 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03375 de7152f707961e191ad720cab941282b 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 1.5E-14 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03375 de7152f707961e191ad720cab941282b 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 136 160 1.5E-14 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03375 de7152f707961e191ad720cab941282b 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 99 124 1.5E-14 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03375 de7152f707961e191ad720cab941282b 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 1.5E-14 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 Pfam PF01037 Lrp/AsnC ligand binding domain 73 146 9.0E-23 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.4E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.4E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.4E-12 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 SMART SM00344 7 116 3.4E-33 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 2.3E-16 T 31-10-2018 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 Gene3D G3DSA:3.30.70.920 61 144 3.2E-28 T 31-10-2018 BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 SUPERFAMILY SSF54909 67 156 2.01E-21 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 Gene3D G3DSA:1.10.10.10 2 60 1.1E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_01290 cbacc12abbc4193cde506b5a5a57dab5 160 SUPERFAMILY SSF46785 6 66 9.1E-16 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_05615 74f2f37e81f93fca2a7a0064dcbea1e2 397 Gene3D G3DSA:2.40.160.10 23 397 4.1E-73 T 31-10-2018 IPR023614 Porin domain superfamily BRM88_05615 74f2f37e81f93fca2a7a0064dcbea1e2 397 Pfam PF07396 Phosphate-selective porin O and P 35 397 2.2E-89 T 31-10-2018 IPR010870 Phosphate-selective porin O/P BRM88_05615 74f2f37e81f93fca2a7a0064dcbea1e2 397 SUPERFAMILY SSF56935 25 387 1.25E-9 T 31-10-2018 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 SMART SM00028 91 124 50.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 SMART SM00028 23 56 84.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 SMART SM00028 57 90 1.8 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Gene3D G3DSA:1.25.40.10 93 162 5.3E-22 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 SUPERFAMILY SSF53756 210 558 8.07E-10 T 31-10-2018 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Gene3D G3DSA:3.40.50.2000 364 542 9.0E-140 T 31-10-2018 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Gene3D G3DSA:3.40.50.11380 189 549 9.0E-140 T 31-10-2018 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Pfam PF14559 Tetratricopeptide repeat 68 122 1.1E-6 T 31-10-2018 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 SUPERFAMILY SSF48452 6 127 4.22E-19 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Pfam PF13844 Glycosyl transferase family 41 206 357 1.0E-31 T 31-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Pfam PF13844 Glycosyl transferase family 41 367 556 1.6E-41 T 31-10-2018 IPR029489 O-GlcNAc transferase, C-terminal KEGG: 00514+2.4.1.255|MetaCyc: PWY-7437|Reactome: R-HSA-3214847|Reactome: R-HSA-5689603 BRM88_19275 1ddc08c9cc2e9415ea12553990db8a9a 568 Gene3D G3DSA:1.25.40.10 3 92 9.5E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 Pfam PF13229 Right handed beta helix region 168 315 2.1E-18 T 31-10-2018 IPR039448 Right handed beta helix domain BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 247 281 6.9E-7 T 31-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00722 173 288 5.1E-4 T 31-10-2018 IPR006633 Carbohydrate-binding/sugar hydrolysis domain BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 Gene3D G3DSA:2.160.20.10 63 361 1.4E-26 T 31-10-2018 IPR012334 Pectin lyase fold BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SUPERFAMILY SSF51126 54 357 3.43E-36 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 221 243 620.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 198 220 59.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 138 181 6400.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 306 329 1600.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 267 289 61.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_10390 8634cb07ec6e50138e9d27904cfe16c7 368 SMART SM00710 244 266 14.0 T 31-10-2018 IPR006626 Parallel beta-helix repeat BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 188 204 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 PIRSF PIRSF005902 1 255 8.3E-66 T 31-10-2018 IPR001130 TatD family GO:0016788 BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 SUPERFAMILY SSF51556 3 253 8.47E-79 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 Pfam PF01026 TatD related DNase 4 252 1.4E-65 T 31-10-2018 IPR001130 TatD family GO:0016788 BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 125 135 - T 31-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BRM88_07840 2d030a0ef10f7cd40e225d4e03f755d0 255 Gene3D G3DSA:3.20.20.140 1 254 6.4E-79 T 31-10-2018 BRM88_12495 d6b1bcb855279123bf5b8b7603b44183 651 Pfam PF05787 Bacterial protein of unknown function (DUF839) 201 556 1.0E-15 T 31-10-2018 IPR008557 Protein of unknown function DUF839 BRM88_13025 f7167bd7966e3a42b442e33adb8fe04f 324 Gene3D G3DSA:1.10.3720.10 78 321 5.4E-33 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_13025 f7167bd7966e3a42b442e33adb8fe04f 324 SUPERFAMILY SSF161098 33 311 1.18E-33 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_13025 f7167bd7966e3a42b442e33adb8fe04f 324 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 25 317 3.3E-90 T 31-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 BRM88_13025 f7167bd7966e3a42b442e33adb8fe04f 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 310 1.2E-14 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 Gene3D G3DSA:2.60.410.10 293 383 3.8E-33 T 31-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 47 273 1.1E-79 T 31-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 SMART SM00936 293 383 7.9E-34 T 31-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 133 150 2.9E-16 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 75 86 2.9E-16 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 160 173 2.9E-16 T 31-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 SUPERFAMILY SSF56601 1 293 8.15E-81 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 293 383 3.8E-27 T 31-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 SUPERFAMILY SSF69189 293 385 1.18E-26 T 31-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BRM88_21105 84bdbdffc9a6fe88f0cb473056e51ef7 401 Gene3D G3DSA:3.40.710.10 32 291 4.5E-88 T 31-10-2018 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 SUPERFAMILY SSF55073 811 965 1.18E-40 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Gene3D G3DSA:2.60.40.10 650 746 1.7E-7 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Pfam PF07495 Y_Y_Y domain 675 737 2.2E-10 T 31-10-2018 IPR011123 Two component regulator three Y BRM88_13765 61e172eb202826f38059043f36c0a46f 973 SMART SM00267 795 966 4.5E-56 T 31-10-2018 IPR000160 GGDEF domain BRM88_13765 61e172eb202826f38059043f36c0a46f 973 SUPERFAMILY SSF63829 273 496 7.85E-11 T 31-10-2018 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Gene3D G3DSA:3.30.70.270 791 965 1.9E-50 T 31-10-2018 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 SUPERFAMILY SSF63829 63 241 2.03E-6 T 31-10-2018 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Gene3D G3DSA:2.130.10.10 435 631 1.8E-20 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Gene3D G3DSA:2.130.10.10 148 374 4.2E-16 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Gene3D G3DSA:2.130.10.10 26 135 1.1E-7 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13765 61e172eb202826f38059043f36c0a46f 973 Pfam PF00990 Diguanylate cyclase, GGDEF domain 806 962 1.3E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_13765 61e172eb202826f38059043f36c0a46f 973 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 804 964 3.7E-43 T 31-10-2018 IPR000160 GGDEF domain BRM88_15085 5c66fd19504e60f0c21660403a273d02 260 Pfam PF13614 AAA domain 1 176 4.2E-38 T 31-10-2018 IPR025669 AAA domain BRM88_15085 5c66fd19504e60f0c21660403a273d02 260 SUPERFAMILY SSF52540 1 250 8.1E-50 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15085 5c66fd19504e60f0c21660403a273d02 260 Gene3D G3DSA:3.40.50.300 1 257 5.6E-58 T 31-10-2018 BRM88_06670 24cd3f0718b20440fec987e1ef4db3eb 233 Pfam PF00308 Bacterial dnaA protein 18 208 3.4E-5 T 31-10-2018 IPR013317 Chromosomal replication initiator protein DnaA BRM88_06670 24cd3f0718b20440fec987e1ef4db3eb 233 Gene3D G3DSA:3.40.50.300 2 160 4.1E-25 T 31-10-2018 BRM88_06670 24cd3f0718b20440fec987e1ef4db3eb 233 Gene3D G3DSA:1.10.8.60 164 229 9.1E-23 T 31-10-2018 BRM88_06670 24cd3f0718b20440fec987e1ef4db3eb 233 SUPERFAMILY SSF52540 13 209 5.07E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06670 24cd3f0718b20440fec987e1ef4db3eb 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 5 229 2.6E-70 T 31-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 SUPERFAMILY SSF51735 7 151 1.79E-23 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_10580 0cb8ae43efd34334b36119c279164750 373 Gene3D G3DSA:1.10.3660.10 161 277 2.7E-12 T 31-10-2018 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 Pfam PF01842 ACT domain 297 351 5.3E-7 T 31-10-2018 IPR002912 ACT domain BRM88_10580 0cb8ae43efd34334b36119c279164750 373 SUPERFAMILY SSF48179 155 254 1.7E-18 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 SUPERFAMILY SSF55021 296 362 5.64E-10 T 31-10-2018 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 Gene3D G3DSA:3.30.70.260 296 364 6.7E-8 T 31-10-2018 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 Pfam PF02153 Prephenate dehydrogenase 44 252 5.0E-25 T 31-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 BRM88_10580 0cb8ae43efd34334b36119c279164750 373 Gene3D G3DSA:3.40.50.720 2 159 1.1E-27 T 31-10-2018 BRM88_11555 b68f5f4ee74b7091c2a7283e5f143161 358 Pfam PF00561 alpha/beta hydrolase fold 68 332 4.2E-24 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_11555 b68f5f4ee74b7091c2a7283e5f143161 358 TIGRFAM TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 7 354 3.8E-174 T 31-10-2018 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit GO:0016746|GO:0042619 BRM88_11555 b68f5f4ee74b7091c2a7283e5f143161 358 SUPERFAMILY SSF53474 37 352 9.63E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_11555 b68f5f4ee74b7091c2a7283e5f143161 358 Gene3D G3DSA:3.40.50.1820 49 353 7.4E-19 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_10220 de85db86f3a244342795dbc6ee43ed7d 726 SUPERFAMILY SSF56935 61 726 1.03E-75 T 31-10-2018 BRM88_10220 de85db86f3a244342795dbc6ee43ed7d 726 Gene3D G3DSA:2.40.170.20 230 692 2.2E-47 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_10220 de85db86f3a244342795dbc6ee43ed7d 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 92 208 8.2E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_10220 de85db86f3a244342795dbc6ee43ed7d 726 Gene3D G3DSA:2.170.130.10 92 216 6.2E-20 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_10220 de85db86f3a244342795dbc6ee43ed7d 726 Pfam PF00593 TonB dependent receptor 258 689 1.3E-27 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_09635 6fc889f277c204d7ab817aa76aa8ff6a 321 Gene3D G3DSA:1.20.1510.10 17 209 3.5E-45 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_09635 6fc889f277c204d7ab817aa76aa8ff6a 321 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 288 1.6E-85 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_09635 6fc889f277c204d7ab817aa76aa8ff6a 321 Pfam PF01545 Cation efflux family 19 209 3.4E-46 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_09635 6fc889f277c204d7ab817aa76aa8ff6a 321 SUPERFAMILY SSF160240 215 287 6.02E-11 T 31-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BRM88_09635 6fc889f277c204d7ab817aa76aa8ff6a 321 SUPERFAMILY SSF161111 16 210 2.48E-55 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_23700 6bb48c94d85938031979426e361360ef 82 SMART SM00530 17 72 1.1E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_23700 6bb48c94d85938031979426e361360ef 82 SUPERFAMILY SSF47413 12 74 1.75E-13 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_23700 6bb48c94d85938031979426e361360ef 82 Gene3D G3DSA:1.10.260.40 2 81 2.3E-28 T 31-10-2018 BRM88_23700 6bb48c94d85938031979426e361360ef 82 Pfam PF13560 Helix-turn-helix domain 16 70 3.0E-11 T 31-10-2018 BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 Gene3D G3DSA:3.60.20.10 2 196 2.5E-63 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 SUPERFAMILY SSF52402 212 487 7.07E-74 T 31-10-2018 BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 SMART SM01172 5 210 0.0034 T 31-10-2018 IPR024286 Domain of unknown function DUF3700 BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 Pfam PF13537 Glutamine amidotransferase domain 50 169 3.2E-40 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 SUPERFAMILY SSF56235 1 196 2.4E-54 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 PIRSF PIRSF001589 1 524 1.2E-127 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 Pfam PF00733 Asparagine synthase 214 370 5.0E-57 T 31-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 Gene3D G3DSA:3.40.50.620 198 522 1.3E-105 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_10385 ef0ebe27014b62bd302ad1888a2572d9 564 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 375 2.3E-105 T 31-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 97 1.0E-48 T 31-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 103 189 1.5E-24 T 31-10-2018 IPR020057 Ribosomal protein L25, beta domain BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 173 2.3E-38 T 31-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Gene3D G3DSA:2.40.240.10 2 97 6.4E-33 T 31-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 5 97 23.496 T 31-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 SUPERFAMILY SSF50715 4 197 1.67E-55 T 31-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 188 30.005 T 31-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Gene3D G3DSA:2.170.120.20 99 198 4.2E-24 T 31-10-2018 IPR037121 Ribosomal protein L25, C-terminal BRM88_19235 da0676e2512fc7b01787cf5cd6dd543f 211 Pfam PF01386 Ribosomal L25p family 7 94 7.7E-27 T 31-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BRM88_01900 c64eece7265febbd275074eb00da9ba4 1004 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 50 1003 2.8E-198 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_01900 c64eece7265febbd275074eb00da9ba4 1004 Gene3D G3DSA:2.170.130.10 42 185 2.0E-17 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_01900 c64eece7265febbd275074eb00da9ba4 1004 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 176 3.8E-15 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_01900 c64eece7265febbd275074eb00da9ba4 1004 SUPERFAMILY SSF56935 44 1003 1.95E-91 T 31-10-2018 BRM88_01900 c64eece7265febbd275074eb00da9ba4 1004 Pfam PF00593 TonB dependent receptor 461 1002 7.2E-36 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_05525 f8579a6051eb00659f05891211aa0974 111 Pfam PF14487 Domain of unknown function (DUF4433) 16 108 3.0E-21 T 31-10-2018 IPR029494 Domain of unknown function DUF4433 BRM88_08170 8af1a83fd6827bf89e510f30e6e83a65 202 Pfam PF01121 Dephospho-CoA kinase 5 182 5.6E-58 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BRM88_08170 8af1a83fd6827bf89e510f30e6e83a65 202 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 5 187 3.4E-49 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BRM88_08170 8af1a83fd6827bf89e510f30e6e83a65 202 Gene3D G3DSA:3.40.50.300 2 202 2.8E-61 T 31-10-2018 BRM88_08170 8af1a83fd6827bf89e510f30e6e83a65 202 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 3 195 26.688 T 31-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BRM88_08170 8af1a83fd6827bf89e510f30e6e83a65 202 SUPERFAMILY SSF52540 1 187 1.16E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20600 408ced58c6b76b7d4b145b4cbaed7d72 177 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 122 174 8.0E-24 T 31-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB BRM88_20600 408ced58c6b76b7d4b145b4cbaed7d72 177 Pfam PF11776 Nickel/cobalt transporter regulator 126 172 6.4E-17 T 31-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB BRM88_20600 408ced58c6b76b7d4b145b4cbaed7d72 177 Gene3D G3DSA:3.10.450.160 121 177 5.8E-6 T 31-10-2018 BRM88_14355 9e4350ad9526ad47a8df34df287e24c4 292 Hamap MF_00188 Protease HtpX [htpX]. 2 287 25.89 T 31-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 BRM88_14355 9e4350ad9526ad47a8df34df287e24c4 292 Gene3D G3DSA:3.30.2010.10 65 158 4.6E-35 T 31-10-2018 BRM88_14355 9e4350ad9526ad47a8df34df287e24c4 292 Pfam PF01435 Peptidase family M48 76 286 4.5E-41 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 SUPERFAMILY SSF55874 301 437 4.45E-26 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 SMART SM00388 230 296 1.5E-18 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 432 2.4E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 232 296 4.0E-16 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 SMART SM00387 336 439 3.0E-22 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 Gene3D G3DSA:3.30.565.10 298 438 9.4E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 Gene3D G3DSA:1.10.287.130 179 297 3.3E-21 T 31-10-2018 BRM88_06145 6f11fcdfef168a8d74c0830babf4ed8f 439 SUPERFAMILY SSF47384 213 296 2.55E-18 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_00835 122659e98f798015e97ceca9e1cea694 417 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 158 360 6.8E-29 T 31-10-2018 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 BRM88_00835 122659e98f798015e97ceca9e1cea694 417 Gene3D G3DSA:1.10.132.120 161 381 2.3E-85 T 31-10-2018 BRM88_00835 122659e98f798015e97ceca9e1cea694 417 Gene3D G3DSA:3.30.66.10 72 159 1.8E-23 T 31-10-2018 IPR035447 DNA topoisomerase I, N-terminal BRM88_00835 122659e98f798015e97ceca9e1cea694 417 Gene3D G3DSA:3.90.15.10 184 304 2.3E-85 T 31-10-2018 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 BRM88_00835 122659e98f798015e97ceca9e1cea694 417 SUPERFAMILY SSF56349 149 375 3.83E-66 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_00835 122659e98f798015e97ceca9e1cea694 417 SUPERFAMILY SSF55869 99 153 2.48E-17 T 31-10-2018 IPR035447 DNA topoisomerase I, N-terminal BRM88_03325 74e7031f409ee4c000eaab99d292842f 92 Pfam PF07681 DoxX 6 63 1.6E-9 T 31-10-2018 IPR032808 DoxX family BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 SUPERFAMILY SSF48208 294 797 2.93E-78 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 Gene3D G3DSA:1.50.10.10 333 719 3.8E-108 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 SUPERFAMILY SSF74650 16 289 4.39E-69 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 Pfam PF06165 Glycosyltransferase family 36 88 280 3.2E-22 T 31-10-2018 IPR010383 Glycosyl hydrolase 94 BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 Gene3D G3DSA:2.60.420.10 720 798 1.2E-10 T 31-10-2018 BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 Gene3D G3DSA:2.70.98.40 76 321 1.0E-37 T 31-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily BRM88_01615 dd01ab23dc0d5b305ab1e9b9eda39524 799 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 326 724 2.2E-60 T 31-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 Gene3D G3DSA:2.40.128.20 14 175 6.5E-46 T 31-10-2018 IPR012674 Calycin BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 PIRSF PIRSF036893 1 177 8.0E-62 T 31-10-2018 IPR022271 Lipocalin, ApoD type BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 Pfam PF08212 Lipocalin-like domain 30 174 1.3E-52 T 31-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 PRINTS PR01171 Bacterial lipocalin signature 138 149 4.1E-7 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 PRINTS PR01171 Bacterial lipocalin signature 30 44 4.1E-7 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 PRINTS PR01171 Bacterial lipocalin signature 123 131 4.1E-7 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 PRINTS PR01171 Bacterial lipocalin signature 165 175 4.1E-7 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 SUPERFAMILY SSF50814 21 172 1.5E-39 T 31-10-2018 IPR012674 Calycin BRM88_16915 8ec58c9dc618b76e76cd139ba092b750 178 ProSitePatterns PS00213 Lipocalin signature. 31 42 - T 31-10-2018 IPR022272 Lipocalin family conserved site BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 TIGRFAM TIGR00086 smpB: SsrA-binding protein 19 160 1.7E-51 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 Hamap MF_00023 SsrA-binding protein [smpB]. 1 166 67.908 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 Pfam PF01668 SmpB protein 19 161 3.6E-56 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 Gene3D G3DSA:2.40.280.10 12 139 1.8E-43 T 31-10-2018 IPR023620 Small protein B BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 ProSitePatterns PS01317 SsrA-binding protein. 37 49 - T 31-10-2018 IPR020081 SsrA-binding protein, conserved site BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 SUPERFAMILY SSF74982 14 143 7.98E-48 T 31-10-2018 IPR023620 Small protein B BRM88_10515 5cf204eef1f0242951bbf09749a7be0f 167 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 19 143 2.0E-67 T 31-10-2018 IPR000037 SsrA-binding protein GO:0003723 BRM88_13705 34ea6cb56e5bdc3a656be5f6087138e1 458 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 36 454 1.1E-166 T 31-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_13705 34ea6cb56e5bdc3a656be5f6087138e1 458 SMART SM00382 175 359 1.1E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13705 34ea6cb56e5bdc3a656be5f6087138e1 458 Gene3D G3DSA:3.40.50.12240 35 456 9.1E-146 T 31-10-2018 BRM88_13705 34ea6cb56e5bdc3a656be5f6087138e1 458 SUPERFAMILY SSF52540 111 379 3.85E-92 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13705 34ea6cb56e5bdc3a656be5f6087138e1 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 163 374 1.1E-71 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 SUPERFAMILY SSF75217 72 247 5.62E-48 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 5 247 39.755 T 31-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 6 246 7.9E-73 T 31-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 Gene3D G3DSA:3.40.1280.10 81 247 5.1E-59 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 SUPERFAMILY SSF55315 2 76 4.83E-14 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 SMART SM00967 7 83 4.2E-10 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 Gene3D G3DSA:3.30.1330.30 1 78 2.6E-16 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 Pfam PF00588 SpoU rRNA Methylase family 100 239 2.4E-39 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BRM88_10860 11656be9e2bc9910df878c5252ba0009 255 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 77 2.5E-12 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 65 78 3.2E-26 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 32 48 3.2E-26 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 49 65 3.2E-26 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 PRINTS PR00956 Flagellar motor switch protein FliN signature 78 93 3.2E-26 T 31-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 33 102 1.3E-25 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 Gene3D G3DSA:2.30.330.10 18 112 8.6E-35 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 29 104 2.0E-34 T 31-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 BRM88_13730 77807ee3edd7de11727e41fd12d8c145 112 SUPERFAMILY SSF101801 29 110 1.7E-25 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 Gene3D G3DSA:2.60.40.760 492 585 2.7E-31 T 31-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 SUPERFAMILY SSF51445 30 348 4.56E-32 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 Gene3D G3DSA:3.20.20.80 24 361 2.6E-51 T 31-10-2018 BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 33 220 4.5E-13 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 Gene3D G3DSA:2.40.40.10 385 491 9.2E-24 T 31-10-2018 IPR036908 RlpA-like domain superfamily BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 SUPERFAMILY SSF49590 494 566 2.22E-12 T 31-10-2018 IPR036749 Expansin, cellulose-binding-like domain superfamily BRM88_21515 fc1295707e8a7340cfd4118c3098bef6 590 SUPERFAMILY SSF50685 387 496 3.49E-18 T 31-10-2018 IPR036908 RlpA-like domain superfamily BRM88_01680 2b1b26d514537cc1584554e3e0443e45 722 Gene3D G3DSA:1.10.1370.10 187 652 9.0E-251 T 31-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BRM88_01680 2b1b26d514537cc1584554e3e0443e45 722 Gene3D G3DSA:1.10.1370.40 76 714 9.0E-251 T 31-10-2018 BRM88_01680 2b1b26d514537cc1584554e3e0443e45 722 Pfam PF01432 Peptidase family M3 271 719 3.1E-135 T 31-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 BRM88_01680 2b1b26d514537cc1584554e3e0443e45 722 SUPERFAMILY SSF55486 46 719 1.01E-180 T 31-10-2018 BRM88_22060 60fb735d36d43cb8b839239240d8c016 348 Gene3D G3DSA:1.20.1530.20 15 336 2.5E-37 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily BRM88_22060 60fb735d36d43cb8b839239240d8c016 348 PIRSF PIRSF026166 14 348 7.3E-132 T 31-10-2018 IPR016833 Putative sodium bile acid cotransporter BRM88_22060 60fb735d36d43cb8b839239240d8c016 348 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 26 335 1.3E-95 T 31-10-2018 IPR016833 Putative sodium bile acid cotransporter BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 SUPERFAMILY SSF48498 80 180 1.09E-8 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 SUPERFAMILY SSF46689 3 79 1.18E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 Gene3D G3DSA:1.10.357.10 1 185 3.9E-33 T 31-10-2018 BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 3.1E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 3.1E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_20245 e416b4f7b61208812ff481d7dabb2302 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 3.2E-10 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_00235 7f450a288cd00cd6b045fa7f6ecebdfc 143 Pfam PF06903 VirK protein 26 120 4.5E-37 T 31-10-2018 IPR010694 Uncharacterised protein family VirK BRM88_09905 462a9605efbb29ea880f2da6be2f4dff 349 SUPERFAMILY SSF161111 37 250 4.18E-41 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_09905 462a9605efbb29ea880f2da6be2f4dff 349 Pfam PF01545 Cation efflux family 42 245 5.0E-30 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_09905 462a9605efbb29ea880f2da6be2f4dff 349 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 41 331 3.4E-41 T 31-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BRM88_09905 462a9605efbb29ea880f2da6be2f4dff 349 Gene3D G3DSA:1.20.1510.10 38 248 8.2E-34 T 31-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BRM88_14190 1758d8f40d7c3b7f1858b4290539d08a 438 SUPERFAMILY SSF53098 8 402 1.52E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14190 1758d8f40d7c3b7f1858b4290539d08a 438 Pfam PF13546 DDE superfamily endonuclease 18 290 1.7E-89 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Pfam PF01590 GAF domain 146 296 7.7E-17 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SUPERFAMILY SSF55785 508 632 8.38E-9 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SUPERFAMILY SSF55781 142 310 2.16E-54 T 31-10-2018 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 PRINTS PR01033 Phytochrome signature 159 178 1.1E-18 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 PRINTS PR01033 Phytochrome signature 437 456 1.1E-18 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 PRINTS PR01033 Phytochrome signature 246 267 1.1E-18 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 PRINTS PR01033 Phytochrome signature 345 365 1.1E-18 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 PRINTS PR01033 Phytochrome signature 471 489 1.1E-18 T 31-10-2018 IPR001294 Phytochrome GO:0006355|GO:0009584 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Pfam PF08446 PAS fold 13 72 4.0E-12 T 31-10-2018 IPR013654 PAS fold-2 GO:0006355 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Pfam PF08448 PAS fold 542 632 5.9E-5 T 31-10-2018 IPR013656 PAS fold-4 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SMART SM00091 517 588 6.3 T 31-10-2018 IPR000014 PAS domain BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SMART SM00091 17 86 5.1 T 31-10-2018 IPR000014 PAS domain BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Gene3D G3DSA:3.30.450.20 516 633 1.0E-8 T 31-10-2018 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Gene3D G3DSA:3.30.450.20 17 249 5.9E-152 T 31-10-2018 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SMART SM00065 144 318 0.0019 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SUPERFAMILY SSF55781 338 511 1.96E-41 T 31-10-2018 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Gene3D G3DSA:3.30.450.270 317 502 5.9E-152 T 31-10-2018 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 SUPERFAMILY SSF55785 4 120 2.65E-28 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Pfam PF00360 Phytochrome region 325 510 5.1E-53 T 31-10-2018 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 BRM88_01415 d06e60829d6c2b2c0a62a7a0617342d8 634 Gene3D G3DSA:3.30.450.40 13 484 5.9E-152 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_23970 894c487a86ca434001add345c6a20327 110 SUPERFAMILY SSF47473 24 107 9.06E-14 T 31-10-2018 IPR011992 EF-hand domain pair BRM88_23970 894c487a86ca434001add345c6a20327 110 ProSitePatterns PS00018 EF-hand calcium-binding domain. 32 44 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_23970 894c487a86ca434001add345c6a20327 110 Gene3D G3DSA:1.10.238.10 50 108 2.2E-7 T 31-10-2018 BRM88_23970 894c487a86ca434001add345c6a20327 110 ProSitePatterns PS00018 EF-hand calcium-binding domain. 93 105 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_23970 894c487a86ca434001add345c6a20327 110 Gene3D G3DSA:1.10.238.10 2 49 3.7E-6 T 31-10-2018 BRM88_23970 894c487a86ca434001add345c6a20327 110 Pfam PF13202 EF hand 89 105 0.012 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_23970 894c487a86ca434001add345c6a20327 110 Pfam PF13202 EF hand 26 44 6.6E-5 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_09735 c99f43018b007a17b2369ce024a6689c 184 SUPERFAMILY SSF53271 6 183 3.12E-44 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_09735 c99f43018b007a17b2369ce024a6689c 184 Pfam PF00156 Phosphoribosyl transferase domain 15 167 3.7E-22 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BRM88_09735 c99f43018b007a17b2369ce024a6689c 184 Gene3D G3DSA:3.40.50.2020 4 184 6.2E-47 T 31-10-2018 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Gene3D G3DSA:2.60.40.10 21 236 7.5E-56 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 PIRSF PIRSF000463 25 744 7.7E-270 T 31-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Gene3D G3DSA:3.20.20.80 250 627 5.5E-154 T 31-10-2018 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 SUPERFAMILY SSF81296 35 124 1.23E-10 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 SUPERFAMILY SSF51011 639 743 1.39E-30 T 31-10-2018 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Gene3D G3DSA:2.60.40.1180 638 744 1.6E-33 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 141 222 1.4E-21 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 643 742 5.3E-21 T 31-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 117 743 42.342 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 SUPERFAMILY SSF51445 195 634 1.39E-106 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 SMART SM00642 265 610 2.6E-6 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 Pfam PF00128 Alpha amylase, catalytic domain 290 363 6.6E-5 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00365 fdb875e136443df54faa999fe59bcd19 744 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 132 740 1.9E-257 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 SUPERFAMILY SSF46689 90 180 2.37E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 Gene3D G3DSA:1.10.10.60 126 183 5.5E-21 T 31-10-2018 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 Gene3D G3DSA:3.40.50.2300 7 124 1.2E-25 T 31-10-2018 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 SUPERFAMILY SSF52172 10 119 1.12E-27 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 Pfam PF02954 Bacterial regulatory protein, Fis family 147 180 1.1E-12 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 147 164 1.8E-9 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 164 184 1.8E-9 T 31-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 SMART SM00448 7 118 7.3E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_11595 40ca4920bb0e5afc70b01c6fe5b4fe4d 188 Pfam PF00072 Response regulator receiver domain 10 117 7.6E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 PRINTS PR00171 Sugar transporter signature 36 46 1.6E-24 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 PRINTS PR00171 Sugar transporter signature 384 405 1.6E-24 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 PRINTS PR00171 Sugar transporter signature 287 297 1.6E-24 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 PRINTS PR00171 Sugar transporter signature 119 138 1.6E-24 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 PRINTS PR00171 Sugar transporter signature 407 419 1.6E-24 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 ProSitePatterns PS00216 Sugar transport proteins signature 1. 331 348 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 Pfam PF00083 Sugar (and other) transporter 30 480 7.0E-110 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 18 479 9.9E-111 T 31-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 SUPERFAMILY SSF103473 14 480 3.4E-69 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_15485 1ae060a7fc5873ac99362bf43271b3be 481 Gene3D G3DSA:1.20.1250.20 18 481 5.2E-124 T 31-10-2018 BRM88_14280 b4cbe62a8825ee04903d72b834d4d90c 146 Gene3D G3DSA:3.10.450.30 46 140 3.9E-33 T 31-10-2018 BRM88_14280 b4cbe62a8825ee04903d72b834d4d90c 146 SUPERFAMILY SSF53933 54 137 2.24E-31 T 31-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 BRM88_14280 b4cbe62a8825ee04903d72b834d4d90c 146 Pfam PF00545 ribonuclease 55 135 2.2E-26 T 31-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 BRM88_08845 6b7f72b7076a79cad41cd1ff4502f939 501 Pfam PF07484 Phage Tail Collar Domain 251 302 5.6E-16 T 31-10-2018 IPR011083 Phage tail collar domain BRM88_08845 6b7f72b7076a79cad41cd1ff4502f939 501 SUPERFAMILY SSF88874 239 360 7.59E-22 T 31-10-2018 BRM88_08845 6b7f72b7076a79cad41cd1ff4502f939 501 Gene3D G3DSA:3.90.1340.10 240 304 1.4E-9 T 31-10-2018 IPR037053 Phage tail collar domain superfamily BRM88_20330 56f35ddfd4f329551351b614a71f8e6f 460 Gene3D G3DSA:3.20.20.80 35 314 7.6E-22 T 31-10-2018 BRM88_20330 56f35ddfd4f329551351b614a71f8e6f 460 SUPERFAMILY SSF51445 35 314 1.21E-30 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_20330 56f35ddfd4f329551351b614a71f8e6f 460 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 85 179 2.3E-4 T 31-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_17855 25ead3610ed7fd379e7351f0096f4e1d 137 Pfam PF13936 Helix-turn-helix domain 17 59 2.1E-14 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 Gene3D G3DSA:3.20.20.60 7 298 5.6E-101 T 31-10-2018 BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 257 4.5E-48 T 31-10-2018 BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 7 295 48.093 T 31-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 ProSitePatterns PS00161 Isocitrate lyase signature. 124 129 - T 31-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 SUPERFAMILY SSF51621 7 293 1.35E-98 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_04510 3f9cdc9a32548ebda045085e8a81c485 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 10 294 2.8E-124 T 31-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 BRM88_21930 75349159fd06de6dc9a0bf6072a3d00f 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_21930 75349159fd06de6dc9a0bf6072a3d00f 411 Pfam PF01610 Transposase 155 389 3.6E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_12995 75349159fd06de6dc9a0bf6072a3d00f 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_12995 75349159fd06de6dc9a0bf6072a3d00f 411 Pfam PF01610 Transposase 155 389 3.6E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_11295 9e31e1238d05d15b4df51acd93fe5da7 539 Gene3D G3DSA:1.50.10.140 58 497 3.2E-162 T 31-10-2018 BRM88_11295 9e31e1238d05d15b4df51acd93fe5da7 539 Pfam PF10091 Putative glucoamylase 231 478 3.7E-90 T 31-10-2018 IPR019282 Domain of unknown function DUF2329 BRM88_11295 9e31e1238d05d15b4df51acd93fe5da7 539 PIRSF PIRSF028431 13 506 2.8E-219 T 31-10-2018 IPR016883 Uncharacterised conserved protein UCP028431 BRM88_18925 02a6b29f2f52fd1ef41e250c370c1bf4 267 SUPERFAMILY SSF52540 2 252 5.31E-22 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18925 02a6b29f2f52fd1ef41e250c370c1bf4 267 Pfam PF13469 Sulfotransferase family 5 201 3.6E-16 T 31-10-2018 BRM88_18925 02a6b29f2f52fd1ef41e250c370c1bf4 267 Gene3D G3DSA:3.40.50.300 4 228 4.3E-20 T 31-10-2018 BRM88_08305 88b50daa2dc427fbad07feae449b6c0c 157 Pfam PF12098 Protein of unknown function (DUF3574) 48 157 1.3E-33 T 31-10-2018 IPR021957 Protein of unknown function DUF3574 BRM88_20645 482b633a4d2877613694d7295d8a78f7 366 Pfam PF00534 Glycosyl transferases group 1 222 285 4.2E-7 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_20645 482b633a4d2877613694d7295d8a78f7 366 Gene3D G3DSA:3.40.50.2000 166 330 1.1E-17 T 31-10-2018 BRM88_20645 482b633a4d2877613694d7295d8a78f7 366 SUPERFAMILY SSF53756 113 329 8.79E-19 T 31-10-2018 BRM88_05915 aaddee983b4e76e26fb2d17fd57bf3c3 177 PIRSF PIRSF016481 3 177 6.1E-59 T 31-10-2018 IPR007446 Pilus assembly protein PilP BRM88_05915 aaddee983b4e76e26fb2d17fd57bf3c3 177 Gene3D G3DSA:2.30.30.830 82 175 4.9E-30 T 31-10-2018 BRM88_05915 aaddee983b4e76e26fb2d17fd57bf3c3 177 Pfam PF04351 Pilus assembly protein, PilP 34 174 2.1E-46 T 31-10-2018 IPR007446 Pilus assembly protein PilP BRM88_04790 9aa302e65c703f724d484874b9014821 625 Pfam PF13667 ThiC-associated domain 22 98 1.3E-29 T 31-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BRM88_04790 9aa302e65c703f724d484874b9014821 625 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 138 590 1.3E-214 T 31-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BRM88_04790 9aa302e65c703f724d484874b9014821 625 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 138 591 100.028 T 31-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BRM88_04790 9aa302e65c703f724d484874b9014821 625 Gene3D G3DSA:3.20.20.540 209 522 2.5E-153 T 31-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BRM88_04790 9aa302e65c703f724d484874b9014821 625 Pfam PF01964 Radical SAM ThiC family 139 586 1.4E-199 T 31-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BRM88_20125 5369a59d61fe2afd3becd03155ab0214 117 PIRSF PIRSF021239 6 117 6.1E-51 T 31-10-2018 IPR007437 Protein of unknown function DUF486 BRM88_20125 5369a59d61fe2afd3becd03155ab0214 117 Pfam PF04342 Putative member of DMT superfamily (DUF486) 13 115 6.8E-45 T 31-10-2018 IPR007437 Protein of unknown function DUF486 BRM88_16715 971984a9645b98310c516ba258c96b64 114 Gene3D G3DSA:2.60.220.20 1 83 2.2E-24 T 31-10-2018 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 Gene3D G3DSA:3.30.200.20 90 182 5.6E-22 T 31-10-2018 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 Pfam PF03781 Sulfatase-modifying factor enzyme 1 825 904 3.4E-11 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 SUPERFAMILY SSF56436 825 966 2.59E-18 T 31-10-2018 IPR016187 C-type lectin fold BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 Gene3D G3DSA:3.90.1580.10 813 907 1.1E-7 T 31-10-2018 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 Gene3D G3DSA:1.10.510.10 183 377 6.0E-33 T 31-10-2018 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 SUPERFAMILY SSF56112 100 365 1.18E-53 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 228 240 - T 31-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 107 136 - T 31-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 BRM88_16220 13b76781590693b7ca6bfaa5902ec8ad 967 Pfam PF00069 Protein kinase domain 104 366 5.6E-35 T 31-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.6E-5 T 31-10-2018 BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 410 416 2.6E-5 T 31-10-2018 BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 Gene3D G3DSA:3.30.9.10 138 357 2.6E-61 T 31-10-2018 BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 Gene3D G3DSA:3.50.50.60 106 398 2.6E-61 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 Pfam PF01266 FAD dependent oxidoreductase 7 397 3.0E-66 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 SUPERFAMILY SSF51905 7 415 2.14E-53 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 Gene3D G3DSA:3.50.50.60 3 74 2.0E-11 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_17555 dac766654333d1c48ae8597c6c4a88b0 416 SUPERFAMILY SSF54373 270 357 1.44E-14 T 31-10-2018 BRM88_10645 62c694ff922e6dd580cfcfbea4b0e272 310 Pfam PF13673 Acetyltransferase (GNAT) domain 50 124 1.5E-10 T 31-10-2018 IPR000182 GNAT domain BRM88_10645 62c694ff922e6dd580cfcfbea4b0e272 310 SUPERFAMILY SSF55729 8 140 4.8E-20 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_10645 62c694ff922e6dd580cfcfbea4b0e272 310 Gene3D G3DSA:3.40.630.30 8 134 2.0E-18 T 31-10-2018 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 Gene3D G3DSA:3.20.20.70 131 315 4.9E-48 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 SUPERFAMILY SSF55811 6 131 5.15E-35 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 Gene3D G3DSA:3.90.79.10 5 130 2.8E-34 T 31-10-2018 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 Pfam PF02581 Thiamine monophosphate synthase 136 311 2.3E-41 T 31-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 TIGRFAM TIGR00586 mutt: mutator mutT protein 7 132 2.2E-33 T 31-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 PRINTS PR00502 NUDIX hydrolase family signature 37 51 2.5E-8 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 PRINTS PR00502 NUDIX hydrolase family signature 51 66 2.5E-8 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 Pfam PF00293 NUDIX domain 11 124 1.7E-19 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_20350 13f0aeb1ffd45f12fdcde664034978c2 315 SUPERFAMILY SSF51391 118 313 2.49E-49 T 31-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Gene3D G3DSA:3.30.70.2120 173 297 3.9E-86 T 31-10-2018 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Pfam PF00700 Bacterial flagellin C-terminal helical region 313 398 3.0E-27 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Gene3D G3DSA:1.20.58.1830 2 47 5.5E-5 T 31-10-2018 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 SUPERFAMILY SSF64518 1 399 4.97E-97 T 31-10-2018 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Gene3D G3DSA:1.10.8.410 349 399 4.7E-23 T 31-10-2018 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 6.1E-40 T 31-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 PRINTS PR00207 Flagellin signature 37 54 2.6E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 PRINTS PR00207 Flagellin signature 76 95 2.6E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 PRINTS PR00207 Flagellin signature 111 134 2.6E-23 T 31-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BRM88_13585 d54e97005341a1eed4bb99cf775b1d06 399 Gene3D G3DSA:1.20.1330.10 48 348 3.9E-86 T 31-10-2018 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 Pfam PF05569 BlaR1 peptidase M56 8 256 1.2E-70 T 31-10-2018 IPR008756 Peptidase M56 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 Gene3D G3DSA:3.30.1150.10 299 387 1.5E-23 T 31-10-2018 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 PRINTS PR01374 Gram-negative bacterial tonB protein signature 304 325 3.1E-5 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 PRINTS PR01374 Gram-negative bacterial tonB protein signature 325 343 3.1E-5 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 PRINTS PR01374 Gram-negative bacterial tonB protein signature 344 361 3.1E-5 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 310 386 2.3E-18 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 309 386 1.2E-19 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_06065 4a31599de34cb83da1a56bddaeff541b 438 SUPERFAMILY SSF74653 308 384 2.22E-20 T 31-10-2018 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 Gene3D G3DSA:3.30.930.10 1 320 8.4E-89 T 31-10-2018 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 11 315 1.4E-109 T 31-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 204 220 2.2E-6 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 26 36 2.2E-6 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 PRINTS PR00982 Lysyl-tRNA synthetase signature 94 111 2.2E-6 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 SUPERFAMILY SSF55681 9 315 1.78E-64 T 31-10-2018 BRM88_12765 46c386a70b2e85bf6886bbba7d52b19b 320 Pfam PF00152 tRNA synthetases class II (D, K and N) 9 315 3.5E-34 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Gene3D G3DSA:3.40.50.300 175 350 1.3E-47 T 31-10-2018 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 356 434 1.7E-22 T 31-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Pfam PF01926 50S ribosome-binding GTPase 5 120 3.9E-26 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Pfam PF01926 50S ribosome-binding GTPase 180 298 5.2E-24 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 SMART SM00382 1 148 4.7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 SMART SM00382 177 325 0.036 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 SUPERFAMILY SSF52540 1 166 1.37E-47 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Hamap MF_00195 GTPase Der [der]. 2 437 36.668 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 PIRSF PIRSF006485 1 442 4.0E-166 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 SUPERFAMILY SSF52540 171 440 8.8E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Gene3D G3DSA:3.40.50.300 5 167 4.7E-43 T 31-10-2018 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 434 9.1E-165 T 31-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 159 3.4E-25 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 179 344 7.5E-26 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 73 91 1.7E-8 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.7E-8 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_13320 b3605548870dfb2f4548b3e47db2c8b1 465 Gene3D G3DSA:3.30.300.20 355 436 2.6E-19 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_14415 5312fcbb9252eaed2e396f8b7db89377 445 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 12 356 2.3E-126 T 31-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BRM88_14415 5312fcbb9252eaed2e396f8b7db89377 445 Pfam PF02601 Exonuclease VII, large subunit 125 438 1.5E-92 T 31-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 BRM88_14415 5312fcbb9252eaed2e396f8b7db89377 445 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 6 441 30.336 T 31-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BRM88_14415 5312fcbb9252eaed2e396f8b7db89377 445 Pfam PF13742 OB-fold nucleic acid binding domain 12 102 2.8E-27 T 31-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 183 4.1E-5 T 31-10-2018 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 Gene3D G3DSA:3.40.50.720 1 244 5.6E-82 T 31-10-2018 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.5E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.5E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.5E-12 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.0E-44 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 243 3.7E-60 T 31-10-2018 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 4 244 3.2E-123 T 31-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 BRM88_14365 2d032b5a027acda68ffa5e30b7731194 246 SUPERFAMILY SSF51735 4 244 5.56E-83 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06810 371c75aea1332bb0efa46b51e086a5b1 135 Pfam PF01479 S4 domain 11 56 3.1E-8 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_06810 371c75aea1332bb0efa46b51e086a5b1 135 Gene3D G3DSA:3.10.290.10 4 109 2.6E-32 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_06810 371c75aea1332bb0efa46b51e086a5b1 135 SUPERFAMILY SSF55174 8 105 2.09E-23 T 31-10-2018 BRM88_06810 371c75aea1332bb0efa46b51e086a5b1 135 SMART SM00363 11 73 0.0023 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 SUPERFAMILY SSF53383 8 417 2.95E-179 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 6.6E-181 T 31-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 31-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 Gene3D G3DSA:3.90.1150.10 11 394 1.8E-185 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.41 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 PIRSF PIRSF000412 2 417 7.1E-167 T 31-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BRM88_20585 a6801e8109b89f22d41eab761c8abe67 417 Gene3D G3DSA:3.40.640.10 37 289 1.8E-185 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 725 886 1.9E-32 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 36 535 7.1E-76 T 31-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Gene3D G3DSA:3.55.50.10 113 218 6.9E-88 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 SUPERFAMILY SSF69279 223 417 1.48E-17 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Gene3D G3DSA:2.30.110.50 26 355 6.9E-88 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 SUPERFAMILY SSF69279 23 214 4.25E-50 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 584 683 1.8E-26 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Gene3D G3DSA:2.40.50.230 423 535 1.4E-34 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 23 355 2.5E-60 T 31-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 SUPERFAMILY SSF69255 429 531 1.26E-22 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Pfam PF05954 Phage late control gene D protein (GPD) 45 356 8.6E-79 T 31-10-2018 BRM88_14930 ce9b1f01c5d7bad30343162a46121f57 920 Gene3D G3DSA:3.30.1920.30 249 311 6.9E-88 T 31-10-2018 BRM88_21180 773887803abb93bcb89a7ff432524318 372 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 14 370 27.848 T 31-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_21180 773887803abb93bcb89a7ff432524318 372 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 325 349 - T 31-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_21180 773887803abb93bcb89a7ff432524318 372 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 367 9.9E-118 T 31-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_21180 773887803abb93bcb89a7ff432524318 372 Pfam PF01098 Cell cycle protein 21 367 4.4E-95 T 31-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_15285 56198c72bd55f1ef38394136d806641d 560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 213 224 - T 31-10-2018 IPR020845 AMP-binding, conserved site BRM88_15285 56198c72bd55f1ef38394136d806641d 560 Pfam PF00501 AMP-binding enzyme 31 465 1.5E-114 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_15285 56198c72bd55f1ef38394136d806641d 560 SUPERFAMILY SSF56801 23 557 6.54E-154 T 31-10-2018 BRM88_15285 56198c72bd55f1ef38394136d806641d 560 Gene3D G3DSA:3.40.50.12780 14 456 1.2E-118 T 31-10-2018 BRM88_15285 56198c72bd55f1ef38394136d806641d 560 Gene3D G3DSA:3.30.300.310 461 560 3.7E-31 T 31-10-2018 BRM88_15285 56198c72bd55f1ef38394136d806641d 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 474 548 2.5E-18 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BRM88_10110 5838f5842efc4d9e9bfa874b43c5154b 258 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 58 236 5.2E-34 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_10110 5838f5842efc4d9e9bfa874b43c5154b 258 Pfam PF02592 Putative vitamin uptake transporter 62 234 9.7E-42 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_10110 5838f5842efc4d9e9bfa874b43c5154b 258 Hamap MF_02088 Probable queuosine precursor transporter. 9 247 15.863 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_00740 d9c374c1bb3fa4c33c010f5bf04c2e8a 385 Pfam PF02687 FtsX-like permease family 290 376 4.4E-9 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BRM88_00740 d9c374c1bb3fa4c33c010f5bf04c2e8a 385 Pfam PF12704 MacB-like periplasmic core domain 23 229 1.3E-8 T 31-10-2018 IPR025857 MacB-like periplasmic core domain BRM88_21375 134b27ac7e5d2932bc4e4be1ac9059cb 645 SUPERFAMILY SSF53448 143 436 1.69E-23 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_21375 134b27ac7e5d2932bc4e4be1ac9059cb 645 Pfam PF13632 Glycosyl transferase family group 2 242 465 2.7E-15 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_21375 134b27ac7e5d2932bc4e4be1ac9059cb 645 Gene3D G3DSA:3.90.550.10 137 370 2.5E-15 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_21375 134b27ac7e5d2932bc4e4be1ac9059cb 645 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 6 645 48.408 T 31-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 Gene3D G3DSA:3.100.10.20 6 84 1.7E-17 T 31-10-2018 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 7 336 4.4E-81 T 31-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 Gene3D G3DSA:1.20.120.920 86 343 1.9E-74 T 31-10-2018 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 TIGRFAM TIGR03640 cas1_DVULG: CRISPR-associated endonuclease Cas1, subtype I-C/DVULG 4 343 6.4E-157 T 31-10-2018 IPR019856 CRISPR-associated protein Cas1, DVULG subtype GO:0004520|GO:0043571|GO:0046872 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 2 329 27.441 T 31-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 BRM88_04380 9fab3306d5d04c66b4f96687198a822d 344 Pfam PF01867 CRISPR associated protein Cas1 8 299 2.9E-103 T 31-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 BRM88_15995 691d38c2ef4c33eed532d728f40e5048 143 SUPERFAMILY SSF51182 4 127 2.2E-38 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_15995 691d38c2ef4c33eed532d728f40e5048 143 Pfam PF05523 WxcM-like, C-terminal 2 130 5.0E-47 T 31-10-2018 IPR008894 WxcM-like, C-terminal KEGG: 00523+5.3.2.3|MetaCyc: PWY-6953|MetaCyc: PWY-7688 BRM88_15995 691d38c2ef4c33eed532d728f40e5048 143 Gene3D G3DSA:2.60.120.10 1 138 5.7E-45 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 33 196 9.1E-34 T 31-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 SUPERFAMILY SSF46785 110 185 3.87E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 SUPERFAMILY SSF46785 26 107 1.16E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 Pfam PF04079 Segregation and condensation complex subunit ScpB 33 194 3.0E-51 T 31-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 Gene3D G3DSA:1.10.10.10 25 107 3.2E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_11265 3cf6f1e4eb62370e2d4c0c0d7470bdce 424 Gene3D G3DSA:1.10.10.10 108 205 5.6E-34 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 SUPERFAMILY SSF47384 113 183 1.69E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 Pfam PF00512 His Kinase A (phospho-acceptor) domain 113 182 3.4E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 SMART SM00388 113 183 5.9E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 Gene3D G3DSA:1.10.287.130 118 180 2.7E-18 T 31-10-2018 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 280 3.5E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 313 3.5E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 319 332 3.5E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 PRINTS PR00344 Bacterial sensor protein C-terminal signature 284 294 3.5E-13 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 226 333 2.1E-17 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 Gene3D G3DSA:3.30.565.10 182 339 8.4E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 SUPERFAMILY SSF55874 174 336 6.81E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12605 5b7b2c5ce13464ce2dfb1d37c6dba12e 340 SMART SM00387 225 335 6.0E-29 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 Gene3D G3DSA:3.90.79.10 160 295 1.6E-35 T 31-10-2018 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 Gene3D G3DSA:3.90.79.20 68 159 6.5E-11 T 31-10-2018 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 49 125 1.2E-4 T 31-10-2018 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 128 158 5.6E-8 T 31-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 ProSitePatterns PS00893 Nudix box signature. 193 214 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 SUPERFAMILY SSF55811 112 292 2.98E-41 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_02655 a356c32e1f4fb829bc0a917d2cf3f611 296 Pfam PF00293 NUDIX domain 164 269 1.3E-15 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 Pfam PF00575 S1 RNA binding domain 33 114 3.5E-12 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 Hamap MF_00970 Ribonuclease E [rne]. 1 1129 35.063 T 31-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 Gene3D G3DSA:3.40.1260.20 396 501 3.1E-34 T 31-10-2018 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 10 420 6.2E-163 T 31-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 Gene3D G3DSA:2.40.50.140 28 121 5.2E-32 T 31-10-2018 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 SMART SM00316 34 115 3.0E-10 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 SUPERFAMILY SSF50249 37 121 3.23E-18 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_16435 f7949e252066c73b75c764c1c0cf539d 1237 Pfam PF10150 Ribonuclease E/G family 117 386 1.2E-95 T 31-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BRM88_01035 641dcfda16e24467138d0cfa17965e64 203 Pfam PF09851 Short C-terminal domain 175 200 2.2E-8 T 31-10-2018 IPR018649 SHOCT domain BRM88_01035 641dcfda16e24467138d0cfa17965e64 203 Pfam PF14470 Bacterial PH domain 28 121 2.0E-18 T 31-10-2018 IPR039519 YokE-like, PH domain BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 Pfam PF00347 Ribosomal protein L6 12 80 5.0E-16 T 31-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 Pfam PF00347 Ribosomal protein L6 88 162 7.2E-19 T 31-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 PIRSF PIRSF002162 1 175 9.4E-42 T 31-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 Gene3D G3DSA:3.90.930.12 81 175 9.1E-38 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 PRINTS PR00059 Ribosomal protein L6 signature 139 160 3.5E-33 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 PRINTS PR00059 Ribosomal protein L6 signature 69 94 3.5E-33 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 PRINTS PR00059 Ribosomal protein L6 signature 97 113 3.5E-33 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 174 36.37 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 174 1.2E-68 T 31-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 SUPERFAMILY SSF56053 81 174 6.62E-35 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 152 160 - T 31-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 Gene3D G3DSA:3.90.930.12 1 80 7.4E-23 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19040 9d74e78a4890e406d279e486158a6e21 175 SUPERFAMILY SSF56053 2 80 6.24E-19 T 31-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_01620 593af32053500e06c86ca4641f642a12 880 Gene3D G3DSA:3.20.20.520 206 500 9.6E-127 T 31-10-2018 BRM88_01620 593af32053500e06c86ca4641f642a12 880 Gene3D G3DSA:1.20.58.2150 503 685 2.2E-58 T 31-10-2018 BRM88_01620 593af32053500e06c86ca4641f642a12 880 Pfam PF15979 Glycosyl hydrolase family 115 202 543 7.4E-143 T 31-10-2018 IPR031924 Glycosyl hydrolase family 115 BRM88_01620 593af32053500e06c86ca4641f642a12 880 Gene3D G3DSA:2.60.120.1620 702 880 1.5E-34 T 31-10-2018 BRM88_01620 593af32053500e06c86ca4641f642a12 880 Gene3D G3DSA:3.30.379.10 41 205 1.5E-46 T 31-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BRM88_04340 270971533b8865c9f87fc8ef5245a417 385 SUPERFAMILY SSF56112 47 340 2.76E-40 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_04340 270971533b8865c9f87fc8ef5245a417 385 Gene3D G3DSA:3.90.1200.10 133 358 2.6E-20 T 31-10-2018 BRM88_04340 270971533b8865c9f87fc8ef5245a417 385 Pfam PF01636 Phosphotransferase enzyme family 59 308 3.0E-28 T 31-10-2018 IPR002575 Aminoglycoside phosphotransferase BRM88_21805 ce6712435c02511f5c00a58889ada49c 269 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 1 114 1.3E-17 T 31-10-2018 IPR002654 Glycosyl transferase, family 25 BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 Gene3D G3DSA:3.40.50.1820 19 222 5.1E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 SUPERFAMILY SSF53474 40 163 2.84E-6 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 Pfam PF06057 Bacterial virulence protein (VirJ) 266 453 3.1E-83 T 31-10-2018 IPR010333 Bacterial virulence BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 Gene3D G3DSA:3.40.50.1820 253 452 2.9E-10 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 PIRSF PIRSF029063 1 456 7.2E-176 T 31-10-2018 IPR011225 Type IV secretory pathway, VirJ component BRM88_09970 128d6acf8b7b46995faff1cea0ee3c39 456 SUPERFAMILY SSF53474 260 453 7.5E-21 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14975 4b6fbfaf7443621451f79b45baddf229 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_14975 4b6fbfaf7443621451f79b45baddf229 439 SUPERFAMILY SSF53098 7 403 6.9E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_23990 4b30d4d940c6997b61442c41f69455c1 345 Gene3D G3DSA:3.40.1090.10 39 147 8.4E-22 T 31-10-2018 BRM88_23990 4b30d4d940c6997b61442c41f69455c1 345 Gene3D G3DSA:3.40.1090.20 168 244 2.5E-7 T 31-10-2018 BRM88_23990 4b30d4d940c6997b61442c41f69455c1 345 SUPERFAMILY SSF52151 38 296 6.02E-57 T 31-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BRM88_23990 4b30d4d940c6997b61442c41f69455c1 345 Pfam PF01734 Patatin-like phospholipase 51 207 5.7E-27 T 31-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 SUPERFAMILY SSF101898 193 490 3.14E-28 T 31-10-2018 BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 Pfam PF01436 NHL repeat 246 270 7.1E-5 T 31-10-2018 IPR001258 NHL repeat GO:0005515 BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 Pfam PF01436 NHL repeat 193 216 8.4E-5 T 31-10-2018 IPR001258 NHL repeat GO:0005515 BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 Gene3D G3DSA:3.40.30.10 23 176 1.5E-19 T 31-10-2018 BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 SUPERFAMILY SSF52833 33 157 9.76E-19 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 Gene3D G3DSA:2.120.10.30 333 444 5.3E-17 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_12115 ac7d1f5f78479c96b8e92af12bfc89f8 499 Gene3D G3DSA:2.120.10.30 177 332 1.1E-25 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_10665 68d0ef47a088cc54837e3acafec44703 166 Pfam PF11259 Protein of unknown function (DUF3060) 107 159 1.7E-10 T 31-10-2018 IPR021417 Protein of unknown function DUF3060 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 49 66 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 160 186 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 208 232 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 66 86 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 125 145 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 104 124 1.1E-50 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 49 231 5.6E-73 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_16035 e6f0c1929e284a7ea868b1ebeffa7f2b 252 Pfam PF01578 Cytochrome C assembly protein 45 188 1.1E-27 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 Gene3D G3DSA:3.40.50.620 1 308 3.3E-122 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 Pfam PF09190 DALR domain 350 419 3.7E-10 T 31-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 SUPERFAMILY SSF52374 6 317 7.68E-91 T 31-10-2018 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 20 316 2.2E-113 T 31-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 SUPERFAMILY SSF47323 319 475 1.44E-30 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 Gene3D G3DSA:1.20.120.640 310 476 1.3E-36 T 31-10-2018 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 475 1.2E-148 T 31-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 64 73 7.7E-29 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 193 211 7.7E-29 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 28 39 7.7E-29 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 7.7E-29 T 31-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 5 476 37.213 T 31-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BRM88_14105 8cf35e639dbee24410dc204fc27b79a5 476 SMART SM00840 349 419 2.9E-11 T 31-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 287 2.5E-127 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 255 264 4.9E-42 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 204 221 4.9E-42 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 133 147 4.9E-42 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 233 244 4.9E-42 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 167 185 4.9E-42 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 Gene3D G3DSA:3.90.226.10 28 291 1.2E-85 T 31-10-2018 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 SUPERFAMILY SSF52096 28 288 5.29E-86 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 Pfam PF01039 Carboxyl transferase domain 110 243 5.8E-17 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BRM88_17355 4313cd2dad40b7ac26f3b7415006a07b 295 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 285 37.927 T 31-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BRM88_06740 fd439618f29ee75290ab99a836ae710c 349 Gene3D G3DSA:2.70.98.10 6 337 7.8E-104 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BRM88_06740 fd439618f29ee75290ab99a836ae710c 349 SUPERFAMILY SSF74650 3 331 3.83E-94 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_06740 fd439618f29ee75290ab99a836ae710c 349 Pfam PF01263 Aldose 1-epimerase 16 330 2.0E-75 T 31-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BRM88_06740 fd439618f29ee75290ab99a836ae710c 349 PIRSF PIRSF005096 1 334 4.1E-96 T 31-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BRM88_03430 c168dec12c14663c649c0650f5ad8bdc 284 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 31-10-2018 IPR000540 Flagellar motor protein MotA, conserved site BRM88_03430 c168dec12c14663c649c0650f5ad8bdc 284 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 5.8E-123 T 31-10-2018 IPR022522 Flagellar motor stator, MotA BRM88_03430 c168dec12c14663c649c0650f5ad8bdc 284 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 232 8.6E-8 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BRM88_12060 1eeb3e353d1541bec04988412d382199 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_12060 1eeb3e353d1541bec04988412d382199 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_12060 1eeb3e353d1541bec04988412d382199 321 Pfam PF12760 Transposase zinc-ribbon domain 23 69 8.1E-11 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_06600 7ae866d559ed75e23737b4376bf13ec0 182 Pfam PF08282 haloacid dehalogenase-like hydrolase 94 151 5.0E-6 T 31-10-2018 BRM88_06600 7ae866d559ed75e23737b4376bf13ec0 182 Gene3D G3DSA:3.40.50.1000 1 182 1.9E-55 T 31-10-2018 IPR023214 HAD superfamily BRM88_06600 7ae866d559ed75e23737b4376bf13ec0 182 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 20 171 1.9E-37 T 31-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_06600 7ae866d559ed75e23737b4376bf13ec0 182 PIRSF PIRSF006118 7 181 3.5E-67 T 31-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_06600 7ae866d559ed75e23737b4376bf13ec0 182 SUPERFAMILY SSF56784 16 178 5.25E-39 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_18760 bd2424c3adbff0a93950820f1eb082a0 327 Gene3D G3DSA:3.40.1730.10 7 191 6.0E-15 T 31-10-2018 IPR038225 T6S-associated protein TagF superfamily BRM88_18760 bd2424c3adbff0a93950820f1eb082a0 327 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 10 142 9.3E-35 T 31-10-2018 IPR017748 T6S-associated protein TagF BRM88_18760 bd2424c3adbff0a93950820f1eb082a0 327 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 11 137 3.4E-22 T 31-10-2018 IPR017748 T6S-associated protein TagF BRM88_24510 27119c3dd8ae8aa1c36dfa69af7ba846 458 Pfam PF01609 Transposase DDE domain 284 421 7.7E-11 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_24510 27119c3dd8ae8aa1c36dfa69af7ba846 458 Pfam PF05598 Transposase domain (DUF772) 59 133 3.4E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_02190 47f1e36e269c713ae0fa1d635d37b1c7 371 Gene3D G3DSA:3.40.50.1820 91 345 3.9E-36 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02190 47f1e36e269c713ae0fa1d635d37b1c7 371 Pfam PF12697 Alpha/beta hydrolase family 112 322 2.8E-15 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_02190 47f1e36e269c713ae0fa1d635d37b1c7 371 SUPERFAMILY SSF53474 103 342 1.35E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02925 82ce256cd446021daa50d4ebb99de219 458 Pfam PF01554 MatE 27 185 1.8E-24 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_02925 82ce256cd446021daa50d4ebb99de219 458 Pfam PF01554 MatE 253 412 1.1E-28 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_02925 82ce256cd446021daa50d4ebb99de219 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 427 3.2E-76 T 31-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 Gene3D G3DSA:3.40.50.10490 12 204 2.1E-59 T 31-10-2018 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 54 323 3.7E-111 T 31-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 PIRSF PIRSF004692 5 333 1.9E-133 T 31-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 SMART SM00116 219 267 2.7E-5 T 31-10-2018 IPR000644 CBS domain BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 SMART SM00116 284 332 0.002 T 31-10-2018 IPR000644 CBS domain BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 Gene3D G3DSA:3.10.580.10 205 330 1.1E-46 T 31-10-2018 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 Pfam PF01380 SIS domain 50 181 9.9E-32 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 Pfam PF00571 CBS domain 278 330 2.1E-7 T 31-10-2018 IPR000644 CBS domain BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 Pfam PF00571 CBS domain 212 267 5.5E-9 T 31-10-2018 IPR000644 CBS domain BRM88_06605 b1236e386267b7f3c4ca40d7ca67f478 333 SUPERFAMILY SSF53697 21 331 2.67E-69 T 31-10-2018 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 SMART SM01130 2 289 1.1E-108 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 279 2.4E-80 T 31-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 2.7E-26 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 2.7E-26 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 2.7E-26 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 2.7E-26 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 287 54.731 T 31-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 Pfam PF00701 Dihydrodipicolinate synthetase family 3 284 4.6E-77 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 Gene3D G3DSA:3.20.20.70 2 289 3.4E-93 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 SUPERFAMILY SSF51569 3 286 8.69E-86 T 31-10-2018 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 PIRSF PIRSF001365 2 298 1.3E-82 T 31-10-2018 IPR002220 DapA-like GO:0016829 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 31-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_15550 6316381c6c0ee0401c6e162ae7634027 302 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 31-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 Gene3D G3DSA:3.90.45.10 1 170 2.3E-62 T 31-10-2018 IPR036821 Peptide deformylase superfamily BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 PRINTS PR01576 Peptide deformylase signature 123 152 2.0E-38 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 PRINTS PR01576 Peptide deformylase signature 104 122 2.0E-38 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 PRINTS PR01576 Peptide deformylase signature 36 65 2.0E-38 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 PRINTS PR01576 Peptide deformylase signature 92 103 2.0E-38 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 Pfam PF01327 Polypeptide deformylase 5 155 6.1E-53 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 PIRSF PIRSF004749 1 170 1.2E-57 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 162 5.1E-53 T 31-10-2018 IPR023635 Peptide deformylase BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 SUPERFAMILY SSF56420 3 167 3.14E-62 T 31-10-2018 IPR036821 Peptide deformylase superfamily BRM88_02990 132277d758d346c7ecf0f4ff12dabaa0 170 Hamap MF_00163 Peptide deformylase [def]. 2 165 30.961 T 31-10-2018 IPR023635 Peptide deformylase BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 Gene3D G3DSA:3.40.1410.10 95 255 9.5E-35 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 SUPERFAMILY SSF64288 81 255 5.97E-41 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 29 92 1.4E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 Pfam PF07702 UTRA domain 114 247 3.8E-32 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 SUPERFAMILY SSF46785 22 94 9.89E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 SMART SM00345 33 92 3.5E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 66 82 4.2E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 66 4.2E-7 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 SMART SM00866 112 248 3.5E-27 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_20920 15c1c4a4040c44eb59daab2e7093dcf6 255 Gene3D G3DSA:1.10.10.10 17 93 4.2E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_08890 1f2c9722494a7cc44c0836f3d9e359bb 118 Pfam PF16931 Putative phage holin 1 114 1.4E-33 T 31-10-2018 IPR032637 Putative phage holin-like BRM88_05420 831465de0a9dec17460aeca6ad9b5014 650 Gene3D G3DSA:3.10.620.30 319 486 1.0E-23 T 31-10-2018 BRM88_05420 831465de0a9dec17460aeca6ad9b5014 650 Pfam PF01841 Transglutaminase-like superfamily 355 470 3.5E-26 T 31-10-2018 IPR002931 Transglutaminase-like BRM88_05420 831465de0a9dec17460aeca6ad9b5014 650 SMART SM00460 401 472 2.7E-20 T 31-10-2018 IPR002931 Transglutaminase-like BRM88_05420 831465de0a9dec17460aeca6ad9b5014 650 SUPERFAMILY SSF54001 277 594 3.92E-63 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_05420 831465de0a9dec17460aeca6ad9b5014 650 Pfam PF11992 Domain of unknown function (DUF3488) 13 326 2.5E-83 T 31-10-2018 IPR021878 Protein of unknown function DUF3488 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 Pfam PF00270 DEAD/DEAH box helicase 215 362 9.0E-13 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 SUPERFAMILY SSF52540 196 375 1.41E-41 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 SMART SM00490 496 592 2.3E-10 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 Hamap MF_00983 Probable primosomal protein N' [priA]. 10 739 23.535 T 31-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 Gene3D G3DSA:1.10.8.630 6 118 1.8E-29 T 31-10-2018 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 Pfam PF00271 Helicase conserved C-terminal domain 498 591 1.2E-6 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 Gene3D G3DSA:3.40.50.300 190 378 1.6E-74 T 31-10-2018 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 SUPERFAMILY SSF52540 464 613 4.43E-21 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 TIGRFAM TIGR00595 priA: primosomal protein N' 220 737 5.4E-173 T 31-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BRM88_02900 f3f419c85737afa0d77e2ca6db5e4ff4 740 SMART SM00487 195 391 3.3E-21 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 Gene3D G3DSA:2.60.40.10 562 648 4.3E-17 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 Gene3D G3DSA:2.60.40.10 1 108 1.6E-18 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 SUPERFAMILY SSF49303 567 643 1.08E-17 T 31-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 SUPERFAMILY SSF49303 473 565 7.62E-13 T 31-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 Gene3D G3DSA:3.20.20.80 109 462 1.2E-122 T 31-10-2018 BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 SUPERFAMILY SSF51445 108 464 7.39E-107 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 126 262 2.6E-4 T 31-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 SUPERFAMILY SSF49303 1 109 6.04E-18 T 31-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BRM88_09315 2c762b4c25554f5979a35700e66752a3 657 Pfam PF00703 Glycosyl hydrolases family 2 1 110 7.2E-8 T 31-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BRM88_01510 ab1db6a48903164970823cee0a0e6688 249 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 3 249 6.0E-76 T 31-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BRM88_01510 ab1db6a48903164970823cee0a0e6688 249 Pfam PF02405 Permease MlaE 35 245 6.5E-68 T 31-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 BRM88_07725 4dd7cd187eb458b0993b315009adf03b 127 Pfam PF06123 Inner membrane protein CreD 1 55 9.1E-8 T 31-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Gene3D G3DSA:3.30.930.10 223 531 1.2E-121 T 31-10-2018 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 529 7.1E-40 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 SUPERFAMILY SSF52954 530 631 1.66E-31 T 31-10-2018 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.551 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Gene3D G3DSA:3.10.20.30 1 62 4.1E-24 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Gene3D G3DSA:3.30.54.20 130 187 6.7E-60 T 31-10-2018 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 4.0E-215 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 174 219 1.9E-14 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Gene3D G3DSA:3.40.50.800 532 634 8.5E-32 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 SMART SM00863 170 219 1.6E-20 T 31-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 SUPERFAMILY SSF55681 243 526 4.4E-94 T 31-10-2018 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Gene3D G3DSA:3.30.980.10 69 222 6.7E-60 T 31-10-2018 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Pfam PF03129 Anticodon binding domain 541 630 2.5E-21 T 31-10-2018 IPR004154 Anticodon-binding BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 SUPERFAMILY SSF55186 63 241 1.09E-62 T 31-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 SUPERFAMILY SSF81271 2 61 2.35E-15 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 Pfam PF02824 TGS domain 2 61 4.6E-12 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 6.4E-51 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 6.4E-51 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 6.4E-51 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 6.4E-51 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_17045 3de935eb85a14345a2e29e3594534b99 634 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 6.4E-51 T 31-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BRM88_05580 9a71f7b28bfc31c841c54428c25f358d 814 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 171 2.0E-17 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_05580 9a71f7b28bfc31c841c54428c25f358d 814 Gene3D G3DSA:2.170.130.10 36 182 3.2E-20 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_05580 9a71f7b28bfc31c841c54428c25f358d 814 SUPERFAMILY SSF56935 36 814 1.1E-87 T 31-10-2018 BRM88_05580 9a71f7b28bfc31c841c54428c25f358d 814 Pfam PF00593 TonB dependent receptor 324 812 2.8E-24 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_05580 9a71f7b28bfc31c841c54428c25f358d 814 Gene3D G3DSA:2.40.170.20 191 814 2.2E-49 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Gene3D G3DSA:3.20.20.140 1 281 6.7E-78 T 31-10-2018 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 304 748 6.5E-166 T 31-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 994 0.0 T 31-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 SUPERFAMILY SSF50249 1028 1098 4.86E-5 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Pfam PF14579 Helix-hairpin-helix motif 823 912 1.6E-26 T 31-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Pfam PF02811 PHP domain 8 183 3.2E-24 T 31-10-2018 IPR004013 PHP domain GO:0003824 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 SMART SM00481 7 88 6.1E-15 T 31-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Gene3D G3DSA:1.10.10.1600 443 527 3.9E-27 T 31-10-2018 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 SUPERFAMILY SSF89550 6 249 1.59E-9 T 31-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 SUPERFAMILY SSF160975 838 894 1.7E-5 T 31-10-2018 BRM88_10235 b0d89761058cd733e6dd0243d6f61d55 1196 Pfam PF01336 OB-fold nucleic acid binding domain 1030 1098 2.9E-8 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 Pfam PF00082 Subtilase family 190 326 8.2E-17 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 SUPERFAMILY SSF52743 169 432 1.57E-57 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 Gene3D G3DSA:3.40.50.200 161 436 6.3E-60 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 190 209 1.8E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 228 241 1.8E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 PRINTS PR00723 Subtilisin serine protease family (S8) signature 379 395 1.8E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 232 242 - T 31-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 195 206 - T 31-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BRM88_16030 000142e2cf29f17b32ebf32fcbd3bc3e 441 Pfam PF00082 Subtilase family 359 417 7.2E-10 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_17425 a36822baa2d0f2abd5e9dd978c0da76e 216 Gene3D G3DSA:3.40.30.10 40 215 2.2E-41 T 31-10-2018 BRM88_17425 a36822baa2d0f2abd5e9dd978c0da76e 216 Pfam PF02630 SCO1/SenC 52 190 3.9E-21 T 31-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_17425 a36822baa2d0f2abd5e9dd978c0da76e 216 SUPERFAMILY SSF52833 47 211 5.6E-40 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_01360 8ecc029472c9371308bbc3ef0d66ed77 350 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 160 169 - T 31-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BRM88_01360 8ecc029472c9371308bbc3ef0d66ed77 350 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 62 314 1.2E-50 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BRM88_01360 8ecc029472c9371308bbc3ef0d66ed77 350 SUPERFAMILY SSF51445 36 340 1.33E-76 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_01360 8ecc029472c9371308bbc3ef0d66ed77 350 Gene3D G3DSA:3.20.20.80 35 350 6.8E-100 T 31-10-2018 BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 SUPERFAMILY SSF53474 4 298 3.37E-61 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 Pfam PF00561 alpha/beta hydrolase fold 33 282 8.7E-23 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 Gene3D G3DSA:3.40.50.1820 3 298 2.0E-63 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 PRINTS PR00412 Epoxide hydrolase signature 110 123 7.0E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 PRINTS PR00412 Epoxide hydrolase signature 272 294 7.0E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_22480 6f9b58f8801d200a8ccddbca3463d6f6 300 PRINTS PR00412 Epoxide hydrolase signature 38 56 7.0E-5 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_05080 6cb3eac711c1055a2fdc45b48b4129a5 153 Gene3D G3DSA:1.10.10.2520 17 96 2.8E-14 T 31-10-2018 BRM88_05080 6cb3eac711c1055a2fdc45b48b4129a5 153 Pfam PF07486 Cell Wall Hydrolase 35 142 1.0E-17 T 31-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 Pfam PF13602 Zinc-binding dehydrogenase 69 203 2.4E-15 T 31-10-2018 BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 Gene3D G3DSA:1.20.120.20 393 535 5.1E-5 T 31-10-2018 BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 Gene3D G3DSA:3.90.180.10 1 203 4.9E-46 T 31-10-2018 BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 SUPERFAMILY SSF51735 1 163 8.14E-27 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 1 203 3.5E-92 T 31-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 Pfam PF02646 RmuC family 474 762 1.4E-74 T 31-10-2018 IPR003798 DNA recombination RmuC BRM88_24310 7dc20ce89c4c4ac87ad1634eae06cb69 774 Gene3D G3DSA:3.40.50.720 4 148 4.9E-46 T 31-10-2018 BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 289 320 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 662 693 2.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 866 897 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 1004 1028 0.048 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 594 625 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 492 523 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 460 489 1.9E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 390 421 9.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 323 353 4.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 424 455 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 764 795 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 526 557 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 798 829 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 900 931 5.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 832 863 8.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 560 591 3.6E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 696 727 3.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 730 761 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 628 659 2.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 968 997 4.3E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 356 387 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11780 6e748eb21c8e07acb06c528be437cda4 1284 Pfam PF03377 TAL effector repeat 934 965 4.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 SUPERFAMILY SSF53901 3 267 2.78E-78 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 Gene3D G3DSA:3.40.47.10 126 388 1.4E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 Pfam PF02803 Thiolase, C-terminal domain 269 389 3.1E-43 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 SUPERFAMILY SSF53901 269 390 4.99E-40 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 5.9E-125 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 2.2E-86 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 PIRSF PIRSF000429 1 391 9.2E-114 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 Gene3D G3DSA:3.40.47.10 5 274 1.4E-141 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 31-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BRM88_09810 0b5b47ac2fc80492a5ad3913fde81fab 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 31-10-2018 IPR020610 Thiolase, active site GO:0016747 BRM88_23760 15d656d11d636ea3722098f6d96593ab 96 Pfam PF01381 Helix-turn-helix 14 67 1.2E-12 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_23760 15d656d11d636ea3722098f6d96593ab 96 Gene3D G3DSA:1.10.260.40 3 94 2.1E-32 T 31-10-2018 BRM88_23760 15d656d11d636ea3722098f6d96593ab 96 SMART SM00530 13 68 1.1E-10 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_23760 15d656d11d636ea3722098f6d96593ab 96 SUPERFAMILY SSF47413 8 88 9.01E-27 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_23760 15d656d11d636ea3722098f6d96593ab 96 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 82 3.8E-32 T 31-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 Gene3D G3DSA:3.40.50.300 303 577 1.1E-104 T 31-10-2018 BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 Pfam PF00437 Type II/IV secretion system protein 201 468 2.2E-88 T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 Gene3D G3DSA:3.30.300.160 69 149 2.1E-8 T 31-10-2018 BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 49 151 2.9E-19 T 31-10-2018 IPR007831 General secretory system II, protein E, N-terminal BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 SUPERFAMILY SSF52540 190 575 1.68E-99 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 Gene3D G3DSA:3.30.450.90 170 301 6.6E-48 T 31-10-2018 BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 15 577 1.8E-270 T 31-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 396 410 - T 31-10-2018 IPR001482 Type II/IV secretion system protein BRM88_08205 f2175e73bbb16c5ec7993b381adabf24 577 SUPERFAMILY SSF160246 10 148 1.15E-33 T 31-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF56042 875 1091 9.42E-49 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Pfam PF02769 AIR synthase related protein, C-terminal domain 421 578 2.3E-30 T 31-10-2018 IPR010918 PurM-like, C-terminal domain BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Pfam PF02769 AIR synthase related protein, C-terminal domain 880 1024 5.8E-10 T 31-10-2018 IPR010918 PurM-like, C-terminal domain BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:3.30.1330.10 648 829 1.8E-22 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF52317 1095 1349 1.58E-91 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1350 20.47 T 31-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF109736 157 212 2.09E-18 T 31-10-2018 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 812 0.0 T 31-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF55326 213 415 1.53E-51 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1098 1349 9.6E-100 T 31-10-2018 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:3.40.50.880 1041 1350 3.2E-123 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SMART SM01211 1098 1349 9.3E-146 T 31-10-2018 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF55326 645 866 8.89E-58 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF56042 421 680 4.93E-49 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:3.30.1330.10 206 411 5.5E-40 T 31-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:1.10.8.750 143 205 4.7E-20 T 31-10-2018 BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:3.90.650.10 412 585 1.2E-50 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 Gene3D G3DSA:3.90.650.10 863 1040 2.2E-30 T 31-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BRM88_04220 f34678647294a9cc46b5188020eafff5 1350 SUPERFAMILY SSF82697 1 148 2.14E-32 T 31-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BRM88_21285 42fdec0e997ce484406ac67717d375db 305 SUPERFAMILY SSF56349 5 291 2.3E-55 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_21285 42fdec0e997ce484406ac67717d375db 305 Gene3D G3DSA:1.10.443.10 118 292 3.7E-57 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_21285 42fdec0e997ce484406ac67717d375db 305 Gene3D G3DSA:1.10.150.130 1 106 6.7E-22 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_21285 42fdec0e997ce484406ac67717d375db 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 4 96 5.5E-18 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BRM88_21285 42fdec0e997ce484406ac67717d375db 305 Pfam PF00589 Phage integrase family 119 284 1.3E-46 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BRM88_21285 42fdec0e997ce484406ac67717d375db 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 2 298 58.966 T 31-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BRM88_21285 42fdec0e997ce484406ac67717d375db 305 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 6 300 6.2E-110 T 31-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 Hamap MF_00528 Septum formation protein Maf [maf]. 4 190 28.461 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 PIRSF PIRSF006305 1 190 1.5E-41 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 1.8E-46 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 SUPERFAMILY SSF52972 1 185 3.01E-53 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 Gene3D G3DSA:3.90.950.10 3 190 1.4E-55 T 31-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BRM88_04420 a25d61d414faf6d56f85f41a7fc1eed1 191 Pfam PF02545 Maf-like protein 4 185 6.0E-42 T 31-10-2018 IPR003697 Maf-like protein GO:0047429 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 SUPERFAMILY SSF46785 1 118 2.18E-20 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 SUPERFAMILY SSF53850 99 299 7.12E-39 T 31-10-2018 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 Gene3D G3DSA:3.40.190.290 98 303 7.1E-40 T 31-10-2018 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.0E-14 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 Pfam PF03466 LysR substrate binding domain 98 299 7.0E-42 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.4E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.4E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.4E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_11470 844d00de3fa2de0e0d41ee963d2f55cd 307 Gene3D G3DSA:1.10.10.10 1 85 2.0E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 Gene3D G3DSA:3.30.1850.10 13 132 6.1E-41 T 31-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 Gene3D G3DSA:3.40.50.450 133 459 5.5E-107 T 31-10-2018 BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 Pfam PF11892 Domain of unknown function (DUF3412) 342 459 5.5E-52 T 31-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 SUPERFAMILY SSF102405 130 337 7.63E-39 T 31-10-2018 BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 Pfam PF14793 Domain of unknown function (DUF4478) 17 122 5.2E-39 T 31-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BRM88_17120 f7761dc24689158283eac5ef76deabfc 461 Pfam PF03641 Possible lysine decarboxylase 198 337 1.8E-28 T 31-10-2018 IPR031100 LOG family BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 SUPERFAMILY SSF53850 2 216 4.66E-82 T 31-10-2018 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Gene3D G3DSA:3.30.160.40 220 304 1.1E-23 T 31-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 37.233 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 SUPERFAMILY SSF54782 221 302 2.35E-22 T 31-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Gene3D G3DSA:3.40.190.10 101 200 5.6E-81 T 31-10-2018 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Gene3D G3DSA:3.40.190.10 4 208 5.6E-81 T 31-10-2018 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 293 3.0E-13 T 31-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PIRSF PIRSF001438 1 304 3.1E-112 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 294 5.3E-101 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 8.6E-42 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 8.6E-42 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 8.6E-42 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 8.6E-42 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 8.6E-42 T 31-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 4.0E-75 T 31-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21355 df195ff3e06cee75815f13c1760b0ba0 304 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 31-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 447 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 3.4E-12 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 449 1.8E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 SMART SM00387 342 450 4.7E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 SUPERFAMILY SSF55874 294 450 5.63E-34 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 SUPERFAMILY SSF47384 229 299 7.65E-7 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 Gene3D G3DSA:3.30.565.10 304 455 9.5E-33 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 SMART SM00388 234 301 0.0073 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_03400 30f04dcbfbed07c2e003c040ab9abcc0 457 Gene3D G3DSA:1.10.287.130 198 295 9.8E-15 T 31-10-2018 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 326 345 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 354 371 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 117 143 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 170 191 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 145 164 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 386 405 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 PRINTS PR00447 Natural resistance-associated macrophage protein signature 222 245 1.4E-60 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 29 442 39.592 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 38 410 3.7E-120 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_11495 ce5b3c2163cc05322cde793756ee4c9e 444 Pfam PF01566 Natural resistance-associated macrophage protein 58 414 1.2E-130 T 31-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 SUPERFAMILY SSF47384 263 328 4.71E-9 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 1.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 1.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 439 1.0E-8 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 SMART SM00388 268 334 1.6E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 SUPERFAMILY SSF55874 362 476 3.29E-26 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 Gene3D G3DSA:1.10.287.130 244 329 2.1E-11 T 31-10-2018 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 SMART SM00387 374 479 8.8E-23 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 Pfam PF00512 His Kinase A (phospho-acceptor) domain 268 326 1.4E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 Gene3D G3DSA:3.30.565.10 359 478 1.1E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_22420 67762b2cb81f0f8755856d1e2d78e7c7 480 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 476 3.3E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_01115 2df778e5d2c2c0cb7ef33b8da338128b 319 Gene3D G3DSA:3.40.50.1100 55 151 1.1E-96 T 31-10-2018 BRM88_01115 2df778e5d2c2c0cb7ef33b8da338128b 319 Gene3D G3DSA:3.40.50.1100 17 310 1.1E-96 T 31-10-2018 BRM88_01115 2df778e5d2c2c0cb7ef33b8da338128b 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 20 306 6.3E-68 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_01115 2df778e5d2c2c0cb7ef33b8da338128b 319 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 31-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BRM88_01115 2df778e5d2c2c0cb7ef33b8da338128b 319 SUPERFAMILY SSF53686 9 315 1.83E-78 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_06590 c2c594e03a5924c66db603875a785268 182 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 3 161 23.455 T 31-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BRM88_06590 c2c594e03a5924c66db603875a785268 182 Gene3D G3DSA:2.60.450.10 24 164 1.9E-34 T 31-10-2018 BRM88_06590 c2c594e03a5924c66db603875a785268 182 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 22 161 1.5E-40 T 31-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BRM88_06590 c2c594e03a5924c66db603875a785268 182 Pfam PF03968 OstA-like protein 34 143 1.3E-25 T 31-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Gene3D G3DSA:3.40.50.1820 452 704 1.9E-61 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Gene3D G3DSA:2.120.10.30 188 451 4.0E-16 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 SUPERFAMILY SSF53474 449 704 2.7E-69 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 SUPERFAMILY SSF82171 34 440 4.32E-37 T 31-10-2018 BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Pfam PF07676 WD40-like Beta Propeller Repeat 299 318 0.063 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Pfam PF07676 WD40-like Beta Propeller Repeat 83 114 8.5E-6 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Gene3D G3DSA:2.120.10.30 19 165 9.0E-26 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_18270 e44062afc145dd975fc9b15499f69c49 706 Pfam PF00326 Prolyl oligopeptidase family 496 705 3.0E-59 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_08455 393675974449da2833a800fd1eb420c8 565 Gene3D G3DSA:1.10.390.60 161 425 3.7E-60 T 31-10-2018 BRM88_08455 393675974449da2833a800fd1eb420c8 565 SUPERFAMILY SSF50156 446 537 6.12E-9 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_08455 393675974449da2833a800fd1eb420c8 565 Pfam PF05299 M61 glycyl aminopeptidase 241 358 8.2E-34 T 31-10-2018 IPR007963 Peptidase M61, catalytic domain BRM88_08455 393675974449da2833a800fd1eb420c8 565 PIRSF PIRSF016493 1 565 9.0E-141 T 31-10-2018 IPR024191 Peptidase M61 BRM88_08455 393675974449da2833a800fd1eb420c8 565 Gene3D G3DSA:2.60.40.3650 1 148 2.2E-5 T 31-10-2018 BRM88_08455 393675974449da2833a800fd1eb420c8 565 SMART SM00228 463 530 0.0085 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_08455 393675974449da2833a800fd1eb420c8 565 Gene3D G3DSA:2.30.42.10 470 541 1.5E-6 T 31-10-2018 BRM88_08455 393675974449da2833a800fd1eb420c8 565 Pfam PF07720 Tetratricopeptide repeat 177 211 2.3E-9 T 31-10-2018 IPR011716 Tetratricopeptide TPR-3 BRM88_09710 fc88477b28bca0d85edd59bbdcf39dd3 458 Pfam PF05598 Transposase domain (DUF772) 59 133 2.4E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_09710 fc88477b28bca0d85edd59bbdcf39dd3 458 Pfam PF01609 Transposase DDE domain 284 421 3.8E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 12 475 17.804 T 31-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 15 472 2.6E-138 T 31-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 Pfam PF00361 Proton-conducting membrane transporter 130 423 7.5E-75 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 312 324 2.5E-7 T 31-10-2018 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 2.5E-7 T 31-10-2018 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 78 103 2.5E-7 T 31-10-2018 BRM88_17220 359dbc2f9c592f206b95e60cbea45edb 486 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 2.5E-7 T 31-10-2018 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 PIRSF PIRSF005261 1 286 1.5E-98 T 31-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 Gene3D G3DSA:1.10.287.480 179 226 1.3E-10 T 31-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 Gene3D G3DSA:3.90.1280.10 227 285 7.0E-19 T 31-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 SUPERFAMILY SSF118352 226 282 3.4E-17 T 31-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 Pfam PF01430 Hsp33 protein 5 273 8.0E-77 T 31-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 SUPERFAMILY SSF64397 4 233 1.44E-58 T 31-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BRM88_09460 074836c8e0beb081411bdb4ac80eb36b 296 Gene3D G3DSA:3.55.30.10 1 177 4.5E-49 T 31-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BRM88_21790 4e147c0e51f7491e67183bb4534c58c1 421 SUPERFAMILY SSF48452 273 383 2.06E-5 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_21790 4e147c0e51f7491e67183bb4534c58c1 421 Pfam PF07219 HemY protein N-terminus 33 132 9.6E-18 T 31-10-2018 IPR010817 HemY, N-terminal BRM88_21790 4e147c0e51f7491e67183bb4534c58c1 421 Gene3D G3DSA:1.25.40.10 298 398 3.1E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_21790 4e147c0e51f7491e67183bb4534c58c1 421 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 6 379 1.4E-47 T 31-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 BRM88_19730 af96264283670da5a943121e21ccc713 365 Pfam PF00691 OmpA family 255 346 4.8E-23 T 31-10-2018 IPR006665 OmpA-like domain BRM88_19730 af96264283670da5a943121e21ccc713 365 Gene3D G3DSA:2.40.160.20 18 191 4.9E-25 T 31-10-2018 BRM88_19730 af96264283670da5a943121e21ccc713 365 Pfam PF13505 Outer membrane protein beta-barrel domain 8 187 6.4E-19 T 31-10-2018 IPR027385 Outer membrane protein beta-barrel BRM88_19730 af96264283670da5a943121e21ccc713 365 SUPERFAMILY SSF103647 210 245 4.71E-5 T 31-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 BRM88_19730 af96264283670da5a943121e21ccc713 365 SUPERFAMILY SSF103088 253 363 2.22E-35 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_19730 af96264283670da5a943121e21ccc713 365 Gene3D G3DSA:3.30.1330.60 245 365 6.1E-39 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_19730 af96264283670da5a943121e21ccc713 365 SUPERFAMILY SSF56925 27 188 4.19E-17 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BRM88_19730 af96264283670da5a943121e21ccc713 365 PRINTS PR01021 OMPA domain signature 256 278 7.6E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_19730 af96264283670da5a943121e21ccc713 365 PRINTS PR01021 OMPA domain signature 301 317 7.6E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_19730 af96264283670da5a943121e21ccc713 365 PRINTS PR01021 OMPA domain signature 286 301 7.6E-18 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 PRINTS PR01374 Gram-negative bacterial tonB protein signature 301 318 7.2E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 PRINTS PR01374 Gram-negative bacterial tonB protein signature 282 300 7.2E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 PRINTS PR01374 Gram-negative bacterial tonB protein signature 261 282 7.2E-8 T 31-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 SUPERFAMILY SSF74653 259 324 1.44E-18 T 31-10-2018 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 Gene3D G3DSA:3.30.1150.10 244 337 1.1E-20 T 31-10-2018 BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 267 338 3.6E-16 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_01880 0c90eff9a77b1556750f8f71cc3e8043 340 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 265 336 1.8E-16 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_21605 d7298507750b7934b6658a204872d6db 309 SUPERFAMILY SSF111331 3 305 7.85E-67 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BRM88_21605 d7298507750b7934b6658a204872d6db 309 Gene3D G3DSA:2.60.200.40 127 293 2.5E-76 T 31-10-2018 BRM88_21605 d7298507750b7934b6658a204872d6db 309 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 5 308 44.589 T 31-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 BRM88_21605 d7298507750b7934b6658a204872d6db 309 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 5 307 1.1E-140 T 31-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 BRM88_21605 d7298507750b7934b6658a204872d6db 309 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 6 301 4.7E-62 T 31-10-2018 IPR005218 Diacylglycerol/lipid kinase BRM88_21605 d7298507750b7934b6658a204872d6db 309 SMART SM00046 5 130 2.9E-17 T 31-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BRM88_21605 d7298507750b7934b6658a204872d6db 309 Gene3D G3DSA:3.40.50.10330 24 296 2.5E-76 T 31-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BRM88_21605 d7298507750b7934b6658a204872d6db 309 Pfam PF00781 Diacylglycerol kinase catalytic domain 6 129 9.7E-27 T 31-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BRM88_09895 f63ba24ea603a027de4faaae586993e9 157 SUPERFAMILY SSF54534 3 140 5.3E-35 T 31-10-2018 BRM88_09895 f63ba24ea603a027de4faaae586993e9 157 Gene3D G3DSA:3.10.50.40 3 153 2.0E-53 T 31-10-2018 BRM88_09895 f63ba24ea603a027de4faaae586993e9 157 Gene3D G3DSA:2.40.10.330 71 121 2.0E-53 T 31-10-2018 BRM88_09895 f63ba24ea603a027de4faaae586993e9 157 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 2.7E-10 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 7 25 4.1E-48 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 4.1E-48 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 54 78 4.1E-48 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 25 46 4.1E-48 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 4.1E-48 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 8 160 7.5E-58 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 64 3.2E-16 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 Pfam PF01467 Cytidylyltransferase-like 10 138 6.5E-22 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 Gene3D G3DSA:3.40.50.620 1 164 1.6E-55 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 7 163 35.964 T 31-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BRM88_13220 9666500eebc10094f2e081ee76b7f88d 168 SUPERFAMILY SSF52374 7 160 6.7E-45 T 31-10-2018 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PIRSF PIRSF002560 18 174 4.1E-58 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 61 81 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 102 122 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 145 166 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 20 39 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 123 143 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 PRINTS PR00601 Bacterioferritin signature 40 60 9.2E-37 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 Pfam PF00210 Ferritin-like domain 26 161 2.2E-34 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 TIGRFAM TIGR00754 bfr: bacterioferritin 18 171 3.0E-39 T 31-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 Gene3D G3DSA:1.20.1260.10 18 171 1.0E-55 T 31-10-2018 IPR012347 Ferritin-like BRM88_10410 fba778aad3fb3a4c665baef831509b3a 178 SUPERFAMILY SSF47240 18 173 6.0E-43 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_02420 99c183f7152fa376d1fcc7d7fda32987 187 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 39 67 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 BRM88_02420 99c183f7152fa376d1fcc7d7fda32987 187 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 6 187 2.9E-69 T 31-10-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 BRM88_02420 99c183f7152fa376d1fcc7d7fda32987 187 SUPERFAMILY SSF49482 3 186 7.59E-52 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 BRM88_02420 99c183f7152fa376d1fcc7d7fda32987 187 Gene3D G3DSA:2.60.130.10 1 186 6.2E-61 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 BRM88_02420 99c183f7152fa376d1fcc7d7fda32987 187 Pfam PF00775 Dioxygenase 30 144 2.3E-17 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 BRM88_03030 7d49fc442c14225aa9075867f9d4d062 167 SUPERFAMILY SSF103473 12 82 1.7E-5 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_03030 7d49fc442c14225aa9075867f9d4d062 167 Pfam PF03703 Bacterial PH domain 80 156 1.2E-14 T 31-10-2018 IPR005182 Domain of unknown function DUF304 BRM88_17110 205472e5fddb2b6f014d2ed6fe7395e6 157 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 13 135 1.4E-28 T 31-10-2018 IPR013362 Pilus modification type IV, PilV BRM88_17110 205472e5fddb2b6f014d2ed6fe7395e6 157 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 32 2.1E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17110 205472e5fddb2b6f014d2ed6fe7395e6 157 Pfam PF07963 Prokaryotic N-terminal methylation motif 13 33 1.7E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_03175 bb0ac18859b7a31c58aa30255ddc2ac8 885 Pfam PF05650 Domain of unknown function (DUF802) 321 365 2.2E-7 T 31-10-2018 IPR008520 Domain of unknown function DUF802 BRM88_03175 bb0ac18859b7a31c58aa30255ddc2ac8 885 Pfam PF05650 Domain of unknown function (DUF802) 562 614 3.9E-11 T 31-10-2018 IPR008520 Domain of unknown function DUF802 BRM88_03175 bb0ac18859b7a31c58aa30255ddc2ac8 885 Pfam PF05650 Domain of unknown function (DUF802) 509 559 6.1E-16 T 31-10-2018 IPR008520 Domain of unknown function DUF802 BRM88_03175 bb0ac18859b7a31c58aa30255ddc2ac8 885 Pfam PF05650 Domain of unknown function (DUF802) 383 427 7.7E-8 T 31-10-2018 IPR008520 Domain of unknown function DUF802 BRM88_19700 694fd2005cd7d82f90182b3766d23447 286 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 17 279 1.2E-125 T 31-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 BRM88_19700 694fd2005cd7d82f90182b3766d23447 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 278 9.1E-25 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_19700 694fd2005cd7d82f90182b3766d23447 286 SUPERFAMILY SSF161098 24 274 4.32E-55 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_19700 694fd2005cd7d82f90182b3766d23447 286 Gene3D G3DSA:1.10.3720.10 23 283 1.5E-68 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_19700 694fd2005cd7d82f90182b3766d23447 286 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 277 1.8E-97 T 31-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 Gene3D G3DSA:1.10.260.40 6 67 7.8E-21 T 31-10-2018 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 SUPERFAMILY SSF47413 14 72 9.38E-17 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 Gene3D G3DSA:3.40.50.2300 68 320 6.2E-68 T 31-10-2018 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 SUPERFAMILY SSF53822 75 349 3.3E-67 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 SMART SM00354 14 84 9.0E-27 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 Gene3D G3DSA:3.40.50.2300 174 303 6.2E-68 T 31-10-2018 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 61 6.3E-19 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 Pfam PF13377 Periplasmic binding protein-like domain 182 345 2.4E-38 T 31-10-2018 BRM88_23485 287ec84f823cc09f4b26b401376efd10 355 ProSitePatterns PS00356 LacI-type HTH domain signature. 17 35 - T 31-10-2018 BRM88_15935 596016efb35b1dc9f4548d016d29d63e 376 Pfam PF13439 Glycosyltransferase Family 4 30 140 7.5E-7 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BRM88_15935 596016efb35b1dc9f4548d016d29d63e 376 Pfam PF00534 Glycosyl transferases group 1 183 343 3.4E-16 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_15935 596016efb35b1dc9f4548d016d29d63e 376 SUPERFAMILY SSF53756 29 366 3.32E-44 T 31-10-2018 BRM88_15935 596016efb35b1dc9f4548d016d29d63e 376 Gene3D G3DSA:3.40.50.2000 172 351 3.0E-37 T 31-10-2018 BRM88_15935 596016efb35b1dc9f4548d016d29d63e 376 Gene3D G3DSA:3.40.50.2000 30 364 3.0E-37 T 31-10-2018 BRM88_04400 ded9ec89025191b53b57c9ed0cefe5d3 224 PIRSF PIRSF029950 1 224 7.6E-95 T 31-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 BRM88_04400 ded9ec89025191b53b57c9ed0cefe5d3 224 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 5 46 9.3E-16 T 31-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal BRM88_04400 ded9ec89025191b53b57c9ed0cefe5d3 224 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 5 214 1.0E-44 T 31-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 BRM88_04400 ded9ec89025191b53b57c9ed0cefe5d3 224 TIGRFAM TIGR01876 cas_Cas5d: CRISPR-associated protein Cas5, subtype I-C/DVULG 7 222 4.0E-52 T 31-10-2018 IPR010155 CRISPR pre-crRNA endoribonuclease Cas5d GO:0004519|GO:0051607 BRM88_04400 ded9ec89025191b53b57c9ed0cefe5d3 224 Gene3D G3DSA:3.30.70.2660 1 224 1.6E-105 T 31-10-2018 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 339 58.259 T 31-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 Gene3D G3DSA:3.90.180.10 21 327 1.2E-110 T 31-10-2018 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 SUPERFAMILY SSF50129 1 173 4.72E-57 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 135 4.2E-34 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 SUPERFAMILY SSF51735 141 304 3.23E-34 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 SMART SM00829 8 337 3.7E-4 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 339 4.8E-147 T 31-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 Pfam PF00107 Zinc-binding dehydrogenase 174 301 7.1E-29 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BRM88_19680 095e29c517d43e428b906cd2d42c2516 340 Gene3D G3DSA:3.40.50.720 153 285 1.2E-110 T 31-10-2018 BRM88_06025 24f08f9d0c361c61808bd28c3c696239 215 Pfam PF12261 Thermostable hemolysin 14 185 3.2E-57 T 31-10-2018 IPR022050 Thermostable hemolysin BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 PRINTS PR00618 DksA/TraR zinc finger signature 51 63 9.8E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 PRINTS PR00618 DksA/TraR zinc finger signature 39 50 9.8E-5 T 31-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 Gene3D G3DSA:1.20.120.910 1 73 5.3E-24 T 31-10-2018 BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 35 65 5.5E-12 T 31-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 39 63 - T 31-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 SUPERFAMILY SSF57716 38 72 3.71E-8 T 31-10-2018 BRM88_09850 cd655770b2bc62dbc7d94ab2a44b7885 88 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 12 66 2.1E-17 T 31-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 242 320 1.2E-13 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 SUPERFAMILY SSF52096 165 555 9.11E-68 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 Gene3D G3DSA:3.90.226.10 328 570 6.5E-59 T 31-10-2018 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 Gene3D G3DSA:2.30.42.10 237 322 4.3E-14 T 31-10-2018 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 SUPERFAMILY SSF50156 230 342 8.1E-14 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 Pfam PF03572 Peptidase family S41 366 548 1.4E-51 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 SMART SM00245 330 550 9.0E-50 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 553 702 5.9E-39 T 31-10-2018 IPR020992 Tail specific protease, C-terminal BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 SMART SM00228 247 325 1.8E-10 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_21065 7e6f808ed83e70aee1ce7b34971ad3e4 727 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 207 569 2.1E-90 T 31-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BRM88_23430 c60886e85dfd33d5738b25cc52d6f761 300 Pfam PF04366 Las17-binding protein actin regulator 100 211 1.5E-28 T 31-10-2018 IPR007461 Ysc84 actin-binding domain BRM88_13410 fba9e2f406cf7a3fb1cb4e3000dc1fdf 642 SUPERFAMILY SSF54001 264 345 1.14E-8 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_13410 fba9e2f406cf7a3fb1cb4e3000dc1fdf 642 Gene3D G3DSA:2.60.40.3140 37 244 3.8E-41 T 31-10-2018 BRM88_13410 fba9e2f406cf7a3fb1cb4e3000dc1fdf 642 Pfam PF01841 Transglutaminase-like superfamily 269 342 8.3E-8 T 31-10-2018 IPR002931 Transglutaminase-like BRM88_13410 fba9e2f406cf7a3fb1cb4e3000dc1fdf 642 Gene3D G3DSA:3.10.620.30 255 393 9.1E-32 T 31-10-2018 BRM88_13410 fba9e2f406cf7a3fb1cb4e3000dc1fdf 642 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 54 222 4.5E-34 T 31-10-2018 IPR024618 Domain of unknown function DUF3857 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Gene3D G3DSA:3.40.50.12160 16 132 1.7E-29 T 31-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 16 446 1.1E-97 T 31-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 150 170 - T 31-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 15 448 59.864 T 31-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Gene3D G3DSA:3.80.30.20 144 385 3.1E-69 T 31-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Gene3D G3DSA:2.40.50.140 386 452 1.2E-16 T 31-10-2018 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 SMART SM00729 146 371 5.2E-50 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 SUPERFAMILY SSF102114 125 377 1.05E-50 T 31-10-2018 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Pfam PF00919 Uncharacterized protein family UPF0004 16 108 4.9E-20 T 31-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 16 446 2.1E-171 T 31-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 BRM88_17480 48c8d1ecc2b7a6719c45a7a40e6b8d40 466 Pfam PF04055 Radical SAM superfamily 152 329 2.7E-28 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 419 9.2E-43 T 31-10-2018 IPR000160 GGDEF domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 261 422 5.8E-38 T 31-10-2018 IPR000160 GGDEF domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Pfam PF00563 EAL domain 440 674 2.7E-75 T 31-10-2018 IPR001633 EAL domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 240 3.2E-8 T 31-10-2018 IPR005330 MHYT domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Pfam PF03707 Bacterial signalling protein N terminal repeat 114 167 1.9E-10 T 31-10-2018 IPR005330 MHYT domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Pfam PF03707 Bacterial signalling protein N terminal repeat 51 106 6.9E-21 T 31-10-2018 IPR005330 MHYT domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 SMART SM00052 433 679 7.7E-116 T 31-10-2018 IPR001633 EAL domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 SMART SM00267 252 423 4.7E-53 T 31-10-2018 IPR000160 GGDEF domain BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Gene3D G3DSA:3.20.20.450 437 687 6.0E-103 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 SUPERFAMILY SSF55073 268 424 2.98E-46 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 Gene3D G3DSA:3.30.70.270 258 436 2.7E-53 T 31-10-2018 BRM88_13770 0bbcfece42f0a18fae822f9f51fa67df 696 SUPERFAMILY SSF141868 439 685 1.44E-90 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 74 226 1.8E-45 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 SUPERFAMILY SSF55120 67 230 3.84E-35 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 Gene3D G3DSA:3.30.70.580 71 229 4.8E-50 T 31-10-2018 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 SUPERFAMILY SSF55174 4 58 3.36E-12 T 31-10-2018 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 SMART SM00363 3 62 1.3E-8 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 Gene3D G3DSA:3.30.70.1560 135 208 4.8E-50 T 31-10-2018 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 Gene3D G3DSA:3.10.290.10 1 59 5.8E-19 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 Pfam PF00849 RNA pseudouridylate synthase 70 149 5.5E-13 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_08015 2ae0c5a26f44cceb80288c5f9e12249b 240 Pfam PF01479 S4 domain 4 48 1.1E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 PIRSF PIRSF006250 14 291 5.6E-81 T 31-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 120 288 4.2E-51 T 31-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 22 288 1.7E-81 T 31-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 Gene3D G3DSA:3.20.20.70 128 279 7.4E-98 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 SUPERFAMILY SSF51690 120 289 5.89E-52 T 31-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 30 117 1.6E-20 T 31-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 Gene3D G3DSA:3.90.1170.20 17 288 7.4E-98 T 31-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 BRM88_17170 a71d7d9c3d57a736e6f511e7bb47c2e5 295 SUPERFAMILY SSF54675 12 117 1.26E-26 T 31-10-2018 BRM88_18820 b6a39ca8b51883282e259500f172b727 224 SMART SM00478 55 210 1.6E-10 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_18820 b6a39ca8b51883282e259500f172b727 224 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 193 9.9E-12 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_18820 b6a39ca8b51883282e259500f172b727 224 SUPERFAMILY SSF48150 38 208 6.11E-36 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BRM88_18820 b6a39ca8b51883282e259500f172b727 224 Gene3D G3DSA:1.10.340.30 43 157 3.0E-59 T 31-10-2018 BRM88_18820 b6a39ca8b51883282e259500f172b727 224 Gene3D G3DSA:1.10.1670.40 15 207 3.0E-59 T 31-10-2018 BRM88_06270 ef6bfade378815b2b3406780e12996c2 223 Pfam PF00665 Integrase core domain 122 208 1.0E-18 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_06270 ef6bfade378815b2b3406780e12996c2 223 Gene3D G3DSA:3.30.420.10 115 218 2.3E-10 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_06270 ef6bfade378815b2b3406780e12996c2 223 SUPERFAMILY SSF53098 114 207 9.56E-23 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_06270 ef6bfade378815b2b3406780e12996c2 223 Pfam PF13276 HTH-like domain 41 96 2.9E-16 T 31-10-2018 IPR025948 HTH-like domain BRM88_18530 e698a9cec8a05624f3444b3719305b40 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_18530 e698a9cec8a05624f3444b3719305b40 318 SUPERFAMILY SSF53098 163 308 2.43E-22 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_18530 e698a9cec8a05624f3444b3719305b40 318 Gene3D G3DSA:3.30.420.10 156 316 1.4E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_18530 e698a9cec8a05624f3444b3719305b40 318 Pfam PF00665 Integrase core domain 173 266 1.2E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_11140 5a883137da84089076b36a2edc3dfb8a 188 SUPERFAMILY SSF51182 1 180 3.33E-37 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_11140 5a883137da84089076b36a2edc3dfb8a 188 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 37.462 T 31-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 BRM88_11140 5a883137da84089076b36a2edc3dfb8a 188 Gene3D G3DSA:2.60.120.10 2 157 1.2E-50 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_11140 5a883137da84089076b36a2edc3dfb8a 188 Pfam PF03079 ARD/ARD' family 4 164 8.8E-32 T 31-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BRM88_07320 6f7075ac4a2d93269f6eeb237061b8c1 188 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 6 188 37.67 T 31-10-2018 IPR003774 Protein of unknown function UPF0301 BRM88_07320 6f7075ac4a2d93269f6eeb237061b8c1 188 SUPERFAMILY SSF143456 6 188 8.76E-63 T 31-10-2018 BRM88_07320 6f7075ac4a2d93269f6eeb237061b8c1 188 Pfam PF02622 Uncharacterized ACR, COG1678 17 175 3.9E-48 T 31-10-2018 IPR003774 Protein of unknown function UPF0301 BRM88_07320 6f7075ac4a2d93269f6eeb237061b8c1 188 Gene3D G3DSA:3.40.1740.10 5 188 2.9E-64 T 31-10-2018 BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 SUPERFAMILY SSF49785 513 625 1.84E-13 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 SUPERFAMILY SSF51445 36 354 3.26E-84 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 SUPERFAMILY SSF49785 356 485 1.28E-14 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Gene3D G3DSA:2.60.120.260 496 640 1.7E-16 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Pfam PF00754 F5/8 type C domain 518 623 4.4E-10 T 31-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Pfam PF00754 F5/8 type C domain 367 472 1.2E-8 T 31-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Pfam PF01120 Alpha-L-fucosidase 39 351 1.0E-34 T 31-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Gene3D G3DSA:3.20.20.80 36 362 5.8E-115 T 31-10-2018 BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 Gene3D G3DSA:2.60.120.260 367 487 9.3E-27 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09580 76777664468ad14cb4049e5d7d3596d1 643 SMART SM00812 38 417 2.4E-12 T 31-10-2018 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_05930 3f74f8d830954806c4241c16e20d7bb2 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_05930 3f74f8d830954806c4241c16e20d7bb2 411 Pfam PF01610 Transposase 155 389 4.6E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_01565 3f74f8d830954806c4241c16e20d7bb2 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_01565 3f74f8d830954806c4241c16e20d7bb2 411 Pfam PF01610 Transposase 155 389 4.6E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Gene3D G3DSA:3.90.740.10 231 432 0.0 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 46 57 - T 31-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 8 879 23.335 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 9 879 0.0 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Pfam PF08264 Anticodon-binding domain of tRNA 718 840 5.2E-13 T 31-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Gene3D G3DSA:1.10.730.10 12 811 0.0 T 31-10-2018 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 SUPERFAMILY SSF50677 230 433 4.71E-49 T 31-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 189 202 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 505 523 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 542 564 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 157 173 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 219 238 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 575 585 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 PRINTS PR00985 Leucyl-tRNA synthetase signature 131 148 1.8E-45 T 31-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 SUPERFAMILY SSF47323 683 879 1.27E-32 T 31-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 225 421 1.9E-69 T 31-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Gene3D G3DSA:3.10.20.590 819 880 3.2E-22 T 31-10-2018 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 SUPERFAMILY SSF52374 6 684 2.09E-145 T 31-10-2018 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 637 675 3.1E-6 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 175 5.7E-27 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 435 590 1.4E-8 T 31-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Gene3D G3DSA:3.40.50.620 37 584 0.0 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_17740 4a64fa7383845b7d8471cae94f12d0c0 880 Gene3D G3DSA:3.10.330.110 585 647 0.0 T 31-10-2018 BRM88_08275 a02d17af641177d83c2bfb41ec0ae876 126 Pfam PF04134 Protein of unknown function, DUF393 22 106 9.4E-21 T 31-10-2018 IPR007263 Protein of unknown function DUF393 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 SUPERFAMILY SSF88723 20 174 8.1E-41 T 31-10-2018 IPR029060 PIN-like domain superfamily BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 SMART SM00279 187 222 3.4E-10 T 31-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 Gene3D G3DSA:1.10.150.20 188 267 2.9E-74 T 31-10-2018 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 Gene3D G3DSA:3.40.50.1010 21 298 2.9E-74 T 31-10-2018 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 185 279 2.4E-23 T 31-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 SMART SM00475 19 282 3.9E-73 T 31-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 SUPERFAMILY SSF47807 185 304 1.47E-23 T 31-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BRM88_19415 1254dba17aef51e14eb0860cae2c2cd4 328 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 21 182 9.5E-39 T 31-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BRM88_22440 2da2fffd52673e0ea6a8495bf9ab054a 407 Pfam PF07690 Major Facilitator Superfamily 26 241 1.8E-15 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_22440 2da2fffd52673e0ea6a8495bf9ab054a 407 Gene3D G3DSA:1.20.1250.20 14 188 2.0E-18 T 31-10-2018 BRM88_22440 2da2fffd52673e0ea6a8495bf9ab054a 407 Gene3D G3DSA:1.20.1250.20 212 394 1.4E-16 T 31-10-2018 BRM88_22440 2da2fffd52673e0ea6a8495bf9ab054a 407 SUPERFAMILY SSF103473 13 392 6.28E-38 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_11485 f55dc118496a7203a15469550800f1bb 630 Pfam PF00072 Response regulator receiver domain 90 153 1.7E-10 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_11485 f55dc118496a7203a15469550800f1bb 630 SUPERFAMILY SSF158472 573 620 2.88E-7 T 31-10-2018 BRM88_11485 f55dc118496a7203a15469550800f1bb 630 SUPERFAMILY SSF103190 387 463 1.84E-5 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BRM88_11485 f55dc118496a7203a15469550800f1bb 630 SUPERFAMILY SSF52172 90 159 6.69E-13 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_11485 f55dc118496a7203a15469550800f1bb 630 SMART SM00304 572 625 2.5E-5 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_11485 f55dc118496a7203a15469550800f1bb 630 Gene3D G3DSA:3.40.50.12740 84 193 5.4E-15 T 31-10-2018 BRM88_11485 f55dc118496a7203a15469550800f1bb 630 Gene3D G3DSA:1.20.1480.50 540 630 5.2E-15 T 31-10-2018 BRM88_11485 f55dc118496a7203a15469550800f1bb 630 Pfam PF17201 Cache 3/Cache 2 fusion domain 299 490 3.2E-25 T 31-10-2018 IPR033462 Cache 3/Cache 2 fusion domain BRM88_13530 ee552c2926ca788cd6889b265f58fc35 135 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 135 9.4E-44 T 31-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 BRM88_13530 ee552c2926ca788cd6889b265f58fc35 135 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BRM88_13530 ee552c2926ca788cd6889b265f58fc35 135 Pfam PF00460 Flagella basal body rod protein 7 36 7.6E-9 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_13530 ee552c2926ca788cd6889b265f58fc35 135 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 88 131 5.2E-10 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BRM88_15695 1d8b16f4a0d1dcebfcf07fbbeb13e175 558 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 12 446 4.4E-164 T 31-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 BRM88_15695 1d8b16f4a0d1dcebfcf07fbbeb13e175 558 SUPERFAMILY SSF56112 100 435 8.25E-29 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_15695 1d8b16f4a0d1dcebfcf07fbbeb13e175 558 Pfam PF03109 ABC1 family 118 236 8.4E-33 T 31-10-2018 IPR004147 UbiB domain BRM88_11280 5baa3cce7c09afc460681a44f05546da 106 Pfam PF01722 BolA-like protein 11 87 1.1E-27 T 31-10-2018 IPR002634 BolA protein BRM88_11280 5baa3cce7c09afc460681a44f05546da 106 SUPERFAMILY SSF82657 3 88 2.88E-25 T 31-10-2018 IPR036065 BolA-like superfamily BRM88_11280 5baa3cce7c09afc460681a44f05546da 106 Gene3D G3DSA:3.30.300.90 1 91 2.6E-29 T 31-10-2018 BRM88_11280 5baa3cce7c09afc460681a44f05546da 106 PIRSF PIRSF003113 1 100 3.0E-26 T 31-10-2018 IPR002634 BolA protein BRM88_24220 4110fc62c6262535a33aa24e28e6c415 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.613 T 31-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_24220 4110fc62c6262535a33aa24e28e6c415 78 Pfam PF00830 Ribosomal L28 family 3 62 3.7E-27 T 31-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24220 4110fc62c6262535a33aa24e28e6c415 78 Gene3D G3DSA:2.30.170.40 2 78 1.8E-34 T 31-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24220 4110fc62c6262535a33aa24e28e6c415 78 SUPERFAMILY SSF143800 2 77 4.32E-31 T 31-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24220 4110fc62c6262535a33aa24e28e6c415 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 2.1E-26 T 31-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19800 a100daf25eff543c4242ff58586143d9 78 Pfam PF09413 Putative prokaryotic signal transducing protein 1 66 5.6E-12 T 31-10-2018 IPR018551 Domain of unknown function DUF2007 BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 SMART SM00825 Beta-ketoacyl synthase 4 399 2.1E-7 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 SUPERFAMILY SSF53901 212 398 2.64E-47 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 Gene3D G3DSA:3.40.47.10 251 394 2.6E-43 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 156 172 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 Gene3D G3DSA:3.40.47.10 6 246 7.2E-29 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 73 239 7.1E-20 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 249 356 1.3E-27 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BRM88_02300 b3c12a56d69f123402cdd4bf04641b69 399 SUPERFAMILY SSF53901 1 241 3.84E-31 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_21050 aecef4404fe8f06077e2a927a2de6581 467 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 410 1.7E-67 T 31-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BRM88_21050 aecef4404fe8f06077e2a927a2de6581 467 PIRSF PIRSF005943 1 467 2.4E-196 T 31-10-2018 IPR016471 Nicotinamide phosphoribosyl transferase Reactome: R-HSA-1368108|Reactome: R-HSA-197264 BRM88_21050 aecef4404fe8f06077e2a927a2de6581 467 SUPERFAMILY SSF51690 171 464 1.06E-46 T 31-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BRM88_21050 aecef4404fe8f06077e2a927a2de6581 467 Gene3D G3DSA:3.20.20.70 137 389 1.1E-97 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 Gene3D G3DSA:3.20.20.70 1 251 1.1E-92 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 239 9.0E-66 T 31-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 SUPERFAMILY SSF51351 1 247 3.27E-87 T 31-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 247 60.664 T 31-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 164 174 - T 31-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_17300 dc1ae3155aef6e6ed8791148d6998a57 251 Pfam PF00121 Triosephosphate isomerase 4 244 1.3E-87 T 31-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_22935 7ea32584aa8ee6673ec4a2049501169e 249 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 64 192 3.8E-36 T 31-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 BRM88_22935 7ea32584aa8ee6673ec4a2049501169e 249 SMART SM00563 81 195 3.0E-39 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_22935 7ea32584aa8ee6673ec4a2049501169e 249 Pfam PF01553 Acyltransferase 67 192 7.1E-30 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_22935 7ea32584aa8ee6673ec4a2049501169e 249 SUPERFAMILY SSF69593 11 245 6.54E-57 T 31-10-2018 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 Pfam PF00072 Response regulator receiver domain 159 271 1.1E-18 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 SUPERFAMILY SSF55874 15 133 5.5E-36 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 SUPERFAMILY SSF52172 158 275 1.99E-27 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 SMART SM00448 157 271 2.6E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 SMART SM00387 26 136 9.9E-38 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 Gene3D G3DSA:3.30.565.10 12 141 1.0E-39 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 Gene3D G3DSA:3.40.50.2300 151 276 1.3E-26 T 31-10-2018 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 PRINTS PR00344 Bacterial sensor protein C-terminal signature 120 133 1.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 PRINTS PR00344 Bacterial sensor protein C-terminal signature 97 115 1.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 PRINTS PR00344 Bacterial sensor protein C-terminal signature 63 77 1.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 PRINTS PR00344 Bacterial sensor protein C-terminal signature 81 91 1.2E-15 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_19790 ecfbb82ea7326e6a8e3844535733ad44 276 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 134 1.7E-25 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_20475 436ea1ad32ab56b5e09a8e2b42178fa9 122 Gene3D G3DSA:3.40.1350.10 11 122 3.2E-28 T 31-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 BRM88_20475 436ea1ad32ab56b5e09a8e2b42178fa9 122 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 5 118 1.6E-32 T 31-10-2018 IPR003509 Uncharacterised protein family UPF0102 BRM88_20475 436ea1ad32ab56b5e09a8e2b42178fa9 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 116 21.933 T 31-10-2018 IPR003509 Uncharacterised protein family UPF0102 BRM88_20475 436ea1ad32ab56b5e09a8e2b42178fa9 122 SUPERFAMILY SSF52980 7 105 9.65E-16 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_20475 436ea1ad32ab56b5e09a8e2b42178fa9 122 Pfam PF02021 Uncharacterised protein family UPF0102 13 101 7.3E-22 T 31-10-2018 IPR003509 Uncharacterised protein family UPF0102 BRM88_07345 c6ccd8d5d1b06a2227f8ebc6b9144655 199 Pfam PF05433 Glycine zipper 2TM domain 99 137 8.4E-7 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BRM88_18330 7d4dd2666f27308c57f03a37336a9c6f 472 SUPERFAMILY SSF56672 1 228 1.53E-29 T 31-10-2018 BRM88_18330 7d4dd2666f27308c57f03a37336a9c6f 472 Pfam PF00817 impB/mucB/samB family 24 149 1.5E-6 T 31-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BRM88_06775 263ccf97549b6811cc067bbe8c53c020 265 Pfam PF01063 Amino-transferase class IV 25 229 2.3E-29 T 31-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BRM88_06775 263ccf97549b6811cc067bbe8c53c020 265 SUPERFAMILY SSF56752 13 244 2.62E-38 T 31-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BRM88_06775 263ccf97549b6811cc067bbe8c53c020 265 Gene3D G3DSA:3.30.470.10 14 92 2.7E-9 T 31-10-2018 BRM88_06775 263ccf97549b6811cc067bbe8c53c020 265 Gene3D G3DSA:3.20.10.10 109 261 1.4E-15 T 31-10-2018 BRM88_21055 111b7d381add6766cedf74563e430a06 351 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 9 62 4.3E-10 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_21055 111b7d381add6766cedf74563e430a06 351 ProSitePatterns PS00893 Nudix box signature. 245 266 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_21055 111b7d381add6766cedf74563e430a06 351 Pfam PF00293 NUDIX domain 219 335 1.5E-15 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_21055 111b7d381add6766cedf74563e430a06 351 SUPERFAMILY SSF55811 204 349 4.06E-30 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_21055 111b7d381add6766cedf74563e430a06 351 Gene3D G3DSA:3.40.50.620 1 206 2.0E-56 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_21055 111b7d381add6766cedf74563e430a06 351 Gene3D G3DSA:3.90.79.10 207 348 9.4E-43 T 31-10-2018 BRM88_21055 111b7d381add6766cedf74563e430a06 351 Pfam PF01467 Cytidylyltransferase-like 9 69 2.0E-9 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_21055 111b7d381add6766cedf74563e430a06 351 SUPERFAMILY SSF52374 9 180 1.81E-20 T 31-10-2018 BRM88_06170 f355eaff98b5fb82b87acc12d587646d 695 Pfam PF01569 PAP2 superfamily 356 435 2.1E-10 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_06170 f355eaff98b5fb82b87acc12d587646d 695 Pfam PF09335 SNARE associated Golgi protein 39 162 2.5E-19 T 31-10-2018 IPR032816 SNARE associated Golgi protein BRM88_06170 f355eaff98b5fb82b87acc12d587646d 695 Pfam PF14067 LssY C-terminus 499 607 1.2E-9 T 31-10-2018 IPR025902 LssY-like C-terminal domain BRM88_06170 f355eaff98b5fb82b87acc12d587646d 695 Gene3D G3DSA:1.20.144.10 352 447 4.8E-15 T 31-10-2018 BRM88_06170 f355eaff98b5fb82b87acc12d587646d 695 SUPERFAMILY SSF48317 244 444 8.07E-25 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BRM88_23170 c959d29f0356b6164eb5b3f7f2bf9a36 141 Gene3D G3DSA:3.40.190.290 5 130 2.1E-8 T 31-10-2018 BRM88_23170 c959d29f0356b6164eb5b3f7f2bf9a36 141 SUPERFAMILY SSF53850 57 133 3.69E-6 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 316 342 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 378 398 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 61 81 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 168 190 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 91 116 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 PRINTS PR00173 Glutamate-aspartate symporter signature 351 370 8.1E-34 T 31-10-2018 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 SUPERFAMILY SSF118215 14 423 3.4E-98 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 Pfam PF00375 Sodium:dicarboxylate symporter family 14 423 1.1E-107 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BRM88_05985 e23961d63543397b73f6d67dc1fdb187 426 Gene3D G3DSA:1.10.3860.10 9 426 2.6E-118 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_18375 cc9ef8be69ed3a39b435e48878ba7321 209 SUPERFAMILY SSF46689 9 80 8.21E-11 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_18375 cc9ef8be69ed3a39b435e48878ba7321 209 Gene3D G3DSA:1.10.357.10 8 204 1.9E-17 T 31-10-2018 BRM88_18375 cc9ef8be69ed3a39b435e48878ba7321 209 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 4.0E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 SMART SM01387 5 85 4.7E-50 T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 86 1.4E-37 T 31-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 SUPERFAMILY SSF47060 4 86 2.85E-34 T 31-10-2018 IPR009068 S15/NS1, RNA-binding BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 7 85 2.0E-39 T 31-10-2018 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 Pfam PF00312 Ribosomal protein S15 6 85 2.8E-37 T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 Gene3D G3DSA:1.10.287.10 2 86 7.3E-35 T 31-10-2018 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 ProSitePatterns PS00362 Ribosomal protein S15 signature. 36 66 - T 31-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_17185 e7249a8de4e808c11e1fcaf781feddac 86 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 1 86 21.612 T 31-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17115 226d76eb286dbd756f490792b4be0692 171 Gene3D G3DSA:3.30.700.10 9 170 2.7E-16 T 31-10-2018 BRM88_17115 226d76eb286dbd756f490792b4be0692 171 Pfam PF12019 Type II transport protein GspH 45 161 8.6E-12 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 BRM88_17115 226d76eb286dbd756f490792b4be0692 171 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 6.8E-7 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17115 226d76eb286dbd756f490792b4be0692 171 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17115 226d76eb286dbd756f490792b4be0692 171 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 29 1.4E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17115 226d76eb286dbd756f490792b4be0692 171 SUPERFAMILY SSF54523 9 146 7.85E-21 T 31-10-2018 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 236 325 3.6E-37 T 31-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 110 187 1.7E-35 T 31-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 SUPERFAMILY SSF53901 7 325 1.92E-75 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 Gene3D G3DSA:3.40.47.10 2 325 6.6E-134 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 6 324 7.1E-135 T 31-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_04435 e0d1eefe94dc361ba5c0daeb5182c9ec 325 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 5 325 72.238 T 31-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 SMART SM00387 296 404 2.3E-11 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 SUPERFAMILY SSF47384 198 242 1.04E-5 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 9.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 382 9.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 401 9.1E-6 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 Gene3D G3DSA:3.30.565.10 265 407 2.9E-17 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 299 402 1.7E-9 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 Gene3D G3DSA:1.10.287.130 175 256 5.1E-7 T 31-10-2018 BRM88_11600 de7d8218c89d6910a57637969a78fa6a 409 SUPERFAMILY SSF55874 273 402 6.02E-19 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 Gene3D G3DSA:1.10.3020.10 212 287 2.0E-129 T 31-10-2018 BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 TIGRFAM TIGR00976 /NonD: hydrolase CocE/NonD family protein 53 636 9.0E-74 T 31-10-2018 IPR005674 CocE/Serine esterase GO:0016787 BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 SUPERFAMILY SSF49785 398 636 2.55E-72 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 Gene3D G3DSA:3.40.50.1820 46 398 2.0E-129 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 56 342 3.3E-77 T 31-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 Pfam PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain 384 632 6.4E-37 T 31-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 SUPERFAMILY SSF53474 43 404 2.12E-50 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 SMART SM00939 369 633 2.0E-83 T 31-10-2018 IPR013736 Xaa-Pro dipeptidyl-peptidase, C-terminal GO:0008239 BRM88_14035 cbdcc3c95ffba763974b4b453e4da909 637 Gene3D G3DSA:2.60.120.260 400 636 3.4E-81 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_16725 81fa69ac97eea2255d43199eba4fa819 68 Gene3D G3DSA:3.20.20.80 1 68 3.9E-17 T 31-10-2018 BRM88_16725 81fa69ac97eea2255d43199eba4fa819 68 SUPERFAMILY SSF51445 1 62 8.43E-7 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_11290 75222e435635ed65b032a4b7f26109dd 913 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 172 4.5E-5 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_11290 75222e435635ed65b032a4b7f26109dd 913 SUPERFAMILY SSF56935 43 911 5.13E-56 T 31-10-2018 BRM88_11290 75222e435635ed65b032a4b7f26109dd 913 Pfam PF00593 TonB dependent receptor 296 909 8.7E-18 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_11290 75222e435635ed65b032a4b7f26109dd 913 Gene3D G3DSA:2.170.130.10 45 179 3.6E-5 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_14335 796204c992d45eabdaa6c0d8bed19d1e 161 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 26 154 4.4E-46 T 31-10-2018 IPR003791 Protein of unknown function UPF0178 BRM88_14335 796204c992d45eabdaa6c0d8bed19d1e 161 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 10 156 31.221 T 31-10-2018 IPR003791 Protein of unknown function UPF0178 BRM88_12430 41744a25b18c56d1794d4e795f4caf8e 104 Pfam PF14542 GCN5-related N-acetyl-transferase 26 102 3.0E-27 T 31-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase BRM88_12430 41744a25b18c56d1794d4e795f4caf8e 104 SUPERFAMILY SSF55729 17 103 9.17E-27 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_12430 41744a25b18c56d1794d4e795f4caf8e 104 Gene3D G3DSA:3.40.630.30 11 104 1.5E-27 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:2.40.30.170 299 370 4.2E-10 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 384 399 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 331 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 274 295 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 399 414 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 331 354 9.5E-23 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:2.40.50.100 263 298 4.2E-10 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:2.40.30.170 54 66 1.7E-7 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Pfam PF13437 HlyD family secretion protein 262 347 1.3E-13 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:1.10.287.470 108 180 1.7E-7 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:2.40.50.100 67 187 1.7E-7 T 31-10-2018 BRM88_09275 85202093dcdd8d753ac8f79d8631bc63 414 Gene3D G3DSA:1.10.287.470 201 262 4.2E-10 T 31-10-2018 BRM88_16640 1284e8face19d0db69ab096b8e6b0f63 791 SUPERFAMILY SSF48208 103 409 2.21E-12 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_16640 1284e8face19d0db69ab096b8e6b0f63 791 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 56 570 1.9E-164 T 31-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 BRM88_02985 b7194faf86480a859927757447bc6a72 378 Pfam PF01476 LysM domain 32 77 2.5E-14 T 31-10-2018 IPR018392 LysM domain BRM88_02985 b7194faf86480a859927757447bc6a72 378 SUPERFAMILY SSF54106 30 78 1.31E-7 T 31-10-2018 BRM88_02985 b7194faf86480a859927757447bc6a72 378 SMART SM00257 31 79 8.5E-7 T 31-10-2018 IPR018392 LysM domain BRM88_02985 b7194faf86480a859927757447bc6a72 378 Gene3D G3DSA:3.10.350.10 30 77 1.7E-15 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_16295 179dc2ca3cfae23b6f7051aff902faae 167 Pfam PF04965 Gene 25-like lysozyme 39 142 2.2E-18 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD BRM88_16295 179dc2ca3cfae23b6f7051aff902faae 167 SUPERFAMILY SSF160719 39 153 2.35E-9 T 31-10-2018 BRM88_16295 179dc2ca3cfae23b6f7051aff902faae 167 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 11 161 3.1E-22 T 31-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 79 293 26.822 T 31-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 Gene3D G3DSA:3.40.50.620 79 293 2.0E-54 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 84 292 5.9E-44 T 31-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 83 139 2.5E-8 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 SUPERFAMILY SSF52374 82 294 7.41E-46 T 31-10-2018 BRM88_17720 30da6d9354b9074c923edc87f57731e5 299 Pfam PF01467 Cytidylyltransferase-like 83 266 5.3E-25 T 31-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 259 285 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 55 286 1.4E-30 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 SUPERFAMILY SSF88659 208 288 8.41E-16 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 SUPERFAMILY SSF88946 22 129 5.81E-38 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 8 291 54.037 T 31-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Gene3D G3DSA:1.10.10.10 215 288 2.2E-14 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 21 289 8.4E-126 T 31-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 84 97 - T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 PIRSF PIRSF000770 7 291 1.5E-34 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Pfam PF04545 Sigma-70, region 4 236 286 1.8E-14 T 31-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Gene3D G3DSA:1.10.601.10 16 132 1.1E-28 T 31-10-2018 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Pfam PF00140 Sigma-70 factor, region 1.2 22 53 1.3E-4 T 31-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 PRINTS PR00046 Major sigma-70 factor signature 84 97 4.2E-19 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 PRINTS PR00046 Major sigma-70 factor signature 259 274 4.2E-19 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 PRINTS PR00046 Major sigma-70 factor signature 239 251 4.2E-19 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 PRINTS PR00046 Major sigma-70 factor signature 274 285 4.2E-19 T 31-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BRM88_22840 7dbc0e3367cc5ed8d38fb205e67dae1b 291 Pfam PF04542 Sigma-70 region 2 60 129 2.6E-16 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 SUPERFAMILY SSF50346 101 170 2.88E-17 T 31-10-2018 IPR011033 PRC-barrel-like superfamily BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 SUPERFAMILY SSF50447 8 95 7.06E-18 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 Pfam PF05239 PRC-barrel domain 98 165 1.1E-5 T 31-10-2018 IPR027275 PRC-barrel domain BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 170 22.412 T 31-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 Gene3D G3DSA:2.40.30.60 1 95 4.8E-25 T 31-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 Gene3D G3DSA:2.30.30.240 97 170 1.2E-24 T 31-10-2018 BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 Pfam PF01782 RimM N-terminal domain 10 92 7.4E-20 T 31-10-2018 IPR002676 RimM, N-terminal GO:0006364 BRM88_06785 e342b9ba47e668f2468d689085a1e1bb 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 169 2.2E-51 T 31-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 21 158 5.7E-40 T 31-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 Gene3D G3DSA:3.40.50.2000 190 353 2.7E-51 T 31-10-2018 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 17 365 1.2E-107 T 31-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 Gene3D G3DSA:3.40.50.2000 15 189 3.6E-57 T 31-10-2018 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 21 369 35.585 T 31-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 198 361 6.4E-39 T 31-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 BRM88_20405 ebe4309137c64c2c1abdad85c8d1f896 441 SUPERFAMILY SSF53756 21 368 7.07E-113 T 31-10-2018 BRM88_15270 3a67bf087168192a19ffa07134ffafdf 82 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 6 43 5.6E-11 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BRM88_15270 3a67bf087168192a19ffa07134ffafdf 82 SUPERFAMILY SSF89447 2 42 5.76E-11 T 31-10-2018 IPR037914 SpoVT-AbrB domain superfamily BRM88_15270 3a67bf087168192a19ffa07134ffafdf 82 SMART SM00966 3 46 3.4E-11 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BRM88_15270 3a67bf087168192a19ffa07134ffafdf 82 Gene3D G3DSA:2.10.260.10 2 41 1.0E-11 T 31-10-2018 BRM88_15270 3a67bf087168192a19ffa07134ffafdf 82 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 3 42 1.2E-12 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BRM88_20265 4052f6fc44565b90b5aa93bab70b8e29 261 Gene3D G3DSA:2.20.25.570 145 208 6.0E-74 T 31-10-2018 BRM88_20265 4052f6fc44565b90b5aa93bab70b8e29 261 Pfam PF13649 Methyltransferase domain 46 137 4.0E-13 T 31-10-2018 BRM88_20265 4052f6fc44565b90b5aa93bab70b8e29 261 Gene3D G3DSA:3.40.50.150 10 247 6.0E-74 T 31-10-2018 BRM88_20265 4052f6fc44565b90b5aa93bab70b8e29 261 SUPERFAMILY SSF53335 9 241 1.82E-32 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_02700 f037f845e6f41ee78a5b0c4151827087 737 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 13 716 5.4E-206 T 31-10-2018 IPR010019 Integral membrane protein, YccS BRM88_02700 f037f845e6f41ee78a5b0c4151827087 737 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 716 4.2E-227 T 31-10-2018 IPR010020 Integral membrane protein, YccS/YhfK BRM88_02700 f037f845e6f41ee78a5b0c4151827087 737 Pfam PF13515 Fusaric acid resistance protein-like 414 534 2.4E-21 T 31-10-2018 BRM88_02700 f037f845e6f41ee78a5b0c4151827087 737 Pfam PF12805 FUSC-like inner membrane protein yccS 71 357 2.3E-100 T 31-10-2018 IPR032692 Integral membrane protein YccS, N-terminal BRM88_15740 1465f1a0ad222539afb843ce3d366447 124 Gene3D G3DSA:3.40.1230.10 2 124 4.5E-31 T 31-10-2018 IPR036748 MTH938-like superfamily BRM88_15740 1465f1a0ad222539afb843ce3d366447 124 SUPERFAMILY SSF64076 1 123 3.92E-31 T 31-10-2018 IPR036748 MTH938-like superfamily BRM88_15740 1465f1a0ad222539afb843ce3d366447 124 Pfam PF04430 Protein of unknown function (DUF498/DUF598) 20 120 1.7E-23 T 31-10-2018 IPR007523 NDUFAF3/Mth938 domain-containing protein BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 SUPERFAMILY SSF63829 15 304 4.14E-47 T 31-10-2018 BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 240 257 1.2E-8 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 47 64 1.2E-8 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 176 198 1.2E-8 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 46 295 3.6E-43 T 31-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region BRM88_22740 6aca566df5de92a486077f8c21ff6391 306 Gene3D G3DSA:2.120.10.30 1 305 7.2E-124 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 Gene3D G3DSA:3.30.540.10 6 154 1.8E-45 T 31-10-2018 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 Gene3D G3DSA:3.40.190.80 155 257 2.5E-31 T 31-10-2018 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 8 256 41.731 T 31-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 4.4E-7 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 4.4E-7 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 4.4E-7 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 213 227 - T 31-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 Pfam PF00459 Inositol monophosphatase family 9 243 7.2E-48 T 31-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 10 254 5.9E-95 T 31-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 SUPERFAMILY SSF56655 6 258 1.83E-74 T 31-10-2018 BRM88_09365 a9c4e02ffb3e1b17c560cb378304271b 266 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 86 99 - T 31-10-2018 IPR020583 Inositol monophosphatase, metal-binding site BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 SUPERFAMILY SSF47616 90 202 2.73E-25 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 Gene3D G3DSA:1.20.1050.10 88 202 1.0E-38 T 31-10-2018 BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 115 199 6.8E-9 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 SUPERFAMILY SSF52833 6 85 2.55E-19 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 Gene3D G3DSA:3.40.30.10 8 87 2.2E-22 T 31-10-2018 BRM88_07865 1a237a59e79764b41f02651a23d3740c 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 7 82 6.8E-14 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_01370 f98f7a2f33dd90cdb2fcc2af3a88b4de 376 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 159 168 - T 31-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BRM88_01370 f98f7a2f33dd90cdb2fcc2af3a88b4de 376 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 41 314 4.7E-53 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BRM88_01370 f98f7a2f33dd90cdb2fcc2af3a88b4de 376 Gene3D G3DSA:3.20.20.80 34 350 3.1E-102 T 31-10-2018 BRM88_01370 f98f7a2f33dd90cdb2fcc2af3a88b4de 376 SUPERFAMILY SSF51445 34 339 1.99E-83 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_01605 f85dd1a01dc456a685f305609dc6c592 194 SUPERFAMILY SSF52540 13 178 1.6E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01605 f85dd1a01dc456a685f305609dc6c592 194 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 17 176 1.8E-44 T 31-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 BRM88_01605 f85dd1a01dc456a685f305609dc6c592 194 Pfam PF13671 AAA domain 17 133 1.5E-13 T 31-10-2018 BRM88_01605 f85dd1a01dc456a685f305609dc6c592 194 Gene3D G3DSA:3.40.50.300 1 190 4.9E-58 T 31-10-2018 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 Gene3D G3DSA:3.30.70.260 246 334 4.8E-15 T 31-10-2018 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 SUPERFAMILY SSF55021 260 333 1.83E-16 T 31-10-2018 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 Pfam PF00005 ABC transporter 21 169 2.9E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 Pfam PF09383 NIL domain 262 331 7.8E-19 T 31-10-2018 IPR018449 NIL domain BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 SUPERFAMILY SSF52540 1 240 3.08E-83 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 Gene3D G3DSA:3.40.50.300 1 245 4.1E-77 T 31-10-2018 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 SMART SM00382 30 217 9.5E-19 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_03565 c1ff83ce7ec91c7431630845ec0fa084 335 SMART SM00930 260 333 1.7E-24 T 31-10-2018 IPR018449 NIL domain BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 SUPERFAMILY SSF51905 41 428 2.24E-39 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 Pfam PF01266 FAD dependent oxidoreductase 43 393 7.1E-49 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 Gene3D G3DSA:3.50.50.60 43 395 1.2E-67 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 306 321 9.0E-5 T 31-10-2018 BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 43 65 9.0E-5 T 31-10-2018 BRM88_14715 a59a4e328db8fca7bb40000a573316f3 438 Gene3D G3DSA:3.30.9.10 135 356 1.2E-67 T 31-10-2018 BRM88_13700 2edf486e3857a7e6fde020f11bd0ba5f 206 Pfam PF02108 Flagellar assembly protein FliH 73 193 1.7E-19 T 31-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BRM88_12185 ecbaa76ae3da0afabdf8490d136204ad 82 Gene3D G3DSA:1.10.150.250 1 81 7.2E-26 T 31-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily BRM88_12185 ecbaa76ae3da0afabdf8490d136204ad 82 Pfam PF03937 Flavinator of succinate dehydrogenase 8 77 4.1E-23 T 31-10-2018 IPR005631 Flavinator of succinate dehydrogenase BRM88_12185 ecbaa76ae3da0afabdf8490d136204ad 82 SUPERFAMILY SSF109910 2 79 8.5E-24 T 31-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 Pfam PF00849 RNA pseudouridylate synthase 2 149 1.6E-17 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 39 53 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 6 176 2.2E-50 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 Gene3D G3DSA:3.30.70.1560 68 168 5.0E-39 T 31-10-2018 BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 SUPERFAMILY SSF55120 2 178 7.36E-41 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_24050 d23eee685cfbad6a5d1435e198e107d1 190 Gene3D G3DSA:3.30.70.580 1 67 3.2E-23 T 31-10-2018 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 Gene3D G3DSA:3.90.660.10 86 462 7.6E-165 T 31-10-2018 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 SUPERFAMILY SSF51905 44 518 2.5E-49 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 Gene3D G3DSA:3.50.50.60 48 513 7.6E-165 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 Pfam PF01593 Flavin containing amine oxidoreductase 56 516 1.0E-60 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 3.3E-5 T 31-10-2018 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 48 70 3.3E-5 T 31-10-2018 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 Gene3D G3DSA:1.20.1440.240 162 267 7.6E-165 T 31-10-2018 BRM88_06220 914bd470dd64847314d2aa07e85ecd53 527 SUPERFAMILY SSF54373 357 467 5.23E-30 T 31-10-2018 BRM88_13290 9f47ea2f86bf24bda4c097983921cf33 79 Pfam PF13936 Helix-turn-helix domain 6 48 5.8E-15 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_13620 25ec4f3c577d5748143da1ea4035029c 126 Pfam PF00072 Response regulator receiver domain 6 114 2.2E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13620 25ec4f3c577d5748143da1ea4035029c 126 SUPERFAMILY SSF52172 1 117 6.26E-27 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13620 25ec4f3c577d5748143da1ea4035029c 126 SMART SM00448 4 117 1.7E-20 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13620 25ec4f3c577d5748143da1ea4035029c 126 Gene3D G3DSA:3.40.50.2300 1 125 2.0E-27 T 31-10-2018 BRM88_04020 2ea287299c6490117ed751828f8b359c 202 Gene3D G3DSA:2.60.120.590 5 196 1.6E-63 T 31-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily BRM88_04020 2ea287299c6490117ed751828f8b359c 202 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 14 190 3.6E-36 T 31-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like BRM88_04020 2ea287299c6490117ed751828f8b359c 202 SUPERFAMILY SSF51197 5 192 1.79E-61 T 31-10-2018 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Pfam PF01131 DNA topoisomerase 133 562 1.3E-129 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 SUPERFAMILY SSF56712 3 576 3.14E-186 T 31-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BRM88_02960 be31520443be05c6869a86bfe9041760 830 Pfam PF01751 Toprim domain 5 117 1.5E-26 T 31-10-2018 IPR006171 TOPRIM domain BRM88_02960 be31520443be05c6869a86bfe9041760 830 Pfam PF13368 Topoisomerase C-terminal repeat 594 654 1.0E-13 T 31-10-2018 IPR025589 Topoisomerase C-terminal repeat BRM88_02960 be31520443be05c6869a86bfe9041760 830 Pfam PF13368 Topoisomerase C-terminal repeat 714 759 2.4E-12 T 31-10-2018 IPR025589 Topoisomerase C-terminal repeat BRM88_02960 be31520443be05c6869a86bfe9041760 830 Pfam PF13368 Topoisomerase C-terminal repeat 657 703 1.1E-11 T 31-10-2018 IPR025589 Topoisomerase C-terminal repeat BRM88_02960 be31520443be05c6869a86bfe9041760 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 488 502 6.8E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 303 312 6.8E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 166 184 6.8E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 6.8E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 381 397 6.8E-37 T 31-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 674 53.788 T 31-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 SMART SM00437 252 525 3.1E-113 T 31-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Gene3D G3DSA:1.10.460.10 139 565 5.6E-168 T 31-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BRM88_02960 be31520443be05c6869a86bfe9041760 830 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 289 312 - T 31-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Gene3D G3DSA:3.40.50.140 1 138 9.3E-49 T 31-10-2018 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Gene3D G3DSA:1.10.290.10 260 396 5.6E-168 T 31-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BRM88_02960 be31520443be05c6869a86bfe9041760 830 Gene3D G3DSA:2.70.20.10 188 472 5.6E-168 T 31-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BRM88_02960 be31520443be05c6869a86bfe9041760 830 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 618 5.3E-224 T 31-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 SMART SM00436 108 196 9.8E-45 T 31-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BRM88_02960 be31520443be05c6869a86bfe9041760 830 SMART SM00493 3 103 3.4E-32 T 31-10-2018 IPR006171 TOPRIM domain BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 SUPERFAMILY SSF56024 270 461 8.52E-43 T 31-10-2018 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 Gene3D G3DSA:3.30.870.10 300 485 1.0E-26 T 31-10-2018 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 20 486 3.3E-115 T 31-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 SMART SM00155 400 427 0.015 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 SMART SM00155 219 246 0.054 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 SUPERFAMILY SSF56024 74 317 5.49E-47 T 31-10-2018 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 Gene3D G3DSA:3.30.870.10 111 298 5.1E-43 T 31-10-2018 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 Pfam PF13091 PLD-like domain 134 247 5.1E-16 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_00075 9c46a555d42e18fb503f0b9fa1a9d34d 486 Pfam PF13091 PLD-like domain 328 448 1.4E-24 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 Pfam PF08331 Domain of unknown function (DUF1730) 65 144 5.9E-23 T 31-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 17 353 3.8E-150 T 31-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 SUPERFAMILY SSF54862 174 324 2.93E-18 T 31-10-2018 BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 10 319 49.559 T 31-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BRM88_14410 2644cdd7b8823eebe1d169754e46b3d1 355 Pfam PF13484 4Fe-4S double cluster binding domain 196 260 3.1E-19 T 31-10-2018 BRM88_10190 b2109965d5865f3b5b95780ac07115cd 148 PIRSF PIRSF004638 1 148 2.7E-39 T 31-10-2018 IPR005265 Uncharacterised protein family UPF0093 BRM88_10190 b2109965d5865f3b5b95780ac07115cd 148 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 148 1.6E-39 T 31-10-2018 IPR005265 Uncharacterised protein family UPF0093 BRM88_21075 c0e66656631953da13707d26ef488136 603 SUPERFAMILY SSF53335 114 367 2.48E-41 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_21075 c0e66656631953da13707d26ef488136 603 Pfam PF07669 Eco57I restriction-modification methylase 248 348 1.6E-9 T 31-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 BRM88_21075 c0e66656631953da13707d26ef488136 603 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 251 257 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_21075 c0e66656631953da13707d26ef488136 603 Gene3D G3DSA:3.40.50.150 134 366 3.8E-36 T 31-10-2018 BRM88_21075 c0e66656631953da13707d26ef488136 603 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 248 260 3.7E-18 T 31-10-2018 BRM88_21075 c0e66656631953da13707d26ef488136 603 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 132 148 3.7E-18 T 31-10-2018 BRM88_21075 c0e66656631953da13707d26ef488136 603 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 279 303 3.7E-18 T 31-10-2018 BRM88_21075 c0e66656631953da13707d26ef488136 603 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 160 174 3.7E-18 T 31-10-2018 BRM88_15520 a736cb9d36d2b0a98dd3158c49151e5d 210 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 126 139 - T 31-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BRM88_15520 a736cb9d36d2b0a98dd3158c49151e5d 210 Gene3D G3DSA:3.20.20.70 11 209 3.9E-58 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_15520 a736cb9d36d2b0a98dd3158c49151e5d 210 Pfam PF01081 KDPG and KHG aldolase 13 192 1.1E-23 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BRM88_15520 a736cb9d36d2b0a98dd3158c49151e5d 210 SUPERFAMILY SSF51569 7 207 3.11E-52 T 31-10-2018 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Pfam PF01645 Conserved region in glutamate synthase 806 1169 4.3E-147 T 31-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Pfam PF04898 Glutamate synthase central domain 468 750 3.4E-99 T 31-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 SUPERFAMILY SSF51395 457 1205 1.37E-246 T 31-10-2018 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Gene3D G3DSA:3.20.20.70 493 1184 0.0 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Gene3D G3DSA:3.60.20.10 25 555 0.0 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Gene3D G3DSA:3.20.20.70 442 805 0.0 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Pfam PF00310 Glutamine amidotransferases class-II 25 437 3.8E-154 T 31-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Gene3D G3DSA:2.160.20.60 1209 1480 8.6E-100 T 31-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 SUPERFAMILY SSF56235 25 440 7.72E-130 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 SUPERFAMILY SSF69336 1221 1476 3.01E-86 T 31-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BRM88_00845 b3ccd43d921d339e73bbec6ab3778d2c 1490 Pfam PF01493 GXGXG motif 1247 1430 1.5E-75 T 31-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 Pfam PF01578 Cytochrome C assembly protein 33 187 6.2E-29 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 48 228 2.1E-70 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 65 85 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 159 185 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 124 144 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 48 65 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 207 231 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11220 694c5b891e266a60e17ea5a92316827f 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 103 123 5.6E-47 T 31-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_07420 0cc65c773c937dee8ac40e82a094bf2b 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.2E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_07420 0cc65c773c937dee8ac40e82a094bf2b 321 SMART SM01126 137 282 7.8E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_07420 0cc65c773c937dee8ac40e82a094bf2b 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00305 861922da45103ad378d249b37c4f8c28 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_00305 861922da45103ad378d249b37c4f8c28 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 9.1E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00305 861922da45103ad378d249b37c4f8c28 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_02505 e9476391e46b5ba775e4173ae41381d8 182 Gene3D G3DSA:3.30.70.1290 18 165 1.2E-5 T 31-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 BRM88_04700 e186da8b2919b42866e4f5928a0a62c6 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 8 305 5.2E-123 T 31-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BRM88_04700 e186da8b2919b42866e4f5928a0a62c6 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 296 2.8E-71 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BRM88_04700 e186da8b2919b42866e4f5928a0a62c6 306 PIRSF PIRSF026649 5 305 3.0E-91 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BRM88_04700 e186da8b2919b42866e4f5928a0a62c6 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 6 305 42.007 T 31-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BRM88_19910 65a3443c7a441a6bbcd46c4730fa45bc 489 Gene3D G3DSA:3.40.309.10 265 455 2.4E-148 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_19910 65a3443c7a441a6bbcd46c4730fa45bc 489 Gene3D G3DSA:3.40.605.10 34 484 2.4E-148 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_19910 65a3443c7a441a6bbcd46c4730fa45bc 489 SUPERFAMILY SSF53720 16 488 8.9E-138 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_19910 65a3443c7a441a6bbcd46c4730fa45bc 489 Pfam PF00171 Aldehyde dehydrogenase family 25 486 1.8E-140 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 SMART SM00244 21 179 1.2E-52 T 31-10-2018 IPR001107 Band 7 domain BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 SUPERFAMILY SSF117892 53 186 3.79E-40 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 Pfam PF01145 SPFH domain / Band 7 family 25 194 2.0E-32 T 31-10-2018 IPR001107 Band 7 domain BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 PRINTS PR00721 Stomatin signature 131 154 2.2E-32 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 PRINTS PR00721 Stomatin signature 174 195 2.2E-32 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 PRINTS PR00721 Stomatin signature 76 97 2.2E-32 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 PRINTS PR00721 Stomatin signature 155 173 2.2E-32 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 PRINTS PR00721 Stomatin signature 111 128 2.2E-32 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 Pfam PF16200 C-terminal region of band_7 241 298 3.5E-8 T 31-10-2018 IPR032435 Band 7, C-terminal extension Reactome: R-HSA-8949664 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 Gene3D G3DSA:3.30.479.30 51 181 4.9E-41 T 31-10-2018 BRM88_09385 3e7bbae67be18d50dfe543bcc4c1c1a7 321 ProSitePatterns PS01270 Band 7 protein family signature. 135 163 - T 31-10-2018 IPR018080 Band 7/stomatin-like, conserved site BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Gene3D G3DSA:1.10.238.10 86 133 1.5E-9 T 31-10-2018 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Gene3D G3DSA:1.10.238.10 35 82 2.2E-10 T 31-10-2018 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Gene3D G3DSA:1.10.238.10 134 164 7.2E-6 T 31-10-2018 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Pfam PF13202 EF hand 37 50 0.0019 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Pfam PF13202 EF hand 88 104 3.7E-4 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Pfam PF13202 EF hand 141 159 6.0E-6 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Pfam PF13202 EF hand 60 76 2.6E-4 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 Pfam PF13202 EF hand 114 128 4.9E-4 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 ProSitePatterns PS00018 EF-hand calcium-binding domain. 147 159 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_08335 df6ac4b6c1f3017fe8ec9639fa15ee26 193 SUPERFAMILY SSF47473 60 160 2.72E-16 T 31-10-2018 IPR011992 EF-hand domain pair BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 Gene3D G3DSA:2.60.120.330 2 312 4.0E-108 T 31-10-2018 IPR027443 Isopenicillin N synthase-like BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 174 271 7.3E-16 T 31-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 PRINTS PR00682 Isopenicillin N synthase signature 191 212 1.7E-8 T 31-10-2018 BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 PRINTS PR00682 Isopenicillin N synthase signature 227 253 1.7E-8 T 31-10-2018 BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 PRINTS PR00682 Isopenicillin N synthase signature 24 41 1.7E-8 T 31-10-2018 BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 5 122 3.8E-30 T 31-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain BRM88_17345 71af60b79852cdadec7206deb58f77ec 312 SUPERFAMILY SSF51197 4 308 4.67E-85 T 31-10-2018 BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 Gene3D G3DSA:2.120.10.30 4 301 3.8E-90 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 207 224 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 249 267 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 20 37 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 101 122 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 144 166 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 167 187 9.2E-28 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 20 267 5.1E-71 T 31-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region BRM88_15530 0e869fdf82720db5fe4d30c0af7251e0 303 SUPERFAMILY SSF63829 5 297 5.56E-60 T 31-10-2018 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 Gene3D G3DSA:3.40.1780.10 14 344 1.1E-112 T 31-10-2018 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 SUPERFAMILY SSF111337 2 344 3.92E-130 T 31-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 Pfam PF02547 Queuosine biosynthesis protein 4 344 3.5E-129 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 345 46.033 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 Gene3D G3DSA:2.40.10.240 64 161 1.1E-112 T 31-10-2018 BRM88_13120 73027c9b3338199054caa3a154a581c9 356 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 3 344 9.9E-129 T 31-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 SUPERFAMILY SSF47781 310 382 9.45E-8 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 SUPERFAMILY SSF102114 45 184 2.49E-15 T 31-10-2018 BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 Pfam PF04055 Radical SAM superfamily 62 187 7.9E-7 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 SMART SM00729 56 287 0.0095 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 Gene3D G3DSA:3.20.20.70 51 200 5.1E-9 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_03335 9e6684971636ca79d4d6a94234c90399 414 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 3 406 7.3E-168 T 31-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative BRM88_11635 80172b87d541d7256416e6c19927d615 44 Gene3D G3DSA:3.40.50.1860 1 43 2.8E-12 T 31-10-2018 BRM88_11635 80172b87d541d7256416e6c19927d615 44 SUPERFAMILY SSF53681 1 42 1.63E-6 T 31-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BRM88_20730 a46800d77009c9776eefbe6024b241b5 271 Pfam PF01323 DSBA-like thioredoxin domain 149 255 1.5E-8 T 31-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BRM88_20730 a46800d77009c9776eefbe6024b241b5 271 Gene3D G3DSA:3.40.30.10 80 269 1.2E-47 T 31-10-2018 BRM88_20730 a46800d77009c9776eefbe6024b241b5 271 SUPERFAMILY SSF52833 81 261 2.72E-36 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82714 183 266 6.67E-8 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82714 707 793 9.42E-12 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82693 136 324 3.27E-17 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82866 795 1013 1.09E-46 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.70.1430 40 805 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.2090.10 178 275 3.2E-236 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82693 42 131 9.42E-14 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:1.20.1640.10 13 500 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 538 555 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 4.5E-25 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 SUPERFAMILY SSF82866 294 493 7.46E-40 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.70.1320 134 328 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.70.1440 657 854 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:1.20.1640.10 501 1006 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.70.1430 555 656 3.2E-236 T 31-10-2018 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Pfam PF00873 AcrB/AcrD/AcrF family 6 1008 1.4E-154 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_08080 7ea594072264e46b710c022410e02dff 1018 Gene3D G3DSA:3.30.2090.10 708 797 3.2E-236 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 400 5.7E-141 T 31-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 PIRSF PIRSF000521 22 159 3.8E-9 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 PIRSF PIRSF000521 172 404 1.8E-34 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 224 261 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 404 71.021 T 31-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 Pfam PF00202 Aminotransferase class-III 23 399 3.9E-116 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 Gene3D G3DSA:3.90.1150.10 23 394 4.8E-144 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 SUPERFAMILY SSF53383 13 402 3.76E-121 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_06205 d7080aaf96f12d343bd4d8b171127fad 408 Gene3D G3DSA:3.40.640.10 58 306 4.8E-144 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_22355 9ccd1e6154cedbf9cd7f7c54a2c94c1c 455 SMART SM01150 13 410 5.3E-227 T 31-10-2018 IPR009770 Domain of unknown function DUF1338 BRM88_22355 9ccd1e6154cedbf9cd7f7c54a2c94c1c 455 Gene3D G3DSA:3.10.180.80 3 447 8.1E-194 T 31-10-2018 BRM88_22355 9ccd1e6154cedbf9cd7f7c54a2c94c1c 455 Pfam PF07063 Domain of unknown function (DUF1338) 11 410 5.8E-120 T 31-10-2018 IPR009770 Domain of unknown function DUF1338 BRM88_16745 a65b2d556e520aead9e487955bff6b16 528 Gene3D G3DSA:1.20.1740.10 11 462 8.1E-72 T 31-10-2018 BRM88_16745 a65b2d556e520aead9e487955bff6b16 528 Pfam PF13520 Amino acid permease 16 423 1.3E-37 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_16745 a65b2d556e520aead9e487955bff6b16 528 PIRSF PIRSF006060 429 527 28.0 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_16745 a65b2d556e520aead9e487955bff6b16 528 PIRSF PIRSF006060 1 453 2.8E-70 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 PIRSF PIRSF001399 1 146 1.2E-56 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 148 72.109 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 142 2.0E-65 T 31-10-2018 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 SUPERFAMILY SSF52304 3 144 1.44E-59 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 Gene3D G3DSA:3.40.50.9100 1 148 9.6E-63 T 31-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 31-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 2.1E-55 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_02845 db9684687993a4d709386b5fc4f57a16 148 Pfam PF01220 Dehydroquinase class II 4 140 8.5E-58 T 31-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 SUPERFAMILY SSF47384 217 297 4.9E-14 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 Gene3D G3DSA:3.30.565.10 300 447 3.9E-27 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 SMART SM00387 342 451 2.4E-24 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 444 4.7E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 Gene3D G3DSA:1.10.287.130 183 299 2.8E-19 T 31-10-2018 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 SMART SM00388 234 299 9.0E-12 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 Pfam PF08521 Two-component sensor kinase N-terminal 9 157 1.0E-9 T 31-10-2018 IPR013727 Two-component sensor kinase, N-terminal BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 298 5.7E-10 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 392 3.1E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 3.1E-5 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_06055 84c5f81b7a12857be5bc6e208918a2ab 453 SUPERFAMILY SSF55874 307 445 5.24E-26 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 SUPERFAMILY SSF46894 133 203 1.26E-16 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 SUPERFAMILY SSF52172 8 155 7.97E-31 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 Pfam PF00072 Response regulator receiver domain 8 118 3.1E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 Gene3D G3DSA:1.10.10.10 134 200 1.1E-15 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 SMART SM00448 6 117 3.1E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 Gene3D G3DSA:3.40.50.2300 2 132 4.1E-44 T 31-10-2018 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 2.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 2.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 2.2E-8 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 SMART SM00421 141 198 4.5E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_12610 e627b70a2ca99298cabb4eb5cfa5e8ed 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 6.2E-16 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 114 124 2.3E-10 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 125 136 2.3E-10 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 153 165 2.3E-10 T 31-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 Pfam PF01726 LexA DNA binding domain 1 64 1.1E-13 T 31-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 TIGRFAM TIGR00498 lexA: repressor LexA 1 200 1.1E-52 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 Hamap MF_00015 LexA repressor [lexA]. 3 201 28.157 T 31-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 Gene3D G3DSA:2.10.109.10 83 201 1.6E-36 T 31-10-2018 BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 SUPERFAMILY SSF46785 3 68 5.26E-14 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 Pfam PF00717 Peptidase S24-like 117 182 2.5E-15 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 SUPERFAMILY SSF51306 78 199 6.63E-33 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BRM88_18340 13364b0ada21d76923e12711d3d7d453 201 Gene3D G3DSA:1.10.10.10 1 68 3.7E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 23 385 7.2E-144 T 31-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 Pfam PF00155 Aminotransferase class I and II 45 385 2.9E-50 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 SUPERFAMILY SSF53383 15 389 1.51E-94 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 6 389 44.492 T 31-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 Gene3D G3DSA:3.40.640.10 60 291 4.3E-117 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_02260 5bb251fec95c686e7da8d22277a9835f 401 Gene3D G3DSA:3.90.1150.10 46 382 4.3E-117 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_07930 8d8fa7e6983b73d4cd0be405ed30b5fa 60 Pfam PF17067 Ribosomal protein S31e 2 38 7.0E-8 T 31-10-2018 IPR030826 30S ribosomal protein GO:0005840 BRM88_07930 8d8fa7e6983b73d4cd0be405ed30b5fa 60 TIGRFAM TIGR04560 ribo_THX: ribosomal small subunit protein bTHX 1 25 1.0E-12 T 31-10-2018 IPR030826 30S ribosomal protein GO:0005840 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 Gene3D G3DSA:3.10.290.10 38 99 6.5E-13 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 SUPERFAMILY SSF55120 99 271 3.52E-35 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 103 267 2.9E-39 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 Pfam PF00849 RNA pseudouridylate synthase 99 237 2.9E-17 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 Pfam PF01479 S4 domain 39 80 3.2E-8 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 SUPERFAMILY SSF55174 39 122 7.46E-12 T 31-10-2018 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 137 151 - T 31-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 Gene3D G3DSA:3.30.70.580 100 264 5.4E-46 T 31-10-2018 BRM88_19720 1d59ef09c7bdda464959dec391fb59ae 286 Gene3D G3DSA:3.30.70.1560 161 256 5.4E-46 T 31-10-2018 BRM88_08850 8c71b8abed6e77b3bf989e876a0a3d10 181 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 147 4.1E-47 T 31-10-2018 IPR006521 Tail protein I BRM88_08850 8c71b8abed6e77b3bf989e876a0a3d10 181 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 144 2.7E-67 T 31-10-2018 IPR006521 Tail protein I BRM88_10915 17a140f2d3b239d95312cd90581dd542 399 Pfam PF00561 alpha/beta hydrolase fold 45 384 1.3E-27 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_10915 17a140f2d3b239d95312cd90581dd542 399 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 6 397 29.395 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 BRM88_10915 17a140f2d3b239d95312cd90581dd542 399 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 17 295 1.2E-93 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 BRM88_10915 17a140f2d3b239d95312cd90581dd542 399 PIRSF PIRSF000443 1 399 4.0E-136 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 BRM88_10915 17a140f2d3b239d95312cd90581dd542 399 SUPERFAMILY SSF53474 11 397 9.68E-86 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01135 e5c2d39dd31884e0edb7c52c5decbc43 294 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 13 264 9.3E-72 T 31-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BRM88_01135 e5c2d39dd31884e0edb7c52c5decbc43 294 SUPERFAMILY SSF53335 10 215 1.33E-37 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_01135 e5c2d39dd31884e0edb7c52c5decbc43 294 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 5 265 29.99 T 31-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BRM88_01135 e5c2d39dd31884e0edb7c52c5decbc43 294 Pfam PF08241 Methyltransferase domain 51 147 3.2E-19 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BRM88_01135 e5c2d39dd31884e0edb7c52c5decbc43 294 Gene3D G3DSA:3.40.50.150 18 226 1.3E-33 T 31-10-2018 BRM88_10450 1fdd9cf5dfcb839917d9e7d471a90ac6 244 Gene3D G3DSA:3.40.710.10 76 244 4.3E-34 T 31-10-2018 BRM88_10450 1fdd9cf5dfcb839917d9e7d471a90ac6 244 Pfam PF00144 Beta-lactamase 78 242 5.7E-31 T 31-10-2018 IPR001466 Beta-lactamase-related BRM88_10450 1fdd9cf5dfcb839917d9e7d471a90ac6 244 SUPERFAMILY SSF56601 63 242 4.1E-36 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 Gene3D G3DSA:3.30.1330.60 144 268 2.3E-37 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 Pfam PF00691 OmpA family 167 261 1.4E-23 T 31-10-2018 IPR006665 OmpA-like domain BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 212 229 2.1E-9 T 31-10-2018 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 230 249 2.1E-9 T 31-10-2018 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 250 268 2.1E-9 T 31-10-2018 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 74 92 2.1E-9 T 31-10-2018 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 SUPERFAMILY SSF103088 162 267 1.44E-33 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 Gene3D G3DSA:3.40.1520.20 39 143 1.1E-5 T 31-10-2018 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01021 OMPA domain signature 212 228 1.9E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01021 OMPA domain signature 197 212 1.9E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_18755 ee78e2f48994027d5bbc51ca1272f23d 268 PRINTS PR01021 OMPA domain signature 167 189 1.9E-11 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Gene3D G3DSA:2.120.10.30 168 439 1.8E-90 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 8 432 51.669 T 31-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Pfam PF04052 TolB amino-terminal domain 27 132 1.6E-30 T 31-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Gene3D G3DSA:3.40.50.10070 24 167 3.1E-41 T 31-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 SUPERFAMILY SSF69304 157 434 3.01E-53 T 31-10-2018 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Pfam PF07676 WD40-like Beta Propeller Repeat 284 320 1.2E-14 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Pfam PF07676 WD40-like Beta Propeller Repeat 243 276 1.4E-8 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 Pfam PF07676 WD40-like Beta Propeller Repeat 209 231 7.9E-6 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 21 433 1.6E-159 T 31-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 BRM88_08625 15d7e7fae88826e64916864542bf85fc 439 SUPERFAMILY SSF52964 34 164 6.93E-35 T 31-10-2018 BRM88_22820 7ac6bd4ff3b954285d7bb84a2bafac3b 276 Gene3D G3DSA:3.40.50.1010 3 147 7.7E-13 T 31-10-2018 BRM88_22820 7ac6bd4ff3b954285d7bb84a2bafac3b 276 Pfam PF12872 OST-HTH/LOTUS domain 170 233 2.0E-15 T 31-10-2018 IPR025605 OST-HTH/LOTUS domain BRM88_22820 7ac6bd4ff3b954285d7bb84a2bafac3b 276 Gene3D G3DSA:1.10.10.1880 175 239 8.8E-22 T 31-10-2018 BRM88_22820 7ac6bd4ff3b954285d7bb84a2bafac3b 276 Pfam PF01936 NYN domain 10 144 1.8E-31 T 31-10-2018 IPR021139 NYN domain, limkain-b1-type BRM88_09595 bd39e6ac3bbd7fe685f95dc535d21a96 330 Pfam PF07745 Glycosyl hydrolase family 53 94 190 4.9E-30 T 31-10-2018 IPR011683 Glycosyl hydrolase family 53 GO:0015926 BRM88_09595 bd39e6ac3bbd7fe685f95dc535d21a96 330 SUPERFAMILY SSF51445 91 326 5.38E-47 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09595 bd39e6ac3bbd7fe685f95dc535d21a96 330 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 193 254 6.5E-11 T 31-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BRM88_09595 bd39e6ac3bbd7fe685f95dc535d21a96 330 Gene3D G3DSA:3.20.20.80 116 330 6.1E-33 T 31-10-2018 BRM88_04585 bb37d4845a248e4f27906591992409ae 439 SUPERFAMILY SSF53098 18 403 6.98E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04585 bb37d4845a248e4f27906591992409ae 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.1E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 Pfam PF01431 Peptidase family M13 486 686 5.5E-60 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 SUPERFAMILY SSF55486 37 689 1.14E-196 T 31-10-2018 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 Gene3D G3DSA:1.10.1380.10 75 473 1.8E-213 T 31-10-2018 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 Pfam PF05649 Peptidase family M13 49 434 1.3E-89 T 31-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 517 533 3.4E-17 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 478 490 3.4E-17 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 496 508 3.4E-17 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 588 599 3.4E-17 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_03300 3288d660408b2b0001e77a0dd2b1bd6f 689 Gene3D G3DSA:3.40.390.10 44 689 1.8E-213 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Gene3D G3DSA:3.40.50.300 592 811 2.8E-69 T 31-10-2018 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Pfam PF07724 AAA domain (Cdc48 subfamily) 639 807 2.7E-42 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 330 342 - T 31-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SMART SM00382 234 379 1.3E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SMART SM00382 639 799 2.8E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SMART SM01086 813 906 4.9E-8 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Gene3D G3DSA:3.40.50.300 188 378 9.6E-64 T 31-10-2018 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 814 890 4.6E-10 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Gene3D G3DSA:1.10.8.60 813 907 1.6E-10 T 31-10-2018 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SUPERFAMILY SSF52540 588 880 3.95E-62 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 12 896 0.0 T 31-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 717 735 1.4E-34 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 643 661 1.4E-34 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 688 706 1.4E-34 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 750 764 1.4E-34 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SUPERFAMILY SSF52540 195 555 2.9E-72 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 23 75 1.6E-9 T 31-10-2018 IPR004176 Clp, N-terminal BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Gene3D G3DSA:3.40.50.300 380 586 2.5E-41 T 31-10-2018 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Gene3D G3DSA:1.10.1780.10 1 160 1.6E-47 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 239 351 2.9E-10 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_18595 00305ee5e5d9d4810c80d37039fdb868 909 SUPERFAMILY SSF81923 11 127 3.4E-19 T 31-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1076 1107 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1178 1206 2.3E-10 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 662 692 1.3E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 763 794 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1042 1073 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 594 625 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 729 760 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1110 1141 5.6E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 289 320 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 357 388 4.2E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 323 354 2.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1144 1175 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 906 937 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 560 591 2.6E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 628 659 5.7E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 459 490 1.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1008 1039 1.2E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 830 861 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 425 456 2.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 864 875 0.088 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 695 726 1.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 493 524 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 391 422 6.0E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 527 557 4.4E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 974 1005 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 1213 1237 0.056 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 797 827 1.3E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 940 971 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06320 df892fe0577fbc09b09bdbaad439b2fa 1482 Pfam PF03377 TAL effector repeat 876 903 2.4E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_23750 442b1959a5a03f1ed986b1365e035813 464 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 113 407 3.4E-11 T 31-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BRM88_23750 442b1959a5a03f1ed986b1365e035813 464 Gene3D G3DSA:3.90.245.10 82 460 3.8E-126 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_23750 442b1959a5a03f1ed986b1365e035813 464 SUPERFAMILY SSF53590 110 359 7.33E-31 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_08550 4e21d62d495be851a480249052235b35 412 SUPERFAMILY SSF103473 4 379 9.94E-35 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_08550 4e21d62d495be851a480249052235b35 412 Pfam PF07690 Major Facilitator Superfamily 201 381 6.6E-12 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_08550 4e21d62d495be851a480249052235b35 412 Gene3D G3DSA:1.20.1250.20 198 379 3.6E-15 T 31-10-2018 BRM88_08550 4e21d62d495be851a480249052235b35 412 Gene3D G3DSA:1.20.1250.20 1 187 1.3E-10 T 31-10-2018 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Gene3D G3DSA:3.90.226.10 6 311 6.5E-86 T 31-10-2018 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Gene3D G3DSA:3.40.50.720 312 498 8.1E-52 T 31-10-2018 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 319 491 7.4E-46 T 31-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 SUPERFAMILY SSF48179 495 595 7.14E-22 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 586 1.8E-15 T 31-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 SUPERFAMILY SSF48179 603 681 5.36E-17 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Pfam PF00378 Enoyl-CoA hydratase/isomerase 19 207 1.5E-35 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 SUPERFAMILY SSF52096 10 304 5.53E-66 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 Gene3D G3DSA:1.10.1040.50 499 685 1.1E-50 T 31-10-2018 BRM88_09640 62e8e36dec9eedff9bbfe14977592ff7 693 SUPERFAMILY SSF51735 316 495 4.6E-43 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_05810 7c93da91a17aacdee6e4c08b4ef85b08 802 Pfam PF07793 Protein of unknown function (DUF1631) 18 788 2.9E-194 T 31-10-2018 IPR012434 Protein of unknown function DUF1631 BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 31-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 SUPERFAMILY SSF51735 139 314 9.4E-39 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 SMART SM01003 6 139 3.3E-50 T 31-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 Gene3D G3DSA:3.40.50.720 139 317 2.6E-126 T 31-10-2018 BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 143 354 7.4E-61 T 31-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 SUPERFAMILY SSF52283 5 170 3.83E-42 T 31-10-2018 BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 SMART SM01002 148 310 2.9E-74 T 31-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 7 139 7.4E-34 T 31-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BRM88_19400 2911740c4dd20ba8e7defd36ba19d273 365 Gene3D G3DSA:3.40.50.720 7 355 2.6E-126 T 31-10-2018 BRM88_00220 68841629060f5851145cd3913adb1b57 429 SUPERFAMILY SSF52540 81 365 1.16E-67 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00220 68841629060f5851145cd3913adb1b57 429 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BRM88_00220 68841629060f5851145cd3913adb1b57 429 Pfam PF00271 Helicase conserved C-terminal domain 239 344 5.1E-27 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_00220 68841629060f5851145cd3913adb1b57 429 SMART SM00490 263 344 2.0E-29 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_00220 68841629060f5851145cd3913adb1b57 429 SMART SM00487 24 227 8.2E-52 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_00220 68841629060f5851145cd3913adb1b57 429 Gene3D G3DSA:3.40.50.300 219 378 9.7E-47 T 31-10-2018 BRM88_00220 68841629060f5851145cd3913adb1b57 429 Pfam PF00270 DEAD/DEAH box helicase 29 198 1.2E-43 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_00220 68841629060f5851145cd3913adb1b57 429 Gene3D G3DSA:3.40.50.300 2 215 2.6E-68 T 31-10-2018 BRM88_18140 6ae703e276354f1640ae130a05e180a0 179 SMART SM00506 2 137 4.7E-53 T 31-10-2018 IPR002589 Macro domain BRM88_18140 6ae703e276354f1640ae130a05e180a0 179 Gene3D G3DSA:3.40.220.10 1 179 3.9E-73 T 31-10-2018 BRM88_18140 6ae703e276354f1640ae130a05e180a0 179 Pfam PF01661 Macro domain 19 137 5.3E-43 T 31-10-2018 IPR002589 Macro domain BRM88_18140 6ae703e276354f1640ae130a05e180a0 179 SUPERFAMILY SSF52949 1 171 1.09E-62 T 31-10-2018 BRM88_01500 90af58686de08d0ff68a477c66e12d3a 220 PIRSF PIRSF004649 9 219 1.0E-56 T 31-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BRM88_01500 90af58686de08d0ff68a477c66e12d3a 220 Gene3D G3DSA:3.10.450.710 34 210 6.3E-37 T 31-10-2018 BRM88_01500 90af58686de08d0ff68a477c66e12d3a 220 Pfam PF05494 MlaC protein 45 206 1.4E-39 T 31-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BRM88_17335 616e7066683ea02ea838f977907da608 788 SUPERFAMILY SSF55073 357 500 4.63E-36 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_17335 616e7066683ea02ea838f977907da608 788 SMART SM00052 522 767 9.5E-98 T 31-10-2018 IPR001633 EAL domain BRM88_17335 616e7066683ea02ea838f977907da608 788 Pfam PF00672 HAMP domain 294 341 3.1E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_17335 616e7066683ea02ea838f977907da608 788 Gene3D G3DSA:3.30.70.270 349 523 1.6E-43 T 31-10-2018 BRM88_17335 616e7066683ea02ea838f977907da608 788 SMART SM00304 294 346 2.1E-10 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_17335 616e7066683ea02ea838f977907da608 788 Pfam PF00563 EAL domain 529 762 2.1E-67 T 31-10-2018 IPR001633 EAL domain BRM88_17335 616e7066683ea02ea838f977907da608 788 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 350 500 4.1E-31 T 31-10-2018 IPR000160 GGDEF domain BRM88_17335 616e7066683ea02ea838f977907da608 788 SUPERFAMILY SSF141868 528 775 3.01E-83 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_17335 616e7066683ea02ea838f977907da608 788 SUPERFAMILY SSF158472 294 342 2.62E-7 T 31-10-2018 BRM88_17335 616e7066683ea02ea838f977907da608 788 Gene3D G3DSA:1.20.1480.50 258 348 2.8E-9 T 31-10-2018 BRM88_17335 616e7066683ea02ea838f977907da608 788 Pfam PF00990 Diguanylate cyclase, GGDEF domain 352 501 1.5E-36 T 31-10-2018 IPR000160 GGDEF domain BRM88_17335 616e7066683ea02ea838f977907da608 788 Gene3D G3DSA:3.20.20.450 524 773 7.7E-91 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_17335 616e7066683ea02ea838f977907da608 788 SMART SM00267 341 512 4.6E-42 T 31-10-2018 IPR000160 GGDEF domain BRM88_17335 616e7066683ea02ea838f977907da608 788 Pfam PF14827 Double sensory domain of two-component sensor kinase 57 247 5.9E-12 T 31-10-2018 IPR029150 Double Cache domain 3 BRM88_17395 adf2144a46d1c3645c83c412586cbf82 688 Gene3D G3DSA:1.20.58.2200 634 688 3.6E-12 T 31-10-2018 IPR038440 FimV, C-terminal domain superfamily BRM88_17395 adf2144a46d1c3645c83c412586cbf82 688 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 645 687 1.9E-14 T 31-10-2018 IPR020011 Motility protein FimV, C-terminal BRM88_17395 adf2144a46d1c3645c83c412586cbf82 688 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 239 312 7.3E-22 T 31-10-2018 IPR020012 Motility protein FimV, N-terminal BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 SUPERFAMILY SSF47413 13 72 1.97E-14 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 16 34 - T 31-10-2018 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 SUPERFAMILY SSF53822 87 342 9.03E-58 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 Gene3D G3DSA:1.10.260.40 6 67 2.4E-17 T 31-10-2018 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 Pfam PF13377 Periplasmic binding protein-like domain 185 342 3.6E-38 T 31-10-2018 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 Gene3D G3DSA:3.40.50.2300 177 305 1.2E-65 T 31-10-2018 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 16 58 2.2E-11 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 Gene3D G3DSA:3.40.50.2300 68 322 1.2E-65 T 31-10-2018 BRM88_05595 ebf7923e1d0cbb3b5acbe345842ab72b 343 SMART SM00354 13 83 7.1E-16 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 Gene3D G3DSA:3.40.50.20 1 102 3.1E-34 T 31-10-2018 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 352 2.0E-118 T 31-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 351 41.84 T 31-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 Pfam PF02222 ATP-grasp domain 107 279 6.6E-59 T 31-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 SUPERFAMILY SSF51246 304 371 7.85E-15 T 31-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 SUPERFAMILY SSF52440 2 95 1.58E-22 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 SUPERFAMILY SSF56059 98 299 6.54E-64 T 31-10-2018 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 Gene3D G3DSA:3.30.470.20 181 368 3.2E-69 T 31-10-2018 BRM88_17155 590eccefd6cca0d86b76425bc5bc0f80 381 Gene3D G3DSA:3.30.1490.20 103 180 6.6E-29 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_04070 c4ba940133459669e994f343865be9ca 257 Pfam PF01066 CDP-alcohol phosphatidyltransferase 16 79 1.0E-14 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_04070 c4ba940133459669e994f343865be9ca 257 Gene3D G3DSA:1.20.120.1760 10 193 5.2E-13 T 31-10-2018 BRM88_04070 c4ba940133459669e994f343865be9ca 257 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 23 192 1.7E-33 T 31-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 BRM88_04070 c4ba940133459669e994f343865be9ca 257 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_03150 7fac0bad246b0b26aa4141596a235586 478 Pfam PF12679 ABC-2 family transporter protein 7 264 1.0E-21 T 31-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BRM88_03150 7fac0bad246b0b26aa4141596a235586 478 Pfam PF12040 Domain of unknown function (DUF3526) 271 438 3.0E-47 T 31-10-2018 IPR021913 Protein of unknown function DUF3526 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 SUPERFAMILY SSF51735 138 310 1.73E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 Gene3D G3DSA:3.40.50.720 147 291 3.7E-88 T 31-10-2018 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 Gene3D G3DSA:3.90.180.10 16 327 3.7E-88 T 31-10-2018 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 Pfam PF00107 Zinc-binding dehydrogenase 176 304 1.9E-26 T 31-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 31-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 SUPERFAMILY SSF50129 1 167 2.93E-48 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 SMART SM00829 11 343 3.0E-7 T 31-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BRM88_07935 2b264d2a7ab4d44f71ab544cc5198c2a 346 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 132 1.6E-29 T 31-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 SUPERFAMILY SSF50249 3 78 9.25E-12 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 Hamap MF_00201 DNA repair protein RecO [recO]. 2 236 19.607 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 154 2.0E-21 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 Gene3D G3DSA:2.40.50.140 3 79 3.9E-25 T 31-10-2018 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 Pfam PF02565 Recombination protein O C terminal 85 231 2.2E-16 T 31-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 SUPERFAMILY SSF57863 87 153 2.17E-5 T 31-10-2018 IPR037278 ARFGAP/RecO-like zinc finger BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 Gene3D G3DSA:1.20.1440.120 82 240 1.9E-38 T 31-10-2018 BRM88_09685 7870e7599fcebf9854cec472ba8d172a 240 Pfam PF11967 Recombination protein O N terminal 3 78 1.7E-20 T 31-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal BRM88_03055 e86d878d7235d81ea35a403fe3e1f37f 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 144 2.3E-52 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BRM88_03055 e86d878d7235d81ea35a403fe3e1f37f 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 3.2E-51 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BRM88_03055 e86d878d7235d81ea35a403fe3e1f37f 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 146 33.61 T 31-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BRM88_03055 e86d878d7235d81ea35a403fe3e1f37f 146 SUPERFAMILY SSF69500 1 144 2.88E-52 T 31-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BRM88_03055 e86d878d7235d81ea35a403fe3e1f37f 146 Gene3D G3DSA:3.50.80.10 1 145 6.0E-53 T 31-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BRM88_05950 d479c6ba01f3244002dda2a87309c344 320 Pfam PF01882 Protein of unknown function DUF58 68 151 6.4E-19 T 31-10-2018 IPR002881 Domain of unknown function DUF58 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 31-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 8 391 4.2E-130 T 31-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 Pfam PF01494 FAD binding domain 8 334 1.4E-27 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 7.5E-18 T 31-10-2018 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 7.5E-18 T 31-10-2018 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 7.5E-18 T 31-10-2018 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 7.5E-18 T 31-10-2018 BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 SUPERFAMILY SSF51905 8 386 2.71E-54 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 Gene3D G3DSA:3.50.50.60 8 339 5.7E-104 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19960 bfb55ff1188277f548024ffa0650d1d5 393 Gene3D G3DSA:3.30.9.50 82 270 5.7E-104 T 31-10-2018 BRM88_06570 26d21e354b64ff713f0d7b44b850bbf4 152 Gene3D G3DSA:3.40.930.10 7 146 1.8E-36 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BRM88_06570 26d21e354b64ff713f0d7b44b850bbf4 152 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 16 142 2.2E-30 T 31-10-2018 IPR002178 PTS EIIA type-2 domain BRM88_06570 26d21e354b64ff713f0d7b44b850bbf4 152 SUPERFAMILY SSF55804 15 143 1.44E-32 T 31-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BRM88_06570 26d21e354b64ff713f0d7b44b850bbf4 152 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 49 65 - T 31-10-2018 IPR002178 PTS EIIA type-2 domain BRM88_07695 283e3e59cc2a2744dcce395107c2c884 270 Pfam PF00112 Papain family cysteine protease 54 255 1.3E-10 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_07695 283e3e59cc2a2744dcce395107c2c884 270 ProSitePatterns PS00639 Eukaryotic thiol (cysteine) proteases histidine active site. 222 232 - T 31-10-2018 IPR025660 Cysteine peptidase, histidine active site Reactome: R-HSA-2132295 BRM88_07695 283e3e59cc2a2744dcce395107c2c884 270 SUPERFAMILY SSF54001 40 258 1.79E-35 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_07695 283e3e59cc2a2744dcce395107c2c884 270 SMART SM00645 53 267 6.5E-6 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_07695 283e3e59cc2a2744dcce395107c2c884 270 Gene3D G3DSA:3.90.70.10 27 269 1.7E-39 T 31-10-2018 BRM88_24525 cb69d5822180ab41e7407f846973a262 235 Pfam PF15648 Restriction endonuclease fold toxin 5 135 212 1.8E-14 T 31-10-2018 IPR028904 Tox-REase-5 domain BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 259 102.216 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 SUPERFAMILY SSF75217 2 247 2.75E-91 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 Gene3D G3DSA:1.10.1270.20 166 256 2.3E-27 T 31-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 223 7.1E-55 T 31-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 PIRSF PIRSF000386 1 253 7.6E-88 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 Gene3D G3DSA:3.40.1280.10 1 165 1.1E-58 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_06790 fa6206aaf8b432d109b115ffab5d6764 259 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 229 1.4E-81 T 31-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BRM88_20575 d61fd49e9d4312d1b04f13dc24e7877c 174 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 84.149 T 31-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BRM88_20575 d61fd49e9d4312d1b04f13dc24e7877c 174 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.0E-58 T 31-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BRM88_20575 d61fd49e9d4312d1b04f13dc24e7877c 174 Pfam PF03477 ATP cone domain 50 136 3.7E-14 T 31-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 BRM88_19000 755337141cd60232d578249021bfea3a 208 SMART SM00363 97 161 1.2E-16 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19000 755337141cd60232d578249021bfea3a 208 Gene3D G3DSA:3.10.290.10 96 193 3.9E-78 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_19000 755337141cd60232d578249021bfea3a 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 3.6E-77 T 31-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BRM88_19000 755337141cd60232d578249021bfea3a 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 34.619 T 31-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BRM88_19000 755337141cd60232d578249021bfea3a 208 Gene3D G3DSA:1.10.1050.10 6 208 3.9E-78 T 31-10-2018 BRM88_19000 755337141cd60232d578249021bfea3a 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 95 119 - T 31-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19000 755337141cd60232d578249021bfea3a 208 SUPERFAMILY SSF55174 2 208 1.96E-65 T 31-10-2018 BRM88_19000 755337141cd60232d578249021bfea3a 208 Pfam PF01479 S4 domain 98 144 1.1E-17 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19000 755337141cd60232d578249021bfea3a 208 SMART SM01390 3 96 7.6E-48 T 31-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BRM88_19000 755337141cd60232d578249021bfea3a 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 96 4.0E-31 T 31-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BRM88_15045 e2715d18d3369e21c93596751cc374b6 601 Pfam PF00593 TonB dependent receptor 179 599 5.4E-42 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_15045 e2715d18d3369e21c93596751cc374b6 601 Gene3D G3DSA:2.170.130.10 50 173 4.1E-23 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_15045 e2715d18d3369e21c93596751cc374b6 601 SUPERFAMILY SSF56935 64 601 8.96E-78 T 31-10-2018 BRM88_15045 e2715d18d3369e21c93596751cc374b6 601 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 173 1.0E-20 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_15045 e2715d18d3369e21c93596751cc374b6 601 Gene3D G3DSA:2.40.170.20 174 601 2.1E-70 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_04030 c2741ebcacb4161a115b89339221e60f 214 SUPERFAMILY SSF159594 34 205 4.97E-43 T 31-10-2018 BRM88_04030 c2741ebcacb4161a115b89339221e60f 214 Gene3D G3DSA:3.40.50.10610 23 214 2.2E-70 T 31-10-2018 BRM88_04030 c2741ebcacb4161a115b89339221e60f 214 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 35 195 8.1E-35 T 31-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component BRM88_09620 6bd377133d0e861d3c76dfdedee5737b 265 Gene3D G3DSA:3.90.226.10 8 265 1.6E-78 T 31-10-2018 BRM88_09620 6bd377133d0e861d3c76dfdedee5737b 265 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BRM88_09620 6bd377133d0e861d3c76dfdedee5737b 265 SUPERFAMILY SSF52096 12 264 1.84E-76 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_09620 6bd377133d0e861d3c76dfdedee5737b 265 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 264 1.7E-54 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_04705 1487d110e5d2292c196f5597623969ef 438 Gene3D G3DSA:3.40.50.11720 40 217 2.5E-47 T 31-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 BRM88_04705 1487d110e5d2292c196f5597623969ef 438 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 42 219 4.5E-64 T 31-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 BRM88_04705 1487d110e5d2292c196f5597623969ef 438 SUPERFAMILY SSF53756 58 410 4.71E-20 T 31-10-2018 BRM88_04705 1487d110e5d2292c196f5597623969ef 438 Gene3D G3DSA:3.40.50.2000 229 411 8.3E-66 T 31-10-2018 BRM88_16695 94defe7769ca9409b522653e38f0a3c8 945 Pfam PF07715 TonB-dependent Receptor Plug Domain 74 189 6.5E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_16695 94defe7769ca9409b522653e38f0a3c8 945 Gene3D G3DSA:2.170.130.10 53 193 3.1E-35 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_16695 94defe7769ca9409b522653e38f0a3c8 945 Pfam PF00593 TonB dependent receptor 369 943 2.7E-36 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_16695 94defe7769ca9409b522653e38f0a3c8 945 SUPERFAMILY SSF56935 59 945 5.19E-79 T 31-10-2018 BRM88_07565 c3e590360ddfd9065a67671b73939bc4 802 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 306 419 1.1E-14 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_07565 c3e590360ddfd9065a67671b73939bc4 802 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 130 295 9.4E-14 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_22170 e38093412cc0013502ec7f5b6f671669 130 SUPERFAMILY SSF54211 6 130 1.44E-47 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_22170 e38093412cc0013502ec7f5b6f671669 130 Gene3D G3DSA:3.30.230.10 1 130 2.6E-52 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_22170 e38093412cc0013502ec7f5b6f671669 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 32.597 T 31-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid BRM88_22170 e38093412cc0013502ec7f5b6f671669 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.4E-46 T 31-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 BRM88_22170 e38093412cc0013502ec7f5b6f671669 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 31-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 BRM88_04150 b78a4026efe2ca31831b7033d3da7662 104 SUPERFAMILY SSF53335 9 103 1.0E-12 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_04150 b78a4026efe2ca31831b7033d3da7662 104 Gene3D G3DSA:3.40.50.150 17 104 7.4E-19 T 31-10-2018 BRM88_04150 b78a4026efe2ca31831b7033d3da7662 104 Pfam PF08241 Methyltransferase domain 42 102 1.6E-8 T 31-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BRM88_20545 b0ba041d9c1c81b99731239d528d4ce4 154 Gene3D G3DSA:3.40.50.960 1 153 5.4E-56 T 31-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20545 b0ba041d9c1c81b99731239d528d4ce4 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 149 4.4E-43 T 31-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20545 b0ba041d9c1c81b99731239d528d4ce4 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 150 4.9E-52 T 31-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20545 b0ba041d9c1c81b99731239d528d4ce4 154 SUPERFAMILY SSF52121 4 153 1.7E-53 T 31-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20545 b0ba041d9c1c81b99731239d528d4ce4 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 28.32 T 31-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 SMART SM00862 157 233 4.6E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 1.8E-20 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 Pfam PF00072 Response regulator receiver domain 13 122 9.0E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 SUPERFAMILY SSF52172 9 190 1.34E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 Gene3D G3DSA:1.10.10.10 130 236 4.2E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 Gene3D G3DSA:3.40.50.2300 3 129 9.1E-34 T 31-10-2018 BRM88_20490 5946b2ed3a3705270d22f3f72e297486 238 SMART SM00448 11 121 2.5E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_19905 e36bb3f1cc9e4e79113b316fd4a24d00 275 Gene3D G3DSA:3.90.226.10 1 269 1.3E-68 T 31-10-2018 BRM88_19905 e36bb3f1cc9e4e79113b316fd4a24d00 275 SUPERFAMILY SSF52096 4 259 2.33E-69 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_19905 e36bb3f1cc9e4e79113b316fd4a24d00 275 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 7.8E-49 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 31-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 SUPERFAMILY SSF52833 5 159 1.96E-61 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 PRINTS PR01011 Glutathione peroxidase family signature 22 39 6.1E-21 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 PRINTS PR01011 Glutathione peroxidase family signature 123 132 6.1E-21 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 PRINTS PR01011 Glutathione peroxidase family signature 57 73 6.1E-21 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 Pfam PF00255 Glutathione peroxidase 6 111 1.9E-40 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 PIRSF PIRSF000303 1 161 7.4E-65 T 31-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BRM88_12380 3f9799c49aa8e5f37e4dba547c0006e5 161 Gene3D G3DSA:3.40.30.10 1 161 9.6E-67 T 31-10-2018 BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 Gene3D G3DSA:3.30.420.40 94 185 2.7E-67 T 31-10-2018 BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 SUPERFAMILY SSF53067 1 101 5.61E-29 T 31-10-2018 BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 SUPERFAMILY SSF53067 106 214 3.24E-20 T 31-10-2018 BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 Gene3D G3DSA:3.30.420.40 3 216 2.7E-67 T 31-10-2018 BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 Pfam PF00814 Glycoprotease family 28 220 3.4E-32 T 31-10-2018 IPR000905 Gcp-like domain BRM88_09095 65009b356515983bfb2b6aa25e5eab60 239 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 216 3.1E-57 T 31-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 Gene3D G3DSA:2.60.40.290 404 486 1.4E-15 T 31-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 SUPERFAMILY SSF49384 400 484 4.05E-19 T 31-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 SMART SM00637 406 486 1.0E-6 T 31-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 SUPERFAMILY SSF51445 22 373 1.08E-81 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 Gene3D G3DSA:3.20.20.80 28 370 1.3E-122 T 31-10-2018 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 174 183 - T 31-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 Pfam PF00553 Cellulose binding domain 411 484 5.4E-14 T 31-10-2018 IPR001919 Carbohydrate-binding type-2 domain GO:0004553|GO:0005975|GO:0030246 BRM88_21415 af6cc26dc8c6dbbb3a5b394f2756851c 486 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 34 342 3.9E-56 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 225 355 6.4E-20 T 31-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 PRINTS PR01002 Flagellar protein FlgJ signature 16 39 1.6E-11 T 31-10-2018 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 PRINTS PR01002 Flagellar protein FlgJ signature 61 83 1.6E-11 T 31-10-2018 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 Gene3D G3DSA:1.10.530.10 215 357 8.9E-47 T 31-10-2018 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 Pfam PF10135 Rod binding protein 38 84 1.3E-12 T 31-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 17 355 2.4E-72 T 31-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 BRM88_13570 ec17b4a509a30567e991cd82331afc39 392 SMART SM00047 207 368 1.6E-39 T 31-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 SUPERFAMILY SSF52540 33 385 9.46E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 Pfam PF00271 Helicase conserved C-terminal domain 266 371 2.7E-12 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 15 828 0.0 T 31-10-2018 IPR026362 DEXH box helicase, DNA ligase-associated BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 SMART SM00490 293 375 4.4E-15 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 PIRSF PIRSF037307 10 831 3.3E-138 T 31-10-2018 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 Gene3D G3DSA:3.40.50.300 16 228 4.6E-41 T 31-10-2018 BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 Pfam PF00270 DEAD/DEAH box helicase 28 214 1.4E-23 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 SMART SM00487 22 244 1.9E-24 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 Pfam PF08494 DEAD/H associated 612 799 2.4E-47 T 31-10-2018 IPR013701 DEAD/H associated GO:0005524|GO:0016818 BRM88_09765 764c55070d812109423cc0ebce86cdf4 833 Gene3D G3DSA:3.40.50.300 260 408 8.5E-23 T 31-10-2018 BRM88_14515 c5aa831f4abcb6995aa87b674d4ca48e 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_14515 c5aa831f4abcb6995aa87b674d4ca48e 394 Pfam PF00872 Transposase, Mutator family 11 368 1.6E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_21870 a0553ee7ee20bab817dc49d1a6f56470 268 SMART SM00644 38 173 4.2E-25 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_21870 a0553ee7ee20bab817dc49d1a6f56470 268 SUPERFAMILY SSF55846 36 189 1.24E-45 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_21870 a0553ee7ee20bab817dc49d1a6f56470 268 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 49 174 3.5E-29 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_21870 a0553ee7ee20bab817dc49d1a6f56470 268 Gene3D G3DSA:3.40.80.10 33 185 3.5E-46 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_06230 2daf16f8a7de5ffc971a3918e65d373d 167 Pfam PF01042 Endoribonuclease L-PSP 50 165 3.9E-15 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BRM88_06230 2daf16f8a7de5ffc971a3918e65d373d 167 Gene3D G3DSA:3.30.1330.40 24 167 4.1E-25 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_06230 2daf16f8a7de5ffc971a3918e65d373d 167 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 141 160 - T 31-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 BRM88_06230 2daf16f8a7de5ffc971a3918e65d373d 167 SUPERFAMILY SSF55298 30 167 5.03E-22 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Gene3D G3DSA:3.90.980.10 113 242 2.6E-38 T 31-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SMART SM00400 35 89 6.2E-32 T 31-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Gene3D G3DSA:1.20.50.20 370 427 1.1E-13 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 124 253 4.0E-38 T 31-10-2018 IPR013264 DNA primase, catalytic core, N-terminal BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Hamap MF_00974 DNA primase [dnaG]. 3 577 28.786 T 31-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SUPERFAMILY SSF56731 114 424 5.62E-104 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SMART SM00766 451 576 1.8E-33 T 31-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Gene3D G3DSA:3.90.580.10 1 101 2.1E-37 T 31-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Pfam PF08278 DNA primase DnaG DnaB-binding 452 575 1.7E-27 T 31-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SMART SM00493 261 332 1.1E-20 T 31-10-2018 IPR006171 TOPRIM domain BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SUPERFAMILY SSF57783 1 99 1.29E-35 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 PIRSF PIRSF002811 1 581 2.3E-136 T 31-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 TIGRFAM TIGR01391 dnaG: DNA primase 3 419 3.6E-137 T 31-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Pfam PF01807 CHC2 zinc finger 5 100 9.5E-38 T 31-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Gene3D G3DSA:1.10.860.10 438 581 9.0E-38 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 SUPERFAMILY SSF117023 448 579 5.49E-34 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Pfam PF13155 Toprim-like 264 349 1.1E-13 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Gene3D G3DSA:3.40.1360.10 243 369 5.7E-41 T 31-10-2018 BRM88_22040 d82ecfd7b481cd3547268c4b8d584699 582 Pfam PF10410 DnaB-helicase binding domain of primase 371 424 2.2E-10 T 31-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 Gene3D G3DSA:3.30.428.10 1 110 2.4E-33 T 31-10-2018 IPR036265 HIT-like superfamily BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 Pfam PF01230 HIT domain 11 107 2.0E-24 T 31-10-2018 IPR001310 Histidine triad (HIT) protein BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 31-10-2018 IPR019808 Histidine triad, conserved site BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 PRINTS PR00332 Histidine triad family signature 95 105 7.2E-20 T 31-10-2018 IPR001310 Histidine triad (HIT) protein BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 PRINTS PR00332 Histidine triad family signature 26 44 7.2E-20 T 31-10-2018 IPR001310 Histidine triad (HIT) protein BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 PRINTS PR00332 Histidine triad family signature 5 21 7.2E-20 T 31-10-2018 IPR001310 Histidine triad (HIT) protein BRM88_05410 210e9ec034ebcc23353db7fd16f2e4f4 116 SUPERFAMILY SSF54197 2 109 2.69E-34 T 31-10-2018 IPR036265 HIT-like superfamily BRM88_12035 3f04be6b74127aed451bd280e4248652 223 Gene3D G3DSA:3.30.420.10 115 218 2.3E-10 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_12035 3f04be6b74127aed451bd280e4248652 223 Pfam PF00665 Integrase core domain 122 207 1.3E-18 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_12035 3f04be6b74127aed451bd280e4248652 223 Pfam PF13276 HTH-like domain 41 96 1.9E-14 T 31-10-2018 IPR025948 HTH-like domain BRM88_12035 3f04be6b74127aed451bd280e4248652 223 SUPERFAMILY SSF53098 114 207 1.09E-22 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_12660 32dbe158c86a28af7578806a899ece05 361 Gene3D G3DSA:3.40.640.10 17 255 3.2E-77 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_12660 32dbe158c86a28af7578806a899ece05 361 Gene3D G3DSA:3.90.1150.10 257 361 1.0E-36 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_12660 32dbe158c86a28af7578806a899ece05 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 187 206 - T 31-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BRM88_12660 32dbe158c86a28af7578806a899ece05 361 Pfam PF00266 Aminotransferase class-V 5 347 1.1E-47 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_12660 32dbe158c86a28af7578806a899ece05 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 5 360 1.0E-147 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BRM88_12660 32dbe158c86a28af7578806a899ece05 361 SUPERFAMILY SSF53383 1 359 1.88E-105 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_12660 32dbe158c86a28af7578806a899ece05 361 PIRSF PIRSF000525 1 361 4.9E-138 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BRM88_12660 32dbe158c86a28af7578806a899ece05 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 47.878 T 31-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 Pfam PF00633 Helix-hairpin-helix motif 114 142 7.1E-8 T 31-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 ProSitePatterns PS01155 Endonuclease III family signature. 117 146 - T 31-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 Hamap MF_00942 Endonuclease III [nth]. 16 224 37.159 T 31-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 TIGRFAM TIGR01083 nth: endonuclease III 20 209 8.5E-86 T 31-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 SUPERFAMILY SSF48150 16 226 3.14E-72 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 SMART SM00478 53 200 1.7E-53 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 Gene3D G3DSA:1.10.1670.10 26 218 2.7E-76 T 31-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 49 182 1.8E-17 T 31-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 PIRSF PIRSF001435 14 225 6.8E-48 T 31-10-2018 BRM88_12965 03fa4fe253fba669db3487b4e2cb455e 236 Gene3D G3DSA:1.10.340.30 36 147 2.7E-76 T 31-10-2018 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 31-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 Gene3D G3DSA:3.10.20.70 2 104 1.4E-37 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 Pfam PF00120 Glutamine synthetase, catalytic domain 102 466 6.9E-131 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 SUPERFAMILY SSF55931 102 467 2.55E-131 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 SMART SM01230 102 379 4.8E-138 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 467 1.4E-193 T 31-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 3.4E-29 T 31-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 SUPERFAMILY SSF54368 3 100 8.24E-36 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 31-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BRM88_23850 a89027ea264f4e0b17e838fe86bb1d5c 469 Gene3D G3DSA:3.30.590.10 105 457 5.4E-140 T 31-10-2018 BRM88_24235 42cd38e81b5562ea4c3ce6fd01d667a3 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_24235 42cd38e81b5562ea4c3ce6fd01d667a3 411 Pfam PF01610 Transposase 155 389 1.1E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 456 9.5E-109 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 Gene3D G3DSA:1.10.10.1330 107 238 7.2E-12 T 31-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 Pfam PF04552 Sigma-54, DNA binding domain 304 457 3.3E-57 T 31-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 349 368 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 Pfam PF04963 Sigma-54 factor, core binding domain 112 288 9.3E-32 T 31-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 PRINTS PR00045 Sigma-54 factor signature 361 373 4.8E-27 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 PRINTS PR00045 Sigma-54 factor signature 432 450 4.8E-27 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 PRINTS PR00045 Sigma-54 factor signature 377 388 4.8E-27 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 PRINTS PR00045 Sigma-54 factor signature 173 190 4.8E-27 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 Gene3D G3DSA:1.10.10.60 399 456 4.4E-20 T 31-10-2018 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 PIRSF PIRSF000774 1 459 9.4E-114 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 49 2.5E-12 T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_13615 20f435d1121c8301ef39d0a273fe84bf 467 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 437 444 - T 31-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BRM88_11890 57c30113814650b2d156abfbb2b1fff9 395 SUPERFAMILY SSF52540 7 124 8.06E-5 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_11890 57c30113814650b2d156abfbb2b1fff9 395 Gene3D G3DSA:3.40.50.300 1 185 1.1E-38 T 31-10-2018 BRM88_11890 57c30113814650b2d156abfbb2b1fff9 395 Pfam PF05707 Zonular occludens toxin (Zot) 3 184 6.3E-20 T 31-10-2018 IPR008900 Zona occludens toxin BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 SMART SM00382 54 257 5.9E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 SUPERFAMILY SSF52540 31 263 4.22E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 Pfam PF00005 ABC transporter 45 201 1.6E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 30 276 1.3E-115 T 31-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 ProSitePatterns PS00211 ABC transporters family signature. 173 187 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_13035 7fcbb7d70e606ff1b5960fc15290de72 276 Gene3D G3DSA:3.40.50.300 30 274 1.9E-66 T 31-10-2018 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 21 278 4.4E-100 T 31-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 SUPERFAMILY SSF51717 14 280 1.96E-100 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 56 69 - T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 22 37 - T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 Gene3D G3DSA:3.20.20.20 2 283 3.4E-111 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_15720 38312473cbd63e799dc049f8f8337fd5 300 Pfam PF00809 Pterin binding enzyme 23 263 1.7E-84 T 31-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 SUPERFAMILY SSF82171 37 228 3.79E-20 T 31-10-2018 BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 Gene3D G3DSA:2.120.10.30 134 291 6.3E-8 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 Gene3D G3DSA:2.120.10.30 17 133 1.4E-14 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 Pfam PF07676 WD40-like Beta Propeller Repeat 81 120 1.8E-11 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 Pfam PF07676 WD40-like Beta Propeller Repeat 33 69 1.7E-9 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_01980 058f2a9ef7724d04f21076083016a2e0 293 Pfam PF07676 WD40-like Beta Propeller Repeat 138 174 6.0E-6 T 31-10-2018 IPR011659 WD40-like Beta Propeller BRM88_24070 47cecee4d7c795bcd3ed5945908f6e93 157 Pfam PF07308 Protein of unknown function (DUF1456) 88 154 2.9E-24 T 31-10-2018 IPR009921 Domain of unknown function DUF1456 BRM88_24070 47cecee4d7c795bcd3ed5945908f6e93 157 Pfam PF07308 Protein of unknown function (DUF1456) 3 72 1.4E-24 T 31-10-2018 IPR009921 Domain of unknown function DUF1456 BRM88_11835 8d9c559bde03b90b77f20fc2122d1aa3 99 ProDom PD015272 DNA DNA-BINDING SINGLE-STRANDED PHAGE-RELATED HELIX-DESTABILIZING REPLICATION BINDING GPV 3D-STRUCTURE DIRECT 1 83 5.0E-4 T 31-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 BRM88_11835 8d9c559bde03b90b77f20fc2122d1aa3 99 Gene3D G3DSA:2.40.50.140 1 91 3.2E-8 T 31-10-2018 BRM88_11835 8d9c559bde03b90b77f20fc2122d1aa3 99 Pfam PF02303 Helix-destabilising protein 4 80 1.9E-6 T 31-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 BRM88_11835 8d9c559bde03b90b77f20fc2122d1aa3 99 SUPERFAMILY SSF50249 1 84 9.08E-16 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 PIRSF PIRSF000429 6 431 3.5E-101 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 SUPERFAMILY SSF53901 12 288 1.52E-53 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 Pfam PF02803 Thiolase, C-terminal domain 290 431 8.9E-32 T 31-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 14 430 9.6E-114 T 31-10-2018 IPR002155 Thiolase GO:0016747 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 SUPERFAMILY SSF53901 288 431 7.58E-31 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 Gene3D G3DSA:3.40.47.10 5 431 6.2E-102 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_21780 22567e97cafe3ec7e9a816cccb5184bb 431 Pfam PF00108 Thiolase, N-terminal domain 12 281 4.1E-53 T 31-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 63 79 1.2E-22 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 204 223 1.2E-22 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 127 139 1.2E-22 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 ProSitePatterns PS00760 Signal peptidases I lysine active site. 129 141 - T 31-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 Gene3D G3DSA:2.170.230.10 138 203 1.5E-60 T 31-10-2018 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 246 3.3E-45 T 31-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 Gene3D G3DSA:2.10.109.10 61 246 1.5E-60 T 31-10-2018 BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 SUPERFAMILY SSF51306 61 250 2.56E-61 T 31-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 Pfam PF00717 Peptidase S24-like 69 151 1.1E-21 T 31-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BRM88_09665 13a4859b9a8c1d75f96333ce50686c3b 266 ProSitePatterns PS00761 Signal peptidases I signature 3. 209 222 - T 31-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Gene3D G3DSA:2.60.40.1730 30 239 3.4E-60 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Pfam PF11838 ERAP1-like C-terminal domain 560 868 1.1E-40 T 31-10-2018 IPR024571 ERAP1-like C-terminal domain BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 SUPERFAMILY SSF55486 248 497 3.08E-71 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Gene3D G3DSA:1.25.50.20 579 890 4.5E-32 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 SUPERFAMILY SSF63737 39 238 5.75E-49 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Gene3D G3DSA:1.10.390.60 242 491 6.5E-87 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Gene3D G3DSA:2.60.40.1910 493 574 1.2E-6 T 31-10-2018 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 173 188 1.2E-23 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 337 352 1.2E-23 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 356 368 1.2E-23 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 221 236 1.2E-23 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 301 311 1.2E-23 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_04650 b49ee04e861b6369f04b9efa02fa0f27 890 Pfam PF01433 Peptidase family M1 domain 249 474 6.8E-75 T 31-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BRM88_20280 944e856e1d4e9b7876fdcc2aa8c6717d 185 Gene3D G3DSA:3.30.2310.50 2 82 5.7E-5 T 31-10-2018 BRM88_20280 944e856e1d4e9b7876fdcc2aa8c6717d 185 Pfam PF11539 Protein of unknown function (DUF3228) 3 183 5.9E-62 T 31-10-2018 IPR021610 Protein of unknown function DUF3228 BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 SUPERFAMILY SSF52540 362 553 1.0E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 Pfam PF00005 ABC transporter 366 509 1.7E-19 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 SMART SM00382 369 556 4.2E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 SUPERFAMILY SSF90123 22 316 1.07E-20 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 Gene3D G3DSA:1.20.1560.10 14 319 2.5E-14 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_15905 39e3dfc8d93823349aaa2fa624dba023 573 Gene3D G3DSA:3.40.50.300 358 569 5.4E-40 T 31-10-2018 BRM88_11640 2c5142013c8963c4f2a65c0221297d8a 289 SUPERFAMILY SSF103481 171 268 3.4E-16 T 31-10-2018 BRM88_11640 2c5142013c8963c4f2a65c0221297d8a 289 SUPERFAMILY SSF103481 30 131 1.44E-17 T 31-10-2018 BRM88_11640 2c5142013c8963c4f2a65c0221297d8a 289 Pfam PF00892 EamA-like transporter family 136 264 6.3E-18 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_11640 2c5142013c8963c4f2a65c0221297d8a 289 Pfam PF00892 EamA-like transporter family 1 127 1.1E-16 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_05010 f0c73b3e9e978fa5cad81d133680c6b5 411 Pfam PF01610 Transposase 155 389 6.0E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_05010 f0c73b3e9e978fa5cad81d133680c6b5 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 27 484 8.0E-166 T 31-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 Pfam PF00425 chorismate binding enzyme 223 476 2.0E-97 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 SUPERFAMILY SSF56322 16 484 8.5E-156 T 31-10-2018 IPR005801 ADC synthase GO:0009058 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.3E-22 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.3E-22 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.3E-22 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.3E-22 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 Gene3D G3DSA:3.60.120.10 2 490 1.8E-178 T 31-10-2018 IPR005801 ADC synthase GO:0009058 BRM88_21600 29113dc42b05a03bedfabfef73fe407f 491 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 170 3.0E-29 T 31-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_22795 d1c4ccfd3fd9b6d88f1195e80ed4e01f 311 Pfam PF07715 TonB-dependent Receptor Plug Domain 34 149 1.5E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_22795 d1c4ccfd3fd9b6d88f1195e80ed4e01f 311 SUPERFAMILY SSF56935 9 269 4.44E-32 T 31-10-2018 BRM88_22795 d1c4ccfd3fd9b6d88f1195e80ed4e01f 311 Gene3D G3DSA:2.170.130.10 14 153 1.3E-30 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 690 721 2.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 588 619 8.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 658 687 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 894 920 9.8E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 622 653 3.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 521 552 4.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 385 416 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 758 789 2.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 860 891 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 351 382 3.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 419 450 8.3E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 724 755 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 792 823 4.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 453 484 1.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 826 857 2.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 930 954 0.044 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 555 585 1.0E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 317 348 5.7E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11065 d53451f7decf8062f130036448b5bf96 1199 Pfam PF03377 TAL effector repeat 487 518 1.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_13545 a0fb6f910dbc4093c813a2180c25bf84 251 Pfam PF00460 Flagella basal body rod protein 5 35 1.4E-8 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_13545 a0fb6f910dbc4093c813a2180c25bf84 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 172 246 6.9E-22 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BRM88_13545 a0fb6f910dbc4093c813a2180c25bf84 251 SUPERFAMILY SSF117143 77 208 1.96E-14 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BRM88_13545 a0fb6f910dbc4093c813a2180c25bf84 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 121 1.1E-35 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BRM88_13545 a0fb6f910dbc4093c813a2180c25bf84 251 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 227 2.7E-55 T 31-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 BRM88_19900 269e3ece3b8fd9ab94afdb46a59c5ebe 157 Gene3D G3DSA:1.10.10.10 1 142 2.7E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_19900 269e3ece3b8fd9ab94afdb46a59c5ebe 157 SUPERFAMILY SSF46785 5 140 1.27E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_19900 269e3ece3b8fd9ab94afdb46a59c5ebe 157 SMART SM00347 28 127 2.6E-9 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_19900 269e3ece3b8fd9ab94afdb46a59c5ebe 157 Pfam PF12802 MarR family 34 91 1.6E-9 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 121 211 2.7E-18 T 31-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 SUPERFAMILY SSF52794 5 100 2.22E-15 T 31-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 120 203 2.2E-38 T 31-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 SUPERFAMILY SSF52794 118 217 2.09E-36 T 31-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 Gene3D G3DSA:3.40.50.2300 2 103 3.3E-8 T 31-10-2018 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 Gene3D G3DSA:3.40.50.2300 109 218 3.7E-40 T 31-10-2018 BRM88_14855 4c24c74c43db8c16f3228da8eca0f84e 580 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 232 572 2.6E-150 T 31-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 BRM88_00620 01a79d5dd7a012251fbef63b36ff52eb 283 SUPERFAMILY SSF58113 11 158 1.18E-5 T 31-10-2018 BRM88_00620 01a79d5dd7a012251fbef63b36ff52eb 283 Gene3D G3DSA:1.20.5.1230 9 210 2.3E-7 T 31-10-2018 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.9E-48 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 Gene3D G3DSA:1.10.1900.20 56 118 2.2E-27 T 31-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 Gene3D G3DSA:1.10.720.90 2 55 3.1E-21 T 31-10-2018 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 Pfam PF00453 Ribosomal protein L20 3 109 3.7E-47 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 1.0E-21 T 31-10-2018 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.372 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 SUPERFAMILY SSF74731 3 117 1.99E-48 T 31-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.5E-39 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.5E-39 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_17030 bf8de4dc44135e4b8e9da2423a409f00 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.5E-39 T 31-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_24195 8f83734accb0f1465a16d726c4be144f 523 SUPERFAMILY SSF56300 138 515 1.92E-44 T 31-10-2018 BRM88_24195 8f83734accb0f1465a16d726c4be144f 523 Gene3D G3DSA:3.60.21.70 157 486 3.2E-66 T 31-10-2018 IPR038607 PhoD-like superfamily BRM88_24195 8f83734accb0f1465a16d726c4be144f 523 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 44 129 3.8E-18 T 31-10-2018 IPR032093 Phospholipase D, N-terminal BRM88_24195 8f83734accb0f1465a16d726c4be144f 523 Gene3D G3DSA:2.60.40.380 40 135 1.9E-5 T 31-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 BRM88_24195 8f83734accb0f1465a16d726c4be144f 523 Pfam PF09423 PhoD-like phosphatase 159 502 2.4E-82 T 31-10-2018 IPR018946 Alkaline phosphatase D-related BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 131 142 - T 31-10-2018 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 32 251 1.9E-49 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 SUPERFAMILY SSF56534 20 291 2.49E-102 T 31-10-2018 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 26 268 1.8E-103 T 31-10-2018 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|KEGG: 00790+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 Gene3D G3DSA:1.10.800.10 6 296 1.1E-108 T 31-10-2018 IPR036951 Aromatic amino acid hydroxylase superfamily GO:0004497|GO:0005506|GO:0009072|GO:0055114 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 195 213 2.1E-13 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 88 110 2.1E-13 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BRM88_01285 96569bcfc2c06a902ae86a9a85f48b00 296 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 227 246 2.1E-13 T 31-10-2018 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 BRM88_06575 3014d7aaac2e56f0ebaf42451edb6b4e 105 Gene3D G3DSA:3.30.160.100 1 103 6.1E-29 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like BRM88_06575 3014d7aaac2e56f0ebaf42451edb6b4e 105 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 4.8E-23 T 31-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BRM88_06575 3014d7aaac2e56f0ebaf42451edb6b4e 105 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 8.3E-26 T 31-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BRM88_06575 3014d7aaac2e56f0ebaf42451edb6b4e 105 SUPERFAMILY SSF69754 1 99 3.27E-30 T 31-10-2018 IPR036567 Ribosome hibernation promotion factor-like BRM88_16940 52ceccfb14b3d1e2781b3f9277c9feeb 153 Pfam PF06172 Cupin superfamily (DUF985) 7 136 8.2E-42 T 31-10-2018 IPR009327 Cupin domain of unknown function DUF985 BRM88_16940 52ceccfb14b3d1e2781b3f9277c9feeb 153 SUPERFAMILY SSF51182 2 142 2.16E-48 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_16940 52ceccfb14b3d1e2781b3f9277c9feeb 153 Gene3D G3DSA:2.60.120.10 1 148 2.7E-45 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 Gene3D G3DSA:3.40.50.10210 56 328 6.8E-125 T 31-10-2018 BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 14 345 7.6E-133 T 31-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 SUPERFAMILY SSF52733 5 346 4.97E-113 T 31-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 Pfam PF02277 Phosphoribosyltransferase 13 345 1.1E-126 T 31-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 Gene3D G3DSA:1.10.1610.10 24 345 6.8E-125 T 31-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BRM88_06925 36aeb62b4454e001e0da3440b96aa062 348 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 12 347 36.484 T 31-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 Gene3D G3DSA:3.60.120.10 1 451 2.1E-160 T 31-10-2018 IPR005801 ADC synthase GO:0009058 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 TIGRFAM TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I 96 443 3.3E-142 T 31-10-2018 IPR010118 Para-aminobenzoate synthase/anthranilate synthase, component I BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 PRINTS PR00095 Anthranilate synthase component I signature 382 396 3.1E-18 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 PRINTS PR00095 Anthranilate synthase component I signature 288 301 3.1E-18 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 PRINTS PR00095 Anthranilate synthase component I signature 397 411 3.1E-18 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 PRINTS PR00095 Anthranilate synthase component I signature 302 315 3.1E-18 T 31-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 SUPERFAMILY SSF56322 7 449 1.31E-123 T 31-10-2018 IPR005801 ADC synthase GO:0009058 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 Pfam PF04715 Anthranilate synthase component I, N terminal region 16 143 4.0E-5 T 31-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BRM88_04465 240ecdf52f3e94549bf382b5f768880c 451 Pfam PF00425 chorismate binding enzyme 187 440 3.7E-92 T 31-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BRM88_17315 921ebb8a36f073f444be79666b086d1f 142 Pfam PF01152 Bacterial-like globin 27 139 3.3E-11 T 31-10-2018 IPR001486 Truncated hemoglobin GO:0019825 BRM88_17315 921ebb8a36f073f444be79666b086d1f 142 SUPERFAMILY SSF46458 17 141 2.04E-29 T 31-10-2018 IPR009050 Globin-like superfamily BRM88_17315 921ebb8a36f073f444be79666b086d1f 142 Gene3D G3DSA:1.10.490.10 15 142 3.4E-30 T 31-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BRM88_17315 921ebb8a36f073f444be79666b086d1f 142 PIRSF PIRSF002030 14 142 8.6E-45 T 31-10-2018 IPR016339 Truncated hemoglobin, group 1 BRM88_09330 cb55fbb2f47ce3a50b41caf42cfb0b01 355 SMART SM00636 28 342 4.0E-20 T 31-10-2018 IPR011583 Chitinase II GO:0008061 BRM88_09330 cb55fbb2f47ce3a50b41caf42cfb0b01 355 Pfam PF00704 Glycosyl hydrolases family 18 48 340 1.1E-26 T 31-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 BRM88_09330 cb55fbb2f47ce3a50b41caf42cfb0b01 355 Gene3D G3DSA:3.20.20.80 50 347 1.4E-80 T 31-10-2018 BRM88_09330 cb55fbb2f47ce3a50b41caf42cfb0b01 355 SUPERFAMILY SSF51445 46 346 5.94E-42 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09330 cb55fbb2f47ce3a50b41caf42cfb0b01 355 Gene3D G3DSA:3.10.50.10 248 313 1.4E-80 T 31-10-2018 IPR029070 Chitinase insertion domain superfamily BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:3.90.1800.10 1294 1348 6.9E-11 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 SUPERFAMILY SSF64484 13 1381 0.0 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04565 RNA polymerase Rpb2, domain 3 541 608 3.0E-29 T 31-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:3.90.1110.10 327 468 7.3E-30 T 31-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 9 1380 0.0 T 31-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04560 RNA polymerase Rpb2, domain 7 1308 1382 1.8E-26 T 31-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:2.40.270.10 1076 1284 6.9E-86 T 31-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1104 1116 - T 31-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 157 227 1.1E-7 T 31-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 449 482 4.8E-6 T 31-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04561 RNA polymerase Rpb2, domain 2 362 418 5.9E-5 T 31-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:2.40.270.10 819 861 1.5E-6 T 31-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:2.40.50.150 862 985 1.4E-43 T 31-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:3.90.1100.10 675 741 2.1E-20 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:3.90.1100.10 19 177 7.0E-55 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:3.90.1100.10 469 665 1.0E-68 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Gene3D G3DSA:2.40.50.100 742 817 5.4E-29 T 31-10-2018 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF10385 RNA polymerase beta subunit external 1 domain 619 684 6.3E-22 T 31-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 14 1383 12.252 T 31-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF00562 RNA polymerase Rpb2, domain 6 747 1306 3.8E-158 T 31-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_19160 bfe833ca9dd6742b45bc505a00d56fba 1383 Pfam PF04563 RNA polymerase beta subunit 28 527 1.5E-40 T 31-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Pfam PF02237 Biotin protein ligase C terminal domain 274 319 9.5E-5 T 31-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 SUPERFAMILY SSF50037 275 319 1.51E-6 T 31-10-2018 IPR008988 Transcriptional repressor, C-terminal BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 2 319 30.184 T 31-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Pfam PF08279 HTH domain 9 54 2.3E-10 T 31-10-2018 IPR013196 Helix-turn-helix, type 11 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Gene3D G3DSA:1.10.10.10 3 59 2.0E-13 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Gene3D G3DSA:2.30.30.100 274 321 1.7E-9 T 31-10-2018 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Gene3D G3DSA:3.30.930.10 74 272 3.5E-53 T 31-10-2018 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 SUPERFAMILY SSF55681 84 270 1.09E-46 T 31-10-2018 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 SUPERFAMILY SSF46785 5 56 9.99E-9 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 87 318 7.8E-45 T 31-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BRM88_02085 5b55e31d8d8b175b7ee97fac18b2042f 321 Pfam PF03099 Biotin/lipoate A/B protein ligase family 102 209 1.4E-8 T 31-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 Pfam PF13091 PLD-like domain 519 570 1.9E-9 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 Pfam PF13091 PLD-like domain 91 245 2.6E-18 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 Gene3D G3DSA:3.30.870.10 68 261 3.1E-39 T 31-10-2018 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 SMART SM00155 516 543 0.018 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 SMART SM00155 186 213 0.0037 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 SUPERFAMILY SSF56024 326 589 2.79E-22 T 31-10-2018 BRM88_23900 5d4a816b7cc8a9b4be501c98b9abc04a 671 SUPERFAMILY SSF56024 67 256 1.67E-37 T 31-10-2018 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 Gene3D G3DSA:3.10.430.100 61 148 1.4E-23 T 31-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 Gene3D G3DSA:3.40.5.10 1 50 7.6E-22 T 31-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 SUPERFAMILY SSF55653 61 147 1.12E-21 T 31-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 31-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 23.569 T 31-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 2.7E-41 T 31-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 SUPERFAMILY SSF55658 1 57 7.85E-18 T 31-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 1.0E-20 T 31-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_12790 084ed57cf20552bbeabbf7940859810d 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 1.0E-20 T 31-10-2018 IPR020069 Ribosomal protein L9, C-terminal BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 SMART SM00758 238 376 2.1E-27 T 31-10-2018 IPR011658 PA14 domain BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 SUPERFAMILY SSF56988 255 351 2.22E-10 T 31-10-2018 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Gene3D G3DSA:2.60.40.1180 764 840 2.7E-29 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Gene3D G3DSA:2.60.120.380 223 366 9.0E-145 T 31-10-2018 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Pfam PF17137 Domain of unknown function (DUF5110) 860 928 4.9E-20 T 31-10-2018 IPR033403 Domain of unknown function DUF5110 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Gene3D G3DSA:2.60.40.1180 841 958 1.4E-32 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Gene3D G3DSA:2.60.40.1760 43 407 9.0E-145 T 31-10-2018 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Pfam PF01055 Glycosyl hydrolases family 31 388 844 9.1E-126 T 31-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Gene3D G3DSA:3.20.20.80 408 760 3.8E-127 T 31-10-2018 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 SUPERFAMILY SSF51011 760 839 1.01E-21 T 31-10-2018 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 SUPERFAMILY SSF51445 398 754 7.37E-48 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Pfam PF16338 Domain of unknown function (DUF4968) 55 135 2.6E-13 T 31-10-2018 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 Pfam PF07691 PA14 domain 276 351 2.6E-9 T 31-10-2018 IPR011658 PA14 domain BRM88_15505 ad01fc7cee702452ba2a4957c7b055cf 967 SUPERFAMILY SSF74650 57 216 1.51E-26 T 31-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 2.0E-149 T 31-10-2018 BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 38.334 T 31-10-2018 IPR033752 MetA family BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 PIRSF PIRSF000450 1 295 5.8E-111 T 31-10-2018 IPR033752 MetA family BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 Pfam PF04204 Homoserine O-succinyltransferase 3 292 1.7E-109 T 31-10-2018 IPR033752 MetA family BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 Gene3D G3DSA:3.40.50.880 1 295 8.0E-108 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_07110 6e1342408225ea58c0fc1f30493ec7d4 311 SUPERFAMILY SSF52317 17 293 1.37E-89 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 45 219 7.4E-57 T 31-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 Gene3D G3DSA:3.90.1530.30 59 122 2.3E-26 T 31-10-2018 BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 Pfam PF02195 ParB-like nuclease domain 48 136 2.4E-27 T 31-10-2018 IPR003115 ParB/Sulfiredoxin BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 SUPERFAMILY SSF110849 45 180 2.09E-33 T 31-10-2018 IPR036086 ParB/Sulfiredoxin superfamily BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 Gene3D G3DSA:1.10.10.2830 123 235 2.9E-34 T 31-10-2018 BRM88_02530 12ebbf9bf5f8c323b7edf8292bbc8f27 309 SMART SM00470 46 136 3.0E-36 T 31-10-2018 IPR003115 ParB/Sulfiredoxin BRM88_21070 c1ecbf020c0b1942192ff9cfc8a07652 331 Gene3D G3DSA:3.40.1350.80 154 318 1.8E-45 T 31-10-2018 BRM88_21070 c1ecbf020c0b1942192ff9cfc8a07652 331 Pfam PF06616 BsuBI/PstI restriction endonuclease C-terminus 23 317 5.7E-75 T 31-10-2018 IPR009528 Restriction endonuclease, type II, BsuBI/PstI, C-terminal GO:0000287|GO:0003677|GO:0009036|GO:0009307 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 7 271 1.3E-81 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 SUPERFAMILY SSF53790 5 225 2.36E-78 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 6 227 37.275 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 PIRSF PIRSF005917 1 273 2.9E-97 T 31-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 Gene3D G3DSA:3.40.1010.10 1 113 7.8E-42 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 206 4.1E-31 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 Gene3D G3DSA:3.30.950.10 114 233 2.2E-41 T 31-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BRM88_20465 e02c9d017ac6b757ed536d0301bb8480 273 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 84 95 - T 31-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 BRM88_20090 cf2cf413053e03ada7f6b6ec4a30d723 217 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 39 199 1.0E-18 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain BRM88_20090 cf2cf413053e03ada7f6b6ec4a30d723 217 Gene3D G3DSA:3.40.50.1110 36 217 5.7E-62 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_20090 cf2cf413053e03ada7f6b6ec4a30d723 217 SUPERFAMILY SSF52266 37 215 2.9E-45 T 31-10-2018 BRM88_12700 07674675e21b96252d2b26f335d49687 245 SMART SM00866 98 235 1.2E-23 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_12700 07674675e21b96252d2b26f335d49687 245 Gene3D G3DSA:3.40.1410.10 96 231 1.1E-25 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_12700 07674675e21b96252d2b26f335d49687 245 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 11 242 9.0E-94 T 31-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 BRM88_12700 07674675e21b96252d2b26f335d49687 245 Pfam PF07702 UTRA domain 99 234 9.8E-26 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_12700 07674675e21b96252d2b26f335d49687 245 SUPERFAMILY SSF64288 63 240 3.61E-31 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_12700 07674675e21b96252d2b26f335d49687 245 SUPERFAMILY SSF46785 7 79 1.98E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_12700 07674675e21b96252d2b26f335d49687 245 Gene3D G3DSA:1.10.10.10 8 80 2.6E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12700 07674675e21b96252d2b26f335d49687 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.3E-5 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_12700 07674675e21b96252d2b26f335d49687 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.3E-5 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_12700 07674675e21b96252d2b26f335d49687 245 SMART SM00345 16 75 1.0E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_12700 07674675e21b96252d2b26f335d49687 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 6.4E-19 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 131 141 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 Pfam PF01227 GTP cyclohydrolase I 26 203 4.1E-71 T 31-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 Gene3D G3DSA:1.10.286.10 9 70 7.0E-19 T 31-10-2018 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 83 99 - T 31-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 SUPERFAMILY SSF55620 16 204 7.41E-74 T 31-10-2018 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 26 203 1.5E-64 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 21 204 38.308 T 31-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BRM88_24445 9df9106ec2c7050d7563597dd6109119 209 Gene3D G3DSA:3.30.1130.10 73 206 2.6E-51 T 31-10-2018 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Pfam PF03853 YjeF-related protein N-terminus 30 187 5.8E-40 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 PIRSF PIRSF017184 5 492 1.9E-128 T 31-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Gene3D G3DSA:3.40.1190.20 219 491 6.3E-80 T 31-10-2018 IPR029056 Ribokinase-like BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 12 209 2.9E-41 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 SUPERFAMILY SSF64153 7 245 8.11E-58 T 31-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 9 209 23.396 T 31-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 223 488 3.4E-72 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 314 324 - T 31-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 SUPERFAMILY SSF53613 225 488 7.7E-71 T 31-10-2018 IPR029056 Ribokinase-like BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Pfam PF01256 Carbohydrate kinase 247 485 4.5E-59 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 224 494 21.907 T 31-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BRM88_14405 cc5e60585539c4ad3b970f3c0ad5e3c5 495 Gene3D G3DSA:3.40.50.10260 5 215 5.2E-55 T 31-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 SUPERFAMILY SSF53448 561 792 3.42E-28 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 Gene3D G3DSA:3.40.50.2000 1015 1154 6.6E-7 T 31-10-2018 BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 Gene3D G3DSA:3.90.550.10 563 797 1.5E-25 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 Gene3D G3DSA:3.90.550.10 3 252 2.9E-26 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 Pfam PF00535 Glycosyl transferase family 2 586 754 1.8E-11 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 Pfam PF00535 Glycosyl transferase family 2 16 137 4.5E-17 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 SUPERFAMILY SSF53448 14 240 3.85E-34 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13675 430499d690d897382d6cdbb1f46a2b4f 1183 SUPERFAMILY SSF53756 899 1164 9.42E-9 T 31-10-2018 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 1.2E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 1.2E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 1.2E-13 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 Pfam PF00561 alpha/beta hydrolase fold 35 298 1.5E-31 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 7.8E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.8E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 7.8E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 Gene3D G3DSA:3.40.50.1820 1 313 4.3E-116 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 SUPERFAMILY SSF53474 3 310 1.76E-66 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 PIRSF PIRSF006431 1 313 4.1E-139 T 31-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BRM88_19430 028fd6ca9b10d1fe799f0724f2a225f4 313 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 311 1.1E-151 T 31-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 Gene3D G3DSA:1.10.275.10 34 232 1.7E-100 T 31-10-2018 IPR024083 Fumarase/histidase, N-terminal BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 ProSitePatterns PS00163 Fumarate lyases signature. 279 288 - T 31-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00145 Argininosuccinate lyase family signature 145 165 1.4E-30 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00145 Argininosuccinate lyase family signature 196 212 1.4E-30 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00145 Argininosuccinate lyase family signature 279 295 1.4E-30 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00145 Argininosuccinate lyase family signature 313 332 1.4E-30 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00145 Argininosuccinate lyase family signature 104 126 1.4E-30 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 Gene3D G3DSA:1.20.200.10 122 362 1.7E-100 T 31-10-2018 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 Pfam PF00206 Lyase 34 302 5.5E-46 T 31-10-2018 IPR022761 Fumarate lyase, N-terminal BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00149 Fumarate lyase superfamily signature 150 168 2.0E-13 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00149 Fumarate lyase superfamily signature 105 123 2.0E-13 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 PRINTS PR00149 Fumarate lyase superfamily signature 279 295 2.0E-13 T 31-10-2018 IPR000362 Fumarate lyase family BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 Hamap MF_00006 Argininosuccinate lyase [argH]. 4 429 29.628 T 31-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 SUPERFAMILY SSF48557 25 402 2.36E-86 T 31-10-2018 IPR008948 L-Aspartase-like GO:0003824 BRM88_14060 305987c7d72b5faa55dbaa5a04b20f37 431 Gene3D G3DSA:1.10.40.30 363 397 1.7E-100 T 31-10-2018 BRM88_03165 3880926906f8fcd543aba9b607471885 221 Pfam PF11445 Protein of unknown function (DUF2894) 12 193 9.0E-61 T 31-10-2018 IPR021549 Protein of unknown function DUF2894 BRM88_01085 eabfed1cb445c1d31413622b3cd902f3 562 Pfam PF11394 Protein of unknown function (DUF2875) 106 550 1.6E-170 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 BRM88_05350 6a46ae3b4b9694779b52537e74da77fb 249 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 10 243 38.309 T 31-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 BRM88_05350 6a46ae3b4b9694779b52537e74da77fb 249 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 40 241 1.4E-66 T 31-10-2018 BRM88_05350 6a46ae3b4b9694779b52537e74da77fb 249 SUPERFAMILY SSF56112 46 200 7.42E-16 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_05350 6a46ae3b4b9694779b52537e74da77fb 249 Gene3D G3DSA:1.10.510.10 152 246 1.1E-7 T 31-10-2018 BRM88_03640 0ec11769a2c25f0bb9014d29ee35eaf0 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.507 T 31-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BRM88_03640 0ec11769a2c25f0bb9014d29ee35eaf0 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 1.1E-39 T 31-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 BRM88_03640 0ec11769a2c25f0bb9014d29ee35eaf0 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 1.5E-28 T 31-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BRM88_03640 0ec11769a2c25f0bb9014d29ee35eaf0 156 Gene3D G3DSA:1.20.5.620 62 122 1.3E-11 T 31-10-2018 BRM88_03640 0ec11769a2c25f0bb9014d29ee35eaf0 156 SUPERFAMILY SSF81573 62 121 1.57E-12 T 31-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily BRM88_16135 40b94cbbc5c1851746b27bb6b5b5308a 192 SUPERFAMILY SSF46689 6 63 6.48E-5 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16135 40b94cbbc5c1851746b27bb6b5b5308a 192 Gene3D G3DSA:1.10.357.10 2 186 4.4E-22 T 31-10-2018 BRM88_18865 63310ffe5320322fd4542cb214187d53 85 Pfam PF03776 Septum formation topological specificity factor MinE 13 80 3.9E-21 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BRM88_18865 63310ffe5320322fd4542cb214187d53 85 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 81 3.0E-27 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BRM88_18865 63310ffe5320322fd4542cb214187d53 85 SUPERFAMILY SSF55229 31 82 1.1E-13 T 31-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 BRM88_18865 63310ffe5320322fd4542cb214187d53 85 Gene3D G3DSA:3.30.1070.10 1 81 4.2E-25 T 31-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 BRM88_18865 63310ffe5320322fd4542cb214187d53 85 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 82 17.262 T 31-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BRM88_02485 9209da67c0fc7a958fd65ff3cd47bf68 225 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 31-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site BRM88_02485 9209da67c0fc7a958fd65ff3cd47bf68 225 Gene3D G3DSA:3.40.140.10 101 224 3.3E-40 T 31-10-2018 BRM88_02485 9209da67c0fc7a958fd65ff3cd47bf68 225 SUPERFAMILY SSF47781 16 90 3.56E-6 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_02485 9209da67c0fc7a958fd65ff3cd47bf68 225 Pfam PF04002 RadC-like JAB domain 104 222 9.5E-42 T 31-10-2018 IPR025657 RadC-like JAB domain BRM88_02485 9209da67c0fc7a958fd65ff3cd47bf68 225 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 9.7E-66 T 31-10-2018 IPR001405 Uncharacterised protein family UPF0758 BRM88_02835 02680b562ea16271db07bccb596eb27a 135 TIGRFAM TIGR02436 TIGR02436: four helix bundle protein 19 122 1.4E-27 T 31-10-2018 IPR012657 23S rRNA-intervening sequence protein BRM88_02835 02680b562ea16271db07bccb596eb27a 135 Pfam PF05635 23S rRNA-intervening sequence protein 15 96 2.2E-27 T 31-10-2018 IPR012657 23S rRNA-intervening sequence protein BRM88_02835 02680b562ea16271db07bccb596eb27a 135 SUPERFAMILY SSF158446 13 122 4.45E-27 T 31-10-2018 IPR036583 23S rRNA-intervening sequence superfamily BRM88_02835 02680b562ea16271db07bccb596eb27a 135 Gene3D G3DSA:1.20.1440.60 5 127 6.9E-37 T 31-10-2018 IPR036583 23S rRNA-intervening sequence superfamily BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 5.7E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 5.7E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 5.7E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 5.7E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 5.7E-28 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 31-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 SUPERFAMILY SSF54719 88 201 5.37E-46 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 Gene3D G3DSA:1.10.287.990 20 89 9.1E-30 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 Gene3D G3DSA:2.40.500.20 90 203 3.0E-47 T 31-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 2.4E-34 T 31-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 1.3E-39 T 31-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 PIRSF PIRSF000349 1 203 1.8E-82 T 31-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_14275 50e4f6ccd017298832711c00edd3fd9a 203 SUPERFAMILY SSF46609 1 90 1.23E-37 T 31-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BRM88_10625 a3f8e35665f94c7b55a3e6428b745526 197 SUPERFAMILY SSF102405 1 179 2.75E-61 T 31-10-2018 BRM88_10625 a3f8e35665f94c7b55a3e6428b745526 197 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 179 4.5E-58 T 31-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG BRM88_10625 a3f8e35665f94c7b55a3e6428b745526 197 Pfam PF03641 Possible lysine decarboxylase 46 168 9.2E-39 T 31-10-2018 IPR031100 LOG family BRM88_10625 a3f8e35665f94c7b55a3e6428b745526 197 Gene3D G3DSA:3.40.50.450 1 195 8.6E-75 T 31-10-2018 BRM88_07325 601a61491ad369db7d12ff4321926983 155 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 14 145 1.6E-30 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BRM88_07325 601a61491ad369db7d12ff4321926983 155 Pfam PF03652 Holliday junction resolvase 12 146 4.9E-37 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BRM88_07325 601a61491ad369db7d12ff4321926983 155 SUPERFAMILY SSF53098 11 146 1.97E-32 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_07325 601a61491ad369db7d12ff4321926983 155 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 11 149 22.161 T 31-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BRM88_07325 601a61491ad369db7d12ff4321926983 155 Gene3D G3DSA:3.30.420.140 9 147 6.6E-37 T 31-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BRM88_07325 601a61491ad369db7d12ff4321926983 155 SMART SM00732 11 111 1.2E-28 T 31-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BRM88_12675 39bf2ee51b2299ecbce855a649d4f452 218 Pfam PF01794 Ferric reductase like transmembrane component 53 167 5.4E-19 T 31-10-2018 IPR013130 Ferric reductase transmembrane component-like domain BRM88_12675 39bf2ee51b2299ecbce855a649d4f452 218 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 6 206 22.382 T 31-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 BRM88_03050 724e98c2e7b1ad26e1964cf95f02d1c3 304 PIRSF PIRSF026649 1 295 1.0E-75 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BRM88_03050 724e98c2e7b1ad26e1964cf95f02d1c3 304 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 12 284 2.0E-45 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BRM88_06695 bb8562ebfcbc6e989a7c5b3c25d5432d 497 Gene3D G3DSA:3.40.630.10 1 226 1.4E-53 T 31-10-2018 BRM88_06695 bb8562ebfcbc6e989a7c5b3c25d5432d 497 Gene3D G3DSA:3.40.630.10 350 473 5.7E-21 T 31-10-2018 BRM88_06695 bb8562ebfcbc6e989a7c5b3c25d5432d 497 Pfam PF07687 Peptidase dimerisation domain 207 367 9.1E-14 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain BRM88_06695 bb8562ebfcbc6e989a7c5b3c25d5432d 497 Pfam PF01546 Peptidase family M20/M25/M40 95 466 5.4E-21 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 BRM88_06695 bb8562ebfcbc6e989a7c5b3c25d5432d 497 SUPERFAMILY SSF53187 11 468 1.97E-47 T 31-10-2018 BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 SUPERFAMILY SSF53383 5 364 4.13E-70 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 Pfam PF00266 Aminotransferase class-V 20 269 3.0E-26 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 370 134.132 T 31-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 PIRSF PIRSF000524 1 379 3.7E-58 T 31-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 Gene3D G3DSA:3.90.1150.10 9 353 1.7E-87 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_07135 dea24eb13cfb38a0efd4f04b8e4ee60d 384 Gene3D G3DSA:3.40.640.10 17 261 1.7E-87 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_10005 28dc40174ca6c3a155501a56cddd45b8 260 Gene3D G3DSA:1.20.120.1630 79 256 1.2E-15 T 31-10-2018 BRM88_10005 28dc40174ca6c3a155501a56cddd45b8 260 Pfam PF06966 Protein of unknown function (DUF1295) 21 250 3.0E-77 T 31-10-2018 IPR010721 Protein of unknown function DUF1295 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 17 227 7.0E-58 T 31-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PIRSF PIRSF002764 7 231 5.2E-77 T 31-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 Pfam PF03379 CcmB protein 16 228 5.4E-62 T 31-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 87 110 7.0E-48 T 31-10-2018 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 64 81 7.0E-48 T 31-10-2018 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 167 186 7.0E-48 T 31-10-2018 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 38 59 7.0E-48 T 31-10-2018 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 112 130 7.0E-48 T 31-10-2018 BRM88_11225 8efce18999686c5bbc8495bf0729f8ea 231 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 204 227 7.0E-48 T 31-10-2018 BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 Gene3D G3DSA:3.60.10.10 1 255 3.0E-71 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 31-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 SUPERFAMILY SSF56219 1 254 2.36E-74 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 253 1.5E-79 T 31-10-2018 BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 247 1.2E-23 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 254 9.3E-74 T 31-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BRM88_24175 c00678a7f8344bf4af05ca3bab02ab6d 259 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 211 222 - T 31-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 BRM88_23610 6f6755b97b64b28271e3bb11a368ee30 366 Pfam PF00563 EAL domain 120 347 1.5E-63 T 31-10-2018 IPR001633 EAL domain BRM88_23610 6f6755b97b64b28271e3bb11a368ee30 366 Gene3D G3DSA:3.20.20.450 115 361 2.7E-84 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_23610 6f6755b97b64b28271e3bb11a368ee30 366 SUPERFAMILY SSF141868 120 360 1.09E-75 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_23610 6f6755b97b64b28271e3bb11a368ee30 366 SMART SM00052 109 353 2.0E-92 T 31-10-2018 IPR001633 EAL domain BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 428 4.2E-33 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 296 3.4E-39 T 31-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 PIRSF PIRSF500134 1 446 1.9E-191 T 31-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 424 8.4E-143 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Gene3D G3DSA:1.20.5.100 203 234 3.7E-19 T 31-10-2018 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Gene3D G3DSA:3.40.50.720 235 449 5.3E-77 T 31-10-2018 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 SUPERFAMILY SSF52413 316 439 2.35E-39 T 31-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 SMART SM00984 324 428 7.0E-53 T 31-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 186 1.6E-70 T 31-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 SUPERFAMILY SSF51735 1 194 8.83E-60 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 Gene3D G3DSA:3.40.50.720 1 202 1.1E-82 T 31-10-2018 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 PIRSF PIRSF000124 1 443 7.4E-155 T 31-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BRM88_10755 a5f77f7d33b2917d23ccb860a811ff5f 449 SUPERFAMILY SSF48179 204 298 8.28E-34 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Pfam PF00128 Alpha amylase, catalytic domain 265 346 2.3E-9 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Gene3D G3DSA:2.60.40.10 7 220 2.8E-69 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 123 206 1.5E-22 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 SMART SM00642 250 618 8.8E-7 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 107 723 1.8E-275 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 627 724 2.0E-23 T 31-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 PIRSF PIRSF000463 10 726 3.1E-288 T 31-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Gene3D G3DSA:3.20.20.80 223 621 7.0E-161 T 31-10-2018 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 SUPERFAMILY SSF81296 18 111 6.77E-17 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 99 726 44.656 T 31-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 SUPERFAMILY SSF51011 622 725 2.88E-33 T 31-10-2018 BRM88_00930 22e5df44493b777442e6da12c20777a9 727 Gene3D G3DSA:2.60.40.1180 622 726 2.6E-36 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_00930 22e5df44493b777442e6da12c20777a9 727 SUPERFAMILY SSF51445 168 615 2.26E-113 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_04965 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF01610 Transposase 155 389 6.0E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_04965 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_05490 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF01610 Transposase 155 389 6.0E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_05490 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_17760 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF01610 Transposase 155 389 6.0E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_17760 543b2a2b6f03dc4d959eef03994bff6c 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 141 161 - T 31-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 Gene3D G3DSA:3.50.50.60 123 249 1.2E-122 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 13 35 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 134 146 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 67 77 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 149 173 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 204 220 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 243 264 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 46 61 1.2E-73 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 SUPERFAMILY SSF51905 5 318 1.85E-54 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 13 318 6.7E-117 T 31-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 302 1.7E-47 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 1.6E-37 T 31-10-2018 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 1.6E-37 T 31-10-2018 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 1.6E-37 T 31-10-2018 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.6E-37 T 31-10-2018 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 1.6E-37 T 31-10-2018 BRM88_13420 8afec9cbdbe7ec03a548e3bac5029d74 322 Gene3D G3DSA:3.50.50.60 15 317 1.2E-122 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 SMART SM00729 23 243 2.1E-4 T 31-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 14 343 38.985 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 29 40 - T 31-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 Gene3D G3DSA:3.20.20.70 11 343 1.4E-83 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 SUPERFAMILY SSF102114 13 291 8.76E-69 T 31-10-2018 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 Pfam PF13353 4Fe-4S single cluster domain 31 117 9.5E-6 T 31-10-2018 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 14 343 5.6E-104 T 31-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 Pfam PF04055 Radical SAM superfamily 28 190 3.9E-25 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_05360 3ecc4782d4126fd445c81212e8614938 343 Pfam PF06463 Molybdenum Cofactor Synthesis C 200 322 3.6E-33 T 31-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_14120 615dcb15f2f164213f7dc115b3826d31 353 Pfam PF03572 Peptidase family S41 164 306 9.6E-18 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_14120 615dcb15f2f164213f7dc115b3826d31 353 Gene3D G3DSA:3.90.226.10 104 315 6.8E-65 T 31-10-2018 BRM88_14120 615dcb15f2f164213f7dc115b3826d31 353 SMART SM00245 121 307 3.7E-9 T 31-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BRM88_14120 615dcb15f2f164213f7dc115b3826d31 353 Gene3D G3DSA:3.30.750.44 39 282 6.8E-65 T 31-10-2018 BRM88_14120 615dcb15f2f164213f7dc115b3826d31 353 SUPERFAMILY SSF52096 53 321 2.32E-52 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_12930 8a9d25b0c1c3dc4216fc9c1ad71021ce 191 SMART SM00644 20 162 2.4E-18 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_12930 8a9d25b0c1c3dc4216fc9c1ad71021ce 191 SUPERFAMILY SSF55846 26 186 1.14E-33 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_12930 8a9d25b0c1c3dc4216fc9c1ad71021ce 191 Gene3D G3DSA:3.40.80.10 16 188 1.3E-30 T 31-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_12930 8a9d25b0c1c3dc4216fc9c1ad71021ce 191 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 28 173 5.6E-22 T 31-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 Pfam PF01431 Peptidase family M13 479 682 1.4E-69 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 SUPERFAMILY SSF55486 44 685 3.48E-203 T 31-10-2018 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 Gene3D G3DSA:3.40.390.10 46 685 3.9E-222 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 Pfam PF05649 Peptidase family M13 52 426 7.6E-92 T 31-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 510 526 4.9E-21 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 471 483 4.9E-21 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 489 501 4.9E-21 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 581 592 4.9E-21 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_07610 6887d5576c9b731fe1bfd297cde98a95 685 Gene3D G3DSA:1.10.1380.10 77 466 3.9E-222 T 31-10-2018 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 Gene3D G3DSA:1.10.150.240 18 84 1.8E-56 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 Gene3D G3DSA:3.40.50.1000 7 201 1.8E-56 T 31-10-2018 IPR023214 HAD superfamily BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 50 182 2.5E-18 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 SUPERFAMILY SSF56784 3 218 6.35E-49 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 145 165 5.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 5.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 5.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 127 143 5.5E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_07430 3cb0a51c0d3b31bce7365bbfd1771d7e 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 182 8.1E-25 T 31-10-2018 BRM88_17655 2ce1457def3af585620fc51e8c0318cd 1306 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 10 1286 0.0 T 31-10-2018 IPR011836 Conserved hypothetical protein CHP02099 BRM88_17655 2ce1457def3af585620fc51e8c0318cd 1306 Pfam PF13116 Protein of unknown function 509 780 3.2E-41 T 31-10-2018 IPR025263 Domain of unknown function DUF3971 BRM88_17655 2ce1457def3af585620fc51e8c0318cd 1306 Pfam PF13502 AsmA-like C-terminal region 1034 1275 3.4E-58 T 31-10-2018 IPR032712 AsmA-like, C-terminal BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 259 3.6E-89 T 31-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 358 4.2E-130 T 31-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 SUPERFAMILY SSF103025 3 281 4.24E-94 T 31-10-2018 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Gene3D G3DSA:4.10.1250.10 237 280 2.8E-20 T 31-10-2018 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Gene3D G3DSA:3.30.1360.120 7 236 5.7E-83 T 31-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Gene3D G3DSA:2.40.30.110 282 369 1.4E-27 T 31-10-2018 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 PIRSF PIRSF006487 1 364 7.1E-85 T 31-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 SUPERFAMILY SSF101790 274 361 6.38E-22 T 31-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 266 353 1.0E-18 T 31-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Gene3D G3DSA:3.30.70.1400 51 138 5.7E-83 T 31-10-2018 BRM88_09395 d7469333ecdd6a9ab83658ca1f42f81c 369 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 45.285 T 31-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BRM88_24480 9c7325f4a75609ae87a190ca845cffc5 404 SMART SM00155 130 157 0.0035 T 31-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BRM88_24480 9c7325f4a75609ae87a190ca845cffc5 404 Pfam PF13091 PLD-like domain 59 184 1.0E-23 T 31-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BRM88_24480 9c7325f4a75609ae87a190ca845cffc5 404 SUPERFAMILY SSF56024 28 201 1.65E-31 T 31-10-2018 BRM88_24480 9c7325f4a75609ae87a190ca845cffc5 404 Gene3D G3DSA:3.30.870.10 45 194 1.5E-24 T 31-10-2018 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 Gene3D G3DSA:3.40.190.10 59 330 4.6E-129 T 31-10-2018 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 Pfam PF13531 Bacterial extracellular solute-binding protein 73 314 5.8E-43 T 31-10-2018 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 179 187 - T 31-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 46 361 1.4E-148 T 31-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 SUPERFAMILY SSF53850 56 361 3.22E-83 T 31-10-2018 BRM88_19705 846b9e7eb0d51c1d0b757f5a2976b976 365 Gene3D G3DSA:3.40.190.10 148 360 4.6E-129 T 31-10-2018 BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 SUPERFAMILY SSF53474 529 781 1.61E-60 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 Gene3D G3DSA:2.140.10.30 226 524 3.5E-24 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 Gene3D G3DSA:2.140.10.30 20 166 9.6E-6 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 Pfam PF00326 Prolyl oligopeptidase family 589 783 2.7E-42 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 Gene3D G3DSA:3.40.50.1820 535 784 7.0E-63 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 336 497 4.9E-15 T 31-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BRM88_22975 4a2a346870c942e12206ea0619a02da1 786 SUPERFAMILY SSF82171 42 528 8.76E-38 T 31-10-2018 BRM88_12945 0dcc459c8674cb431e56fc782149cbef 255 Gene3D G3DSA:3.90.79.10 78 250 2.0E-47 T 31-10-2018 BRM88_12945 0dcc459c8674cb431e56fc782149cbef 255 Pfam PF00293 NUDIX domain 101 202 2.4E-12 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_12945 0dcc459c8674cb431e56fc782149cbef 255 SUPERFAMILY SSF55811 96 247 7.04E-32 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_12945 0dcc459c8674cb431e56fc782149cbef 255 Pfam PF06945 Protein of unknown function (DUF1289) 3 44 1.6E-17 T 31-10-2018 IPR010710 Protein of unknown function DUF1289 BRM88_21165 b0d923c052fad91065c871080c57a1b5 331 Pfam PF05954 Phage late control gene D protein (GPD) 37 168 5.6E-39 T 31-10-2018 BRM88_21165 b0d923c052fad91065c871080c57a1b5 331 Gene3D G3DSA:3.55.50.10 106 169 6.3E-46 T 31-10-2018 BRM88_21165 b0d923c052fad91065c871080c57a1b5 331 SUPERFAMILY SSF69279 20 169 8.5E-43 T 31-10-2018 BRM88_21165 b0d923c052fad91065c871080c57a1b5 331 Gene3D G3DSA:2.30.110.50 27 105 6.3E-46 T 31-10-2018 BRM88_21165 b0d923c052fad91065c871080c57a1b5 331 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 168 213 1.6E-12 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 31-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 Gene3D G3DSA:1.10.287.80 6 283 7.3E-108 T 31-10-2018 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 PRINTS PR00126 ATP synthase gamma subunit signature 74 93 6.2E-38 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 PRINTS PR00126 ATP synthase gamma subunit signature 167 184 6.2E-38 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 6.2E-38 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 6.2E-38 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 2.9E-105 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 Gene3D G3DSA:3.40.1380.10 61 206 7.3E-108 T 31-10-2018 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 SUPERFAMILY SSF52943 3 287 2.09E-93 T 31-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 Pfam PF00231 ATP synthase 5 286 1.6E-96 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03655 91bc9ff91fc6f5fbe5723b83ee2d44d6 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.605 T 31-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_09470 19bb7511f184e3cdc898610173bfa728 348 SUPERFAMILY SSF53448 16 278 2.57E-33 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_09470 19bb7511f184e3cdc898610173bfa728 348 Pfam PF00535 Glycosyl transferase family 2 17 174 2.3E-24 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_09470 19bb7511f184e3cdc898610173bfa728 348 Gene3D G3DSA:3.90.550.10 11 220 3.2E-26 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_06410 583361b0279b87508726a4a9ddbd54ce 388 SUPERFAMILY SSF56059 1 385 2.15E-81 T 31-10-2018 BRM88_06410 583361b0279b87508726a4a9ddbd54ce 388 SUPERFAMILY SSF52440 175 280 6.33E-36 T 31-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BRM88_06410 583361b0279b87508726a4a9ddbd54ce 388 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 386 2.4E-145 T 31-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BRM88_06410 583361b0279b87508726a4a9ddbd54ce 388 Gene3D G3DSA:3.30.1490.330 265 345 7.0E-22 T 31-10-2018 BRM88_09105 caa08c2b8cb521bf6c12b29b2ef4a006 291 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 204 272 1.5E-15 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_09105 caa08c2b8cb521bf6c12b29b2ef4a006 291 SUPERFAMILY SSF74653 178 285 1.22E-20 T 31-10-2018 BRM88_09105 caa08c2b8cb521bf6c12b29b2ef4a006 291 Gene3D G3DSA:3.30.1150.10 83 281 1.7E-18 T 31-10-2018 BRM88_09105 caa08c2b8cb521bf6c12b29b2ef4a006 291 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 206 281 3.3E-18 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_18885 74b6bc5b6653b74f5f274541a285310b 577 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 71 202 2.5E-16 T 31-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BRM88_07635 8a4d4a34c2b7c3f9e93353e2d8dc4bd9 171 Gene3D G3DSA:2.30.30.40 21 150 2.2E-36 T 31-10-2018 BRM88_07635 8a4d4a34c2b7c3f9e93353e2d8dc4bd9 171 Pfam PF01584 CheW-like domain 19 157 1.4E-32 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_07635 8a4d4a34c2b7c3f9e93353e2d8dc4bd9 171 SUPERFAMILY SSF50341 11 158 2.49E-36 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_07635 8a4d4a34c2b7c3f9e93353e2d8dc4bd9 171 SMART SM00260 15 156 7.9E-28 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_07635 8a4d4a34c2b7c3f9e93353e2d8dc4bd9 171 Gene3D G3DSA:2.40.50.180 38 151 2.2E-36 T 31-10-2018 BRM88_09150 c34f57cc373af430294609ae7a0557e2 207 SUPERFAMILY SSF55729 12 181 2.13E-36 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_09150 c34f57cc373af430294609ae7a0557e2 207 Pfam PF13302 Acetyltransferase (GNAT) domain 71 157 5.6E-15 T 31-10-2018 IPR000182 GNAT domain BRM88_09150 c34f57cc373af430294609ae7a0557e2 207 Gene3D G3DSA:3.40.630.30 11 184 4.3E-37 T 31-10-2018 BRM88_09085 b3dea2d8c0f8427dbb03ecbdf5b37bdf 174 SUPERFAMILY SSF48452 75 160 5.38E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_09085 b3dea2d8c0f8427dbb03ecbdf5b37bdf 174 Gene3D G3DSA:1.25.40.10 71 164 4.7E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SUPERFAMILY SSF48452 382 551 1.01E-25 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SMART SM00028 517 550 1.5 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SMART SM00028 449 483 140.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SMART SM00028 381 414 240.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SMART SM00028 415 448 3.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SMART SM00028 177 210 46.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 Gene3D G3DSA:1.25.40.10 383 559 1.5E-26 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 Pfam PF13429 Tetratricopeptide repeat 276 539 2.1E-7 T 31-10-2018 BRM88_19260 36086df9c92a2597e5da8532b5469daa 562 SUPERFAMILY SSF48452 176 365 2.1E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 SMART SM00487 20 224 1.7E-59 T 31-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 Gene3D G3DSA:3.40.50.300 1 212 3.7E-79 T 31-10-2018 BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 Pfam PF00270 DEAD/DEAH box helicase 25 198 2.8E-49 T 31-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 31-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 Pfam PF00271 Helicase conserved C-terminal domain 233 341 4.0E-29 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 Gene3D G3DSA:3.40.50.300 215 375 4.9E-47 T 31-10-2018 BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 SUPERFAMILY SSF52540 75 361 9.0E-74 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03845 c6064861c57357e05d96aeef6a3ef3c5 460 SMART SM00490 260 341 2.1E-31 T 31-10-2018 IPR001650 Helicase, C-terminal BRM88_09790 8cbf1b3cee41feef959c2df1f4fbd563 196 Pfam PF04519 Polymer-forming cytoskeletal 66 161 1.5E-22 T 31-10-2018 IPR007607 Bactofilin A/B BRM88_07075 35d05f92dd07bfb59f99ce3342034698 774 SUPERFAMILY SSF48452 462 536 2.07E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_07075 35d05f92dd07bfb59f99ce3342034698 774 SUPERFAMILY SSF48452 68 535 2.85E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_07075 35d05f92dd07bfb59f99ce3342034698 774 Gene3D G3DSA:1.25.40.10 380 564 2.1E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_07075 35d05f92dd07bfb59f99ce3342034698 774 Gene3D G3DSA:1.25.40.10 31 297 4.6E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_16660 e1bb7ff1f316041d99fc7c7a65411815 197 Gene3D G3DSA:2.170.130.10 1 38 5.5E-13 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_16660 e1bb7ff1f316041d99fc7c7a65411815 197 Pfam PF07715 TonB-dependent Receptor Plug Domain 1 28 3.7E-7 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_16660 e1bb7ff1f316041d99fc7c7a65411815 197 SUPERFAMILY SSF56935 1 97 7.78E-18 T 31-10-2018 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 SUPERFAMILY SSF53822 64 344 1.1E-63 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 SUPERFAMILY SSF47413 2 59 4.93E-17 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 Pfam PF13377 Periplasmic binding protein-like domain 173 339 6.3E-35 T 31-10-2018 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 Gene3D G3DSA:3.40.50.2300 57 311 8.1E-66 T 31-10-2018 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 15 25 5.6E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 5 15 5.6E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 50 4.4E-18 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 Gene3D G3DSA:3.40.50.2300 165 294 8.1E-66 T 31-10-2018 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 Gene3D G3DSA:1.10.260.40 1 56 1.6E-22 T 31-10-2018 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 SMART SM00354 3 73 3.9E-25 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_20910 18410dc9f1096c4394bf2f05f3ef7bc8 358 ProSitePatterns PS00356 LacI-type HTH domain signature. 6 24 - T 31-10-2018 BRM88_04570 0d4564136b1289dd4740d6fe3b7d3058 315 Pfam PF16387 Domain of unknown function 216 308 2.9E-14 T 31-10-2018 IPR032160 Domain of unknown function DUF4996 BRM88_04570 0d4564136b1289dd4740d6fe3b7d3058 315 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 47 166 3.2E-22 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BRM88_04570 0d4564136b1289dd4740d6fe3b7d3058 315 SUPERFAMILY SSF51695 43 309 1.54E-45 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_04570 0d4564136b1289dd4740d6fe3b7d3058 315 Gene3D G3DSA:3.20.20.190 27 314 5.6E-74 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 SMART SM00450 12 108 7.3E-11 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 SUPERFAMILY SSF52821 8 111 1.44E-22 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 Gene3D G3DSA:3.40.50.720 118 369 5.1E-93 T 31-10-2018 BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 Pfam PF00899 ThiF family 125 362 2.4E-71 T 31-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 SUPERFAMILY SSF69572 120 368 5.62E-96 T 31-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 Pfam PF00581 Rhodanese-like domain 23 104 1.2E-7 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_13245 d72d15c33af95694e9420f1ac247750a 385 Gene3D G3DSA:3.40.250.10 3 111 1.2E-19 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 PIRSF PIRSF002888 3 327 3.1E-91 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 Gene3D G3DSA:3.40.1550.10 44 231 1.1E-54 T 31-10-2018 IPR028976 CheC-like superfamily BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 251 318 4.0E-19 T 31-10-2018 IPR001543 Surface presentation of antigen (SpoA) BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 318 1.7E-103 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 Gene3D G3DSA:2.30.330.10 247 320 2.1E-5 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 SUPERFAMILY SSF101801 249 321 5.23E-15 T 31-10-2018 IPR036429 SpoA-like superfamily BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 Pfam PF02154 Flagellar motor switch protein FliM 38 230 2.6E-72 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 SUPERFAMILY SSF103039 5 231 3.14E-19 T 31-10-2018 IPR028976 CheC-like superfamily BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 1.1E-24 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 1.1E-24 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 1.1E-24 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_13725 30215b3f866f321ea7f336e3eac93157 337 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 1.1E-24 T 31-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 153 177 5.3E-7 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 210 229 5.3E-7 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 190 209 5.3E-7 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 PRINTS PR00164 ABC-2 type transport system membrane protein signature 41 62 5.3E-7 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 Pfam PF01061 ABC-2 type transporter 21 232 2.1E-30 T 31-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 BRM88_03955 0303f242ebe5a4fe3500ce95e5a3d381 272 PIRSF PIRSF006648 4 266 2.1E-16 T 31-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BRM88_20725 5cf795cb6d6ecaf5dd3fb98e415735d8 216 Gene3D G3DSA:3.40.30.10 24 214 4.7E-53 T 31-10-2018 BRM88_20725 5cf795cb6d6ecaf5dd3fb98e415735d8 216 ProSitePatterns PS00194 Thioredoxin family active site. 52 70 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_20725 5cf795cb6d6ecaf5dd3fb98e415735d8 216 Pfam PF13462 Thioredoxin 49 199 7.6E-11 T 31-10-2018 IPR012336 Thioredoxin-like fold BRM88_20725 5cf795cb6d6ecaf5dd3fb98e415735d8 216 PIRSF PIRSF001488 6 211 2.9E-33 T 31-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL BRM88_20725 5cf795cb6d6ecaf5dd3fb98e415735d8 216 SUPERFAMILY SSF52833 27 206 1.77E-40 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_22100 b82071199b1df87af3389a60b62acc45 291 Pfam PF00510 Cytochrome c oxidase subunit III 150 290 8.9E-45 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22100 b82071199b1df87af3389a60b62acc45 291 Pfam PF00510 Cytochrome c oxidase subunit III 10 112 4.7E-16 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22100 b82071199b1df87af3389a60b62acc45 291 Gene3D G3DSA:1.10.287.70 2 74 3.7E-22 T 31-10-2018 BRM88_22100 b82071199b1df87af3389a60b62acc45 291 SUPERFAMILY SSF81452 9 291 2.72E-83 T 31-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22100 b82071199b1df87af3389a60b62acc45 291 Gene3D G3DSA:1.20.120.80 75 291 3.2E-67 T 31-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 SUPERFAMILY SSF54593 21 172 1.25E-32 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 ProSitePatterns PS00934 Glyoxalase I signature 1. 26 47 - T 31-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 Gene3D G3DSA:3.10.180.10 5 171 8.2E-58 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 24 167 8.4E-23 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 17 171 4.4E-43 T 31-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BRM88_03755 6d74fe31b9a0c892cda1886a86169838 174 ProSitePatterns PS00935 Glyoxalase I signature 2. 111 127 - T 31-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 1.4E-28 T 31-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Pfam PF14450 Cell division protein FtsA 11 195 4.7E-11 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Gene3D G3DSA:3.30.1490.110 87 170 2.4E-121 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 SMART SM00842 10 197 1.1E-103 T 31-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 SUPERFAMILY SSF53067 200 378 1.35E-45 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Gene3D G3DSA:3.30.420.40 198 353 2.4E-121 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 SUPERFAMILY SSF53067 9 198 1.88E-60 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 378 2.8E-160 T 31-10-2018 IPR020823 Cell division protein FtsA BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Gene3D G3DSA:3.30.420.40 13 371 2.4E-121 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 PIRSF PIRSF003101 1 411 3.4E-150 T 31-10-2018 IPR020823 Cell division protein FtsA BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 411 30.624 T 31-10-2018 IPR020823 Cell division protein FtsA BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Pfam PF14450 Cell division protein FtsA 208 375 5.4E-24 T 31-10-2018 BRM88_20385 39f8df064becedc18d4d09bfbcebfe05 411 Gene3D G3DSA:3.90.640.10 236 301 2.4E-121 T 31-10-2018 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 4.5E-94 T 31-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 355 372 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 398 417 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 627 640 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 2.2E-48 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 Pfam PF01578 Cytochrome C assembly protein 89 295 1.3E-51 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 636 3.8E-221 T 31-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BRM88_11205 557ef4f94d94beaf882e9babd49bfbfc 645 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 315 634 2.1E-115 T 31-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BRM88_13810 e129ca380514af0b10086726e37775c4 552 SUPERFAMILY SSF55874 234 417 4.45E-40 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13810 e129ca380514af0b10086726e37775c4 552 SUPERFAMILY SSF50341 418 547 3.92E-31 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SMART SM01231 171 231 2.8E-16 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Gene3D G3DSA:2.40.50.180 442 503 1.3E-33 T 31-10-2018 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Pfam PF01627 Hpt domain 9 105 8.2E-16 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SUPERFAMILY SSF47226 7 125 2.62E-28 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SMART SM00260 411 548 5.3E-30 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_13810 e129ca380514af0b10086726e37775c4 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 4.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13810 e129ca380514af0b10086726e37775c4 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 373 4.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13810 e129ca380514af0b10086726e37775c4 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 321 335 4.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13810 e129ca380514af0b10086726e37775c4 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 4.9E-14 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 418 1.5E-18 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13810 e129ca380514af0b10086726e37775c4 552 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 172 230 1.1E-11 T 31-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SMART SM00387 276 419 7.9E-26 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_13810 e129ca380514af0b10086726e37775c4 552 Pfam PF01584 CheW-like domain 425 547 3.0E-26 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SUPERFAMILY SSF47384 172 232 4.32E-13 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Gene3D G3DSA:2.30.30.40 419 544 1.3E-33 T 31-10-2018 BRM88_13810 e129ca380514af0b10086726e37775c4 552 SMART SM00073 5 102 1.1E-15 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Gene3D G3DSA:3.30.565.10 232 418 1.2E-57 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13810 e129ca380514af0b10086726e37775c4 552 Gene3D G3DSA:1.20.120.160 5 143 3.9E-31 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_13810 e129ca380514af0b10086726e37775c4 552 Gene3D G3DSA:1.10.287.560 171 231 2.6E-17 T 31-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 Gene3D G3DSA:1.10.10.10 96 187 3.0E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 Pfam PF08281 Sigma-70, region 4 128 181 1.4E-11 T 31-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 Gene3D G3DSA:1.10.1740.10 11 95 6.1E-31 T 31-10-2018 BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 SUPERFAMILY SSF88946 7 106 2.9E-25 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 SUPERFAMILY SSF88659 114 186 1.31E-12 T 31-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 185 2.2E-29 T 31-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BRM88_10040 9996ebbd6ad69a2b101a59b283c1f89d 187 Pfam PF04542 Sigma-70 region 2 30 97 3.1E-16 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_05535 f0366b06bb985eaaf34508e47142966f 258 SUPERFAMILY SSF88713 66 252 4.7E-49 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BRM88_05535 f0366b06bb985eaaf34508e47142966f 258 Pfam PF01522 Polysaccharide deacetylase 75 193 3.8E-30 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BRM88_05535 f0366b06bb985eaaf34508e47142966f 258 Gene3D G3DSA:3.20.20.370 62 255 6.6E-47 T 31-10-2018 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 Pfam PF01817 Chorismate mutase type II 37 105 3.0E-8 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 SUPERFAMILY SSF48600 37 188 5.8E-40 T 31-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 SMART SM00830 29 107 3.6E-15 T 31-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 PIRSF PIRSF026640 4 189 4.9E-67 T 31-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 Gene3D G3DSA:1.20.1250.110 26 189 6.4E-56 T 31-10-2018 BRM88_03670 2c6b1815c5dbccee95ffd7eda1e8ef54 189 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 31 143 4.3E-39 T 31-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 Gene3D G3DSA:3.40.50.200 62 370 2.8E-48 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 PRINTS PR00723 Subtilisin serine protease family (S8) signature 309 325 5.1E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 PRINTS PR00723 Subtilisin serine protease family (S8) signature 89 108 5.1E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 PRINTS PR00723 Subtilisin serine protease family (S8) signature 131 144 5.1E-6 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 SUPERFAMILY SSF52743 77 373 4.06E-48 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 SMART SM00869 642 900 3.0E-27 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 Pfam PF03797 Autotransporter beta-domain 646 889 6.3E-28 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 Pfam PF00082 Subtilase family 89 360 6.6E-39 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 467 911 2.6E-5 T 31-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 SUPERFAMILY SSF103515 638 911 3.14E-28 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 Pfam PF12951 Passenger-associated-transport-repeat 400 429 3.7E-9 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 399 429 5.1E-11 T 31-10-2018 IPR013425 Autotransporter-associated beta strand repeat BRM88_12580 f22e24910392e27943351f1bf514f7fe 911 Gene3D G3DSA:2.40.128.130 625 911 2.3E-39 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 PRINTS PR00481 Cytosol aminopeptidase signature 241 262 5.8E-43 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 PRINTS PR00481 Cytosol aminopeptidase signature 278 299 5.8E-43 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 PRINTS PR00481 Cytosol aminopeptidase signature 300 320 5.8E-43 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 PRINTS PR00481 Cytosol aminopeptidase signature 219 236 5.8E-43 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 PRINTS PR00481 Cytosol aminopeptidase signature 328 343 5.8E-43 T 31-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 304 311 - T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 SUPERFAMILY SSF53187 139 453 1.35E-105 T 31-10-2018 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 Gene3D G3DSA:3.40.630.10 132 454 6.8E-122 T 31-10-2018 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 Gene3D G3DSA:3.40.220.10 6 131 4.1E-25 T 31-10-2018 BRM88_02220 64459c7a2bb195c754c4efac8c61c7a0 456 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 146 430 9.3E-104 T 31-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BRM88_18810 6fd2c03ad8a0d6de38fb4943b3f99e7b 59 Pfam PF03869 Arc-like DNA binding domain 2 48 2.5E-4 T 31-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 BRM88_18810 6fd2c03ad8a0d6de38fb4943b3f99e7b 59 SUPERFAMILY SSF47598 1 54 1.45E-10 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BRM88_18810 6fd2c03ad8a0d6de38fb4943b3f99e7b 59 Gene3D G3DSA:1.10.1220.10 1 49 6.3E-9 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BRM88_10590 1c2072f11b09d2cf39d15659e3ec9c42 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.7E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_10590 1c2072f11b09d2cf39d15659e3ec9c42 439 SUPERFAMILY SSF53098 18 403 9.86E-27 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_10525 891295ab20fce9ac5eee94221d9a3c97 91 Gene3D G3DSA:3.10.20.280 1 80 5.2E-20 T 31-10-2018 IPR037021 RnfH superfamily BRM88_10525 891295ab20fce9ac5eee94221d9a3c97 91 SUPERFAMILY SSF54285 1 70 3.36E-15 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BRM88_10525 891295ab20fce9ac5eee94221d9a3c97 91 Pfam PF03658 RnfH family Ubiquitin 1 78 2.0E-19 T 31-10-2018 IPR005346 RnfH protein BRM88_10525 891295ab20fce9ac5eee94221d9a3c97 91 Hamap MF_00460 Protein RnfH [rnfH]. 1 86 18.769 T 31-10-2018 IPR005346 RnfH protein BRM88_07590 f2189f51ff200ba84775f2472eada179 237 Pfam PF04493 Endonuclease V 24 218 2.0E-68 T 31-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BRM88_07590 f2189f51ff200ba84775f2472eada179 237 Hamap MF_00801 Endonuclease V [nfi]. 14 227 34.809 T 31-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BRM88_07590 f2189f51ff200ba84775f2472eada179 237 Gene3D G3DSA:3.30.2170.10 5 230 3.2E-73 T 31-10-2018 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 45.883 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 SUPERFAMILY SSF54211 3 125 2.28E-42 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_20375 d752041f3032810049080d9fc0854a8d 303 Gene3D G3DSA:3.30.1700.10 128 302 2.1E-64 T 31-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 5.2E-105 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 294 7.8E-118 T 31-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 Gene3D G3DSA:3.30.230.20 1 127 1.2E-48 T 31-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BRM88_20375 d752041f3032810049080d9fc0854a8d 303 SUPERFAMILY SSF54211 133 277 9.86E-51 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_04605 d673412f17d029b75839dc1dc81f0c6b 186 Gene3D G3DSA:1.20.1260.10 26 183 4.2E-48 T 31-10-2018 IPR012347 Ferritin-like BRM88_04605 d673412f17d029b75839dc1dc81f0c6b 186 Pfam PF00210 Ferritin-like domain 48 179 1.2E-24 T 31-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BRM88_04605 d673412f17d029b75839dc1dc81f0c6b 186 PIRSF PIRSF018063 19 186 2.5E-59 T 31-10-2018 IPR014490 DNA-binding protein from starved cells-like BRM88_04605 d673412f17d029b75839dc1dc81f0c6b 186 SUPERFAMILY SSF47240 38 179 7.09E-34 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 Pfam PF01336 OB-fold nucleic acid binding domain 70 145 2.2E-14 T 31-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 2.0E-199 T 31-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 20 504 44.02 T 31-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 SUPERFAMILY SSF50249 13 155 8.78E-38 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 Gene3D G3DSA:3.30.930.10 155 499 4.0E-132 T 31-10-2018 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 SUPERFAMILY SSF55681 162 502 3.83E-118 T 31-10-2018 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 163 501 1.5E-82 T 31-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 2.8E-39 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 2.8E-39 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 2.8E-39 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 2.8E-39 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 2.8E-39 T 31-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BRM88_15310 710fa4e9c662b86bd9fe8fb9949e6fe6 505 Gene3D G3DSA:2.40.50.140 14 154 8.8E-37 T 31-10-2018 BRM88_21765 5e5026c7e2b631ef7162124b34b45d25 126 PIRSF PIRSF034961 1 114 2.5E-44 T 31-10-2018 IPR014593 Uncharacterised conserved protein UCP034961, SH3-2 BRM88_21765 5e5026c7e2b631ef7162124b34b45d25 126 Pfam PF07653 Variant SH3 domain 2 57 4.8E-6 T 31-10-2018 IPR001452 SH3 domain GO:0005515 BRM88_21765 5e5026c7e2b631ef7162124b34b45d25 126 SUPERFAMILY SSF50044 62 123 3.28E-7 T 31-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 40 483 37.816 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 Pfam PF00342 Phosphoglucose isomerase 47 487 2.9E-150 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 Gene3D G3DSA:3.40.50.10490 92 269 2.4E-167 T 31-10-2018 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 SUPERFAMILY SSF53697 2 496 8.9E-154 T 31-10-2018 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 456 473 - T 31-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 316 337 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 424 442 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 456 469 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 134 153 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 239 257 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 PRINTS PR00662 Glucose-6-phosphate isomerase signature 442 456 7.0E-46 T 31-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 Gene3D G3DSA:3.40.50.10490 8 465 2.4E-167 T 31-10-2018 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 Gene3D G3DSA:1.10.1390.10 466 504 4.0E-13 T 31-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_12515 f4e1472b3b1c82ef9577cbb7eeaa9fd4 504 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 243 256 - T 31-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06930 03f536932a105bc43a51e8ee5e998ddf 196 SUPERFAMILY SSF53254 3 180 6.0E-44 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_06930 03f536932a105bc43a51e8ee5e998ddf 196 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 179 2.3E-40 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_06930 03f536932a105bc43a51e8ee5e998ddf 196 Gene3D G3DSA:3.40.50.1240 2 183 8.7E-42 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_06930 03f536932a105bc43a51e8ee5e998ddf 196 SMART SM00855 4 152 1.7E-11 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_22255 e1a3f116f8c0c69dae4e207ebe6157b1 570 SUPERFAMILY SSF48452 335 410 1.39E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_22255 e1a3f116f8c0c69dae4e207ebe6157b1 570 Gene3D G3DSA:1.25.40.10 338 542 3.7E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 186 3.7E-56 T 31-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 Gene3D G3DSA:3.30.420.10 1 181 1.3E-50 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 SMART SM00479 2 175 1.2E-42 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 2 234 9.8E-92 T 31-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 SUPERFAMILY SSF53098 1 176 1.48E-49 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_05240 f49248d5c372979a2b3dbc813cacfeeb 244 Pfam PF00929 Exonuclease 4 166 9.0E-32 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_03965 f83d1b54e627f1daa546fd89017c2e46 248 PIRSF PIRSF000090 1 248 5.2E-82 T 31-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 BRM88_03965 f83d1b54e627f1daa546fd89017c2e46 248 Pfam PF01012 Electron transfer flavoprotein domain 26 206 1.4E-42 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BRM88_03965 f83d1b54e627f1daa546fd89017c2e46 248 Gene3D G3DSA:3.40.50.620 1 248 4.9E-82 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_03965 f83d1b54e627f1daa546fd89017c2e46 248 SMART SM00893 23 211 3.5E-56 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BRM88_03965 f83d1b54e627f1daa546fd89017c2e46 248 SUPERFAMILY SSF52402 1 244 8.37E-78 T 31-10-2018 BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 SMART SM00530 15 69 1.7E-8 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 PIRSF PIRSF019251 6 457 1.8E-153 T 31-10-2018 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 Gene3D G3DSA:1.10.260.40 2 74 1.1E-13 T 31-10-2018 BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 Pfam PF06114 IrrE N-terminal-like domain 191 312 4.9E-21 T 31-10-2018 IPR010359 IrrE N-terminal-like domain BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 313 454 1.1E-60 T 31-10-2018 IPR018653 Domain of unknown function DUF2083,transcriptional regulator BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 Pfam PF13560 Helix-turn-helix domain 11 57 9.7E-12 T 31-10-2018 BRM88_09605 f3db9ab56709259f6ca0c235058608b7 461 SUPERFAMILY SSF47413 7 64 2.82E-12 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_09045 bd87a61dfe8ab5efc59ca2af2aa6e115 92 Gene3D G3DSA:1.10.10.1150 1 92 1.9E-36 T 31-10-2018 BRM88_09045 bd87a61dfe8ab5efc59ca2af2aa6e115 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 4 92 22.003 T 31-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 BRM88_09045 bd87a61dfe8ab5efc59ca2af2aa6e115 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 90 2.1E-14 T 31-10-2018 IPR008792 Coenzyme PQQ synthesis D BRM88_09045 bd87a61dfe8ab5efc59ca2af2aa6e115 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 10 90 4.6E-31 T 31-10-2018 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 BRM88_10240 08637f8d2975c17a91e5a2bf959907b9 246 Pfam PF01351 Ribonuclease HII 38 216 3.0E-37 T 31-10-2018 IPR024567 Ribonuclease HII/HIII domain BRM88_10240 08637f8d2975c17a91e5a2bf959907b9 246 SUPERFAMILY SSF53098 33 224 5.61E-66 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_10240 08637f8d2975c17a91e5a2bf959907b9 246 Gene3D G3DSA:3.30.420.10 20 239 8.5E-72 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_10240 08637f8d2975c17a91e5a2bf959907b9 246 Hamap MF_00052_B Ribonuclease HII [rnhB]. 36 217 36.799 T 31-10-2018 IPR022898 Ribonuclease HII GO:0004523 BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 Pfam PF00226 DnaJ domain 46 109 2.6E-13 T 31-10-2018 IPR001623 DnaJ domain BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 PRINTS PR00625 DnaJ domain signature 88 108 3.4E-10 T 31-10-2018 IPR001623 DnaJ domain BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 PRINTS PR00625 DnaJ domain signature 66 81 3.4E-10 T 31-10-2018 IPR001623 DnaJ domain BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 PRINTS PR00625 DnaJ domain signature 48 66 3.4E-10 T 31-10-2018 IPR001623 DnaJ domain BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 SMART SM00271 45 108 2.7E-15 T 31-10-2018 IPR001623 DnaJ domain BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 Gene3D G3DSA:1.10.287.110 38 109 3.2E-16 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_21620 7b6e9b4ef721533792cc090dd67684bf 109 SUPERFAMILY SSF46565 14 109 2.62E-21 T 31-10-2018 IPR036869 Chaperone J-domain superfamily BRM88_05960 81d2fea11ef977875aacd80dd9bc9bce 335 Gene3D G3DSA:3.40.50.410 98 298 1.7E-53 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BRM88_05960 81d2fea11ef977875aacd80dd9bc9bce 335 Pfam PF00092 von Willebrand factor type A domain 101 291 5.1E-26 T 31-10-2018 IPR002035 von Willebrand factor, type A BRM88_05960 81d2fea11ef977875aacd80dd9bc9bce 335 SMART SM00327 98 298 1.7E-23 T 31-10-2018 IPR002035 von Willebrand factor, type A BRM88_05960 81d2fea11ef977875aacd80dd9bc9bce 335 SUPERFAMILY SSF53300 96 294 2.08E-36 T 31-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 Gene3D G3DSA:3.30.1370.30 2 74 1.8E-25 T 31-10-2018 BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 SUPERFAMILY SSF56047 2 131 4.58E-43 T 31-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 Gene3D G3DSA:3.30.1490.10 76 131 4.4E-22 T 31-10-2018 BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 Pfam PF00410 Ribosomal protein S8 5 131 4.8E-46 T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19045 fe7638cdf8b399e6c2d55f46bd1df812 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 30.198 T 31-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 342 373 44.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 211 243 0.21 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 263 294 480.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 167 198 0.29 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 300 332 34.0 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 77 108 2.8E-4 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SMART SM00564 126 158 0.015 T 31-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 SUPERFAMILY SSF50998 43 396 2.26E-78 T 31-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 Gene3D G3DSA:2.130.10.10 34 405 1.2E-94 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 9 403 2.0E-131 T 31-10-2018 IPR017687 Outer membrane protein assembly factor BamB BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 Pfam PF13360 PQQ-like domain 120 331 7.9E-44 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 Pfam PF13360 PQQ-like domain 59 113 1.2E-4 T 31-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BRM88_13325 daf10af0c10bf571d5bcfdfbbb1c0da9 406 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 6 404 38.611 T 31-10-2018 IPR017687 Outer membrane protein assembly factor BamB BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 Gene3D G3DSA:2.20.200.10 111 383 1.0E-109 T 31-10-2018 BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 Gene3D G3DSA:1.20.1600.10 64 495 1.0E-109 T 31-10-2018 BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 SUPERFAMILY SSF56954 7 496 1.57E-94 T 31-10-2018 BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 18 494 4.9E-82 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 Pfam PF02321 Outer membrane efflux protein 316 492 1.6E-24 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_14675 dcb4698b2f6bc79a4be1d4e964f3ff5a 503 Pfam PF02321 Outer membrane efflux protein 74 283 3.2E-27 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_04765 f74de2c07788397a3c6162d356956f76 374 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 38 300 1.2E-71 T 31-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BRM88_04765 f74de2c07788397a3c6162d356956f76 374 Gene3D G3DSA:3.40.50.1100 26 312 2.4E-90 T 31-10-2018 BRM88_04765 f74de2c07788397a3c6162d356956f76 374 SUPERFAMILY SSF53686 22 315 1.11E-78 T 31-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BRM88_04765 f74de2c07788397a3c6162d356956f76 374 Gene3D G3DSA:3.40.50.1100 63 159 2.4E-90 T 31-10-2018 BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 SMART SM00450 165 284 2.4E-11 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 SMART SM00450 11 141 1.4E-17 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 SUPERFAMILY SSF52821 160 289 2.88E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 Gene3D G3DSA:3.40.250.10 2 155 5.4E-43 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 Gene3D G3DSA:3.40.250.10 169 289 1.1E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 SUPERFAMILY SSF52821 5 151 3.54E-38 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 Pfam PF00581 Rhodanese-like domain 14 137 3.2E-16 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_12940 96d97f214ace07f8c47a4e2dbe28026d 290 Pfam PF00581 Rhodanese-like domain 167 279 1.5E-8 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 SUPERFAMILY SSF47413 5 63 2.63E-16 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 Gene3D G3DSA:1.10.260.40 5 59 1.4E-21 T 31-10-2018 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 2.4E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 2.4E-5 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 SMART SM00354 5 75 8.9E-25 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 1.6E-14 T 31-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 Pfam PF13377 Periplasmic binding protein-like domain 172 333 3.2E-36 T 31-10-2018 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 31-10-2018 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 Gene3D G3DSA:3.40.50.2300 164 292 4.0E-75 T 31-10-2018 BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 SUPERFAMILY SSF53822 64 335 4.17E-68 T 31-10-2018 IPR028082 Periplasmic binding protein-like I BRM88_11285 ba14023413b9a2ee53fa91ab5d26fc4f 340 Gene3D G3DSA:3.40.50.2300 60 308 4.0E-75 T 31-10-2018 BRM88_02525 f71fd3cebd100b7d45943c4d06d553f7 102 Pfam PF11731 Pathogenicity locus 8 91 6.2E-29 T 31-10-2018 IPR021725 Pathogenicity locus BRM88_02525 f71fd3cebd100b7d45943c4d06d553f7 102 Gene3D G3DSA:1.10.150.20 10 97 1.3E-5 T 31-10-2018 BRM88_19685 33b23d82986b4ed36da4f8bc95ab448e 237 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 1 237 1.4E-69 T 31-10-2018 IPR010239 Conserved hypothetical protein CHP02001 BRM88_19685 33b23d82986b4ed36da4f8bc95ab448e 237 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 29 217 3.3E-30 T 31-10-2018 IPR010239 Conserved hypothetical protein CHP02001 BRM88_03835 2ee6ca376213781bbcbeed922c9a70d2 117 Gene3D G3DSA:3.30.479.10 1 117 6.8E-47 T 31-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 BRM88_03835 2ee6ca376213781bbcbeed922c9a70d2 117 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 94 1.0E-32 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BRM88_03835 2ee6ca376213781bbcbeed922c9a70d2 117 PIRSF PIRSF006113 1 117 2.1E-48 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BRM88_03835 2ee6ca376213781bbcbeed922c9a70d2 117 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 116 2.9E-35 T 31-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BRM88_03835 2ee6ca376213781bbcbeed922c9a70d2 117 SUPERFAMILY SSF55620 3 117 1.61E-39 T 31-10-2018 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 Gene3D G3DSA:3.40.50.300 351 605 1.2E-87 T 31-10-2018 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 Gene3D G3DSA:1.20.1560.10 14 345 9.6E-28 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 Pfam PF00664 ABC transporter transmembrane region 41 304 6.9E-15 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 SMART SM00382 386 577 6.2E-20 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 SUPERFAMILY SSF52540 350 601 6.09E-85 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 SUPERFAMILY SSF90123 21 347 1.03E-50 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 Pfam PF00005 ABC transporter 379 531 2.0E-33 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_08090 8c382b623e907c4e07a225aaa780e3fb 610 ProSitePatterns PS00211 ABC transporters family signature. 503 517 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_14085 4715898d426a93b121b54f36f817bb93 150 Pfam PF13508 Acetyltransferase (GNAT) domain 58 126 1.0E-9 T 31-10-2018 IPR000182 GNAT domain BRM88_14085 4715898d426a93b121b54f36f817bb93 150 SUPERFAMILY SSF55729 17 126 7.15E-18 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_14085 4715898d426a93b121b54f36f817bb93 150 Gene3D G3DSA:3.40.630.30 4 136 2.6E-38 T 31-10-2018 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 SMART SM00968 521 619 6.8E-5 T 31-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1150 3.0E-67 T 31-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1159 23.191 T 31-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 PIRSF PIRSF005719 1 1165 1.5E-265 T 31-10-2018 IPR024704 Structural maintenance of chromosomes protein BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 SUPERFAMILY SSF52540 1 1159 1.08E-51 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1157 0.0 T 31-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 Gene3D G3DSA:3.40.50.300 1 219 3.3E-52 T 31-10-2018 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 Gene3D G3DSA:3.40.50.300 1005 1166 6.8E-45 T 31-10-2018 BRM88_12785 83435e8ccb86024a8e56942fb5ef6055 1167 SUPERFAMILY SSF75553 485 668 1.83E-9 T 31-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 BRM88_13140 b21651b36319b48e52b5839fed7cb103 235 SUPERFAMILY SSF53448 27 227 7.69E-15 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13140 b21651b36319b48e52b5839fed7cb103 235 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 38 102 1.0E-7 T 31-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif BRM88_13140 b21651b36319b48e52b5839fed7cb103 235 Gene3D G3DSA:3.90.550.20 50 175 6.9E-11 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 535 553 - T 31-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 ProSitePatterns PS00324 Aspartokinase signature. 12 20 - T 31-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 664 677 2.3E-22 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 535 553 2.3E-22 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 843 856 2.3E-22 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 742 761 2.3E-22 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 555 567 2.3E-22 T 31-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 SUPERFAMILY SSF53633 9 305 6.05E-57 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:3.40.1160.10 12 303 6.5E-72 T 31-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:3.30.70.260 317 459 7.0E-35 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 517 752 1.3E-40 T 31-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:2.40.37.10 504 862 1.2E-95 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 SUPERFAMILY SSF50621 732 864 3.14E-40 T 31-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:3.30.70.260 323 395 7.0E-35 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 753 843 1.2E-21 T 31-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 SUPERFAMILY SSF51419 506 754 7.27E-55 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 10 460 1.2E-82 T 31-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 695 711 - T 31-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:1.20.120.1320 52 141 6.5E-72 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 504 861 3.3E-91 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Gene3D G3DSA:3.20.20.10 514 756 1.2E-95 T 31-10-2018 IPR029066 PLP-binding barrel BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 SUPERFAMILY SSF55021 389 460 1.22E-9 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 SUPERFAMILY SSF55021 313 405 7.1E-12 T 31-10-2018 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 770 788 1.8E-12 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 639 648 1.8E-12 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 553 570 1.8E-12 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PRINTS PR01181 Diaminopimelate decarboxylase signature 853 869 1.8E-12 T 31-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 Pfam PF00696 Amino acid kinase family 10 291 1.3E-39 T 31-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BRM88_07360 a3fd28ba43a47a1ff0d108dbda473c31 869 PIRSF PIRSF036459 1 869 0.0 T 31-10-2018 IPR011246 Bifunctional diaminopimelate decarboxylase/aspartate kinase BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 Gene3D G3DSA:2.40.420.20 272 340 1.4E-74 T 31-10-2018 BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 SUPERFAMILY SSF111369 52 267 4.45E-42 T 31-10-2018 BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 Gene3D G3DSA:1.10.287.470 96 155 1.4E-74 T 31-10-2018 BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 341 6.1E-78 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 Gene3D G3DSA:2.40.50.100 61 189 1.4E-74 T 31-10-2018 BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 54 261 7.8E-32 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_18045 ad2150e21dccd183000208f946b4c51d 356 Gene3D G3DSA:2.40.30.170 50 271 1.4E-74 T 31-10-2018 BRM88_09650 1ed9f10efd718802830ed12fa94939a1 299 SUPERFAMILY SSF89069 17 84 2.09E-14 T 31-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 BRM88_09650 1ed9f10efd718802830ed12fa94939a1 299 Gene3D G3DSA:1.10.10.880 17 84 1.5E-14 T 31-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 BRM88_09650 1ed9f10efd718802830ed12fa94939a1 299 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 18 93 1.4E-15 T 31-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 BRM88_23915 bd1d396d7ee7fd77d469225fd197210b 210 PIRSF PIRSF009320 1 207 4.7E-28 T 31-10-2018 BRM88_23915 bd1d396d7ee7fd77d469225fd197210b 210 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 158 3.1E-17 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BRM88_23915 bd1d396d7ee7fd77d469225fd197210b 210 Gene3D G3DSA:3.40.50.300 4 210 1.1E-39 T 31-10-2018 BRM88_23915 bd1d396d7ee7fd77d469225fd197210b 210 SUPERFAMILY SSF52540 1 208 8.24E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 PRINTS PR00084 Mannitol dehydrogenase signature 247 262 2.4E-15 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 PRINTS PR00084 Mannitol dehydrogenase signature 178 191 2.4E-15 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 PRINTS PR00084 Mannitol dehydrogenase signature 217 230 2.4E-15 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 PRINTS PR00084 Mannitol dehydrogenase signature 32 42 2.4E-15 T 31-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 SUPERFAMILY SSF51735 7 279 7.09E-90 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 31 187 1.2E-36 T 31-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 SUPERFAMILY SSF48179 282 481 4.42E-52 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 Gene3D G3DSA:1.10.1040.10 281 487 1.4E-60 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 Gene3D G3DSA:3.40.50.720 4 280 3.6E-104 T 31-10-2018 BRM88_23515 aedb405a0c5ef75bedb51bb3f6894e54 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 215 453 1.7E-62 T 31-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 SUPERFAMILY SSF53067 59 173 2.27E-8 T 31-10-2018 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 8 351 2.0E-140 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 PIRSF PIRSF019169 1 352 3.9E-129 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 Gene3D G3DSA:3.30.1490.300 87 146 3.6E-86 T 31-10-2018 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 Gene3D G3DSA:3.30.420.40 188 315 3.6E-86 T 31-10-2018 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 Gene3D G3DSA:3.30.420.40 12 349 3.6E-86 T 31-10-2018 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 SUPERFAMILY SSF53067 190 350 2.01E-24 T 31-10-2018 BRM88_05900 45bb36ff9f84bef1869baea889ad3668 352 Pfam PF11104 Type IV pilus assembly protein PilM; 13 351 2.2E-134 T 31-10-2018 IPR005883 Type IV pilus assembly protein PilM BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 Gene3D G3DSA:3.10.20.70 2 113 9.8E-9 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 SUPERFAMILY SSF54368 3 111 8.76E-18 T 31-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 Gene3D G3DSA:3.30.590.10 115 449 1.3E-95 T 31-10-2018 BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 SMART SM01230 112 367 1.1E-97 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 SUPERFAMILY SSF55931 114 448 1.28E-99 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_07105 2748b29ab5f83b7d5dc97bc06deb4964 450 Pfam PF00120 Glutamine synthetase, catalytic domain 113 443 2.3E-97 T 31-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BRM88_03330 3636fbbc6469f545a9e29c63160d774a 272 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 240 1.0E-45 T 31-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 BRM88_03330 3636fbbc6469f545a9e29c63160d774a 272 Gene3D G3DSA:3.40.830.10 1 261 4.1E-87 T 31-10-2018 BRM88_03330 3636fbbc6469f545a9e29c63160d774a 272 SUPERFAMILY SSF53213 3 261 3.92E-88 T 31-10-2018 BRM88_03330 3636fbbc6469f545a9e29c63160d774a 272 PIRSF PIRSF006157 1 262 8.1E-87 T 31-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 SUPERFAMILY SSF46785 12 79 4.1E-15 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 Gene3D G3DSA:3.30.450.40 83 254 1.1E-27 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 Gene3D G3DSA:1.10.10.10 9 80 1.4E-16 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 Pfam PF09339 IclR helix-turn-helix domain 12 62 9.1E-13 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 SMART SM00346 10 99 1.4E-14 T 31-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 Pfam PF01614 Bacterial transcriptional regulator 131 245 2.5E-9 T 31-10-2018 IPR014757 Transcription regulator IclR, C-terminal BRM88_01640 1f06fcb05d80cfcca7647559e928672a 258 SUPERFAMILY SSF55781 74 250 3.86E-32 T 31-10-2018 BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 102 7.3E-23 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 SUPERFAMILY SSF50104 3 99 2.41E-29 T 31-10-2018 IPR008991 Translation protein SH3-like domain superfamily BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 Gene3D G3DSA:2.30.30.30 2 104 4.1E-33 T 31-10-2018 IPR014722 Ribosomal protein L2, domain 2 BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 SMART SM00739 4 31 1.3E-5 T 31-10-2018 IPR005824 KOW BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 Pfam PF00467 KOW motif 7 35 4.5E-6 T 31-10-2018 IPR005824 KOW BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 102 1.9E-32 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19060 8a2ef680ed148c862c8292320da19eea 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.169 T 31-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 SUPERFAMILY SSF52833 106 196 3.47E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_19475 f76c4cec385d81c887c628d60395397b 530 Gene3D G3DSA:3.50.50.60 213 507 1.4E-109 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PIRSF PIRSF000238 1 520 7.9E-268 T 31-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 503 1.0E-44 T 31-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 SUPERFAMILY SSF51905 209 513 8.84E-53 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19475 f76c4cec385d81c887c628d60395397b 530 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 516 1.3E-240 T 31-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 Pfam PF13192 Thioredoxin domain 125 195 2.2E-8 T 31-10-2018 IPR012336 Thioredoxin-like fold BRM88_19475 f76c4cec385d81c887c628d60395397b 530 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 344 364 - T 31-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 Gene3D G3DSA:3.40.30.80 1 200 1.0E-60 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 352 376 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 443 464 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 477 495 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 337 349 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 404 420 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 315 323 3.2E-64 T 31-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 Gene3D G3DSA:3.50.50.60 326 449 1.4E-109 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 374 6.1E-40 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 467 489 6.1E-40 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 6.1E-40 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 441 457 6.1E-40 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 314 332 6.1E-40 T 31-10-2018 BRM88_19475 f76c4cec385d81c887c628d60395397b 530 SUPERFAMILY SSF52833 1 101 1.68E-30 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 23 221 4.2E-55 T 31-10-2018 BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 SUPERFAMILY SSF53335 19 222 1.74E-42 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 17 225 34.635 T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 18 222 1.7E-60 T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 145 160 - T 31-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BRM88_15755 66614f0accb844eea3a792e1c6c7d9b3 225 Gene3D G3DSA:3.40.50.150 13 224 9.4E-72 T 31-10-2018 BRM88_21350 033f72d873e959d4522b7378211e0508 266 Pfam PF04338 Protein of unknown function, DUF481 47 265 5.6E-60 T 31-10-2018 IPR007433 Protein of unknown function DUF481 BRM88_03390 b440fde885b22432747eded579c6faf2 635 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 202 213 - T 31-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BRM88_03390 b440fde885b22432747eded579c6faf2 635 PRINTS PR00723 Subtilisin serine protease family (S8) signature 265 278 3.2E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_03390 b440fde885b22432747eded579c6faf2 635 PRINTS PR00723 Subtilisin serine protease family (S8) signature 197 216 3.2E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_03390 b440fde885b22432747eded579c6faf2 635 PRINTS PR00723 Subtilisin serine protease family (S8) signature 453 469 3.2E-19 T 31-10-2018 IPR015500 Peptidase S8, subtilisin-related BRM88_03390 b440fde885b22432747eded579c6faf2 635 Pfam PF00082 Subtilase family 197 496 4.8E-44 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_03390 b440fde885b22432747eded579c6faf2 635 Gene3D G3DSA:3.40.50.200 165 528 2.8E-90 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_03390 b440fde885b22432747eded579c6faf2 635 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 454 464 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BRM88_03390 b440fde885b22432747eded579c6faf2 635 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 554 618 1.2E-8 T 31-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial BRM88_03390 b440fde885b22432747eded579c6faf2 635 SUPERFAMILY SSF52743 125 522 7.72E-69 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_03390 b440fde885b22432747eded579c6faf2 635 Gene3D G3DSA:2.60.120.380 534 634 8.6E-21 T 31-10-2018 BRM88_10245 3d17930ffb1d1dc18e35e754124b41e0 418 SUPERFAMILY SSF53756 34 325 4.32E-30 T 31-10-2018 BRM88_10245 3d17930ffb1d1dc18e35e754124b41e0 418 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 30 409 41.341 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_10245 3d17930ffb1d1dc18e35e754124b41e0 418 Pfam PF02684 Lipid-A-disaccharide synthetase 34 380 1.7E-110 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_10245 3d17930ffb1d1dc18e35e754124b41e0 418 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 30 404 2.5E-112 T 31-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BRM88_22960 10dac961cbe72a164390102642d44323 319 Pfam PF06189 5'-nucleotidase 38 308 1.9E-107 T 31-10-2018 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821|Reactome: R-HSA-74259 BRM88_22960 10dac961cbe72a164390102642d44323 319 SUPERFAMILY SSF56784 162 294 8.25E-5 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 Gene3D G3DSA:2.60.40.200 4 152 3.9E-42 T 31-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 45 55 - T 31-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 122 148 2.9E-6 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 82 91 2.9E-6 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 45 67 2.9E-6 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 SUPERFAMILY SSF49329 5 147 2.23E-40 T 31-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 136 147 - T 31-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23825 bab7479f67ecf10214e22e99c9199aba 159 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 14 147 4.4E-36 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_18135 601a425dfb522c00a718796a3a99b7ab 168 Pfam PF04191 Phospholipid methyltransferase 58 156 8.3E-12 T 31-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 BRM88_18135 601a425dfb522c00a718796a3a99b7ab 168 Gene3D G3DSA:1.20.120.1630 6 168 1.8E-22 T 31-10-2018 BRM88_18135 601a425dfb522c00a718796a3a99b7ab 168 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 138 168 4.0E-11 T 31-10-2018 BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 Gene3D G3DSA:3.40.30.10 92 175 6.2E-23 T 31-10-2018 BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 Gene3D G3DSA:1.10.10.1590 17 90 4.9E-22 T 31-10-2018 BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 SUPERFAMILY SSF52833 20 174 1.57E-46 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 26 174 3.8E-59 T 31-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 PIRSF PIRSF000216 4 175 5.7E-52 T 31-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17265 79f27d1def47eaaefec9bf21b4d4e8ea 175 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 27 174 4.2E-46 T 31-10-2018 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Gene3D G3DSA:3.20.20.220 155 536 1.0E-135 T 31-10-2018 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 SUPERFAMILY SSF53720 585 1051 3.01E-125 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 SUPERFAMILY SSF51730 199 544 4.32E-113 T 31-10-2018 IPR029041 FAD-linked oxidoreductase-like BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 SUPERFAMILY SSF81935 27 198 2.09E-63 T 31-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Pfam PF01619 Proline dehydrogenase 210 501 1.6E-91 T 31-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Gene3D G3DSA:3.40.605.10 577 1048 1.2E-151 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 848 859 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 PIRSF PIRSF000197 13 1062 0.0 T 31-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 83 196 1.5E-44 T 31-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Gene3D G3DSA:3.40.309.10 823 1015 1.2E-151 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Pfam PF00171 Aldehyde dehydrogenase family 589 1048 7.2E-115 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 Gene3D G3DSA:3.20.20.220 25 130 4.9E-10 T 31-10-2018 BRM88_22130 7f7056185517fce7787ffb296b1e011e 1066 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 543 1044 7.5E-213 T 31-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 BRM88_15895 8ddfabb70cef0cc40ab5398864ccc33f 471 SUPERFAMILY SSF103473 20 469 9.94E-56 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_15895 8ddfabb70cef0cc40ab5398864ccc33f 471 ProSitePatterns PS00216 Sugar transport proteins signature 1. 96 112 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_15895 8ddfabb70cef0cc40ab5398864ccc33f 471 Pfam PF00083 Sugar (and other) transporter 39 469 6.0E-28 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BRM88_15895 8ddfabb70cef0cc40ab5398864ccc33f 471 Gene3D G3DSA:1.20.1250.20 26 471 1.4E-60 T 31-10-2018 BRM88_15895 8ddfabb70cef0cc40ab5398864ccc33f 471 ProSitePatterns PS00217 Sugar transport proteins signature 2. 138 163 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_19995 af7e59acbf9d7ca8a33553462b331fe2 322 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 33 314 2.0E-98 T 31-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 BRM88_19995 af7e59acbf9d7ca8a33553462b331fe2 322 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 318 3.0E-114 T 31-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 BRM88_19995 af7e59acbf9d7ca8a33553462b331fe2 322 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 322 34.522 T 31-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 BRM88_19995 af7e59acbf9d7ca8a33553462b331fe2 322 Gene3D G3DSA:3.40.718.10 1 322 7.1E-112 T 31-10-2018 BRM88_19995 af7e59acbf9d7ca8a33553462b331fe2 322 SUPERFAMILY SSF53659 3 321 2.08E-102 T 31-10-2018 BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 257 2.5E-19 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 SUPERFAMILY SSF56219 1 264 1.96E-74 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 31-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 Gene3D G3DSA:3.60.10.10 1 265 6.9E-81 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 262 1.5E-63 T 31-10-2018 BRM88_02550 ade8a1eaf09856e1f587e67b31d10ac3 266 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 264 5.7E-70 T 31-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BRM88_18455 11f701dd30f680e7c3b7253c876db49c 330 Pfam PF04471 Restriction endonuclease 194 305 1.5E-23 T 31-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 BRM88_18455 11f701dd30f680e7c3b7253c876db49c 330 SUPERFAMILY SSF52980 197 309 1.34E-11 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_18455 11f701dd30f680e7c3b7253c876db49c 330 PIRSF PIRSF031853 1 330 1.2E-150 T 31-10-2018 IPR016984 Uncharacterised conserved protein UCP031853 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 53 515 1.7E-139 T 31-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 SUPERFAMILY SSF53756 40 521 4.54E-100 T 31-10-2018 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 Pfam PF00534 Glycosyl transferases group 1 338 476 2.8E-13 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 Pfam PF08323 Starch synthase catalytic domain 53 284 2.8E-62 T 31-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 Hamap MF_00484 Glycogen synthase [glgA]. 51 516 38.202 T 31-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 Gene3D G3DSA:3.40.50.2000 300 500 1.1E-144 T 31-10-2018 BRM88_00370 c4cd07072bd75ca836867f04855d5faa 527 Gene3D G3DSA:3.40.50.2000 53 514 1.1E-144 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 Gene3D G3DSA:1.20.1260.30 1 149 1.9E-43 T 31-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 263 269 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 Pfam PF02384 N-6 DNA Methylase 124 416 3.1E-71 T 31-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 Gene3D G3DSA:3.40.50.150 150 450 3.3E-68 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 Pfam PF12161 HsdM N-terminal domain 7 112 2.5E-9 T 31-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 147 163 6.3E-19 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 289 313 6.3E-19 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 171 185 6.3E-19 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 260 272 6.3E-19 T 31-10-2018 BRM88_18480 a44e66a2f38502d8df123f28f8b39291 514 SUPERFAMILY SSF53335 4 491 3.59E-121 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_10375 8bbebcf771b04f259da70ed56df5b930 166 Pfam PF13508 Acetyltransferase (GNAT) domain 54 123 1.0E-12 T 31-10-2018 IPR000182 GNAT domain BRM88_10375 8bbebcf771b04f259da70ed56df5b930 166 Gene3D G3DSA:3.40.630.30 1 135 1.2E-22 T 31-10-2018 BRM88_10375 8bbebcf771b04f259da70ed56df5b930 166 SUPERFAMILY SSF55729 2 135 2.3E-21 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 Pfam PF00487 Fatty acid desaturase 75 299 1.0E-25 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 231 252 7.2E-18 T 31-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 135 164 7.2E-18 T 31-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 53 73 7.2E-18 T 31-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 98 118 7.2E-18 T 31-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 BRM88_10030 68b2a352a0bbeeb407542585be148d2c 332 PRINTS PR00075 Fatty acid desaturase family 1 signature 274 288 7.2E-18 T 31-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 12 127 3.2E-26 T 31-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 217 298 6.5E-11 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 PIRSF PIRSF000188 1 351 1.2E-148 T 31-10-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 73 86 - T 31-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 SUPERFAMILY SSF51735 141 344 7.29E-48 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 Gene3D G3DSA:3.40.50.720 133 335 2.4E-136 T 31-10-2018 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 65 79 5.4E-17 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 285 296 5.4E-17 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 175 195 5.4E-17 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 131 153 5.4E-17 T 31-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 SMART SM00839 143 350 2.1E-74 T 31-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 Gene3D G3DSA:3.40.50.10860 9 342 2.4E-136 T 31-10-2018 BRM88_09820 1d7511f69ddec55a01bc30f47bff4606 366 SUPERFAMILY SSF53223 3 143 2.78E-46 T 31-10-2018 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 689 711 - T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 SUPERFAMILY SSF51998 293 821 9.77E-163 T 31-10-2018 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 Pfam PF02867 Ribonucleotide reductase, barrel domain 294 816 1.1E-144 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 Gene3D G3DSA:3.20.70.20 138 825 1.3E-193 T 31-10-2018 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 SUPERFAMILY SSF48168 71 292 1.12E-48 T 31-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 573 596 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 639 662 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 700 727 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 369 388 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 512 523 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 PRINTS PR01183 Ribonucleotide reductase large chain signature 611 633 2.5E-37 T 31-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 207 290 6.5E-15 T 31-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_02370 3f5ea2ce4666efa15e84bbc74ffebbec 832 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 211 819 8.1E-167 T 31-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 Gene3D G3DSA:1.10.260.80 29 79 3.8E-61 T 31-10-2018 BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 Gene3D G3DSA:3.40.50.1000 17 196 3.8E-61 T 31-10-2018 IPR023214 HAD superfamily BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 18 180 1.9E-9 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 SUPERFAMILY SSF56784 14 202 6.1E-36 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 20 174 7.3E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_21265 6ea37711e92cfe9b1b71821574902c23 207 Pfam PF00702 haloacid dehalogenase-like hydrolase 70 174 5.2E-15 T 31-10-2018 BRM88_03900 0b1978ff67e0eca63d5a515eccd63183 358 SUPERFAMILY SSF51735 3 355 3.71E-62 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_03900 0b1978ff67e0eca63d5a515eccd63183 358 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 277 9.5E-39 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BRM88_20095 d4c18f0d47e784a7ccb76d41b69d5775 199 Pfam PF00005 ABC transporter 1 141 7.0E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_20095 d4c18f0d47e784a7ccb76d41b69d5775 199 SMART SM00382 5 189 9.9E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_20095 d4c18f0d47e784a7ccb76d41b69d5775 199 ProSitePatterns PS00211 ABC transporters family signature. 114 128 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_20095 d4c18f0d47e784a7ccb76d41b69d5775 199 Gene3D G3DSA:3.40.50.300 1 199 4.1E-63 T 31-10-2018 BRM88_20095 d4c18f0d47e784a7ccb76d41b69d5775 199 SUPERFAMILY SSF52540 1 195 3.39E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_21595 30998d538e6d89b0a9d5f5cf5124a8c7 282 SUPERFAMILY SSF53383 2 275 2.75E-59 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_21595 30998d538e6d89b0a9d5f5cf5124a8c7 282 Pfam PF01212 Beta-eliminating lyase 3 277 2.5E-30 T 31-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 BRM88_21595 30998d538e6d89b0a9d5f5cf5124a8c7 282 Gene3D G3DSA:3.40.640.10 2 235 5.7E-95 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_21595 30998d538e6d89b0a9d5f5cf5124a8c7 282 Gene3D G3DSA:3.90.1150.10 236 277 5.7E-95 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.70.1430 40 132 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.70.1430 561 655 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82693 40 131 7.15E-21 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82866 831 1053 2.22E-44 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Pfam PF00873 AcrB/AcrD/AcrF family 4 1051 4.1E-297 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.70.1440 656 707 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.70.1440 842 891 8.2E-73 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82714 710 780 3.53E-10 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 546 563 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 613 627 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 8.3E-73 T 31-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.2090.10 177 267 7.7E-206 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82693 136 322 6.54E-22 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82866 289 489 5.36E-48 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:1.20.1640.10 10 506 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82693 559 655 1.44E-12 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.2090.10 814 833 8.2E-73 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.2090.10 708 781 7.7E-206 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 SUPERFAMILY SSF82714 181 265 4.19E-16 T 31-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:3.30.70.1320 133 324 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:1.20.1640.10 507 560 7.7E-206 T 31-10-2018 BRM88_22340 7f061c99abaf74e499959658dbb70843 1082 Gene3D G3DSA:1.20.1640.10 892 1048 8.2E-73 T 31-10-2018 BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 SUPERFAMILY SSF55785 255 382 1.08E-8 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 547 701 5.8E-53 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 SUPERFAMILY SSF58104 454 736 1.31E-70 T 31-10-2018 BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 Gene3D G3DSA:1.10.287.950 435 736 1.5E-84 T 31-10-2018 BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 SMART SM00283 487 734 4.3E-88 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_15140 e34e44dcc1420695a059556a36ea533a 780 Gene3D G3DSA:3.30.450.20 267 390 6.5E-25 T 31-10-2018 BRM88_13465 08f5a18b8d0dea23bf461c824d1fdc77 204 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 25 195 8.0E-87 T 31-10-2018 BRM88_13465 08f5a18b8d0dea23bf461c824d1fdc77 204 SUPERFAMILY SSF101322 3 203 1.57E-61 T 31-10-2018 IPR035932 HflD-like superfamily BRM88_13465 08f5a18b8d0dea23bf461c824d1fdc77 204 Gene3D G3DSA:1.10.3890.10 2 204 3.0E-60 T 31-10-2018 IPR035932 HflD-like superfamily BRM88_13465 08f5a18b8d0dea23bf461c824d1fdc77 204 Pfam PF04356 Protein of unknown function (DUF489) 8 196 2.2E-60 T 31-10-2018 IPR007451 High frequency lysogenization protein HflD BRM88_13465 08f5a18b8d0dea23bf461c824d1fdc77 204 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 204 30.363 T 31-10-2018 IPR007451 High frequency lysogenization protein HflD BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 Gene3D G3DSA:1.10.3210.10 129 363 8.9E-45 T 31-10-2018 BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 Pfam PF08668 HDOD domain 140 315 2.9E-27 T 31-10-2018 IPR013976 Metal-dependent hydrolase HDOD BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 Gene3D G3DSA:3.40.50.2300 1 128 8.4E-9 T 31-10-2018 BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 PIRSF PIRSF036883 1 369 2.1E-163 T 31-10-2018 IPR014626 Signal transduction response regulator with modified HD-GYP domain, putative BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 SUPERFAMILY SSF109604 129 339 1.44E-39 T 31-10-2018 BRM88_04815 7068c52bc17d4c3023a475eb40b620a6 371 SUPERFAMILY SSF52172 1 131 1.15E-11 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_22945 97d4e92978263a554ab78e8734ada634 89 Pfam PF00550 Phosphopantetheine attachment site 10 65 9.9E-9 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain BRM88_22945 97d4e92978263a554ab78e8734ada634 89 Gene3D G3DSA:1.10.1200.10 6 88 4.5E-18 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_22945 97d4e92978263a554ab78e8734ada634 89 SUPERFAMILY SSF47336 5 84 2.49E-12 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_16945 8429c71d887c1957b41074e3ad32267c 263 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 79 245 3.2E-32 T 31-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BRM88_16945 8429c71d887c1957b41074e3ad32267c 263 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 80 244 1.1E-51 T 31-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BRM88_04440 d34260d206a6bde7f0b1e0ce0801a33b 146 SUPERFAMILY SSF55785 38 121 3.49E-9 T 31-10-2018 IPR035965 PAS domain superfamily BRM88_04440 d34260d206a6bde7f0b1e0ce0801a33b 146 Pfam PF08670 MEKHLA domain 10 142 4.2E-43 T 31-10-2018 IPR013978 MEKHLA BRM88_04440 d34260d206a6bde7f0b1e0ce0801a33b 146 Gene3D G3DSA:3.30.450.20 33 136 4.5E-8 T 31-10-2018 BRM88_03180 10bae457c8e6de01ba63347a6b042597 249 Pfam PF11828 Protein of unknown function (DUF3348) 5 247 2.7E-82 T 31-10-2018 IPR021783 Protein of unknown function DUF3348 BRM88_23180 a396ce741b22df025d4434bc58465f1d 343 SUPERFAMILY SSF46689 11 129 4.3E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_23180 a396ce741b22df025d4434bc58465f1d 343 Gene3D G3DSA:3.30.420.470 135 334 3.2E-8 T 31-10-2018 BRM88_23180 a396ce741b22df025d4434bc58465f1d 343 Pfam PF13358 DDE superfamily endonuclease 171 310 5.5E-31 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_23180 a396ce741b22df025d4434bc58465f1d 343 Pfam PF13551 Winged helix-turn helix 18 77 8.2E-15 T 31-10-2018 BRM88_23180 a396ce741b22df025d4434bc58465f1d 343 Pfam PF13592 Winged helix-turn helix 95 153 2.6E-17 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_24045 c495fd6cdc65b0f4746e78b2d92db147 284 Gene3D G3DSA:3.40.50.150 50 242 2.3E-19 T 31-10-2018 BRM88_24045 c495fd6cdc65b0f4746e78b2d92db147 284 SUPERFAMILY SSF53335 58 247 1.22E-14 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_24045 c495fd6cdc65b0f4746e78b2d92db147 284 PIRSF PIRSF031679 9 284 1.4E-115 T 31-10-2018 IPR016980 S-adenosyl-L-methionine dependent methyltransferase, Alr7345, predicted BRM88_09855 08b08a998a802fd297271a5863e791e0 188 SUPERFAMILY SSF50182 106 179 8.5E-9 T 31-10-2018 IPR010920 LSM domain superfamily BRM88_09855 08b08a998a802fd297271a5863e791e0 188 Pfam PF00924 Mechanosensitive ion channel 63 180 4.5E-13 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BRM88_08825 13a9233102e8432df5f3beaebb7ee472 388 Pfam PF17482 Phage tail sheath C-terminal domain 274 371 2.6E-11 T 31-10-2018 IPR020287 Tail sheath protein, C-terminal domain BRM88_08825 13a9233102e8432df5f3beaebb7ee472 388 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 109 272 7.1E-25 T 31-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 SUPERFAMILY SSF50249 39 136 3.57E-15 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 436 7.9E-154 T 31-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 Pfam PF00575 S1 RNA binding domain 38 76 2.4E-4 T 31-10-2018 IPR003029 S1 domain GO:0003676 BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 Gene3D G3DSA:2.40.50.140 32 135 1.4E-28 T 31-10-2018 BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 Gene3D G3DSA:3.40.1260.20 412 498 6.9E-7 T 31-10-2018 BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 Pfam PF10150 Ribonuclease E/G family 132 403 5.3E-103 T 31-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BRM88_17660 a73e097ae6d596043d2e8fa7e54db104 499 SMART SM00316 37 130 3.3E-4 T 31-10-2018 IPR022967 RNA-binding domain, S1 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 Pfam PF00572 Ribosomal protein L13 15 138 5.4E-54 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 SUPERFAMILY SSF52161 1 140 1.96E-57 T 31-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 PIRSF PIRSF002181 1 142 3.1E-49 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 3 142 1.9E-62 T 31-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 27.86 T 31-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 Gene3D G3DSA:3.90.1180.10 1 142 2.7E-61 T 31-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_22175 8ba4f024e059de10681140fc3d0aa862 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 31-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 15 306 28.465 T 31-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 ProSitePatterns PS01058 SAICAR synthetase signature 2. 218 226 - T 31-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 Pfam PF01259 SAICAR synthetase 19 281 6.6E-98 T 31-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 ProSitePatterns PS01057 SAICAR synthetase signature 1. 119 133 - T 31-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 SUPERFAMILY SSF56104 7 307 2.55E-100 T 31-10-2018 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 Gene3D G3DSA:3.30.470.20 119 262 5.3E-59 T 31-10-2018 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 20 305 6.6E-75 T 31-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 BRM88_21625 113b6c6a4c9c891e4c49dc1f6afa3422 310 Gene3D G3DSA:3.30.200.20 5 117 8.0E-30 T 31-10-2018 BRM88_17010 da5cad4de60e5180964a2c88a999c7d3 118 SUPERFAMILY SSF46955 17 113 1.56E-17 T 31-10-2018 IPR009061 Putative DNA-binding domain superfamily BRM88_17010 da5cad4de60e5180964a2c88a999c7d3 118 Pfam PF13411 MerR HTH family regulatory protein 19 86 1.4E-21 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_17010 da5cad4de60e5180964a2c88a999c7d3 118 SMART SM00422 19 89 2.2E-5 T 31-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BRM88_17010 da5cad4de60e5180964a2c88a999c7d3 118 Gene3D G3DSA:1.10.1660.10 13 87 7.3E-21 T 31-10-2018 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 SMART SM00388 15 80 1.1E-8 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 Gene3D G3DSA:1.10.287.130 2 78 2.6E-10 T 31-10-2018 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 SUPERFAMILY SSF55874 69 238 3.8E-30 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07685 700cf3864f880c0b5892d07708e45981 239 SMART SM00387 129 238 8.2E-14 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_07685 700cf3864f880c0b5892d07708e45981 239 SUPERFAMILY SSF47384 14 80 2.35E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 Gene3D G3DSA:3.30.565.10 85 239 1.3E-24 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_07685 700cf3864f880c0b5892d07708e45981 239 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 132 231 1.1E-12 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_07685 700cf3864f880c0b5892d07708e45981 239 Pfam PF00512 His Kinase A (phospho-acceptor) domain 19 78 2.7E-9 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 PRINTS PR00344 Bacterial sensor protein C-terminal signature 166 180 1.2E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 PRINTS PR00344 Bacterial sensor protein C-terminal signature 184 194 1.2E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 PRINTS PR00344 Bacterial sensor protein C-terminal signature 200 218 1.2E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_07685 700cf3864f880c0b5892d07708e45981 239 PRINTS PR00344 Bacterial sensor protein C-terminal signature 224 237 1.2E-7 T 31-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 25 128 2.0E-37 T 31-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 7 128 35.561 T 31-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 Pfam PF01521 Iron-sulphur cluster biosynthesis 23 123 1.0E-18 T 31-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 SUPERFAMILY SSF89360 23 117 1.67E-29 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 Gene3D G3DSA:2.60.300.12 23 128 2.7E-34 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_02645 e791ec63660737e1ebc7c4615bf0addb 128 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 109 126 - T 31-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BRM88_16930 b1907de40b0804b54070bf69ddfeec3d 360 SUPERFAMILY SSF53098 204 334 6.83E-9 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_16930 b1907de40b0804b54070bf69ddfeec3d 360 SUPERFAMILY SSF46689 32 132 2.87E-17 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16930 b1907de40b0804b54070bf69ddfeec3d 360 Pfam PF13358 DDE superfamily endonuclease 172 318 6.3E-23 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_16930 b1907de40b0804b54070bf69ddfeec3d 360 Pfam PF13518 Helix-turn-helix domain 33 86 7.9E-15 T 31-10-2018 BRM88_15190 80b53e20020fe0dddaf757da42fc2fcd 265 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 22 261 30.063 T 31-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 BRM88_15190 80b53e20020fe0dddaf757da42fc2fcd 265 Gene3D G3DSA:2.30.110.10 25 135 1.3E-11 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BRM88_15190 80b53e20020fe0dddaf757da42fc2fcd 265 Pfam PF07238 PilZ domain 135 252 1.3E-11 T 31-10-2018 IPR009875 PilZ domain GO:0035438 BRM88_15190 80b53e20020fe0dddaf757da42fc2fcd 265 Pfam PF07317 Flagellar regulator YcgR 27 133 2.4E-27 T 31-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal BRM88_15190 80b53e20020fe0dddaf757da42fc2fcd 265 Gene3D G3DSA:2.40.10.220 136 256 2.2E-22 T 31-10-2018 BRM88_00645 a0ae2fedda7581b440800c5994028081 316 Pfam PF05598 Transposase domain (DUF772) 50 122 2.9E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00645 a0ae2fedda7581b440800c5994028081 316 Pfam PF01609 Transposase DDE domain 135 310 1.6E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_20960 1914753e9abbfb10923b775b023e5ea7 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_20960 1914753e9abbfb10923b775b023e5ea7 411 Pfam PF01610 Transposase 155 389 1.5E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_04060 40a26e897befad7085051c63b09297b9 564 SUPERFAMILY SSF55681 10 474 1.83E-99 T 31-10-2018 BRM88_04060 40a26e897befad7085051c63b09297b9 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.8E-16 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BRM88_04060 40a26e897befad7085051c63b09297b9 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.8E-16 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BRM88_04060 40a26e897befad7085051c63b09297b9 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 6.8E-16 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BRM88_04060 40a26e897befad7085051c63b09297b9 564 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 6.8E-16 T 31-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BRM88_04060 40a26e897befad7085051c63b09297b9 564 SUPERFAMILY SSF55826 219 386 3.4E-33 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Gene3D G3DSA:3.30.930.10 11 461 2.7E-221 T 31-10-2018 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Pfam PF03129 Anticodon binding domain 471 555 1.0E-12 T 31-10-2018 IPR004154 Anticodon-binding BRM88_04060 40a26e897befad7085051c63b09297b9 564 SUPERFAMILY SSF52954 460 562 1.62E-23 T 31-10-2018 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Pfam PF04073 Aminoacyl-tRNA editing domain 256 375 2.5E-29 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Gene3D G3DSA:3.90.960.10 240 386 2.7E-221 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BRM88_04060 40a26e897befad7085051c63b09297b9 564 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 556 6.4E-211 T 31-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 3.7E-44 T 31-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 563 38.991 T 31-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BRM88_04060 40a26e897befad7085051c63b09297b9 564 Gene3D G3DSA:3.40.50.800 4 548 2.7E-221 T 31-10-2018 IPR036621 Anticodon-binding domain superfamily BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 SUPERFAMILY SSF50193 1 122 7.72E-53 T 31-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.8E-56 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 5.4E-59 T 31-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.421 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 SMART SM01374 1 122 4.2E-87 T 31-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 Gene3D G3DSA:2.40.150.20 1 122 7.9E-56 T 31-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BRM88_19065 23f198f6eba1e56db41b6c18b62c29dd 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 31-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_24420 1aebf864d8849031cab8135a54bd3bee 1143 Pfam PF13558 Putative exonuclease SbcCD, C subunit 972 1059 1.8E-20 T 31-10-2018 BRM88_24420 1aebf864d8849031cab8135a54bd3bee 1143 Gene3D G3DSA:3.40.1140.10 17 221 4.5E-7 T 31-10-2018 BRM88_24420 1aebf864d8849031cab8135a54bd3bee 1143 SUPERFAMILY SSF52540 42 1072 1.25E-10 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24420 1aebf864d8849031cab8135a54bd3bee 1143 Pfam PF13555 P-loop containing region of AAA domain 23 82 5.0E-22 T 31-10-2018 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 Gene3D G3DSA:1.10.10.10 148 214 7.2E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_24135 5083048b628b090df12730a9acdb57f1 222 Gene3D G3DSA:3.40.50.2300 1 129 4.6E-27 T 31-10-2018 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 SUPERFAMILY SSF52172 2 133 1.11E-26 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_24135 5083048b628b090df12730a9acdb57f1 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 6.9E-19 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 SMART SM00421 147 204 1.4E-23 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 SUPERFAMILY SSF46894 141 206 3.13E-19 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 SMART SM00448 2 116 2.3E-20 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 Pfam PF00072 Response regulator receiver domain 5 114 1.3E-21 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_24135 5083048b628b090df12730a9acdb57f1 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.3E-10 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_04820 252a3b0088b74d0e90d63d01ac573223 178 Gene3D G3DSA:3.90.80.10 1 175 3.0E-68 T 31-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BRM88_04820 252a3b0088b74d0e90d63d01ac573223 178 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.333 T 31-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BRM88_04820 252a3b0088b74d0e90d63d01ac573223 178 Pfam PF00719 Inorganic pyrophosphatase 18 174 3.2E-53 T 31-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BRM88_04820 252a3b0088b74d0e90d63d01ac573223 178 SUPERFAMILY SSF50324 7 174 1.18E-66 T 31-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BRM88_02070 02a38b12cbb6dead096e026b48664acc 394 Pfam PF07394 Protein of unknown function (DUF1501) 31 382 2.8E-45 T 31-10-2018 IPR010869 Protein of unknown function DUF1501 BRM88_01270 93f36c1316a205bb635e29e61da9e2e5 161 SUPERFAMILY SSF52266 22 161 5.23E-31 T 31-10-2018 BRM88_01270 93f36c1316a205bb635e29e61da9e2e5 161 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 26 138 1.1E-7 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain BRM88_01270 93f36c1316a205bb635e29e61da9e2e5 161 Gene3D G3DSA:3.40.50.1110 21 161 2.9E-39 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 Pfam PF01479 S4 domain 28 74 9.3E-9 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 Gene3D G3DSA:3.10.290.10 17 82 1.3E-17 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 SUPERFAMILY SSF55120 97 327 1.76E-55 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 Pfam PF00849 RNA pseudouridylate synthase 109 262 1.0E-25 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 24 326 1.5E-73 T 31-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 Gene3D G3DSA:3.30.2350.10 100 328 1.4E-65 T 31-10-2018 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 SUPERFAMILY SSF55174 27 78 7.4E-9 T 31-10-2018 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 146 160 - T 31-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_16430 eda1e0cea5b76b0ef46a7d0d4c7fdb89 328 SMART SM00363 28 90 6.7E-7 T 31-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 SUPERFAMILY SSF56935 113 1021 3.57E-51 T 31-10-2018 BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 Gene3D G3DSA:2.40.170.20 254 641 1.4E-14 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 SUPERFAMILY SSF49464 33 119 3.3E-12 T 31-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 Gene3D G3DSA:2.60.40.1120 32 115 3.9E-11 T 31-10-2018 BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 Pfam PF13620 Carboxypeptidase regulatory-like domain 34 114 2.6E-16 T 31-10-2018 BRM88_17125 020f0b1e40baa453b3cf2d33c3c93d76 1064 Pfam PF07715 TonB-dependent Receptor Plug Domain 145 244 2.7E-4 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_01870 522ca139e62654851b6d9929970de222 248 SMART SM00382 30 212 2.4E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_01870 522ca139e62654851b6d9929970de222 248 Pfam PF00005 ABC transporter 22 165 1.5E-29 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_01870 522ca139e62654851b6d9929970de222 248 SUPERFAMILY SSF52540 10 226 2.05E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01870 522ca139e62654851b6d9929970de222 248 Gene3D G3DSA:3.40.50.300 1 245 4.5E-68 T 31-10-2018 BRM88_23940 34e3fbeb5957c3cc2b113fd7274cc938 425 Pfam PF13657 HipA N-terminal domain 6 102 1.2E-21 T 31-10-2018 IPR017508 HipA, N-terminal subdomain 1 BRM88_23940 34e3fbeb5957c3cc2b113fd7274cc938 425 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 3 103 1.9E-34 T 31-10-2018 IPR017508 HipA, N-terminal subdomain 1 BRM88_23940 34e3fbeb5957c3cc2b113fd7274cc938 425 Pfam PF07804 HipA-like C-terminal domain 150 384 3.6E-52 T 31-10-2018 IPR012893 HipA-like, C-terminal BRM88_23940 34e3fbeb5957c3cc2b113fd7274cc938 425 Gene3D G3DSA:1.10.1070.20 263 349 4.6E-8 T 31-10-2018 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 SUPERFAMILY SSF52540 482 700 9.53E-63 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 SUPERFAMILY SSF90123 169 474 1.06E-50 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Pfam PF00005 ABC transporter 504 653 5.9E-32 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 SMART SM00382 513 697 9.5E-20 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Pfam PF03412 Peptidase C39 family 18 145 1.9E-34 T 31-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 ProSitePatterns PS00211 ABC transporters family signature. 625 639 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Gene3D G3DSA:3.40.50.300 479 718 9.3E-69 T 31-10-2018 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Gene3D G3DSA:1.20.1560.10 158 473 3.9E-53 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Gene3D G3DSA:3.90.70.10 7 153 6.4E-37 T 31-10-2018 BRM88_18915 a277d32e33cdcc3926e409948cf02bdb 719 Pfam PF00664 ABC transporter transmembrane region 176 440 4.3E-27 T 31-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BRM88_08785 1b8131f9c5ba94dbe2e9e3131e67ef43 85 SUPERFAMILY SSF47413 19 69 9.5E-5 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_08785 1b8131f9c5ba94dbe2e9e3131e67ef43 85 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 15 68 6.8E-22 T 31-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Gene3D G3DSA:3.40.50.300 37 263 1.9E-69 T 31-10-2018 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Pfam PF01583 Adenylylsulphate kinase 489 641 4.2E-70 T 31-10-2018 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 PRINTS PR00315 GTP-binding elongation factor signature 151 162 5.3E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 PRINTS PR00315 GTP-binding elongation factor signature 54 67 5.3E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 PRINTS PR00315 GTP-binding elongation factor signature 115 123 5.3E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 PRINTS PR00315 GTP-binding elongation factor signature 135 145 5.3E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 PRINTS PR00315 GTP-binding elongation factor signature 188 197 5.3E-13 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 SUPERFAMILY SSF52540 45 259 6.51E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 472 654 3.0E-77 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 - T 31-10-2018 IPR031157 Tr-type G domain, conserved site BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 SUPERFAMILY SSF52540 484 654 1.81E-35 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Gene3D G3DSA:3.40.50.300 465 657 2.2E-76 T 31-10-2018 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 486 658 37.974 T 31-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 44 487 51.988 T 31-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Pfam PF00009 Elongation factor Tu GTP binding domain 52 251 9.0E-41 T 31-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 53 457 1.8E-210 T 31-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 SUPERFAMILY SSF50447 267 355 8.94E-23 T 31-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Gene3D G3DSA:2.40.30.10 355 458 2.3E-34 T 31-10-2018 BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 SUPERFAMILY SSF50465 356 457 6.47E-33 T 31-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BRM88_18055 d83d2a442c4b9656b0d9f0ff41f60ab0 658 Gene3D G3DSA:2.40.30.10 268 353 9.9E-25 T 31-10-2018 BRM88_03280 8121387ff085d4097a5b56a7b6e837fc 531 Gene3D G3DSA:1.20.1740.10 5 465 1.1E-65 T 31-10-2018 BRM88_03280 8121387ff085d4097a5b56a7b6e837fc 531 Pfam PF13520 Amino acid permease 13 428 4.0E-39 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_03280 8121387ff085d4097a5b56a7b6e837fc 531 PIRSF PIRSF006060 1 466 1.2E-71 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_03280 8121387ff085d4097a5b56a7b6e837fc 531 PIRSF PIRSF006060 450 523 57.0 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 SUPERFAMILY SSF47823 23 119 3.14E-32 T 31-10-2018 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 27 108 1.3E-15 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 23 323 62.531 T 31-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 25 323 53.915 T 31-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 28 322 3.4E-112 T 31-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Pfam PF00589 Phage integrase family 131 308 1.3E-44 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Gene3D G3DSA:1.10.443.10 130 317 7.5E-63 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 Gene3D G3DSA:1.10.150.130 23 117 6.4E-18 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_04210 1e691e1434106693fc6b6a601add76dc 323 SUPERFAMILY SSF56349 125 321 2.03E-53 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_00395 404fa94816685d49fa58a1b2d252abfe 574 Pfam PF03109 ABC1 family 124 242 3.4E-29 T 31-10-2018 IPR004147 UbiB domain BRM88_00395 404fa94816685d49fa58a1b2d252abfe 574 SUPERFAMILY SSF56112 106 332 3.25E-21 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_08920 4388af87802dfbb1c0830165550c1678 594 Gene3D G3DSA:3.40.50.300 96 311 5.7E-24 T 31-10-2018 BRM88_08920 4388af87802dfbb1c0830165550c1678 594 Gene3D G3DSA:3.30.420.240 405 578 1.0E-11 T 31-10-2018 BRM88_08920 4388af87802dfbb1c0830165550c1678 594 Pfam PF03237 Terminase-like family 169 389 1.9E-61 T 31-10-2018 IPR004921 Terminase large subunit, T4likevirus-type BRM88_08920 4388af87802dfbb1c0830165550c1678 594 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 18 75 7.3E-26 T 31-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 BRM88_08920 4388af87802dfbb1c0830165550c1678 594 Pfam PF17289 Terminase RNaseH-like domain 419 577 1.4E-41 T 31-10-2018 IPR035421 Terminase, large subunit gp17-like BRM88_13010 42905d396a3c230fc3f85f8af3e1d9a9 416 Gene3D G3DSA:2.40.160.10 16 416 1.1E-82 T 31-10-2018 IPR023614 Porin domain superfamily BRM88_13010 42905d396a3c230fc3f85f8af3e1d9a9 416 SUPERFAMILY SSF56935 31 414 1.14E-8 T 31-10-2018 BRM88_13010 42905d396a3c230fc3f85f8af3e1d9a9 416 Pfam PF07396 Phosphate-selective porin O and P 41 416 5.6E-98 T 31-10-2018 IPR010870 Phosphate-selective porin O/P BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 383 529 2.7E-38 T 31-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 SUPERFAMILY SSF52518 4 180 2.63E-42 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 321 5.9E-29 T 31-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 172 2.0E-41 T 31-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Gene3D G3DSA:3.40.50.970 354 575 2.1E-64 T 31-10-2018 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 SUPERFAMILY SSF52467 184 352 9.0E-43 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Gene3D G3DSA:3.40.50.1220 181 335 6.4E-47 T 31-10-2018 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 Gene3D G3DSA:3.40.50.970 3 179 5.5E-54 T 31-10-2018 BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 SUPERFAMILY SSF52518 359 563 1.62E-58 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_22415 36e2a257866b8bf72b85e4488e7ca8be 575 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 420 439 - T 31-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BRM88_00775 fc5856f7d2d05f8686efcda1863b5058 76 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 71 5.5E-13 T 31-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM BRM88_00775 fc5856f7d2d05f8686efcda1863b5058 76 SUPERFAMILY SSF143120 1 74 6.15E-14 T 31-10-2018 IPR036165 YefM-like superfamily BRM88_00775 fc5856f7d2d05f8686efcda1863b5058 76 Gene3D G3DSA:3.40.1620.10 1 40 7.4E-7 T 31-10-2018 BRM88_00775 fc5856f7d2d05f8686efcda1863b5058 76 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 6 56 5.2E-16 T 31-10-2018 BRM88_08895 62c186f105edec250b91e85142d566ec 69 Gene3D G3DSA:3.10.350.10 1 69 9.6E-28 T 31-10-2018 IPR036779 LysM domain superfamily BRM88_08895 62c186f105edec250b91e85142d566ec 69 Pfam PF05489 Phage Tail Protein X 1 60 4.5E-29 T 31-10-2018 IPR008861 Phage Tail Protein X-like BRM88_12875 da3e045a2e1eb9ebea646d5a0e8a4042 339 Gene3D G3DSA:3.20.20.100 18 328 1.9E-59 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_12875 da3e045a2e1eb9ebea646d5a0e8a4042 339 SUPERFAMILY SSF51430 19 326 2.75E-57 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_12875 da3e045a2e1eb9ebea646d5a0e8a4042 339 Pfam PF00248 Aldo/keto reductase family 32 323 1.6E-37 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_20355 0608e5e81c45302c316fe39821788413 122 SUPERFAMILY SSF54593 11 121 3.09E-24 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_20355 0608e5e81c45302c316fe39821788413 122 Gene3D G3DSA:3.10.180.10 7 121 7.3E-17 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_03880 011b9defff879d6bfa69d2c0274b1c6b 72 Pfam PF04325 Protein of unknown function (DUF465) 20 66 1.2E-11 T 31-10-2018 IPR007420 Protein of unknown function DUF465 BRM88_03880 011b9defff879d6bfa69d2c0274b1c6b 72 Gene3D G3DSA:1.20.58.660 1 72 1.4E-9 T 31-10-2018 BRM88_13195 e4faea2c8dd9ffda6719392f6d267cf0 343 SUPERFAMILY SSF46689 19 129 1.51E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_13195 e4faea2c8dd9ffda6719392f6d267cf0 343 Pfam PF13592 Winged helix-turn helix 95 153 5.1E-18 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_13195 e4faea2c8dd9ffda6719392f6d267cf0 343 Gene3D G3DSA:3.30.420.470 135 335 5.8E-9 T 31-10-2018 BRM88_13195 e4faea2c8dd9ffda6719392f6d267cf0 343 Pfam PF13551 Winged helix-turn helix 20 77 6.8E-14 T 31-10-2018 BRM88_13195 e4faea2c8dd9ffda6719392f6d267cf0 343 Pfam PF13358 DDE superfamily endonuclease 171 308 1.3E-31 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 SUPERFAMILY SSF103263 4 351 1.96E-139 T 31-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.8E-132 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 PIRSF PIRSF001456 3 361 1.2E-129 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 34.923 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 Pfam PF01264 Chorismate synthase 10 345 3.5E-130 T 31-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 Gene3D G3DSA:3.60.150.10 1 361 8.5E-144 T 31-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_17415 1aea01e7861ae99667cfa65eb2988d38 367 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 31-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BRM88_03005 e4e670846e44889e79012ff4c5c85091 573 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 63 224 3.6E-17 T 31-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 20 29 - T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 7 349 4.9E-130 T 31-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 SUPERFAMILY SSF51726 1 353 2.62E-115 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 350 2.0E-137 T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 4 352 50.08 T 31-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 140 156 - T 31-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BRM88_06355 f4c5d7b1366b471f8edc2a265cbd13e9 354 Gene3D G3DSA:3.20.20.210 1 354 2.3E-149 T 31-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 PRINTS PR00799 Aspartate aminotransferase signature 343 361 7.0E-35 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 PRINTS PR00799 Aspartate aminotransferase signature 276 301 7.0E-35 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 PRINTS PR00799 Aspartate aminotransferase signature 208 220 7.0E-35 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 PRINTS PR00799 Aspartate aminotransferase signature 177 196 7.0E-35 T 31-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 Pfam PF00155 Aminotransferase class I and II 29 394 2.4E-79 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 246 259 - T 31-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 Gene3D G3DSA:3.90.1150.10 7 394 8.0E-157 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 Gene3D G3DSA:3.40.640.10 62 303 8.0E-157 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_00090 723d34236e36eb7312e711c75b548ceb 400 SUPERFAMILY SSF53383 2 396 6.88E-114 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_22510 68ac3029056cdaea0b3e00f2c4f80ebb 177 Pfam PF12802 MarR family 67 124 2.1E-9 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_22510 68ac3029056cdaea0b3e00f2c4f80ebb 177 SMART SM00347 61 161 2.0E-13 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_22510 68ac3029056cdaea0b3e00f2c4f80ebb 177 SUPERFAMILY SSF46785 36 172 2.91E-25 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_22510 68ac3029056cdaea0b3e00f2c4f80ebb 177 Gene3D G3DSA:1.10.10.10 29 175 1.8E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_05905 f4053b3501dd20c109b40aedf041bb97 252 Pfam PF05137 Fimbrial assembly protein (PilN) 100 189 1.9E-26 T 31-10-2018 IPR007813 Fimbrial assembly PilN BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Gene3D G3DSA:3.90.930.1 443 575 3.4E-8 T 31-10-2018 BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 720 761 5.0E-8 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 636 677 1.0E-5 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 938 978 7.6E-5 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 594 634 1.1E-6 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 678 718 3.2E-4 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 762 798 6.5E-6 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 553 590 3.5E-7 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 510 549 1.2E-7 T 31-10-2018 IPR006530 YD repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 SUPERFAMILY SSF101908 433 569 3.01E-6 T 31-10-2018 BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF14440 Xanthomonas XOO_2897-like deaminase 1416 1516 3.2E-21 T 31-10-2018 IPR032722 Deaminase, Xanthomonas XOO_2897-like BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Gene3D G3DSA:2.180.10.10 1242 1388 8.9E-17 T 31-10-2018 BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Gene3D G3DSA:2.180.10.10 832 995 9.1E-10 T 31-10-2018 BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Gene3D G3DSA:2.180.10.10 619 831 3.5E-9 T 31-10-2018 BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 938 974 1.6E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 742 777 2.7E-6 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 636 672 6.1E-9 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 552 589 7.7E-7 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 594 630 3.0E-6 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 Pfam PF05593 RHS Repeat 510 547 5.8E-11 T 31-10-2018 IPR031325 RHS repeat BRM88_08470 4cbde08fbf8568b70cf146d1f08f73e9 1527 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1313 1388 2.9E-17 T 31-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 BRM88_12665 0227e85f5e65f34f0458e742c6c97453 322 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 7 322 54.037 T 31-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 BRM88_12665 0227e85f5e65f34f0458e742c6c97453 322 SUPERFAMILY SSF56524 67 318 1.7E-91 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BRM88_12665 0227e85f5e65f34f0458e742c6c97453 322 Pfam PF00174 Oxidoreductase molybdopterin binding domain 99 254 8.4E-34 T 31-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 BRM88_12665 0227e85f5e65f34f0458e742c6c97453 322 Gene3D G3DSA:3.90.420.10 57 322 1.0E-106 T 31-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BRM88_18155 4872d35aa8a8cbd31b3b7e00e8f2e9fe 214 SUPERFAMILY SSF56784 5 213 1.53E-51 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_18155 4872d35aa8a8cbd31b3b7e00e8f2e9fe 214 Gene3D G3DSA:3.40.50.1000 6 202 6.9E-59 T 31-10-2018 IPR023214 HAD superfamily BRM88_18155 4872d35aa8a8cbd31b3b7e00e8f2e9fe 214 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 178 1.1E-5 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_18155 4872d35aa8a8cbd31b3b7e00e8f2e9fe 214 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 184 6.1E-34 T 31-10-2018 BRM88_18155 4872d35aa8a8cbd31b3b7e00e8f2e9fe 214 Gene3D G3DSA:1.10.150.240 17 83 6.9E-59 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_07200 25d763b749a8e66f6beef6f3823f2bdf 152 TIGRFAM TIGR02944 suf_reg_Xantho: FeS assembly SUF system regulator 1 130 1.8E-61 T 31-10-2018 IPR014290 SUF system FeS cluster assembly regulator BRM88_07200 25d763b749a8e66f6beef6f3823f2bdf 152 SUPERFAMILY SSF46785 3 134 1.04E-32 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_07200 25d763b749a8e66f6beef6f3823f2bdf 152 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 131 3.0E-30 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type BRM88_07200 25d763b749a8e66f6beef6f3823f2bdf 152 Pfam PF02082 Transcriptional regulator 3 82 5.1E-22 T 31-10-2018 IPR000944 Transcription regulator Rrf2-type BRM88_07200 25d763b749a8e66f6beef6f3823f2bdf 152 Gene3D G3DSA:1.10.10.10 1 142 4.3E-36 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_14480 c1ae8f5549a03f173c8eaa16326e226a 44 Gene3D G3DSA:3.30.420.10 1 43 2.6E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_14480 c1ae8f5549a03f173c8eaa16326e226a 44 SUPERFAMILY SSF53098 2 42 2.43E-9 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 SUPERFAMILY SSF55781 23 161 2.26E-18 T 31-10-2018 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 SUPERFAMILY SSF47384 175 243 4.32E-10 T 31-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 Pfam PF01590 GAF domain 24 154 1.0E-6 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 Gene3D G3DSA:3.30.450.40 19 165 2.9E-13 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 SMART SM00065 16 163 1.6E-9 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 Gene3D G3DSA:3.30.565.10 256 397 1.1E-13 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 Pfam PF00512 His Kinase A (phospho-acceptor) domain 183 243 1.6E-7 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 SUPERFAMILY SSF55874 259 400 8.36E-13 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 Gene3D G3DSA:1.10.287.130 168 248 1.6E-9 T 31-10-2018 BRM88_01170 8d0c6ddc3b9c42a8c70e131c9bbc282d 414 SMART SM00388 182 247 7.4E-6 T 31-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BRM88_23160 1fbd07d5b9d3ef067947cfca71b85a7d 99 SUPERFAMILY SSF53474 2 93 7.17E-15 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23160 1fbd07d5b9d3ef067947cfca71b85a7d 99 Gene3D G3DSA:3.40.50.1820 2 94 1.5E-11 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23160 1fbd07d5b9d3ef067947cfca71b85a7d 99 Pfam PF00561 alpha/beta hydrolase fold 27 79 1.7E-6 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-28 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 31-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.005 T 31-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 SMART SM00411 1 91 1.3E-39 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 SUPERFAMILY SSF47729 1 91 3.39E-30 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 91 1.6E-42 T 31-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.3E-18 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.3E-18 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.3E-18 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_11370 538b0bea2dd03d38ece722272a63475d 103 Gene3D G3DSA:4.10.520.10 1 93 1.8E-32 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 SUPERFAMILY SSF54909 70 157 1.88E-19 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 Gene3D G3DSA:3.30.70.920 62 158 1.5E-20 T 31-10-2018 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 ProSitePatterns PS00519 AsnC-type HTH domain signature. 26 52 - T 31-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 SMART SM00344 8 117 2.6E-41 T 31-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 7.9E-18 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 7.9E-18 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 7.9E-18 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 3.0E-18 T 31-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 Pfam PF01037 Lrp/AsnC ligand binding domain 74 148 2.0E-19 T 31-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 Gene3D G3DSA:1.10.10.10 1 61 1.2E-24 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_03450 9220a56cf0b9aadc26b6d577aea901dc 159 SUPERFAMILY SSF46785 7 66 1.69E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.3E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 SMART SM00448 1 112 8.8E-33 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 SUPERFAMILY SSF46894 118 217 1.45E-26 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 Pfam PF00072 Response regulator receiver domain 3 112 8.5E-25 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 SUPERFAMILY SSF52172 1 132 7.83E-37 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 Gene3D G3DSA:1.10.10.10 123 227 7.8E-29 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 SMART SM00862 145 216 5.9E-25 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_06050 98b1213ad0b79feebb95412900a0965f 232 Gene3D G3DSA:3.40.50.2300 1 121 5.6E-35 T 31-10-2018 BRM88_16245 3b6d685429d0b5761988f62f8a054d56 445 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 443 6.4E-148 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 BRM88_16245 3b6d685429d0b5761988f62f8a054d56 445 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 445 9.7E-150 T 31-10-2018 IPR010263 Type VI secretion protein, VC_A0114 BRM88_06975 b62216b946044efa929f347ba9b73d87 253 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 16 196 9.9E-28 T 31-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 BRM88_06975 b62216b946044efa929f347ba9b73d87 253 SUPERFAMILY SSF51621 5 241 1.92E-60 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_06975 b62216b946044efa929f347ba9b73d87 253 Gene3D G3DSA:3.20.20.60 2 242 1.7E-66 T 31-10-2018 BRM88_24295 a9d546f05eb6dfd151977ed393d775f8 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_24295 a9d546f05eb6dfd151977ed393d775f8 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_24295 a9d546f05eb6dfd151977ed393d775f8 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.5E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 190 202 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 10 29 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 29 49 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 187 212 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 163 184 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 142 162 8.7E-64 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 Pfam PF00813 FliP family 13 209 2.7E-63 T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 142 157 - T 31-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BRM88_00510 bad711ef19906a172cab4fc659f0f701 214 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 9 209 2.7E-89 T 31-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 BRM88_08765 cdba68fa75d8f8836624765001fa307d 890 SUPERFAMILY SSF56731 159 295 1.52E-6 T 31-10-2018 BRM88_08765 cdba68fa75d8f8836624765001fa307d 890 SUPERFAMILY SSF52540 550 703 8.26E-5 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_08765 cdba68fa75d8f8836624765001fa307d 890 Pfam PF13155 Toprim-like 173 266 7.5E-12 T 31-10-2018 BRM88_08765 cdba68fa75d8f8836624765001fa307d 890 Gene3D G3DSA:3.40.1360.10 155 284 1.4E-11 T 31-10-2018 BRM88_18085 fd1cd0182ae601037d34e7e3ea330840 686 Pfam PF00593 TonB dependent receptor 244 684 2.5E-34 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_18085 fd1cd0182ae601037d34e7e3ea330840 686 Gene3D G3DSA:2.170.130.10 53 177 5.4E-17 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_18085 fd1cd0182ae601037d34e7e3ea330840 686 SUPERFAMILY SSF56935 37 686 3.97E-94 T 31-10-2018 BRM88_18085 fd1cd0182ae601037d34e7e3ea330840 686 Gene3D G3DSA:2.40.170.20 185 686 2.2E-64 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_18085 fd1cd0182ae601037d34e7e3ea330840 686 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 169 1.3E-18 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_20315 90da7e3ea92bd4a4d04140377b7b9038 212 Gene3D G3DSA:3.40.50.200 22 211 2.7E-37 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_20315 90da7e3ea92bd4a4d04140377b7b9038 212 Pfam PF00082 Subtilase family 93 196 1.8E-5 T 31-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BRM88_20315 90da7e3ea92bd4a4d04140377b7b9038 212 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 126 136 - T 31-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BRM88_20315 90da7e3ea92bd4a4d04140377b7b9038 212 SUPERFAMILY SSF52743 37 207 8.51E-30 T 31-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BRM88_19835 09ee1661965dd1dadd31a19b8d81500d 69 Pfam PF13936 Helix-turn-helix domain 6 48 4.0E-15 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_05295 54aea1a71fb7364e087d9e08c784b0af 734 Gene3D G3DSA:3.40.50.1820 179 367 1.9E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05295 54aea1a71fb7364e087d9e08c784b0af 734 SUPERFAMILY SSF53474 203 300 1.37E-10 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05295 54aea1a71fb7364e087d9e08c784b0af 734 Pfam PF11678 Protein of unknown function (DUF3274) 418 709 6.6E-71 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 PIRSF PIRSF038885 5 419 1.4E-155 T 31-10-2018 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 Pfam PF00033 Cytochrome b/b6/petB 32 220 4.0E-68 T 31-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 Gene3D G3DSA:1.20.810.10 3 419 8.8E-148 T 31-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 SUPERFAMILY SSF81342 24 292 2.51E-95 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 SUPERFAMILY SSF81648 294 410 1.74E-31 T 31-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BRM88_14575 43e350819e207c28cf37dbdd60079514 419 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 290 393 1.4E-38 T 31-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BRM88_01065 6e1409ddec1bdf294c5d3187c561116d 717 Gene3D G3DSA:3.40.50.1820 163 342 1.8E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01065 6e1409ddec1bdf294c5d3187c561116d 717 Pfam PF11678 Protein of unknown function (DUF3274) 399 692 2.0E-71 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 BRM88_01065 6e1409ddec1bdf294c5d3187c561116d 717 SUPERFAMILY SSF53474 185 282 9.63E-11 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_00260 734c24c84af410e7b01cd4114733cd91 152 Pfam PF15535 Bacterial toxin 37 77 149 1.7E-11 T 31-10-2018 IPR029108 Bacterial toxin 37 BRM88_14960 3c5c4d4a076b6c8e67902510a9604c8e 319 SUPERFAMILY SSF53098 21 295 1.29E-13 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14960 3c5c4d4a076b6c8e67902510a9604c8e 319 Pfam PF13546 DDE superfamily endonuclease 19 278 8.2E-86 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 SUPERFAMILY SSF52172 1 174 2.85E-38 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 Gene3D G3DSA:1.10.10.10 125 226 4.4E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 SMART SM00862 147 221 2.4E-14 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 Gene3D G3DSA:3.40.50.2300 1 122 2.0E-34 T 31-10-2018 BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 2.7E-15 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 SMART SM00448 1 113 2.9E-40 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_18880 88fe55937a54fc9ee8f84642ad00ea78 238 Pfam PF00072 Response regulator receiver domain 4 113 4.3E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_06090 817faef4db62bad938afdc81b0faa952 276 SUPERFAMILY SSF56281 10 249 2.1E-49 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_06090 817faef4db62bad938afdc81b0faa952 276 SMART SM00849 14 205 9.9E-25 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_06090 817faef4db62bad938afdc81b0faa952 276 Gene3D G3DSA:3.60.15.10 1 274 7.7E-95 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_06090 817faef4db62bad938afdc81b0faa952 276 Pfam PF00753 Metallo-beta-lactamase superfamily 13 205 4.6E-20 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 262 274 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 164 183 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 236 248 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 275 288 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 113 123 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 208 214 8.7E-12 T 31-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 SUPERFAMILY SSF51430 1 319 4.06E-92 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 Pfam PF00248 Aldo/keto reductase family 16 317 1.1E-70 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_20155 21c5911f39f62e7b1cb754765ab6b3d3 322 Gene3D G3DSA:3.20.20.100 1 321 4.0E-113 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_10180 027ab27dd060f8cf1b968e0d5be3d72c 438 Gene3D G3DSA:3.40.50.1820 96 415 2.6E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_10180 027ab27dd060f8cf1b968e0d5be3d72c 438 SUPERFAMILY SSF53474 109 412 7.27E-33 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_10180 027ab27dd060f8cf1b968e0d5be3d72c 438 PIRSF PIRSF020818 1 427 3.2E-200 T 31-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase BRM88_10180 027ab27dd060f8cf1b968e0d5be3d72c 438 Pfam PF06850 PHB de-polymerase C-terminus 214 415 7.9E-100 T 31-10-2018 IPR009656 PHB de-polymerase, C-terminal BRM88_10180 027ab27dd060f8cf1b968e0d5be3d72c 438 TIGRFAM TIGR01849 PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular 5 415 1.2E-206 T 31-10-2018 IPR010915 Polyhydroxyalkanoate depolymerase BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 169 2.9E-28 T 31-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 13 33 1.3E-6 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 62 77 1.3E-6 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 Gene3D G3DSA:3.40.50.300 6 186 1.5E-47 T 31-10-2018 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 Pfam PF01926 50S ribosome-binding GTPase 13 127 1.4E-23 T 31-10-2018 IPR006073 GTP binding domain GO:0005525 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 Hamap MF_00367 GTPase Era [era]. 8 298 34.598 T 31-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 SUPERFAMILY SSF54814 184 299 2.75E-38 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 Pfam PF07650 KH domain 211 286 9.4E-20 T 31-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 SUPERFAMILY SSF52540 13 207 1.79E-42 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 TIGRFAM TIGR00436 era: GTP-binding protein Era 12 281 8.1E-78 T 31-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_09680 ee6b553f8429d6558e853020ef58ee65 299 Gene3D G3DSA:3.30.300.20 188 299 2.6E-39 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 TIGRFAM TIGR02249 integrase_gron: integron integrase 12 284 3.8E-133 T 31-10-2018 IPR011946 Integrase, integron-type GO:0003677|GO:0006310|GO:0015074 BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 Gene3D G3DSA:1.10.150.130 10 55 4.7E-11 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 Gene3D G3DSA:1.10.443.10 60 273 9.5E-62 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 14 53 4.3E-8 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 SUPERFAMILY SSF56349 64 272 3.24E-42 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_22565 8e79bbb4ff28c42ac440a731a71021c7 291 Pfam PF00589 Phage integrase family 70 270 2.1E-41 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BRM88_23905 edcbeb669cceb080dd029b22f5b5f922 190 Gene3D G3DSA:2.40.128.110 27 182 2.2E-20 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_23905 edcbeb669cceb080dd029b22f5b5f922 190 SMART SM00867 25 185 1.9E-20 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_23905 edcbeb669cceb080dd029b22f5b5f922 190 Pfam PF04264 YceI-like domain 28 180 7.5E-20 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_23905 edcbeb669cceb080dd029b22f5b5f922 190 SUPERFAMILY SSF101874 26 185 3.14E-27 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 Gene3D G3DSA:3.40.50.720 2 236 3.3E-61 T 31-10-2018 BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 Pfam PF00106 short chain dehydrogenase 3 187 1.0E-51 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 SUPERFAMILY SSF51735 3 227 2.47E-59 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.9E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.9E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.9E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.8E-23 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 6.8E-23 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 6.8E-23 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.8E-23 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 6.8E-23 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02465 0f3a93a1d07bc62ab45335c0614244b3 251 PIRSF PIRSF000126 1 222 2.5E-50 T 31-10-2018 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 5.5E-95 T 31-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.074 T 31-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 31-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 SUPERFAMILY SSF54821 108 206 1.83E-40 T 31-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 Gene3D G3DSA:3.30.300.20 17 107 3.2E-29 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 5.2E-40 T 31-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 SUPERFAMILY SSF54814 2 106 1.49E-37 T 31-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 Pfam PF07650 KH domain 38 111 1.3E-19 T 31-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 SMART SM00322 60 125 1.5E-10 T 31-10-2018 IPR004087 K Homology domain GO:0003676 BRM88_19085 e08367b2d0efa6203a468c3a77ea171a 244 Gene3D G3DSA:3.30.1140.32 108 208 3.6E-44 T 31-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 Pfam PF00263 Bacterial type II and III secretion system protein 446 603 1.5E-39 T 31-10-2018 IPR004846 Type II/III secretion system GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 321 604 5.3E-107 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 Gene3D G3DSA:3.30.1370.120 114 183 3.4E-16 T 31-10-2018 IPR038591 NolW-like superfamily BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 549 582 - T 31-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 Pfam PF03958 Bacterial type II/III secretion system short domain 186 365 6.6E-17 T 31-10-2018 IPR005644 NolW-like BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 459 478 2.8E-26 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 198 215 2.8E-26 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 493 508 2.8E-26 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 368 388 2.8E-26 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 582 601 2.8E-26 T 31-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BRM88_00445 bc0af04f55a9fc3c2bcaf3c41e8231e7 605 Gene3D G3DSA:3.55.50.30 30 113 5.0E-26 T 31-10-2018 BRM88_23290 40c25a5f4358e4e85c8399c13f7a5324 111 Pfam PF11804 Protein of unknown function (DUF3325) 4 104 4.2E-28 T 31-10-2018 IPR021762 Protein of unknown function DUF3325 BRM88_15565 9904f33a4033d3e8a80cac2e7a86adf3 160 Pfam PF00578 AhpC/TSA family 10 135 3.9E-31 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BRM88_15565 9904f33a4033d3e8a80cac2e7a86adf3 160 SUPERFAMILY SSF52833 13 157 8.75E-46 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_15565 9904f33a4033d3e8a80cac2e7a86adf3 160 Gene3D G3DSA:3.40.30.10 1 160 6.0E-49 T 31-10-2018 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 44 435 1.0E-98 T 31-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 Gene3D G3DSA:3.30.70.1170 174 231 7.0E-22 T 31-10-2018 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 319 330 - T 31-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 Gene3D G3DSA:3.40.50.150 232 436 8.9E-57 T 31-10-2018 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 SUPERFAMILY SSF53335 145 435 1.04E-61 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 SUPERFAMILY SSF48013 13 149 7.36E-26 T 31-10-2018 IPR035926 NusB-like superfamily BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 Gene3D G3DSA:1.10.940.10 11 144 5.6E-31 T 31-10-2018 IPR035926 NusB-like superfamily BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 Pfam PF01029 NusB family 13 134 2.1E-18 T 31-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 320 332 4.1E-27 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 223 237 4.1E-27 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 252 262 4.1E-27 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 370 386 4.1E-27 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 418 435 4.1E-27 T 31-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BRM88_03000 5c2c2d424ad830a1a19ba5d42b9554d5 437 Pfam PF01189 16S rRNA methyltransferase RsmB/F 242 433 7.0E-52 T 31-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 BRM88_19335 032a13e34f7eedba7ea34d5c45450abe 157 Pfam PF04073 Aminoacyl-tRNA editing domain 35 144 9.8E-22 T 31-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BRM88_19335 032a13e34f7eedba7ea34d5c45450abe 157 PIRSF PIRSF006181 1 157 5.9E-40 T 31-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BRM88_19335 032a13e34f7eedba7ea34d5c45450abe 157 SUPERFAMILY SSF55826 5 150 4.45E-37 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BRM88_19335 032a13e34f7eedba7ea34d5c45450abe 157 Gene3D G3DSA:3.90.960.10 1 157 1.1E-42 T 31-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BRM88_19335 032a13e34f7eedba7ea34d5c45450abe 157 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 5 155 4.0E-49 T 31-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BRM88_23425 85053578e7a5f2ba7e0ca84f06b11463 75 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 69 21.868 T 31-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BRM88_23425 85053578e7a5f2ba7e0ca84f06b11463 75 Pfam PF02416 mttA/Hcf106 family 5 48 9.9E-15 T 31-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BRM88_23425 85053578e7a5f2ba7e0ca84f06b11463 75 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 5.8E-23 T 31-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BRM88_11010 97cbc219e6572d7590f5f224d31ef031 254 Gene3D G3DSA:3.30.1150.10 150 251 6.8E-26 T 31-10-2018 BRM88_11010 97cbc219e6572d7590f5f224d31ef031 254 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 176 252 8.4E-23 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_11010 97cbc219e6572d7590f5f224d31ef031 254 SUPERFAMILY SSF74653 137 252 7.85E-23 T 31-10-2018 BRM88_11010 97cbc219e6572d7590f5f224d31ef031 254 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 175 251 1.3E-23 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_02290 06021b32bfada94af7374fe10f39ee8e 273 SUPERFAMILY SSF53448 10 226 4.64E-31 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_02290 06021b32bfada94af7374fe10f39ee8e 273 Pfam PF00535 Glycosyl transferase family 2 13 134 4.3E-19 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_02290 06021b32bfada94af7374fe10f39ee8e 273 Gene3D G3DSA:3.90.550.10 3 254 9.9E-39 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_01865 8d58a167a7c772f4e8563c02fe985e32 533 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 124 132 6.6E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_01865 8d58a167a7c772f4e8563c02fe985e32 533 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 155 166 6.6E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_01865 8d58a167a7c772f4e8563c02fe985e32 533 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 235 249 6.6E-6 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_01865 8d58a167a7c772f4e8563c02fe985e32 533 Pfam PF08386 TAP-like protein 417 515 1.1E-19 T 31-10-2018 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal BRM88_01865 8d58a167a7c772f4e8563c02fe985e32 533 SUPERFAMILY SSF53474 117 490 1.42E-28 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_10830 fe276623459b8724505563e88cf09fe6 481 Gene3D G3DSA:3.40.50.1110 260 478 9.0E-54 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_10830 fe276623459b8724505563e88cf09fe6 481 Gene3D G3DSA:3.40.50.1110 14 242 2.1E-46 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_10830 fe276623459b8724505563e88cf09fe6 481 SUPERFAMILY SSF52266 12 238 4.58E-39 T 31-10-2018 BRM88_10830 fe276623459b8724505563e88cf09fe6 481 SUPERFAMILY SSF52266 262 474 1.48E-47 T 31-10-2018 BRM88_10830 fe276623459b8724505563e88cf09fe6 481 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 48 224 1.6E-18 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain BRM88_10830 fe276623459b8724505563e88cf09fe6 481 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 291 467 2.6E-23 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain BRM88_08310 997ceb23e0f2fd4bfa2890814a0d436f 358 Pfam PF14486 Domain of unknown function (DUF4432) 19 323 2.1E-99 T 31-10-2018 IPR027839 Protein of unknown function DUF4432 BRM88_08310 997ceb23e0f2fd4bfa2890814a0d436f 358 Gene3D G3DSA:2.70.98.80 2 357 1.5E-111 T 31-10-2018 BRM88_11525 13ed677a3bd6d720dffda4f79c71351c 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 4 272 71.008 T 31-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein BRM88_11525 13ed677a3bd6d720dffda4f79c71351c 273 Pfam PF03618 Kinase/pyrophosphorylase 7 263 3.9E-71 T 31-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 BRM88_21155 7104a0df5409318ee9373b640195b44b 359 Pfam PF15602 Immunity protein 71 11 167 2.2E-60 T 31-10-2018 IPR028950 Immunity protein 71 BRM88_21155 7104a0df5409318ee9373b640195b44b 359 Pfam PF15584 Immunity protein 72 195 289 2.0E-17 T 31-10-2018 IPR028966 Immunity protein 72 BRM88_24155 5667b8e98a9d798371e25f11ff0d89cb 105 Pfam PF04341 Protein of unknown function, DUF485 14 101 6.8E-33 T 31-10-2018 IPR007436 Protein of unknown function DUF485 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PIRSF PIRSF003161 1 329 3.4E-119 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Gene3D G3DSA:1.10.220.30 1 85 5.5E-21 T 31-10-2018 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 SUPERFAMILY SSF48029 110 321 1.28E-67 T 31-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Pfam PF01706 FliG C-terminal domain 215 320 2.0E-39 T 31-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Gene3D G3DSA:1.10.220.30 86 187 6.8E-29 T 31-10-2018 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 268 294 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 30 56 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 110 133 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 1 17 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 244 264 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 191 216 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 PRINTS PR00954 Flagellar motor switch protein FliG signature 222 242 2.2E-65 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Pfam PF14842 FliG N-terminal domain 1 101 2.5E-32 T 31-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 SUPERFAMILY SSF48029 2 117 4.18E-25 T 31-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Pfam PF14841 FliG middle domain 111 184 1.5E-26 T 31-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 Gene3D G3DSA:1.10.220.30 191 329 2.7E-43 T 31-10-2018 BRM88_13695 36ce3b5c9feefc9a6b14a673d6e997fa 329 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 323 1.6E-102 T 31-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BRM88_21400 5c318a26df040378a7c31ec76027373a 549 SUPERFAMILY SSF52025 119 214 4.58E-8 T 31-10-2018 BRM88_21400 5c318a26df040378a7c31ec76027373a 549 Pfam PF02225 PA domain 130 218 3.0E-7 T 31-10-2018 IPR003137 PA domain BRM88_21400 5c318a26df040378a7c31ec76027373a 549 SUPERFAMILY SSF53187 22 526 3.59E-61 T 31-10-2018 BRM88_21400 5c318a26df040378a7c31ec76027373a 549 Pfam PF04389 Peptidase family M28 298 508 2.2E-47 T 31-10-2018 IPR007484 Peptidase M28 BRM88_21400 5c318a26df040378a7c31ec76027373a 549 Gene3D G3DSA:3.40.630.10 245 527 3.9E-48 T 31-10-2018 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 Gene3D G3DSA:1.10.760.10 185 342 1.3E-72 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 Pfam PF03150 Di-haem cytochrome c peroxidase 36 184 1.6E-36 T 31-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 Gene3D G3DSA:1.10.760.10 37 184 1.3E-72 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 SUPERFAMILY SSF46626 161 340 9.23E-29 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 SUPERFAMILY SSF46626 25 171 1.13E-31 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_00325 97bfd9d66ca33417d43366628d5b5354 348 PIRSF PIRSF000294 27 346 5.2E-62 T 31-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 BRM88_11330 841e1302d5bc8c1a94fdda8742310a98 179 Gene3D G3DSA:3.40.630.30 3 177 3.1E-46 T 31-10-2018 BRM88_11330 841e1302d5bc8c1a94fdda8742310a98 179 Pfam PF13420 Acetyltransferase (GNAT) domain 5 156 1.1E-25 T 31-10-2018 BRM88_11330 841e1302d5bc8c1a94fdda8742310a98 179 SUPERFAMILY SSF55729 1 162 7.38E-30 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 86 326 1.7E-42 T 31-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 Gene3D G3DSA:1.10.40.50 272 343 5.0E-19 T 31-10-2018 BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 Pfam PF03193 RsgA GTPase 96 269 3.1E-47 T 31-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 Gene3D G3DSA:3.40.50.300 100 269 1.7E-44 T 31-10-2018 BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 38 334 31.01 T 31-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BRM88_05560 75f69b956d6e6f887712d474cdcb357d 363 SUPERFAMILY SSF52540 113 326 1.67E-46 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14805 ac2c2846767a317663b5d53ebb24d542 1674 SUPERFAMILY SSF53223 817 1008 1.15E-19 T 31-10-2018 BRM88_14805 ac2c2846767a317663b5d53ebb24d542 1674 PIRSF PIRSF036761 1 1674 0.0 T 31-10-2018 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 BRM88_14805 ac2c2846767a317663b5d53ebb24d542 1674 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 99 1667 0.0 T 31-10-2018 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 BRM88_14805 ac2c2846767a317663b5d53ebb24d542 1674 SUPERFAMILY SSF51735 1012 1280 2.3E-31 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_14805 ac2c2846767a317663b5d53ebb24d542 1674 Pfam PF12466 Glutamate dehydrogenase N terminal 1 95 8.1E-41 T 31-10-2018 IPR024727 Bacterial NAD-glutamate dehydrogenase, N-terminal BRM88_15655 d61413c1672fb6cdfe1e7fb26b4a7740 134 Gene3D G3DSA:1.10.10.10 5 87 2.7E-6 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15655 d61413c1672fb6cdfe1e7fb26b4a7740 134 Pfam PF13730 Helix-turn-helix domain 15 64 3.9E-8 T 31-10-2018 BRM88_04275 4418af44ce3c813c040658e977238c0f 138 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 2.7E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_04275 4418af44ce3c813c040658e977238c0f 138 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 5.6E-8 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_04275 4418af44ce3c813c040658e977238c0f 138 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_03700 05e1cd112451f7eeb6c2bbb911fc3f4e 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_03700 05e1cd112451f7eeb6c2bbb911fc3f4e 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_03700 05e1cd112451f7eeb6c2bbb911fc3f4e 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_17420 f9c66af5663134321a5728351cad0a45 308 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 200 206 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 Gene3D G3DSA:1.10.8.10 12 101 5.2E-7 T 31-10-2018 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 SUPERFAMILY SSF53335 12 289 8.51E-47 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_17420 f9c66af5663134321a5728351cad0a45 308 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 11 286 5.0E-68 T 31-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 Gene3D G3DSA:3.40.50.150 105 283 4.7E-43 T 31-10-2018 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 9 290 9.7E-116 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 2 296 48.556 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 Pfam PF05175 Methyltransferase small domain 131 213 9.5E-15 T 31-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BRM88_17420 f9c66af5663134321a5728351cad0a45 308 PIRSF PIRSF037167 1 303 2.3E-123 T 31-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BRM88_04540 fa679da8a5a32a48d0ce4b555af1a162 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_04540 fa679da8a5a32a48d0ce4b555af1a162 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 Pfam PF01979 Amidohydrolase family 51 430 1.4E-29 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 Gene3D G3DSA:3.20.20.140 56 446 7.4E-185 T 31-10-2018 BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 6 454 6.7E-212 T 31-10-2018 IPR010252 Formiminoglutamate deiminase BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 Gene3D G3DSA:2.30.40.10 14 434 7.4E-185 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 SUPERFAMILY SSF51338 365 453 1.36E-10 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_12705 9c18aae7387bbf802caf7f1f8b21fb56 456 SUPERFAMILY SSF51556 54 378 2.04E-70 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_19945 7339686cfec9b816fab46d306fb54223 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_19945 7339686cfec9b816fab46d306fb54223 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_19945 7339686cfec9b816fab46d306fb54223 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_07660 18490f36d8eb460eb92c6024e912ec57 180 Pfam PF13302 Acetyltransferase (GNAT) domain 22 161 8.6E-9 T 31-10-2018 IPR000182 GNAT domain BRM88_07660 18490f36d8eb460eb92c6024e912ec57 180 SUPERFAMILY SSF55729 19 165 4.25E-17 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_07660 18490f36d8eb460eb92c6024e912ec57 180 Gene3D G3DSA:3.40.630.30 8 177 1.4E-32 T 31-10-2018 BRM88_23505 a296eb33002796b42d0b86efc44df68f 566 SUPERFAMILY SSF49899 377 557 1.19E-41 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BRM88_23505 a296eb33002796b42d0b86efc44df68f 566 SUPERFAMILY SSF75005 52 354 2.09E-84 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_23505 a296eb33002796b42d0b86efc44df68f 566 Gene3D G3DSA:2.60.120.200 379 562 4.6E-42 T 31-10-2018 BRM88_23505 a296eb33002796b42d0b86efc44df68f 566 Gene3D G3DSA:2.115.10.20 51 359 9.8E-88 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_23505 a296eb33002796b42d0b86efc44df68f 566 Pfam PF04616 Glycosyl hydrolases family 43 52 346 3.2E-92 T 31-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 BRM88_04565 951cbfb9e4d13bc4e2718240de7cb835 995 Pfam PF07715 TonB-dependent Receptor Plug Domain 115 233 2.9E-14 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_04565 951cbfb9e4d13bc4e2718240de7cb835 995 Pfam PF00593 TonB dependent receptor 484 992 2.2E-33 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_04565 951cbfb9e4d13bc4e2718240de7cb835 995 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 96 992 9.8E-210 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_04565 951cbfb9e4d13bc4e2718240de7cb835 995 Gene3D G3DSA:2.170.130.10 87 238 5.4E-15 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_04565 951cbfb9e4d13bc4e2718240de7cb835 995 SUPERFAMILY SSF56935 88 992 3.4E-77 T 31-10-2018 BRM88_03040 c0539549ffddba77df54592b90cbeec1 173 Gene3D G3DSA:3.40.630.30 1 173 3.4E-53 T 31-10-2018 BRM88_03040 c0539549ffddba77df54592b90cbeec1 173 SUPERFAMILY SSF55729 9 164 2.66E-32 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_03040 c0539549ffddba77df54592b90cbeec1 173 Pfam PF13420 Acetyltransferase (GNAT) domain 54 156 2.3E-17 T 31-10-2018 BRM88_13790 788e4d71111f8c023a15c7635dbe7b23 294 SUPERFAMILY SSF52540 27 282 1.47E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13790 788e4d71111f8c023a15c7635dbe7b23 294 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 29 247 2.5E-21 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BRM88_13790 788e4d71111f8c023a15c7635dbe7b23 294 PIRSF PIRSF003092 2 292 1.3E-81 T 31-10-2018 IPR025501 ATP binding protein MinD BRM88_13790 788e4d71111f8c023a15c7635dbe7b23 294 Gene3D G3DSA:3.40.50.300 26 268 1.7E-58 T 31-10-2018 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.1E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 Gene3D G3DSA:1.10.10.10 6 95 5.2E-22 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 SUPERFAMILY SSF46785 3 86 2.33E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 Gene3D G3DSA:3.40.190.10 103 283 2.0E-62 T 31-10-2018 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.2E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 SUPERFAMILY SSF53850 93 286 3.98E-37 T 31-10-2018 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 Gene3D G3DSA:3.40.190.10 163 257 2.0E-62 T 31-10-2018 BRM88_07035 5ae023c3011c160c243b25cd13413a47 291 Pfam PF03466 LysR substrate binding domain 92 286 1.3E-38 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_04310 d7471e2336e761f9b22c049f74d1cae4 279 SUPERFAMILY SSF53448 8 245 1.8E-14 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_04310 d7471e2336e761f9b22c049f74d1cae4 279 Gene3D G3DSA:3.90.550.10 7 226 4.4E-6 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 Gene3D G3DSA:1.10.10.10 135 238 4.5E-28 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 SMART SM00448 6 117 8.9E-39 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 Gene3D G3DSA:3.40.50.2300 2 134 1.5E-37 T 31-10-2018 BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 Pfam PF00072 Response regulator receiver domain 8 118 1.6E-28 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 232 9.6E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 SUPERFAMILY SSF46894 131 233 1.13E-24 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 SUPERFAMILY SSF52172 3 137 1.28E-40 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_20650 022720ea5b765ed54b5f9c557bbe9a96 239 SMART SM00862 157 232 6.4E-22 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_11915 dd7b00616fca558873d5dbcb54a27206 98 Pfam PF02303 Helix-destabilising protein 1 82 6.9E-29 T 31-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 BRM88_11915 dd7b00616fca558873d5dbcb54a27206 98 ProDom PD015272 DNA DNA-BINDING SINGLE-STRANDED PHAGE-RELATED HELIX-DESTABILIZING REPLICATION BINDING GPV 3D-STRUCTURE DIRECT 2 84 3.0E-41 T 31-10-2018 IPR003512 Bacteriophage M13, G5P, DNA-binding GO:0003697|GO:0006260 BRM88_11915 dd7b00616fca558873d5dbcb54a27206 98 Gene3D G3DSA:2.40.50.140 1 86 2.1E-22 T 31-10-2018 BRM88_11915 dd7b00616fca558873d5dbcb54a27206 98 SUPERFAMILY SSF50249 1 85 4.63E-23 T 31-10-2018 IPR012340 Nucleic acid-binding, OB-fold BRM88_17935 bbac25435f397ed7c08402109a12ce7b 264 Gene3D G3DSA:3.20.20.70 2 264 3.6E-119 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17935 bbac25435f397ed7c08402109a12ce7b 264 Hamap MF_00443 Thiazole synthase [thiG]. 9 264 42.678 T 31-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BRM88_17935 bbac25435f397ed7c08402109a12ce7b 264 Pfam PF05690 Thiazole biosynthesis protein ThiG 12 258 6.9E-112 T 31-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BRM88_17935 bbac25435f397ed7c08402109a12ce7b 264 SUPERFAMILY SSF110399 8 250 7.06E-89 T 31-10-2018 BRM88_17380 122c1795d264c7fa96959f58e3eaacff 222 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 8 216 38.576 T 31-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BRM88_17380 122c1795d264c7fa96959f58e3eaacff 222 Gene3D G3DSA:3.20.20.70 8 219 3.5E-59 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17380 122c1795d264c7fa96959f58e3eaacff 222 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 11 211 9.7E-40 T 31-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BRM88_17380 122c1795d264c7fa96959f58e3eaacff 222 SUPERFAMILY SSF51366 8 214 2.2E-52 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 Pfam PF01715 IPP transferase 43 292 2.6E-80 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 10 301 6.2E-89 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 Gene3D G3DSA:3.40.50.300 13 299 8.4E-94 T 31-10-2018 BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 SUPERFAMILY SSF52540 11 154 2.1E-19 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 Gene3D G3DSA:1.10.20.140 116 188 8.4E-94 T 31-10-2018 BRM88_15715 e26b0a2331edac3c9b1db4ea2e80edf6 327 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 9 312 29.288 T 31-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BRM88_16735 f43fa208fd8a29d45b3a354f1059666d 95 Gene3D G3DSA:3.20.20.80 36 95 6.3E-10 T 31-10-2018 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 Gene3D G3DSA:3.30.360.10 151 316 4.4E-149 T 31-10-2018 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 SUPERFAMILY SSF55347 151 314 4.17E-73 T 31-10-2018 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 31-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 314 2.4E-64 T 31-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 3.3E-133 T 31-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PIRSF PIRSF000149 1 333 1.8E-129 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 SMART SM00846 3 152 2.0E-98 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 SUPERFAMILY SSF51735 3 168 1.51E-67 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 5.0E-47 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 5.0E-47 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 5.0E-47 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 5.0E-47 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 111 124 5.0E-47 T 31-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 Gene3D G3DSA:3.40.50.720 4 327 4.4E-149 T 31-10-2018 BRM88_06125 0c855e33de19c784dafc0bf8e8890f23 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 2.7E-39 T 31-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 Gene3D G3DSA:3.40.50.7700 1 166 3.6E-71 T 31-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 SUPERFAMILY SSF52255 9 165 3.66E-64 T 31-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 10 163 31.771 T 31-10-2018 IPR033747 Class I PurE BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 Pfam PF00731 AIR carboxylase 10 157 1.1E-61 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 10 164 4.2E-63 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 PIRSF PIRSF001338 5 166 2.0E-65 T 31-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 BRM88_17160 3b47c520da6f9b8c4ce7445ae14d7394 167 SMART SM01001 8 159 1.9E-97 T 31-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BRM88_15375 c79f434ef261dac6357f1e2bd7824a0a 306 PIRSF PIRSF015283 1 306 1.7E-99 T 31-10-2018 IPR016631 Regulatory, RpfE BRM88_15375 c79f434ef261dac6357f1e2bd7824a0a 306 Gene3D G3DSA:3.30.70.2130 143 205 1.4E-5 T 31-10-2018 BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 PIRSF PIRSF006630 8 552 5.7E-182 T 31-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 SUPERFAMILY SSF52402 275 534 5.07E-76 T 31-10-2018 BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 Gene3D G3DSA:3.40.50.620 274 552 1.3E-112 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 Pfam PF02540 NAD synthase 276 525 5.6E-69 T 31-10-2018 IPR022310 NAD/GMP synthase BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 SUPERFAMILY SSF56317 10 251 1.44E-57 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 Gene3D G3DSA:3.60.110.10 6 260 9.0E-82 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 Pfam PF00795 Carbon-nitrogen hydrolase 13 242 6.1E-23 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 TIGRFAM TIGR00552 nadE: NAD+ synthetase 283 532 5.7E-58 T 31-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 BRM88_08250 4959277985ab2b599fc401f8ca26e916 552 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 11 551 28.832 T 31-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BRM88_05285 7f50b4d820c05c85bb7fd55dbd8e5399 565 Pfam PF11394 Protein of unknown function (DUF2875) 104 553 1.0E-171 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 BRM88_23040 039f1fb514c6d111e659619e0bcadf7a 193 Pfam PF03358 NADPH-dependent FMN reductase 6 149 1.5E-27 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BRM88_23040 039f1fb514c6d111e659619e0bcadf7a 193 Gene3D G3DSA:3.40.50.360 2 179 1.1E-41 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_23040 039f1fb514c6d111e659619e0bcadf7a 193 SUPERFAMILY SSF52218 2 186 9.51E-32 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_23040 039f1fb514c6d111e659619e0bcadf7a 193 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 6 177 3.5E-75 T 31-10-2018 IPR019912 FMN reductase, MsuE-like BRM88_13255 8ae989c0c0deb809c6c2692310d49a9e 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 2.0E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_13255 8ae989c0c0deb809c6c2692310d49a9e 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_13255 8ae989c0c0deb809c6c2692310d49a9e 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_10025 f12fe9d6917b307691b4ab1aa0b203a6 416 Gene3D G3DSA:3.30.70.1990 284 362 1.6E-23 T 31-10-2018 BRM88_10025 f12fe9d6917b307691b4ab1aa0b203a6 416 Gene3D G3DSA:1.10.405.20 78 201 1.6E-23 T 31-10-2018 BRM88_10025 f12fe9d6917b307691b4ab1aa0b203a6 416 Pfam PF01593 Flavin containing amine oxidoreductase 13 267 5.5E-16 T 31-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BRM88_10025 f12fe9d6917b307691b4ab1aa0b203a6 416 Gene3D G3DSA:3.50.50.60 6 400 1.6E-23 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_10025 f12fe9d6917b307691b4ab1aa0b203a6 416 SUPERFAMILY SSF51905 5 411 9.32E-52 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 Pfam PF00326 Prolyl oligopeptidase family 565 762 7.8E-43 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 SUPERFAMILY SSF82171 53 512 4.97E-34 T 31-10-2018 BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 Gene3D G3DSA:3.40.50.1820 515 772 1.0E-40 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 176 483 1.3E-48 T 31-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 Gene3D G3DSA:2.140.10.30 133 500 1.4E-80 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_16680 efb24bd4752df1ac96ec5e4b00f4ac3a 781 SUPERFAMILY SSF53474 520 763 1.82E-42 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 404 424 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 601 630 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 199 215 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 257 272 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 146 159 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 559 579 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 735 761 7.8E-51 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 147 158 - T 31-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 SUPERFAMILY SSF51621 18 904 9.89E-258 T 31-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 10 904 17.266 T 31-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 Pfam PF00311 Phosphoenolpyruvate carboxylase 142 904 6.7E-222 T 31-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_20250 d18640535e1eda98ae5f8eb8b8b02d9a 904 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 561 573 - T 31-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 SMART SM00138 16 275 2.4E-78 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 Gene3D G3DSA:3.40.50.150 83 274 1.5E-54 T 31-10-2018 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 112 132 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 77 89 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 38 51 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 215 229 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 234 257 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PRINTS PR00996 Glutamate methyltransferase family signature 144 160 3.5E-36 T 31-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 PIRSF PIRSF000410 2 275 6.3E-89 T 31-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 Gene3D G3DSA:1.10.155.10 6 82 3.5E-21 T 31-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 SUPERFAMILY SSF53335 84 270 1.25E-49 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 SUPERFAMILY SSF47757 5 83 1.24E-18 T 31-10-2018 BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 84 261 3.0E-51 T 31-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BRM88_07625 d44a653e904f01f3c78745ede11cd8b8 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 17 68 1.4E-14 T 31-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BRM88_02670 b62a7258d6d5d13b4c0c58144b3a290e 137 Pfam PF10825 Protein of unknown function (DUF2752) 41 88 3.7E-18 T 31-10-2018 IPR021215 Protein of unknown function DUF2752 BRM88_09955 6786d771f2c8392ef5bc5cd16eb30775 200 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 27 199 2.6E-19 T 31-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 BRM88_09955 6786d771f2c8392ef5bc5cd16eb30775 200 Pfam PF13563 2'-5' RNA ligase superfamily 53 177 9.0E-13 T 31-10-2018 BRM88_09955 6786d771f2c8392ef5bc5cd16eb30775 200 Gene3D G3DSA:3.90.1140.10 22 199 1.2E-31 T 31-10-2018 BRM88_09955 6786d771f2c8392ef5bc5cd16eb30775 200 SUPERFAMILY SSF55144 27 199 5.23E-32 T 31-10-2018 IPR009097 Cyclic phosphodiesterase BRM88_22380 957e9a14112836105cd2c788e67a5478 321 Pfam PF12762 ISXO2-like transposase domain 137 282 3.7E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22380 957e9a14112836105cd2c788e67a5478 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.1E-7 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_22380 957e9a14112836105cd2c788e67a5478 321 SMART SM01126 137 282 2.1E-48 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 Gene3D G3DSA:1.10.1200.10 1 79 1.5E-29 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 8.0E-4 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 SUPERFAMILY SSF47336 2 77 1.57E-23 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 2.3E-36 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.6E-16 T 31-10-2018 IPR009081 Phosphopantetheine binding ACP domain BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.719 T 31-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BRM88_04455 18e2c5c2a99022cea84dfdcbbd572128 79 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 31-10-2018 IPR006162 Phosphopantetheine attachment site BRM88_14285 1cfb299316b9e4b62b8ad9359f8401dd 141 Gene3D G3DSA:3.30.370.10 38 129 1.5E-8 T 31-10-2018 IPR035905 Barstar-like superfamily BRM88_14285 1cfb299316b9e4b62b8ad9359f8401dd 141 SUPERFAMILY SSF52038 40 130 1.26E-22 T 31-10-2018 IPR035905 Barstar-like superfamily BRM88_14285 1cfb299316b9e4b62b8ad9359f8401dd 141 Pfam PF01337 Barstar (barnase inhibitor) 43 125 7.0E-23 T 31-10-2018 IPR000468 Barstar (barnase inhibitor) BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 Pfam PF03471 Transporter associated domain 209 283 3.8E-22 T 31-10-2018 IPR005170 Transporter-associated domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 SUPERFAMILY SSF54631 65 202 6.95E-31 T 31-10-2018 BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 SMART SM00116 141 189 1.9 T 31-10-2018 IPR000644 CBS domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 SMART SM00116 78 127 3.5 T 31-10-2018 IPR000644 CBS domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 SMART SM01091 207 285 1.6E-28 T 31-10-2018 IPR005170 Transporter-associated domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 Gene3D G3DSA:3.30.465.10 196 284 9.7E-29 T 31-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 SUPERFAMILY SSF56176 206 290 3.54E-24 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 Pfam PF00571 CBS domain 137 189 5.0E-5 T 31-10-2018 IPR000644 CBS domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 Pfam PF00571 CBS domain 69 124 2.8E-5 T 31-10-2018 IPR000644 CBS domain BRM88_14635 3b6a657ec70a0e85d57c27e17384ce39 292 Gene3D G3DSA:3.10.580.10 52 195 2.7E-50 T 31-10-2018 BRM88_21735 4cf69ccd5556dc9fe20fef9f52eec78d 297 Gene3D G3DSA:1.20.58.480 21 290 5.1E-108 T 31-10-2018 BRM88_21735 4cf69ccd5556dc9fe20fef9f52eec78d 297 SUPERFAMILY SSF140959 23 282 1.16E-96 T 31-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BRM88_21735 4cf69ccd5556dc9fe20fef9f52eec78d 297 Pfam PF03301 Tryptophan 2,3-dioxygenase 208 281 5.5E-21 T 31-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BRM88_21735 4cf69ccd5556dc9fe20fef9f52eec78d 297 Pfam PF03301 Tryptophan 2,3-dioxygenase 18 144 4.3E-41 T 31-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BRM88_21735 4cf69ccd5556dc9fe20fef9f52eec78d 297 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 17 282 38.8 T 31-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 SMART SM00883 2 94 1.7E-51 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 SUPERFAMILY SSF50129 1 94 4.36E-31 T 31-10-2018 IPR011032 GroES-like superfamily BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 31-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 25.406 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 PRINTS PR00297 10kDa chaperonin signature 3 18 3.6E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 PRINTS PR00297 10kDa chaperonin signature 60 72 3.6E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 PRINTS PR00297 10kDa chaperonin signature 81 94 3.6E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 PRINTS PR00297 10kDa chaperonin signature 25 46 3.6E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 Gene3D G3DSA:2.30.33.40 1 95 7.5E-38 T 31-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 BRM88_22810 1d3a5a843961f4eb2ac9c91943092571 95 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 8.3E-32 T 31-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BRM88_08830 f17f88d39d919738fff03b4600f6a0a7 119 SUPERFAMILY SSF160719 8 99 1.57E-25 T 31-10-2018 BRM88_08830 f17f88d39d919738fff03b4600f6a0a7 119 Pfam PF04965 Gene 25-like lysozyme 14 97 2.2E-12 T 31-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD BRM88_08830 f17f88d39d919738fff03b4600f6a0a7 119 Gene3D G3DSA:3.10.450.40 3 119 4.8E-20 T 31-10-2018 BRM88_10335 a62a08f9427bdd5dc39b476563e2d790 783 Gene3D G3DSA:2.60.40.3110 233 320 8.2E-8 T 31-10-2018 BRM88_10335 a62a08f9427bdd5dc39b476563e2d790 783 Pfam PF13953 PapC C-terminal domain 702 762 1.3E-11 T 31-10-2018 IPR025949 PapC-like, C-terminal domain BRM88_10335 a62a08f9427bdd5dc39b476563e2d790 783 Gene3D G3DSA:2.60.40.2610 605 696 6.5E-12 T 31-10-2018 BRM88_10335 a62a08f9427bdd5dc39b476563e2d790 783 Pfam PF00577 Outer membrane usher protein 197 360 1.1E-9 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BRM88_10335 a62a08f9427bdd5dc39b476563e2d790 783 Pfam PF00577 Outer membrane usher protein 453 692 2.5E-16 T 31-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BRM88_15410 e2ffcf909214bcfc2b3049fff3fb21f2 239 Pfam PF03473 MOSC domain 59 172 4.3E-27 T 31-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BRM88_15410 e2ffcf909214bcfc2b3049fff3fb21f2 239 SUPERFAMILY SSF50800 12 237 2.04E-75 T 31-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BRM88_15410 e2ffcf909214bcfc2b3049fff3fb21f2 239 Pfam PF03475 3-alpha domain 183 223 1.0E-10 T 31-10-2018 IPR005163 3-alpha domain BRM88_15410 e2ffcf909214bcfc2b3049fff3fb21f2 239 Gene3D G3DSA:2.40.33.20 9 239 4.2E-82 T 31-10-2018 BRM88_00665 f50ed105b285189cb40805872f452771 352 SUPERFAMILY SSF46689 20 138 6.09E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_00665 f50ed105b285189cb40805872f452771 352 Gene3D G3DSA:3.30.420.470 144 343 8.6E-7 T 31-10-2018 BRM88_00665 f50ed105b285189cb40805872f452771 352 Pfam PF13358 DDE superfamily endonuclease 180 317 7.3E-30 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_00665 f50ed105b285189cb40805872f452771 352 Pfam PF13592 Winged helix-turn helix 104 162 5.9E-19 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_00665 f50ed105b285189cb40805872f452771 352 Pfam PF13551 Winged helix-turn helix 27 86 3.5E-14 T 31-10-2018 BRM88_09420 61e010f18f19c1918392452701492c30 459 SUPERFAMILY SSF56601 74 412 4.46E-75 T 31-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BRM88_09420 61e010f18f19c1918392452701492c30 459 Pfam PF00144 Beta-lactamase 80 405 4.2E-65 T 31-10-2018 IPR001466 Beta-lactamase-related BRM88_09420 61e010f18f19c1918392452701492c30 459 Gene3D G3DSA:3.40.710.10 74 413 2.6E-78 T 31-10-2018 BRM88_03795 bfdc43a01f51d217c5cef621c6620d8e 171 Pfam PF07977 FabA-like domain 28 157 2.0E-50 T 31-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_03795 bfdc43a01f51d217c5cef621c6620d8e 171 SUPERFAMILY SSF54637 2 169 2.09E-53 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_03795 bfdc43a01f51d217c5cef621c6620d8e 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 171 5.2E-93 T 31-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_03795 bfdc43a01f51d217c5cef621c6620d8e 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 49.269 T 31-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_03795 bfdc43a01f51d217c5cef621c6620d8e 171 Gene3D G3DSA:3.10.129.10 1 171 9.8E-64 T 31-10-2018 BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 216 105.795 T 31-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 SMART SM01007 20 208 5.8E-47 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 22 212 7.9E-72 T 31-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 SUPERFAMILY SSF53639 16 220 4.71E-44 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 22 207 1.3E-38 T 31-10-2018 IPR001303 Class II aldolase/adducin N-terminal BRM88_11145 6c571644a7ec41ed0518c1625ce19965 225 Gene3D G3DSA:3.40.225.10 11 214 4.0E-45 T 31-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BRM88_12125 bd907a8c1c22c5890839ec165a5ee790 266 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 16 256 3.4E-77 T 31-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 BRM88_12125 bd907a8c1c22c5890839ec165a5ee790 266 SUPERFAMILY SSF53448 16 262 6.53E-57 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_12125 bd907a8c1c22c5890839ec165a5ee790 266 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 14 264 39.093 T 31-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 BRM88_12125 bd907a8c1c22c5890839ec165a5ee790 266 Pfam PF02348 Cytidylyltransferase 18 237 1.6E-47 T 31-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 BRM88_12125 bd907a8c1c22c5890839ec165a5ee790 266 Gene3D G3DSA:3.90.550.10 13 263 5.5E-85 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 PIRSF PIRSF002756 4 361 2.6E-105 T 31-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 Gene3D G3DSA:3.40.190.10 126 302 8.5E-128 T 31-10-2018 BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 SUPERFAMILY SSF53850 52 359 1.92E-97 T 31-10-2018 BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 Pfam PF12849 PBP superfamily domain 42 332 2.2E-60 T 31-10-2018 IPR024370 PBP domain BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 52 359 1.9E-124 T 31-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BRM88_13020 effb8453731297e6ecccd2c4d123b7e4 363 Gene3D G3DSA:3.40.190.10 53 349 8.5E-128 T 31-10-2018 BRM88_07980 7c9e71f2044daed26d1d867822c1aef5 133 Pfam PF01124 MAPEG family 10 125 4.6E-21 T 31-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein BRM88_07980 7c9e71f2044daed26d1d867822c1aef5 133 Gene3D G3DSA:1.20.120.550 5 131 1.5E-17 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily BRM88_07980 7c9e71f2044daed26d1d867822c1aef5 133 SUPERFAMILY SSF161084 6 131 8.24E-27 T 31-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily BRM88_07495 d054df8c58791f29dd65c82be734e1e2 315 Pfam PF13503 Domain of unknown function (DUF4123) 68 156 7.6E-8 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 Gene3D G3DSA:3.40.50.880 1 199 1.2E-61 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 Pfam PF00117 Glutamine amidotransferase class-I 6 195 3.5E-19 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 SUPERFAMILY SSF52317 4 197 1.0E-47 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 197 31.368 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 197 5.9E-65 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BRM88_11755 aba302994ab7b0e8feffb74c2910a298 200 PIRSF PIRSF000495 2 199 5.3E-61 T 31-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BRM88_04385 48ec9f4a252ff0681318c072be6f4277 210 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 7 189 1.6E-39 T 31-10-2018 IPR013343 CRISPR-associated protein Cas4 BRM88_04385 48ec9f4a252ff0681318c072be6f4277 210 Pfam PF01930 Domain of unknown function DUF83 9 188 1.7E-34 T 31-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 BRM88_04385 48ec9f4a252ff0681318c072be6f4277 210 Gene3D G3DSA:3.90.320.10 4 191 7.4E-16 T 31-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal BRM88_16720 e078f1d0763c5f839164da4c36e1bf5a 196 Gene3D G3DSA:2.60.220.20 136 196 4.3E-6 T 31-10-2018 BRM88_16720 e078f1d0763c5f839164da4c36e1bf5a 196 Gene3D G3DSA:3.20.20.80 1 135 1.5E-32 T 31-10-2018 BRM88_16720 e078f1d0763c5f839164da4c36e1bf5a 196 SUPERFAMILY SSF51445 4 114 1.26E-7 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_06060 980fad52aec540e401d557236a9804bf 121 Gene3D G3DSA:1.10.10.10 1 67 5.0E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_06060 980fad52aec540e401d557236a9804bf 121 PIRSF PIRSF019455 1 121 9.2E-39 T 31-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BRM88_06060 980fad52aec540e401d557236a9804bf 121 Gene3D G3DSA:1.10.4040.10 68 119 1.1E-10 T 31-10-2018 BRM88_06060 980fad52aec540e401d557236a9804bf 121 Pfam PF03965 Penicillinase repressor 3 115 6.8E-35 T 31-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BRM88_06060 980fad52aec540e401d557236a9804bf 121 SUPERFAMILY SSF46785 1 118 7.27E-28 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 SMART SM00244 63 223 1.1E-34 T 31-10-2018 IPR001107 Band 7 domain BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 Pfam PF01145 SPFH domain / Band 7 family 68 239 5.3E-31 T 31-10-2018 IPR001107 Band 7 domain BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 TIGRFAM TIGR01933 hflK: HflK protein 65 321 6.8E-100 T 31-10-2018 IPR010201 HflK GO:0016021 BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 SUPERFAMILY SSF117892 96 230 4.32E-20 T 31-10-2018 IPR036013 Band 7/SPFH domain superfamily BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 PRINTS PR00721 Stomatin signature 153 170 1.4E-10 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 PRINTS PR00721 Stomatin signature 199 217 1.4E-10 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 PRINTS PR00721 Stomatin signature 118 139 1.4E-10 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 PRINTS PR00721 Stomatin signature 70 92 1.4E-10 T 31-10-2018 IPR001972 Stomatin family GO:0016020 BRM88_04630 cd0283c293ba27bca1fed4acb408f1db 375 Gene3D G3DSA:3.30.479.30 94 225 5.3E-19 T 31-10-2018 BRM88_02395 5bb10595782a9b41074d3c2e3374fa62 108 Gene3D G3DSA:3.40.30.10 2 106 1.3E-15 T 31-10-2018 BRM88_02395 5bb10595782a9b41074d3c2e3374fa62 108 Pfam PF00085 Thioredoxin 6 104 2.8E-10 T 31-10-2018 IPR013766 Thioredoxin domain GO:0045454 BRM88_02395 5bb10595782a9b41074d3c2e3374fa62 108 SUPERFAMILY SSF52833 3 106 3.44E-16 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_24190 9e145791c590b6184acdbcdf519bc751 198 SUPERFAMILY SSF56214 83 193 3.53E-26 T 31-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_24190 9e145791c590b6184acdbcdf519bc751 198 Gene3D G3DSA:3.90.470.20 84 191 1.7E-22 T 31-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_24190 9e145791c590b6184acdbcdf519bc751 198 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 84 170 8.7E-19 T 31-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BRM88_18890 08fa33032ff55e2541e333746154ef0f 254 SUPERFAMILY SSF48317 43 241 5.82E-10 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BRM88_18890 08fa33032ff55e2541e333746154ef0f 254 Pfam PF01569 PAP2 superfamily 109 238 1.0E-8 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_16315 e95de4fedb8dd6695b520b02293163a8 168 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 2.4E-51 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_16315 e95de4fedb8dd6695b520b02293163a8 168 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 161 6.6E-52 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_16315 e95de4fedb8dd6695b520b02293163a8 168 PIRSF PIRSF028301 2 168 1.2E-53 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 Gene3D G3DSA:3.40.50.150 107 311 2.6E-48 T 31-10-2018 BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 304 29.852 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 PIRSF PIRSF000401 1 306 8.6E-90 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 SUPERFAMILY SSF53335 71 300 3.85E-36 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 304 2.6E-87 T 31-10-2018 BRM88_02800 1de86f83292d3e4d99c1aacb928518a3 313 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 297 1.2E-62 T 31-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BRM88_18145 1ae71fff4a420754955adfc126dabf55 334 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 211 221 - T 31-10-2018 IPR029768 Fructose-bisphosphate aldolase class-I active site KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18145 1ae71fff4a420754955adfc126dabf55 334 Pfam PF00274 Fructose-bisphosphate aldolase class-I 6 333 4.6E-137 T 31-10-2018 IPR000741 Fructose-bisphosphate aldolase, class-I GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BRM88_18145 1ae71fff4a420754955adfc126dabf55 334 Gene3D G3DSA:3.20.20.70 2 334 6.5E-150 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_18145 1ae71fff4a420754955adfc126dabf55 334 SUPERFAMILY SSF51569 4 333 5.65E-130 T 31-10-2018 BRM88_12480 d7ac226cfcd119366cd6da4644f5b203 520 Pfam PF00474 Sodium:solute symporter family 39 439 4.2E-71 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BRM88_12480 d7ac226cfcd119366cd6da4644f5b203 520 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 39 439 7.3E-108 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BRM88_12480 d7ac226cfcd119366cd6da4644f5b203 520 Gene3D G3DSA:1.20.1730.10 28 520 7.7E-165 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily BRM88_18280 87608093a43ed8ed8e4d7912db63de94 281 Pfam PF13557 Putative MetA-pathway of phenol degradation 45 281 3.0E-25 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 4 358 3.0E-159 T 31-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 241 325 1.8E-9 T 31-10-2018 IPR023885 4Fe4S-binding SPASM domain BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 Pfam PF13353 4Fe-4S single cluster domain 14 83 7.7E-5 T 31-10-2018 BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 Pfam PF13186 Iron-sulfur cluster-binding domain 238 304 2.8E-11 T 31-10-2018 IPR023885 4Fe4S-binding SPASM domain BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 Gene3D G3DSA:3.20.20.70 5 290 6.5E-41 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 Pfam PF04055 Radical SAM superfamily 13 158 2.2E-17 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 SUPERFAMILY SSF102114 6 313 1.57E-67 T 31-10-2018 BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 PIRSF PIRSF037420 1 352 6.3E-121 T 31-10-2018 IPR017200 Coenzyme PQQ synthesis protein E BRM88_09040 41279ab74f694b6559f0f13a81420b21 372 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 370 172.627 T 31-10-2018 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 BRM88_03855 5f3568f332d244101868895ba70760ee 329 Gene3D G3DSA:3.90.850.10 1 327 1.9E-129 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_03855 5f3568f332d244101868895ba70760ee 329 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 82 323 1.2E-35 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BRM88_03855 5f3568f332d244101868895ba70760ee 329 SUPERFAMILY SSF56529 77 323 2.88E-53 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_15875 e09f8b8d74be214805c122d8946f49c9 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 323 3.5E-134 T 31-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BRM88_15875 e09f8b8d74be214805c122d8946f49c9 333 Gene3D G3DSA:3.20.20.30 2 327 1.8E-92 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BRM88_15875 e09f8b8d74be214805c122d8946f49c9 333 Pfam PF00296 Luciferase-like monooxygenase 17 295 3.6E-35 T 31-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BRM88_15875 e09f8b8d74be214805c122d8946f49c9 333 SUPERFAMILY SSF51679 4 322 6.54E-82 T 31-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 Gene3D G3DSA:3.30.70.1560 128 210 4.3E-48 T 31-10-2018 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 64 223 3.1E-40 T 31-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 Pfam PF00849 RNA pseudouridylate synthase 61 137 1.3E-9 T 31-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 SUPERFAMILY SSF55120 61 225 1.92E-35 T 31-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 Gene3D G3DSA:3.30.70.580 61 226 4.3E-48 T 31-10-2018 BRM88_03520 9a868a8b094e84585b0fe951e8a04c3a 237 Gene3D G3DSA:3.10.290.10 1 54 2.3E-7 T 31-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BRM88_21220 9120c4ef3ffc300012df54d8f6259466 151 SUPERFAMILY SSF53927 7 148 1.47E-34 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_21220 9120c4ef3ffc300012df54d8f6259466 151 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 102 1.2E-15 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BRM88_21220 9120c4ef3ffc300012df54d8f6259466 151 Gene3D G3DSA:3.40.140.10 3 150 4.7E-33 T 31-10-2018 BRM88_07125 2442d1d39838a9b2c08d07e08b97df90 346 Pfam PF00487 Fatty acid desaturase 59 301 1.7E-33 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 Gene3D G3DSA:2.20.25.10 1 40 9.2E-16 T 31-10-2018 BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 SUPERFAMILY SSF82057 40 111 3.43E-24 T 31-10-2018 BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 Pfam PF03831 PhnA domain 43 111 2.6E-30 T 31-10-2018 IPR013988 PhnA protein, C-terminal BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 Pfam PF08274 PhnA Zinc-Ribbon 4 32 2.0E-9 T 31-10-2018 IPR013987 PhnA protein, N-terminal BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 Gene3D G3DSA:2.30.30.40 41 111 1.7E-31 T 31-10-2018 BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 SUPERFAMILY SSF57783 3 36 2.55E-11 T 31-10-2018 BRM88_09910 6da3264b1dfba88fd98d30781a1de93b 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 111 2.5E-30 T 31-10-2018 IPR004624 PhnA protein BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 293 3.8E-146 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 Gene3D G3DSA:3.30.930.10 3 217 6.3E-109 T 31-10-2018 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 SUPERFAMILY SSF55681 10 293 1.24E-131 T 31-10-2018 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 Gene3D G3DSA:1.20.58.180 218 299 4.7E-33 T 31-10-2018 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 294 59.204 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 301 5.0E-158 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23375 5d1c9d9ad6b0f240c5259c90ac7dc9b4 302 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 2.3E-67 T 31-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_02185 3ef01bdddaff640d7ca38f098495bbc8 302 SUPERFAMILY SSF103481 212 290 1.03E-10 T 31-10-2018 BRM88_02185 3ef01bdddaff640d7ca38f098495bbc8 302 TIGRFAM TIGR00688 rarD: protein RarD 11 264 4.8E-61 T 31-10-2018 IPR004626 RarD protein GO:0005887 BRM88_02185 3ef01bdddaff640d7ca38f098495bbc8 302 SUPERFAMILY SSF103481 55 148 1.19E-12 T 31-10-2018 BRM88_02185 3ef01bdddaff640d7ca38f098495bbc8 302 Pfam PF00892 EamA-like transporter family 156 288 2.0E-8 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_02185 3ef01bdddaff640d7ca38f098495bbc8 302 Pfam PF00892 EamA-like transporter family 12 147 3.4E-12 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_04100 641aab263ace02f03194b391bd080ffe 322 Pfam PF01609 Transposase DDE domain 135 310 1.2E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_04100 641aab263ace02f03194b391bd080ffe 322 Pfam PF05598 Transposase domain (DUF772) 50 122 1.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 Gene3D G3DSA:1.25.40.10 263 395 3.2E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 Pfam PF14559 Tetratricopeptide repeat 201 255 1.1E-5 T 31-10-2018 BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 35 678 1.9E-133 T 31-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 SUPERFAMILY SSF48452 201 375 5.18E-13 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 SUPERFAMILY SSF56935 432 548 4.27E-5 T 31-10-2018 BRM88_20880 144e78f14e8618997ea4387e32c76c5c 680 Gene3D G3DSA:1.25.40.10 195 259 5.8E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.6E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.6E-9 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 SMART SM00345 9 68 8.2E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 SUPERFAMILY SSF64288 56 233 1.73E-37 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 Gene3D G3DSA:1.10.10.10 4 72 1.9E-21 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 Pfam PF07702 UTRA domain 89 228 3.2E-28 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 SMART SM00866 89 229 2.1E-32 T 31-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 Gene3D G3DSA:3.40.1410.10 73 235 2.0E-32 T 31-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 68 1.6E-17 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_04320 ef0041dcb666662232eca318ff4654f1 242 SUPERFAMILY SSF46785 3 72 2.82E-19 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_06020 75e7ae6ffc3b79490e138d98c5326ba3 652 Gene3D G3DSA:3.30.750.70 224 278 1.1E-5 T 31-10-2018 BRM88_06020 75e7ae6ffc3b79490e138d98c5326ba3 652 SUPERFAMILY SSF100950 23 260 5.02E-5 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_06020 75e7ae6ffc3b79490e138d98c5326ba3 652 Gene3D G3DSA:3.40.1080.20 403 534 9.9E-27 T 31-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily BRM88_06020 75e7ae6ffc3b79490e138d98c5326ba3 652 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 366 530 8.2E-36 T 31-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BRM88_06020 75e7ae6ffc3b79490e138d98c5326ba3 652 SUPERFAMILY SSF100950 224 539 1.32E-39 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_02330 4a564e499b8193998b117d5465b42e26 647 Gene3D G3DSA:3.40.50.720 61 499 5.1E-174 T 31-10-2018 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 Gene3D G3DSA:3.30.360.10 244 538 5.1E-174 T 31-10-2018 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 244 250 - T 31-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 SUPERFAMILY SSF55347 244 549 1.21E-109 T 31-10-2018 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 256 550 1.8E-107 T 31-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 62 254 2.1E-53 T 31-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 391 417 4.4E-47 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 210 223 4.4E-47 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 304 320 4.4E-47 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 286 303 4.4E-47 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 234 262 4.4E-47 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 SUPERFAMILY SSF51735 50 257 1.83E-54 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02330 4a564e499b8193998b117d5465b42e26 647 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 58 552 77.767 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_02330 4a564e499b8193998b117d5465b42e26 647 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 58 551 1.1E-175 T 31-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 Gene3D G3DSA:3.40.50.720 3 254 7.9E-64 T 31-10-2018 BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 250 5.2E-50 T 31-10-2018 BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 194 0.0036 T 31-10-2018 BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.0E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 3.0E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.0E-6 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 SUPERFAMILY SSF51735 11 251 1.26E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_13645 9cb1313560160451aed3b1ad497ae8d6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 9.4E-29 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 Gene3D G3DSA:3.40.50.10300 208 424 8.9E-74 T 31-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 Gene3D G3DSA:3.40.50.1950 7 193 1.2E-54 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 213 392 7.5E-68 T 31-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 Pfam PF02441 Flavoprotein 14 185 3.9E-43 T 31-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 11 418 2.2E-130 T 31-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 SUPERFAMILY SSF52507 10 184 5.23E-58 T 31-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BRM88_02490 1d05807e126f9ab5861afe116eaf82b6 424 SUPERFAMILY SSF102645 211 423 2.62E-72 T 31-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BRM88_07390 35badf27c9c37374faf4310e39b11eb2 332 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 91 105 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site BRM88_07390 35badf27c9c37374faf4310e39b11eb2 332 Gene3D G3DSA:1.10.600.10 6 332 9.6E-109 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily BRM88_07390 35badf27c9c37374faf4310e39b11eb2 332 Pfam PF00348 Polyprenyl synthetase 41 273 2.0E-76 T 31-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BRM88_07390 35badf27c9c37374faf4310e39b11eb2 332 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 213 225 - T 31-10-2018 IPR033749 Polyprenyl synthetase, conserved site BRM88_07390 35badf27c9c37374faf4310e39b11eb2 332 SUPERFAMILY SSF48576 15 331 2.16E-98 T 31-10-2018 IPR008949 Isoprenoid synthase domain superfamily BRM88_01475 8f199ac554add55e76412948a94649cb 320 SMART SM01126 137 285 3.7E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01475 8f199ac554add55e76412948a94649cb 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01475 8f199ac554add55e76412948a94649cb 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 7.7E-11 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 5 356 6.6E-125 T 31-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 Pfam PF03054 tRNA methyl transferase 5 356 1.7E-125 T 31-10-2018 BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 Gene3D G3DSA:2.40.30.10 278 362 1.4E-28 T 31-10-2018 BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 SUPERFAMILY SSF52402 4 240 8.6E-49 T 31-10-2018 BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 4 357 36.455 T 31-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 Gene3D G3DSA:3.40.50.620 1 207 1.2E-82 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_13460 3f89899968884ff97aeec53e9dc5c80f 378 Gene3D G3DSA:2.30.30.280 209 276 7.2E-23 T 31-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BRM88_16200 2f4630a0a4c393d423e82ce41a7c3f77 342 Pfam PF06812 ImpA, N-terminal, type VI secretion system 9 132 3.4E-29 T 31-10-2018 IPR010657 ImpA, N-terminal BRM88_16200 2f4630a0a4c393d423e82ce41a7c3f77 342 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 6 333 2.0E-64 T 31-10-2018 IPR017740 Type VI secretion system-associated, ImpA BRM88_23300 c72f8ea73a46741b0b6d0b4f6d01267d 103 Pfam PF12365 Protein of unknown function (DUF3649) 71 96 6.0E-7 T 31-10-2018 IPR022109 Protein of unknown function DUF3649 BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 SUPERFAMILY SSF56935 37 791 1.06E-108 T 31-10-2018 BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 172 3.3E-21 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 44 - T 31-10-2018 IPR010916 TonB box, conserved site BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 Gene3D G3DSA:2.170.130.10 33 175 1.3E-34 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 Pfam PF00593 TonB dependent receptor 283 790 8.6E-47 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_07015 da48c956c23a7a0c5d4c470b8cf4dda5 795 Gene3D G3DSA:2.40.170.20 176 771 1.5E-61 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_16250 22b8ee60ee1694808d0e28897d208284 463 SUPERFAMILY SSF49879 25 104 2.3E-19 T 31-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 BRM88_16250 22b8ee60ee1694808d0e28897d208284 463 Gene3D G3DSA:2.60.200.20 17 125 4.1E-17 T 31-10-2018 BRM88_16250 22b8ee60ee1694808d0e28897d208284 463 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 8 449 2.3E-128 T 31-10-2018 IPR017735 Type VI secretion system, FHA domain-containing protein BRM88_16250 22b8ee60ee1694808d0e28897d208284 463 SMART SM00240 32 81 3.9E-6 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BRM88_16250 22b8ee60ee1694808d0e28897d208284 463 Pfam PF00498 FHA domain 34 97 1.5E-13 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BRM88_21580 a785f87862fa95dbbf0a03ed210f8da1 527 SUPERFAMILY SSF51735 169 513 6.62E-28 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_21580 a785f87862fa95dbbf0a03ed210f8da1 527 Gene3D G3DSA:3.40.50.720 161 327 2.5E-16 T 31-10-2018 BRM88_21580 a785f87862fa95dbbf0a03ed210f8da1 527 Gene3D G3DSA:3.40.50.720 362 519 1.5E-16 T 31-10-2018 BRM88_21580 a785f87862fa95dbbf0a03ed210f8da1 527 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 379 478 3.0E-8 T 31-10-2018 BRM88_21580 a785f87862fa95dbbf0a03ed210f8da1 527 Pfam PF00106 short chain dehydrogenase 174 265 5.5E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_16310 4b469c7f81e68d5f46bcfe365d6de549 504 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 75 499 2.0E-188 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_16310 4b469c7f81e68d5f46bcfe365d6de549 504 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 26 499 1.0E-213 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_21850 94ae57c17af036354f9de77d35bcd32e 113 Gene3D G3DSA:1.10.238.10 49 103 5.2E-9 T 31-10-2018 BRM88_21850 94ae57c17af036354f9de77d35bcd32e 113 ProSitePatterns PS00018 EF-hand calcium-binding domain. 82 94 - T 31-10-2018 IPR018247 EF-Hand 1, calcium-binding site BRM88_21850 94ae57c17af036354f9de77d35bcd32e 113 SUPERFAMILY SSF47473 50 99 3.42E-8 T 31-10-2018 IPR011992 EF-hand domain pair BRM88_21850 94ae57c17af036354f9de77d35bcd32e 113 Pfam PF13202 EF hand 55 67 0.017 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_21850 94ae57c17af036354f9de77d35bcd32e 113 Pfam PF13202 EF hand 75 98 4.4E-5 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_22035 b044cf7e5f91b8bf6354b7b46929ab8b 320 PIRSF PIRSF035875 5 296 6.8E-65 T 31-10-2018 IPR017039 Virulence factor BrkB BRM88_22035 b044cf7e5f91b8bf6354b7b46929ab8b 320 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 22 278 7.9E-29 T 31-10-2018 IPR017039 Virulence factor BrkB BRM88_22035 b044cf7e5f91b8bf6354b7b46929ab8b 320 Pfam PF03631 Virulence factor BrkB 32 279 7.1E-51 T 31-10-2018 IPR017039 Virulence factor BrkB BRM88_21730 80220abcbd815310493502a8bf4d410d 502 Gene3D G3DSA:1.20.1250.20 17 502 2.7E-116 T 31-10-2018 BRM88_21730 80220abcbd815310493502a8bf4d410d 502 SUPERFAMILY SSF103473 237 497 2.62E-10 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_21730 80220abcbd815310493502a8bf4d410d 502 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 21 498 4.0E-102 T 31-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BRM88_21730 80220abcbd815310493502a8bf4d410d 502 SUPERFAMILY SSF103473 14 216 9.55E-22 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_21730 80220abcbd815310493502a8bf4d410d 502 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 160 172 - T 31-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BRM88_21730 80220abcbd815310493502a8bf4d410d 502 Pfam PF00854 POT family 103 459 2.7E-54 T 31-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BRM88_02975 b04637004d23353143907deaa2e567c7 157 Hamap MF_00598 Protein Smg [smg]. 5 157 30.815 T 31-10-2018 IPR007456 Smg BRM88_02975 b04637004d23353143907deaa2e567c7 157 Pfam PF04361 Protein of unknown function (DUF494) 5 157 1.1E-55 T 31-10-2018 IPR007456 Smg BRM88_17580 27a3511b7fc00a98d49c6d50564f5f0b 163 Gene3D G3DSA:3.10.129.10 4 154 1.2E-41 T 31-10-2018 BRM88_17580 27a3511b7fc00a98d49c6d50564f5f0b 163 SUPERFAMILY SSF54637 8 156 5.61E-41 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_17580 27a3511b7fc00a98d49c6d50564f5f0b 163 Pfam PF03061 Thioesterase superfamily 22 94 1.3E-17 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 Gene3D G3DSA:2.40.170.20 253 894 3.5E-45 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 Pfam PF00593 TonB dependent receptor 401 893 5.3E-35 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 Gene3D G3DSA:2.170.130.10 28 169 1.0E-16 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 42 894 2.1E-213 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 166 4.2E-15 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_20940 442b6c41bacb1bad311c4a73c601f22c 896 SUPERFAMILY SSF56935 33 894 5.49E-82 T 31-10-2018 BRM88_05370 6ce5eef543ae56c7b848ea68ece1012b 165 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 8 165 31.354 T 31-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05370 6ce5eef543ae56c7b848ea68ece1012b 165 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 10 159 5.5E-51 T 31-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05370 6ce5eef543ae56c7b848ea68ece1012b 165 Pfam PF01967 MoaC family 21 157 6.7E-48 T 31-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05370 6ce5eef543ae56c7b848ea68ece1012b 165 SUPERFAMILY SSF55040 18 160 4.58E-48 T 31-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_05370 6ce5eef543ae56c7b848ea68ece1012b 165 Gene3D G3DSA:3.30.70.640 7 164 3.7E-57 T 31-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BRM88_01120 9b1a0c9db795a68dc9407738aee87b75 205 Pfam PF02698 DUF218 domain 49 192 7.1E-30 T 31-10-2018 IPR003848 Domain of unknown function DUF218 BRM88_01120 9b1a0c9db795a68dc9407738aee87b75 205 Gene3D G3DSA:3.40.50.620 94 175 2.0E-5 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_16780 772b7036172686eb32d7ffafd684fbfe 81 Gene3D G3DSA:3.10.20.440 1 81 2.0E-10 T 31-10-2018 BRM88_16780 772b7036172686eb32d7ffafd684fbfe 81 SUPERFAMILY SSF54292 5 80 4.19E-18 T 31-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BRM88_16780 772b7036172686eb32d7ffafd684fbfe 81 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 80 1.2E-21 T 31-10-2018 BRM88_08350 54443069b9fde0290532667b8b88eae1 247 Gene3D G3DSA:1.10.1740.10 17 116 6.3E-13 T 31-10-2018 BRM88_08350 54443069b9fde0290532667b8b88eae1 247 Pfam PF04542 Sigma-70 region 2 43 94 3.5E-9 T 31-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_08350 54443069b9fde0290532667b8b88eae1 247 SUPERFAMILY SSF88946 18 109 9.42E-16 T 31-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 5 373 2.7E-163 T 31-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 Gene3D G3DSA:3.30.70.360 179 292 1.0E-121 T 31-10-2018 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 SUPERFAMILY SSF55031 179 287 6.13E-29 T 31-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 Gene3D G3DSA:3.40.630.10 7 361 1.0E-121 T 31-10-2018 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 Pfam PF07687 Peptidase dimerisation domain 175 282 3.6E-26 T 31-10-2018 IPR011650 Peptidase M20, dimerisation domain BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 Pfam PF01546 Peptidase family M20/M25/M40 63 371 3.8E-40 T 31-10-2018 IPR002933 Peptidase M20 GO:0016787 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 SUPERFAMILY SSF53187 2 373 7.6E-63 T 31-10-2018 BRM88_10380 c99737196501484b26be4f8bd239ca3a 376 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 375 49.568 T 31-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 Gene3D G3DSA:2.140.10.30 22 482 7.4E-181 T 31-10-2018 IPR038554 Dipeptidylpeptidase IV, N-terminal domain superfamily BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 Pfam PF00326 Prolyl oligopeptidase family 547 740 1.0E-55 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 SUPERFAMILY SSF82171 21 472 4.97E-55 T 31-10-2018 BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 SUPERFAMILY SSF53474 492 740 5.75E-75 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 Gene3D G3DSA:3.40.50.1820 484 742 1.1E-87 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01920 8f1d5c22645e46b95400dc9c7dcb685b 745 Pfam PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region 129 451 8.5E-93 T 31-10-2018 IPR002469 Dipeptidylpeptidase IV, N-terminal domain GO:0006508 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 Gene3D G3DSA:1.10.150.530 22 83 1.2E-24 T 31-10-2018 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 SUPERFAMILY SSF102114 121 351 2.75E-15 T 31-10-2018 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 Pfam PF04055 Radical SAM superfamily 129 300 5.2E-18 T 31-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 21 383 1.7E-132 T 31-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 Gene3D G3DSA:3.20.20.70 85 364 2.3E-104 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 22 379 73.226 T 31-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BRM88_13345 61e2102e4c99068268a5e1654dd6f497 401 PIRSF PIRSF006004 17 392 6.3E-146 T 31-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 BRM88_09140 ac43b832c00765e499643d89be4dfeaf 400 Pfam PF01339 CheB methylesterase 231 365 1.5E-10 T 31-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BRM88_09140 ac43b832c00765e499643d89be4dfeaf 400 Gene3D G3DSA:3.40.50.180 226 368 4.0E-12 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_09140 ac43b832c00765e499643d89be4dfeaf 400 PIRSF PIRSF036592 1 400 1.9E-206 T 31-10-2018 IPR012071 Chemotaxis glutamate methyltransferase BRM88_09140 ac43b832c00765e499643d89be4dfeaf 400 SUPERFAMILY SSF52738 226 398 2.09E-22 T 31-10-2018 IPR035909 Methylesterase CheB, C-terminal BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 31-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 1.7E-32 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 Pfam PF00381 PTS HPr component phosphorylation site 3 82 5.1E-27 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 31-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 SUPERFAMILY SSF55594 1 88 8.11E-27 T 31-10-2018 IPR035895 HPr-like superfamily BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 Gene3D G3DSA:3.30.1340.10 1 88 2.1E-29 T 31-10-2018 IPR035895 HPr-like superfamily BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.0E-16 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.0E-16 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_06550 dd2a7718a9f80df40c4320c4ec3f555e 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.0E-16 T 31-10-2018 IPR000032 Phosphocarrier protein HPr-like BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 Gene3D G3DSA:3.90.79.10 16 151 4.1E-33 T 31-10-2018 BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 SUPERFAMILY SSF55811 13 147 3.38E-31 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 PRINTS PR00502 NUDIX hydrolase family signature 61 76 3.7E-6 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 PRINTS PR00502 NUDIX hydrolase family signature 47 61 3.7E-6 T 31-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 Pfam PF00293 NUDIX domain 19 138 1.1E-19 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_00690 14d1019a7bdd04fc1cc1e30c3ba844b7 156 ProSitePatterns PS00893 Nudix box signature. 52 73 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Pfam PF04607 Region found in RelA / SpoT proteins 255 363 1.4E-32 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Gene3D G3DSA:1.10.3210.10 24 210 3.7E-77 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Pfam PF13291 ACT domain 646 722 7.1E-16 T 31-10-2018 IPR002912 ACT domain BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Gene3D G3DSA:3.10.20.30 401 475 2.6E-27 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Gene3D G3DSA:3.30.70.260 646 723 1.2E-11 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SMART SM00954 255 365 1.8E-58 T 31-10-2018 IPR007685 RelA/SpoT GO:0015969 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SUPERFAMILY SSF81271 395 467 1.24E-18 T 31-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Pfam PF02824 TGS domain 408 467 3.9E-16 T 31-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SUPERFAMILY SSF81301 201 412 4.58E-57 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SUPERFAMILY SSF55021 651 721 1.07E-7 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Gene3D G3DSA:3.30.460.10 214 345 3.4E-41 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SUPERFAMILY SSF109604 26 210 1.07E-70 T 31-10-2018 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 46 718 3.7E-224 T 31-10-2018 IPR004811 RelA/SpoT family GO:0015969 BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 Pfam PF13328 HD domain 46 195 6.6E-51 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_05860 f31629bdd57b8cb720abc6f9a52b7269 723 SMART SM00471 61 173 1.7E-10 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 Gene3D G3DSA:1.10.860.10 26 188 1.3E-54 T 31-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 SUPERFAMILY SSF48024 31 142 9.68E-39 T 31-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 Pfam PF00772 DnaB-like helicase N terminal domain 33 134 2.2E-36 T 31-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 Pfam PF03796 DnaB-like helicase C terminal domain 211 466 8.0E-117 T 31-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 SUPERFAMILY SSF52540 209 459 1.81E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 Gene3D G3DSA:3.40.50.300 194 472 6.7E-109 T 31-10-2018 BRM88_07880 a3560f65d68c0dec3fe3ee293eaea198 476 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 33 468 1.1E-177 T 31-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 BRM88_15290 50d5cbb3c7765609351e464590cc7cee 289 SUPERFAMILY SSF52096 25 265 5.15E-35 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_15290 50d5cbb3c7765609351e464590cc7cee 289 Gene3D G3DSA:3.90.226.10 8 229 1.3E-88 T 31-10-2018 BRM88_15290 50d5cbb3c7765609351e464590cc7cee 289 Pfam PF00378 Enoyl-CoA hydratase/isomerase 126 234 5.6E-19 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_09675 e0784787a0143da623c38353a1723e09 226 SUPERFAMILY SSF69065 10 157 7.67E-44 T 31-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BRM88_09675 e0784787a0143da623c38353a1723e09 226 Pfam PF14622 Ribonuclease-III-like 18 138 4.0E-31 T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BRM88_09675 e0784787a0143da623c38353a1723e09 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 12 221 1.4E-68 T 31-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BRM88_09675 e0784787a0143da623c38353a1723e09 226 SUPERFAMILY SSF54768 108 222 2.04E-25 T 31-10-2018 BRM88_09675 e0784787a0143da623c38353a1723e09 226 Gene3D G3DSA:3.30.160.20 153 224 1.3E-18 T 31-10-2018 BRM88_09675 e0784787a0143da623c38353a1723e09 226 Gene3D G3DSA:1.10.1520.10 9 145 4.3E-38 T 31-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BRM88_09675 e0784787a0143da623c38353a1723e09 226 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BRM88_09675 e0784787a0143da623c38353a1723e09 226 Pfam PF00035 Double-stranded RNA binding motif 155 222 1.5E-11 T 31-10-2018 IPR014720 Double-stranded RNA-binding domain BRM88_09675 e0784787a0143da623c38353a1723e09 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 27.546 T 31-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BRM88_09675 e0784787a0143da623c38353a1723e09 226 SMART SM00535 20 148 1.8E-47 T 31-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BRM88_09675 e0784787a0143da623c38353a1723e09 226 SMART SM00358 155 223 7.8E-19 T 31-10-2018 IPR014720 Double-stranded RNA-binding domain BRM88_20905 9d1395a4f0272abc8bf066868acba061 342 Gene3D G3DSA:3.40.50.10490 199 327 5.5E-42 T 31-10-2018 BRM88_20905 9d1395a4f0272abc8bf066868acba061 342 Gene3D G3DSA:3.40.50.10490 5 195 1.2E-48 T 31-10-2018 BRM88_20905 9d1395a4f0272abc8bf066868acba061 342 Pfam PF01380 SIS domain 49 169 1.3E-19 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BRM88_20905 9d1395a4f0272abc8bf066868acba061 342 Pfam PF01380 SIS domain 204 301 6.4E-15 T 31-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BRM88_20905 9d1395a4f0272abc8bf066868acba061 342 SUPERFAMILY SSF53697 11 340 4.66E-77 T 31-10-2018 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 SUPERFAMILY SSF47928 3 103 2.22E-18 T 31-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 Gene3D G3DSA:1.10.520.20 2 104 2.6E-21 T 31-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 173 8.5E-44 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 PRINTS PR00125 ATP synthase delta subunit signature 133 148 2.2E-21 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 PRINTS PR00125 ATP synthase delta subunit signature 72 83 2.2E-21 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 PRINTS PR00125 ATP synthase delta subunit signature 83 97 2.2E-21 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 PRINTS PR00125 ATP synthase delta subunit signature 7 26 2.2E-21 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 PRINTS PR00125 ATP synthase delta subunit signature 148 166 2.2E-21 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 173 7.9E-33 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03645 fe9b4815ea0be9e02057b608cf545763 175 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 175 17.896 T 31-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_09445 69817536bd52070effbfd3cca6de729c 202 SUPERFAMILY SSF48498 94 189 2.18E-6 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_09445 69817536bd52070effbfd3cca6de729c 202 SUPERFAMILY SSF46689 21 78 5.49E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_09445 69817536bd52070effbfd3cca6de729c 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 2.0E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_09445 69817536bd52070effbfd3cca6de729c 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 2.0E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_09445 69817536bd52070effbfd3cca6de729c 202 Gene3D G3DSA:1.10.357.10 26 201 2.6E-24 T 31-10-2018 BRM88_09445 69817536bd52070effbfd3cca6de729c 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 73 9.1E-15 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 431 3.1E-71 T 31-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 Gene3D G3DSA:3.40.50.300 341 522 5.9E-52 T 31-10-2018 BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 SMART SM00962 343 534 3.1E-55 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 SMART SM00382 342 536 4.1E-12 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 SUPERFAMILY SSF52540 340 529 2.85E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_13785 5d297e7358f4edd31afe3b32b54c2833 552 Pfam PF00448 SRP54-type protein, GTPase domain 345 532 5.2E-38 T 31-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 Pfam PF00294 pfkB family carbohydrate kinase 10 301 8.4E-56 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 254 267 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 PIRSF PIRSF000535 2 317 2.0E-104 T 31-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 Gene3D G3DSA:3.40.1190.20 5 318 5.3E-89 T 31-10-2018 IPR029056 Ribokinase-like BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 6 314 1.1E-89 T 31-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BRM88_14850 8cb7e57921b2c2155a33ae98bf83e72c 318 SUPERFAMILY SSF53613 6 298 3.43E-59 T 31-10-2018 IPR029056 Ribokinase-like BRM88_07060 754f5e73bc449f7db681f9f9da9fb1e9 263 SMART SM00862 157 234 1.9E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_07060 754f5e73bc449f7db681f9f9da9fb1e9 263 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 234 1.4E-18 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_07060 754f5e73bc449f7db681f9f9da9fb1e9 263 Gene3D G3DSA:1.10.10.10 135 251 1.3E-25 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_07060 754f5e73bc449f7db681f9f9da9fb1e9 263 SUPERFAMILY SSF46894 135 235 8.5E-23 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_07060 754f5e73bc449f7db681f9f9da9fb1e9 263 SUPERFAMILY SSF52172 32 178 4.54E-8 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_17465 36e3741062a69fd3e862ffccd280b31a 405 Pfam PF01694 Rhomboid family 65 216 1.1E-24 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BRM88_17465 36e3741062a69fd3e862ffccd280b31a 405 SUPERFAMILY SSF144091 60 221 7.19E-30 T 31-10-2018 BRM88_17465 36e3741062a69fd3e862ffccd280b31a 405 Gene3D G3DSA:1.20.1540.10 45 223 2.0E-24 T 31-10-2018 IPR035952 Rhomboid-like superfamily BRM88_04190 327c99e1cbe6d87f273d646f4684e009 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 348 1.5E-70 T 31-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 BRM88_04190 327c99e1cbe6d87f273d646f4684e009 360 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 4 349 1.6E-112 T 31-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 BRM88_12245 3a75cd52b2709a820df22b6a037c5557 239 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 16 228 5.0E-38 T 31-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 BRM88_12245 3a75cd52b2709a820df22b6a037c5557 239 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 16 226 3.6E-43 T 31-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 BRM88_12245 3a75cd52b2709a820df22b6a037c5557 239 Gene3D G3DSA:3.40.50.1360 10 239 3.7E-53 T 31-10-2018 BRM88_12245 3a75cd52b2709a820df22b6a037c5557 239 SUPERFAMILY SSF100950 10 230 4.55E-44 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_24110 855c0ceef9c5d5c121cc51446198e252 365 Pfam PF04616 Glycosyl hydrolases family 43 48 308 2.9E-69 T 31-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 BRM88_24110 855c0ceef9c5d5c121cc51446198e252 365 SUPERFAMILY SSF75005 48 308 6.89E-58 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_24110 855c0ceef9c5d5c121cc51446198e252 365 Gene3D G3DSA:2.115.10.20 47 312 4.4E-56 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_01835 feb76a806da5bdb4e0717b45ff573786 331 SUPERFAMILY SSF52540 6 238 2.51E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01835 feb76a806da5bdb4e0717b45ff573786 331 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_01835 feb76a806da5bdb4e0717b45ff573786 331 SMART SM00382 36 227 2.2E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_01835 feb76a806da5bdb4e0717b45ff573786 331 Pfam PF00005 ABC transporter 27 171 1.5E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_01835 feb76a806da5bdb4e0717b45ff573786 331 Gene3D G3DSA:3.40.50.300 3 237 9.9E-61 T 31-10-2018 BRM88_01715 15cf55f9f21ad3adcbb14274cd7134f4 129 SUPERFAMILY SSF51182 2 108 3.96E-16 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_01715 15cf55f9f21ad3adcbb14274cd7134f4 129 Gene3D G3DSA:2.60.120.10 1 129 3.2E-39 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_01715 15cf55f9f21ad3adcbb14274cd7134f4 129 Pfam PF07883 Cupin domain 22 93 6.1E-12 T 31-10-2018 IPR013096 Cupin 2, conserved barrel BRM88_05415 a4dc45ca434185caf7e20dd9380b10b7 177 PIRSF PIRSF004982 1 177 2.1E-51 T 31-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BRM88_05415 a4dc45ca434185caf7e20dd9380b10b7 177 Pfam PF03843 Outer membrane lipoprotein Slp family 15 162 4.5E-45 T 31-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BRM88_05415 a4dc45ca434185caf7e20dd9380b10b7 177 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 12 176 6.2E-28 T 31-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 BRM88_10735 8001f518f3d8ebd9fb7d07c6e68ac076 120 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 2.1E-13 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_10735 8001f518f3d8ebd9fb7d07c6e68ac076 120 SMART SM00345 16 75 8.6E-11 T 31-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BRM88_10735 8001f518f3d8ebd9fb7d07c6e68ac076 120 Gene3D G3DSA:1.10.10.10 9 117 4.2E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_10735 8001f518f3d8ebd9fb7d07c6e68ac076 120 SUPERFAMILY SSF46785 5 79 1.34E-18 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 Gene3D G3DSA:3.40.605.10 27 461 1.4E-145 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 Pfam PF00171 Aldehyde dehydrogenase family 25 480 9.5E-141 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 278 289 - T 31-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 Gene3D G3DSA:3.40.309.10 253 453 1.4E-145 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 SUPERFAMILY SSF53720 5 487 6.81E-144 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_09610 e0e7d3d92affa9aa1b6490cad7e3d898 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 484 5.2E-221 T 31-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Gene3D G3DSA:1.10.8.60 8 240 3.0E-101 T 31-10-2018 BRM88_05395 1efb9b374254d3f932655280218cf365 698 SMART SM00382 37 188 1.8E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_05395 1efb9b374254d3f932655280218cf365 698 Gene3D G3DSA:1.20.272.10 242 359 2.1E-36 T 31-10-2018 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Pfam PF13177 DNA polymerase III, delta subunit 20 178 3.4E-45 T 31-10-2018 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 359 3.6E-24 T 31-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 BRM88_05395 1efb9b374254d3f932655280218cf365 698 SUPERFAMILY SSF52540 34 223 1.22E-57 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05395 1efb9b374254d3f932655280218cf365 698 SUPERFAMILY SSF48019 243 360 1.7E-28 T 31-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Gene3D G3DSA:3.30.300.150 563 678 4.2E-13 T 31-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_05395 1efb9b374254d3f932655280218cf365 698 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 2.0E-5 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_05395 1efb9b374254d3f932655280218cf365 698 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 2.0E-5 T 31-10-2018 IPR001270 ClpA/B family GO:0005524 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 573 693 7.5E-12 T 31-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_05395 1efb9b374254d3f932655280218cf365 698 Gene3D G3DSA:3.40.50.300 13 177 3.0E-101 T 31-10-2018 BRM88_05395 1efb9b374254d3f932655280218cf365 698 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 353 7.3E-125 T 31-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 BRM88_16530 90d0c22dddfc9206887d01872973d9a8 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_16530 90d0c22dddfc9206887d01872973d9a8 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.4E-11 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_16530 90d0c22dddfc9206887d01872973d9a8 320 SMART SM01126 137 285 2.9E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_11190 23bd0a9974c77a4d3c3dea46f3d24c6d 339 Gene3D G3DSA:1.25.40.10 72 212 8.2E-24 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_11190 23bd0a9974c77a4d3c3dea46f3d24c6d 339 Pfam PF13432 Tetratricopeptide repeat 70 122 6.4E-7 T 31-10-2018 BRM88_11190 23bd0a9974c77a4d3c3dea46f3d24c6d 339 Pfam PF13432 Tetratricopeptide repeat 144 179 0.0014 T 31-10-2018 BRM88_11190 23bd0a9974c77a4d3c3dea46f3d24c6d 339 SUPERFAMILY SSF48452 81 207 4.27E-16 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_08195 a370ecd972b310ec1a3f4426ae7fd0dd 219 Gene3D G3DSA:1.20.1250.20 20 219 2.3E-5 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 SUPERFAMILY SSF111369 190 319 6.41E-12 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Gene3D G3DSA:1.10.287.470 115 142 6.6E-15 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Gene3D G3DSA:2.40.30.170 264 385 3.8E-37 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Pfam PF13533 Biotin-lipoyl like 81 129 2.9E-16 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 SUPERFAMILY SSF111369 80 170 8.63E-13 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Gene3D G3DSA:2.40.50.100 80 114 6.6E-15 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Gene3D G3DSA:1.10.287.470 143 225 8.0E-6 T 31-10-2018 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 379 2.9E-6 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 92 112 2.9E-6 T 31-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BRM88_14685 97bc4b2725ab9e17b713550c8617f560 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 191 323 2.3E-14 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_17210 e982b02e375bab3b515faf92369ee811 196 Gene3D G3DSA:3.30.300.70 1 86 1.3E-19 T 31-10-2018 IPR035956 RimP, N-terminal domain superfamily BRM88_17210 e982b02e375bab3b515faf92369ee811 196 Pfam PF02576 RimP N-terminal domain 11 89 2.5E-27 T 31-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal BRM88_17210 e982b02e375bab3b515faf92369ee811 196 Pfam PF17384 RimP C-terminal SH3 domain 92 159 2.1E-19 T 31-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal BRM88_17210 e982b02e375bab3b515faf92369ee811 196 SUPERFAMILY SSF75420 5 89 7.45E-21 T 31-10-2018 IPR035956 RimP, N-terminal domain superfamily BRM88_17210 e982b02e375bab3b515faf92369ee811 196 SUPERFAMILY SSF74942 90 159 2.48E-13 T 31-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily BRM88_17210 e982b02e375bab3b515faf92369ee811 196 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 159 24.13 T 31-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 SUPERFAMILY SSF56645 7 233 1.57E-72 T 31-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Gene3D G3DSA:1.10.540.10 2 129 1.4E-36 T 31-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 381 4.4E-28 T 31-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 16 127 3.9E-30 T 31-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 SUPERFAMILY SSF47203 238 385 3.06E-38 T 31-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Gene3D G3DSA:1.20.140.10 235 387 1.3E-35 T 31-10-2018 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Gene3D G3DSA:2.40.110.10 131 234 9.5E-34 T 31-10-2018 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 134 146 - T 31-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BRM88_07855 cd1cb0dab865e7beeadd5e0b694150fb 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 222 7.7E-22 T 31-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BRM88_15010 3d4cbe42877e958414b39d42c8f72bfc 225 Pfam PF16162 Domain of unknown function (DUF4868) 27 212 4.0E-15 T 31-10-2018 IPR032359 Protein of unknown function DUF4868 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 Gene3D G3DSA:3.40.190.290 91 293 3.5E-44 T 31-10-2018 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 Pfam PF03466 LysR substrate binding domain 88 289 6.5E-45 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 Gene3D G3DSA:1.10.10.10 1 84 5.5E-27 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 SUPERFAMILY SSF46785 1 111 2.54E-24 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.3E-20 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.5E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.5E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.5E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_04735 ea718bfd6f6d26d3a5c07e759592460d 294 SUPERFAMILY SSF53850 90 292 5.21E-45 T 31-10-2018 BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 SUPERFAMILY SSF64182 48 455 1.44E-103 T 31-10-2018 IPR038763 DHH phosphoesterase superfamily BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 Pfam PF02272 DHHA1 domain 320 452 3.0E-23 T 31-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 Gene3D G3DSA:3.90.1640.30 49 324 6.3E-81 T 31-10-2018 BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 Gene3D G3DSA:3.10.310.30 326 459 2.6E-28 T 31-10-2018 BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 25 570 2.2E-134 T 31-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 BRM88_15370 99dfa0c5f40f3dd473b3a523704bc17a 579 Pfam PF01368 DHH family 74 201 3.8E-9 T 31-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 28.745 T 31-10-2018 IPR007551 Protein of unknown function DUF520 BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 SUPERFAMILY SSF89963 90 161 3.14E-26 T 31-10-2018 IPR036183 YajQ-like superfamily BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 7.3E-61 T 31-10-2018 IPR007551 Protein of unknown function DUF520 BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 SUPERFAMILY SSF89963 2 85 1.07E-28 T 31-10-2018 IPR036183 YajQ-like superfamily BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 Gene3D G3DSA:3.30.70.860 96 161 3.5E-30 T 31-10-2018 IPR035571 UPF0234-like, C-terminal BRM88_03555 c4f2e00c55c9d48e15c3e1d41d294b8b 161 Gene3D G3DSA:3.30.70.990 9 95 2.1E-32 T 31-10-2018 IPR035570 UPF0234, N-terminal BRM88_03905 462e2aa23b850c1ae7efefa3aba71bdc 308 SUPERFAMILY SSF53756 6 302 1.47E-30 T 31-10-2018 BRM88_03905 462e2aa23b850c1ae7efefa3aba71bdc 308 Gene3D G3DSA:3.40.50.2000 102 282 3.3E-25 T 31-10-2018 BRM88_03905 462e2aa23b850c1ae7efefa3aba71bdc 308 Pfam PF00534 Glycosyl transferases group 1 127 271 5.0E-14 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_03905 462e2aa23b850c1ae7efefa3aba71bdc 308 Gene3D G3DSA:3.40.50.2000 7 298 3.3E-25 T 31-10-2018 BRM88_18335 b295e177bc4850b21a32dc17f29ed6e1 200 Gene3D G3DSA:3.40.50.300 44 157 2.4E-35 T 31-10-2018 BRM88_18335 b295e177bc4850b21a32dc17f29ed6e1 200 PIRSF PIRSF037290 1 199 1.7E-81 T 31-10-2018 IPR017166 Uncharacterised conserved protein UCP037290 BRM88_18335 b295e177bc4850b21a32dc17f29ed6e1 200 SUPERFAMILY SSF52540 45 158 9.98E-31 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 SUPERFAMILY SSF53335 78 384 3.82E-68 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 Gene3D G3DSA:3.30.750.80 72 178 5.4E-25 T 31-10-2018 BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 Gene3D G3DSA:2.30.130.10 9 70 1.4E-17 T 31-10-2018 IPR036974 PUA domain superfamily GO:0003723 BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 SUPERFAMILY SSF88697 12 69 6.96E-11 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 SMART SM00359 6 87 0.0053 T 31-10-2018 IPR002478 PUA domain GO:0003723 BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 Gene3D G3DSA:3.40.50.150 179 388 1.9E-68 T 31-10-2018 BRM88_24595 4e6a6d510b9c372db0591ebea373eabf 388 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 169 309 8.3E-19 T 31-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BRM88_02495 47d4a2cb55fdc00fc11d477ac04a879a 155 Pfam PF00692 dUTPase 21 153 2.3E-33 T 31-10-2018 IPR029054 dUTPase-like BRM88_02495 47d4a2cb55fdc00fc11d477ac04a879a 155 Gene3D G3DSA:2.70.40.10 2 153 1.4E-46 T 31-10-2018 IPR036157 dUTPase-like superfamily BRM88_02495 47d4a2cb55fdc00fc11d477ac04a879a 155 TIGRFAM TIGR00576 dut: dUTP diphosphatase 21 153 3.0E-44 T 31-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 BRM88_02495 47d4a2cb55fdc00fc11d477ac04a879a 155 SUPERFAMILY SSF51283 9 154 1.07E-48 T 31-10-2018 IPR036157 dUTPase-like superfamily BRM88_02495 47d4a2cb55fdc00fc11d477ac04a879a 155 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 10 154 32.705 T 31-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 Hamap MF_00524 Glucokinase [glk]. 7 326 33.408 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 Gene3D G3DSA:3.40.367.20 106 309 2.3E-96 T 31-10-2018 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 TIGRFAM TIGR00749 glk: glucokinase 9 320 4.9E-80 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 Pfam PF02685 Glucokinase 9 324 1.6E-111 T 31-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 SUPERFAMILY SSF53067 8 326 6.76E-60 T 31-10-2018 BRM88_12240 66eb05a1c04904436e4c7748ebb7c952 335 Gene3D G3DSA:3.30.420.40 8 320 2.3E-96 T 31-10-2018 BRM88_18955 ca4600f655e916d0990ab764c5fb3b52 356 Pfam PF11876 Protein of unknown function (DUF3396) 120 326 7.4E-41 T 31-10-2018 IPR021815 Protein of unknown function DUF3396 BRM88_01075 878d3277a17ef982da1a230397c64e32 87 Pfam PF05488 PAAR motif 9 77 2.6E-17 T 31-10-2018 IPR008727 PAAR motif BRM88_01075 878d3277a17ef982da1a230397c64e32 87 Gene3D G3DSA:2.60.200.60 6 83 6.8E-8 T 31-10-2018 BRM88_19520 8ee0dcf0155a498ab981ede7b4022a2a 192 SUPERFAMILY SSF52317 1 170 5.5E-29 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_19520 8ee0dcf0155a498ab981ede7b4022a2a 192 Gene3D G3DSA:3.40.50.880 1 188 5.0E-33 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_19520 8ee0dcf0155a498ab981ede7b4022a2a 192 Pfam PF01965 DJ-1/PfpI family 4 168 2.0E-17 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BRM88_08925 ec2ca73ac29c30745adf019c775a139d 340 PIRSF PIRSF018494 3 340 1.7E-143 T 31-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria BRM88_08925 ec2ca73ac29c30745adf019c775a139d 340 Pfam PF04860 Phage portal protein 91 314 5.5E-10 T 31-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein BRM88_08925 ec2ca73ac29c30745adf019c775a139d 340 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 49 327 1.9E-65 T 31-10-2018 IPR006430 Phage portal protein PBSX family BRM88_23120 27e20787567a614a69706975cd712caf 295 Gene3D G3DSA:3.40.190.10 164 269 2.1E-60 T 31-10-2018 BRM88_23120 27e20787567a614a69706975cd712caf 295 Gene3D G3DSA:3.40.190.10 91 286 2.1E-60 T 31-10-2018 BRM88_23120 27e20787567a614a69706975cd712caf 295 Gene3D G3DSA:1.10.10.10 1 90 3.2E-31 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_23120 27e20787567a614a69706975cd712caf 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23120 27e20787567a614a69706975cd712caf 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23120 27e20787567a614a69706975cd712caf 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.3E-9 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23120 27e20787567a614a69706975cd712caf 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.6E-23 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_23120 27e20787567a614a69706975cd712caf 295 SUPERFAMILY SSF46785 1 85 1.58E-23 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_23120 27e20787567a614a69706975cd712caf 295 Pfam PF03466 LysR substrate binding domain 87 291 2.1E-41 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_23120 27e20787567a614a69706975cd712caf 295 SUPERFAMILY SSF53850 88 291 1.49E-35 T 31-10-2018 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 SUPERFAMILY SSF55021 119 207 5.64E-18 T 31-10-2018 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 Gene3D G3DSA:3.30.70.260 51 117 1.6E-8 T 31-10-2018 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 Pfam PF13740 ACT domain 36 109 7.9E-14 T 31-10-2018 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 Gene3D G3DSA:3.30.70.260 119 204 9.3E-16 T 31-10-2018 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 PIRSF PIRSF028103 33 208 1.2E-68 T 31-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 BRM88_15555 ef5e40ddd00061f956c907112f17e66e 208 SUPERFAMILY SSF55021 32 115 1.42E-9 T 31-10-2018 BRM88_20895 9ce3cbced1060d03ac7e39c5c1e7cbac 201 Pfam PF13994 PgaD-like protein 21 154 9.7E-26 T 31-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BRM88_20895 9ce3cbced1060d03ac7e39c5c1e7cbac 201 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 94 152 3.0E-4 T 31-10-2018 BRM88_20895 9ce3cbced1060d03ac7e39c5c1e7cbac 201 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 19 157 7.4E-50 T 31-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BRM88_06720 28715f361f5e41ef1331fcfb7fffbf4b 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.1E-8 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_06720 28715f361f5e41ef1331fcfb7fffbf4b 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_06720 28715f361f5e41ef1331fcfb7fffbf4b 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 Pfam PF01979 Amidohydrolase family 51 430 1.6E-19 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 ProSitePatterns PS00483 Dihydroorotase signature 2. 313 324 - T 31-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 Gene3D G3DSA:2.30.40.10 6 431 3.2E-136 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 SUPERFAMILY SSF51556 55 377 8.17E-91 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 Gene3D G3DSA:3.20.20.140 56 416 3.2E-136 T 31-10-2018 BRM88_14135 d3ee586fd55a71377cdf64e5a2fc66bb 449 SUPERFAMILY SSF51338 1 440 1.32E-31 T 31-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BRM88_17635 3a559afd3762c9202f1180fafa58b74a 455 Pfam PF01523 Putative modulator of DNA gyrase 39 331 2.1E-61 T 31-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 BRM88_17635 3a559afd3762c9202f1180fafa58b74a 455 SUPERFAMILY SSF111283 21 454 5.36E-125 T 31-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 BRM88_17635 3a559afd3762c9202f1180fafa58b74a 455 Gene3D G3DSA:3.30.2290.10 8 239 3.4E-86 T 31-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal BRM88_04680 93ec89acb943ed1a05f2b9438d610480 177 Pfam PF10882 Bacterial PH domain 78 166 2.5E-6 T 31-10-2018 IPR027783 Bacterial Pleckstrin homology domain-related BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 19 408 1.8E-116 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 PIRSF PIRSF004640 12 419 3.6E-124 T 31-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 Gene3D G3DSA:3.20.20.20 16 302 1.1E-93 T 31-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 17 413 28.717 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 Gene3D G3DSA:3.30.413.10 303 420 3.2E-35 T 31-10-2018 BRM88_11605 91a3006d3d1b9cd37ede47929d4adb0f 421 Pfam PF04551 GcpE protein 22 409 4.3E-107 T 31-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.5E-122 T 31-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 SUPERFAMILY SSF50331 253 375 1.19E-14 T 31-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 SUPERFAMILY SSF52540 20 257 4.26E-83 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 Pfam PF00005 ABC transporter 36 177 5.9E-34 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 SMART SM00382 44 232 2.2E-16 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 Gene3D G3DSA:2.40.50.940 239 301 4.5E-11 T 31-10-2018 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 Gene3D G3DSA:2.40.50.140 302 352 4.5E-11 T 31-10-2018 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 Pfam PF08402 TOBE domain 296 375 8.4E-20 T 31-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BRM88_14670 7c45e9f83e3edcda023e8ce8bb03ea3d 415 Gene3D G3DSA:3.40.50.300 19 238 4.9E-65 T 31-10-2018 BRM88_19670 3e9eff207c352d185bc0f9ef31269934 777 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 760 777 - T 31-10-2018 IPR010917 TonB-dependent receptor, conserved site BRM88_19670 3e9eff207c352d185bc0f9ef31269934 777 SUPERFAMILY SSF56935 44 777 5.29E-89 T 31-10-2018 BRM88_19670 3e9eff207c352d185bc0f9ef31269934 777 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 165 5.1E-10 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_19670 3e9eff207c352d185bc0f9ef31269934 777 Pfam PF00593 TonB dependent receptor 249 776 1.0E-37 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_19670 3e9eff207c352d185bc0f9ef31269934 777 Gene3D G3DSA:2.170.130.10 45 179 2.0E-9 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_05550 99a4d8069e76d41c1b2fe4e3cd452548 212 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 12 188 9.3E-25 T 31-10-2018 IPR013830 SGNH hydrolase-type esterase domain BRM88_05550 99a4d8069e76d41c1b2fe4e3cd452548 212 Gene3D G3DSA:3.40.50.1110 9 200 5.7E-24 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_05550 99a4d8069e76d41c1b2fe4e3cd452548 212 SUPERFAMILY SSF52266 7 198 4.58E-28 T 31-10-2018 BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 Gene3D G3DSA:3.40.50.300 6 236 4.9E-42 T 31-10-2018 BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 SMART SM00382 53 224 7.2E-14 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 SUPERFAMILY SSF52540 29 224 3.03E-44 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 Gene3D G3DSA:2.70.50.60 279 422 5.5E-14 T 31-10-2018 BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 Pfam PF14524 Wzt C-terminal domain 285 421 8.6E-25 T 31-10-2018 IPR029439 Wzt, C-terminal BRM88_03950 0775dce5f84be4b034bf0ef2827307cf 437 Pfam PF00005 ABC transporter 44 176 1.2E-20 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_07815 b755ce1fffd58d8ff2366a64d20af422 161 Pfam PF04306 Protein of unknown function (DUF456) 23 158 9.0E-42 T 31-10-2018 IPR007403 Protein of unknown function DUF456 BRM88_21290 5807e502fd42fa3962f52e74ce8da558 226 Gene3D G3DSA:3.30.450.40 46 224 4.7E-44 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_21290 5807e502fd42fa3962f52e74ce8da558 226 Pfam PF04340 Protein of unknown function, DUF484 7 226 9.0E-66 T 31-10-2018 IPR007435 Protein of unknown function DUF484 BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 Pfam PF12838 4Fe-4S dicluster domain 62 115 5.7E-12 T 31-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 SUPERFAMILY SSF54862 36 145 8.37E-25 T 31-10-2018 BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 19 139 3.2E-44 T 31-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 63 74 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 10 159 26.536 T 31-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 102 113 - T 31-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BRM88_17245 b52953b048787e908193a70bb05b9ec2 162 Gene3D G3DSA:3.30.70.3270 36 161 3.5E-35 T 31-10-2018 BRM88_05835 f3299a1a5269ecbe1c089a23ddc4597d 286 Pfam PF08340 Domain of unknown function (DUF1732) 202 286 4.8E-35 T 31-10-2018 IPR013551 Domain of unknown function DUF1732 BRM88_05835 f3299a1a5269ecbe1c089a23ddc4597d 286 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 286 8.0E-81 T 31-10-2018 IPR005229 Conserved hypothetical protein CHP00255 BRM88_05835 f3299a1a5269ecbe1c089a23ddc4597d 286 Pfam PF03755 YicC-like family, N-terminal region 2 152 4.4E-35 T 31-10-2018 IPR013527 YicC-like, N-terminal BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 Gene3D G3DSA:1.10.3720.10 283 478 5.7E-31 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 22 274 1.8E-59 T 31-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 312 482 9.6E-23 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 Gene3D G3DSA:3.40.190.10 24 274 4.0E-76 T 31-10-2018 BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 SUPERFAMILY SSF161098 288 472 2.75E-34 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 SUPERFAMILY SSF53850 22 274 8.69E-56 T 31-10-2018 BRM88_23960 1cebe0286dfb51afa0df10fb2cbf6447 490 Gene3D G3DSA:3.40.190.120 118 219 4.0E-76 T 31-10-2018 BRM88_05825 7577c43f750f8f4cf0aa4645e2bd0ca7 131 SUPERFAMILY SSF54593 3 129 1.01E-26 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_05825 7577c43f750f8f4cf0aa4645e2bd0ca7 131 Gene3D G3DSA:3.10.180.10 1 131 3.9E-32 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_05825 7577c43f750f8f4cf0aa4645e2bd0ca7 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 1.9E-9 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_18835 992023669a1a223955f66046d7875160 213 SMART SM00421 150 207 1.0E-25 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 SUPERFAMILY SSF52172 1 133 2.99E-35 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_18835 992023669a1a223955f66046d7875160 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 167 194 - T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 SUPERFAMILY SSF46894 145 212 3.74E-22 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 Pfam PF00072 Response regulator receiver domain 4 115 1.1E-29 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_18835 992023669a1a223955f66046d7875160 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 1.0E-20 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 167 2.1E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 167 183 2.1E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 183 195 2.1E-15 T 31-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BRM88_18835 992023669a1a223955f66046d7875160 213 SMART SM00448 2 115 3.6E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_18835 992023669a1a223955f66046d7875160 213 Gene3D G3DSA:3.40.50.12740 2 213 1.4E-71 T 31-10-2018 BRM88_01885 2f46693d6ce33b0a8f6d4290d8d6b3ed 521 Pfam PF04820 Tryptophan halogenase 16 465 2.0E-188 T 31-10-2018 IPR006905 Flavin-dependent halogenase BRM88_01885 2f46693d6ce33b0a8f6d4290d8d6b3ed 521 SUPERFAMILY SSF51905 16 425 6.4E-31 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_01885 2f46693d6ce33b0a8f6d4290d8d6b3ed 521 PIRSF PIRSF011396 10 502 3.7E-183 T 31-10-2018 IPR033856 Flavin-dependent tryptophan halogenase BRM88_01885 2f46693d6ce33b0a8f6d4290d8d6b3ed 521 Gene3D G3DSA:3.50.50.60 14 497 2.3E-177 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_24300 b5f7b659f63da6a9a4ebfe0874b6cbc7 471 Pfam PF13520 Amino acid permease 26 437 8.1E-56 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_24300 b5f7b659f63da6a9a4ebfe0874b6cbc7 471 PIRSF PIRSF006060 6 468 1.3E-84 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_24300 b5f7b659f63da6a9a4ebfe0874b6cbc7 471 Gene3D G3DSA:1.20.1740.10 22 470 3.3E-110 T 31-10-2018 BRM88_07745 e29359d96f6b845665e3017137906df0 195 Gene3D G3DSA:3.40.630.30 13 195 1.4E-10 T 31-10-2018 BRM88_07745 e29359d96f6b845665e3017137906df0 195 SUPERFAMILY SSF55729 19 138 2.48E-12 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_18345 68d9ba9fb01bac331ed7d36d3e4f7273 73 Gene3D G3DSA:2.10.260.10 1 71 3.3E-5 T 31-10-2018 BRM88_18345 68d9ba9fb01bac331ed7d36d3e4f7273 73 SMART SM00966 6 51 5.5E-6 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BRM88_18345 68d9ba9fb01bac331ed7d36d3e4f7273 73 SUPERFAMILY SSF89447 1 63 9.59E-12 T 31-10-2018 IPR037914 SpoVT-AbrB domain superfamily BRM88_18345 68d9ba9fb01bac331ed7d36d3e4f7273 73 TIGRFAM TIGR02609 doc_partner: putative addiction module antidote 3 72 2.0E-24 T 31-10-2018 IPR013432 Putative addiction module antidote BRM88_18345 68d9ba9fb01bac331ed7d36d3e4f7273 73 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 46 6.2E-6 T 31-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BRM88_04800 135376a73224ad928ea2ea75be990894 297 Gene3D G3DSA:1.10.10.60 168 278 3.9E-22 T 31-10-2018 BRM88_04800 135376a73224ad928ea2ea75be990894 297 Pfam PF12833 Helix-turn-helix domain 195 273 9.2E-18 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_04800 135376a73224ad928ea2ea75be990894 297 SMART SM00342 189 272 4.3E-16 T 31-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BRM88_04800 135376a73224ad928ea2ea75be990894 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 31-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BRM88_04800 135376a73224ad928ea2ea75be990894 297 SUPERFAMILY SSF46689 225 276 1.03E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_24395 8ce5f2b9521609fb5a769d7ea27eaf8c 116 Pfam PF13670 Peptidase propeptide and YPEB domain 9 85 2.0E-10 T 31-10-2018 IPR025711 PepSY domain BRM88_23165 950b9d63f410302053b1ab6a4ab55e23 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_23165 950b9d63f410302053b1ab6a4ab55e23 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_23165 950b9d63f410302053b1ab6a4ab55e23 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.6E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_24085 c414af4699c6fc024b6e7640fd61c099 285 SUPERFAMILY SSF56529 60 279 3.14E-85 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_24085 c414af4699c6fc024b6e7640fd61c099 285 Gene3D G3DSA:3.90.850.10 67 283 2.0E-89 T 31-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BRM88_24085 c414af4699c6fc024b6e7640fd61c099 285 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 278 4.3E-74 T 31-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 20 208 2.9E-18 T 31-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 Gene3D G3DSA:3.30.70.1020 100 175 1.5E-46 T 31-10-2018 BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 Gene3D G3DSA:3.40.50.1000 20 235 1.5E-46 T 31-10-2018 IPR023214 HAD superfamily BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 SUPERFAMILY SSF56784 19 248 6.2E-40 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 Pfam PF02358 Trehalose-phosphatase 21 235 2.0E-34 T 31-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 BRM88_08290 eea4d43e69fd118b41a17bb862662fe5 252 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 19 247 4.2E-39 T 31-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 BRM88_13380 983278edc986f1716dd50ef90d8cc4fe 135 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 7 124 16.516 T 31-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BRM88_13380 983278edc986f1716dd50ef90d8cc4fe 135 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 9 119 1.9E-18 T 31-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BRM88_21965 af16d514c206a194c692ffc88b9fce61 392 SUPERFAMILY SSF50952 25 366 1.96E-43 T 31-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BRM88_21965 af16d514c206a194c692ffc88b9fce61 392 Gene3D G3DSA:2.120.10.30 36 383 4.5E-103 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_21965 af16d514c206a194c692ffc88b9fce61 392 Pfam PF07995 Glucose / Sorbosone dehydrogenase 48 372 4.5E-125 T 31-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase BRM88_17430 e8cad3eb7426a3fc4861e57194135f35 282 Pfam PF02666 Phosphatidylserine decarboxylase 61 277 5.4E-53 T 31-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BRM88_17430 e8cad3eb7426a3fc4861e57194135f35 282 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 8 280 45.632 T 31-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 BRM88_17430 e8cad3eb7426a3fc4861e57194135f35 282 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 47 278 2.6E-59 T 31-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BRM88_07005 006f7bbf4ba5ca293e641b90726da8e2 146 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 128 2.8E-9 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_07005 006f7bbf4ba5ca293e641b90726da8e2 146 Gene3D G3DSA:3.10.180.10 1 134 1.5E-28 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_07005 006f7bbf4ba5ca293e641b90726da8e2 146 SUPERFAMILY SSF54593 12 133 1.05E-17 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_13965 eb3656f40da27a33df8bc64ed032600f 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.1E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_13965 eb3656f40da27a33df8bc64ed032600f 321 SMART SM01126 137 282 2.9E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_13965 eb3656f40da27a33df8bc64ed032600f 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_09070 96de2d7113dd53978322b762eb8b02f2 480 SUPERFAMILY SSF48452 139 318 1.99E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_15145 5b5a6445d5faf1bdf2ac0da229f35208 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_15145 5b5a6445d5faf1bdf2ac0da229f35208 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_15145 5b5a6445d5faf1bdf2ac0da229f35208 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_12080 381dd5d71344173497b6ef2bd75dab56 299 SUPERFAMILY SSF53098 146 289 6.53E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_12080 381dd5d71344173497b6ef2bd75dab56 299 Pfam PF00665 Integrase core domain 155 247 1.6E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 Gene3D G3DSA:3.90.45.10 1 171 2.9E-62 T 31-10-2018 IPR036821 Peptide deformylase superfamily BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 Pfam PF01327 Polypeptide deformylase 3 157 8.8E-43 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 Hamap MF_00163 Peptide deformylase [def]. 1 170 24.42 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 159 1.5E-32 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 PRINTS PR01576 Peptide deformylase signature 33 62 2.5E-28 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 PRINTS PR01576 Peptide deformylase signature 128 157 2.5E-28 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 PRINTS PR01576 Peptide deformylase signature 109 127 2.5E-28 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 PRINTS PR01576 Peptide deformylase signature 97 108 2.5E-28 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 PIRSF PIRSF004749 1 165 1.1E-41 T 31-10-2018 IPR023635 Peptide deformylase BRM88_05450 38565aeb5ed18ecb9633ebd41e057ce2 171 SUPERFAMILY SSF56420 1 164 2.75E-52 T 31-10-2018 IPR036821 Peptide deformylase superfamily BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 282 1.6E-75 T 31-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 Gene3D G3DSA:3.40.50.720 401 562 3.2E-38 T 31-10-2018 BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 Pfam PF02254 TrkA-N domain 404 513 2.5E-26 T 31-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 Gene3D G3DSA:1.20.1530.20 6 381 7.2E-80 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 SUPERFAMILY SSF51735 402 535 3.94E-30 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_02345 91a8ca8d2d40710a5ce2e2837d4c005b 605 Pfam PF00999 Sodium/hydrogen exchanger family 10 371 5.4E-61 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BRM88_19490 99a089b72c8a851f347820d7dfa950d6 143 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 58 131 8.4E-13 T 31-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BRM88_19490 99a089b72c8a851f347820d7dfa950d6 143 SUPERFAMILY SSF54534 56 122 3.14E-12 T 31-10-2018 BRM88_19490 99a089b72c8a851f347820d7dfa950d6 143 Gene3D G3DSA:3.10.50.30 52 143 1.6E-21 T 31-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BRM88_19490 99a089b72c8a851f347820d7dfa950d6 143 PIRSF PIRSF006092 34 135 1.7E-18 T 31-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BRM88_19490 99a089b72c8a851f347820d7dfa950d6 143 Pfam PF14760 Rnk N-terminus 15 50 2.3E-7 T 31-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain BRM88_03315 d02bd3ebc390e64b00e8ab2b7d7c2c55 331 Pfam PF00248 Aldo/keto reductase family 17 310 1.7E-74 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_03315 d02bd3ebc390e64b00e8ab2b7d7c2c55 331 SUPERFAMILY SSF51430 1 312 3.8E-101 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_03315 d02bd3ebc390e64b00e8ab2b7d7c2c55 331 Gene3D G3DSA:3.20.20.100 1 330 7.9E-122 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_11705 bd496ad7b468a78eeea27816b1cf74e9 247 Pfam PF13645 L,D-transpeptidase catalytic domain 50 219 1.0E-65 T 31-10-2018 IPR032676 Putative L,D-transpeptidase tautomerase BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 325 7.0E-138 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 191 210 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 245 261 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 300 319 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 270 285 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 122 136 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 5.2E-57 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 SUPERFAMILY SSF51569 2 328 1.47E-140 T 31-10-2018 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 PIRSF PIRSF001415 1 329 5.5E-148 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 245 257 - T 31-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 Gene3D G3DSA:3.20.20.70 1 330 6.2E-143 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_01945 4d315b886b409bfa57e1cf37d2fb45c2 330 SMART SM01004 3 326 7.5E-236 T 31-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 332 344 - T 31-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 Gene3D G3DSA:3.40.350.10 4 157 2.1E-52 T 31-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 3 440 54.977 T 31-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 Gene3D G3DSA:3.90.230.10 159 438 7.0E-72 T 31-10-2018 BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 Pfam PF00557 Metallopeptidase family M24 167 427 5.8E-41 T 31-10-2018 IPR000994 Peptidase M24 BRM88_05800 2bbb0e9b0cf7ba14fc110dedcd37c416 441 SUPERFAMILY SSF55920 161 435 6.8E-53 T 31-10-2018 IPR036005 Creatinase/aminopeptidase-like BRM88_09545 683df54fbcee97e843ae3c5376f519c0 220 Pfam PF04264 YceI-like domain 27 190 4.6E-37 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_09545 683df54fbcee97e843ae3c5376f519c0 220 Gene3D G3DSA:2.40.128.110 26 194 1.8E-45 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_09545 683df54fbcee97e843ae3c5376f519c0 220 SUPERFAMILY SSF101874 24 193 2.09E-47 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_09545 683df54fbcee97e843ae3c5376f519c0 220 SMART SM00867 26 191 1.6E-52 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_10215 1da9975138492f805f4f667738005c75 245 Gene3D G3DSA:3.40.50.300 2 236 7.6E-51 T 31-10-2018 BRM88_10215 1da9975138492f805f4f667738005c75 245 Pfam PF00005 ABC transporter 25 165 3.3E-21 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_10215 1da9975138492f805f4f667738005c75 245 SMART SM00382 31 216 2.0E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_10215 1da9975138492f805f4f667738005c75 245 SUPERFAMILY SSF52540 6 224 9.55E-49 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03825 012fe177b9d085610f11418dafed93ec 224 Pfam PF13500 AAA domain 5 213 9.8E-39 T 31-10-2018 BRM88_03825 012fe177b9d085610f11418dafed93ec 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 177 1.4E-48 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BRM88_03825 012fe177b9d085610f11418dafed93ec 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 216 27.849 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BRM88_03825 012fe177b9d085610f11418dafed93ec 224 PIRSF PIRSF006755 3 221 2.3E-76 T 31-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BRM88_03825 012fe177b9d085610f11418dafed93ec 224 SUPERFAMILY SSF52540 1 219 2.7E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03825 012fe177b9d085610f11418dafed93ec 224 Gene3D G3DSA:3.40.50.300 5 222 6.9E-69 T 31-10-2018 BRM88_20115 60a56d803eba49dc77862dc5d3865534 275 SUPERFAMILY SSF52540 7 241 1.87E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_20115 60a56d803eba49dc77862dc5d3865534 275 Pfam PF00005 ABC transporter 26 167 5.1E-26 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_20115 60a56d803eba49dc77862dc5d3865534 275 Gene3D G3DSA:3.40.50.300 3 264 2.5E-55 T 31-10-2018 BRM88_20115 60a56d803eba49dc77862dc5d3865534 275 SMART SM00382 34 215 2.9E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 Pfam PF16859 Bacterial transcriptional repressor C-terminal 79 165 1.3E-8 T 31-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 SUPERFAMILY SSF46689 5 74 7.48E-14 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 Gene3D G3DSA:1.10.10.60 1 61 1.4E-13 T 31-10-2018 BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 SUPERFAMILY SSF48498 79 202 1.1E-13 T 31-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 5.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 5.3E-6 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 Gene3D G3DSA:1.10.357.10 68 208 1.8E-25 T 31-10-2018 BRM88_14810 bff47fc2cf2c967d28ff9920250a7852 219 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 62 1.3E-9 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_05355 77eb9665a7b9ba287895672167acb6b7 249 SMART SM00849 19 192 0.0065 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_05355 77eb9665a7b9ba287895672167acb6b7 249 SUPERFAMILY SSF56281 6 215 1.83E-26 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_05355 77eb9665a7b9ba287895672167acb6b7 249 Gene3D G3DSA:3.60.15.10 12 240 3.5E-23 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_05355 77eb9665a7b9ba287895672167acb6b7 249 Pfam PF12706 Beta-lactamase superfamily domain 32 189 1.3E-13 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_11620 303f80f2aebbb6ecc8e8c171f3a7e6cf 387 Pfam PF07690 Major Facilitator Superfamily 23 245 6.1E-21 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_11620 303f80f2aebbb6ecc8e8c171f3a7e6cf 387 Gene3D G3DSA:1.20.1250.20 1 386 1.4E-51 T 31-10-2018 BRM88_11620 303f80f2aebbb6ecc8e8c171f3a7e6cf 387 ProSitePatterns PS00217 Sugar transport proteins signature 2. 88 113 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_11620 303f80f2aebbb6ecc8e8c171f3a7e6cf 387 SUPERFAMILY SSF103473 20 386 9.02E-53 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_05935 f794509c14f8ab217aa67a044235bbe4 344 Pfam PF13551 Winged helix-turn helix 18 77 2.9E-14 T 31-10-2018 BRM88_05935 f794509c14f8ab217aa67a044235bbe4 344 Pfam PF13592 Winged helix-turn helix 96 153 2.9E-17 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_05935 f794509c14f8ab217aa67a044235bbe4 344 Pfam PF13358 DDE superfamily endonuclease 171 307 1.6E-29 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_05935 f794509c14f8ab217aa67a044235bbe4 344 SUPERFAMILY SSF46689 11 129 1.29E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_05935 f794509c14f8ab217aa67a044235bbe4 344 Gene3D G3DSA:3.30.420.470 133 334 2.7E-7 T 31-10-2018 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 Pfam PF05746 DALR anticodon binding domain 637 730 1.4E-7 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 585 4.7E-192 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 320 336 1.6E-29 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 396 415 1.6E-29 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 248 263 1.6E-29 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 53 65 1.6E-29 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 8 21 1.6E-29 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 SUPERFAMILY SSF109604 351 489 2.09E-15 T 31-10-2018 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 4 743 24.368 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 6 514 5.3E-167 T 31-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BRM88_23370 2743a5cbb889857d63c28e3886a9c24d 745 SMART SM00836 640 743 9.9E-4 T 31-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BRM88_15320 82799fba37e1b5e9ee1c4eedaf8813b6 315 SMART SM00850 205 302 4.1E-27 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BRM88_15320 82799fba37e1b5e9ee1c4eedaf8813b6 315 Gene3D G3DSA:2.40.50.1020 194 304 4.7E-9 T 31-10-2018 BRM88_15320 82799fba37e1b5e9ee1c4eedaf8813b6 315 Pfam PF04397 LytTr DNA-binding domain 208 300 1.2E-21 T 31-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BRM88_15320 82799fba37e1b5e9ee1c4eedaf8813b6 315 PIRSF PIRSF031767 10 315 4.7E-117 T 31-10-2018 IPR012379 LytTR MHYE transcriptional regulator, putative BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 Gene3D G3DSA:1.20.1610.10 475 637 7.6E-256 T 31-10-2018 BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 Gene3D G3DSA:2.70.98.10 48 384 7.6E-256 T 31-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 43 765 7.9E-203 T 31-10-2018 IPR005887 Alpha-1,2-mannosidase, putative BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 Pfam PF07971 Glycosyl hydrolase family 92 277 761 1.1E-172 T 31-10-2018 IPR012939 Glycosyl hydrolase family 92 BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 Gene3D G3DSA:1.20.1050.60 385 474 7.6E-256 T 31-10-2018 BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 Gene3D G3DSA:3.30.2080.10 331 765 7.6E-256 T 31-10-2018 BRM88_09240 3f8c8201f8cdd1029eead2ca74b48308 780 SUPERFAMILY SSF48208 296 759 4.25E-27 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_04835 4afe60a574dc20027b37f723b4306807 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_04835 4afe60a574dc20027b37f723b4306807 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_04835 4afe60a574dc20027b37f723b4306807 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01790 4afe60a574dc20027b37f723b4306807 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_01790 4afe60a574dc20027b37f723b4306807 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_01790 4afe60a574dc20027b37f723b4306807 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05775 d4258a6a7f9b6e9aecb8cc49d0f6cc2e 180 Pfam PF03695 Uncharacterised protein family (UPF0149) 15 167 6.6E-28 T 31-10-2018 IPR011978 Uncharacterised protein family UPF0149 BRM88_05775 d4258a6a7f9b6e9aecb8cc49d0f6cc2e 180 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 2 180 30.56 T 31-10-2018 IPR011978 Uncharacterised protein family UPF0149 BRM88_05775 d4258a6a7f9b6e9aecb8cc49d0f6cc2e 180 Gene3D G3DSA:1.20.120.740 1 177 3.9E-49 T 31-10-2018 BRM88_05775 d4258a6a7f9b6e9aecb8cc49d0f6cc2e 180 SUPERFAMILY SSF101327 4 168 6.02E-39 T 31-10-2018 IPR036255 YgfB-like superfamily BRM88_12140 c1698818838c1fb4cb95d9207a5ff3d5 154 Gene3D G3DSA:3.30.420.270 61 132 1.4E-11 T 31-10-2018 BRM88_12140 c1698818838c1fb4cb95d9207a5ff3d5 154 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 135 1.3E-30 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BRM88_16970 403c498e303f694496bdd32728e542bd 380 Pfam PF13439 Glycosyltransferase Family 4 14 179 6.4E-17 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BRM88_16970 403c498e303f694496bdd32728e542bd 380 Gene3D G3DSA:3.40.50.2000 1 186 3.5E-24 T 31-10-2018 BRM88_16970 403c498e303f694496bdd32728e542bd 380 Gene3D G3DSA:3.40.50.2000 187 346 1.0E-29 T 31-10-2018 BRM88_16970 403c498e303f694496bdd32728e542bd 380 Pfam PF00534 Glycosyl transferases group 1 190 331 6.2E-24 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_16970 403c498e303f694496bdd32728e542bd 380 SUPERFAMILY SSF53756 2 370 8.9E-60 T 31-10-2018 BRM88_14775 40348b413d0b8a9b7b25f96eccfe427c 284 SUPERFAMILY SSF109709 156 217 3.27E-5 T 31-10-2018 BRM88_14775 40348b413d0b8a9b7b25f96eccfe427c 284 Gene3D G3DSA:1.20.5.340 156 284 1.1E-5 T 31-10-2018 BRM88_05555 3b1d10b55b6a7d50631eba3ed35f0183 423 Pfam PF00155 Aminotransferase class I and II 39 391 1.2E-49 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_05555 3b1d10b55b6a7d50631eba3ed35f0183 423 SUPERFAMILY SSF53383 10 405 1.45E-90 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_05555 3b1d10b55b6a7d50631eba3ed35f0183 423 Gene3D G3DSA:3.40.640.10 58 299 8.8E-122 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_05555 3b1d10b55b6a7d50631eba3ed35f0183 423 Gene3D G3DSA:3.90.1150.10 28 402 8.8E-122 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_22925 e1ec74db1d57908a8039521c90428298 324 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 92 250 3.2E-7 T 31-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BRM88_22925 e1ec74db1d57908a8039521c90428298 324 PIRSF PIRSF028561 1 320 9.6E-169 T 31-10-2018 IPR014548 Predicted acyltransferase BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 Pfam PF02913 FAD linked oxidases, C-terminal domain 225 457 2.0E-66 T 31-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 Pfam PF01565 FAD binding domain 43 182 1.0E-43 T 31-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 Gene3D G3DSA:3.30.70.2740 336 417 1.1E-16 T 31-10-2018 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 Gene3D G3DSA:3.30.465.40 20 230 5.8E-74 T 31-10-2018 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 SUPERFAMILY SSF56176 9 217 4.35E-71 T 31-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 SUPERFAMILY SSF55103 192 460 9.16E-63 T 31-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BRM88_20485 6c9be46779b3e2024184ddd79e9c2b25 461 Gene3D G3DSA:1.10.45.10 418 458 6.5E-17 T 31-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 165 183 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 93 117 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 194 213 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 19 44 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 136 148 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 66 89 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 315 336 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 428 449 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 350 368 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 245 266 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 378 397 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 PRINTS PR01165 Cytochrome c oxidase subunit I signature 291 306 4.3E-124 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 Gene3D G3DSA:1.20.210.10 5 526 1.1E-214 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 28 469 1.5E-148 T 31-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 20 521 2.3E-207 T 31-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 247 301 - T 31-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_22115 696679c54c5702bace8c3a5f11764061 534 SUPERFAMILY SSF81442 17 522 1.44E-188 T 31-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 Pfam PF00005 ABC transporter 398 551 6.6E-35 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 SUPERFAMILY SSF52540 371 621 1.88E-74 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 SMART SM00382 406 597 9.4E-19 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 ProSitePatterns PS00211 ABC transporters family signature. 523 537 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 Gene3D G3DSA:3.40.50.300 371 624 1.1E-79 T 31-10-2018 BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 Gene3D G3DSA:1.20.1560.10 13 364 6.2E-18 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_12370 f3090dee927ae78f297ecbc1f445c627 626 SUPERFAMILY SSF90123 31 343 3.92E-27 T 31-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BRM88_08865 88b2a49ff71383cacd35587720b43dda 148 Pfam PF05069 Phage virion morphogenesis family 3 147 1.2E-40 T 31-10-2018 IPR006522 Phage virion morphogensis protein BRM88_08865 88b2a49ff71383cacd35587720b43dda 148 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 147 1.9E-31 T 31-10-2018 IPR006522 Phage virion morphogensis protein BRM88_02335 0642fe0d4cb851b2869f458912def50c 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.5E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_02335 0642fe0d4cb851b2869f458912def50c 439 SUPERFAMILY SSF53098 18 403 1.67E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_05735 8d816af193eafbc1c4a39365153257e8 293 SUPERFAMILY SSF48452 204 278 9.07E-11 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05735 8d816af193eafbc1c4a39365153257e8 293 Gene3D G3DSA:1.25.40.10 180 288 9.9E-12 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05735 8d816af193eafbc1c4a39365153257e8 293 Pfam PF13369 Transglutaminase-like superfamily 60 209 9.4E-45 T 31-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 BRM88_05735 8d816af193eafbc1c4a39365153257e8 293 Pfam PF13371 Tetratricopeptide repeat 211 282 4.1E-19 T 31-10-2018 BRM88_22585 088187b47e199477f4eb845378cc0264 380 Pfam PF05598 Transposase domain (DUF772) 50 122 3.9E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_22585 088187b47e199477f4eb845378cc0264 380 Pfam PF01609 Transposase DDE domain 135 310 2.6E-31 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 Gene3D G3DSA:3.30.420.10 2 195 1.1E-63 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 Pfam PF00929 Exonuclease 7 185 2.0E-22 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 PIRSF PIRSF000977 1 481 9.1E-175 T 31-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 Gene3D G3DSA:1.20.1280.70 357 417 6.7E-23 T 31-10-2018 BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 SMART SM00479 4 197 2.1E-4 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 Gene3D G3DSA:2.30.30.450 208 347 1.1E-39 T 31-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 SUPERFAMILY SSF53098 2 477 2.85E-114 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_12865 e93e6e9dd628ee2d8fdfc5b16fd69be0 481 Pfam PF08411 Exonuclease C-terminal 206 474 5.2E-92 T 31-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 59 73 - T 31-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 Pfam PF00825 Ribonuclease P 10 115 2.3E-25 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 Gene3D G3DSA:3.30.230.10 7 118 1.0E-27 T 31-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 SUPERFAMILY SSF54211 10 116 4.8E-25 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 62 108 5.0E-20 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 14 116 1.9E-19 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BRM88_24645 283d4409e9bb7461a499ae1a2e62f3e6 145 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 10 118 18.102 T 31-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 31-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.8E-22 T 31-10-2018 IPR003004 GspF/PilC family BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.8E-22 T 31-10-2018 IPR003004 GspF/PilC family BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.8E-22 T 31-10-2018 IPR003004 GspF/PilC family BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.8E-22 T 31-10-2018 IPR003004 GspF/PilC family BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 Gene3D G3DSA:1.20.81.30 260 370 3.7E-24 T 31-10-2018 BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 Pfam PF00482 Type II secretion system (T2SS), protein F 71 194 9.0E-31 T 31-10-2018 IPR018076 Type II secretion system F domain BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 Pfam PF00482 Type II secretion system (T2SS), protein F 275 396 5.8E-26 T 31-10-2018 IPR018076 Type II secretion system F domain BRM88_04260 6f66091e681c88da7dfb9a1a97e22237 405 Gene3D G3DSA:1.20.81.30 57 173 4.0E-27 T 31-10-2018 BRM88_22490 a62f64171d28dc992df95f6ce858b2dd 556 SUPERFAMILY SSF56801 6 514 8.5E-85 T 31-10-2018 BRM88_22490 a62f64171d28dc992df95f6ce858b2dd 556 Pfam PF00501 AMP-binding enzyme 15 444 1.5E-63 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_22490 a62f64171d28dc992df95f6ce858b2dd 556 Gene3D G3DSA:3.40.50.12780 2 439 2.6E-79 T 31-10-2018 BRM88_22490 a62f64171d28dc992df95f6ce858b2dd 556 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 31-10-2018 IPR020845 AMP-binding, conserved site BRM88_05375 ae02861b24b779dd191c0bb5395d1fe1 81 Gene3D G3DSA:3.10.20.30 4 81 8.2E-20 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_05375 ae02861b24b779dd191c0bb5395d1fe1 81 SUPERFAMILY SSF54285 5 81 4.86E-17 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BRM88_05375 ae02861b24b779dd191c0bb5395d1fe1 81 Pfam PF02597 ThiS family 7 81 1.0E-16 T 31-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BRM88_22920 e1fdb472d3dc687c17dcc04ba98f5418 215 Gene3D G3DSA:2.50.20.10 30 193 2.3E-7 T 31-10-2018 BRM88_12105 4c411fa26d56ee6943486c2d173e26eb 210 PIRSF PIRSF000847 1 200 2.6E-43 T 31-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BRM88_12105 4c411fa26d56ee6943486c2d173e26eb 210 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_12105 4c411fa26d56ee6943486c2d173e26eb 210 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 71 5.3E-17 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_12105 4c411fa26d56ee6943486c2d173e26eb 210 Gene3D G3DSA:1.20.120.1760 2 157 3.0E-15 T 31-10-2018 BRM88_12105 4c411fa26d56ee6943486c2d173e26eb 210 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 191 1.5E-52 T 31-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 SUPERFAMILY SSF51735 14 255 2.29E-74 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 Gene3D G3DSA:3.40.50.720 11 255 1.2E-76 T 31-10-2018 BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 255 5.8E-63 T 31-10-2018 BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.7E-38 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_24090 24ed40925ddcf949321d37b6be606dad 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.1E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_07650 706cfc0f0a60519b38940b29d8c9c958 109 SUPERFAMILY SSF52091 1 97 7.06E-15 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_07650 706cfc0f0a60519b38940b29d8c9c958 109 Pfam PF13466 STAS domain 14 92 1.5E-15 T 31-10-2018 IPR002645 STAS domain BRM88_07650 706cfc0f0a60519b38940b29d8c9c958 109 Gene3D G3DSA:3.30.750.24 10 104 4.1E-14 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_11430 ddba0328da1277447d31e87715757797 812 Pfam PF10070 Uncharacterized protein conserved in bacteria (DUF2309) 22 773 1.7E-247 T 31-10-2018 IPR018752 Uncharacterised protein family UPF0753 BRM88_11430 ddba0328da1277447d31e87715757797 812 Hamap MF_01871 UPF0753 protein . 16 788 22.004 T 31-10-2018 IPR018752 Uncharacterised protein family UPF0753 BRM88_23625 57835b8b34dc1f914409aad105cf1bda 226 Gene3D G3DSA:1.10.357.10 62 220 4.0E-26 T 31-10-2018 BRM88_23625 57835b8b34dc1f914409aad105cf1bda 226 Gene3D G3DSA:1.10.10.60 11 61 1.3E-14 T 31-10-2018 BRM88_23625 57835b8b34dc1f914409aad105cf1bda 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 71 4.3E-8 T 31-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BRM88_23625 57835b8b34dc1f914409aad105cf1bda 226 SUPERFAMILY SSF46689 20 79 1.8E-10 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_03875 221b68951c20ffc12aa28938f57f2adc 296 SUPERFAMILY SSF103088 215 280 2.49E-6 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 SUPERFAMILY SSF47226 108 218 1.7E-9 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 Gene3D G3DSA:1.20.120.160 143 240 1.9E-12 T 31-10-2018 IPR036641 HPT domain superfamily GO:0000160 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 Gene3D G3DSA:3.40.50.2300 4 131 1.4E-21 T 31-10-2018 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 Pfam PF01627 Hpt domain 165 220 6.3E-5 T 31-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 Pfam PF00072 Response regulator receiver domain 14 123 1.6E-13 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 SMART SM00448 11 122 2.3E-11 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_09690 05c7a7a62feb9476f09102d3d9e1bcbc 240 SUPERFAMILY SSF52172 10 130 1.28E-24 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_11505 98aa6f4a41106d967859abf5a8075480 170 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 18 115 8.3E-26 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BRM88_11505 98aa6f4a41106d967859abf5a8075480 170 Gene3D G3DSA:3.40.140.10 11 167 2.8E-54 T 31-10-2018 BRM88_11505 98aa6f4a41106d967859abf5a8075480 170 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 67 104 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BRM88_11505 98aa6f4a41106d967859abf5a8075480 170 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 20 163 46.161 T 31-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 BRM88_11505 98aa6f4a41106d967859abf5a8075480 170 SUPERFAMILY SSF53927 14 163 2.06E-53 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 Pfam PF02119 Flagellar P-ring protein 28 371 1.8E-135 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 Hamap MF_00416 Flagellar P-ring protein [flgI]. 8 372 37.919 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 28 43 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 63 78 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 43 58 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 111 128 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 195 213 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 89 108 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 169 187 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 259 271 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_13565 ad1f1b63b4f7228a868ad8a60d15db0f 372 PRINTS PR01010 Flagellar P-ring protein signature 128 146 6.6E-78 T 31-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BRM88_00055 27fd7119edb98e1c03cca56e63835065 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 135 4.0E-25 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BRM88_00055 27fd7119edb98e1c03cca56e63835065 140 Gene3D G3DSA:3.30.420.270 63 132 4.4E-9 T 31-10-2018 BRM88_19570 a26b4e02e43c4ee1b13a5c903bad396b 548 SUPERFAMILY SSF48452 338 427 7.6E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19570 a26b4e02e43c4ee1b13a5c903bad396b 548 Gene3D G3DSA:3.30.2010.10 65 144 1.3E-6 T 31-10-2018 BRM88_19570 a26b4e02e43c4ee1b13a5c903bad396b 548 Gene3D G3DSA:1.25.40.10 365 447 2.3E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_19570 a26b4e02e43c4ee1b13a5c903bad396b 548 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 1 538 37.724 T 31-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 BRM88_19570 a26b4e02e43c4ee1b13a5c903bad396b 548 Pfam PF01435 Peptidase family M48 66 260 1.7E-38 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BRM88_22200 4b617efe0e88bec0eea2144de307df89 238 SUPERFAMILY SSF56784 13 218 5.19E-21 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_22200 4b617efe0e88bec0eea2144de307df89 238 Pfam PF12710 haloacid dehalogenase-like hydrolase 15 197 1.2E-25 T 31-10-2018 BRM88_22200 4b617efe0e88bec0eea2144de307df89 238 Gene3D G3DSA:1.20.1440.100 26 103 3.2E-25 T 31-10-2018 BRM88_22200 4b617efe0e88bec0eea2144de307df89 238 Gene3D G3DSA:3.40.50.1000 15 211 3.2E-25 T 31-10-2018 IPR023214 HAD superfamily BRM88_16230 1d393e58e20b5dd5d01366fa4bd7388c 215 PIRSF PIRSF029287 1 205 3.5E-31 T 31-10-2018 IPR017748 T6S-associated protein TagF BRM88_16230 1d393e58e20b5dd5d01366fa4bd7388c 215 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 9 125 4.2E-29 T 31-10-2018 IPR017748 T6S-associated protein TagF BRM88_16230 1d393e58e20b5dd5d01366fa4bd7388c 215 Gene3D G3DSA:3.40.1730.10 6 206 1.2E-35 T 31-10-2018 IPR038225 T6S-associated protein TagF superfamily BRM88_16230 1d393e58e20b5dd5d01366fa4bd7388c 215 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 9 143 3.5E-40 T 31-10-2018 IPR017748 T6S-associated protein TagF BRM88_06700 3ac633f0d30c86be0f09e16dff5a5a95 110 Gene3D G3DSA:1.10.150.280 15 91 8.3E-19 T 31-10-2018 BRM88_06700 3ac633f0d30c86be0f09e16dff5a5a95 110 Pfam PF12836 Helix-hairpin-helix motif 26 86 1.0E-21 T 31-10-2018 BRM88_06700 3ac633f0d30c86be0f09e16dff5a5a95 110 SUPERFAMILY SSF47781 25 91 2.78E-25 T 31-10-2018 IPR010994 RuvA domain 2-like BRM88_06700 3ac633f0d30c86be0f09e16dff5a5a95 110 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 26 86 2.7E-22 T 31-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BRM88_04390 0e0ed649639bc8b6550ca1d84970447f 288 TIGRFAM TIGR01595 cas_CT1132: CRISPR-associated protein, CT1132 family 4 275 2.5E-84 T 31-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C BRM88_04390 0e0ed649639bc8b6550ca1d84970447f 288 TIGRFAM TIGR02589 cas_Csd2: CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG 7 287 7.2E-122 T 31-10-2018 IPR013418 CRISPR-associated protein Csd2 BRM88_04390 0e0ed649639bc8b6550ca1d84970447f 288 Pfam PF05107 CRISPR-associated protein Cas7 6 275 2.8E-111 T 31-10-2018 IPR006482 CRISPR-associated protein Cas7, subtype I-B/I-C BRM88_01380 87c5e1815cfe716bb7e1cf08e38f443c 129 SUPERFAMILY SSF54427 29 128 3.68E-28 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_01380 87c5e1815cfe716bb7e1cf08e38f443c 129 Pfam PF02810 SEC-C motif 7 24 3.4E-5 T 31-10-2018 IPR004027 SEC-C motif BRM88_01380 87c5e1815cfe716bb7e1cf08e38f443c 129 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 6 129 29.088 T 31-10-2018 IPR023006 Uncharacterised protein family UPF0225 BRM88_01380 87c5e1815cfe716bb7e1cf08e38f443c 129 Gene3D G3DSA:3.10.450.50 9 129 2.1E-33 T 31-10-2018 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 PRINTS PR01270 Histone deacetylase superfamily signature 151 166 9.6E-16 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 PRINTS PR01270 Histone deacetylase superfamily signature 117 140 9.6E-16 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 PRINTS PR01270 Histone deacetylase superfamily signature 231 241 9.6E-16 T 31-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 Pfam PF00850 Histone deacetylase domain 18 301 1.1E-75 T 31-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 Gene3D G3DSA:3.40.800.20 1 302 5.0E-106 T 31-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BRM88_19980 f1368acdebcd4c0a413707a2f0fe381d 302 SUPERFAMILY SSF52768 1 301 4.08E-96 T 31-10-2018 IPR023696 Ureohydrolase domain superfamily BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 SUPERFAMILY SSF63380 8 100 8.6E-25 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 SUPERFAMILY SSF52343 104 257 9.17E-40 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 Gene3D G3DSA:2.40.30.10 1 97 9.5E-30 T 31-10-2018 BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 Gene3D G3DSA:3.40.50.80 101 255 1.7E-41 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 Pfam PF00175 Oxidoreductase NAD-binding domain 113 229 2.7E-7 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BRM88_12375 6a4c98de1fad44923ffeab71ea592ae2 259 Pfam PF00970 Oxidoreductase FAD-binding domain 19 98 1.7E-6 T 31-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BRM88_14500 6dc1527821685aaef22c79dc5e772eb6 92 SUPERFAMILY SSF47598 3 44 4.08E-13 T 31-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BRM88_14500 6dc1527821685aaef22c79dc5e772eb6 92 Gene3D G3DSA:1.10.1220.10 10 51 6.1E-9 T 31-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BRM88_14500 6dc1527821685aaef22c79dc5e772eb6 92 Pfam PF01402 Ribbon-helix-helix protein, copG family 5 42 2.5E-11 T 31-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 BRM88_07225 896be60d858251f80a2263324c7938cd 198 Gene3D G3DSA:3.15.10.40 27 189 3.9E-6 T 31-10-2018 BRM88_07225 896be60d858251f80a2263324c7938cd 198 Pfam PF07273 Protein of unknown function (DUF1439) 38 159 1.0E-8 T 31-10-2018 IPR010835 Protein of unknown function DUF1439 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 PRINTS PR00113 Alkaline phosphatase signature 173 193 2.6E-41 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 PRINTS PR00113 Alkaline phosphatase signature 324 353 2.6E-41 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 PRINTS PR00113 Alkaline phosphatase signature 71 91 2.6E-41 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 PRINTS PR00113 Alkaline phosphatase signature 127 142 2.6E-41 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 PRINTS PR00113 Alkaline phosphatase signature 236 246 2.6E-41 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 SMART SM00098 72 538 2.1E-146 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 Pfam PF00245 Alkaline phosphatase 71 533 7.8E-122 T 31-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 SUPERFAMILY SSF53649 65 534 2.04E-138 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BRM88_17595 5bfc743789bd451bf1b49fb9bbdbacd4 568 Gene3D G3DSA:3.40.720.10 44 549 1.4E-166 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BRM88_20790 0b9243c347f62ec8b3f9a32ee828f8e3 88 Pfam PF01527 Transposase 2 71 6.6E-16 T 31-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BRM88_20790 0b9243c347f62ec8b3f9a32ee828f8e3 88 SUPERFAMILY SSF46689 1 73 8.24E-13 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_23820 03f687f63e22dc860d47085835b48625 210 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 95 105 - T 31-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 62 198 7.6E-43 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 187 198 - T 31-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 SUPERFAMILY SSF49329 53 198 1.96E-41 T 31-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 Gene3D G3DSA:2.60.40.200 52 204 3.1E-46 T 31-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 173 199 5.8E-7 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 95 117 5.8E-7 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23820 03f687f63e22dc860d47085835b48625 210 PRINTS PR00068 Cu-Zn-superoxide dismutase family signature 132 141 5.8E-7 T 31-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BRM88_23885 5a1fd294c6cca6081c78092aefe490d4 329 PIRSF PIRSF005211 1 329 4.4E-71 T 31-10-2018 IPR012020 AB hydrolase 4 family BRM88_23885 5a1fd294c6cca6081c78092aefe490d4 329 SUPERFAMILY SSF53474 41 321 1.77E-35 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23885 5a1fd294c6cca6081c78092aefe490d4 329 Pfam PF12697 Alpha/beta hydrolase family 72 317 1.2E-11 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 Gene3D G3DSA:3.40.570.10 31 247 5.4E-48 T 31-10-2018 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 SMART SM00477 50 239 8.2E-25 T 31-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 SUPERFAMILY SSF54060 26 247 4.36E-56 T 31-10-2018 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 Pfam PF01223 DNA/RNA non-specific endonuclease 45 233 3.8E-43 T 31-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 SMART SM00892 49 239 7.7E-33 T 31-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 BRM88_01965 937290095017e35bd04dcd47fcbb5294 250 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 111 119 - T 31-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 55.078 T 31-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 Gene3D G3DSA:3.90.110.10 157 328 3.4E-59 T 31-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 320 8.8E-30 T 31-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 154 5.2E-36 T 31-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 SUPERFAMILY SSF51735 3 157 8.77E-45 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 PIRSF PIRSF000102 1 326 9.4E-63 T 31-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 3 321 7.1E-141 T 31-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 Gene3D G3DSA:3.40.50.720 1 156 1.6E-58 T 31-10-2018 BRM88_04905 7ad0d73c29c4db2d6b6156233fbf6a04 328 SUPERFAMILY SSF56327 159 327 4.01E-57 T 31-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 Gene3D G3DSA:3.30.930.10 7 331 5.4E-118 T 31-10-2018 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 9.1E-23 T 31-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 SUPERFAMILY SSF46589 12 99 1.62E-20 T 31-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 Pfam PF01409 tRNA synthetases class II core domain (F) 92 330 2.5E-104 T 31-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 330 48.519 T 31-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 BRM88_17025 1f859a3333b2687a2ac4c62faa320f08 331 SUPERFAMILY SSF55681 92 330 2.84E-78 T 31-10-2018 BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 Gene3D G3DSA:3.40.30.10 2 200 2.1E-69 T 31-10-2018 BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 Pfam PF00043 Glutathione S-transferase, C-terminal domain 125 190 5.1E-10 T 31-10-2018 IPR004046 Glutathione S-transferase, C-terminal BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 SUPERFAMILY SSF47616 79 202 7.52E-23 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 70 3.6E-9 T 31-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 SUPERFAMILY SSF52833 1 78 4.12E-16 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_04900 8de7905fa4e1b2860e7ade2ee7a07ce3 204 Gene3D G3DSA:1.20.1050.10 79 191 2.1E-69 T 31-10-2018 BRM88_24330 e98c974fd431ed0f12e12e6f4f540557 439 Pfam PF13546 DDE superfamily endonuclease 19 291 5.2E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_24330 e98c974fd431ed0f12e12e6f4f540557 439 SUPERFAMILY SSF53098 21 403 9.86E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_10650 a0d248cfd1b3e3db36877723c6ef1fb4 499 Pfam PF08007 Cupin superfamily protein 25 337 3.6E-100 T 31-10-2018 IPR003347 JmjC domain BRM88_10650 a0d248cfd1b3e3db36877723c6ef1fb4 499 Gene3D G3DSA:1.10.10.2510 231 401 7.2E-36 T 31-10-2018 BRM88_10650 a0d248cfd1b3e3db36877723c6ef1fb4 499 SMART SM00558 112 241 8.8E-5 T 31-10-2018 IPR003347 JmjC domain BRM88_10650 a0d248cfd1b3e3db36877723c6ef1fb4 499 SUPERFAMILY SSF51197 22 314 8.79E-66 T 31-10-2018 BRM88_10650 a0d248cfd1b3e3db36877723c6ef1fb4 499 Gene3D G3DSA:2.60.120.650 12 230 2.4E-80 T 31-10-2018 BRM88_24180 13c8d01e8fcd3800bfad12092a5ce50e 145 SUPERFAMILY SSF51316 19 139 5.13E-31 T 31-10-2018 IPR011057 Mss4-like superfamily BRM88_24180 13c8d01e8fcd3800bfad12092a5ce50e 145 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 46 126 7.5E-9 T 31-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 BRM88_24180 13c8d01e8fcd3800bfad12092a5ce50e 145 Gene3D G3DSA:2.170.150.70 23 140 1.9E-35 T 31-10-2018 BRM88_15850 d56026909d898ca69508812436fe160e 208 Gene3D G3DSA:1.20.58.220 14 208 2.3E-31 T 31-10-2018 IPR038078 PhoU-like domain superfamily BRM88_15850 d56026909d898ca69508812436fe160e 208 Pfam PF01865 Protein of unknown function DUF47 60 203 6.9E-6 T 31-10-2018 IPR018445 Putative phosphate transport regulator BRM88_20915 8971919eecbfd5235f41dad26a3483ab 425 Gene3D G3DSA:1.20.1250.20 8 226 2.9E-45 T 31-10-2018 BRM88_20915 8971919eecbfd5235f41dad26a3483ab 425 Gene3D G3DSA:1.20.1250.20 232 418 1.8E-41 T 31-10-2018 BRM88_20915 8971919eecbfd5235f41dad26a3483ab 425 Pfam PF07690 Major Facilitator Superfamily 18 376 1.3E-13 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_20915 8971919eecbfd5235f41dad26a3483ab 425 SUPERFAMILY SSF103473 11 414 9.81E-31 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_20915 8971919eecbfd5235f41dad26a3483ab 425 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 93 411 1.7E-127 T 31-10-2018 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0015757|GO:0016021|GO:1904659 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 87 25.188 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 SUPERFAMILY SSF54570 3 82 6.15E-34 T 31-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 Pfam PF00203 Ribosomal protein S19 3 81 8.6E-36 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 PRINTS PR00975 Ribosomal protein S19 family signature 51 63 1.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 PRINTS PR00975 Ribosomal protein S19 family signature 63 78 1.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 PRINTS PR00975 Ribosomal protein S19 family signature 31 50 1.2E-22 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 Gene3D G3DSA:3.30.860.10 1 89 3.0E-39 T 31-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 PIRSF PIRSF002144 1 89 3.7E-32 T 31-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 ProSitePatterns PS00323 Ribosomal protein S19 signature. 51 75 - T 31-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19095 1c9a27fcc6d9c51cbfdde03e6ed17e70 89 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 88 1.6E-42 T 31-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 BRM88_13915 d05d9c8d3dfe31226386d5f9567d78a5 130 SUPERFAMILY SSF46626 30 130 3.35E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_13915 d05d9c8d3dfe31226386d5f9567d78a5 130 Gene3D G3DSA:1.10.760.10 49 130 9.7E-20 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_13915 d05d9c8d3dfe31226386d5f9567d78a5 130 Pfam PF00034 Cytochrome c 58 130 1.5E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 87 106 1.4E-25 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 28 49 1.4E-25 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 211 230 1.4E-25 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 189 211 1.4E-25 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 13 264 1.9E-81 T 31-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 BRM88_00450 3f4aafeadb7d39b0dcaddd458cb9121f 276 Pfam PF01311 Bacterial export proteins, family 1 20 252 1.3E-48 T 31-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BRM88_06610 c86f50044938cd847d56c952a6f9dab2 75 PIRSF PIRSF003113 1 75 1.9E-22 T 31-10-2018 IPR002634 BolA protein BRM88_06610 c86f50044938cd847d56c952a6f9dab2 75 Pfam PF01722 BolA-like protein 21 74 6.6E-19 T 31-10-2018 IPR002634 BolA protein BRM88_06610 c86f50044938cd847d56c952a6f9dab2 75 Gene3D G3DSA:3.30.300.90 1 75 8.3E-33 T 31-10-2018 BRM88_06610 c86f50044938cd847d56c952a6f9dab2 75 SUPERFAMILY SSF82657 3 74 5.62E-24 T 31-10-2018 IPR036065 BolA-like superfamily BRM88_14180 f0610c70a3c004c49284f46deb5b7358 439 Pfam PF13546 DDE superfamily endonuclease 19 291 1.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_14180 f0610c70a3c004c49284f46deb5b7358 439 SUPERFAMILY SSF53098 8 403 4.7E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 Hamap MF_01396 ATP synthase subunit c [atpH]. 17 82 13.72 T 31-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 27 84 7.0E-23 T 31-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 Pfam PF00137 ATP synthase subunit C 18 80 3.8E-8 T 31-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 ProSitePatterns PS00605 ATP synthase c subunit signature. 47 68 - T 31-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 Gene3D G3DSA:1.20.20.10 9 85 9.4E-25 T 31-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BRM88_03635 9739708c5e21460f817c9602482e5fc2 100 SUPERFAMILY SSF81333 12 86 3.27E-17 T 31-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 233 257 5.9E-40 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 134 153 5.9E-40 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 385 411 5.9E-40 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 5.9E-40 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 7 494 2.1E-195 T 31-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17225 bb302448c23025d9beace3e8d81492a8 500 Pfam PF00361 Proton-conducting membrane transporter 128 428 4.9E-78 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_07850 5ea7a51ba1340ad66f25ca022e926775 263 Pfam PF05433 Glycine zipper 2TM domain 103 143 1.4E-9 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 2 265 19.852 T 31-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 145 262 6.8E-40 T 31-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 Gene3D G3DSA:1.25.40.10 145 272 3.6E-35 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 Pfam PF13525 Outer membrane lipoprotein 144 266 2.2E-13 T 31-10-2018 IPR039565 Outer membrane lipoprotein BamD-like BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 SUPERFAMILY SSF48452 144 259 3.13E-14 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_08635 30a6168fc3a5330c866258d2419445cc 272 Pfam PF16331 TolA binding protein trimerisation 26 99 1.2E-18 T 31-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 SUPERFAMILY SSF117143 79 368 1.44E-75 T 31-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 31-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 Pfam PF00460 Flagella basal body rod protein 3 33 1.1E-8 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 Pfam PF07559 Flagellar basal body protein FlaE 177 288 2.5E-22 T 31-10-2018 IPR011491 Flagellar hook protein FlgE BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 389 1.0E-107 T 31-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 Gene3D G3DSA:2.60.98.20 151 289 5.6E-32 T 31-10-2018 IPR037058 Flagellar hook protein FlgE superfamily BRM88_13540 c137bafc60f96d17e0163a770ca6f237 407 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 328 406 2.8E-19 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BRM88_08555 8446eb29b1511646244e2eac1716bbe2 97 Pfam PF09723 Zinc ribbon domain 1 41 3.8E-15 T 31-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain BRM88_08555 8446eb29b1511646244e2eac1716bbe2 97 SMART SM00834 1 42 7.9E-17 T 31-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain BRM88_08555 8446eb29b1511646244e2eac1716bbe2 97 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 3.0E-21 T 31-10-2018 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain BRM88_18815 a972efdb43ff4a97059550b9a55e04c6 265 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 140 263 5.0E-36 T 31-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BRM88_18815 a972efdb43ff4a97059550b9a55e04c6 265 Gene3D G3DSA:3.30.1380.10 108 265 6.8E-33 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_18815 a972efdb43ff4a97059550b9a55e04c6 265 SUPERFAMILY SSF55166 137 262 3.53E-24 T 31-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BRM88_13385 dbd9d0df0fa3e082dadfc4a8d3e7f676 108 Pfam PF02641 Uncharacterized ACR, COG1993 5 84 8.3E-14 T 31-10-2018 IPR003793 Domain of unknown function DUF190 BRM88_13385 dbd9d0df0fa3e082dadfc4a8d3e7f676 108 Gene3D G3DSA:3.30.70.120 1 95 3.0E-16 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BRM88_13385 dbd9d0df0fa3e082dadfc4a8d3e7f676 108 SUPERFAMILY SSF54913 1 100 1.03E-26 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 Pfam PF00327 Ribosomal protein L30p/L7e 10 59 1.5E-12 T 31-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 SUPERFAMILY SSF55129 7 63 7.06E-17 T 31-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 Gene3D G3DSA:3.30.1390.20 5 63 2.0E-19 T 31-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 9 63 5.2E-19 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 6 63 18.681 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_19025 0dacc20df937a2d529e099010a9daee5 63 PIRSF PIRSF002211 1 63 7.4E-24 T 31-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_20045 58b46da5e6ad5bd621277cbe1c39416a 296 Pfam PF04536 TPM domain 36 158 1.3E-35 T 31-10-2018 IPR007621 TPM domain BRM88_20045 58b46da5e6ad5bd621277cbe1c39416a 296 Gene3D G3DSA:3.10.310.50 25 166 9.0E-45 T 31-10-2018 BRM88_19530 1863e694df0765a4f5248d874a82b57d 216 SUPERFAMILY SSF55068 10 211 3.79E-74 T 31-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BRM88_19530 1863e694df0765a4f5248d874a82b57d 216 Gene3D G3DSA:3.30.1060.10 6 216 1.1E-84 T 31-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BRM88_19530 1863e694df0765a4f5248d874a82b57d 216 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 47 201 7.1E-60 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BRM88_19530 1863e694df0765a4f5248d874a82b57d 216 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 45 207 36.286 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BRM88_19530 1863e694df0765a4f5248d874a82b57d 216 Pfam PF01625 Peptide methionine sulfoxide reductase 48 201 1.2E-61 T 31-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BRM88_00120 17059794fb743b1f8c97c342a71f19d3 188 Pfam PF04191 Phospholipid methyltransferase 73 170 4.0E-20 T 31-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 BRM88_00120 17059794fb743b1f8c97c342a71f19d3 188 Gene3D G3DSA:1.20.120.1630 5 187 2.4E-36 T 31-10-2018 BRM88_20685 8945bddb7381e6e9637e321ead6caa7a 535 SUPERFAMILY SSF55931 4 82 3.92E-13 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_20685 8945bddb7381e6e9637e321ead6caa7a 535 Pfam PF13546 DDE superfamily endonuclease 114 387 5.4E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_20685 8945bddb7381e6e9637e321ead6caa7a 535 SUPERFAMILY SSF53098 114 499 8.34E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_20685 8945bddb7381e6e9637e321ead6caa7a 535 Gene3D G3DSA:3.30.590.20 1 80 2.0E-26 T 31-10-2018 BRM88_20685 8945bddb7381e6e9637e321ead6caa7a 535 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 2 86 3.6E-20 T 31-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BRM88_02650 0c79ef009b7aa3161d10d6e37304a3bf 426 PIRSF PIRSF029171 1 426 2.3E-107 T 31-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 BRM88_02650 0c79ef009b7aa3161d10d6e37304a3bf 426 Gene3D G3DSA:3.40.50.1820 344 426 1.1E-22 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02650 0c79ef009b7aa3161d10d6e37304a3bf 426 Gene3D G3DSA:3.40.50.1820 30 255 1.7E-65 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02650 0c79ef009b7aa3161d10d6e37304a3bf 426 SUPERFAMILY SSF53474 130 387 9.38E-19 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02650 0c79ef009b7aa3161d10d6e37304a3bf 426 Pfam PF03583 Secretory lipase 135 213 1.0E-6 T 31-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 Pfam PF08443 RimK-like ATP-grasp domain 97 285 1.9E-57 T 31-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 Gene3D G3DSA:3.30.1490.20 115 180 5.5E-18 T 31-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 285 1.2E-76 T 31-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 Gene3D G3DSA:3.30.470.80 182 294 1.4E-40 T 31-10-2018 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 Gene3D G3DSA:3.40.50.20 1 114 9.9E-37 T 31-10-2018 BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 52.881 T 31-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK BRM88_06160 effa214f3daa9d5cd34957fdee45b03f 295 SUPERFAMILY SSF56059 98 288 2.47E-45 T 31-10-2018 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Pfam PF13361 UvrD-like helicase C-terminal domain 718 900 1.2E-14 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 SUPERFAMILY SSF52540 14 901 3.7E-93 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 6 1315 18.694 T 31-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Gene3D G3DSA:1.10.486.10 660 803 7.3E-105 T 31-10-2018 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Pfam PF13361 UvrD-like helicase C-terminal domain 628 693 2.0E-6 T 31-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1021 1205 3.1E-6 T 31-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Gene3D G3DSA:3.90.320.10 955 1262 8.9E-64 T 31-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Pfam PF00580 UvrD/REP helicase N-terminal domain 15 495 3.6E-49 T 31-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 11 1233 1.4E-209 T 31-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Gene3D G3DSA:3.40.50.300 267 500 1.0E-25 T 31-10-2018 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 SUPERFAMILY SSF52980 966 1234 2.36E-51 T 31-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BRM88_23775 20fbfd066a3f292f7ea95e686fae1504 1355 Gene3D G3DSA:3.40.50.300 508 909 7.3E-105 T 31-10-2018 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 SUPERFAMILY SSF50993 27 434 8.11E-59 T 31-10-2018 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 Gene3D G3DSA:2.130.10.120 78 430 3.5E-134 T 31-10-2018 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 555 575 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 609 624 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 628 650 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 470 488 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 521 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 525 544 8.2E-42 T 31-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 SUPERFAMILY SSF53474 440 695 8.11E-53 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 Pfam PF00326 Prolyl oligopeptidase family 494 695 3.5E-48 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 Gene3D G3DSA:3.40.50.1820 28 657 3.5E-134 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_21330 2e1effe957d1ba6128d9eb6c6bf374f3 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 25 420 4.9E-32 T 31-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BRM88_13670 e67987c274738738a42307aeb0a5115d 507 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 323 452 3.7E-16 T 31-10-2018 IPR006342 Methyltransferase FkbM BRM88_13670 e67987c274738738a42307aeb0a5115d 507 Gene3D G3DSA:3.40.50.150 304 495 1.9E-38 T 31-10-2018 BRM88_13670 e67987c274738738a42307aeb0a5115d 507 SUPERFAMILY SSF53335 153 494 2.16E-60 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_13670 e67987c274738738a42307aeb0a5115d 507 Pfam PF05050 Methyltransferase FkbM domain 345 455 4.0E-9 T 31-10-2018 IPR006342 Methyltransferase FkbM BRM88_13595 be0d13f5612eeb7a1276bfba09107b49 137 SUPERFAMILY SSF101116 11 127 1.09E-34 T 31-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 BRM88_13595 be0d13f5612eeb7a1276bfba09107b49 137 Pfam PF02561 Flagellar protein FliS 10 126 3.6E-35 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BRM88_13595 be0d13f5612eeb7a1276bfba09107b49 137 Gene3D G3DSA:1.20.120.340 3 131 1.6E-40 T 31-10-2018 BRM88_13595 be0d13f5612eeb7a1276bfba09107b49 137 PIRSF PIRSF039090 3 137 2.0E-47 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BRM88_13595 be0d13f5612eeb7a1276bfba09107b49 137 TIGRFAM TIGR00208 fliS: flagellar protein FliS 12 126 1.8E-26 T 31-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BRM88_00480 44a198f5e3b8d93b6ed810f74a4cf1b8 130 TIGRFAM TIGR02558 HrpB2: type III secretion protein HrpB2 11 130 2.9E-43 T 31-10-2018 IPR013391 Type III secretion protein HrpB2 BRM88_00480 44a198f5e3b8d93b6ed810f74a4cf1b8 130 Pfam PF09487 Bacterial type III secretion protein (HrpB2) 17 130 3.4E-38 T 31-10-2018 IPR013391 Type III secretion protein HrpB2 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 39 213 6.2E-65 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 SUPERFAMILY SSF55681 17 218 1.82E-70 T 31-10-2018 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 PIRSF PIRSF016262 16 230 2.5E-60 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 87 140 9.0E-25 T 31-10-2018 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 Hamap MF_00013 Octanoyltransferase [lipB]. 17 218 38.643 T 31-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 Gene3D G3DSA:3.30.930.10 13 216 1.7E-66 T 31-10-2018 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 83 98 - T 31-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BRM88_21085 59cdfb9c5f97a6f04994dab024bf0f57 232 Pfam PF03099 Biotin/lipoate A/B protein ligase family 73 171 8.1E-9 T 31-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BRM88_23765 d4c7635187b86a77d8bc191f7fb17168 93 SUPERFAMILY SSF143011 2 93 5.49E-17 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_23765 d4c7635187b86a77d8bc191f7fb17168 93 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 4 93 6.4E-22 T 31-10-2018 IPR007711 Toxin HigB-1 BRM88_23765 d4c7635187b86a77d8bc191f7fb17168 93 Gene3D G3DSA:3.30.2310.20 1 93 1.4E-26 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.6E-53 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 SUPERFAMILY SSF75217 1 153 1.47E-47 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 PIRSF PIRSF004505 1 155 2.0E-45 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 Gene3D G3DSA:3.40.1280.10 1 156 5.7E-49 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 Pfam PF02590 Predicted SPOUT methyltransferase 1 154 4.9E-48 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BRM88_17695 5c4a6b4c4dba19c20e7e21000285945f 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.789 T 31-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BRM88_13095 3aa10de96e09a200fa84d0f2caf34fb3 120 Gene3D G3DSA:1.10.150.130 15 102 1.5E-23 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_13095 3aa10de96e09a200fa84d0f2caf34fb3 120 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 18 97 5.4E-17 T 31-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BRM88_11210 4ea8b43dc1d975fe486769b166737477 156 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 140 31.364 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BRM88_11210 4ea8b43dc1d975fe486769b166737477 156 SUPERFAMILY SSF82093 30 136 6.93E-38 T 31-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 BRM88_11210 4ea8b43dc1d975fe486769b166737477 156 Pfam PF03100 CcmE 5 130 8.1E-43 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BRM88_11210 4ea8b43dc1d975fe486769b166737477 156 Gene3D G3DSA:2.40.50.140 30 136 1.1E-36 T 31-10-2018 BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 22 31 - T 31-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 20 234 2.8E-33 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 PIRSF PIRSF000709 14 209 7.6E-21 T 31-10-2018 BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 Gene3D G3DSA:3.40.50.1240 15 238 1.7E-43 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 SUPERFAMILY SSF53254 19 224 2.23E-42 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_18370 099e4e8cdffb4bf384a3d72065576280 259 SMART SM00855 19 193 5.0E-18 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_24230 a64f3cf8c9e6c013009f34b72102dec5 155 SUPERFAMILY SSF51556 7 149 2.72E-39 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_24230 a64f3cf8c9e6c013009f34b72102dec5 155 Pfam PF04909 Amidohydrolase 6 144 2.9E-25 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_24230 a64f3cf8c9e6c013009f34b72102dec5 155 Gene3D G3DSA:3.20.20.140 1 154 8.3E-41 T 31-10-2018 BRM88_08070 60c19f39fae1d26770634f276ec0818a 278 Pfam PF06629 MltA-interacting protein MipA 52 277 1.8E-26 T 31-10-2018 IPR010583 MltA-interacting MipA BRM88_11545 e8b9856d99742efa6e7c971f26b61d2a 198 Pfam PF01066 CDP-alcohol phosphatidyltransferase 7 77 4.0E-13 T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_11545 e8b9856d99742efa6e7c971f26b61d2a 198 Gene3D G3DSA:1.20.120.1760 8 169 7.6E-15 T 31-10-2018 BRM88_11545 e8b9856d99742efa6e7c971f26b61d2a 198 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 55 77 - T 31-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BRM88_15625 3d4756eed7896c6d3e682b4d05085913 99 Gene3D G3DSA:1.10.530.10 1 69 2.0E-20 T 31-10-2018 BRM88_15625 3d4756eed7896c6d3e682b4d05085913 99 SUPERFAMILY SSF53955 2 65 6.19E-17 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_12680 a766fe8b8215cf44703568cf70cf3979 269 SUPERFAMILY SSF49879 115 215 1.02E-17 T 31-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 BRM88_12680 a766fe8b8215cf44703568cf70cf3979 269 Pfam PF16697 Inner membrane component of T3SS, cytoplasmic domain 125 198 4.8E-16 T 31-10-2018 IPR032030 YscD, cytoplasmic domain BRM88_12680 a766fe8b8215cf44703568cf70cf3979 269 Gene3D G3DSA:2.60.200.20 95 217 2.5E-19 T 31-10-2018 BRM88_12680 a766fe8b8215cf44703568cf70cf3979 269 SMART SM00240 137 187 3.9E-6 T 31-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BRM88_14725 8e989a4f14ea99f77783fe4eae06d7b0 426 Pfam PF07690 Major Facilitator Superfamily 271 419 4.6E-9 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_14725 8e989a4f14ea99f77783fe4eae06d7b0 426 SUPERFAMILY SSF103473 8 424 4.45E-59 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_14725 8e989a4f14ea99f77783fe4eae06d7b0 426 Pfam PF00083 Sugar (and other) transporter 19 225 6.6E-20 T 31-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BRM88_14725 8e989a4f14ea99f77783fe4eae06d7b0 426 Gene3D G3DSA:1.20.1250.20 14 426 8.3E-56 T 31-10-2018 BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 9 455 1.2E-203 T 31-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 SMART SM01086 347 446 9.0E-25 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 58 107 1.6E-6 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 347 415 1.2E-6 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 SUPERFAMILY SSF52540 8 453 2.26E-89 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 SMART SM00382 54 344 3.5E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 Pfam PF07724 AAA domain (Cdc48 subfamily) 195 341 9.9E-41 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 6 455 43.843 T 31-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BRM88_21270 045d1fc196727d6fecbe3b82bd551971 455 Gene3D G3DSA:1.10.8.60 347 452 3.6E-39 T 31-10-2018 BRM88_16895 a3da8706a96d5a1d6bc74bdf1db2a1b1 343 Pfam PF13551 Winged helix-turn helix 18 77 9.2E-15 T 31-10-2018 BRM88_16895 a3da8706a96d5a1d6bc74bdf1db2a1b1 343 Pfam PF13592 Winged helix-turn helix 95 153 2.4E-17 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_16895 a3da8706a96d5a1d6bc74bdf1db2a1b1 343 Gene3D G3DSA:3.30.420.470 137 334 1.6E-5 T 31-10-2018 BRM88_16895 a3da8706a96d5a1d6bc74bdf1db2a1b1 343 SUPERFAMILY SSF46689 13 129 1.97E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_16895 a3da8706a96d5a1d6bc74bdf1db2a1b1 343 Pfam PF13358 DDE superfamily endonuclease 171 308 1.0E-28 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_17510 926cd341a3f583a6f7d99a452a0dc6bf 283 SUPERFAMILY SSF52540 24 269 1.49E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_17510 926cd341a3f583a6f7d99a452a0dc6bf 283 ProSitePatterns PS01215 Mrp family signature. 128 144 - T 31-10-2018 IPR000808 Mrp, conserved site GO:0005524 BRM88_17510 926cd341a3f583a6f7d99a452a0dc6bf 283 Hamap MF_02040 Iron-sulfur cluster carrier protein. 10 269 37.71 T 31-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein BRM88_17510 926cd341a3f583a6f7d99a452a0dc6bf 283 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 22 264 3.4E-101 T 31-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BRM88_17510 926cd341a3f583a6f7d99a452a0dc6bf 283 Gene3D G3DSA:3.40.50.300 16 278 1.5E-83 T 31-10-2018 BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 Gene3D G3DSA:1.25.40.20 13 180 2.1E-36 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 Pfam PF12796 Ankyrin repeats (3 copies) 48 137 1.4E-11 T 31-10-2018 IPR020683 Ankyrin repeat-containing domain BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 SMART SM00248 140 169 8.5 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 SMART SM00248 107 136 6.5 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 SMART SM00248 74 103 0.0059 T 31-10-2018 IPR002110 Ankyrin repeat GO:0005515 BRM88_02025 612ca8b9cd6a93d2d382a513567b5f62 191 SUPERFAMILY SSF48403 44 171 6.13E-32 T 31-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BRM88_16470 9f94cd06d69b76f0e536403498b8cf5b 143 SUPERFAMILY SSF54534 33 140 2.75E-38 T 31-10-2018 BRM88_16470 9f94cd06d69b76f0e536403498b8cf5b 143 Gene3D G3DSA:3.10.50.40 29 143 1.4E-42 T 31-10-2018 BRM88_16470 9f94cd06d69b76f0e536403498b8cf5b 143 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 42 138 2.8E-34 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 SMART SM00882 14 226 2.6E-94 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 Pfam PF01144 Coenzyme A transferase 16 225 1.2E-79 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 27 42 - T 31-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 SUPERFAMILY SSF100950 15 236 5.37E-87 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 12 225 1.5E-81 T 31-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 BRM88_04000 19aada4e9b588fc511eaf075d43138db 243 Gene3D G3DSA:3.40.1080.10 8 236 9.6E-96 T 31-10-2018 BRM88_00210 3c625918fa29e4afbaca7c584096a1f1 326 Pfam PF01609 Transposase DDE domain 135 307 1.2E-26 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_00210 3c625918fa29e4afbaca7c584096a1f1 326 Pfam PF05598 Transposase domain (DUF772) 50 122 1.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Pfam PF16990 Carbohydrate binding module (family 35) 611 710 6.4E-7 T 31-10-2018 IPR005084 Carbohydrate binding module family 6 GO:0030246 BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Gene3D G3DSA:2.60.120.260 589 727 1.3E-22 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Pfam PF08306 Glycosyl hydrolase family 98 19 335 1.9E-116 T 31-10-2018 IPR013191 Glycosyl hydrolase family 98, central domain BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Gene3D G3DSA:2.60.220.10 443 582 2.9E-30 T 31-10-2018 IPR011071 Polysaccharide lyase family 8-like, C-terminal GO:0005975 BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Gene3D G3DSA:3.20.20.80 20 306 7.5E-19 T 31-10-2018 BRM88_20185 1521581ea9576904ff0e99d61571d296 727 SUPERFAMILY SSF49785 597 722 2.34E-11 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_20185 1521581ea9576904ff0e99d61571d296 727 Pfam PF08307 Glycosyl hydrolase family 98 C-terminal domain 343 510 3.3E-8 T 31-10-2018 IPR013190 Glycosyl hydrolase family 98, C-terminal BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 Gene3D G3DSA:3.40.50.1000 6 211 2.5E-70 T 31-10-2018 IPR023214 HAD superfamily BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 117 197 1.2E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 3 230 39.7 T 31-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 6 228 3.4E-80 T 31-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 1.1E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 192 205 1.1E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 115 128 1.1E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 165 185 1.1E-6 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 Gene3D G3DSA:1.10.720.60 18 100 2.5E-70 T 31-10-2018 BRM88_11135 300ee005d70ef06d911f8578bb6e545b 232 SUPERFAMILY SSF56784 1 230 5.51E-58 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 SUPERFAMILY SSF53383 8 419 6.67E-75 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 Gene3D G3DSA:3.90.1150.10 10 414 2.8E-157 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 TIGRFAM TIGR01814 kynureninase: kynureninase 11 421 4.2E-152 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 Pfam PF00266 Aminotransferase class-V 80 354 2.0E-11 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 Hamap MF_01970 Kynureninase [kynU]. 1 421 45.455 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 PIRSF PIRSF038800 2 422 8.3E-155 T 31-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BRM88_12855 9a6ffee822be718866833f1a7a346e4f 423 Gene3D G3DSA:3.40.640.10 48 320 2.8E-157 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_23195 276a89f39053b0d6c2013824a87947ec 296 SUPERFAMILY SSF88713 5 295 1.97E-72 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BRM88_23195 276a89f39053b0d6c2013824a87947ec 296 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 4 296 6.3E-153 T 31-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 BRM88_23195 276a89f39053b0d6c2013824a87947ec 296 Gene3D G3DSA:3.20.20.370 1 296 2.4E-79 T 31-10-2018 BRM88_23195 276a89f39053b0d6c2013824a87947ec 296 Pfam PF01522 Polysaccharide deacetylase 74 160 4.1E-7 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BRM88_17140 e164e8214f5948c61caf368205d680d3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 1.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17140 e164e8214f5948c61caf368205d680d3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 186 1.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17140 e164e8214f5948c61caf368205d680d3 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.0E-10 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17140 e164e8214f5948c61caf368205d680d3 247 SUPERFAMILY SSF51735 12 243 1.31E-42 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_17140 e164e8214f5948c61caf368205d680d3 247 Pfam PF00106 short chain dehydrogenase 16 209 9.7E-35 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_17140 e164e8214f5948c61caf368205d680d3 247 Gene3D G3DSA:3.40.50.720 2 246 3.3E-47 T 31-10-2018 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 177 280 2.6E-34 T 31-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 Gene3D G3DSA:1.10.3730.10 179 285 4.1E-40 T 31-10-2018 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 236 259 - T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 SUPERFAMILY SSF48179 176 282 6.29E-34 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 19 281 1.9E-84 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 18 113 9.1E-18 T 31-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 SUPERFAMILY SSF51735 18 174 7.59E-34 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 17 281 26.144 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 PIRSF PIRSF000193 16 284 8.5E-70 T 31-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BRM88_07270 32b4894d94a08f713b264561a72b1e1a 286 Gene3D G3DSA:3.40.50.720 16 178 1.4E-46 T 31-10-2018 BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 Pfam PF13638 PIN domain 8 158 1.5E-39 T 31-10-2018 IPR002716 PIN domain BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 SUPERFAMILY SSF88723 7 157 6.28E-11 T 31-10-2018 IPR029060 PIN-like domain superfamily BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 Pfam PF02562 PhoH-like protein 253 455 1.8E-54 T 31-10-2018 IPR003714 PhoH-like protein GO:0005524 BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 Gene3D G3DSA:3.40.50.300 251 464 2.9E-66 T 31-10-2018 BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 SMART SM00670 6 145 1.4E-11 T 31-10-2018 IPR002716 PIN domain BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 Gene3D G3DSA:3.40.50.1010 2 161 3.9E-25 T 31-10-2018 BRM88_15570 e2263a1ae4768bc9c0a48d33de4d07dd 465 SUPERFAMILY SSF52540 134 444 3.97E-29 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 SUPERFAMILY SSF57716 16 51 9.27E-12 T 31-10-2018 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 9 417 53.344 T 31-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Gene3D G3DSA:3.40.50.300 59 317 1.8E-109 T 31-10-2018 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 SMART SM00994 15 54 3.7E-24 T 31-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 14 414 1.4E-205 T 31-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Pfam PF06689 ClpX C4-type zinc finger 16 53 2.2E-20 T 31-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 SMART SM01086 319 414 5.7E-33 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 397 1.5E-16 T 31-10-2018 IPR019489 Clp ATPase, C-terminal BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Gene3D G3DSA:1.10.8.60 318 426 1.8E-40 T 31-10-2018 BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 SUPERFAMILY SSF52540 64 407 2.1E-70 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 SMART SM00382 113 266 1.1E-10 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Gene3D G3DSA:3.30.50.30 5 55 2.5E-25 T 31-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily BRM88_05185 bdcd8fd9b6f1b038b5863df5985d2ea7 428 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 312 2.2E-50 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_10125 c019d9d56070b351175b68a497f3350e 458 Pfam PF01609 Transposase DDE domain 284 421 4.5E-10 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_10125 c019d9d56070b351175b68a497f3350e 458 Pfam PF05598 Transposase domain (DUF772) 59 132 5.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 Gene3D G3DSA:3.40.50.2300 5 130 9.9E-32 T 31-10-2018 BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 Gene3D G3DSA:1.10.3210.10 131 325 7.6E-64 T 31-10-2018 BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 Pfam PF13487 HD domain 202 264 4.6E-18 T 31-10-2018 BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 SUPERFAMILY SSF52172 3 132 2.42E-33 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 SMART SM00448 4 116 1.8E-32 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 SMART SM00471 146 283 2.1E-7 T 31-10-2018 IPR003607 HD/PDEase domain BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 Pfam PF00072 Response regulator receiver domain 7 116 6.4E-23 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_14790 82d10e5cdade0f0baf585b7a5a766651 328 SUPERFAMILY SSF109604 144 314 1.51E-35 T 31-10-2018 BRM88_17900 ca4f96aef69ddc8b2cd1c070127674e9 139 SUPERFAMILY SSF56349 2 129 3.24E-17 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_17900 ca4f96aef69ddc8b2cd1c070127674e9 139 Gene3D G3DSA:1.10.443.10 1 135 7.5E-16 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_17900 ca4f96aef69ddc8b2cd1c070127674e9 139 Pfam PF00589 Phage integrase family 2 130 1.8E-8 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BRM88_19930 8955fa46d7d3129fa75e427c41db0e2f 298 Gene3D G3DSA:3.40.830.10 3 293 1.9E-84 T 31-10-2018 BRM88_19930 8955fa46d7d3129fa75e427c41db0e2f 298 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 271 3.5E-79 T 31-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 BRM88_19930 8955fa46d7d3129fa75e427c41db0e2f 298 SUPERFAMILY SSF53213 2 287 7.59E-90 T 31-10-2018 BRM88_23535 e737940206f2fd1c6438591b06a96040 472 Pfam PF02614 Glucuronate isomerase 22 467 5.6E-69 T 31-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BRM88_23535 e737940206f2fd1c6438591b06a96040 472 Hamap MF_00675 Uronate isomerase [uxaC]. 5 472 39.547 T 31-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BRM88_23535 e737940206f2fd1c6438591b06a96040 472 SUPERFAMILY SSF51556 8 471 3.2E-155 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_23535 e737940206f2fd1c6438591b06a96040 472 Gene3D G3DSA:3.20.20.140 6 61 6.4E-16 T 31-10-2018 BRM88_23535 e737940206f2fd1c6438591b06a96040 472 Gene3D G3DSA:3.20.20.140 125 472 9.4E-114 T 31-10-2018 BRM88_18825 ae9e377fc16cde6d51eb2e8457754e9e 134 Pfam PF04241 Protein of unknown function (DUF423) 39 117 4.2E-8 T 31-10-2018 IPR006696 Protein of unknown function DUF423 BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 Gene3D G3DSA:1.10.579.10 338 458 2.1E-51 T 31-10-2018 BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 21 237 5.9E-69 T 31-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 Gene3D G3DSA:3.40.50.620 22 245 3.2E-111 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 Gene3D G3DSA:1.10.10.1710 459 525 5.3E-20 T 31-10-2018 BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 Gene3D G3DSA:1.25.40.80 147 334 3.2E-111 T 31-10-2018 BRM88_09725 e7add8841c1f5f8ebc4eb863012fa9b4 525 SUPERFAMILY SSF48173 244 501 5.76E-57 T 31-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 BRM88_02710 34f2eb42203ed2c3c245945ce2ba1dcd 397 PIRSF PIRSF029347 1 378 9.8E-38 T 31-10-2018 IPR014555 RecF-like BRM88_02710 34f2eb42203ed2c3c245945ce2ba1dcd 397 SUPERFAMILY SSF52540 1 363 2.0E-28 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02710 34f2eb42203ed2c3c245945ce2ba1dcd 397 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 25 344 1.9E-27 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_02710 34f2eb42203ed2c3c245945ce2ba1dcd 397 Gene3D G3DSA:3.40.50.300 1 365 8.0E-25 T 31-10-2018 BRM88_23805 4899e7456a1d7be13888e65e152559c6 178 Pfam PF07484 Phage Tail Collar Domain 7 61 1.9E-19 T 31-10-2018 IPR011083 Phage tail collar domain BRM88_23805 4899e7456a1d7be13888e65e152559c6 178 Gene3D G3DSA:3.90.1340.10 2 58 1.2E-11 T 31-10-2018 IPR037053 Phage tail collar domain superfamily BRM88_23805 4899e7456a1d7be13888e65e152559c6 178 SUPERFAMILY SSF88874 1 172 3.79E-45 T 31-10-2018 BRM88_09960 f31915cef0d6c56873b0b85a63e3a52e 202 PIRSF PIRSF035170 4 201 7.4E-70 T 31-10-2018 IPR009218 Predicted HD phosphohydrolase BRM88_09960 f31915cef0d6c56873b0b85a63e3a52e 202 Gene3D G3DSA:1.10.3210.10 11 155 8.1E-6 T 31-10-2018 BRM88_09960 f31915cef0d6c56873b0b85a63e3a52e 202 SUPERFAMILY SSF109604 19 195 7.85E-13 T 31-10-2018 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 5.3E-69 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 Pfam PF02542 YgbB family 5 158 6.2E-64 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 31-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 Gene3D G3DSA:3.30.1330.50 3 163 9.9E-67 T 31-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 35.71 T 31-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_15780 35f04f6d86287d5ab1d2b9c2f22577cf 163 SUPERFAMILY SSF69765 4 160 1.18E-64 T 31-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BRM88_02725 57653fc45d15e7eb65c5c1e4cc5483ee 411 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 35 343 1.8E-30 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_02725 57653fc45d15e7eb65c5c1e4cc5483ee 411 Gene3D G3DSA:3.40.50.300 10 173 2.3E-12 T 31-10-2018 BRM88_02725 57653fc45d15e7eb65c5c1e4cc5483ee 411 SUPERFAMILY SSF52540 12 354 1.74E-25 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_02725 57653fc45d15e7eb65c5c1e4cc5483ee 411 PIRSF PIRSF029347 11 377 4.1E-41 T 31-10-2018 IPR014555 RecF-like BRM88_02725 57653fc45d15e7eb65c5c1e4cc5483ee 411 Gene3D G3DSA:3.40.50.300 208 366 4.9E-8 T 31-10-2018 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 Gene3D G3DSA:3.90.79.10 10 155 1.2E-30 T 31-10-2018 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 PRINTS PR01402 Mutator MutX protein signature 105 125 2.9E-10 T 31-10-2018 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 PRINTS PR01402 Mutator MutX protein signature 27 42 2.9E-10 T 31-10-2018 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 PRINTS PR01402 Mutator MutX protein signature 125 142 2.9E-10 T 31-10-2018 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 PRINTS PR01402 Mutator MutX protein signature 9 27 2.9E-10 T 31-10-2018 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 PRINTS PR01402 Mutator MutX protein signature 74 100 2.9E-10 T 31-10-2018 IPR003562 Mutator MutX protein GO:0006281|GO:0008413 MetaCyc: PWY-6502 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 SUPERFAMILY SSF55811 2 138 1.33E-25 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_11535 0884a4c9eb9740432eb2840627c66168 162 Pfam PF00293 NUDIX domain 12 134 1.2E-16 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_14315 767b148e267f7882373f1e6c4438f5f5 518 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 29 484 1.0E-132 T 31-10-2018 IPR003846 Uncharacterised protein family UPF0061 BRM88_14315 767b148e267f7882373f1e6c4438f5f5 518 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 2 500 44.907 T 31-10-2018 IPR003846 Uncharacterised protein family UPF0061 BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 Gene3D G3DSA:1.10.101.10 50 118 3.9E-10 T 31-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 Gene3D G3DSA:2.40.440.10 138 330 2.0E-45 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 SUPERFAMILY SSF47090 57 108 5.81E-11 T 31-10-2018 IPR036365 PGBD-like superfamily BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 Pfam PF01471 Putative peptidoglycan binding domain 58 107 1.3E-9 T 31-10-2018 IPR002477 Peptidoglycan binding-like BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 Pfam PF03734 L,D-transpeptidase catalytic domain 198 326 1.2E-17 T 31-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BRM88_06005 c915347cbfa34388cd48e4f4b3b973bd 330 SUPERFAMILY SSF141523 195 327 4.32E-27 T 31-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BRM88_15580 26839a7182a2d6413c4bbab8ea77f291 274 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 14 259 1.8E-83 T 31-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_15580 26839a7182a2d6413c4bbab8ea77f291 274 Gene3D G3DSA:3.40.1190.20 2 270 1.4E-89 T 31-10-2018 IPR029056 Ribokinase-like BRM88_15580 26839a7182a2d6413c4bbab8ea77f291 274 SUPERFAMILY SSF53613 14 268 8.57E-72 T 31-10-2018 IPR029056 Ribokinase-like BRM88_15580 26839a7182a2d6413c4bbab8ea77f291 274 Pfam PF08543 Phosphomethylpyrimidine kinase 21 259 1.8E-82 T 31-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BRM88_14765 b2396052e778fe169f4989f640d57016 450 Gene3D G3DSA:3.90.1150.10 35 441 9.4E-148 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_14765 b2396052e778fe169f4989f640d57016 450 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 259 296 - T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_14765 b2396052e778fe169f4989f640d57016 450 Gene3D G3DSA:3.40.640.10 71 351 9.4E-148 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_14765 b2396052e778fe169f4989f640d57016 450 PIRSF PIRSF000521 28 155 8.1E-7 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_14765 b2396052e778fe169f4989f640d57016 450 PIRSF PIRSF000521 201 449 2.4E-16 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_14765 b2396052e778fe169f4989f640d57016 450 Pfam PF00202 Aminotransferase class-III 37 446 3.9E-91 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_14765 b2396052e778fe169f4989f640d57016 450 SUPERFAMILY SSF53383 22 447 7.32E-121 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_23035 6511eaf63f65b5576862a3865e4db10b 327 Pfam PF08908 Domain of unknown function (DUF1852) 1 323 1.2E-183 T 31-10-2018 IPR015004 Protein of unknown function DUF1852 BRM88_23035 6511eaf63f65b5576862a3865e4db10b 327 PIRSF PIRSF034367 1 327 1.4E-204 T 31-10-2018 IPR015004 Protein of unknown function DUF1852 BRM88_16520 b901196abf9ca85ee21b66ad138d402a 327 Pfam PF05598 Transposase domain (DUF772) 50 124 5.0E-20 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16520 b901196abf9ca85ee21b66ad138d402a 327 Pfam PF01609 Transposase DDE domain 136 311 2.4E-31 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_17805 8015c66d4a5f40ccd9e1c75d24690bc9 404 Pfam PF01609 Transposase DDE domain 89 329 1.8E-25 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_17805 8015c66d4a5f40ccd9e1c75d24690bc9 404 SUPERFAMILY SSF53098 15 367 2.81E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 SMART SM00304 347 400 1.4E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 465 652 5.3E-46 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 SUPERFAMILY SSF158472 347 398 5.89E-9 T 31-10-2018 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Pfam PF02743 Cache domain 55 309 2.2E-15 T 31-10-2018 IPR033479 Double Cache domain 1 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Gene3D G3DSA:1.20.1480.50 310 401 7.5E-14 T 31-10-2018 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Pfam PF00672 HAMP domain 347 397 3.5E-9 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 SMART SM00331 437 652 1.4E-44 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 SUPERFAMILY SSF103190 154 224 8.63E-5 T 31-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 SUPERFAMILY SSF81606 449 652 8.63E-8 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Gene3D G3DSA:3.60.40.10 403 653 7.0E-62 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_22675 8b80850b4867dc7fce71cac7b4a557cd 668 Gene3D G3DSA:3.30.450.20 48 223 2.0E-20 T 31-10-2018 BRM88_23895 d36dd8e78d8b659ba60529881cd266d9 142 Pfam PF03061 Thioesterase superfamily 50 127 4.4E-14 T 31-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BRM88_23895 d36dd8e78d8b659ba60529881cd266d9 142 Gene3D G3DSA:3.10.129.10 1 141 3.4E-53 T 31-10-2018 BRM88_23895 d36dd8e78d8b659ba60529881cd266d9 142 SUPERFAMILY SSF54637 13 139 1.28E-29 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_23895 d36dd8e78d8b659ba60529881cd266d9 142 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 135 1.6E-38 T 31-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 SUPERFAMILY SSF53671 2 335 9.22E-74 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 35 57 2.1E-10 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 147 164 2.1E-10 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00101 Aspartate carbamoyltransferase signature 315 329 2.1E-10 T 31-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 161 2.7E-36 T 31-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 Gene3D G3DSA:3.40.50.1370 168 331 7.6E-121 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 Gene3D G3DSA:3.40.50.1370 5 167 7.6E-121 T 31-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 170 332 1.7E-33 T 31-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 299 322 7.7E-13 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 287 296 7.7E-13 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_14095 e493399d6e1cc3f9117e1eda6faaa5b8 341 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 45 64 7.7E-13 T 31-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BRM88_14730 d51857e1c0abf1e93dc13b069f44e158 102 Gene3D G3DSA:1.10.10.10 3 94 5.7E-8 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_14730 d51857e1c0abf1e93dc13b069f44e158 102 SUPERFAMILY SSF46785 18 82 2.72E-8 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_11395 29969bcf56ad0bca899e19b9b462095f 297 Pfam PF00483 Nucleotidyl transferase 12 268 2.0E-31 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BRM88_11395 29969bcf56ad0bca899e19b9b462095f 297 SUPERFAMILY SSF53448 5 279 5.63E-63 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_11395 29969bcf56ad0bca899e19b9b462095f 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 267 4.2E-107 T 31-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BRM88_11395 29969bcf56ad0bca899e19b9b462095f 297 Gene3D G3DSA:3.90.550.10 1 293 1.3E-84 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 1.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 1.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 1.3E-5 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 Pfam PF03466 LysR substrate binding domain 104 309 1.5E-32 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 SUPERFAMILY SSF46785 10 124 4.0E-22 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 74 9.5E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 Gene3D G3DSA:1.10.10.10 13 101 2.4E-20 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 SUPERFAMILY SSF53850 107 314 1.71E-34 T 31-10-2018 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 Gene3D G3DSA:3.40.190.10 116 299 1.0E-44 T 31-10-2018 BRM88_15515 c67dbcd6a79db3041d5e5e1bc00bbe40 323 Gene3D G3DSA:3.40.190.10 178 281 1.0E-44 T 31-10-2018 BRM88_22660 d73f550086ede64f0571dc5d33c1abce 170 Pfam PF13276 HTH-like domain 48 103 3.9E-17 T 31-10-2018 IPR025948 HTH-like domain BRM88_15950 662a20810408aa0270aad19c26bd1b62 280 Gene3D G3DSA:3.40.50.150 37 280 3.7E-35 T 31-10-2018 BRM88_15950 662a20810408aa0270aad19c26bd1b62 280 SUPERFAMILY SSF53335 22 280 1.67E-35 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_15950 662a20810408aa0270aad19c26bd1b62 280 Pfam PF13649 Methyltransferase domain 65 159 2.4E-16 T 31-10-2018 BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 Gene3D G3DSA:3.20.20.120 116 353 5.8E-113 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 SMART SM00922 141 239 1.4E-24 T 31-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 SUPERFAMILY SSF54826 1 125 3.68E-31 T 31-10-2018 BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 SUPERFAMILY SSF51604 112 355 1.05E-67 T 31-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 11 124 3.8E-19 T 31-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 Gene3D G3DSA:3.30.390.10 1 355 5.8E-113 T 31-10-2018 IPR029017 Enolase-like, N-terminal BRM88_21880 db233edd81bf7433e460051ec2a65b95 365 Pfam PF13378 Enolase C-terminal domain-like 144 354 2.6E-52 T 31-10-2018 IPR029065 Enolase C-terminal domain-like BRM88_00060 89d83ae1f36898a70b78fb8a390f7f2c 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 135 4.0E-25 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BRM88_15195 940d4bb548992fc17aa645e43346cf4a 160 Gene3D G3DSA:2.30.30.40 16 140 8.5E-44 T 31-10-2018 BRM88_15195 940d4bb548992fc17aa645e43346cf4a 160 Pfam PF01584 CheW-like domain 13 149 1.1E-39 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15195 940d4bb548992fc17aa645e43346cf4a 160 Gene3D G3DSA:2.40.50.180 32 141 8.5E-44 T 31-10-2018 BRM88_15195 940d4bb548992fc17aa645e43346cf4a 160 SMART SM00260 9 146 4.2E-45 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15195 940d4bb548992fc17aa645e43346cf4a 160 SUPERFAMILY SSF50341 12 150 7.06E-42 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_12085 f0234bab1289e05a4ed6069141c076db 168 SUPERFAMILY SSF54593 14 164 7.47E-33 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_12085 f0234bab1289e05a4ed6069141c076db 168 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 16 118 4.9E-15 T 31-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BRM88_12085 f0234bab1289e05a4ed6069141c076db 168 Gene3D G3DSA:3.10.180.10 3 155 1.0E-29 T 31-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BRM88_22615 c18404df719cb5d967f8339642598b30 96 Gene3D G3DSA:2.20.130.30 26 96 1.3E-19 T 31-10-2018 BRM88_22615 c18404df719cb5d967f8339642598b30 96 Pfam PF11191 Protein of unknown function (DUF2782) 31 96 7.3E-16 T 31-10-2018 IPR021357 Protein of unknown function DUF2782 BRM88_13720 3840d703df3b420a529c2014c6d0bcd4 174 Pfam PF03748 Flagellar basal body-associated protein FliL 72 174 7.3E-24 T 31-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 BRM88_00915 5d638eb56ea1b8f076f1953a71f510e3 175 Gene3D G3DSA:2.60.120.200 15 147 2.5E-5 T 31-10-2018 BRM88_00915 5d638eb56ea1b8f076f1953a71f510e3 175 SUPERFAMILY SSF49899 17 125 7.52E-8 T 31-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 561 592 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1214 1238 0.056 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 527 558 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 663 694 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1179 1207 6.2E-10 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 459 490 1.9E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 391 422 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 839 870 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 323 354 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1009 1040 3.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 941 972 3.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 595 626 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 771 802 2.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 737 767 3.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 805 836 1.6E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1111 1142 4.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 357 388 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 425 456 4.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 975 1006 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1043 1074 6.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 873 904 5.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 289 320 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 907 938 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 629 660 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1145 1176 5.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 1077 1108 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 493 524 3.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 Pfam PF03377 TAL effector repeat 697 727 1.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16090 f3151ed7f3a86be9efec0d066eaa9736 1483 SUPERFAMILY SSF53901 785 889 2.99E-5 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 SMART SM00491 495 623 1.3E-36 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 SUPERFAMILY SSF52540 100 615 5.91E-5 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 Gene3D G3DSA:3.40.50.300 26 267 7.6E-42 T 31-10-2018 BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 Gene3D G3DSA:3.40.50.300 471 656 8.9E-35 T 31-10-2018 BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 SUPERFAMILY SSF52540 19 620 7.48E-23 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_09090 327d020de3ebc2fee992fedc9b76aca9 675 Pfam PF13307 Helicase C-terminal domain 480 636 1.3E-34 T 31-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BRM88_02475 e7ad2de5e391232e5b74a760ff38188d 293 Pfam PF05036 Sporulation related domain 217 291 9.5E-15 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_02475 e7ad2de5e391232e5b74a760ff38188d 293 Gene3D G3DSA:3.30.70.1070 212 293 9.2E-17 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_02475 e7ad2de5e391232e5b74a760ff38188d 293 SUPERFAMILY SSF110997 216 291 2.09E-15 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_19750 450560fb8eb676165aad76ca5e65256d 456 Gene3D G3DSA:1.20.1250.20 175 438 9.4E-6 T 31-10-2018 BRM88_19750 450560fb8eb676165aad76ca5e65256d 456 SUPERFAMILY SSF103473 174 434 1.03E-7 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_18415 a166e3772ca383b1905ebd395b13a9bc 248 Pfam PF14355 Abortive infection C-terminus 77 151 1.3E-14 T 31-10-2018 IPR026001 Abortive infection protein-like, C-terminal domain BRM88_17670 7f96a737062b05b7c169b8e300d0631d 244 Gene3D G3DSA:3.30.70.2970 51 158 6.5E-66 T 31-10-2018 BRM88_17670 7f96a737062b05b7c169b8e300d0631d 244 Pfam PF04402 Protein of unknown function (DUF541) 40 240 4.8E-52 T 31-10-2018 IPR007497 Protein of unknown function DUF541 BRM88_17670 7f96a737062b05b7c169b8e300d0631d 244 Gene3D G3DSA:3.30.110.170 41 241 6.5E-66 T 31-10-2018 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Pfam PF03929 PepSY-associated TM region 7 359 3.9E-60 T 31-10-2018 IPR005625 PepSY-associated TM protein BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 SUPERFAMILY SSF52343 707 844 1.44E-32 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Gene3D G3DSA:3.40.50.80 704 844 1.9E-34 T 31-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Pfam PF00258 Flavodoxin 387 510 2.5E-24 T 31-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Pfam PF00175 Oxidoreductase NAD-binding domain 713 817 4.3E-8 T 31-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 SUPERFAMILY SSF63380 536 704 2.72E-17 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Gene3D G3DSA:3.40.50.360 383 524 6.3E-37 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00369 Flavodoxin signature 434 445 3.4E-9 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00369 Flavodoxin signature 489 508 3.4E-9 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00369 Flavodoxin signature 386 399 3.4E-9 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00369 Flavodoxin signature 465 475 3.4E-9 T 31-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 SUPERFAMILY SSF52218 383 526 1.82E-38 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 Gene3D G3DSA:1.20.990.10 540 649 1.8E-5 T 31-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 803 811 2.1E-7 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 780 796 2.1E-7 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 749 760 2.1E-7 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 712 731 2.1E-7 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_01970 e78e9c52494e87342a0f48fc4a52eeab 844 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 649 656 2.1E-7 T 31-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BRM88_04710 0e0bc38b2c0d899321c331e216390ba7 459 Pfam PF02321 Outer membrane efflux protein 24 209 7.2E-25 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_04710 0e0bc38b2c0d899321c331e216390ba7 459 Pfam PF02321 Outer membrane efflux protein 234 430 2.4E-34 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_04710 0e0bc38b2c0d899321c331e216390ba7 459 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 445 4.3E-129 T 31-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 BRM88_04710 0e0bc38b2c0d899321c331e216390ba7 459 SUPERFAMILY SSF56954 23 445 1.44E-88 T 31-10-2018 BRM88_04710 0e0bc38b2c0d899321c331e216390ba7 459 Gene3D G3DSA:1.20.1600.10 22 452 3.7E-113 T 31-10-2018 BRM88_06095 6df7e14aaddda8c31ef439531a3fff79 257 Pfam PF02265 S1/P1 Nuclease 13 254 1.1E-65 T 31-10-2018 IPR003154 S1/P1 nuclease GO:0003676|GO:0004519|GO:0006308 BRM88_06095 6df7e14aaddda8c31ef439531a3fff79 257 Gene3D G3DSA:1.10.575.10 13 256 8.4E-71 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 BRM88_06095 6df7e14aaddda8c31ef439531a3fff79 257 SUPERFAMILY SSF48537 13 252 6.54E-63 T 31-10-2018 IPR008947 Phospholipase C/P1 nuclease domain superfamily GO:0016788 BRM88_02200 663445f529adf44149360dc588a31d11 177 SUPERFAMILY SSF81342 2 176 4.16E-35 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BRM88_02200 663445f529adf44149360dc588a31d11 177 Pfam PF01292 Prokaryotic cytochrome b561 7 173 2.2E-28 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 11 357 4.5E-108 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 Pfam PF00155 Aminotransferase class I and II 50 355 1.2E-51 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 Gene3D G3DSA:3.90.1150.10 9 351 1.2E-117 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 Gene3D G3DSA:3.40.640.10 53 262 1.2E-117 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 9 359 53.502 T 31-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BRM88_11745 1f59e3b715754dbad221e223353b47ae 363 SUPERFAMILY SSF53383 27 357 1.25E-72 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_21800 3edf878dc632e801a29f6102bb061261 267 Gene3D G3DSA:3.40.50.10090 23 248 9.6E-42 T 31-10-2018 BRM88_21800 3edf878dc632e801a29f6102bb061261 267 Pfam PF02602 Uroporphyrinogen-III synthase HemD 34 253 1.5E-22 T 31-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_21800 3edf878dc632e801a29f6102bb061261 267 Gene3D G3DSA:3.40.50.10090 51 178 9.6E-42 T 31-10-2018 BRM88_21800 3edf878dc632e801a29f6102bb061261 267 SUPERFAMILY SSF69618 20 258 1.7E-45 T 31-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BRM88_01050 65af87eb8a53ae71a7b158e6d0dfa2fc 458 Pfam PF01609 Transposase DDE domain 284 416 1.5E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_01050 65af87eb8a53ae71a7b158e6d0dfa2fc 458 Pfam PF05598 Transposase domain (DUF772) 59 132 5.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_22125 5779900f7176fa87d8682bb628c9d664 158 Pfam PF10003 Integral membrane protein (DUF2244) 18 150 4.2E-31 T 31-10-2018 IPR019253 Protein of unknown function DUF2244, transmembrane BRM88_17165 9c6e22c98d4224b8b72de27982ef618e 89 Pfam PF03966 Trm112p-like protein 2 68 4.1E-8 T 31-10-2018 IPR005651 Trm112-like BRM88_17165 9c6e22c98d4224b8b72de27982ef618e 89 SUPERFAMILY SSF158997 1 81 3.01E-7 T 31-10-2018 BRM88_17165 9c6e22c98d4224b8b72de27982ef618e 89 Gene3D G3DSA:2.20.25.10 8 89 7.6E-30 T 31-10-2018 BRM88_16225 cff84a7e136e33eb403aec794f91ccba 240 SMART SM00332 2 231 4.2E-15 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_16225 cff84a7e136e33eb403aec794f91ccba 240 Pfam PF13672 Protein phosphatase 2C 18 195 1.1E-13 T 31-10-2018 BRM88_16225 cff84a7e136e33eb403aec794f91ccba 240 SUPERFAMILY SSF81606 8 233 5.89E-47 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_16225 cff84a7e136e33eb403aec794f91ccba 240 SMART SM00331 11 233 3.4E-6 T 31-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_16225 cff84a7e136e33eb403aec794f91ccba 240 Gene3D G3DSA:3.60.40.10 1 234 2.1E-47 T 31-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BRM88_16500 b95573b6344fe116f332fa52219cd931 411 Pfam PF01610 Transposase 155 389 2.5E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_16500 b95573b6344fe116f332fa52219cd931 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 Gene3D G3DSA:3.40.50.720 59 123 1.6E-12 T 31-10-2018 BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 Gene3D G3DSA:3.40.50.720 127 332 1.2E-26 T 31-10-2018 BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 Gene3D G3DSA:3.30.9.10 222 401 1.2E-26 T 31-10-2018 BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 Pfam PF01266 FAD dependent oxidoreductase 126 402 8.0E-18 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 ProSitePatterns PS00677 D-amino acid oxidases signature. 91 109 - T 31-10-2018 IPR006181 D-amino acid oxidase, conserved site GO:0003884|GO:0055114 Reactome: R-HSA-389661|Reactome: R-HSA-9033241 BRM88_03260 85e02f4a36ffb2c3eb840ae527014641 404 SUPERFAMILY SSF51971 126 342 3.47E-19 T 31-10-2018 BRM88_24440 506c70f58adfc3518d2a17527380419c 398 SUPERFAMILY SSF52540 1 350 2.8E-25 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_24440 506c70f58adfc3518d2a17527380419c 398 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 27 343 6.0E-25 T 31-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BRM88_24440 506c70f58adfc3518d2a17527380419c 398 PIRSF PIRSF029347 1 374 6.2E-36 T 31-10-2018 IPR014555 RecF-like BRM88_24440 506c70f58adfc3518d2a17527380419c 398 Gene3D G3DSA:3.40.50.300 1 364 8.6E-22 T 31-10-2018 BRM88_21460 10e04fd61dd96184f8a1f1c86ef1a92c 261 Gene3D G3DSA:3.20.20.410 7 254 5.5E-44 T 31-10-2018 IPR036520 UPF0759 superfamily BRM88_21460 10e04fd61dd96184f8a1f1c86ef1a92c 261 Pfam PF01904 Protein of unknown function DUF72 34 250 6.3E-44 T 31-10-2018 IPR002763 Protein of unknown function DUF72 BRM88_21460 10e04fd61dd96184f8a1f1c86ef1a92c 261 SUPERFAMILY SSF117396 11 254 4.05E-58 T 31-10-2018 IPR036520 UPF0759 superfamily BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 SMART SM00642 96 453 1.1E-7 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 PIRSF PIRSF006337 7 582 7.6E-219 T 31-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Pfam PF00128 Alpha amylase, catalytic domain 125 213 4.5E-13 T 31-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Pfam PF11941 Domain of unknown function (DUF3459) 496 561 1.5E-6 T 31-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 21 552 5.8E-213 T 31-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Gene3D G3DSA:2.60.40.10 1 95 1.2E-24 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 SUPERFAMILY SSF81296 8 93 1.98E-19 T 31-10-2018 IPR014756 Immunoglobulin E-set BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Gene3D G3DSA:1.10.10.760 433 477 1.2E-159 T 31-10-2018 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 SUPERFAMILY SSF51445 96 506 1.67E-97 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Gene3D G3DSA:3.20.20.80 106 505 1.2E-159 T 31-10-2018 BRM88_00360 fd17477b507dd18806fafdcd074c6b23 585 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 73 1.8E-5 T 31-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 Pfam PF00563 EAL domain 162 395 5.5E-73 T 31-10-2018 IPR001633 EAL domain BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 Gene3D G3DSA:3.20.20.450 159 417 7.1E-87 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 SUPERFAMILY SSF52172 16 133 2.56E-20 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 SMART SM00052 156 400 1.1E-85 T 31-10-2018 IPR001633 EAL domain BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 Pfam PF00072 Response regulator receiver domain 16 131 5.1E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 SUPERFAMILY SSF141868 162 408 7.85E-79 T 31-10-2018 IPR035919 EAL domain superfamily BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 SMART SM00448 14 132 1.8E-12 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_07630 1996fe9f08f3f8f5f97067802aef18bc 427 Gene3D G3DSA:3.40.50.2300 15 142 2.1E-18 T 31-10-2018 BRM88_23200 936448aeb783d0f5dee6749347410bc2 131 Gene3D G3DSA:3.10.450.50 3 127 2.5E-34 T 31-10-2018 BRM88_23200 936448aeb783d0f5dee6749347410bc2 131 SUPERFAMILY SSF54427 8 126 1.06E-23 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_23200 936448aeb783d0f5dee6749347410bc2 131 Pfam PF11533 Protein of unknown function (DUF3225) 7 127 1.2E-39 T 31-10-2018 IPR024507 Protein of unknown function DUF3225 BRM88_22930 08a9ae81fd4fbb61b1204e1f93266cfd 95 Pfam PF07977 FabA-like domain 6 60 5.3E-7 T 31-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_22930 08a9ae81fd4fbb61b1204e1f93266cfd 95 PIRSF PIRSF030962 1 85 1.9E-9 T 31-10-2018 IPR016962 Dehydrase, ECs4332, predicted KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_22930 08a9ae81fd4fbb61b1204e1f93266cfd 95 SUPERFAMILY SSF54637 4 93 1.49E-15 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_22930 08a9ae81fd4fbb61b1204e1f93266cfd 95 Gene3D G3DSA:3.10.129.10 1 94 3.3E-19 T 31-10-2018 BRM88_06140 46cf57c05dde7d03290325417456df67 321 Pfam PF12760 Transposase zinc-ribbon domain 23 69 1.3E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_06140 46cf57c05dde7d03290325417456df67 321 Pfam PF12762 ISXO2-like transposase domain 137 282 2.7E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_06140 46cf57c05dde7d03290325417456df67 321 SMART SM01126 137 282 3.9E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_11345 5abf9ed4e5d3417ce39c519bf4e6b928 347 SUPERFAMILY SSF55909 4 342 7.5E-114 T 31-10-2018 BRM88_11345 5abf9ed4e5d3417ce39c519bf4e6b928 347 Gene3D G3DSA:3.75.10.10 5 346 3.6E-116 T 31-10-2018 BRM88_11345 5abf9ed4e5d3417ce39c519bf4e6b928 347 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 9 341 3.7E-108 T 31-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 BRM88_22915 37ece761737fd27c247ef9630289e1be 789 Gene3D G3DSA:1.20.1640.10 217 402 1.4E-5 T 31-10-2018 BRM88_22915 37ece761737fd27c247ef9630289e1be 789 SUPERFAMILY SSF82866 210 393 3.92E-20 T 31-10-2018 BRM88_22915 37ece761737fd27c247ef9630289e1be 789 Pfam PF03176 MMPL family 191 415 7.2E-7 T 31-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BRM88_22915 37ece761737fd27c247ef9630289e1be 789 SUPERFAMILY SSF82866 617 771 1.7E-17 T 31-10-2018 BRM88_18750 762e598af72fc6268ab8c5c4b1da70cb 357 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 2 350 1.4E-130 T 31-10-2018 IPR017740 Type VI secretion system-associated, ImpA BRM88_18750 762e598af72fc6268ab8c5c4b1da70cb 357 Pfam PF06812 ImpA, N-terminal, type VI secretion system 8 130 3.6E-37 T 31-10-2018 IPR010657 ImpA, N-terminal BRM88_06175 ef94a986d56e28b453063efd9c966ba1 219 SUPERFAMILY SSF56112 17 148 9.56E-15 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_06175 ef94a986d56e28b453063efd9c966ba1 219 Gene3D G3DSA:1.10.510.10 93 175 1.2E-6 T 31-10-2018 BRM88_18895 d157f85ab95373d5a6c64babc35d1246 556 Gene3D G3DSA:3.40.720.10 225 552 1.2E-81 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BRM88_18895 d157f85ab95373d5a6c64babc35d1246 556 Pfam PF00884 Sulfatase 247 533 9.5E-48 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BRM88_18895 d157f85ab95373d5a6c64babc35d1246 556 Pfam PF08019 Domain of unknown function (DUF1705) 68 216 5.7E-47 T 31-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 BRM88_18895 d157f85ab95373d5a6c64babc35d1246 556 SUPERFAMILY SSF53649 244 502 5.45E-18 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BRM88_13605 fa8e81c0f63db4444921285af6c8b286 188 Pfam PF16823 Atypical PilZ domain, cyclic di-GMP receptor 46 186 4.0E-48 T 31-10-2018 IPR031800 Cyclic di-GMP receptor, atypical PilZ domain BRM88_05230 0a07aeb29b0331317e33370cdb1e3aa7 218 SUPERFAMILY SSF53335 80 170 1.8E-12 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_05230 0a07aeb29b0331317e33370cdb1e3aa7 218 Gene3D G3DSA:3.40.50.150 24 178 1.7E-8 T 31-10-2018 BRM88_05230 0a07aeb29b0331317e33370cdb1e3aa7 218 PIRSF PIRSF028445 1 218 2.7E-127 T 31-10-2018 IPR016885 Uncharacterised conserved protein UCP028445 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 SUPERFAMILY SSF46626 199 320 3.63E-34 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 SUPERFAMILY SSF46626 48 200 3.56E-29 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 PIRSF PIRSF000294 17 328 3.1E-64 T 31-10-2018 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase GO:0016491|GO:0020037|GO:0055114 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 Pfam PF03150 Di-haem cytochrome c peroxidase 66 212 5.3E-29 T 31-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 Gene3D G3DSA:1.10.760.10 199 319 5.3E-78 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 Gene3D G3DSA:1.10.760.10 64 198 5.3E-78 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_16185 1bf73dddf0d1d7e571edd9aafa99e3fe 330 Pfam PF00034 Cytochrome c 221 316 1.1E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_13110 8332d29a49aa20b553aaf4512a00e24b 117 SMART SM01323 26 108 1.8E-44 T 31-10-2018 IPR003849 Preprotein translocase YajC BRM88_13110 8332d29a49aa20b553aaf4512a00e24b 117 PRINTS PR01853 Bacterial YajC preprotein translocase signature 66 84 1.9E-13 T 31-10-2018 IPR003849 Preprotein translocase YajC BRM88_13110 8332d29a49aa20b553aaf4512a00e24b 117 PRINTS PR01853 Bacterial YajC preprotein translocase signature 28 48 1.9E-13 T 31-10-2018 IPR003849 Preprotein translocase YajC BRM88_13110 8332d29a49aa20b553aaf4512a00e24b 117 Pfam PF02699 Preprotein translocase subunit 31 104 1.7E-28 T 31-10-2018 IPR003849 Preprotein translocase YajC BRM88_13110 8332d29a49aa20b553aaf4512a00e24b 117 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 29 108 4.1E-27 T 31-10-2018 IPR003849 Preprotein translocase YajC BRM88_18605 79b9a921df1d6b7f9c1c98567a6917c7 611 PIRSF PIRSF028304 1 610 5.1E-181 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_18605 79b9a921df1d6b7f9c1c98567a6917c7 611 Pfam PF05947 Type VI secretion system, TssF 5 608 1.9E-202 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_18605 79b9a921df1d6b7f9c1c98567a6917c7 611 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 4 610 3.7E-218 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 Pfam PF00355 Rieske [2Fe-2S] domain 38 109 3.6E-14 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 126 152 5.1E-9 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 82 102 5.1E-9 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 164 186 5.1E-9 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 12 37 5.1E-9 T 31-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 176 374 1.2E-13 T 31-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 SUPERFAMILY SSF55961 149 371 2.04E-27 T 31-10-2018 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 Gene3D G3DSA:2.102.10.10 25 151 2.5E-44 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 Gene3D G3DSA:3.90.380.10 4 351 2.5E-44 T 31-10-2018 BRM88_13660 165babeecc0637bc7dded7b0fb7e03b9 381 SUPERFAMILY SSF50022 4 142 4.06E-35 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_24150 bf90ceb80ce46cbcd1c01cb078d7bb6e 349 SUPERFAMILY SSF56935 31 349 2.64E-16 T 31-10-2018 BRM88_02865 e5d998cb25def8198e5762941a5802b4 110 Pfam PF03091 CutA1 divalent ion tolerance protein 9 104 4.9E-33 T 31-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 BRM88_02865 e5d998cb25def8198e5762941a5802b4 110 Gene3D G3DSA:3.30.70.120 3 110 1.5E-37 T 31-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BRM88_02865 e5d998cb25def8198e5762941a5802b4 110 SUPERFAMILY SSF54913 5 107 6.3E-36 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BRM88_04935 d59d273db21b88dfc8ebbc0bfdec4570 460 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 17 458 1.2E-223 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BRM88_04935 d59d273db21b88dfc8ebbc0bfdec4570 460 SUPERFAMILY SSF51569 14 454 5.05E-181 T 31-10-2018 BRM88_04935 d59d273db21b88dfc8ebbc0bfdec4570 460 Pfam PF01474 Class-II DAHP synthetase family 17 451 3.1E-187 T 31-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 27 240 9.9E-93 T 31-10-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 Pfam PF00775 Dioxygenase 68 235 3.8E-52 T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 SUPERFAMILY SSF49482 25 241 1.09E-69 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 89 117 - T 31-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 Gene3D G3DSA:2.60.130.10 18 242 3.4E-82 T 31-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 BRM88_02415 17fb29fcab1376551ed4fce7bfd18957 242 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 19 53 3.5E-9 T 31-10-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 BRM88_04110 0a4cda689ad93a87a5d0e01e511bc965 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.1E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_04110 0a4cda689ad93a87a5d0e01e511bc965 439 SUPERFAMILY SSF53098 19 403 1.52E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.0E-46 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 Gene3D G3DSA:3.40.47.10 258 401 1.1E-42 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 SUPERFAMILY SSF53901 213 400 8.64E-58 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 SMART SM00825 Beta-ketoacyl synthase 4 402 2.4E-12 T 31-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 SUPERFAMILY SSF53901 1 251 1.0E-64 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 31-10-2018 IPR018201 Beta-ketoacyl synthase, active site BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 Gene3D G3DSA:3.40.47.10 1 252 7.5E-66 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_03790 564c49a2020b5408113fe87f00741cd8 402 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 359 7.3E-24 T 31-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 SUPERFAMILY SSF103025 11 218 3.14E-41 T 31-10-2018 BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 Pfam PF01571 Aminomethyltransferase folate-binding domain 20 99 1.7E-5 T 31-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 Gene3D G3DSA:3.30.70.1400 19 104 1.5E-16 T 31-10-2018 BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 Gene3D G3DSA:2.40.30.160 172 276 2.0E-21 T 31-10-2018 BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 163 227 7.6E-21 T 31-10-2018 IPR017703 YgfZ/GcvT conserved site BRM88_12220 4c5170bb368dfc3d1a96241cac4f52e7 290 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 202 277 3.8E-6 T 31-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BRM88_14660 aa2512ed955d80b76624432ee196537b 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 263 2.1E-16 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_14660 aa2512ed955d80b76624432ee196537b 276 Gene3D G3DSA:1.10.3720.10 15 264 1.1E-49 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_14660 aa2512ed955d80b76624432ee196537b 276 SUPERFAMILY SSF161098 22 260 2.35E-49 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 SUPERFAMILY SSF55205 1 422 1.83E-143 T 31-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 Gene3D G3DSA:3.65.10.10 21 235 8.4E-169 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 422 2.5E-176 T 31-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 423 45.283 T 31-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 413 2.1E-113 T 31-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BRM88_06620 3310b7f673e06a52a7503f73d25036bc 424 Gene3D G3DSA:3.65.10.10 6 420 8.4E-169 T 31-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 Pfam PF01522 Polysaccharide deacetylase 95 260 5.2E-26 T 31-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 311 604 1.0E-113 T 31-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 Gene3D G3DSA:3.20.20.370 33 299 6.3E-69 T 31-10-2018 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 SUPERFAMILY SSF88713 59 262 7.79E-35 T 31-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 39 624 1.2E-246 T 31-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 Gene3D G3DSA:3.20.20.80 303 468 2.4E-63 T 31-10-2018 BRM88_20885 e91ea5cae665a79903b5046cedbac23e 632 Gene3D G3DSA:3.20.20.80 469 631 4.2E-48 T 31-10-2018 BRM88_15930 89b8aa4a5d124ed996ac2757937980c6 370 Gene3D G3DSA:3.40.50.2000 172 344 1.1E-45 T 31-10-2018 BRM88_15930 89b8aa4a5d124ed996ac2757937980c6 370 Gene3D G3DSA:3.40.50.2000 30 360 1.1E-45 T 31-10-2018 BRM88_15930 89b8aa4a5d124ed996ac2757937980c6 370 SUPERFAMILY SSF53756 22 363 6.0E-57 T 31-10-2018 BRM88_15930 89b8aa4a5d124ed996ac2757937980c6 370 Pfam PF00534 Glycosyl transferases group 1 192 339 4.5E-23 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_15930 89b8aa4a5d124ed996ac2757937980c6 370 Pfam PF13579 Glycosyl transferase 4-like domain 23 168 5.1E-11 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 TIGRFAM TIGR00337 PyrG: CTP synthase 4 538 1.3E-238 T 31-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 SUPERFAMILY SSF52540 2 266 2.72E-117 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 Gene3D G3DSA:3.40.50.880 288 546 2.9E-96 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 Pfam PF06418 CTP synthase N-terminus 5 265 8.7E-121 T 31-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 Gene3D G3DSA:3.40.50.300 1 285 3.2E-123 T 31-10-2018 BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 SUPERFAMILY SSF52317 290 542 2.21E-80 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 Pfam PF00117 Glutamine amidotransferase class-I 303 537 1.7E-53 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_15815 c65f129796d9fb3f9c6b9c9c80f5edae 554 Hamap MF_01227 CTP synthase [pyrG]. 2 543 50.905 T 31-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BRM88_14860 850a5b56882e193bffeb8cf98375e7b3 378 Pfam PF04966 Carbohydrate-selective porin, OprB family 9 377 1.6E-88 T 31-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 BRM88_14860 850a5b56882e193bffeb8cf98375e7b3 378 Gene3D G3DSA:2.40.160.180 1 377 2.6E-98 T 31-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily BRM88_21345 58427d5bc8ac7927fde35757f9165511 321 Pfam PF13280 WYL domain 144 312 5.7E-38 T 31-10-2018 IPR026881 WYL domain BRM88_21345 58427d5bc8ac7927fde35757f9165511 321 Gene3D G3DSA:1.10.10.10 1 63 6.6E-8 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_21345 58427d5bc8ac7927fde35757f9165511 321 SUPERFAMILY SSF46785 2 47 2.18E-6 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_21345 58427d5bc8ac7927fde35757f9165511 321 Pfam PF08279 HTH domain 6 61 3.4E-12 T 31-10-2018 IPR013196 Helix-turn-helix, type 11 BRM88_00485 23d6f74a9e160ed71926b9cb6ac6cc6b 151 TIGRFAM TIGR02561 HrpB1_HrpK: type III secretion protein HrpB1/HrpK 2 145 6.7E-59 T 31-10-2018 IPR013394 Type III secretion system, HrpB1/HrpK BRM88_00485 23d6f74a9e160ed71926b9cb6ac6cc6b 151 Pfam PF09613 Bacterial type III secretion protein (HrpB1_HrpK) 2 124 2.4E-44 T 31-10-2018 IPR013394 Type III secretion system, HrpB1/HrpK BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 38 112 1.8E-9 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 131 223 5.2E-20 T 31-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Gene3D G3DSA:1.10.287.460 131 211 2.0E-13 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Gene3D G3DSA:1.10.287.460 38 130 1.4E-12 T 31-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Gene3D G3DSA:3.10.50.40 212 319 2.1E-39 T 31-10-2018 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 SUPERFAMILY SSF54534 161 320 3.34E-51 T 31-10-2018 BRM88_10750 96f706d40a9fb94f8ba7f5581669f4b1 321 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 232 316 6.9E-25 T 31-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BRM88_04805 3e46f122bb121e03b5bd9640d4deebb1 989 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 169 1.4E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_04805 3e46f122bb121e03b5bd9640d4deebb1 989 Gene3D G3DSA:2.170.130.10 38 173 4.8E-31 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_04805 3e46f122bb121e03b5bd9640d4deebb1 989 Gene3D G3DSA:2.40.170.20 253 483 1.6E-5 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_04805 3e46f122bb121e03b5bd9640d4deebb1 989 SUPERFAMILY SSF56935 44 989 9.89E-82 T 31-10-2018 BRM88_04805 3e46f122bb121e03b5bd9640d4deebb1 989 Pfam PF00593 TonB dependent receptor 433 983 7.6E-38 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 40 250 1.4E-50 T 31-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 Pfam PF13432 Tetratricopeptide repeat 161 216 0.004 T 31-10-2018 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 Pfam PF13432 Tetratricopeptide repeat 51 113 4.3E-6 T 31-10-2018 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 SMART SM00028 81 114 34.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 SMART SM00028 47 80 160.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 SMART SM00028 185 218 320.0 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 SMART SM00028 151 184 0.041 T 31-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 Gene3D G3DSA:1.25.40.10 46 257 1.2E-39 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_13340 6d36272df1e3fa368a941acb0098bde8 262 SUPERFAMILY SSF48452 64 253 1.46E-19 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_09995 00b89f92d97109b7a1dd65fa6e3c0443 115 Pfam PF01042 Endoribonuclease L-PSP 10 113 9.0E-23 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BRM88_09995 00b89f92d97109b7a1dd65fa6e3c0443 115 SUPERFAMILY SSF55298 3 114 4.71E-29 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_09995 00b89f92d97109b7a1dd65fa6e3c0443 115 Gene3D G3DSA:3.30.1330.40 1 115 1.4E-37 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_16875 aad4642359fd57c728ea0d024d12a1dc 199 Pfam PF13338 Transcriptional regulator, AbiEi antitoxin 7 52 1.5E-9 T 31-10-2018 IPR025159 Transcriptional regulator, AbiEi antitoxin BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 Gene3D G3DSA:3.60.20.40 386 583 1.4E-53 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 Pfam PF01019 Gamma-glutamyltranspeptidase 62 578 4.8E-166 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 SUPERFAMILY SSF56235 41 578 3.09E-166 T 31-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 474 491 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 451 466 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 69 94 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 161 180 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 428 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 275 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 143 161 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 289 308 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 386 404 1.6E-65 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 Gene3D G3DSA:1.10.246.130 275 385 6.7E-35 T 31-10-2018 BRM88_13200 b7369df4ac3ca35636097497b23161fb 597 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 49 577 1.0E-140 T 31-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BRM88_11160 72eeccaf2f3a6e206e732d932defdf5e 195 Pfam PF00293 NUDIX domain 68 177 5.3E-6 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_11160 72eeccaf2f3a6e206e732d932defdf5e 195 SUPERFAMILY SSF55811 60 192 3.52E-14 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_11160 72eeccaf2f3a6e206e732d932defdf5e 195 Gene3D G3DSA:3.90.79.10 17 195 3.7E-35 T 31-10-2018 BRM88_01350 6a85772ee936799e18f6b0ee5fb23161 357 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 47 321 5.7E-53 T 31-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BRM88_01350 6a85772ee936799e18f6b0ee5fb23161 357 Gene3D G3DSA:3.20.20.80 41 352 3.1E-107 T 31-10-2018 BRM88_01350 6a85772ee936799e18f6b0ee5fb23161 357 SUPERFAMILY SSF51445 43 345 1.63E-80 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_01350 6a85772ee936799e18f6b0ee5fb23161 357 ProSitePatterns PS00659 Glycosyl hydrolases family 5 signature. 167 176 - T 31-10-2018 IPR018087 Glycoside hydrolase, family 5, conserved site GO:0004553|GO:0005975 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 471 1.7E-156 T 31-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 Pfam PF00571 CBS domain 148 201 2.9E-5 T 31-10-2018 IPR000644 CBS domain BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 Pfam PF00571 CBS domain 95 139 6.2E-11 T 31-10-2018 IPR000644 CBS domain BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 SUPERFAMILY SSF54631 94 202 3.92E-27 T 31-10-2018 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 31-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 SUPERFAMILY SSF51412 2 475 1.31E-123 T 31-10-2018 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 SMART SM00116 96 143 3.8E-11 T 31-10-2018 IPR000644 CBS domain BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 SMART SM00116 157 205 1.5E-7 T 31-10-2018 IPR000644 CBS domain BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 484 81.324 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 Gene3D G3DSA:3.20.20.70 1 484 2.9E-205 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 PIRSF PIRSF000130 1 485 2.1E-200 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 SMART SM01240 7 471 0.0 T 31-10-2018 BRM88_11420 dd74f5e57d7319f866f76cc02d707e34 485 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 452 7.5E-187 T 31-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BRM88_09505 0f8982324a637c931b4e434fbcecabb2 343 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 13 337 20.206 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 BRM88_09505 0f8982324a637c931b4e434fbcecabb2 343 PIRSF PIRSF000443 1 343 7.4E-74 T 31-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 BRM88_09505 0f8982324a637c931b4e434fbcecabb2 343 Pfam PF00561 alpha/beta hydrolase fold 60 324 9.0E-19 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_09505 0f8982324a637c931b4e434fbcecabb2 343 SUPERFAMILY SSF53474 44 336 1.05E-49 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09505 0f8982324a637c931b4e434fbcecabb2 343 Gene3D G3DSA:3.40.50.1820 39 342 8.4E-68 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_00515 3b5aef71607f414deaa76245fbd88f41 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 4.7E-16 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_00515 3b5aef71607f414deaa76245fbd88f41 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 4.7E-16 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_00515 3b5aef71607f414deaa76245fbd88f41 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 4.7E-16 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_00515 3b5aef71607f414deaa76245fbd88f41 86 Pfam PF01313 Bacterial export proteins, family 3 6 76 3.3E-19 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_00515 3b5aef71607f414deaa76245fbd88f41 86 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 83 1.7E-26 T 31-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 BRM88_12315 3bd9c4e8e0ea38e45d4b296b3359c491 324 SUPERFAMILY SSF55073 171 322 4.24E-40 T 31-10-2018 IPR029787 Nucleotide cyclase BRM88_12315 3bd9c4e8e0ea38e45d4b296b3359c491 324 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 162 323 1.3E-40 T 31-10-2018 IPR000160 GGDEF domain BRM88_12315 3bd9c4e8e0ea38e45d4b296b3359c491 324 Pfam PF00990 Diguanylate cyclase, GGDEF domain 166 318 8.8E-37 T 31-10-2018 IPR000160 GGDEF domain BRM88_12315 3bd9c4e8e0ea38e45d4b296b3359c491 324 Gene3D G3DSA:3.30.70.270 153 323 4.9E-47 T 31-10-2018 BRM88_12315 3bd9c4e8e0ea38e45d4b296b3359c491 324 SMART SM00267 155 323 3.9E-50 T 31-10-2018 IPR000160 GGDEF domain BRM88_03295 1a918022918e767c358e487ba96feb37 285 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 31 238 6.1E-48 T 31-10-2018 IPR018713 Domain of unknown function DUF2236 BRM88_18600 7fe284cb4bcee3dce9cb73e14ef7ba43 363 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 344 1.3E-107 T 31-10-2018 IPR010732 Type VI secretion, TssG-like BRM88_18600 7fe284cb4bcee3dce9cb73e14ef7ba43 363 Pfam PF06996 Type VI secretion, TssG 19 343 1.1E-90 T 31-10-2018 IPR010732 Type VI secretion, TssG-like BRM88_12805 d59a18d3d95dfc5c43734ef00c1b058a 112 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 31-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BRM88_12805 d59a18d3d95dfc5c43734ef00c1b058a 112 SUPERFAMILY SSF89360 1 96 1.83E-27 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_12805 d59a18d3d95dfc5c43734ef00c1b058a 112 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 3.0E-17 T 31-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BRM88_12805 d59a18d3d95dfc5c43734ef00c1b058a 112 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 106 7.8E-32 T 31-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BRM88_12805 d59a18d3d95dfc5c43734ef00c1b058a 112 Gene3D G3DSA:2.60.300.12 2 107 1.3E-32 T 31-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BRM88_05980 edf5460f6e01c0607b93c6aa6d94d2d6 105 Pfam PF12395 Protein of unknown function 23 93 1.4E-8 T 31-10-2018 IPR022123 Protein of unknown function DUF3658 BRM88_05980 edf5460f6e01c0607b93c6aa6d94d2d6 105 ProDom PD069398 YJEN 22 98 4.0E-5 T 31-10-2018 IPR020528 Uncharacterised protein family YjeN BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 PIRSF PIRSF002756 6 355 2.1E-109 T 31-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 45 353 2.1E-126 T 31-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 Gene3D G3DSA:3.40.190.10 119 295 1.8E-131 T 31-10-2018 BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 Gene3D G3DSA:3.40.190.10 46 342 1.8E-131 T 31-10-2018 BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 SUPERFAMILY SSF53850 45 353 2.53E-97 T 31-10-2018 BRM88_13015 0a99a7821ca10052b2982d4080bf4506 357 Pfam PF12849 PBP superfamily domain 41 325 7.2E-62 T 31-10-2018 IPR024370 PBP domain BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 Gene3D G3DSA:1.10.10.10 1 162 1.9E-47 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 Pfam PF12802 MarR family 45 104 7.9E-12 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 79 113 - T 31-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 130 150 1.7E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 1.7E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 1.7E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 1.7E-10 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 SMART SM00347 40 140 4.6E-16 T 31-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BRM88_21720 9ac159cc1049bb04f358b1763e905368 162 SUPERFAMILY SSF46785 9 152 3.51E-32 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_23405 3012d79f912a880376645ef8718a360c 250 Pfam PF00117 Glutamine amidotransferase class-I 54 193 1.4E-20 T 31-10-2018 IPR017926 Glutamine amidotransferase BRM88_23405 3012d79f912a880376645ef8718a360c 250 Gene3D G3DSA:3.40.50.880 13 244 2.1E-50 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_23405 3012d79f912a880376645ef8718a360c 250 SUPERFAMILY SSF52317 35 205 4.19E-39 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_09255 d094c8ab048e99f7763b62f755ec8e34 123 SUPERFAMILY SSF51230 63 106 1.33E-5 T 31-10-2018 IPR011053 Single hybrid motif BRM88_09255 d094c8ab048e99f7763b62f755ec8e34 123 Pfam PF13533 Biotin-lipoyl like 69 101 9.7E-7 T 31-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BRM88_09255 d094c8ab048e99f7763b62f755ec8e34 123 Gene3D G3DSA:2.40.50.100 67 107 3.4E-7 T 31-10-2018 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 26 484 2.8E-157 T 31-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 SUPERFAMILY SSF56954 12 486 4.45E-101 T 31-10-2018 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 Gene3D G3DSA:1.20.1600.10 74 484 4.3E-115 T 31-10-2018 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 Pfam PF02321 Outer membrane efflux protein 83 273 3.2E-25 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 Pfam PF02321 Outer membrane efflux protein 306 482 8.8E-25 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_10435 3658acd4840ee55b02097fde32470ef6 505 Gene3D G3DSA:2.20.200.10 119 369 4.3E-115 T 31-10-2018 BRM88_04270 cd4c1e01277c50d9c7c5a9ac7eaf60bd 169 Pfam PF12019 Type II transport protein GspH 63 153 1.2E-5 T 31-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 BRM88_04270 cd4c1e01277c50d9c7c5a9ac7eaf60bd 169 SUPERFAMILY SSF54523 26 148 3.85E-9 T 31-10-2018 BRM88_04270 cd4c1e01277c50d9c7c5a9ac7eaf60bd 169 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 21 156 3.1E-13 T 31-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 Pfam PF00593 TonB dependent receptor 265 793 5.4E-45 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 SUPERFAMILY SSF56935 36 795 1.98E-105 T 31-10-2018 BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 171 9.3E-23 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 Gene3D G3DSA:2.170.130.10 31 175 5.5E-35 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 43 - T 31-10-2018 IPR010916 TonB box, conserved site BRM88_07000 72411b6ed0b8a2bbb57b6dec8132365d 795 Gene3D G3DSA:2.40.170.20 181 771 1.9E-54 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_23705 d8936de0f496c76e0b3439c2afc48009 252 Pfam PF15579 Immunity protein 52 168 241 9.1E-11 T 31-10-2018 IPR028969 Immunity protein 52 BRM88_21920 3613cc6e479bd01720044dc68299e515 438 Gene3D G3DSA:1.20.1740.10 14 438 2.7E-92 T 31-10-2018 BRM88_21920 3613cc6e479bd01720044dc68299e515 438 PIRSF PIRSF006060 1 437 3.4E-71 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_21920 3613cc6e479bd01720044dc68299e515 438 Pfam PF13520 Amino acid permease 18 406 6.1E-49 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_05570 5e6ad28c9a2aed124f274ec9fb1bcbdd 226 SUPERFAMILY SSF52317 1 223 2.38E-77 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_05570 5e6ad28c9a2aed124f274ec9fb1bcbdd 226 Gene3D G3DSA:3.40.50.880 1 224 2.9E-82 T 31-10-2018 IPR029062 Class I glutamine amidotransferase-like BRM88_05570 5e6ad28c9a2aed124f274ec9fb1bcbdd 226 Pfam PF01965 DJ-1/PfpI family 25 222 8.8E-16 T 31-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 Gene3D G3DSA:3.40.50.620 3 185 8.1E-42 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 Pfam PF01012 Electron transfer flavoprotein domain 4 174 1.2E-31 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 SUPERFAMILY SSF52467 191 312 1.47E-46 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 SUPERFAMILY SSF52402 3 181 2.3E-42 T 31-10-2018 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 Gene3D G3DSA:3.40.50.1220 188 313 3.5E-54 T 31-10-2018 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 SMART SM00893 4 186 4.4E-38 T 31-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 194 276 5.5E-35 T 31-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 257 283 - T 31-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 BRM88_03960 4898e79ad1b32f5ac1ece9afbfbd16fd 313 PIRSF PIRSF000089 1 313 4.0E-103 T 31-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 BRM88_23465 7460b0ca80798e408aaf203cd00248a5 301 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 300 40.119 T 31-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 BRM88_23465 7460b0ca80798e408aaf203cd00248a5 301 Pfam PF04381 Putative exonuclease, RdgC 1 296 1.4E-98 T 31-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 Gene3D G3DSA:1.10.150.240 26 91 9.7E-47 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 11 22 6.1E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 6.1E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 6.1E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 6.1E-7 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 72 190 3.2E-16 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 Gene3D G3DSA:3.40.50.1000 13 201 9.7E-47 T 31-10-2018 IPR023214 HAD superfamily BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 SUPERFAMILY SSF56784 10 220 3.42E-47 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_03525 f7ab19cd5cae0b8cb2144e7fa6b287eb 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 190 6.2E-25 T 31-10-2018 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 31-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 SUPERFAMILY SSF47917 349 464 2.51E-54 T 31-10-2018 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Gene3D G3DSA:2.40.10.170 1 73 1.1E-27 T 31-10-2018 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.311 T 31-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Gene3D G3DSA:1.10.1140.10 349 468 6.0E-60 T 31-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 SUPERFAMILY SSF52540 75 352 2.25E-89 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.2E-61 T 31-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 SMART SM00382 140 331 0.0015 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Gene3D G3DSA:3.40.50.300 74 348 2.6E-110 T 31-10-2018 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 SUPERFAMILY SSF50615 1 71 6.54E-24 T 31-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 70 7.3E-18 T 31-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_03660 805cc48e6f4459364155ada5831d68df 468 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 1.1E-252 T 31-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 PIRSF PIRSF028774 1 347 2.1E-161 T 31-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 Gene3D G3DSA:3.40.50.150 172 346 1.3E-51 T 31-10-2018 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 SUPERFAMILY SSF53335 181 291 4.14E-16 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 347 77.764 T 31-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 Pfam PF01728 FtsJ-like methyltransferase 182 274 1.9E-7 T 31-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 Gene3D G3DSA:3.30.2300.20 77 171 7.9E-30 T 31-10-2018 BRM88_19875 7c1117de18a0c5eafb092787365bde92 347 Gene3D G3DSA:3.30.70.2810 1 76 2.9E-25 T 31-10-2018 BRM88_07185 9f20eefe5b535216022736352045c8ae 420 SUPERFAMILY SSF101960 16 399 1.44E-92 T 31-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BRM88_07185 9f20eefe5b535216022736352045c8ae 420 Pfam PF01458 Uncharacterized protein family (UPF0051) 167 390 5.9E-62 T 31-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BRM88_07185 9f20eefe5b535216022736352045c8ae 420 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 131 399 3.5E-84 T 31-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 BRM88_19105 ba6e358bf3f043afa6ade55e87981f72 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 21.941 T 31-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BRM88_19105 ba6e358bf3f043afa6ade55e87981f72 99 Pfam PF00276 Ribosomal protein L23 10 95 1.5E-28 T 31-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BRM88_19105 ba6e358bf3f043afa6ade55e87981f72 99 SUPERFAMILY SSF54189 6 97 4.68E-28 T 31-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_19105 ba6e358bf3f043afa6ade55e87981f72 99 Gene3D G3DSA:3.30.70.330 1 99 1.3E-32 T 31-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BRM88_21700 c21afbee91c81a69b53afaa23bc392f5 117 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 95 2.6E-23 T 31-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 BRM88_21700 c21afbee91c81a69b53afaa23bc392f5 117 Pfam PF03334 Na+/H+ antiporter subunit 12 92 6.4E-24 T 31-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 BRM88_08790 dcf9361e068d549c5bbbb0315218508a 145 SUPERFAMILY SSF47413 2 61 4.83E-9 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_08790 dcf9361e068d549c5bbbb0315218508a 145 SMART SM00530 6 60 0.0072 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_08790 dcf9361e068d549c5bbbb0315218508a 145 Gene3D G3DSA:1.10.260.40 1 63 4.2E-8 T 31-10-2018 BRM88_23890 5f48374c7877fd59bffefc712f4006cf 267 SUPERFAMILY SSF69593 22 203 4.45E-23 T 31-10-2018 BRM88_23890 5f48374c7877fd59bffefc712f4006cf 267 Pfam PF01553 Acyltransferase 87 199 5.7E-22 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_23890 5f48374c7877fd59bffefc712f4006cf 267 SMART SM00563 90 202 2.5E-27 T 31-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BRM88_12890 fa19691f972979620b8eb685a18d7370 258 Hamap MF_00361 NAD kinase [nadK]. 5 257 21.653 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BRM88_12890 fa19691f972979620b8eb685a18d7370 258 SUPERFAMILY SSF111331 29 245 5.76E-55 T 31-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BRM88_12890 fa19691f972979620b8eb685a18d7370 258 Gene3D G3DSA:3.40.50.10330 29 235 5.3E-39 T 31-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BRM88_12890 fa19691f972979620b8eb685a18d7370 258 Pfam PF01513 ATP-NAD kinase 21 219 4.3E-16 T 31-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BRM88_12890 fa19691f972979620b8eb685a18d7370 258 Gene3D G3DSA:2.60.200.30 98 233 5.3E-39 T 31-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BRM88_08040 53817b2c7854052bd98d981d776d2ec2 166 Pfam PF03737 Aldolase/RraA 5 152 3.9E-40 T 31-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein BRM88_08040 53817b2c7854052bd98d981d776d2ec2 166 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 153 7.7E-65 T 31-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 BRM88_08040 53817b2c7854052bd98d981d776d2ec2 166 Gene3D G3DSA:3.50.30.40 1 164 1.0E-60 T 31-10-2018 BRM88_08040 53817b2c7854052bd98d981d776d2ec2 166 SUPERFAMILY SSF89562 3 157 2.88E-47 T 31-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily BRM88_07290 3b06c273021b238df6ede339c1445c58 218 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 34 206 2.3E-31 T 31-10-2018 IPR003740 Uncharacterised membrane protein YitT BRM88_09730 d3e998451de54fa3b8d51562ea21299b 334 SUPERFAMILY SSF51445 1 297 1.9E-78 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09730 d3e998451de54fa3b8d51562ea21299b 334 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 332 44.73 T 31-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BRM88_09730 d3e998451de54fa3b8d51562ea21299b 334 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 3 292 6.1E-78 T 31-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BRM88_09730 d3e998451de54fa3b8d51562ea21299b 334 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 233 250 - T 31-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BRM88_09730 d3e998451de54fa3b8d51562ea21299b 334 Gene3D G3DSA:3.20.20.300 1 311 4.4E-106 T 31-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BRM88_07915 e9bf1a4a816a16928a79b384b636c508 793 SUPERFAMILY SSF56935 35 793 5.72E-90 T 31-10-2018 BRM88_07915 e9bf1a4a816a16928a79b384b636c508 793 Gene3D G3DSA:2.40.170.20 179 793 2.4E-61 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_07915 e9bf1a4a816a16928a79b384b636c508 793 Gene3D G3DSA:2.170.130.10 34 178 9.1E-16 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_07915 e9bf1a4a816a16928a79b384b636c508 793 Pfam PF00593 TonB dependent receptor 368 792 4.0E-28 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_07915 e9bf1a4a816a16928a79b384b636c508 793 Pfam PF07715 TonB-dependent Receptor Plug Domain 56 166 1.1E-12 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_11175 48d1bb971781770f259a3185d72bb365 99 Pfam PF09498 Protein of unknown function (DUF2388) 29 98 1.6E-23 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 BRM88_11175 48d1bb971781770f259a3185d72bb365 99 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 99 1.5E-28 T 31-10-2018 IPR012661 Conserved hypothetical protein CHP02448 BRM88_04690 da89f0d11bb1c4af2ae09c9e40d9cbb0 370 Gene3D G3DSA:3.40.50.2000 185 349 2.5E-21 T 31-10-2018 BRM88_04690 da89f0d11bb1c4af2ae09c9e40d9cbb0 370 SUPERFAMILY SSF53756 5 368 6.28E-52 T 31-10-2018 BRM88_04690 da89f0d11bb1c4af2ae09c9e40d9cbb0 370 Pfam PF13439 Glycosyltransferase Family 4 16 169 1.0E-24 T 31-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BRM88_04690 da89f0d11bb1c4af2ae09c9e40d9cbb0 370 Pfam PF00534 Glycosyl transferases group 1 193 341 4.0E-13 T 31-10-2018 IPR001296 Glycosyl transferase, family 1 BRM88_04690 da89f0d11bb1c4af2ae09c9e40d9cbb0 370 Gene3D G3DSA:3.40.50.2000 6 184 3.5E-23 T 31-10-2018 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 Pfam PF02253 Phospholipase A1 111 373 1.7E-104 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 SUPERFAMILY SSF56931 112 377 1.29E-90 T 31-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 Gene3D G3DSA:2.40.230.10 114 377 2.7E-89 T 31-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 346 366 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 185 201 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 208 227 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 238 252 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 324 341 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 253 271 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 163 180 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_12345 559ba17d659376f8466ade86c5dc6ecf 377 PRINTS PR01486 Bacterial phospholipase A1 protein signature 288 306 3.6E-35 T 31-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 Gene3D G3DSA:3.40.50.970 24 239 7.8E-19 T 31-10-2018 BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 SUPERFAMILY SSF52518 67 214 2.62E-12 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 752 939 2.7E-22 T 31-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 SUPERFAMILY SSF52518 458 646 5.21E-12 T 31-10-2018 IPR029061 Thiamin diphosphate-binding fold BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 SUPERFAMILY SSF53323 744 962 1.7E-29 T 31-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 Gene3D G3DSA:3.40.920.10 741 944 5.3E-19 T 31-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 BRM88_23930 deeb005ff908a5a9a0139259f5f94362 1235 SUPERFAMILY SSF52922 285 412 5.97E-7 T 31-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BRM88_13070 ee2b298eafc2370e31cefd7a25681476 439 SUPERFAMILY SSF53098 8 403 3.49E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_13070 ee2b298eafc2370e31cefd7a25681476 439 Pfam PF13546 DDE superfamily endonuclease 18 291 7.6E-89 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_04875 1ab766b2c863b1f8717f7f2e10ea8c5e 198 SMART SM00464 12 198 8.2E-5 T 31-10-2018 IPR003111 Lon, substrate-binding domain BRM88_04875 1ab766b2c863b1f8717f7f2e10ea8c5e 198 SUPERFAMILY SSF88697 13 198 2.73E-42 T 31-10-2018 IPR015947 PUA-like superfamily BRM88_04875 1ab766b2c863b1f8717f7f2e10ea8c5e 198 Gene3D G3DSA:1.10.4060.10 122 198 6.8E-8 T 31-10-2018 BRM88_04875 1ab766b2c863b1f8717f7f2e10ea8c5e 198 Gene3D G3DSA:2.30.130.40 10 119 9.2E-31 T 31-10-2018 BRM88_04875 1ab766b2c863b1f8717f7f2e10ea8c5e 198 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 198 4.3E-16 T 31-10-2018 IPR003111 Lon, substrate-binding domain BRM88_13130 9db5d4674c182d12b72ab20a414cd692 498 Pfam PF00202 Aminotransferase class-III 84 486 5.2E-35 T 31-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BRM88_13130 9db5d4674c182d12b72ab20a414cd692 498 SUPERFAMILY SSF53383 78 488 7.86E-53 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_13130 9db5d4674c182d12b72ab20a414cd692 498 Gene3D G3DSA:3.90.1150.10 91 476 4.2E-57 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_13130 9db5d4674c182d12b72ab20a414cd692 498 Gene3D G3DSA:3.40.640.10 119 389 4.2E-57 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_02955 3f23f8082845643fd0b267c7575b6e7f 187 SUPERFAMILY SSF55821 7 185 7.94E-50 T 31-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BRM88_02955 3f23f8082845643fd0b267c7575b6e7f 187 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 4 186 38.535 T 31-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 BRM88_02955 3f23f8082845643fd0b267c7575b6e7f 187 Gene3D G3DSA:3.90.870.10 4 186 2.4E-55 T 31-10-2018 BRM88_02955 3f23f8082845643fd0b267c7575b6e7f 187 Pfam PF01300 Telomere recombination 14 186 1.0E-39 T 31-10-2018 IPR006070 YrdC-like domain GO:0003725 BRM88_23000 632ccc59686024b68239be176faf8b69 153 Gene3D G3DSA:1.20.120.1630 5 153 4.7E-21 T 31-10-2018 BRM88_23000 632ccc59686024b68239be176faf8b69 153 Pfam PF04191 Phospholipid methyltransferase 39 136 6.0E-14 T 31-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 BRM88_23000 632ccc59686024b68239be176faf8b69 153 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 123 153 0.004 T 31-10-2018 BRM88_07440 de8dab4d06abca7cbbc973f17a243bc7 74 Pfam PF04328 Selenoprotein, putative 15 74 4.1E-26 T 31-10-2018 IPR007423 Selenoprotein, putative BRM88_01200 95134491ab8273516353f58ccd20f54f 336 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 66 308 3.4E-42 T 31-10-2018 IPR005519 Acid phosphatase, class B-like BRM88_01200 95134491ab8273516353f58ccd20f54f 336 PIRSF PIRSF019271 33 336 9.7E-101 T 31-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 BRM88_01200 95134491ab8273516353f58ccd20f54f 336 SUPERFAMILY SSF56784 127 315 1.25E-30 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_01200 95134491ab8273516353f58ccd20f54f 336 Gene3D G3DSA:3.40.50.1000 66 336 4.1E-81 T 31-10-2018 IPR023214 HAD superfamily BRM88_16765 1453c301d768fa425373491bb9bcf4d0 538 Gene3D G3DSA:3.40.309.10 271 461 1.8E-142 T 31-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BRM88_16765 1453c301d768fa425373491bb9bcf4d0 538 Pfam PF00171 Aldehyde dehydrogenase family 29 429 2.6E-44 T 31-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BRM88_16765 1453c301d768fa425373491bb9bcf4d0 538 SUPERFAMILY SSF53720 30 490 4.84E-73 T 31-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BRM88_16765 1453c301d768fa425373491bb9bcf4d0 538 Gene3D G3DSA:3.40.605.10 53 527 1.8E-142 T 31-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BRM88_19375 41897726117dfd685b48e7a59f2b2416 497 PIRSF PIRSF000204 9 448 2.3E-146 T 31-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 BRM88_19375 41897726117dfd685b48e7a59f2b2416 497 SUPERFAMILY SSF52467 274 447 1.26E-69 T 31-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BRM88_19375 41897726117dfd685b48e7a59f2b2416 497 Pfam PF02233 NAD(P) transhydrogenase beta subunit 28 444 3.9E-156 T 31-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BRM88_19375 41897726117dfd685b48e7a59f2b2416 497 Gene3D G3DSA:3.40.50.1220 265 449 6.0E-79 T 31-10-2018 BRM88_00050 3e6ae3fe4b0eaae262b43d47eeae3103 253 Pfam PF01618 MotA/TolQ/ExbB proton channel family 118 236 8.2E-37 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BRM88_00635 7ce39730a40c1525221221439cc7ac6b 295 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 120 1.3E-10 T 31-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BRM88_00635 7ce39730a40c1525221221439cc7ac6b 295 Pfam PF08338 Domain of unknown function (DUF1731) 247 292 3.1E-19 T 31-10-2018 IPR013549 Domain of unknown function DUF1731 BRM88_00635 7ce39730a40c1525221221439cc7ac6b 295 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 4 289 3.7E-101 T 31-10-2018 IPR010099 Epimerase family protein SDR39U1 BRM88_00635 7ce39730a40c1525221221439cc7ac6b 295 Gene3D G3DSA:3.40.50.720 1 283 2.2E-74 T 31-10-2018 BRM88_00635 7ce39730a40c1525221221439cc7ac6b 295 SUPERFAMILY SSF51735 1 291 3.66E-41 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_10765 b2fe30a29d9b608d7d541b1ffef4bf3d 250 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 107 250 2.0E-26 T 31-10-2018 IPR018636 Protein of unknown function DUF2058 BRM88_10800 8941cc691611f4f440e2e43bbfccab26 379 PIRSF PIRSF037505 94 179 5.0E-4 T 31-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 BRM88_10800 8941cc691611f4f440e2e43bbfccab26 379 PIRSF PIRSF037505 321 374 0.002 T 31-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 BRM88_10800 8941cc691611f4f440e2e43bbfccab26 379 Gene3D G3DSA:3.20.20.330 22 376 1.8E-127 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BRM88_10800 8941cc691611f4f440e2e43bbfccab26 379 SUPERFAMILY SSF82282 28 375 3.01E-100 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BRM88_10800 8941cc691611f4f440e2e43bbfccab26 379 Pfam PF02574 Homocysteine S-methyltransferase 37 363 8.3E-81 T 31-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BRM88_11410 34e661779eb42bdd59445afda426f4b4 106 SUPERFAMILY SSF158757 9 84 1.28E-33 T 31-10-2018 IPR036810 SMc04008-like superfamily BRM88_11410 34e661779eb42bdd59445afda426f4b4 106 Pfam PF06844 Protein of unknown function (DUF1244) 34 99 4.4E-37 T 31-10-2018 IPR023163 SMc04008-like domain BRM88_11410 34e661779eb42bdd59445afda426f4b4 106 Gene3D G3DSA:1.10.3340.10 3 106 6.0E-43 T 31-10-2018 IPR036810 SMc04008-like superfamily BRM88_19660 d0509875ec4a5d177a42cb9d1908aa93 716 SUPERFAMILY SSF50494 28 679 7.44E-25 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_19660 d0509875ec4a5d177a42cb9d1908aa93 716 Gene3D G3DSA:2.40.10.10 634 692 5.1E-6 T 31-10-2018 BRM88_19660 d0509875ec4a5d177a42cb9d1908aa93 716 Pfam PF10459 Peptidase S46 22 714 1.3E-257 T 31-10-2018 IPR019500 Peptidase S46 GO:0008239|GO:0070009 BRM88_09525 a59b89b849dbefbce08a69f3f87fa1c2 77 Gene3D G3DSA:3.40.30.10 2 76 5.0E-24 T 31-10-2018 BRM88_09525 a59b89b849dbefbce08a69f3f87fa1c2 77 SUPERFAMILY SSF52833 3 74 1.07E-14 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_09525 a59b89b849dbefbce08a69f3f87fa1c2 77 Pfam PF05768 Glutaredoxin-like domain (DUF836) 3 72 3.6E-13 T 31-10-2018 IPR008554 Glutaredoxin-like BRM88_09985 e3b0f5f2b7beb650a83e7f6b6f3d5476 854 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 542 828 9.4E-94 T 31-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal BRM88_09985 e3b0f5f2b7beb650a83e7f6b6f3d5476 854 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 22 303 7.3E-9 T 31-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD BRM88_09985 e3b0f5f2b7beb650a83e7f6b6f3d5476 854 SUPERFAMILY SSF55729 648 826 6.42E-17 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_22455 15dfb1a6c2fb1db7211b330c54fd7f91 106 Pfam PF13698 Domain of unknown function (DUF4156) 22 103 1.7E-10 T 31-10-2018 IPR025294 Protein of unknown function DUF4156 BRM88_21410 ca6e212037102295bcb433a07b96c01c 495 SUPERFAMILY SSF52091 401 485 3.53E-11 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_21410 ca6e212037102295bcb433a07b96c01c 495 Gene3D G3DSA:3.30.750.24 394 486 2.0E-23 T 31-10-2018 IPR036513 STAS domain superfamily BRM88_21410 ca6e212037102295bcb433a07b96c01c 495 Pfam PF01740 STAS domain 401 485 8.9E-6 T 31-10-2018 IPR002645 STAS domain BRM88_21410 ca6e212037102295bcb433a07b96c01c 495 Pfam PF00916 Sulfate permease family 18 359 5.9E-43 T 31-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BRM88_19425 8477adb5a2c09298f799c45b241d9273 265 Pfam PF05013 N-formylglutamate amidohydrolase 31 238 2.0E-46 T 31-10-2018 IPR007709 N-formylglutamate amidohydrolase BRM88_19425 8477adb5a2c09298f799c45b241d9273 265 Gene3D G3DSA:3.40.630.40 22 262 4.1E-87 T 31-10-2018 BRM88_19425 8477adb5a2c09298f799c45b241d9273 265 SUPERFAMILY SSF53187 14 262 3.77E-79 T 31-10-2018 BRM88_19425 8477adb5a2c09298f799c45b241d9273 265 PIRSF PIRSF029730 9 264 4.7E-103 T 31-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 231 4.8E-13 T 31-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 Gene3D G3DSA:3.30.360.10 127 327 2.1E-124 T 31-10-2018 BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 SUPERFAMILY SSF55347 130 284 1.34E-26 T 31-10-2018 BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 Gene3D G3DSA:3.40.50.720 6 315 2.1E-124 T 31-10-2018 BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 SUPERFAMILY SSF51735 3 157 6.43E-50 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_21015 0540af072c2c9c06cdccdb7dc671e67f 350 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 120 4.1E-26 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 SUPERFAMILY SSF51445 132 604 3.85E-116 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 Gene3D G3DSA:3.20.20.80 130 286 2.0E-9 T 31-10-2018 BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 Pfam PF02446 4-alpha-glucanotransferase 290 600 1.5E-70 T 31-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 Pfam PF02446 4-alpha-glucanotransferase 138 283 5.5E-13 T 31-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 289 615 3.7E-62 T 31-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BRM88_00355 1ae2d398298b63a6abc39b27ddc968bb 629 Gene3D G3DSA:3.20.20.80 287 619 5.4E-85 T 31-10-2018 BRM88_04050 b0abe860dd1318ac0209d5a75759cb9d 419 Pfam PF06738 Putative threonine/serine exporter 21 263 1.9E-53 T 31-10-2018 IPR010619 Putative threonine/serine exporter BRM88_04050 b0abe860dd1318ac0209d5a75759cb9d 419 Pfam PF12821 Threonine/Serine exporter, ThrE 288 409 3.6E-13 T 31-10-2018 IPR024528 Threonine/Serine exporter, ThrE BRM88_17925 d8872c2fea3dd662cf50dcf268739fe4 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.2E-21 T 31-10-2018 IPR010035 ThiS, thiamine-biosynthesis BRM88_17925 d8872c2fea3dd662cf50dcf268739fe4 66 Pfam PF02597 ThiS family 3 66 1.2E-14 T 31-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BRM88_17925 d8872c2fea3dd662cf50dcf268739fe4 66 SUPERFAMILY SSF54285 2 65 1.06E-17 T 31-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BRM88_17925 d8872c2fea3dd662cf50dcf268739fe4 66 Gene3D G3DSA:3.10.20.30 1 66 1.1E-21 T 31-10-2018 IPR012675 Beta-grasp domain superfamily BRM88_06555 c7767b6c3da116cf68bdeb79006fea31 130 Pfam PF03610 PTS system fructose IIA component 4 103 4.3E-12 T 31-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BRM88_06555 c7767b6c3da116cf68bdeb79006fea31 130 SUPERFAMILY SSF53062 4 124 2.88E-23 T 31-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BRM88_06555 c7767b6c3da116cf68bdeb79006fea31 130 Gene3D G3DSA:3.40.50.510 3 129 3.2E-23 T 31-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BRM88_14055 6ab8bcea51d7fd5ee4adcd6536ace2c5 122 SUPERFAMILY SSF51182 6 107 3.66E-26 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_14055 6ab8bcea51d7fd5ee4adcd6536ace2c5 122 Pfam PF07883 Cupin domain 35 102 5.1E-18 T 31-10-2018 IPR013096 Cupin 2, conserved barrel BRM88_14055 6ab8bcea51d7fd5ee4adcd6536ace2c5 122 Gene3D G3DSA:2.60.120.10 5 120 1.2E-19 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_05040 3f55e8f490344e2bb9a2a48d3bcc8b56 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05040 3f55e8f490344e2bb9a2a48d3bcc8b56 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05040 3f55e8f490344e2bb9a2a48d3bcc8b56 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.6E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 SUPERFAMILY SSF53474 2 267 7.42E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 2.1E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 2.1E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 2.1E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 2.1E-10 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 Gene3D G3DSA:3.40.50.1820 3 269 3.7E-51 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 Pfam PF00561 alpha/beta hydrolase fold 23 148 1.1E-18 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00412 Epoxide hydrolase signature 45 60 6.8E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00412 Epoxide hydrolase signature 104 117 6.8E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_15255 b2af0f55d71fe3202ad9582cec9d701b 271 PRINTS PR00412 Epoxide hydrolase signature 243 265 6.8E-8 T 31-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BRM88_24540 40fb6331c55de8700623db323591d739 133 Pfam PF05488 PAAR motif 5 74 2.6E-21 T 31-10-2018 IPR008727 PAAR motif BRM88_24540 40fb6331c55de8700623db323591d739 133 Gene3D G3DSA:2.60.200.60 3 82 1.2E-11 T 31-10-2018 BRM88_02750 d3275fc4ac8327c97502747a131d81af 332 Gene3D G3DSA:3.40.50.150 124 329 8.4E-14 T 31-10-2018 BRM88_02750 d3275fc4ac8327c97502747a131d81af 332 SUPERFAMILY SSF53335 127 314 2.52E-17 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_02750 d3275fc4ac8327c97502747a131d81af 332 Pfam PF12147 Putative methyltransferase 21 329 3.0E-152 T 31-10-2018 IPR022744 Methyltransferase domain, putative BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 Gene3D G3DSA:1.10.10.10 145 242 1.2E-12 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 SMART SM00448 14 126 1.1E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 SUPERFAMILY SSF52172 15 138 5.27E-25 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 SMART SM00862 161 240 7.9E-6 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 164 240 4.3E-7 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 Gene3D G3DSA:3.40.50.2300 15 144 8.4E-22 T 31-10-2018 BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 Pfam PF00072 Response regulator receiver domain 16 123 1.2E-14 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_03405 763a691b036ba0ba73e7bf10d88db02e 242 SUPERFAMILY SSF46894 156 240 1.16E-9 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 265 296 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 803 828 7.7E-10 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 429 460 2.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 701 732 1.8E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 299 330 1.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 565 596 5.1E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 735 766 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 463 494 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 531 562 4.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 361 392 4.2E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 769 800 5.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 633 664 5.7E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 667 698 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 497 528 1.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 333 355 9.7E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 231 262 3.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 395 426 3.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14945 58475ef61d9220ff4313762b36157bd3 863 Pfam PF03377 TAL effector repeat 599 630 1.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 SUPERFAMILY SSF56935 28 713 3.66E-131 T 31-10-2018 BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 Gene3D G3DSA:2.40.170.20 178 713 3.1E-122 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 168 6.0E-17 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 Gene3D G3DSA:2.170.130.10 49 177 1.1E-30 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 Pfam PF00593 TonB dependent receptor 259 710 1.8E-62 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_03160 d004af931137ad1d2bd822c080938c4a 713 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 68 713 6.6E-104 T 31-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BRM88_21340 38618901063c84fa7633025307dfb814 189 Pfam PF08212 Lipocalin-like domain 32 173 1.6E-40 T 31-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BRM88_21340 38618901063c84fa7633025307dfb814 189 Gene3D G3DSA:2.40.128.20 22 184 9.9E-28 T 31-10-2018 IPR012674 Calycin BRM88_21340 38618901063c84fa7633025307dfb814 189 SUPERFAMILY SSF50814 25 176 4.52E-28 T 31-10-2018 IPR012674 Calycin BRM88_21340 38618901063c84fa7633025307dfb814 189 ProSitePatterns PS00213 Lipocalin signature. 33 44 - T 31-10-2018 IPR022272 Lipocalin family conserved site BRM88_21340 38618901063c84fa7633025307dfb814 189 PIRSF PIRSF036893 1 185 1.7E-42 T 31-10-2018 IPR022271 Lipocalin, ApoD type BRM88_04010 a05a4f8f92884ee98deabd04b4d48176 695 Pfam PF14307 Glycosyltransferase WbsX 92 428 5.5E-128 T 31-10-2018 IPR032719 Glycosyltransferase WbsX BRM88_04010 a05a4f8f92884ee98deabd04b4d48176 695 Gene3D G3DSA:3.20.20.80 88 446 1.3E-18 T 31-10-2018 BRM88_04010 a05a4f8f92884ee98deabd04b4d48176 695 Pfam PF05045 Rhamnan synthesis protein F 443 666 1.7E-34 T 31-10-2018 IPR007739 Rhamnan synthesis F BRM88_08670 d50772e8ec5d3af83049fef59007dfee 192 Pfam PF01810 LysE type translocator 2 185 1.3E-39 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BRM88_22155 416b6511fa844905238620d8ca02e811 205 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_22155 416b6511fa844905238620d8ca02e811 205 SUPERFAMILY SSF55811 7 151 5.96E-30 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_22155 416b6511fa844905238620d8ca02e811 205 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 36.59 T 31-10-2018 IPR022927 RNA pyrophosphohydrolase RppH BRM88_22155 416b6511fa844905238620d8ca02e811 205 Pfam PF00293 NUDIX domain 7 129 2.1E-24 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_22155 416b6511fa844905238620d8ca02e811 205 Gene3D G3DSA:3.90.79.10 1 160 1.2E-42 T 31-10-2018 BRM88_11360 7e8bf2aba8c84965dd6a34469b402022 227 Pfam PF02224 Cytidylate kinase 9 219 4.5E-69 T 31-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BRM88_11360 7e8bf2aba8c84965dd6a34469b402022 227 Gene3D G3DSA:3.40.50.300 1 225 9.4E-75 T 31-10-2018 BRM88_11360 7e8bf2aba8c84965dd6a34469b402022 227 SUPERFAMILY SSF52540 7 221 2.22E-41 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_11360 7e8bf2aba8c84965dd6a34469b402022 227 Hamap MF_00238 Cytidylate kinase [cmk]. 6 225 33.158 T 31-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BRM88_11360 7e8bf2aba8c84965dd6a34469b402022 227 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 218 1.6E-69 T 31-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BRM88_16965 5ef4e2cd7f3cd4feeeb0ab1bdddd37c3 349 SUPERFAMILY SSF53756 50 292 2.28E-15 T 31-10-2018 BRM88_16965 5ef4e2cd7f3cd4feeeb0ab1bdddd37c3 349 Gene3D G3DSA:3.40.50.2000 48 154 4.6E-12 T 31-10-2018 BRM88_16965 5ef4e2cd7f3cd4feeeb0ab1bdddd37c3 349 Pfam PF13692 Glycosyl transferases group 1 171 274 9.8E-8 T 31-10-2018 BRM88_16965 5ef4e2cd7f3cd4feeeb0ab1bdddd37c3 349 Gene3D G3DSA:3.40.50.2000 155 273 4.6E-12 T 31-10-2018 BRM88_11215 3b07e554e33c1e045fd63cb107ae103c 56 Pfam PF04995 Heme exporter protein D (CcmD) 2 44 1.6E-9 T 31-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BRM88_04610 99e9034df006b561fd29d2866ec5efcd 160 Pfam PF08534 Redoxin 6 155 1.1E-25 T 31-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BRM88_04610 99e9034df006b561fd29d2866ec5efcd 160 SUPERFAMILY SSF52833 1 157 8.8E-27 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_04610 99e9034df006b561fd29d2866ec5efcd 160 Gene3D G3DSA:3.40.30.10 4 160 5.3E-47 T 31-10-2018 BRM88_04055 7b9c22c1e25035c1a825dbfb4e48af30 153 Gene3D G3DSA:4.10.430.10 75 125 2.1E-18 T 31-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 BRM88_04055 7b9c22c1e25035c1a825dbfb4e48af30 153 SUPERFAMILY SSF81273 81 123 2.2E-13 T 31-10-2018 BRM88_04055 7b9c22c1e25035c1a825dbfb4e48af30 153 SMART SM00528 77 122 8.8E-17 T 31-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BRM88_04055 7b9c22c1e25035c1a825dbfb4e48af30 153 Pfam PF00816 H-NS histone family 12 116 6.8E-23 T 31-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BRM88_22780 6ec3dcb446d32434b6e9b582b5467f77 357 Pfam PF00793 DAHP synthetase I family 40 338 3.0E-101 T 31-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_22780 6ec3dcb446d32434b6e9b582b5467f77 357 PIRSF PIRSF001361 2 352 1.2E-156 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BRM88_22780 6ec3dcb446d32434b6e9b582b5467f77 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 7.8E-161 T 31-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BRM88_22780 6ec3dcb446d32434b6e9b582b5467f77 357 SUPERFAMILY SSF51569 7 348 7.75E-135 T 31-10-2018 BRM88_22780 6ec3dcb446d32434b6e9b582b5467f77 357 Gene3D G3DSA:3.20.20.70 3 350 1.6E-159 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_03720 159f0292acab554df09f51889902133f 423 Gene3D G3DSA:2.40.30.170 70 349 1.2E-42 T 31-10-2018 BRM88_03720 159f0292acab554df09f51889902133f 423 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 95 328 2.7E-11 T 31-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BRM88_03720 159f0292acab554df09f51889902133f 423 Gene3D G3DSA:2.40.420.20 65 408 1.2E-42 T 31-10-2018 BRM88_03720 159f0292acab554df09f51889902133f 423 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 213 422 1.1E-30 T 31-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BRM88_03720 159f0292acab554df09f51889902133f 423 Gene3D G3DSA:1.10.287.470 114 241 1.2E-42 T 31-10-2018 BRM88_03720 159f0292acab554df09f51889902133f 423 Gene3D G3DSA:2.40.50.100 81 275 1.2E-42 T 31-10-2018 BRM88_17545 f9670a3654ca88b082e1b61a4f8c48f7 320 SMART SM01126 137 285 6.9E-46 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17545 f9670a3654ca88b082e1b61a4f8c48f7 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 4.2E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_17545 f9670a3654ca88b082e1b61a4f8c48f7 320 Pfam PF12762 ISXO2-like transposase domain 138 285 1.5E-30 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_07775 c43cc13e92efbf8767a41e2158cb10fa 168 Gene3D G3DSA:3.30.1490.190 110 168 3.2E-15 T 31-10-2018 BRM88_07775 c43cc13e92efbf8767a41e2158cb10fa 168 Gene3D G3DSA:1.10.10.10 19 107 5.7E-30 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_07775 c43cc13e92efbf8767a41e2158cb10fa 168 Pfam PF01475 Ferric uptake regulator family 35 157 3.4E-10 T 31-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BRM88_07775 c43cc13e92efbf8767a41e2158cb10fa 168 SUPERFAMILY SSF46785 30 162 7.17E-27 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_01610 0324d4c5352c9fe2223b5e9cd9a3caa4 460 Pfam PF13347 MFS/sugar transport protein 21 439 1.8E-95 T 31-10-2018 BRM88_01610 0324d4c5352c9fe2223b5e9cd9a3caa4 460 SUPERFAMILY SSF103473 15 434 3.27E-35 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_01610 0324d4c5352c9fe2223b5e9cd9a3caa4 460 Gene3D G3DSA:1.20.1250.20 26 433 1.1E-24 T 31-10-2018 BRM88_01610 0324d4c5352c9fe2223b5e9cd9a3caa4 460 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 19 452 6.4E-116 T 31-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BRM88_10620 7782a49fad7311202f84bc6d4f07527a 197 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 5.5E-29 T 31-10-2018 IPR001498 Impact, N-terminal BRM88_10620 7782a49fad7311202f84bc6d4f07527a 197 SUPERFAMILY SSF54980 129 193 6.33E-10 T 31-10-2018 IPR035647 EF-G domain III/V-like BRM88_10620 7782a49fad7311202f84bc6d4f07527a 197 Pfam PF09186 Domain of unknown function (DUF1949) 132 188 9.3E-9 T 31-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal BRM88_10620 7782a49fad7311202f84bc6d4f07527a 197 SUPERFAMILY SSF54211 6 120 6.45E-38 T 31-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BRM88_10620 7782a49fad7311202f84bc6d4f07527a 197 Gene3D G3DSA:3.30.230.30 1 125 1.7E-45 T 31-10-2018 IPR036956 Impact, N-terminal domain superfamily BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 PIRSF PIRSF038925 9 369 3.8E-115 T 31-10-2018 IPR026287 Adenosine monophosphate-protein transferase BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 Pfam PF13784 Fic/DOC family N-terminal 36 117 5.4E-25 T 31-10-2018 IPR025758 Fic/DOC N-terminal BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 Pfam PF02661 Fic/DOC family 148 222 7.5E-16 T 31-10-2018 IPR003812 Fido domain BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 Gene3D G3DSA:1.10.3290.10 59 287 7.8E-36 T 31-10-2018 IPR036597 Fido-like domain superfamily BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 Gene3D G3DSA:1.10.10.10 301 360 2.6E-5 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 SUPERFAMILY SSF46785 306 356 1.05E-5 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_22465 575a554c17a4b259c1ac7c1c41cfeffc 387 SUPERFAMILY SSF140931 162 285 2.22E-30 T 31-10-2018 IPR036597 Fido-like domain superfamily BRM88_04215 837982390f323043585deaa3d84a42de 265 Pfam PF10411 Disulfide bond isomerase protein N-terminus 49 101 2.8E-16 T 31-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BRM88_04215 837982390f323043585deaa3d84a42de 265 SUPERFAMILY SSF54423 55 102 9.94E-11 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 BRM88_04215 837982390f323043585deaa3d84a42de 265 Gene3D G3DSA:3.10.450.70 42 99 9.6E-11 T 31-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 BRM88_04215 837982390f323043585deaa3d84a42de 265 Pfam PF13098 Thioredoxin-like domain 132 253 2.9E-25 T 31-10-2018 IPR012336 Thioredoxin-like fold BRM88_04215 837982390f323043585deaa3d84a42de 265 SUPERFAMILY SSF52833 114 255 6.92E-37 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_04215 837982390f323043585deaa3d84a42de 265 Gene3D G3DSA:3.40.30.10 100 257 4.9E-47 T 31-10-2018 BRM88_00500 cbd19789f9020ff37f3a6934acf74b21 213 TIGRFAM TIGR02557 HpaP: type III secretion protein HpaP 13 213 8.4E-76 T 31-10-2018 IPR013390 Type III secretion protein HpaP BRM88_00500 cbd19789f9020ff37f3a6934acf74b21 213 Pfam PF09483 Type III secretion protein (HpaP) 24 212 2.1E-38 T 31-10-2018 IPR013390 Type III secretion protein HpaP BRM88_23115 956e5d697528331920c23ab2f210848f 455 ProSitePatterns PS00216 Sugar transport proteins signature 1. 113 129 - T 31-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BRM88_23115 956e5d697528331920c23ab2f210848f 455 SUPERFAMILY SSF103473 56 436 4.97E-55 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_23115 956e5d697528331920c23ab2f210848f 455 Pfam PF07690 Major Facilitator Superfamily 63 279 2.8E-21 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_23115 956e5d697528331920c23ab2f210848f 455 Gene3D G3DSA:1.20.1250.20 55 440 1.4E-44 T 31-10-2018 BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 Gene3D G3DSA:2.60.120.10 142 241 1.1E-66 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 Gene3D G3DSA:2.60.120.10 14 267 1.1E-66 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 SUPERFAMILY SSF51182 3 284 2.05E-78 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 PIRSF PIRSF006232 1 280 1.1E-87 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 Pfam PF02678 Pirin 16 120 1.3E-33 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BRM88_07580 a5d228a6831422237672b0f338ec54b9 296 Pfam PF05726 Pirin C-terminal cupin domain 174 272 4.1E-27 T 31-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 BRM88_15075 129b99fc9398f3ac8c95cebcb7ca1169 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 103 219 2.0E-24 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BRM88_02980 e6127af324232d1aeb91bdc9ed25b9ca 380 Pfam PF02481 DNA recombination-mediator protein A 73 280 2.9E-74 T 31-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BRM88_02980 e6127af324232d1aeb91bdc9ed25b9ca 380 Gene3D G3DSA:1.10.10.10 304 376 3.1E-7 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_02980 e6127af324232d1aeb91bdc9ed25b9ca 380 Gene3D G3DSA:3.40.50.450 6 293 1.9E-94 T 31-10-2018 BRM88_02980 e6127af324232d1aeb91bdc9ed25b9ca 380 SUPERFAMILY SSF102405 83 290 5.49E-39 T 31-10-2018 BRM88_02980 e6127af324232d1aeb91bdc9ed25b9ca 380 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 71 288 5.8E-74 T 31-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BRM88_13455 c9a96f6205d5e778e93963fc6c597f57 152 Pfam PF00293 NUDIX domain 12 120 1.2E-14 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_13455 c9a96f6205d5e778e93963fc6c597f57 152 SUPERFAMILY SSF55811 6 145 4.47E-29 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_13455 c9a96f6205d5e778e93963fc6c597f57 152 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 31-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BRM88_13455 c9a96f6205d5e778e93963fc6c597f57 152 Gene3D G3DSA:3.90.79.10 4 152 7.2E-38 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 326 347 - T 31-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 Pfam PF13616 PPIC-type PPIASE domain 280 388 4.6E-30 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 Gene3D G3DSA:1.10.4030.30 67 215 6.4E-8 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 Gene3D G3DSA:3.10.50.40 287 389 4.8E-35 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 SUPERFAMILY SSF109998 68 257 1.1E-19 T 31-10-2018 IPR027304 Trigger factor/SurA domain superfamily BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 Pfam PF13623 SurA N-terminal domain 2 159 6.6E-26 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 SUPERFAMILY SSF54534 283 389 9.81E-32 T 31-10-2018 BRM88_05215 2704a95615ae6766c9f64dd0f3a2eea8 656 Gene3D G3DSA:1.10.4030.30 266 402 4.8E-35 T 31-10-2018 BRM88_05095 525a89df8c128ab2bf68b7bcbddd70bf 243 Gene3D G3DSA:3.20.20.190 32 242 7.8E-52 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_05095 525a89df8c128ab2bf68b7bcbddd70bf 243 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 47 162 4.2E-20 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BRM88_05095 525a89df8c128ab2bf68b7bcbddd70bf 243 SUPERFAMILY SSF51695 42 220 3.92E-37 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_10285 e6286de3d882935decdb3c2868785296 275 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 231 257 - T 31-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 BRM88_10285 e6286de3d882935decdb3c2868785296 275 Pfam PF01148 Cytidylyltransferase family 3 269 2.0E-68 T 31-10-2018 BRM88_20220 be35e92ef88e47b3f0d4009d75e66c52 918 Pfam PF00593 TonB dependent receptor 412 890 1.0E-34 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_20220 be35e92ef88e47b3f0d4009d75e66c52 918 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 41 918 3.7E-204 T 31-10-2018 IPR010104 Bacterial TonB-dependent receptor BRM88_20220 be35e92ef88e47b3f0d4009d75e66c52 918 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 174 8.7E-19 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_20220 be35e92ef88e47b3f0d4009d75e66c52 918 SUPERFAMILY SSF56935 35 916 1.76E-76 T 31-10-2018 BRM88_20220 be35e92ef88e47b3f0d4009d75e66c52 918 Gene3D G3DSA:2.170.130.10 39 179 7.7E-14 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_16410 a1a2766b8e435d3eb42e27a3ee583998 140 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 45 121 1.3E-19 T 31-10-2018 IPR006260 TonB/TolA, C-terminal BRM88_16410 a1a2766b8e435d3eb42e27a3ee583998 140 Gene3D G3DSA:3.30.1150.10 23 120 5.3E-22 T 31-10-2018 BRM88_16410 a1a2766b8e435d3eb42e27a3ee583998 140 SUPERFAMILY SSF74653 39 119 4.19E-20 T 31-10-2018 BRM88_16410 a1a2766b8e435d3eb42e27a3ee583998 140 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 43 120 2.9E-20 T 31-10-2018 IPR037682 TonB, C-terminal GO:0055085 BRM88_19870 35a8351f2f23394fba4804d8813bad0f 186 SUPERFAMILY SSF53927 5 181 8.86E-33 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_19870 35a8351f2f23394fba4804d8813bad0f 186 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 31 130 2.5E-12 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BRM88_19870 35a8351f2f23394fba4804d8813bad0f 186 Gene3D G3DSA:3.40.140.10 10 179 1.0E-35 T 31-10-2018 BRM88_09845 ec29d2df34ab81381ec7218af889a619 84 Gene3D G3DSA:1.10.10.1130 1 79 5.7E-30 T 31-10-2018 BRM88_09845 ec29d2df34ab81381ec7218af889a619 84 Pfam PF10982 Protein of unknown function (DUF2789) 1 75 2.4E-30 T 31-10-2018 IPR021250 Protein of unknown function DUF2789 BRM88_18680 8e19584b6ecc388fd7c65dfb2f081b62 274 Pfam PF13503 Domain of unknown function (DUF4123) 53 157 3.9E-12 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_14665 0460e1343f641d443716d302e6a2af94 120 Gene3D G3DSA:1.10.3720.10 1 116 2.2E-30 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_14665 0460e1343f641d443716d302e6a2af94 120 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 14 114 1.9E-18 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_14665 0460e1343f641d443716d302e6a2af94 120 SUPERFAMILY SSF161098 1 111 2.75E-31 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 SUPERFAMILY SSF46894 135 224 1.36E-18 T 31-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 Gene3D G3DSA:1.10.10.10 136 227 1.6E-23 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 SUPERFAMILY SSF52172 9 127 1.15E-37 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 SMART SM00448 8 118 7.2E-38 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 222 8.4E-17 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 Pfam PF00072 Response regulator receiver domain 10 118 6.5E-26 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 SMART SM00862 150 223 1.9E-14 T 31-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BRM88_23070 e67ea4e5cab05134d3dbfe8a4cf13ed6 235 Gene3D G3DSA:3.40.50.2300 4 129 3.4E-34 T 31-10-2018 BRM88_09390 ee02f964e552309651a64fb6418ede26 192 Pfam PF01957 NfeD-like C-terminal, partner-binding 7 136 7.2E-29 T 31-10-2018 IPR002810 NfeD-like, C-terminal domain BRM88_18855 d26185f19e88453706681ed519083aa3 246 Gene3D G3DSA:2.160.20.70 140 246 5.4E-29 T 31-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 BRM88_18855 d26185f19e88453706681ed519083aa3 246 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 8 111 4.2E-19 T 31-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 BRM88_18855 d26185f19e88453706681ed519083aa3 246 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 144 242 4.4E-30 T 31-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 BRM88_18855 d26185f19e88453706681ed519083aa3 246 Gene3D G3DSA:3.30.750.120 8 121 5.0E-7 T 31-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily BRM88_18855 d26185f19e88453706681ed519083aa3 246 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 12 245 5.5E-69 T 31-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BRM88_18855 d26185f19e88453706681ed519083aa3 246 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 11 246 26.185 T 31-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BRM88_18855 d26185f19e88453706681ed519083aa3 246 SUPERFAMILY SSF63848 142 245 1.83E-29 T 31-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 BRM88_08200 d3604b5a6ba582bfbfc07a1484580bfb 508 SUPERFAMILY SSF53335 241 430 4.0E-35 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_08200 d3604b5a6ba582bfbfc07a1484580bfb 508 Pfam PF01564 Spermine/spermidine synthase domain 282 411 1.6E-11 T 31-10-2018 BRM88_08200 d3604b5a6ba582bfbfc07a1484580bfb 508 Gene3D G3DSA:3.40.50.150 278 471 5.6E-38 T 31-10-2018 BRM88_06195 a9b265eeddc532d602d877b1076a0733 119 Pfam PF12889 Protein of unknown function (DUF3829) 4 102 5.9E-14 T 31-10-2018 IPR024291 Protein of unknown function DUF3829 BRM88_10255 50b064f6ecaccf3e047c33932146fc1e 153 Gene3D G3DSA:3.10.129.10 4 152 2.3E-56 T 31-10-2018 BRM88_10255 50b064f6ecaccf3e047c33932146fc1e 153 SUPERFAMILY SSF54637 12 150 9.61E-45 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_10255 50b064f6ecaccf3e047c33932146fc1e 153 Pfam PF07977 FabA-like domain 19 144 1.2E-39 T 31-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_10255 50b064f6ecaccf3e047c33932146fc1e 153 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 10 152 34.071 T 31-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_10255 50b064f6ecaccf3e047c33932146fc1e 153 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 10 149 2.8E-60 T 31-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BRM88_23470 74c22e8c4a948495f4d0af0abce6840a 305 Pfam PF01171 PP-loop family 53 217 2.6E-16 T 31-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 BRM88_23470 74c22e8c4a948495f4d0af0abce6840a 305 Gene3D G3DSA:3.40.50.620 20 271 2.0E-45 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_23470 74c22e8c4a948495f4d0af0abce6840a 305 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 22 283 53.732 T 31-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 BRM88_23470 74c22e8c4a948495f4d0af0abce6840a 305 PIRSF PIRSF004976 12 282 1.4E-68 T 31-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 BRM88_23470 74c22e8c4a948495f4d0af0abce6840a 305 SUPERFAMILY SSF52402 40 268 1.83E-52 T 31-10-2018 BRM88_06935 48e4f0bcc36afe4bed776b8d8787c05f 244 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 1 239 2.2E-35 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BRM88_06935 48e4f0bcc36afe4bed776b8d8787c05f 244 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 244 48.254 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BRM88_06935 48e4f0bcc36afe4bed776b8d8787c05f 244 Pfam PF02654 Cobalamin-5-phosphate synthase 8 237 1.6E-49 T 31-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BRM88_00580 a123eca9d037f1cd57bfa3ed2fb27bc4 327 Pfam PF05598 Transposase domain (DUF772) 50 124 5.0E-20 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00580 a123eca9d037f1cd57bfa3ed2fb27bc4 327 Pfam PF01609 Transposase DDE domain 136 311 2.4E-31 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_08085 ffe132f3da786f52286ce9b6143f4766 196 SUPERFAMILY SSF159941 16 188 1.18E-43 T 31-10-2018 IPR024047 MM3350-like superfamily BRM88_08085 ffe132f3da786f52286ce9b6143f4766 196 Gene3D G3DSA:3.10.290.30 12 189 1.9E-42 T 31-10-2018 IPR024047 MM3350-like superfamily BRM88_08085 ffe132f3da786f52286ce9b6143f4766 196 Pfam PF07929 Plasmid pRiA4b ORF-3-like protein 17 185 2.5E-41 T 31-10-2018 IPR012912 Plasmid pRiA4b, Orf3 BRM88_09705 022758d06cbcce95b554e687d2e20251 411 Pfam PF01610 Transposase 155 389 6.8E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_09705 022758d06cbcce95b554e687d2e20251 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_00865 0a6fe11047f070e1f193b3f57720d911 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 2.6E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00865 0a6fe11047f070e1f193b3f57720d911 321 SMART SM01126 137 282 6.1E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_00865 0a6fe11047f070e1f193b3f57720d911 321 Pfam PF12762 ISXO2-like transposase domain 137 282 4.6E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_12255 3221770b3e698a59deec063599df0942 219 Pfam PF01081 KDPG and KHG aldolase 11 203 1.2E-63 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BRM88_12255 3221770b3e698a59deec063599df0942 219 Gene3D G3DSA:3.20.20.70 1 215 1.4E-70 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_12255 3221770b3e698a59deec063599df0942 219 SUPERFAMILY SSF51569 7 213 4.4E-62 T 31-10-2018 BRM88_12255 3221770b3e698a59deec063599df0942 219 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 11 211 1.6E-78 T 31-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BRM88_12255 3221770b3e698a59deec063599df0942 219 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 42 51 - T 31-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 SUPERFAMILY SSF53850 93 284 4.16E-26 T 31-10-2018 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 Pfam PF03466 LysR substrate binding domain 92 283 1.8E-21 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 SUPERFAMILY SSF46785 5 115 3.74E-21 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.8E-6 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 Gene3D G3DSA:1.10.10.10 5 93 2.7E-18 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 Gene3D G3DSA:3.40.190.290 94 288 1.6E-29 T 31-10-2018 BRM88_01960 e59cd172d988f60c77f40e1f51df0671 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.6E-19 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_20270 56ef069e464921a1a5176fdbc25af47d 310 Pfam PF00685 Sulfotransferase domain 27 280 5.1E-41 T 31-10-2018 IPR000863 Sulfotransferase domain GO:0008146 BRM88_20270 56ef069e464921a1a5176fdbc25af47d 310 Gene3D G3DSA:3.40.50.300 6 287 9.2E-57 T 31-10-2018 BRM88_20270 56ef069e464921a1a5176fdbc25af47d 310 SUPERFAMILY SSF52540 19 280 2.09E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06530 ee17a94a8b2d58482b21bf72d865420e 264 SUPERFAMILY SSF53474 40 259 1.62E-34 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_06530 ee17a94a8b2d58482b21bf72d865420e 264 Gene3D G3DSA:3.40.50.1820 23 262 1.1E-56 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_06530 ee17a94a8b2d58482b21bf72d865420e 264 Pfam PF00326 Prolyl oligopeptidase family 118 245 7.6E-10 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_10730 ac3c225efec8df8c4364da7a9d9a7dbe 291 Gene3D G3DSA:3.40.50.300 2 233 1.4E-43 T 31-10-2018 BRM88_10730 ac3c225efec8df8c4364da7a9d9a7dbe 291 SMART SM00382 34 212 3.0E-13 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_10730 ac3c225efec8df8c4364da7a9d9a7dbe 291 SUPERFAMILY SSF52540 9 225 6.52E-43 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_10730 ac3c225efec8df8c4364da7a9d9a7dbe 291 Pfam PF00005 ABC transporter 25 162 1.1E-19 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_12870 bc114ce8e3aeedf07567da9730551981 228 Pfam PF09365 Conserved hypothetical protein (DUF2461) 10 219 6.6E-60 T 31-10-2018 IPR012808 Conserved hypothetical protein CHP02453 BRM88_12870 bc114ce8e3aeedf07567da9730551981 228 PIRSF PIRSF028451 1 228 3.7E-98 T 31-10-2018 IPR015996 Uncharacterised conserved protein UCP028451 BRM88_12870 bc114ce8e3aeedf07567da9730551981 228 TIGRFAM TIGR02453 TIGR02453: TIGR02453 family protein 6 225 9.7E-83 T 31-10-2018 IPR012808 Conserved hypothetical protein CHP02453 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 ProSitePatterns PS01182 Glycosyl hydrolases family 35 putative active site. 175 187 - T 31-10-2018 IPR019801 Glycoside hydrolase, family 35, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 Gene3D G3DSA:3.20.20.80 22 299 3.5E-101 T 31-10-2018 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 SUPERFAMILY SSF49785 469 594 3.4E-22 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 Gene3D G3DSA:2.60.120.260 379 509 1.2E-93 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 Pfam PF01301 Glycosyl hydrolases family 35 38 355 5.0E-120 T 31-10-2018 IPR031330 Glycoside hydrolase 35, catalytic domain KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 SUPERFAMILY SSF51445 33 357 4.16E-94 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PIRSF PIRSF006336 3 607 2.1E-178 T 31-10-2018 IPR026283 Beta-galactosidase 1-like GO:0004565 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 63 81 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 173 188 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 551 567 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 118 137 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 259 274 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 42 59 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 PRINTS PR00742 Glycosyl hydrolase family 35 signature 325 341 7.4E-47 T 31-10-2018 IPR001944 Glycoside hydrolase, family 35 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BRM88_09230 42160ce7f687e31e27af0a789fecd26c 613 Gene3D G3DSA:2.60.120.260 300 592 1.2E-93 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_14030 3bd1b54cfb08a8171ae943b73454522d 421 Pfam PF07690 Major Facilitator Superfamily 25 357 4.0E-16 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_14030 3bd1b54cfb08a8171ae943b73454522d 421 SUPERFAMILY SSF103473 15 398 1.31E-42 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_14030 3bd1b54cfb08a8171ae943b73454522d 421 Gene3D G3DSA:1.20.1250.20 5 401 9.7E-30 T 31-10-2018 BRM88_22065 0bb9ca88ee03392387905841ab6bde26 526 SUPERFAMILY SSF52833 30 160 7.36E-22 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_22065 0bb9ca88ee03392387905841ab6bde26 526 Pfam PF13899 Thioredoxin-like 54 132 1.5E-14 T 31-10-2018 BRM88_22065 0bb9ca88ee03392387905841ab6bde26 526 Gene3D G3DSA:3.40.30.10 45 180 1.4E-23 T 31-10-2018 BRM88_05045 ee42f539961cb7654620580b2abdb4ee 525 SUPERFAMILY SSF51126 66 384 2.48E-18 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_05045 ee42f539961cb7654620580b2abdb4ee 525 SUPERFAMILY SSF51126 337 524 9.87E-7 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_21440 28a68d6f5af88e9f30a67f8d23711dc6 309 Pfam PF01590 GAF domain 27 151 6.1E-7 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_21440 28a68d6f5af88e9f30a67f8d23711dc6 309 SUPERFAMILY SSF55781 26 158 8.63E-20 T 31-10-2018 BRM88_21440 28a68d6f5af88e9f30a67f8d23711dc6 309 Gene3D G3DSA:3.30.450.40 23 171 2.0E-12 T 31-10-2018 IPR029016 GAF-like domain superfamily BRM88_21440 28a68d6f5af88e9f30a67f8d23711dc6 309 SMART SM00065 25 168 0.0044 T 31-10-2018 IPR003018 GAF domain GO:0005515 BRM88_21000 03edbb22724fa5341778baf2207549ca 146 SUPERFAMILY SSF52172 6 141 6.12E-29 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_21000 03edbb22724fa5341778baf2207549ca 146 Gene3D G3DSA:3.40.50.2300 4 145 1.3E-32 T 31-10-2018 BRM88_21000 03edbb22724fa5341778baf2207549ca 146 SMART SM00448 5 129 7.0E-22 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_21000 03edbb22724fa5341778baf2207549ca 146 Pfam PF00072 Response regulator receiver domain 7 129 3.6E-17 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_16040 862b5dff2d3c798ac85a22f332a81102 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 5 51 1.7E-18 T 31-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BRM88_16040 862b5dff2d3c798ac85a22f332a81102 68 Pfam PF04995 Heme exporter protein D (CcmD) 8 50 4.1E-14 T 31-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BRM88_21825 a0aa0edb74736c3a36c88257a9c2759b 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_21825 a0aa0edb74736c3a36c88257a9c2759b 439 SUPERFAMILY SSF53098 18 403 4.32E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_22300 1c9912f2e190614ed65c74f7c8754bac 323 Pfam PF00665 Integrase core domain 182 271 2.8E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_22300 1c9912f2e190614ed65c74f7c8754bac 323 Pfam PF13936 Helix-turn-helix domain 19 50 4.1E-12 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_22300 1c9912f2e190614ed65c74f7c8754bac 323 SUPERFAMILY SSF53098 170 312 4.7E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_16755 11be284997fe307c87ce26f57176c9c4 610 Pfam PF05960 Bacterial protein of unknown function (DUF885) 67 595 4.5E-159 T 31-10-2018 IPR010281 Protein of unknown function DUF885 BRM88_00760 20b1bf6a56018c52ed483362d6040e40 83 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 29 79 7.8E-21 T 31-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BRM88_01720 51a96e344460e36579ddf2f383dfa371 557 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 1 554 49.615 T 31-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 BRM88_01720 51a96e344460e36579ddf2f383dfa371 557 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 5 449 4.1E-182 T 31-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 BRM88_01720 51a96e344460e36579ddf2f383dfa371 557 Pfam PF03109 ABC1 family 110 232 1.3E-29 T 31-10-2018 IPR004147 UbiB domain BRM88_01720 51a96e344460e36579ddf2f383dfa371 557 SUPERFAMILY SSF56112 92 439 1.01E-32 T 31-10-2018 IPR011009 Protein kinase-like domain superfamily BRM88_08720 56a9e43271e1889117c60af82d8c7bc9 394 SUPERFAMILY SSF56349 75 384 1.62E-28 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_08720 56a9e43271e1889117c60af82d8c7bc9 394 Gene3D G3DSA:1.10.443.10 206 385 1.5E-13 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_08720 56a9e43271e1889117c60af82d8c7bc9 394 Gene3D G3DSA:1.10.150.130 74 197 2.8E-9 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_04660 83c1790644c2d8359cbb652e2455dd7a 458 Pfam PF01609 Transposase DDE domain 283 416 2.9E-8 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_04660 83c1790644c2d8359cbb652e2455dd7a 458 Pfam PF05598 Transposase domain (DUF772) 59 132 5.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_09930 87c63fb3d2a81c255c60f19a78946767 403 Gene3D G3DSA:1.20.1250.20 13 207 5.9E-32 T 31-10-2018 BRM88_09930 87c63fb3d2a81c255c60f19a78946767 403 Pfam PF07690 Major Facilitator Superfamily 23 339 1.4E-37 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_09930 87c63fb3d2a81c255c60f19a78946767 403 SUPERFAMILY SSF103473 8 395 7.85E-61 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_09930 87c63fb3d2a81c255c60f19a78946767 403 Gene3D G3DSA:1.20.1250.20 209 399 1.0E-17 T 31-10-2018 BRM88_14770 d4ecd8a884d2f138018cf64731998027 1045 Pfam PF13086 AAA domain 719 778 6.8E-9 T 31-10-2018 BRM88_14770 d4ecd8a884d2f138018cf64731998027 1045 Gene3D G3DSA:3.40.50.300 698 811 3.0E-12 T 31-10-2018 BRM88_14770 d4ecd8a884d2f138018cf64731998027 1045 SUPERFAMILY SSF52540 304 1023 1.37E-33 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14770 d4ecd8a884d2f138018cf64731998027 1045 Gene3D G3DSA:3.40.50.300 838 1043 9.3E-24 T 31-10-2018 BRM88_14770 d4ecd8a884d2f138018cf64731998027 1045 Pfam PF13087 AAA domain 854 1020 3.7E-12 T 31-10-2018 BRM88_22370 ae8dcb1c4ac04044ab2dfb2098c58e43 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.6E-29 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22370 ae8dcb1c4ac04044ab2dfb2098c58e43 321 SMART SM01126 137 282 4.1E-47 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22370 ae8dcb1c4ac04044ab2dfb2098c58e43 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_24615 f7dc2dd9c6fd30695fe4abcb9c1cdbb0 366 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 36 354 1.6E-47 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BRM88_24615 f7dc2dd9c6fd30695fe4abcb9c1cdbb0 366 SUPERFAMILY SSF51695 31 360 3.4E-71 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_24615 f7dc2dd9c6fd30695fe4abcb9c1cdbb0 366 Gene3D G3DSA:3.20.20.190 30 361 3.7E-106 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_15615 eba7c018dd109ae9d92eae583e84f881 233 Gene3D G3DSA:2.60.120.10 133 233 2.0E-31 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_15615 eba7c018dd109ae9d92eae583e84f881 233 Pfam PF02678 Pirin 7 119 1.3E-32 T 31-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BRM88_15615 eba7c018dd109ae9d92eae583e84f881 233 Gene3D G3DSA:2.60.120.10 12 132 3.7E-58 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_15615 eba7c018dd109ae9d92eae583e84f881 233 SUPERFAMILY SSF51182 1 232 8.69E-73 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_15615 eba7c018dd109ae9d92eae583e84f881 233 PIRSF PIRSF006232 1 230 1.8E-52 T 31-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BRM88_17790 cfca26e12fb73b34b5f2b4272c422836 337 SUPERFAMILY SSF50891 83 298 6.57E-29 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily BRM88_17790 cfca26e12fb73b34b5f2b4272c422836 337 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 84 252 8.0E-27 T 31-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BRM88_17790 cfca26e12fb73b34b5f2b4272c422836 337 Gene3D G3DSA:2.40.100.10 21 255 9.3E-33 T 31-10-2018 IPR029000 Cyclophilin-like domain superfamily BRM88_08815 66c86c6c4fc6ceb1ec6731ad9692aac5 100 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 87 9.6E-15 T 31-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative BRM88_06835 3f1295d7b9f635eb701de3a692d78bd1 91 Gene3D G3DSA:3.40.30.10 1 90 7.1E-21 T 31-10-2018 BRM88_06835 3f1295d7b9f635eb701de3a692d78bd1 91 SUPERFAMILY SSF52833 3 84 3.9E-16 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 SUPERFAMILY SSF49785 25 179 1.36E-19 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 Pfam PF06202 Amylo-alpha-1,6-glucosidase 610 710 4.9E-5 T 31-10-2018 IPR032790 Glycogen debranching enzyme, C-terminal KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-6798695|Reactome: R-HSA-70221 BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 Pfam PF00754 F5/8 type C domain 199 300 8.9E-15 T 31-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 SUPERFAMILY SSF48208 558 986 1.4E-45 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 SUPERFAMILY SSF49785 186 296 9.92E-15 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 Gene3D G3DSA:1.50.10.10 621 933 1.4E-21 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 Gene3D G3DSA:2.60.120.430 19 178 4.9E-5 T 31-10-2018 BRM88_11315 4f970e314ea0c58f5882272c5d307cca 1054 Gene3D G3DSA:2.60.120.260 189 306 1.9E-16 T 31-10-2018 IPR008979 Galactose-binding-like domain superfamily BRM88_18860 1efa4a12e3e6780101f277c56002f6b2 269 PIRSF PIRSF003092 1 269 1.9E-89 T 31-10-2018 IPR025501 ATP binding protein MinD BRM88_18860 1efa4a12e3e6780101f277c56002f6b2 269 SUPERFAMILY SSF52540 4 267 4.17E-54 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_18860 1efa4a12e3e6780101f277c56002f6b2 269 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 226 4.2E-23 T 31-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BRM88_18860 1efa4a12e3e6780101f277c56002f6b2 269 Gene3D G3DSA:3.40.50.300 1 259 6.6E-69 T 31-10-2018 BRM88_18860 1efa4a12e3e6780101f277c56002f6b2 269 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 266 2.7E-109 T 31-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 BRM88_05770 8a1642ddb15beb02db83720dce8a95f5 73 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 9 73 2.2E-30 T 31-10-2018 IPR012662 Conserved hypothetical protein CHP02449 BRM88_13970 8cfc2cd958ae0ee1843b7e529b100d7a 432 SUPERFAMILY SSF53098 8 396 1.14E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_13970 8cfc2cd958ae0ee1843b7e529b100d7a 432 Pfam PF13546 DDE superfamily endonuclease 11 284 8.5E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_01555 ab8972cfa2eaccd3cf66ba668bddc689 404 SUPERFAMILY SSF53098 14 367 1.14E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_01555 ab8972cfa2eaccd3cf66ba668bddc689 404 Pfam PF01609 Transposase DDE domain 89 329 1.7E-25 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_12215 a8a11f3316ff1e87afe8033f6e747e1d 88 Pfam PF07896 Protein of unknown function (DUF1674) 50 88 1.3E-16 T 31-10-2018 IPR012875 Protein of unknown function DUF1674 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 Gene3D G3DSA:3.20.20.70 4 222 1.1E-84 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 9.4E-90 T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 SUPERFAMILY SSF51366 4 217 1.06E-73 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 1.1E-95 T 31-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BRM88_21615 cd7e56c16fbb2f9d43b4ea57cc7e0682 223 PIRSF PIRSF001461 1 223 7.7E-103 T 31-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BRM88_08820 ee27a8aac4c120a1a9be1ae93780fb7a 169 Pfam PF04985 Phage tail tube protein FII 4 168 2.1E-67 T 31-10-2018 IPR006498 Tail tube protein BRM88_08820 ee27a8aac4c120a1a9be1ae93780fb7a 169 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 168 2.9E-61 T 31-10-2018 IPR006498 Tail tube protein BRM88_09835 41813430ec79896fb9c34a0c640dc3aa 175 Gene3D G3DSA:3.30.2010.10 81 170 1.5E-6 T 31-10-2018 BRM88_09835 41813430ec79896fb9c34a0c640dc3aa 175 Pfam PF01863 Protein of unknown function DUF45 105 163 2.2E-12 T 31-10-2018 IPR002725 Protein of unknown function DUF45 BRM88_19600 b67dbda599a8768c6aef5a7d3fa0ca4d 180 Pfam PF01569 PAP2 superfamily 68 173 4.1E-20 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_19600 b67dbda599a8768c6aef5a7d3fa0ca4d 180 SUPERFAMILY SSF48317 12 173 2.88E-34 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BRM88_19600 b67dbda599a8768c6aef5a7d3fa0ca4d 180 SMART SM00014 63 172 1.1E-14 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_19600 b67dbda599a8768c6aef5a7d3fa0ca4d 180 Gene3D G3DSA:1.20.144.10 93 179 1.1E-16 T 31-10-2018 BRM88_09950 e0f414e234e7a7908bbba7c07772c662 151 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 7 144 3.0E-55 T 31-10-2018 IPR011971 Conserved hypothetical protein CHP02284 BRM88_09950 e0f414e234e7a7908bbba7c07772c662 151 Pfam PF09537 Domain of unknown function (DUF2383) 7 114 3.7E-30 T 31-10-2018 IPR019052 Domain of unknown function DUF2383 BRM88_09950 e0f414e234e7a7908bbba7c07772c662 151 Gene3D G3DSA:1.20.1260.10 2 146 4.1E-24 T 31-10-2018 IPR012347 Ferritin-like BRM88_24200 84c8eb704b15ed085af74ac4654af123 542 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 57 153 8.5E-27 T 31-10-2018 IPR032093 Phospholipase D, N-terminal BRM88_24200 84c8eb704b15ed085af74ac4654af123 542 Gene3D G3DSA:3.60.21.70 159 542 6.3E-127 T 31-10-2018 IPR038607 PhoD-like superfamily BRM88_24200 84c8eb704b15ed085af74ac4654af123 542 SUPERFAMILY SSF56300 164 512 2.28E-35 T 31-10-2018 BRM88_24200 84c8eb704b15ed085af74ac4654af123 542 Pfam PF09423 PhoD-like phosphatase 167 510 2.1E-104 T 31-10-2018 IPR018946 Alkaline phosphatase D-related BRM88_24200 84c8eb704b15ed085af74ac4654af123 542 Gene3D G3DSA:2.60.40.380 48 157 8.5E-31 T 31-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 SUPERFAMILY SSF51735 105 293 3.88E-58 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 SUPERFAMILY SSF52283 7 140 1.89E-31 T 31-10-2018 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 181 - T 31-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 16 319 1.0E-21 T 31-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 292 5.3E-59 T 31-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 Gene3D G3DSA:3.40.50.720 8 315 1.1E-105 T 31-10-2018 BRM88_17410 08cb5137af2a4f84ee4775a9b0d635ce 357 Gene3D G3DSA:3.40.50.720 102 292 1.1E-105 T 31-10-2018 BRM88_21145 58e214d51f2503a61b2e8893c0451898 320 SMART SM01126 137 285 3.7E-50 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21145 58e214d51f2503a61b2e8893c0451898 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 8.8E-11 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_21145 58e214d51f2503a61b2e8893c0451898 320 Pfam PF12762 ISXO2-like transposase domain 137 285 1.8E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_21090 3798d366f3acf1eb101b7cee21c47996 92 Pfam PF04359 Protein of unknown function (DUF493) 11 92 1.4E-20 T 31-10-2018 IPR007454 Uncharacterised protein family UPF0250 BRM88_21090 3798d366f3acf1eb101b7cee21c47996 92 SUPERFAMILY SSF117991 6 92 9.94E-19 T 31-10-2018 IPR027471 YbeD-like domain superfamily BRM88_21090 3798d366f3acf1eb101b7cee21c47996 92 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 4 92 19.28 T 31-10-2018 IPR007454 Uncharacterised protein family UPF0250 BRM88_21090 3798d366f3acf1eb101b7cee21c47996 92 Gene3D G3DSA:3.30.70.260 5 92 1.4E-14 T 31-10-2018 BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 Gene3D G3DSA:2.30.30.60 683 732 4.5E-11 T 31-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 Pfam PF00924 Mechanosensitive ion channel 626 813 6.0E-43 T 31-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 SUPERFAMILY SSF82861 584 666 2.62E-11 T 31-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 SUPERFAMILY SSF82689 735 828 1.44E-14 T 31-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 Gene3D G3DSA:3.30.70.100 735 828 1.3E-12 T 31-10-2018 BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 SUPERFAMILY SSF50182 669 733 4.25E-15 T 31-10-2018 IPR010920 LSM domain superfamily BRM88_00410 fde5cb5a5e069c89e0cef6c6456b0bcf 852 Pfam PF12607 Protein of unknown function (DUF3772) 165 226 5.7E-12 T 31-10-2018 IPR022249 Domain of unknown function DUF3772 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 Gene3D G3DSA:1.20.120.1780 181 298 8.5E-12 T 31-10-2018 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 23 296 2.3E-107 T 31-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 16 299 29.107 T 31-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 Pfam PF01040 UbiA prenyltransferase family 39 283 3.9E-60 T 31-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 Gene3D G3DSA:1.10.357.140 35 180 3.7E-40 T 31-10-2018 BRM88_02245 c26de2ebb045392a679fcd26b2338ed8 299 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 78 100 - T 31-10-2018 IPR030470 UbiA prenyltransferase conserved site BRM88_14260 c2213f233c6b9f478b3c323167d2f302 306 Gene3D G3DSA:3.40.190.10 39 266 2.3E-25 T 31-10-2018 BRM88_14260 c2213f233c6b9f478b3c323167d2f302 306 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 38 285 5.5E-45 T 31-10-2018 BRM88_14260 c2213f233c6b9f478b3c323167d2f302 306 Gene3D G3DSA:3.40.190.10 118 236 2.3E-25 T 31-10-2018 BRM88_14260 c2213f233c6b9f478b3c323167d2f302 306 SUPERFAMILY SSF53850 31 283 3.26E-19 T 31-10-2018 BRM88_23975 97b6425b848f23aa4b5d421b0329321f 401 Pfam PF00487 Fatty acid desaturase 20 241 4.1E-11 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 Pfam PF00177 Ribosomal protein S7p/S5e 1 148 3.2E-64 T 31-10-2018 IPR023798 Ribosomal protein S7 domain BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 31-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 Gene3D G3DSA:1.10.455.10 2 155 1.5E-57 T 31-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 3.6E-64 T 31-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 SUPERFAMILY SSF47973 3 148 4.58E-57 T 31-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 PIRSF PIRSF002122 2 155 3.0E-60 T 31-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 BRM88_19145 8ac5d0620ba67088132e5fbfe50e6cec 155 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 155 35.348 T 31-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BRM88_23215 3b34b127b96dd673a473350880ae4e9c 462 Pfam PF13546 DDE superfamily endonuclease 18 291 1.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_23215 3b34b127b96dd673a473350880ae4e9c 462 SUPERFAMILY SSF53098 8 442 7.59E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 SUPERFAMILY SSF52172 127 260 5.12E-23 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 Gene3D G3DSA:3.40.50.2300 1 123 2.8E-17 T 31-10-2018 BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 SMART SM00448 1 113 7.2E-5 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 SMART SM00448 125 248 7.7E-19 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 SUPERFAMILY SSF52172 1 118 3.98E-20 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 Pfam PF00072 Response regulator receiver domain 1 113 2.6E-12 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 Pfam PF00072 Response regulator receiver domain 127 248 2.4E-16 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_22850 e6d1dc5c851374fbde9f98e73140e775 264 Gene3D G3DSA:3.40.50.2300 125 261 3.2E-22 T 31-10-2018 BRM88_19895 5291d7c84bab3e455e6bb1d68aa1b625 135 SUPERFAMILY SSF47473 83 133 4.64E-7 T 31-10-2018 IPR011992 EF-hand domain pair BRM88_19895 5291d7c84bab3e455e6bb1d68aa1b625 135 Gene3D G3DSA:1.10.238.10 52 135 8.3E-10 T 31-10-2018 BRM88_19895 5291d7c84bab3e455e6bb1d68aa1b625 135 Pfam PF13202 EF hand 86 102 2.0E-6 T 31-10-2018 IPR002048 EF-hand domain GO:0005509 BRM88_10035 d3cd3abf11601e1a9731c90cfaa945b3 281 Pfam PF10099 Anti-sigma-K factor rskA 70 272 7.9E-26 T 31-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 BRM88_10035 d3cd3abf11601e1a9731c90cfaa945b3 281 Gene3D G3DSA:1.10.10.1320 13 110 2.1E-5 T 31-10-2018 BRM88_10655 91a472b30bea82977db4e3d31e0c2d3b 87 Gene3D G3DSA:2.30.42.10 2 86 6.2E-11 T 31-10-2018 BRM88_10655 91a472b30bea82977db4e3d31e0c2d3b 87 Pfam PF13180 PDZ domain 13 74 3.2E-7 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_10655 91a472b30bea82977db4e3d31e0c2d3b 87 SUPERFAMILY SSF50156 8 73 3.55E-10 T 31-10-2018 IPR036034 PDZ superfamily GO:0005515 BRM88_10655 91a472b30bea82977db4e3d31e0c2d3b 87 SMART SM00228 2 73 1.2E-6 T 31-10-2018 IPR001478 PDZ domain GO:0005515 BRM88_08910 23f47ccb77594991f4503f116faff450 338 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 6 336 5.3E-161 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid BRM88_08910 23f47ccb77594991f4503f116faff450 338 Pfam PF05125 Phage major capsid protein, P2 family 8 334 1.5E-139 T 31-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid BRM88_08385 7c4f520d166151e580f8a2ad4f87ff26 106 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 25.658 T 31-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08385 7c4f520d166151e580f8a2ad4f87ff26 106 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 3.1E-37 T 31-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08385 7c4f520d166151e580f8a2ad4f87ff26 106 SUPERFAMILY SSF141091 1 100 5.1E-34 T 31-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_08385 7c4f520d166151e580f8a2ad4f87ff26 106 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 31-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BRM88_08385 7c4f520d166151e580f8a2ad4f87ff26 106 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 1.9E-34 T 31-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BRM88_16655 c3ccbe20ded1d0e70b41f47f983fd5e5 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_16655 c3ccbe20ded1d0e70b41f47f983fd5e5 394 Pfam PF00872 Transposase, Mutator family 11 368 4.4E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_11250 5714507a4f0ee067369b86512071724b 272 Gene3D G3DSA:2.130.10.10 43 264 2.3E-9 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_11250 5714507a4f0ee067369b86512071724b 272 Pfam PF05096 Glutamine cyclotransferase 40 270 3.9E-93 T 31-10-2018 IPR007788 Glutaminyl-peptide cyclotransferase GO:0016603|GO:0017186 MetaCyc: PWY-7942 BRM88_11250 5714507a4f0ee067369b86512071724b 272 SUPERFAMILY SSF50969 41 269 4.71E-21 T 31-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like BRM88_15765 20e02bcf19fbcea18f4afa090a4ebba9 181 Gene3D G3DSA:3.30.1370.110 56 181 5.9E-41 T 31-10-2018 BRM88_15765 20e02bcf19fbcea18f4afa090a4ebba9 181 SMART SM00463 95 179 5.0E-14 T 31-10-2018 IPR002625 Smr domain BRM88_15765 20e02bcf19fbcea18f4afa090a4ebba9 181 Pfam PF01713 Smr domain 98 178 1.5E-21 T 31-10-2018 IPR002625 Smr domain BRM88_15765 20e02bcf19fbcea18f4afa090a4ebba9 181 SUPERFAMILY SSF160443 96 178 8.5E-17 T 31-10-2018 IPR036063 Smr domain superfamily BRM88_06640 431860042321c4a45701f5f30c4da066 222 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 9 195 6.3E-64 T 31-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BRM88_06640 431860042321c4a45701f5f30c4da066 222 SUPERFAMILY SSF53328 8 203 1.44E-58 T 31-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_06640 431860042321c4a45701f5f30c4da066 222 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 9 192 28.44 T 31-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BRM88_06640 431860042321c4a45701f5f30c4da066 222 Pfam PF00551 Formyl transferase 9 184 1.5E-51 T 31-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BRM88_06640 431860042321c4a45701f5f30c4da066 222 Gene3D G3DSA:3.40.50.170 1 208 9.6E-71 T 31-10-2018 BRM88_10495 9a6b97e81963cde34950cdb0508df709 229 Gene3D G3DSA:3.30.40.60 93 196 1.8E-23 T 31-10-2018 BRM88_10495 9a6b97e81963cde34950cdb0508df709 229 SMART SM00507 111 164 1.3E-9 T 31-10-2018 IPR003615 HNH nuclease BRM88_10495 9a6b97e81963cde34950cdb0508df709 229 Pfam PF14279 HNH endonuclease 124 178 1.9E-16 T 31-10-2018 IPR029471 HNH endonuclease 5 BRM88_08795 127190709379d0d5a7d00add86a44efe 328 SUPERFAMILY SSF69279 6 179 1.53E-27 T 31-10-2018 BRM88_08795 127190709379d0d5a7d00add86a44efe 328 Pfam PF05954 Phage late control gene D protein (GPD) 70 313 3.0E-27 T 31-10-2018 BRM88_02095 6a39fbc667bd583f022e9e9d52397355 306 Pfam PF05036 Sporulation related domain 197 266 7.6E-8 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_02095 6a39fbc667bd583f022e9e9d52397355 306 Pfam PF05036 Sporulation related domain 163 229 6.5E-7 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_02095 6a39fbc667bd583f022e9e9d52397355 306 Gene3D G3DSA:3.30.70.1070 197 268 3.4E-5 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_02095 6a39fbc667bd583f022e9e9d52397355 306 SUPERFAMILY SSF110997 163 230 7.59E-5 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_03585 90e155927d6eac148f1d317e62194069 228 SUPERFAMILY SSF56925 56 228 1.18E-18 T 31-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BRM88_03585 90e155927d6eac148f1d317e62194069 228 Gene3D G3DSA:2.40.160.20 47 228 2.2E-40 T 31-10-2018 BRM88_03585 90e155927d6eac148f1d317e62194069 228 Pfam PF03922 OmpW family 70 228 1.6E-37 T 31-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 BRM88_17730 904037ed48ec07fdc2e799549a2d85b3 211 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 6 167 23.903 T 31-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BRM88_17730 904037ed48ec07fdc2e799549a2d85b3 211 Gene3D G3DSA:3.30.160.150 21 174 1.7E-36 T 31-10-2018 BRM88_17730 904037ed48ec07fdc2e799549a2d85b3 211 Pfam PF04390 Lipopolysaccharide-assembly 39 162 5.5E-6 T 31-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BRM88_21685 68e25ef0e0dc4eeb8b0b4052acce32db 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 7.9E-6 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_21685 68e25ef0e0dc4eeb8b0b4052acce32db 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 163 187 7.9E-6 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_21685 68e25ef0e0dc4eeb8b0b4052acce32db 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 236 260 7.9E-6 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_21685 68e25ef0e0dc4eeb8b0b4052acce32db 516 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 381 407 7.9E-6 T 31-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_21685 68e25ef0e0dc4eeb8b0b4052acce32db 516 Pfam PF00361 Proton-conducting membrane transporter 129 411 7.4E-32 T 31-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_10135 2b168cc8bbaa3d822f040f082e415d25 491 Pfam PF05598 Transposase domain (DUF772) 75 149 1.7E-15 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_17575 823949413f14cbf17bb29515b32c8a9c 249 SUPERFAMILY SSF54001 121 248 4.91E-40 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_17575 823949413f14cbf17bb29515b32c8a9c 249 Pfam PF00877 NlpC/P60 family 139 247 1.4E-29 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BRM88_02705 a2221a928b1eea6b3f9f31ba43b04db5 193 Pfam PF14103 Domain of unknown function (DUF4276) 9 181 1.5E-11 T 31-10-2018 IPR025455 Protein of unknown function DUF4276 BRM88_03155 b501aad9a94d69e87a5a53fd8c469fe4 422 Pfam PF12040 Domain of unknown function (DUF3526) 274 415 4.2E-32 T 31-10-2018 IPR021913 Protein of unknown function DUF3526 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 3 291 7.0E-81 T 31-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 Pfam PF00561 alpha/beta hydrolase fold 29 279 8.9E-24 T 31-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 57 68 4.7E-12 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 102 116 4.7E-12 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 30 38 4.7E-12 T 31-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 PIRSF PIRSF005539 1 300 3.0E-155 T 31-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 SUPERFAMILY SSF53474 8 292 7.63E-57 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_06490 bec20d8287d3200587b9c327870c65a3 313 Gene3D G3DSA:3.40.50.1820 2 293 6.5E-85 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02390 da89849b87ed6169b3080859e9559076 164 SUPERFAMILY SSF52218 1 146 1.49E-23 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_02390 da89849b87ed6169b3080859e9559076 164 TIGRFAM TIGR01754 flav_RNR: putative ribonucleotide reductase-associated flavodoxin 1 144 8.9E-55 T 31-10-2018 IPR010088 Ribonucleotide reductase-associated flavodoxin, putative BRM88_02390 da89849b87ed6169b3080859e9559076 164 Gene3D G3DSA:3.40.50.360 1 146 1.2E-18 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_00700 c4671601b58e43305da826fee54c386f 132 Pfam PF10116 Protein required for attachment to host cells 10 131 9.1E-24 T 31-10-2018 IPR019291 Host attachment protein BRM88_01220 414dfd2e0317fbbfdb9cd1ccbd1861fa 1012 SUPERFAMILY SSF49452 31 99 1.96E-7 T 31-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BRM88_01220 414dfd2e0317fbbfdb9cd1ccbd1861fa 1012 Pfam PF00593 TonB dependent receptor 414 1010 1.3E-22 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_01220 414dfd2e0317fbbfdb9cd1ccbd1861fa 1012 SUPERFAMILY SSF56935 115 1009 2.38E-57 T 31-10-2018 BRM88_01220 414dfd2e0317fbbfdb9cd1ccbd1861fa 1012 Pfam PF13620 Carboxypeptidase regulatory-like domain 47 103 9.1E-8 T 31-10-2018 BRM88_22475 8b0420d2ef1617597076c5f63a44ef88 833 SUPERFAMILY SSF52540 37 207 2.27E-13 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_22475 8b0420d2ef1617597076c5f63a44ef88 833 Pfam PF04851 Type III restriction enzyme, res subunit 32 200 4.1E-9 T 31-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BRM88_22475 8b0420d2ef1617597076c5f63a44ef88 833 Gene3D G3DSA:3.40.50.300 25 217 1.7E-13 T 31-10-2018 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 227 24.914 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 Pfam PF02107 Flagellar L-ring protein 48 227 3.6E-57 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 PRINTS PR01008 Flagellar L-ring protein signature 190 204 1.4E-22 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 PRINTS PR01008 Flagellar L-ring protein signature 143 158 1.4E-22 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 PRINTS PR01008 Flagellar L-ring protein signature 169 185 1.4E-22 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 PRINTS PR01008 Flagellar L-ring protein signature 70 82 1.4E-22 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_13560 fd619f6161bb733884dc545cd0d44969 230 PRINTS PR01008 Flagellar L-ring protein signature 206 220 1.4E-22 T 31-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BRM88_08450 eea8bcee430cbd82268ca427f1a73cdd 111 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 17 110 8.6E-38 T 31-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 BRM88_08450 eea8bcee430cbd82268ca427f1a73cdd 111 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 22 95 8.9E-15 T 31-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BRM88_08575 0008984c627e78c403be504e3aa5b656 225 Pfam PF06259 Alpha/beta hydrolase 83 137 1.5E-4 T 31-10-2018 IPR010427 Protein of unknown function DUF1023 BRM88_08575 0008984c627e78c403be504e3aa5b656 225 SUPERFAMILY SSF53474 27 223 1.99E-18 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23320 8953fc21d3015413c836a42c8aec2a14 128 Pfam PF03203 MerC mercury resistance protein 9 118 2.7E-21 T 31-10-2018 IPR004891 Mercury transport protein MerC GO:0015097|GO:0015694|GO:0016020 BRM88_23060 1463e7641d4dd8930ea2e08d9419d84f 294 SUPERFAMILY SSF51730 12 277 6.08E-44 T 31-10-2018 IPR029041 FAD-linked oxidoreductase-like BRM88_23060 1463e7641d4dd8930ea2e08d9419d84f 294 Gene3D G3DSA:3.20.20.220 20 264 7.5E-29 T 31-10-2018 BRM88_23060 1463e7641d4dd8930ea2e08d9419d84f 294 Pfam PF02219 Methylenetetrahydrofolate reductase 46 218 3.2E-9 T 31-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BRM88_24465 2a1e0a5a3281765abb24d9bbf0633add 188 Pfam PF04632 Fusaric acid resistance protein family 69 166 1.3E-12 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 BRM88_24465 2a1e0a5a3281765abb24d9bbf0633add 188 Pfam PF04632 Fusaric acid resistance protein family 10 66 1.0E-22 T 31-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Gene3D G3DSA:1.10.287.1080 115 206 1.7E-24 T 31-10-2018 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 SUPERFAMILY SSF141734 13 113 3.92E-43 T 31-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 17.805 T 31-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 13 206 34.94 T 31-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 38 110 1.7E-31 T 31-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 119 198 2.0E-25 T 31-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Gene3D G3DSA:3.10.20.400 6 102 4.5E-35 T 31-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 61 110 9.0E-24 T 31-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 122 202 3.0E-10 T 31-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 BRM88_11770 9f904e71d66013e2f2cead68dfcbaf6a 206 SUPERFAMILY SSF101386 117 205 3.05E-20 T 31-10-2018 BRM88_20925 a9218cce6d0d7c106db95014dc4b6268 388 Pfam PF07786 Protein of unknown function (DUF1624) 21 173 2.5E-10 T 31-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 BRM88_06500 86420fe082192614c9dd88efcfe351d4 462 Pfam PF00324 Amino acid permease 28 458 1.7E-91 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BRM88_06500 86420fe082192614c9dd88efcfe351d4 462 Gene3D G3DSA:1.20.1740.10 20 462 7.7E-69 T 31-10-2018 BRM88_06500 86420fe082192614c9dd88efcfe351d4 462 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BRM88_06500 86420fe082192614c9dd88efcfe351d4 462 PIRSF PIRSF006060 5 460 3.1E-69 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_07165 d6f0a42c451f23f81d178d449b134af5 109 SUPERFAMILY SSF50022 4 106 3.14E-25 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_07165 d6f0a42c451f23f81d178d449b134af5 109 Pfam PF00355 Rieske [2Fe-2S] domain 4 95 5.1E-15 T 31-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BRM88_07165 d6f0a42c451f23f81d178d449b134af5 109 Gene3D G3DSA:2.102.10.10 1 109 1.0E-27 T 31-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BRM88_18625 6c76e2eb23b8aa903794d7df0f10442f 166 PIRSF PIRSF028301 2 166 6.7E-67 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_18625 6c76e2eb23b8aa903794d7df0f10442f 166 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 163 1.4E-60 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_18625 6c76e2eb23b8aa903794d7df0f10442f 166 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 165 2.2E-59 T 31-10-2018 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 BRM88_23795 f804f829047037353ac010efd3044c41 181 Gene3D G3DSA:3.90.1340.10 1 59 3.8E-12 T 31-10-2018 IPR037053 Phage tail collar domain superfamily BRM88_23795 f804f829047037353ac010efd3044c41 181 Pfam PF07484 Phage Tail Collar Domain 7 63 3.7E-22 T 31-10-2018 IPR011083 Phage tail collar domain BRM88_23795 f804f829047037353ac010efd3044c41 181 SUPERFAMILY SSF88874 1 175 4.01E-45 T 31-10-2018 BRM88_15810 c847730cbb91e97d5518846168121932 276 Gene3D G3DSA:3.20.20.70 2 273 2.0E-102 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_15810 c847730cbb91e97d5518846168121932 276 SUPERFAMILY SSF51569 2 270 2.56E-106 T 31-10-2018 BRM88_15810 c847730cbb91e97d5518846168121932 276 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 13 269 4.2E-129 T 31-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_15810 c847730cbb91e97d5518846168121932 276 Pfam PF00793 DAHP synthetase I family 8 266 8.9E-67 T 31-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_15810 c847730cbb91e97d5518846168121932 276 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 8 270 53.217 T 31-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 SUPERFAMILY SSF52266 20 292 6.83E-16 T 31-10-2018 BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 SUPERFAMILY SSF103515 307 563 9.42E-33 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 PIRSF PIRSF037375 1 594 1.0E-205 T 31-10-2018 IPR017186 Lipase, autotransporter EstA BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 Gene3D G3DSA:2.40.128.130 302 594 3.8E-46 T 31-10-2018 IPR036709 Autotransporter beta-domain superfamily BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 Gene3D G3DSA:3.40.50.1110 9 298 4.6E-78 T 31-10-2018 IPR036514 SGNH hydrolase superfamily BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 22 286 1.4E-9 T 31-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 Pfam PF03797 Autotransporter beta-domain 331 561 5.3E-40 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_17920 8700a6432ceb191fab72c90d466a2bc0 594 SMART SM00869 327 584 5.9E-32 T 31-10-2018 IPR005546 Autotransporter beta-domain BRM88_06035 59eac6decd4e958c7d504169416206d5 224 Gene3D G3DSA:1.20.910.10 4 217 2.7E-54 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_06035 59eac6decd4e958c7d504169416206d5 224 Pfam PF14518 Iron-containing redox enzyme 39 205 4.6E-26 T 31-10-2018 BRM88_06035 59eac6decd4e958c7d504169416206d5 224 SUPERFAMILY SSF48613 1 213 8.48E-55 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_16065 d51555064b2a129d6f1ab8d5a85bc7e4 234 Gene3D G3DSA:1.25.40.10 133 224 8.2E-10 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_16065 d51555064b2a129d6f1ab8d5a85bc7e4 234 SUPERFAMILY SSF48452 96 206 5.51E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_10015 b4c9097924444c3987355687fe49bd54 431 SUPERFAMILY SSF53335 23 369 5.05E-72 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_10015 b4c9097924444c3987355687fe49bd54 431 Pfam PF02353 Mycolic acid cyclopropane synthetase 138 406 5.2E-75 T 31-10-2018 BRM88_10015 b4c9097924444c3987355687fe49bd54 431 PIRSF PIRSF003085 19 428 7.5E-113 T 31-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 BRM88_10015 b4c9097924444c3987355687fe49bd54 431 Gene3D G3DSA:3.40.50.150 142 420 4.3E-97 T 31-10-2018 BRM88_08805 5589a83ec1bf7ae99442c34b2bebfcc2 956 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 199 546 2.5E-70 T 31-10-2018 IPR010090 Phage tail tape measure protein BRM88_08805 5589a83ec1bf7ae99442c34b2bebfcc2 956 Pfam PF10145 Phage-related minor tail protein 237 436 3.4E-32 T 31-10-2018 IPR010090 Phage tail tape measure protein BRM88_12450 4e00c0705d3039392aa24056530f0037 592 SUPERFAMILY SSF53187 38 322 2.12E-46 T 31-10-2018 BRM88_12450 4e00c0705d3039392aa24056530f0037 592 Pfam PF00246 Zinc carboxypeptidase 45 231 2.3E-34 T 31-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BRM88_12450 4e00c0705d3039392aa24056530f0037 592 SMART SM00631 40 273 2.7E-4 T 31-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BRM88_12450 4e00c0705d3039392aa24056530f0037 592 Gene3D G3DSA:3.40.630.10 24 324 8.3E-30 T 31-10-2018 BRM88_15415 9caf375c20853a30fb3d175d1ad7baf8 400 SUPERFAMILY SSF53383 3 390 6.25E-106 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_15415 9caf375c20853a30fb3d175d1ad7baf8 400 Gene3D G3DSA:3.90.1150.10 19 387 5.5E-140 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_15415 9caf375c20853a30fb3d175d1ad7baf8 400 Pfam PF00155 Aminotransferase class I and II 44 381 2.6E-31 T 31-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BRM88_15415 9caf375c20853a30fb3d175d1ad7baf8 400 Gene3D G3DSA:3.40.640.10 66 282 5.5E-140 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_15560 c05dbe921cadadd3c3efd5d96729f7ec 112 Pfam PF06877 Regulator of ribonuclease activity B 5 109 9.5E-20 T 31-10-2018 IPR009671 Regulator of ribonuclease activity B domain BRM88_15560 c05dbe921cadadd3c3efd5d96729f7ec 112 SUPERFAMILY SSF89946 18 106 8.5E-6 T 31-10-2018 IPR036701 RraB-like superfamily BRM88_15230 ff668c4d88ae8fc289a98ced1963390b 198 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 18 169 29.723 T 31-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BRM88_15230 ff668c4d88ae8fc289a98ced1963390b 198 Pfam PF03975 CheD chemotactic sensory transduction 66 164 1.2E-32 T 31-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BRM88_15230 ff668c4d88ae8fc289a98ced1963390b 198 SUPERFAMILY SSF64438 24 169 1.28E-50 T 31-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BRM88_15230 ff668c4d88ae8fc289a98ced1963390b 198 Gene3D G3DSA:3.30.1330.200 22 177 1.2E-51 T 31-10-2018 IPR038592 CheD-like superfamily BRM88_03115 2951c5bdfac2e9d0703278ce5326c602 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_03115 2951c5bdfac2e9d0703278ce5326c602 411 Pfam PF01610 Transposase 155 389 5.4E-63 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_05125 3f869e2fbdc2179d9e0c6283b45a1d26 253 Pfam PF12811 Bax inhibitor 1 like 23 251 7.4E-79 T 31-10-2018 IPR010539 Protein of unknown function UCP009160 BRM88_05125 3f869e2fbdc2179d9e0c6283b45a1d26 253 PIRSF PIRSF009160 1 253 7.1E-101 T 31-10-2018 IPR010539 Protein of unknown function UCP009160 BRM88_22395 aff4fe7928ee47dc386a79ef2716d73f 144 Pfam PF00581 Rhodanese-like domain 44 135 4.8E-18 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_22395 aff4fe7928ee47dc386a79ef2716d73f 144 SMART SM00450 42 139 1.3E-23 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_22395 aff4fe7928ee47dc386a79ef2716d73f 144 Gene3D G3DSA:3.40.250.10 41 144 7.0E-26 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_22395 aff4fe7928ee47dc386a79ef2716d73f 144 SUPERFAMILY SSF52821 23 143 1.11E-29 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_03440 eb3e21f11d6c5bfb63c69f975466bca1 154 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 10 136 35.364 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BRM88_03440 eb3e21f11d6c5bfb63c69f975466bca1 154 SUPERFAMILY SSF51316 15 138 1.43E-52 T 31-10-2018 IPR011057 Mss4-like superfamily BRM88_03440 eb3e21f11d6c5bfb63c69f975466bca1 154 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 16 136 3.9E-45 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BRM88_03440 eb3e21f11d6c5bfb63c69f975466bca1 154 Pfam PF01641 SelR domain 20 134 8.9E-47 T 31-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BRM88_03440 eb3e21f11d6c5bfb63c69f975466bca1 154 Gene3D G3DSA:2.170.150.20 10 154 1.8E-60 T 31-10-2018 BRM88_11860 d910e703151c94e4d64da021eea2399e 56 Pfam PF05857 TraX protein 7 51 1.5E-7 T 31-10-2018 IPR008875 TraX BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 SUPERFAMILY SSF53756 353 696 9.42E-23 T 31-10-2018 BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 Pfam PF13692 Glycosyl transferases group 1 527 665 5.3E-26 T 31-10-2018 BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 Gene3D G3DSA:3.40.50.2000 523 683 8.5E-18 T 31-10-2018 BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 Gene3D G3DSA:3.90.550.10 62 296 2.2E-52 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 SUPERFAMILY SSF53448 61 316 1.64E-54 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_09075 b4a0fdaa9c79fced89e095c1f6033701 700 Pfam PF00535 Glycosyl transferase family 2 75 198 8.4E-28 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_23665 990de0ee39dae536ba359c7d96ae5aa8 142 Gene3D G3DSA:3.30.300.20 49 141 9.9E-35 T 31-10-2018 IPR015946 K homology domain-like, alpha/beta BRM88_23665 990de0ee39dae536ba359c7d96ae5aa8 142 Pfam PF02566 OsmC-like protein 44 139 1.5E-19 T 31-10-2018 IPR003718 OsmC/Ohr family BRM88_23665 990de0ee39dae536ba359c7d96ae5aa8 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 8 140 2.5E-55 T 31-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 BRM88_23665 990de0ee39dae536ba359c7d96ae5aa8 142 Gene3D G3DSA:2.20.25.10 1 48 3.3E-23 T 31-10-2018 BRM88_23665 990de0ee39dae536ba359c7d96ae5aa8 142 SUPERFAMILY SSF82784 5 141 4.06E-45 T 31-10-2018 IPR036102 OsmC/Ohr superfamily BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 31-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 SUPERFAMILY SSF48256 8 429 2.09E-166 T 31-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 Gene3D G3DSA:1.10.580.10 58 412 3.8E-146 T 31-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PIRSF PIRSF001369 38 429 1.5E-161 T 31-10-2018 IPR024176 Citrate synthase, bacterial-type BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 Gene3D G3DSA:1.10.230.10 269 377 3.8E-146 T 31-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 Pfam PF00285 Citrate synthase, C-terminal domain 47 412 1.0E-135 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 Gene3D G3DSA:2.20.28.60 5 51 8.1E-16 T 31-10-2018 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 423 6.2E-207 T 31-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 297 317 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 360 376 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 380 394 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 242 270 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 220 235 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_05885 ee251147aa5c30f57ac839b26c5750d3 429 PRINTS PR00143 Citrate synthase signature 166 179 1.0E-54 T 31-10-2018 IPR002020 Citrate synthase GO:0046912 BRM88_20150 8554b9399bc3cea803d0ed5ac312e1d8 81 Pfam PF10636 Hemin uptake protein hemP 46 81 5.7E-18 T 31-10-2018 IPR019600 Hemin uptake protein HemP BRM88_20150 8554b9399bc3cea803d0ed5ac312e1d8 81 Gene3D G3DSA:2.10.70.10 42 81 1.0E-15 T 31-10-2018 BRM88_07240 89fafbf55f9aa2abde00e5678351d5bb 213 Gene3D G3DSA:2.70.70.10 64 209 1.3E-35 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_07240 89fafbf55f9aa2abde00e5678351d5bb 213 SUPERFAMILY SSF51261 77 204 1.41E-26 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_07240 89fafbf55f9aa2abde00e5678351d5bb 213 Pfam PF01551 Peptidase family M23 102 196 7.9E-18 T 31-10-2018 IPR016047 Peptidase M23 BRM88_13375 594a0ed8d322588f18ae5e9771c28815 116 SUPERFAMILY SSF54913 27 109 1.27E-6 T 31-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BRM88_04975 cf9b2666fc94fbd26772cca214f35274 296 Pfam PF00089 Trypsin 214 258 1.2E-4 T 31-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 BRM88_04975 cf9b2666fc94fbd26772cca214f35274 296 Gene3D G3DSA:2.40.10.10 51 260 4.7E-5 T 31-10-2018 BRM88_04975 cf9b2666fc94fbd26772cca214f35274 296 Gene3D G3DSA:2.40.10.10 151 253 4.7E-5 T 31-10-2018 BRM88_04975 cf9b2666fc94fbd26772cca214f35274 296 SUPERFAMILY SSF50494 75 262 2.66E-11 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_23335 9a17d3489b4edc0fd70c065234bda6fb 241 SUPERFAMILY SSF103481 8 87 2.22E-7 T 31-10-2018 BRM88_01575 27d5ec750d929cd5a8d696c7f9cfc9a2 142 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 12 124 0.008 T 31-10-2018 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 Gene3D G3DSA:3.30.300.30 92 200 4.5E-32 T 31-10-2018 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 191 4.5E-72 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 23 33 1.5E-26 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 96 111 1.5E-26 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 116 129 1.5E-26 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 76 89 1.5E-26 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 164 176 1.5E-26 T 31-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 Gene3D G3DSA:3.30.70.1530 19 90 2.8E-19 T 31-10-2018 BRM88_00475 653a8b403a527a493a6ac376354e1171 253 Pfam PF01514 Secretory protein of YscJ/FliF family 7 185 1.5E-28 T 31-10-2018 IPR006182 Secretory protein YscJ/FliF BRM88_20640 01520d763baa8c252d71589ed07f0aec 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 83 3.0E-19 T 31-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BRM88_20640 01520d763baa8c252d71589ed07f0aec 91 Gene3D G3DSA:1.20.58.1000 1 91 1.7E-29 T 31-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily BRM88_06190 171ed74227cce2380f61e8d08225f36d 134 Pfam PF12889 Protein of unknown function (DUF3829) 2 128 1.0E-27 T 31-10-2018 IPR024291 Protein of unknown function DUF3829 BRM88_08465 bc6c1bdf0ccd71c689e5cbd641f61fd8 539 SUPERFAMILY SSF48452 261 372 1.9E-6 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_08465 bc6c1bdf0ccd71c689e5cbd641f61fd8 539 Gene3D G3DSA:1.25.40.10 231 432 1.9E-7 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_05910 dcfbe38d0d27b4182521ba2448237662 221 Gene3D G3DSA:3.30.70.60 96 211 2.4E-34 T 31-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BRM88_05910 dcfbe38d0d27b4182521ba2448237662 221 PIRSF PIRSF016482 1 218 4.5E-87 T 31-10-2018 IPR007445 Pilus assembly protein, PilO BRM88_05910 dcfbe38d0d27b4182521ba2448237662 221 Pfam PF04350 Pilus assembly protein, PilO 51 201 1.6E-49 T 31-10-2018 IPR007445 Pilus assembly protein, PilO BRM88_20620 128b647187bc6187b97fc06f7d776c00 75 Pfam PF14329 Domain of unknown function (DUF4386) 15 73 1.7E-9 T 31-10-2018 IPR025495 Protein of unknown function DUF4386 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 SUPERFAMILY SSF53067 5 110 8.42E-20 T 31-10-2018 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 Gene3D G3DSA:3.30.420.40 5 233 2.2E-53 T 31-10-2018 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 Gene3D G3DSA:3.30.420.490 114 228 2.2E-53 T 31-10-2018 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 SUPERFAMILY SSF53067 113 236 1.34E-22 T 31-10-2018 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 240 14.443 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 Pfam PF03309 Type III pantothenate kinase 5 192 5.6E-36 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BRM88_02090 0a3b150b8218c5100b2c05bbb222dc27 242 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 6 234 1.8E-21 T 31-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BRM88_00240 b21630e8d57c3f8a9f8311263fc2fddb 469 SUPERFAMILY SSF51905 186 445 2.55E-7 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_00240 b21630e8d57c3f8a9f8311263fc2fddb 469 SUPERFAMILY SSF51905 1 218 1.05E-14 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_00240 b21630e8d57c3f8a9f8311263fc2fddb 469 Pfam PF13454 FAD-NAD(P)-binding 7 149 1.3E-23 T 31-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain BRM88_00240 b21630e8d57c3f8a9f8311263fc2fddb 469 Pfam PF00890 FAD binding domain 395 424 3.3E-5 T 31-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BRM88_05680 f1d4bfe2f83dc7d233451b3368fefa31 390 Gene3D G3DSA:2.40.160.10 23 390 2.3E-70 T 31-10-2018 IPR023614 Porin domain superfamily BRM88_05680 f1d4bfe2f83dc7d233451b3368fefa31 390 SUPERFAMILY SSF56935 108 388 1.89E-10 T 31-10-2018 BRM88_05680 f1d4bfe2f83dc7d233451b3368fefa31 390 Pfam PF07396 Phosphate-selective porin O and P 42 390 5.8E-93 T 31-10-2018 IPR010870 Phosphate-selective porin O/P BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 Pfam PF02049 Flagellar hook-basal body complex protein FliE 23 104 1.6E-28 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 16 105 16.382 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 29 103 8.8E-18 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 69 85 9.5E-12 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 103 9.5E-12 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_13685 c9a25bcdeea50e2a008ebfa734054873 105 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 34 50 9.5E-12 T 31-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 Gene3D G3DSA:3.30.70.1070 104 178 6.9E-7 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 Gene3D G3DSA:3.30.70.1070 280 357 4.3E-11 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 SUPERFAMILY SSF110997 104 165 6.41E-10 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 SUPERFAMILY SSF110997 284 357 9.68E-16 T 31-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 Pfam PF05036 Sporulation related domain 285 357 1.4E-16 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 Pfam PF05036 Sporulation related domain 102 179 4.9E-15 T 31-10-2018 IPR007730 Sporulation-like domain GO:0042834 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 PRINTS PR01217 Proline rich extensin signature 271 283 1.0E-9 T 31-10-2018 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 PRINTS PR01217 Proline rich extensin signature 90 102 1.0E-9 T 31-10-2018 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 PRINTS PR01217 Proline rich extensin signature 210 227 1.0E-9 T 31-10-2018 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 PRINTS PR01217 Proline rich extensin signature 234 259 1.0E-9 T 31-10-2018 BRM88_19640 3fad04457f22054a0ae5d23eeae995ee 360 PRINTS PR01217 Proline rich extensin signature 187 203 1.0E-9 T 31-10-2018 BRM88_08915 ab76eb46313bc9ff93871cd888d5e0f7 280 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 10 280 2.0E-106 T 31-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 BRM88_13920 49640ee04415d9bb1e7ab48a65695c37 153 SUPERFAMILY SSF46626 74 142 1.25E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_13920 49640ee04415d9bb1e7ab48a65695c37 153 Gene3D G3DSA:1.10.760.10 67 142 2.7E-23 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_13920 49640ee04415d9bb1e7ab48a65695c37 153 Pfam PF00034 Cytochrome c 68 142 2.4E-7 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08615 2c3a70d31d7f1633905b103e799835cf 149 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 139 27.971 T 31-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 BRM88_08615 2c3a70d31d7f1633905b103e799835cf 149 TIGRFAM TIGR02801 tolR: protein TolR 14 138 3.8E-40 T 31-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 BRM88_08615 2c3a70d31d7f1633905b103e799835cf 149 Gene3D G3DSA:3.30.420.270 59 132 6.8E-14 T 31-10-2018 BRM88_08615 2c3a70d31d7f1633905b103e799835cf 149 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 138 1.0E-26 T 31-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BRM88_22910 bee0ee81fed9388e5d9f39118168fe23 145 SUPERFAMILY SSF54637 3 139 3.91E-15 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_22910 bee0ee81fed9388e5d9f39118168fe23 145 Gene3D G3DSA:3.10.129.10 2 144 4.6E-7 T 31-10-2018 BRM88_14495 5f8cd8dff00227497e66457224233ea8 96 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 94 5.5E-18 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BRM88_14495 5f8cd8dff00227497e66457224233ea8 96 Gene3D G3DSA:3.30.2310.20 2 94 1.1E-14 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_23670 b37ca31b100beccf4328c13b33f0899f 287 Pfam PF11101 Protein of unknown function (DUF2884) 51 260 1.2E-29 T 31-10-2018 IPR021307 Protein of unknown function DUF2884 BRM88_22180 9533c3d4e5376b22e3a2e04b753b4758 217 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 57 215 1.8E-39 T 31-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 BRM88_22180 9533c3d4e5376b22e3a2e04b753b4758 217 SUPERFAMILY SSF47240 56 190 5.48E-17 T 31-10-2018 IPR009078 Ferritin-like superfamily BRM88_22180 9533c3d4e5376b22e3a2e04b753b4758 217 Gene3D G3DSA:1.20.1260.10 57 211 4.8E-6 T 31-10-2018 IPR012347 Ferritin-like BRM88_22180 9533c3d4e5376b22e3a2e04b753b4758 217 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 17 217 30.357 T 31-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 BRM88_15710 e53c16832c68d974fd86a07ef396d613 92 Gene3D G3DSA:2.30.30.100 1 70 9.4E-33 T 31-10-2018 BRM88_15710 e53c16832c68d974fd86a07ef396d613 92 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.333 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BRM88_15710 e53c16832c68d974fd86a07ef396d613 92 Pfam PF17209 Hfq protein 7 68 8.1E-31 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BRM88_15710 e53c16832c68d974fd86a07ef396d613 92 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 9.7E-30 T 31-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BRM88_15710 e53c16832c68d974fd86a07ef396d613 92 SUPERFAMILY SSF50182 7 68 6.93E-24 T 31-10-2018 IPR010920 LSM domain superfamily BRM88_20010 42c50b2e87dc59d7d42808bc6aedb2c9 127 Pfam PF04379 ApaG domain 20 104 3.2E-34 T 31-10-2018 IPR007474 ApaG domain BRM88_20010 42c50b2e87dc59d7d42808bc6aedb2c9 127 Hamap MF_00791 Protein ApaG [apaG]. 2 127 33.425 T 31-10-2018 IPR023065 Uncharacterised protein family ApaG BRM88_20010 42c50b2e87dc59d7d42808bc6aedb2c9 127 Gene3D G3DSA:2.60.40.1470 1 127 4.3E-48 T 31-10-2018 IPR036767 ApaG domain superfamily BRM88_20010 42c50b2e87dc59d7d42808bc6aedb2c9 127 SUPERFAMILY SSF110069 8 127 3.92E-46 T 31-10-2018 IPR036767 ApaG domain superfamily BRM88_24580 cddea502b09cbd6273aa4139f635be3f 436 SUPERFAMILY SSF103473 15 429 3.14E-82 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_24580 cddea502b09cbd6273aa4139f635be3f 436 Gene3D G3DSA:1.20.1250.20 13 431 1.2E-79 T 31-10-2018 BRM88_24580 cddea502b09cbd6273aa4139f635be3f 436 Pfam PF07690 Major Facilitator Superfamily 29 395 4.2E-43 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_16290 5a1bff7ee2b17891608a33ddbfc33c3a 625 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 624 4.0E-196 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_16290 5a1bff7ee2b17891608a33ddbfc33c3a 625 PIRSF PIRSF028304 1 625 6.2E-178 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_16290 5a1bff7ee2b17891608a33ddbfc33c3a 625 Pfam PF05947 Type VI secretion system, TssF 6 623 1.4E-214 T 31-10-2018 IPR010272 Type VI secretion system, TssF-like BRM88_05630 565d1bb4cff3505eb7bfdc2f3bea9664 349 SUPERFAMILY SSF53850 36 310 7.41E-40 T 31-10-2018 BRM88_05630 565d1bb4cff3505eb7bfdc2f3bea9664 349 Gene3D G3DSA:3.40.190.10 133 342 1.6E-120 T 31-10-2018 BRM88_05630 565d1bb4cff3505eb7bfdc2f3bea9664 349 Gene3D G3DSA:3.40.190.10 35 329 1.6E-120 T 31-10-2018 BRM88_05630 565d1bb4cff3505eb7bfdc2f3bea9664 349 Pfam PF13531 Bacterial extracellular solute-binding protein 46 294 2.3E-18 T 31-10-2018 BRM88_21540 9fec06faf7b3ba4ecf51233c9d804b58 363 Pfam PF07759 Protein of unknown function (DUF1615) 48 362 1.3E-136 T 31-10-2018 IPR011673 Protein of unknown function DUF1615 BRM88_21540 9fec06faf7b3ba4ecf51233c9d804b58 363 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 20 363 0.0 T 31-10-2018 IPR011673 Protein of unknown function DUF1615 BRM88_12510 cf9107a903981fc9a85f058ba69d8096 114 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 26 61 6.6E-9 T 31-10-2018 BRM88_12510 cf9107a903981fc9a85f058ba69d8096 114 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 25 73 3.5E-9 T 31-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM BRM88_12510 cf9107a903981fc9a85f058ba69d8096 114 SUPERFAMILY SSF143120 23 73 5.23E-9 T 31-10-2018 IPR036165 YefM-like superfamily BRM88_12510 cf9107a903981fc9a85f058ba69d8096 114 Gene3D G3DSA:3.40.1620.10 24 61 5.4E-7 T 31-10-2018 BRM88_18490 b45501fb058a994e8aac8620a071446e 148 SUPERFAMILY SSF116734 4 121 1.23E-21 T 31-10-2018 BRM88_18490 b45501fb058a994e8aac8620a071446e 148 Pfam PF01420 Type I restriction modification DNA specificity domain 7 88 3.9E-9 T 31-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 BRM88_18490 b45501fb058a994e8aac8620a071446e 148 Gene3D G3DSA:3.90.220.20 3 112 1.1E-19 T 31-10-2018 BRM88_14455 dce75bba57c8be89b6b5527050a5fe2b 116 Pfam PF13298 DNA polymerase Ligase (LigD) 35 69 1.2E-10 T 31-10-2018 IPR014144 DNA ligase D, 3'-phosphoesterase domain BRM88_04085 9130da40d0e46d680bdae6e6f353e0e1 439 Pfam PF13546 DDE superfamily endonuclease 18 291 2.5E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_04085 9130da40d0e46d680bdae6e6f353e0e1 439 SUPERFAMILY SSF53098 18 403 2.58E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04195 5a65b502e33c0e8ca5437ec7637f493c 368 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 8 365 9.0E-116 T 31-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 BRM88_04195 5a65b502e33c0e8ca5437ec7637f493c 368 Pfam PF03739 Predicted permease YjgP/YjgQ family 10 365 2.2E-71 T 31-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 BRM88_20990 e579c054efc188726285b28d06f3ee55 171 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 130 3.0E-28 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_20990 e579c054efc188726285b28d06f3ee55 171 Gene3D G3DSA:3.30.70.560 1 153 2.7E-34 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_20990 e579c054efc188726285b28d06f3ee55 171 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 130 2.0E-23 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_20990 e579c054efc188726285b28d06f3ee55 171 SUPERFAMILY SSF55083 1 151 1.12E-38 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_06260 342f2bc5a49316986bb377887e586063 484 Gene3D G3DSA:2.40.170.20 2 94 4.3E-9 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_06260 342f2bc5a49316986bb377887e586063 484 SUPERFAMILY SSF56935 6 484 3.14E-27 T 31-10-2018 BRM88_22700 d7325da5f0562e0e44637783f8f74f62 196 Hamap MF_01204 Probable malonic semialdehyde reductase RutE [rutE]. 2 196 46.946 T 31-10-2018 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE GO:0016491|GO:0055114 BRM88_22700 d7325da5f0562e0e44637783f8f74f62 196 SUPERFAMILY SSF55469 10 195 2.49E-43 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BRM88_22700 d7325da5f0562e0e44637783f8f74f62 196 Gene3D G3DSA:3.40.109.10 2 196 3.1E-31 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BRM88_22700 d7325da5f0562e0e44637783f8f74f62 196 Pfam PF00881 Nitroreductase family 16 158 9.6E-16 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 Pfam PF01341 Glycosyl hydrolases family 6 58 409 5.6E-99 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 SUPERFAMILY SSF51989 35 457 6.28E-116 T 31-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 118 131 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 219 232 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 363 383 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 386 400 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 152 167 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 323 336 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 64 83 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 PRINTS PR00733 Glycosyl hydrolase family 6 signature 259 269 8.5E-34 T 31-10-2018 IPR016288 1, 4-beta cellobiohydrolase GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 Gene3D G3DSA:3.20.20.40 34 457 1.9E-157 T 31-10-2018 IPR036434 1, 4-beta cellobiohydrolase superfamily GO:0004553|GO:0030245 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 SMART SM00060 478 556 0.0089 T 31-10-2018 IPR003961 Fibronectin type III GO:0005515 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 SUPERFAMILY SSF49265 467 563 1.93E-11 T 31-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 BRM88_21510 c6001392511fbaaf9f73cea0046506c2 566 Gene3D G3DSA:2.60.40.10 475 565 2.4E-19 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_02640 9ecb181890208a7d38ee720f47ab6915 69 Pfam PF04519 Polymer-forming cytoskeletal 1 36 3.0E-6 T 31-10-2018 IPR007607 Bactofilin A/B BRM88_17535 1606b36fdb8a553f13cdee8e8e293b58 135 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 33 111 1.4E-17 T 31-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BRM88_17535 1606b36fdb8a553f13cdee8e8e293b58 135 SUPERFAMILY SSF46767 30 112 3.27E-19 T 31-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BRM88_17535 1606b36fdb8a553f13cdee8e8e293b58 135 Gene3D G3DSA:1.10.10.10 27 135 3.6E-26 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_23100 cf27db0cc72070f334f12bc1cef314a5 365 SUPERFAMILY SSF51395 2 358 5.8E-109 T 31-10-2018 BRM88_23100 cf27db0cc72070f334f12bc1cef314a5 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 337 3.1E-64 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BRM88_23100 cf27db0cc72070f334f12bc1cef314a5 365 Gene3D G3DSA:3.20.20.70 1 353 5.4E-117 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_22260 c4817c23b6c18a14cdc118fd7a3f1596 458 Pfam PF01609 Transposase DDE domain 283 416 2.7E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_22260 c4817c23b6c18a14cdc118fd7a3f1596 458 Pfam PF05598 Transposase domain (DUF772) 59 133 2.8E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_20050 27abbda7b2d527ab2a7990e2edc8bfc3 212 Pfam PF04011 LemA family 9 192 1.4E-66 T 31-10-2018 IPR007156 LemA BRM88_20050 27abbda7b2d527ab2a7990e2edc8bfc3 212 SUPERFAMILY SSF140478 26 179 7.59E-54 T 31-10-2018 IPR023353 LemA-like domain superfamily BRM88_20050 27abbda7b2d527ab2a7990e2edc8bfc3 212 Gene3D G3DSA:1.20.1440.20 16 192 2.5E-63 T 31-10-2018 IPR023353 LemA-like domain superfamily BRM88_16980 0aae2a25b46a7881f545ab69eb06e3be 363 Pfam PF01757 Acyltransferase family 30 344 4.3E-26 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 SUPERFAMILY SSF158710 26 170 2.35E-46 T 31-10-2018 IPR023153 PSPTO4464-like domain superfamily BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 Pfam PF04751 Protein of unknown function (DUF615) 14 167 8.8E-50 T 31-10-2018 IPR006839 Ribosome-associated, YjgA BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 Gene3D G3DSA:1.10.60.30 24 98 6.8E-23 T 31-10-2018 BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 3 171 23.605 T 31-10-2018 IPR006839 Ribosome-associated, YjgA BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 PIRSF PIRSF016183 1 175 1.7E-68 T 31-10-2018 IPR006839 Ribosome-associated, YjgA BRM88_17640 a90721ab519332dd3d3b0f77b016dc30 193 Gene3D G3DSA:1.10.60.30 102 176 3.7E-30 T 31-10-2018 BRM88_20055 57ed609a3ac94b82a9dd138aa763b44f 126 Pfam PF01219 Prokaryotic diacylglycerol kinase 22 121 2.4E-33 T 31-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BRM88_20055 57ed609a3ac94b82a9dd138aa763b44f 126 Gene3D G3DSA:1.10.3830.10 8 125 2.9E-36 T 31-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BRM88_04410 e7a8ad2e8491c516a446c991d16f282a 321 SMART SM01126 137 282 1.4E-48 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_04410 e7a8ad2e8491c516a446c991d16f282a 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.2E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_04410 e7a8ad2e8491c516a446c991d16f282a 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_00465 313e2eb032c2961a8a84d13c967a054e 233 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 47 206 8.4E-38 T 31-10-2018 IPR012842 Type III secretion system HrpE/YscL BRM88_00465 313e2eb032c2961a8a84d13c967a054e 233 Pfam PF02108 Flagellar assembly protein FliH 116 213 3.4E-9 T 31-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BRM88_15985 751b17ef147ea9aa7baa61ef3f162b38 317 Gene3D G3DSA:2.115.10.20 154 307 2.6E-13 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_15985 751b17ef147ea9aa7baa61ef3f162b38 317 Gene3D G3DSA:2.115.10.20 2 153 4.5E-7 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_15985 751b17ef147ea9aa7baa61ef3f162b38 317 SUPERFAMILY SSF75005 68 302 2.26E-25 T 31-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BRM88_15920 9d7b760ac1c678292a9e8ea4dc86d4f3 404 Pfam PF14907 Uncharacterised nucleotidyltransferase 36 262 4.0E-30 T 31-10-2018 IPR039498 Uncharacterised nucleotidyltransferase BRM88_06735 6456ffb204209f296aa091e262032b3b 527 SUPERFAMILY SSF51445 51 412 8.95E-91 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_06735 6456ffb204209f296aa091e262032b3b 527 SUPERFAMILY SSF51011 393 526 2.81E-27 T 31-10-2018 BRM88_06735 6456ffb204209f296aa091e262032b3b 527 SMART SM00813 330 520 3.0E-86 T 31-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 BRM88_06735 6456ffb204209f296aa091e262032b3b 527 Gene3D G3DSA:3.20.20.80 52 412 1.3E-185 T 31-10-2018 BRM88_06735 6456ffb204209f296aa091e262032b3b 527 Pfam PF06964 Alpha-L-arabinofuranosidase C-terminal domain 330 520 6.9E-40 T 31-10-2018 IPR010720 Alpha-L-arabinofuranosidase, C-terminal GO:0046373|GO:0046556 KEGG: 00520+3.2.1.55 BRM88_06735 6456ffb204209f296aa091e262032b3b 527 Gene3D G3DSA:2.60.40.1180 49 524 1.3E-185 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_10340 a68113b7db15bc080b024c06739e20cf 256 Gene3D G3DSA:2.60.40.10 40 158 2.1E-9 T 31-10-2018 IPR013783 Immunoglobulin-like fold BRM88_10340 a68113b7db15bc080b024c06739e20cf 256 SUPERFAMILY SSF49354 35 157 9.16E-26 T 31-10-2018 IPR008962 PapD-like superfamily BRM88_10340 a68113b7db15bc080b024c06739e20cf 256 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 40 157 8.2E-24 T 31-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BRM88_10145 fb316cc2648291fbd389f06bd398c1e4 56 Pfam PF01583 Adenylylsulphate kinase 5 40 2.4E-11 T 31-10-2018 BRM88_10145 fb316cc2648291fbd389f06bd398c1e4 56 Gene3D G3DSA:3.40.50.300 2 56 3.6E-14 T 31-10-2018 BRM88_18830 e18466841be789a5be42b19c7436faa9 393 Gene3D G3DSA:3.20.80.10 291 379 3.6E-5 T 31-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BRM88_18830 e18466841be789a5be42b19c7436faa9 393 SUPERFAMILY SSF55961 26 181 1.24E-8 T 31-10-2018 BRM88_18830 e18466841be789a5be42b19c7436faa9 393 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 30 178 3.7E-6 T 31-10-2018 IPR019587 Polyketide cyclase/dehydrase BRM88_09025 b6826663ec66f42f7c8e464db7f2d861 504 Gene3D G3DSA:3.40.50.1820 67 375 5.2E-17 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09025 b6826663ec66f42f7c8e464db7f2d861 504 SUPERFAMILY SSF53474 203 373 1.17E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09025 b6826663ec66f42f7c8e464db7f2d861 504 PIRSF PIRSF014728 1 498 1.9E-240 T 31-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type BRM88_09025 b6826663ec66f42f7c8e464db7f2d861 504 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 49 421 4.8E-130 T 31-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type BRM88_12535 e3d20d3684e348601444affc77000903 161 Gene3D G3DSA:3.30.70.560 1 158 6.1E-52 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_12535 e3d20d3684e348601444affc77000903 161 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 135 4.2E-42 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_12535 e3d20d3684e348601444affc77000903 161 SUPERFAMILY SSF55083 1 149 4.45E-49 T 31-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_12535 e3d20d3684e348601444affc77000903 161 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 90 101 - T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_12535 e3d20d3684e348601444affc77000903 161 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 135 7.1E-34 T 31-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BRM88_18305 bc8dd6786ae17a69747e3a22a99c464b 465 Gene3D G3DSA:2.40.10.10 254 353 2.2E-45 T 31-10-2018 BRM88_18305 bc8dd6786ae17a69747e3a22a99c464b 465 Pfam PF13365 Trypsin-like peptidase domain 269 420 2.5E-6 T 31-10-2018 BRM88_18305 bc8dd6786ae17a69747e3a22a99c464b 465 Gene3D G3DSA:2.40.10.10 231 453 2.2E-45 T 31-10-2018 BRM88_18305 bc8dd6786ae17a69747e3a22a99c464b 465 SUPERFAMILY SSF50494 243 462 9.74E-37 T 31-10-2018 IPR009003 Peptidase S1, PA clan BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 Pfam PF02416 mttA/Hcf106 family 4 33 3.2E-5 T 31-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.3E-20 T 31-10-2018 BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.3E-20 T 31-10-2018 BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.3E-20 T 31-10-2018 BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 79 2.6E-26 T 31-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BRM88_23420 8bd9dc7b3574737635e2b85f9caf1cdc 211 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 163 18.918 T 31-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BRM88_10760 f1229fba9b83b93d52b4673ae875c251 78 Gene3D G3DSA:1.20.5.300 1 58 6.6E-34 T 31-10-2018 BRM88_10760 f1229fba9b83b93d52b4673ae875c251 78 Pfam PF04102 SlyX 12 78 5.7E-16 T 31-10-2018 IPR007236 SlyX BRM88_10760 f1229fba9b83b93d52b4673ae875c251 78 Hamap MF_00715 Protein SlyX [slyX]. 11 78 15.601 T 31-10-2018 IPR007236 SlyX BRM88_14745 19f91cfce9ea0aee6e1337b8b4eebc75 574 SUPERFAMILY SSF103473 27 503 4.84E-43 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_14745 19f91cfce9ea0aee6e1337b8b4eebc75 574 Gene3D G3DSA:1.20.1250.20 278 501 2.1E-14 T 31-10-2018 BRM88_14745 19f91cfce9ea0aee6e1337b8b4eebc75 574 Pfam PF07690 Major Facilitator Superfamily 42 455 1.4E-36 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_14745 19f91cfce9ea0aee6e1337b8b4eebc75 574 Gene3D G3DSA:1.20.1250.20 29 249 8.7E-15 T 31-10-2018 BRM88_06075 cdfa21999b76338481c840559866ec1d 204 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 3 204 1.4E-86 T 31-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 BRM88_06075 cdfa21999b76338481c840559866ec1d 204 SMART SM00382 22 203 9.6E-11 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_06075 cdfa21999b76338481c840559866ec1d 204 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_06075 cdfa21999b76338481c840559866ec1d 204 SUPERFAMILY SSF52540 12 204 2.6E-56 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06075 cdfa21999b76338481c840559866ec1d 204 Pfam PF00005 ABC transporter 23 157 2.2E-30 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_06075 cdfa21999b76338481c840559866ec1d 204 Gene3D G3DSA:3.40.50.300 5 204 3.3E-53 T 31-10-2018 BRM88_04120 5ecf543fbc6182c2af291e9358c4a6bd 346 Gene3D G3DSA:2.160.20.10 1 346 1.4E-111 T 31-10-2018 IPR012334 Pectin lyase fold BRM88_04120 5ecf543fbc6182c2af291e9358c4a6bd 346 Pfam PF00544 Pectate lyase 46 277 8.0E-54 T 31-10-2018 IPR002022 Pectate lyase BRM88_04120 5ecf543fbc6182c2af291e9358c4a6bd 346 SMART SM00656 20 283 1.2E-56 T 31-10-2018 IPR002022 Pectate lyase BRM88_04120 5ecf543fbc6182c2af291e9358c4a6bd 346 SUPERFAMILY SSF51126 4 345 6.76E-79 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_03265 f4bfa70e73d74a3b6d2b443f2930bf53 443 SMART SM00387 324 422 3.3E-4 T 31-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BRM88_03265 f4bfa70e73d74a3b6d2b443f2930bf53 443 Pfam PF06580 Histidine kinase 230 309 8.1E-20 T 31-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BRM88_03265 f4bfa70e73d74a3b6d2b443f2930bf53 443 Gene3D G3DSA:3.30.565.10 285 418 1.8E-17 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_03265 f4bfa70e73d74a3b6d2b443f2930bf53 443 SUPERFAMILY SSF55874 287 417 1.83E-17 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_11310 08d3d7063013321f36276ca059c8d416 278 SUPERFAMILY SSF161098 8 278 7.29E-73 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_11310 08d3d7063013321f36276ca059c8d416 278 Gene3D G3DSA:1.10.3720.10 4 269 2.8E-67 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_11310 08d3d7063013321f36276ca059c8d416 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 266 1.2E-21 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_21365 7707f033208efd32db2970ef1117eceb 350 SUPERFAMILY SSF55874 217 297 2.47E-6 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_21365 7707f033208efd32db2970ef1117eceb 350 Pfam PF06580 Histidine kinase 159 237 2.4E-20 T 31-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 Pfam PF03466 LysR substrate binding domain 92 289 2.7E-22 T 31-10-2018 IPR005119 LysR, substrate-binding BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 SUPERFAMILY SSF46785 4 88 9.98E-17 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 Gene3D G3DSA:3.40.190.10 167 266 1.1E-15 T 31-10-2018 BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 Gene3D G3DSA:3.40.190.10 106 275 1.1E-15 T 31-10-2018 BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 Gene3D G3DSA:1.10.10.10 2 89 8.7E-19 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.3E-17 T 31-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BRM88_15610 b48c5c230f3d1461f75e3703d55bf6ac 314 SUPERFAMILY SSF53850 90 290 1.35E-27 T 31-10-2018 BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 103 162 2.6E-6 T 31-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 Gene3D G3DSA:2.60.40.1180 32 404 4.3E-139 T 31-10-2018 IPR013780 Glycosyl hydrolase, all-beta BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 SUPERFAMILY SSF51445 40 314 1.15E-52 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 315 403 1.9E-12 T 31-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 SUPERFAMILY SSF51011 311 405 5.58E-25 T 31-10-2018 BRM88_19325 2b5c81e37e552ce75ab2185701a0a4da 406 Gene3D G3DSA:3.20.20.80 40 314 4.3E-139 T 31-10-2018 BRM88_08370 54009ca466f861c7f9755d27237dbfcc 154 Gene3D G3DSA:2.60.40.1890 40 153 1.6E-31 T 31-10-2018 IPR036182 Copper chaperone PCuAC superfamily BRM88_08370 54009ca466f861c7f9755d27237dbfcc 154 Pfam PF04314 Copper chaperone PCu(A)C 37 142 4.1E-29 T 31-10-2018 IPR007410 Copper chaperone PCuAC BRM88_08370 54009ca466f861c7f9755d27237dbfcc 154 SUPERFAMILY SSF110087 15 152 9.15E-36 T 31-10-2018 IPR036182 Copper chaperone PCuAC superfamily BRM88_04550 ee243982269aadc3f4283629494a5fdb 332 Gene3D G3DSA:3.90.245.10 30 330 6.8E-58 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_04550 ee243982269aadc3f4283629494a5fdb 332 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 41 321 2.9E-43 T 31-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BRM88_04550 ee243982269aadc3f4283629494a5fdb 332 SUPERFAMILY SSF53590 41 328 7.59E-53 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 Gene3D G3DSA:2.120.10.30 37 300 6.0E-62 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 162 184 1.8E-10 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 185 205 1.8E-10 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 264 282 1.8E-10 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 222 239 1.8E-10 T 31-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 SUPERFAMILY SSF63829 34 297 5.23E-60 T 31-10-2018 BRM88_19885 5f8f0aa944acbccce6ce8d9e02071a33 301 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 43 281 1.1E-44 T 31-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region BRM88_05565 aa04aa2c2cfc23cdb299d494ab6aeba5 420 Pfam PF08014 Domain of unknown function (DUF1704) 48 406 9.0E-121 T 31-10-2018 IPR012548 Protein of unknown function DUF1704 BRM88_05565 aa04aa2c2cfc23cdb299d494ab6aeba5 420 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 20 402 8.7E-125 T 31-10-2018 IPR012656 Conserved hypothetical protein CHP02421, QEGLA BRM88_05565 aa04aa2c2cfc23cdb299d494ab6aeba5 420 SMART SM01154 40 409 5.5E-150 T 31-10-2018 IPR012548 Protein of unknown function DUF1704 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 Gene3D G3DSA:2.40.30.20 102 199 5.2E-33 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 SUPERFAMILY SSF63380 1 93 5.19E-24 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 Pfam PF00677 Lumazine binding domain 100 184 2.2E-24 T 31-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 Pfam PF00677 Lumazine binding domain 3 87 3.8E-20 T 31-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 194 4.9E-59 T 31-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 Gene3D G3DSA:2.40.30.20 1 89 2.3E-26 T 31-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 SUPERFAMILY SSF63380 93 195 1.53E-31 T 31-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BRM88_20555 b8fc469c4425aa052f3fc4db144d74a8 200 PIRSF PIRSF000498 1 199 1.0E-72 T 31-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BRM88_15090 214c1d292b36bff8ce2af90f4eb45e9b 340 Gene3D G3DSA:2.30.30.40 210 333 3.2E-29 T 31-10-2018 BRM88_15090 214c1d292b36bff8ce2af90f4eb45e9b 340 Pfam PF01584 CheW-like domain 207 339 1.4E-29 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15090 214c1d292b36bff8ce2af90f4eb45e9b 340 SMART SM00260 201 339 1.5E-20 T 31-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BRM88_15090 214c1d292b36bff8ce2af90f4eb45e9b 340 Gene3D G3DSA:2.40.50.180 224 334 3.2E-29 T 31-10-2018 BRM88_15090 214c1d292b36bff8ce2af90f4eb45e9b 340 SUPERFAMILY SSF50341 203 340 3.4E-30 T 31-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BRM88_04300 2cb64c57e9f7d135106d79e5478e81ab 269 ProDom PD046566 PATHWAY N GENERAL SECRETION PRECURSOR SIGNAL MEMBRANE XPSN TRANSMEMBRANE INNER 1 165 6.0E-90 T 31-10-2018 BRM88_08445 5deb589f2ca78d1b867d188b37bb4b9c 208 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 29 208 4.5E-82 T 31-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 BRM88_08445 5deb589f2ca78d1b867d188b37bb4b9c 208 SUPERFAMILY SSF81452 15 206 1.31E-56 T 31-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08445 5deb589f2ca78d1b867d188b37bb4b9c 208 Pfam PF00510 Cytochrome c oxidase subunit III 30 206 2.0E-13 T 31-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_08445 5deb589f2ca78d1b867d188b37bb4b9c 208 Gene3D G3DSA:1.20.120.80 23 208 1.0E-57 T 31-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_06225 bf4bf5d5bd3e08b039a7601a96d69d13 141 Gene3D G3DSA:1.10.760.10 25 141 4.2E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_06225 bf4bf5d5bd3e08b039a7601a96d69d13 141 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 46 119 1.2E-11 T 31-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_06225 bf4bf5d5bd3e08b039a7601a96d69d13 141 SUPERFAMILY SSF46626 1 129 1.48E-19 T 31-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 Gene3D G3DSA:3.40.50.720 1 252 4.2E-70 T 31-10-2018 BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 250 3.4E-47 T 31-10-2018 BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.5E-30 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 31-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 6.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 6.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 6.0E-9 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 SUPERFAMILY SSF51735 2 251 1.33E-68 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_11540 e30591aa55d961e06b594b545d249ee6 252 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 2 252 7.0E-109 T 31-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 BRM88_07170 e925a5cd6ae072fa6fd968988e872660 179 SUPERFAMILY SSF55729 1 155 9.62E-27 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_07170 e925a5cd6ae072fa6fd968988e872660 179 Gene3D G3DSA:3.40.630.30 2 159 1.0E-24 T 31-10-2018 BRM88_07170 e925a5cd6ae072fa6fd968988e872660 179 Pfam PF13673 Acetyltransferase (GNAT) domain 45 145 6.9E-13 T 31-10-2018 IPR000182 GNAT domain BRM88_01505 169e6cae9ede1fb8bb49ab5a5968776c 183 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 7 150 1.5E-48 T 31-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 BRM88_01505 169e6cae9ede1fb8bb49ab5a5968776c 183 Pfam PF02470 MlaD protein 41 119 3.5E-20 T 31-10-2018 IPR003399 Mce/MlaD BRM88_12395 f777e880b7efa2b1a7b06939254978c6 79 Gene3D G3DSA:1.10.10.10 30 62 2.7E-6 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_12395 f777e880b7efa2b1a7b06939254978c6 79 Pfam PF08279 HTH domain 31 57 1.1E-4 T 31-10-2018 IPR013196 Helix-turn-helix, type 11 BRM88_16885 a4c44ed2f6a60a01cdc464e7b1bb7986 106 Gene3D G3DSA:1.10.10.10 48 99 5.0E-6 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_16885 a4c44ed2f6a60a01cdc464e7b1bb7986 106 Pfam PF04703 FaeA-like protein 55 91 2.9E-4 T 31-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 BRM88_01860 918321052a1bf4e4e44a9c8ccd8a2488 66 Gene3D G3DSA:1.10.260.40 1 64 1.7E-25 T 31-10-2018 BRM88_01860 918321052a1bf4e4e44a9c8ccd8a2488 66 SMART SM00530 4 59 1.2E-18 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_01860 918321052a1bf4e4e44a9c8ccd8a2488 66 Pfam PF01381 Helix-turn-helix 5 57 6.7E-17 T 31-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BRM88_01860 918321052a1bf4e4e44a9c8ccd8a2488 66 SUPERFAMILY SSF47413 3 64 4.02E-18 T 31-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BRM88_02675 a072fd41aea497c16cd8021194a2b57c 126 Pfam PF04505 Interferon-induced transmembrane protein 23 98 1.2E-11 T 31-10-2018 IPR007593 CD225/Dispanin family GO:0016021 BRM88_12685 009551f7590fe0dc34ed134fab0f999d 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 91 5.3E-44 T 31-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein BRM88_12685 009551f7590fe0dc34ed134fab0f999d 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 1.8E-29 T 31-10-2018 IPR013433 Putative polyhydroxyalkanoic acid system protein BRM88_08540 65da4c4559a795756c50337fc8214e2c 518 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 80 242 2.2E-8 T 31-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BRM88_20410 492e87ba2c8f899d9cdee40d01cdf197 457 Pfam PF01098 Cell cycle protein 24 373 5.0E-99 T 31-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20410 492e87ba2c8f899d9cdee40d01cdf197 457 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 19 372 6.2E-126 T 31-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_20410 492e87ba2c8f899d9cdee40d01cdf197 457 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 17 381 39.365 T 31-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BRM88_22185 437e756c12da2da7af9df9362ba133f3 104 SUPERFAMILY SSF103481 4 102 3.53E-19 T 31-10-2018 BRM88_22185 437e756c12da2da7af9df9362ba133f3 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 2.0E-28 T 31-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BRM88_22185 437e756c12da2da7af9df9362ba133f3 104 Gene3D G3DSA:1.10.3730.20 1 104 1.1E-32 T 31-10-2018 BRM88_07905 db7d89a4164328ca2c44d0cb3a853fb0 136 Gene3D G3DSA:3.40.50.720 2 124 2.6E-19 T 31-10-2018 BRM88_07905 db7d89a4164328ca2c44d0cb3a853fb0 136 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 52 71 5.1E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_07905 db7d89a4164328ca2c44d0cb3a853fb0 136 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 90 5.1E-7 T 31-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BRM88_07905 db7d89a4164328ca2c44d0cb3a853fb0 136 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 38 114 2.8E-10 T 31-10-2018 BRM88_07905 db7d89a4164328ca2c44d0cb3a853fb0 136 SUPERFAMILY SSF51735 25 122 4.35E-20 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_14430 7b5d968641bcf00d4e684051a6156b8e 611 Gene3D G3DSA:3.90.1580.10 330 610 1.3E-68 T 31-10-2018 BRM88_14430 7b5d968641bcf00d4e684051a6156b8e 611 Pfam PF03781 Sulfatase-modifying factor enzyme 1 336 609 1.4E-65 T 31-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 BRM88_14430 7b5d968641bcf00d4e684051a6156b8e 611 SUPERFAMILY SSF56436 335 610 3.77E-64 T 31-10-2018 IPR016187 C-type lectin fold BRM88_00990 05050f13683537c7fbff278b66b9d099 439 Pfam PF13546 DDE superfamily endonuclease 18 291 5.8E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_00990 05050f13683537c7fbff278b66b9d099 439 SUPERFAMILY SSF53098 18 403 5.31E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14115 d3944ed6e0e46c69a2de2c681df11c42 416 SUPERFAMILY SSF103473 22 414 5.75E-37 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_14115 d3944ed6e0e46c69a2de2c681df11c42 416 Pfam PF05977 Transmembrane secretion effector 20 411 5.1E-33 T 31-10-2018 IPR010290 Transmembrane secretion effector BRM88_14115 d3944ed6e0e46c69a2de2c681df11c42 416 Gene3D G3DSA:1.20.1250.20 20 403 8.9E-32 T 31-10-2018 BRM88_07830 f29a31d61150e247996c830e04acf3a3 142 Pfam PF01322 Cytochrome C' 88 142 9.2E-5 T 31-10-2018 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 BRM88_07830 f29a31d61150e247996c830e04acf3a3 142 SUPERFAMILY SSF47175 31 142 2.65E-16 T 31-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 BRM88_07830 f29a31d61150e247996c830e04acf3a3 142 Gene3D G3DSA:1.20.120.10 6 142 2.8E-6 T 31-10-2018 BRM88_08475 51df495048c875863cd3199b9c376f5e 198 Pfam PF14435 SUKH-4 immunity protein 24 192 9.9E-8 T 31-10-2018 IPR025851 SUKH-4 immunity protein BRM88_16750 0a63fd5940979051c09f4a3e276cf0c9 621 Pfam PF05960 Bacterial protein of unknown function (DUF885) 75 591 2.1E-150 T 31-10-2018 IPR010281 Protein of unknown function DUF885 BRM88_02005 d3afee190310b36edd67bcaee60da190 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_02005 d3afee190310b36edd67bcaee60da190 321 SMART SM01126 137 282 6.6E-44 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_02005 d3afee190310b36edd67bcaee60da190 321 Pfam PF12762 ISXO2-like transposase domain 137 282 3.5E-27 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_13450 55ac931d7ef16f19f65a0e9cca02a787 106 Gene3D G3DSA:3.30.1390.10 1 106 1.2E-42 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BRM88_13450 55ac931d7ef16f19f65a0e9cca02a787 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 4 101 28.651 T 31-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS BRM88_13450 55ac931d7ef16f19f65a0e9cca02a787 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 24 102 4.5E-34 T 31-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 BRM88_13450 55ac931d7ef16f19f65a0e9cca02a787 106 SUPERFAMILY SSF54736 21 105 2.14E-32 T 31-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BRM88_15535 1359a8afdabd565ccaf2a3ce058949a2 292 Gene3D G3DSA:3.30.420.300 1 69 3.8E-18 T 31-10-2018 BRM88_15535 1359a8afdabd565ccaf2a3ce058949a2 292 Pfam PF05035 2-keto-3-deoxy-galactonokinase 5 284 7.3E-94 T 31-10-2018 IPR007729 2-keto-3-deoxy-galactonokinase GO:0008671|GO:0034194 KEGG: 00052+2.7.1.58|MetaCyc: PWY-7130 BRM88_15535 1359a8afdabd565ccaf2a3ce058949a2 292 Gene3D G3DSA:3.30.420.310 70 291 5.0E-73 T 31-10-2018 BRM88_08190 d807bfe951d59ca25676dc758931fffb 529 Pfam PF00884 Sulfatase 207 496 1.3E-31 T 31-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BRM88_08190 d807bfe951d59ca25676dc758931fffb 529 SUPERFAMILY SSF53649 207 509 2.05E-17 T 31-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BRM88_08190 d807bfe951d59ca25676dc758931fffb 529 Gene3D G3DSA:3.40.720.10 202 513 9.9E-62 T 31-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BRM88_20980 7fd987d751f63e9334c4d34e48f26c58 394 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 83 322 7.8E-45 T 31-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 BRM88_20980 7fd987d751f63e9334c4d34e48f26c58 394 SUPERFAMILY SSF53335 21 379 6.31E-86 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_20980 7fd987d751f63e9334c4d34e48f26c58 394 Gene3D G3DSA:3.40.50.12710 4 394 4.0E-113 T 31-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 BRM88_14005 e48b0905fa8a6b95e9b3612e8565989c 87 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 2 72 8.9E-18 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BRM88_08325 66b33c2d6f617fbca984e157c63b33e3 443 SUPERFAMILY SSF56219 72 440 3.89E-20 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_08325 66b33c2d6f617fbca984e157c63b33e3 443 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 76 433 4.8E-27 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BRM88_08325 66b33c2d6f617fbca984e157c63b33e3 443 Gene3D G3DSA:3.60.10.10 71 442 9.3E-20 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 Gene3D G3DSA:3.40.50.12780 3 388 7.0E-94 T 31-10-2018 BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 ProSitePatterns PS00455 Putative AMP-binding domain signature. 146 157 - T 31-10-2018 IPR020845 AMP-binding, conserved site BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 Pfam PF00501 AMP-binding enzyme 28 395 1.1E-82 T 31-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 Pfam PF13193 AMP-binding enzyme C-terminal domain 404 478 8.9E-19 T 31-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 Gene3D G3DSA:3.30.300.310 391 491 1.5E-32 T 31-10-2018 BRM88_19915 d666a8a19ecf8e306e3c138c390385f4 492 SUPERFAMILY SSF56801 6 489 6.54E-132 T 31-10-2018 BRM88_16120 4927cb81345890f6aee0a416207c57b9 491 Pfam PF05598 Transposase domain (DUF772) 75 149 1.1E-13 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 173 316 1.1E-61 T 31-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 8 166 1.7E-69 T 31-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 PIRSF PIRSF000116 3 199 8.4E-40 T 31-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 PIRSF PIRSF000116 192 319 4.7E-13 T 31-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 Gene3D G3DSA:3.40.50.720 3 171 3.3E-68 T 31-10-2018 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 8 316 2.8E-126 T 31-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 SUPERFAMILY SSF48179 173 321 2.04E-66 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 Gene3D G3DSA:1.10.3730.40 172 325 3.7E-68 T 31-10-2018 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 318 41.61 T 31-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BRM88_04780 223a867f4dbcc3e12395f95b5eb178da 333 SUPERFAMILY SSF51735 7 172 2.69E-63 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_16870 eb973bb71e4c87d9ba8465ce8d7ee06b 307 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 41 269 1.1E-39 T 31-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system BRM88_11810 1f25dadd18e0b776c15a54ed39e11302 33 SUPERFAMILY SSF103642 11 31 4.41E-9 T 31-10-2018 BRM88_11810 1f25dadd18e0b776c15a54ed39e11302 33 Pfam PF02810 SEC-C motif 13 29 8.8E-10 T 31-10-2018 IPR004027 SEC-C motif BRM88_11810 1f25dadd18e0b776c15a54ed39e11302 33 Gene3D G3DSA:3.10.450.50 1 33 4.6E-9 T 31-10-2018 BRM88_16265 d8e1ed9980e353ff3b647b734be18898 152 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 84 120 - T 31-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BRM88_16265 d8e1ed9980e353ff3b647b734be18898 152 SUPERFAMILY SSF53927 79 136 3.85E-6 T 31-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BRM88_16265 d8e1ed9980e353ff3b647b734be18898 152 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 74 123 2.8E-6 T 31-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BRM88_20890 a5aabc7ad20840654c329873c256fb62 417 Gene3D G3DSA:3.90.550.10 36 265 7.2E-41 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_20890 a5aabc7ad20840654c329873c256fb62 417 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 10 415 2.4E-194 T 31-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 BRM88_20890 a5aabc7ad20840654c329873c256fb62 417 SUPERFAMILY SSF53448 41 317 9.85E-60 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_20890 a5aabc7ad20840654c329873c256fb62 417 Pfam PF13641 Glycosyltransferase like family 2 54 275 4.6E-32 T 31-10-2018 BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 PRINTS PR00709 Avidin signature 53 61 6.7E-7 T 31-10-2018 IPR005469 Avidin BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 PRINTS PR00709 Avidin signature 120 131 6.7E-7 T 31-10-2018 IPR005469 Avidin BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 PRINTS PR00709 Avidin signature 32 46 6.7E-7 T 31-10-2018 IPR005469 Avidin BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 PRINTS PR00709 Avidin signature 103 113 6.7E-7 T 31-10-2018 IPR005469 Avidin BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 Gene3D G3DSA:2.40.128.30 25 148 2.5E-32 T 31-10-2018 IPR036896 Avidin-like superfamily BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 SUPERFAMILY SSF50876 32 147 1.36E-33 T 31-10-2018 IPR036896 Avidin-like superfamily BRM88_21475 b4189831936fd020b86c6197073c3e1e 148 Pfam PF01382 Avidin family 32 145 2.3E-28 T 31-10-2018 IPR005468 Avidin/streptavidin BRM88_06455 eba6b2197b0f4056840f5889270043b5 505 Pfam PF04820 Tryptophan halogenase 8 457 8.5E-193 T 31-10-2018 IPR006905 Flavin-dependent halogenase BRM88_06455 eba6b2197b0f4056840f5889270043b5 505 Gene3D G3DSA:3.50.50.60 2 491 3.9E-175 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_06455 eba6b2197b0f4056840f5889270043b5 505 SUPERFAMILY SSF51905 7 403 4.89E-28 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_06455 eba6b2197b0f4056840f5889270043b5 505 PIRSF PIRSF011396 1 494 1.6E-184 T 31-10-2018 IPR033856 Flavin-dependent tryptophan halogenase BRM88_24425 8a5cf3566edeb9d6ab6f6916c78fa44a 232 Pfam PF13835 Domain of unknown function (DUF4194) 50 208 2.2E-44 T 31-10-2018 IPR025449 Protein of unknown function DUF4194 BRM88_10485 e9a76bb45e11125b86475119aafb30f5 330 Gene3D G3DSA:3.40.50.2000 1 155 2.8E-12 T 31-10-2018 BRM88_10485 e9a76bb45e11125b86475119aafb30f5 330 SUPERFAMILY SSF53756 5 321 1.33E-46 T 31-10-2018 BRM88_10485 e9a76bb45e11125b86475119aafb30f5 330 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 211 298 1.4E-10 T 31-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 BRM88_10485 e9a76bb45e11125b86475119aafb30f5 330 Gene3D G3DSA:3.40.50.2000 156 308 1.3E-22 T 31-10-2018 BRM88_17570 23dd5874b505aedf4f152b12e3f9ed17 178 Gene3D G3DSA:3.90.1720.10 26 171 1.5E-39 T 31-10-2018 BRM88_17570 23dd5874b505aedf4f152b12e3f9ed17 178 SUPERFAMILY SSF54001 47 177 8.5E-38 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_17570 23dd5874b505aedf4f152b12e3f9ed17 178 Pfam PF00877 NlpC/P60 family 70 173 6.5E-26 T 31-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BRM88_09100 55fbfa823288cdeca913657218dfda7e 304 SUPERFAMILY SSF101478 7 299 9.29E-72 T 31-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily BRM88_09100 55fbfa823288cdeca913657218dfda7e 304 Gene3D G3DSA:1.10.4080.10 3 304 9.5E-94 T 31-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily BRM88_09100 55fbfa823288cdeca913657218dfda7e 304 Pfam PF03747 ADP-ribosylglycohydrolase 12 278 1.3E-61 T 31-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 BRM88_02295 7a13eed8559a600d9f3002e055d7399d 257 SUPERFAMILY SSF53901 6 183 4.66E-10 T 31-10-2018 IPR016039 Thiolase-like GO:0003824 BRM88_02295 7a13eed8559a600d9f3002e055d7399d 257 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 31 167 1.8E-22 T 31-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BRM88_13735 32f4008ee6b7089658f55ea8482f33b0 138 Pfam PF04347 Flagellar biosynthesis protein, FliO 50 134 2.1E-24 T 31-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 BRM88_13735 32f4008ee6b7089658f55ea8482f33b0 138 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 38 105 2.4E-23 T 31-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 BRM88_15100 db55198561e1532a6010cd7c057e8e09 121 SMART SM00448 3 116 1.2E-36 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_15100 db55198561e1532a6010cd7c057e8e09 121 Gene3D G3DSA:3.40.50.12740 1 121 2.9E-38 T 31-10-2018 BRM88_15100 db55198561e1532a6010cd7c057e8e09 121 SUPERFAMILY SSF52172 3 121 3.13E-36 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_15100 db55198561e1532a6010cd7c057e8e09 121 Pfam PF00072 Response regulator receiver domain 5 116 1.5E-27 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_00380 8d2e8a617cacbeb501bd55bca38540f9 454 Gene3D G3DSA:3.20.20.70 149 295 2.6E-8 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_00380 8d2e8a617cacbeb501bd55bca38540f9 454 SUPERFAMILY SSF51445 94 386 7.03E-26 T 31-10-2018 IPR017853 Glycoside hydrolase superfamily BRM88_00380 8d2e8a617cacbeb501bd55bca38540f9 454 Pfam PF02638 Glycosyl hydrolase-like 10 68 403 2.2E-88 T 31-10-2018 IPR003790 Glycosyl hydrolase-like 10 BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 324 355 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 902 933 6.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 460 491 1.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 732 763 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 392 423 3.8E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 868 899 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 290 321 6.2E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 1040 1064 0.049 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 528 559 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 834 865 2.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 358 389 9.9E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 1004 1035 9.7E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 664 695 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 698 729 2.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 630 661 4.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 766 797 4.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 800 831 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 562 593 9.9E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 970 1001 5.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 494 525 3.7E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 936 967 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 426 457 3.8E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_22645 70e22daa471d81a0213e816a7d3f939e 1309 Pfam PF03377 TAL effector repeat 596 627 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_10785 d0a021b7f290a8249c19634470c8de78 352 SUPERFAMILY SSF53613 29 347 4.68E-77 T 31-10-2018 IPR029056 Ribokinase-like BRM88_10785 d0a021b7f290a8249c19634470c8de78 352 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 61 85 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_10785 d0a021b7f290a8249c19634470c8de78 352 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 281 294 - T 31-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BRM88_10785 d0a021b7f290a8249c19634470c8de78 352 Gene3D G3DSA:3.40.1190.20 26 352 7.4E-120 T 31-10-2018 IPR029056 Ribokinase-like BRM88_10785 d0a021b7f290a8249c19634470c8de78 352 Pfam PF00294 pfkB family carbohydrate kinase 30 339 7.6E-65 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB BRM88_12575 326ff809b8760aa4ca3ceaed0af30104 458 Pfam PF01609 Transposase DDE domain 284 416 1.3E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_12575 326ff809b8760aa4ca3ceaed0af30104 458 Pfam PF05598 Transposase domain (DUF772) 59 132 5.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_24355 32d6ae5d6bd5e23a08b5b8aec5fe550b 230 Gene3D G3DSA:1.20.1540.10 14 225 5.7E-27 T 31-10-2018 IPR035952 Rhomboid-like superfamily BRM88_24355 32d6ae5d6bd5e23a08b5b8aec5fe550b 230 SUPERFAMILY SSF144091 15 215 1.03E-32 T 31-10-2018 BRM88_24355 32d6ae5d6bd5e23a08b5b8aec5fe550b 230 Pfam PF01694 Rhomboid family 64 217 1.0E-34 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BRM88_11590 62269469c9a0eb019c01b41638dce7fa 352 Gene3D G3DSA:3.30.420.470 146 343 2.9E-8 T 31-10-2018 BRM88_11590 62269469c9a0eb019c01b41638dce7fa 352 Pfam PF13358 DDE superfamily endonuclease 180 317 1.3E-29 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_11590 62269469c9a0eb019c01b41638dce7fa 352 Pfam PF13592 Winged helix-turn helix 105 162 3.3E-17 T 31-10-2018 IPR025959 Winged helix-turn helix domain BRM88_11590 62269469c9a0eb019c01b41638dce7fa 352 Pfam PF13551 Winged helix-turn helix 27 86 1.2E-14 T 31-10-2018 BRM88_11590 62269469c9a0eb019c01b41638dce7fa 352 SUPERFAMILY SSF46689 20 138 9.68E-16 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_20700 433dc123515c394fec55727ae59b9064 454 Gene3D G3DSA:3.30.590.20 3 454 4.6E-180 T 31-10-2018 BRM88_20700 433dc123515c394fec55727ae59b9064 454 PIRSF PIRSF017901 2 454 1.7E-185 T 31-10-2018 IPR035434 Glutamate--cysteine ligase, bacteria and plant GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BRM88_20700 433dc123515c394fec55727ae59b9064 454 SUPERFAMILY SSF55931 26 452 5.2E-70 T 31-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BRM88_20700 433dc123515c394fec55727ae59b9064 454 TIGRFAM TIGR01436 glu_cys_lig_pln: glutamate--cysteine ligase 11 454 3.2E-211 T 31-10-2018 IPR011556 Glutamate--cysteine ligase, plant-type GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BRM88_20700 433dc123515c394fec55727ae59b9064 454 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 54 357 2.4E-95 T 31-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BRM88_10370 8fcf67c2c141a699572771d51a1b8381 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 112 3.9E-28 T 31-10-2018 IPR006504 Transcriptional regulator Spx/MgsR BRM88_10370 8fcf67c2c141a699572771d51a1b8381 118 Gene3D G3DSA:3.40.30.10 1 115 1.5E-34 T 31-10-2018 BRM88_10370 8fcf67c2c141a699572771d51a1b8381 118 Pfam PF03960 ArsC family 18 112 4.4E-14 T 31-10-2018 IPR006660 Arsenate reductase-like BRM88_10370 8fcf67c2c141a699572771d51a1b8381 118 SUPERFAMILY SSF52833 1 114 2.71E-29 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_11240 856a7998cb5a2b07ec312e1755235b19 267 SUPERFAMILY SSF56317 1 260 1.57E-57 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_11240 856a7998cb5a2b07ec312e1755235b19 267 Gene3D G3DSA:3.60.110.10 1 266 7.6E-99 T 31-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BRM88_11240 856a7998cb5a2b07ec312e1755235b19 267 Pfam PF00795 Carbon-nitrogen hydrolase 32 244 1.0E-27 T 31-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BRM88_17095 bf0e510319b67ac109d7dfdbeeb88296 1327 Pfam PF05567 Neisseria PilC beta-propeller domain 774 1152 1.0E-31 T 31-10-2018 IPR008707 PilC beta-propeller domain BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 563 620 1.1E-12 T 31-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 SUPERFAMILY SSF64518 433 621 4.32E-27 T 31-10-2018 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 346 6.0E-68 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 403 420 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 PRINTS PR01005 Flagellar hook-associated protein signature 353 375 2.0E-19 T 31-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 Pfam PF00460 Flagella basal body rod protein 4 33 7.2E-9 T 31-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BRM88_13575 6011d791a3f1e153232e06eaa092cbe3 624 SUPERFAMILY SSF64518 131 439 1.14E-24 T 31-10-2018 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 PRINTS PR01021 OMPA domain signature 99 114 6.6E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 PRINTS PR01021 OMPA domain signature 69 91 6.6E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 PRINTS PR01021 OMPA domain signature 114 130 6.6E-13 T 31-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 3 169 29.673 T 31-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 Gene3D G3DSA:3.30.1330.60 55 171 3.3E-34 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 67 169 1.2E-42 T 31-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 SUPERFAMILY SSF103088 65 169 1.02E-31 T 31-10-2018 IPR036737 OmpA-like domain superfamily BRM88_08630 92f6ac9130adb9272da1c079fdf74e03 172 Pfam PF00691 OmpA family 68 163 1.6E-16 T 31-10-2018 IPR006665 OmpA-like domain BRM88_03320 f8656b0027bf01ebb26f407d068bae6a 189 Gene3D G3DSA:3.40.50.360 1 189 2.0E-57 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_03320 f8656b0027bf01ebb26f407d068bae6a 189 SUPERFAMILY SSF52218 1 188 1.57E-46 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_03320 f8656b0027bf01ebb26f407d068bae6a 189 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 31-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 BRM88_03320 f8656b0027bf01ebb26f407d068bae6a 189 Pfam PF03358 NADPH-dependent FMN reductase 45 112 4.6E-9 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BRM88_20235 ec23ce26a7d0cab2342ea14bdc7ff07c 439 Pfam PF13546 DDE superfamily endonuclease 19 291 5.2E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_20235 ec23ce26a7d0cab2342ea14bdc7ff07c 439 SUPERFAMILY SSF53098 21 403 1.21E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_24405 ec23ce26a7d0cab2342ea14bdc7ff07c 439 Pfam PF13546 DDE superfamily endonuclease 19 291 5.2E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_24405 ec23ce26a7d0cab2342ea14bdc7ff07c 439 SUPERFAMILY SSF53098 21 403 1.21E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_23340 ae010f63cfe19a3c6a351e9a0fe07cdb 220 Gene3D G3DSA:3.40.50.1820 1 220 1.0E-67 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_23340 ae010f63cfe19a3c6a351e9a0fe07cdb 220 Pfam PF12146 Serine aminopeptidase, S33 50 143 2.2E-6 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 BRM88_23340 ae010f63cfe19a3c6a351e9a0fe07cdb 220 SUPERFAMILY SSF53474 12 216 5.36E-47 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_04295 343f0e9b2ae3133215e0cca89dc3567c 217 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 76 190 3.5E-31 T 31-10-2018 IPR034756 Type II secretion system (T2SS), protein M subtype b BRM88_04770 c657be4493a47bb981fcb3ff181d8cff 85 Pfam PF13710 ACT domain 12 73 4.9E-19 T 31-10-2018 BRM88_04770 c657be4493a47bb981fcb3ff181d8cff 85 SUPERFAMILY SSF55021 1 75 2.75E-5 T 31-10-2018 BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 Gene3D G3DSA:3.40.50.790 67 159 1.7E-75 T 31-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 Pfam PF00687 Ribosomal protein L1p/L10e family 29 220 8.4E-46 T 31-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 Gene3D G3DSA:3.30.190.20 20 225 1.7E-75 T 31-10-2018 BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 31-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 40.395 T 31-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 5.4E-100 T 31-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 SUPERFAMILY SSF56808 5 225 1.7E-74 T 31-10-2018 IPR023674 Ribosomal protein L1-like BRM88_19175 23525c3a52e71b7aacd6d8fa858af2d7 232 PIRSF PIRSF002155 1 227 1.0E-70 T 31-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BRM88_11150 1af30d34a2a6eb42e8d06394f495e8ab 476 Gene3D G3DSA:1.20.1740.10 23 474 4.1E-121 T 31-10-2018 BRM88_11150 1af30d34a2a6eb42e8d06394f495e8ab 476 PIRSF PIRSF006060 10 476 3.6E-94 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_11150 1af30d34a2a6eb42e8d06394f495e8ab 476 Pfam PF13520 Amino acid permease 27 441 1.4E-60 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_03595 9208f0264d9e0fc0e5ae149a32ad3964 252 Pfam PF11101 Protein of unknown function (DUF2884) 31 244 5.1E-34 T 31-10-2018 IPR021307 Protein of unknown function DUF2884 BRM88_07735 e59ccee80893e9af4985a58e47da5a7d 387 Pfam PF05598 Transposase domain (DUF772) 57 131 6.7E-20 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_07735 e59ccee80893e9af4985a58e47da5a7d 387 Pfam PF01609 Transposase DDE domain 143 318 4.3E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_00170 9805c6e0977d98d1dba14ec6daadd58f 458 Pfam PF01609 Transposase DDE domain 285 416 9.5E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_00170 9805c6e0977d98d1dba14ec6daadd58f 458 Pfam PF05598 Transposase domain (DUF772) 59 133 2.4E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13330 79fd16ffc34c7b4214ad0adff29a3646 212 Pfam PF09976 Tetratricopeptide repeat-like domain 17 202 8.0E-39 T 31-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 BRM88_13330 79fd16ffc34c7b4214ad0adff29a3646 212 Gene3D G3DSA:1.25.40.10 46 191 3.0E-9 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_13330 79fd16ffc34c7b4214ad0adff29a3646 212 SUPERFAMILY SSF48452 94 183 1.38E-8 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_15605 88cfbd08bbf0c3fadbbf74a5f3847b16 328 Pfam PF09335 SNARE associated Golgi protein 27 157 4.5E-13 T 31-10-2018 IPR032816 SNARE associated Golgi protein BRM88_15605 88cfbd08bbf0c3fadbbf74a5f3847b16 328 SUPERFAMILY SSF52821 206 312 6.81E-21 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_15605 88cfbd08bbf0c3fadbbf74a5f3847b16 328 Gene3D G3DSA:3.40.250.10 204 313 2.7E-16 T 31-10-2018 IPR036873 Rhodanese-like domain superfamily BRM88_15605 88cfbd08bbf0c3fadbbf74a5f3847b16 328 Pfam PF00581 Rhodanese-like domain 223 304 2.0E-5 T 31-10-2018 IPR001763 Rhodanese-like domain BRM88_19985 43ebd8d965dce936cd3dd1365ee41d83 813 Pfam PF04453 Organic solvent tolerance protein 296 710 5.1E-102 T 31-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 BRM88_19985 43ebd8d965dce936cd3dd1365ee41d83 813 Pfam PF03968 OstA-like protein 62 191 1.0E-6 T 31-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal BRM88_19985 43ebd8d965dce936cd3dd1365ee41d83 813 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 7 771 20.072 T 31-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 BRM88_20825 b848a7abd2dab7273853887ae682f209 320 Pfam PF12762 ISXO2-like transposase domain 138 285 1.3E-30 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_20825 b848a7abd2dab7273853887ae682f209 320 Pfam PF12760 Transposase zinc-ribbon domain 23 69 4.2E-10 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_20825 b848a7abd2dab7273853887ae682f209 320 SMART SM01126 137 285 3.4E-45 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_19695 0c18f185b6110e9803382bb7bd17d0c9 317 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 35 308 1.1E-118 T 31-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 BRM88_19695 0c18f185b6110e9803382bb7bd17d0c9 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 304 1.2E-15 T 31-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BRM88_19695 0c18f185b6110e9803382bb7bd17d0c9 317 SUPERFAMILY SSF161098 33 300 4.77E-52 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_19695 0c18f185b6110e9803382bb7bd17d0c9 317 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 34 306 1.4E-86 T 31-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BRM88_19695 0c18f185b6110e9803382bb7bd17d0c9 317 Gene3D G3DSA:1.10.3720.10 36 307 4.3E-58 T 31-10-2018 IPR035906 MetI-like superfamily BRM88_12935 d8bfd10fe4e3f08d611e11f95b035e63 317 Pfam PF07920 Protein of unknown function (DUF1684) 174 310 4.8E-42 T 31-10-2018 IPR012467 Protein of unknown function DUF1684 BRM88_16955 1a44697a9196b0da04fb69a020b0cb39 398 Gene3D G3DSA:3.40.50.11010 18 367 2.3E-148 T 31-10-2018 BRM88_16955 1a44697a9196b0da04fb69a020b0cb39 398 Gene3D G3DSA:3.40.50.2000 206 361 2.3E-148 T 31-10-2018 BRM88_16955 1a44697a9196b0da04fb69a020b0cb39 398 SUPERFAMILY SSF53756 82 370 5.08E-10 T 31-10-2018 BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 Pfam PF00588 SpoU rRNA Methylase family 156 293 2.9E-28 T 31-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 SMART SM00967 65 140 7.1E-13 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 66 134 4.2E-13 T 31-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 Gene3D G3DSA:3.30.1330.30 53 135 1.0E-10 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 Gene3D G3DSA:3.40.1280.10 140 300 1.5E-35 T 31-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 SUPERFAMILY SSF55315 61 134 8.24E-12 T 31-10-2018 IPR029064 50S ribosomal protein L30e-like BRM88_18005 6b0fb7528cbade7697c6485a66a957b1 303 SUPERFAMILY SSF75217 152 298 3.92E-30 T 31-10-2018 IPR029028 Alpha/beta knot methyltransferases BRM88_24625 f565811b83b0984ba29489568750eb42 285 Pfam PF01569 PAP2 superfamily 136 238 3.1E-17 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_24625 f565811b83b0984ba29489568750eb42 285 ProSitePatterns PS01157 Class A bacterial acid phosphatases signature. 173 180 - T 31-10-2018 IPR018296 Acid phosphatase, class A, bacterial, conserved site GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PRINTS PR00483 Bacterial acid phosphatase class A signature 201 225 7.2E-38 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PRINTS PR00483 Bacterial acid phosphatase class A signature 143 161 7.2E-38 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PRINTS PR00483 Bacterial acid phosphatase class A signature 79 98 7.2E-38 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PRINTS PR00483 Bacterial acid phosphatase class A signature 235 253 7.2E-38 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PRINTS PR00483 Bacterial acid phosphatase class A signature 169 195 7.2E-38 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 PIRSF PIRSF000897 9 276 1.1E-116 T 31-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 BRM88_24625 f565811b83b0984ba29489568750eb42 285 Gene3D G3DSA:1.20.144.10 44 266 9.5E-77 T 31-10-2018 BRM88_24625 f565811b83b0984ba29489568750eb42 285 SUPERFAMILY SSF48317 45 257 6.02E-48 T 31-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BRM88_24625 f565811b83b0984ba29489568750eb42 285 SMART SM00014 124 238 7.0E-17 T 31-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BRM88_11560 a738b92a0a7f222b27d3b175ac8b5851 65 Pfam PF04024 PspC domain 6 62 7.5E-21 T 31-10-2018 IPR007168 Phage shock protein, PspC, N-terminal BRM88_13800 3e9069b2cb12ccdf587a08ca6ddf1a36 126 SMART SM00448 1 115 6.5E-35 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13800 3e9069b2cb12ccdf587a08ca6ddf1a36 126 Pfam PF00072 Response regulator receiver domain 3 115 5.1E-31 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_13800 3e9069b2cb12ccdf587a08ca6ddf1a36 126 SUPERFAMILY SSF52172 1 122 1.04E-37 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_13800 3e9069b2cb12ccdf587a08ca6ddf1a36 126 Gene3D G3DSA:3.40.50.2300 1 122 1.3E-38 T 31-10-2018 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.4E-67 T 31-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 1.0E-8 T 31-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Gene3D G3DSA:3.30.160.110 113 147 1.8E-16 T 31-10-2018 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Gene3D G3DSA:3.40.50.720 1 111 2.6E-27 T 31-10-2018 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 SUPERFAMILY SSF75615 114 206 7.19E-25 T 31-10-2018 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 SUPERFAMILY SSF53790 216 321 7.85E-15 T 31-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Pfam PF13241 Putative NAD(P)-binding 6 115 2.5E-24 T 31-10-2018 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 SUPERFAMILY SSF51735 1 111 3.94E-22 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 221 309 2.6E-10 T 31-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Gene3D G3DSA:3.40.1010.10 204 322 2.5E-14 T 31-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BRM88_16555 ed4d7af953d67d76a1f4d0b8245fb96d 325 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 2.8E-15 T 31-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 Gene3D G3DSA:3.40.50.300 4 176 9.2E-52 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 31-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 26.908 T 31-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 PRINTS PR01100 Shikimate kinase family signature 59 67 1.4E-20 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 PRINTS PR01100 Shikimate kinase family signature 7 22 1.4E-20 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 PRINTS PR01100 Shikimate kinase family signature 77 86 1.4E-20 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 PRINTS PR01100 Shikimate kinase family signature 98 115 1.4E-20 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 PRINTS PR01100 Shikimate kinase family signature 31 44 1.4E-20 T 31-10-2018 BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 SUPERFAMILY SSF52540 5 165 8.89E-30 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06370 9e72fb081b08d866df4759fbd6554cc6 180 Pfam PF01202 Shikimate kinase 13 167 3.9E-46 T 31-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BRM88_08985 ba882d45a6a8a5bc0324a19536b205dd 134 Gene3D G3DSA:3.40.50.2300 5 129 1.8E-21 T 31-10-2018 BRM88_08985 ba882d45a6a8a5bc0324a19536b205dd 134 SMART SM00448 8 119 6.0E-10 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_08985 ba882d45a6a8a5bc0324a19536b205dd 134 SUPERFAMILY SSF52172 10 127 6.12E-22 T 31-10-2018 IPR011006 CheY-like superfamily BRM88_08985 ba882d45a6a8a5bc0324a19536b205dd 134 Pfam PF00072 Response regulator receiver domain 10 120 5.8E-12 T 31-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BRM88_05545 e300c4f1093ce6fca82c3e08315e3293 223 SUPERFAMILY SSF53335 22 202 8.37E-21 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_05545 e300c4f1093ce6fca82c3e08315e3293 223 Gene3D G3DSA:3.40.50.150 20 209 4.4E-20 T 31-10-2018 BRM88_05545 e300c4f1093ce6fca82c3e08315e3293 223 Pfam PF08242 Methyltransferase domain 53 149 1.7E-14 T 31-10-2018 IPR013217 Methyltransferase type 12 BRM88_10000 881da3488c8af23b1f4719a221aec5ad 356 SUPERFAMILY SSF53335 79 352 2.76E-60 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_10000 881da3488c8af23b1f4719a221aec5ad 356 Gene3D G3DSA:3.40.50.150 68 350 2.6E-74 T 31-10-2018 BRM88_10000 881da3488c8af23b1f4719a221aec5ad 356 Pfam PF02353 Mycolic acid cyclopropane synthetase 77 338 7.0E-36 T 31-10-2018 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 Gene3D G3DSA:1.10.1040.10 170 300 6.8E-43 T 31-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 PIRSF PIRSF000103 2 300 1.7E-80 T 31-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 167 7.5E-51 T 31-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 11 24 - T 31-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 SUPERFAMILY SSF51735 6 167 1.11E-46 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 SUPERFAMILY SSF48179 168 298 1.03E-38 T 31-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 296 2.4E-33 T 31-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 Gene3D G3DSA:3.40.50.720 2 169 3.2E-58 T 31-10-2018 BRM88_09630 b931257c47560a5c537cef6b43c33c6e 300 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 11 296 3.7E-122 T 31-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 BRM88_23615 c380dddb5b0c1c69ee1bd0c54205d2cd 373 Pfam PF00487 Fatty acid desaturase 71 337 1.3E-32 T 31-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BRM88_10330 e65fa265378d3c8383dad1261523104b 344 Pfam PF05229 Spore Coat Protein U domain 210 340 6.2E-34 T 31-10-2018 IPR007893 Spore coat protein U BRM88_10330 e65fa265378d3c8383dad1261523104b 344 Pfam PF05229 Spore Coat Protein U domain 26 169 4.6E-18 T 31-10-2018 IPR007893 Spore coat protein U BRM88_10330 e65fa265378d3c8383dad1261523104b 344 SMART SM00972 283 341 4.7E-21 T 31-10-2018 IPR007893 Spore coat protein U BRM88_10330 e65fa265378d3c8383dad1261523104b 344 SMART SM00972 103 172 5.0E-12 T 31-10-2018 IPR007893 Spore coat protein U BRM88_02015 ec3f51426122adc0d6bf1b36e63dc156 156 Gene3D G3DSA:1.10.287.470 17 84 2.3E-8 T 31-10-2018 BRM88_02015 ec3f51426122adc0d6bf1b36e63dc156 156 Pfam PF13437 HlyD family secretion protein 84 143 1.0E-8 T 31-10-2018 BRM88_02015 ec3f51426122adc0d6bf1b36e63dc156 156 Gene3D G3DSA:2.40.30.170 121 142 2.3E-8 T 31-10-2018 BRM88_02015 ec3f51426122adc0d6bf1b36e63dc156 156 Gene3D G3DSA:2.40.50.100 85 120 2.3E-8 T 31-10-2018 BRM88_06960 98be4300861b7bbe652fa3015ce6eb29 600 Pfam PF06276 Ferric iron reductase FhuF-like transporter 398 553 1.1E-18 T 31-10-2018 IPR022770 Ferric iron reductase FhuF domain BRM88_06960 98be4300861b7bbe652fa3015ce6eb29 600 Gene3D G3DSA:1.10.510.40 365 523 3.2E-13 T 31-10-2018 BRM88_06960 98be4300861b7bbe652fa3015ce6eb29 600 Pfam PF04183 IucA / IucC family 160 375 8.2E-35 T 31-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 BRM88_16045 b11b0cd57403062e91d5dbff9ce63fba 156 SUPERFAMILY SSF82093 30 136 3.92E-36 T 31-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 BRM88_16045 b11b0cd57403062e91d5dbff9ce63fba 156 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 140 30.784 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BRM88_16045 b11b0cd57403062e91d5dbff9ce63fba 156 Gene3D G3DSA:2.40.50.140 30 136 1.1E-35 T 31-10-2018 BRM88_16045 b11b0cd57403062e91d5dbff9ce63fba 156 Pfam PF03100 CcmE 5 130 8.5E-44 T 31-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BRM88_03970 60ad77e8ec2c7279fc674cdf1432a468 351 Gene3D G3DSA:3.40.50.720 4 322 2.5E-129 T 31-10-2018 BRM88_03970 60ad77e8ec2c7279fc674cdf1432a468 351 Gene3D G3DSA:3.90.25.10 200 330 2.5E-129 T 31-10-2018 BRM88_03970 60ad77e8ec2c7279fc674cdf1432a468 351 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 323 2.4E-101 T 31-10-2018 IPR016040 NAD(P)-binding domain BRM88_03970 60ad77e8ec2c7279fc674cdf1432a468 351 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 335 3.0E-155 T 31-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 BRM88_03970 60ad77e8ec2c7279fc674cdf1432a468 351 SUPERFAMILY SSF51735 3 341 2.88E-93 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_18080 1a2c5c934121da50fd5c5844b5569617 530 Pfam PF03929 PepSY-associated TM region 26 470 2.4E-68 T 31-10-2018 IPR005625 PepSY-associated TM protein BRM88_01635 a08c383310b4d3a65c7bc0a80c002a16 194 Pfam PF02659 Putative manganese efflux pump 31 186 4.3E-49 T 31-10-2018 IPR003810 Putative manganese efflux pump BRM88_01635 a08c383310b4d3a65c7bc0a80c002a16 194 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 189 24.454 T 31-10-2018 IPR022929 Putative manganese efflux pump MntP BRM88_01875 488724267a93652faa4c82fd626879a4 397 Pfam PF12679 ABC-2 family transporter protein 11 354 3.4E-22 T 31-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BRM88_20450 2dc7966f8880a41f9cd6491d2a1582f7 255 Pfam PF05742 Transport and Golgi organisation 2 1 235 1.8E-49 T 31-10-2018 IPR008551 Transport and Golgi organisation protein 2 BRM88_17135 cb8677b08293b2e5fccd6ba9b896e777 199 Pfam PF01914 MarC family integral membrane protein 3 191 2.7E-48 T 31-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BRM88_18620 65c87b8e6a13876c3dc4f9f0b3b3191d 498 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 492 8.9E-197 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_18620 65c87b8e6a13876c3dc4f9f0b3b3191d 498 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 492 1.6E-220 T 31-10-2018 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath BRM88_24040 9d2c7adc7305a90b7ce91c99cd46287d 323 Gene3D G3DSA:3.20.20.100 3 321 2.7E-100 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_24040 9d2c7adc7305a90b7ce91c99cd46287d 323 Pfam PF00248 Aldo/keto reductase family 16 314 2.4E-67 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_24040 9d2c7adc7305a90b7ce91c99cd46287d 323 SUPERFAMILY SSF51430 5 316 1.83E-91 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_09890 a50ec56282af4fdc968f60e703d00ec2 458 Pfam PF00012 Hsp70 protein 151 277 2.2E-7 T 31-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BRM88_09890 a50ec56282af4fdc968f60e703d00ec2 458 SUPERFAMILY SSF53067 235 450 1.07E-21 T 31-10-2018 BRM88_09890 a50ec56282af4fdc968f60e703d00ec2 458 SUPERFAMILY SSF53067 2 229 9.59E-20 T 31-10-2018 BRM88_15980 0611d7418724fc963677fde7077dbdd2 310 Pfam PF13480 Acetyltransferase (GNAT) domain 158 279 1.2E-11 T 31-10-2018 IPR038740 BioF2-like, acetyltransferase domain KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BRM88_15980 0611d7418724fc963677fde7077dbdd2 310 SUPERFAMILY SSF55729 152 302 1.51E-24 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_15980 0611d7418724fc963677fde7077dbdd2 310 Gene3D G3DSA:3.40.630.30 150 298 5.0E-14 T 31-10-2018 BRM88_12130 3c98d247f68430eae99741100c70b0ca 346 SUPERFAMILY SSF52540 53 202 2.54E-12 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_12130 3c98d247f68430eae99741100c70b0ca 346 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 33 326 1.9E-65 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BRM88_12130 3c98d247f68430eae99741100c70b0ca 346 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 26 337 4.7E-105 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BRM88_12130 3c98d247f68430eae99741100c70b0ca 346 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 7 342 37.149 T 31-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BRM88_06955 489405ff235a92ac16139ad29d598e7c 398 Pfam PF07690 Major Facilitator Superfamily 21 269 1.4E-16 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_06955 489405ff235a92ac16139ad29d598e7c 398 Gene3D G3DSA:1.20.1250.20 215 397 1.2E-11 T 31-10-2018 BRM88_06955 489405ff235a92ac16139ad29d598e7c 398 Gene3D G3DSA:1.20.1250.20 4 214 1.7E-22 T 31-10-2018 BRM88_06955 489405ff235a92ac16139ad29d598e7c 398 SUPERFAMILY SSF103473 3 389 1.96E-35 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_06710 2386a0cc80a1dd528a13b6b7052026ec 295 Pfam PF05962 HutD 178 285 1.3E-17 T 31-10-2018 IPR010282 Uncharacterised protein family HutD/Ves BRM88_06710 2386a0cc80a1dd528a13b6b7052026ec 295 Pfam PF05962 HutD 39 107 1.0E-22 T 31-10-2018 IPR010282 Uncharacterised protein family HutD/Ves BRM88_06710 2386a0cc80a1dd528a13b6b7052026ec 295 Gene3D G3DSA:2.60.120.10 38 134 4.6E-19 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_06710 2386a0cc80a1dd528a13b6b7052026ec 295 SUPERFAMILY SSF51182 33 114 3.91E-22 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_06710 2386a0cc80a1dd528a13b6b7052026ec 295 SUPERFAMILY SSF51182 175 292 1.87E-21 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_02440 f489dd6365e944e39c8fa281741fc639 137 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 4 124 9.7E-59 T 31-10-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 BRM88_02440 f489dd6365e944e39c8fa281741fc639 137 SUPERFAMILY SSF69118 2 127 6.41E-37 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BRM88_02440 f489dd6365e944e39c8fa281741fc639 137 Gene3D G3DSA:1.20.1290.10 4 128 5.3E-38 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BRM88_02440 f489dd6365e944e39c8fa281741fc639 137 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 6.7E-25 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BRM88_07710 88ff4c78b1671938245d1dbbf9cf64d1 389 Pfam PF01609 Transposase DDE domain 143 318 3.7E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07710 88ff4c78b1671938245d1dbbf9cf64d1 389 Pfam PF05598 Transposase domain (DUF772) 57 131 1.1E-18 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_12355 44816e5b3b5aca8a4535dfbc62cd173b 150 Gene3D G3DSA:1.20.1050.10 22 134 7.8E-34 T 31-10-2018 BRM88_12355 44816e5b3b5aca8a4535dfbc62cd173b 150 Gene3D G3DSA:3.40.30.10 1 140 7.8E-34 T 31-10-2018 BRM88_12355 44816e5b3b5aca8a4535dfbc62cd173b 150 SUPERFAMILY SSF47616 21 149 1.71E-22 T 31-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BRM88_12355 44816e5b3b5aca8a4535dfbc62cd173b 150 Pfam PF13410 Glutathione S-transferase, C-terminal domain 69 125 8.9E-7 T 31-10-2018 BRM88_17145 cd368c1e1e72985c1116282545be6199 106 PIRSF PIRSF005894 1 106 8.7E-46 T 31-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 BRM88_17145 cd368c1e1e72985c1116282545be6199 106 SUPERFAMILY SSF52833 3 102 1.96E-29 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_17145 cd368c1e1e72985c1116282545be6199 106 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 101 7.2E-41 T 31-10-2018 IPR004480 Monothiol glutaredoxin-related BRM88_17145 cd368c1e1e72985c1116282545be6199 106 Pfam PF00462 Glutaredoxin 16 81 7.8E-17 T 31-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BRM88_17145 cd368c1e1e72985c1116282545be6199 106 Gene3D G3DSA:3.40.30.10 6 102 5.7E-30 T 31-10-2018 BRM88_08360 88ba42165fd7f00c3ad26721efca2075 301 Pfam PF13622 Thioesterase-like superfamily 31 286 1.1E-59 T 31-10-2018 BRM88_08360 88ba42165fd7f00c3ad26721efca2075 301 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 16 287 3.8E-89 T 31-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 BRM88_08360 88ba42165fd7f00c3ad26721efca2075 301 SUPERFAMILY SSF54637 120 287 1.39E-54 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_08360 88ba42165fd7f00c3ad26721efca2075 301 SUPERFAMILY SSF54637 8 118 2.46E-37 T 31-10-2018 IPR029069 HotDog domain superfamily BRM88_08360 88ba42165fd7f00c3ad26721efca2075 301 Gene3D G3DSA:3.10.129.90 8 289 3.5E-102 T 31-10-2018 BRM88_16060 61dde0fafbd6e5421934c59b4d1a2cb0 165 Pfam PF03918 Cytochrome C biogenesis protein 33 158 3.0E-47 T 31-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family BRM88_16060 61dde0fafbd6e5421934c59b4d1a2cb0 165 Gene3D G3DSA:1.10.8.640 42 127 7.3E-34 T 31-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 Pfam PF08212 Lipocalin-like domain 33 174 5.3E-44 T 31-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PIRSF PIRSF036893 1 177 2.2E-40 T 31-10-2018 IPR022271 Lipocalin, ApoD type BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 Gene3D G3DSA:2.40.128.20 10 176 6.1E-31 T 31-10-2018 IPR012674 Calycin BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 SUPERFAMILY SSF50814 8 174 1.22E-32 T 31-10-2018 IPR012674 Calycin BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PRINTS PR01171 Bacterial lipocalin signature 136 147 7.3E-9 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PRINTS PR01171 Bacterial lipocalin signature 33 47 7.3E-9 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PRINTS PR01171 Bacterial lipocalin signature 104 118 7.3E-9 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PRINTS PR01171 Bacterial lipocalin signature 50 66 7.3E-9 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_01315 3b33d713fb6e7d513dd6b579bc7e2914 177 PRINTS PR01171 Bacterial lipocalin signature 163 173 7.3E-9 T 31-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BRM88_08560 999a424ee3983b1e115a67cf11cd3351 258 Pfam PF11218 Protein of unknown function (DUF3011) 37 255 1.4E-73 T 31-10-2018 IPR021381 Protein of unknown function DUF3011 BRM88_23385 8f17d5907e905f0d5abc4f5fab85c85d 2818 SUPERFAMILY SSF48371 1114 1369 8.06E-14 T 31-10-2018 IPR016024 Armadillo-type fold BRM88_23385 8f17d5907e905f0d5abc4f5fab85c85d 2818 SUPERFAMILY SSF48371 357 758 8.35E-33 T 31-10-2018 IPR016024 Armadillo-type fold BRM88_23385 8f17d5907e905f0d5abc4f5fab85c85d 2818 SUPERFAMILY SSF48371 776 1111 2.84E-28 T 31-10-2018 IPR016024 Armadillo-type fold BRM88_23385 8f17d5907e905f0d5abc4f5fab85c85d 2818 Gene3D G3DSA:1.25.10.10 873 1265 9.7E-24 T 31-10-2018 IPR011989 Armadillo-like helical BRM88_23385 8f17d5907e905f0d5abc4f5fab85c85d 2818 Gene3D G3DSA:1.25.10.10 199 634 1.0E-19 T 31-10-2018 IPR011989 Armadillo-like helical BRM88_24535 00119c420d59693a1db8fa2a64c7946d 169 Pfam PF13503 Domain of unknown function (DUF4123) 7 130 5.4E-22 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_23910 042108a577010b8e983db8b8bc06624d 158 SMART SM00855 3 114 1.4E-6 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_23910 042108a577010b8e983db8b8bc06624d 158 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 98 6.0E-14 T 31-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BRM88_23910 042108a577010b8e983db8b8bc06624d 158 SUPERFAMILY SSF53254 1 140 7.9E-27 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_23910 042108a577010b8e983db8b8bc06624d 158 Gene3D G3DSA:3.40.50.1240 1 158 6.7E-42 T 31-10-2018 IPR029033 Histidine phosphatase superfamily BRM88_04040 5361bca70ca63858abfae23a77043a34 280 Pfam PF00005 ABC transporter 41 190 3.8E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_04040 5361bca70ca63858abfae23a77043a34 280 SUPERFAMILY SSF52540 24 250 4.95E-59 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_04040 5361bca70ca63858abfae23a77043a34 280 Gene3D G3DSA:3.40.50.300 22 279 2.1E-63 T 31-10-2018 BRM88_04040 5361bca70ca63858abfae23a77043a34 280 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_04040 5361bca70ca63858abfae23a77043a34 280 SMART SM00382 48 238 3.3E-15 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_20300 5372786d23ce84a50aa3ed82dcc57e61 311 SUPERFAMILY SSF51735 7 173 4.37E-35 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_20300 5372786d23ce84a50aa3ed82dcc57e61 311 Gene3D G3DSA:3.30.360.10 120 310 1.3E-76 T 31-10-2018 BRM88_20300 5372786d23ce84a50aa3ed82dcc57e61 311 Gene3D G3DSA:3.40.50.720 2 119 5.4E-36 T 31-10-2018 BRM88_20300 5372786d23ce84a50aa3ed82dcc57e61 311 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 116 2.0E-17 T 31-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BRM88_23455 588506c2c47912fe51657dc0dd8c8c16 261 Gene3D G3DSA:3.30.2010.10 166 247 1.3E-14 T 31-10-2018 BRM88_23455 588506c2c47912fe51657dc0dd8c8c16 261 Pfam PF01863 Protein of unknown function DUF45 41 246 2.8E-46 T 31-10-2018 IPR002725 Protein of unknown function DUF45 BRM88_01700 b8677ec95220704f84223bfb25f9a47e 143 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 25 41 - T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BRM88_01700 b8677ec95220704f84223bfb25f9a47e 143 Gene3D G3DSA:3.30.160.20 6 141 6.8E-38 T 31-10-2018 BRM88_01700 b8677ec95220704f84223bfb25f9a47e 143 Pfam PF00472 RF-1 domain 12 137 2.4E-21 T 31-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BRM88_01700 b8677ec95220704f84223bfb25f9a47e 143 SUPERFAMILY SSF110916 11 101 1.83E-12 T 31-10-2018 BRM88_12955 8b55d89e9c48f845ff1a066d16a0b830 260 Gene3D G3DSA:3.90.226.10 1 202 9.6E-77 T 31-10-2018 BRM88_12955 8b55d89e9c48f845ff1a066d16a0b830 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 259 5.4E-67 T 31-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BRM88_12955 8b55d89e9c48f845ff1a066d16a0b830 260 Gene3D G3DSA:1.10.12.10 203 260 3.4E-16 T 31-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BRM88_12955 8b55d89e9c48f845ff1a066d16a0b830 260 SUPERFAMILY SSF52096 2 260 4.8E-88 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_12955 8b55d89e9c48f845ff1a066d16a0b830 260 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 31-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BRM88_02230 a9e05256c2fd18452998accbb691987b 368 Pfam PF01594 AI-2E family transporter 34 354 6.0E-44 T 31-10-2018 IPR002549 Transmembrane protein TqsA-like BRM88_16615 a88e0ea1754f5b7afda118a0e1290414 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_16615 a88e0ea1754f5b7afda118a0e1290414 411 Pfam PF01610 Transposase 155 389 1.7E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_03560 511e721772eb450c7bdefaa5858a47c0 298 SUPERFAMILY SSF103481 48 144 6.41E-16 T 31-10-2018 BRM88_03560 511e721772eb450c7bdefaa5858a47c0 298 Pfam PF00892 EamA-like transporter family 154 280 5.4E-9 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_03560 511e721772eb450c7bdefaa5858a47c0 298 Pfam PF00892 EamA-like transporter family 10 141 8.4E-17 T 31-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BRM88_03560 511e721772eb450c7bdefaa5858a47c0 298 SUPERFAMILY SSF103481 185 284 3.53E-9 T 31-10-2018 BRM88_04695 8a9bd03099fbda9d417d28c37676569d 444 Pfam PF04932 O-Antigen ligase 221 372 4.7E-22 T 31-10-2018 IPR007016 O-antigen ligase-related BRM88_01280 b2facd492dc629c26d710230efade6d0 214 Pfam PF14300 Domain of unknown function (DUF4375) 98 204 3.0E-11 T 31-10-2018 IPR025402 Domain of unknown function DUF4375 BRM88_21500 e86d3ab34cde2e2cb4419f86e54ce6d5 458 Gene3D G3DSA:1.20.1740.10 9 458 4.4E-62 T 31-10-2018 BRM88_21500 e86d3ab34cde2e2cb4419f86e54ce6d5 458 PIRSF PIRSF006060 1 456 2.1E-70 T 31-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BRM88_21500 e86d3ab34cde2e2cb4419f86e54ce6d5 458 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 31-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BRM88_21500 e86d3ab34cde2e2cb4419f86e54ce6d5 458 Pfam PF00324 Amino acid permease 18 457 7.2E-113 T 31-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BRM88_18300 15e788e7967f56260c6e0bac3937a366 656 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 10 612 8.4E-178 T 31-10-2018 IPR004814 Oligopeptide transporter OPT BRM88_18300 15e788e7967f56260c6e0bac3937a366 656 Pfam PF03169 OPT oligopeptide transporter protein 9 611 1.5E-127 T 31-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 BRM88_18300 15e788e7967f56260c6e0bac3937a366 656 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 4 608 3.3E-86 T 31-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 BRM88_11030 2403adc5cd94fd9e474f2c5acfdeaccf 439 Pfam PF13546 DDE superfamily endonuclease 18 291 1.4E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_11030 2403adc5cd94fd9e474f2c5acfdeaccf 439 SUPERFAMILY SSF53098 25 403 4.7E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_14400 eb3895667e5afc93aeb808645151549b 166 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 138 1.8E-32 T 31-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BRM88_14400 eb3895667e5afc93aeb808645151549b 166 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 128 2.0E-31 T 31-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BRM88_14400 eb3895667e5afc93aeb808645151549b 166 Gene3D G3DSA:3.40.50.300 2 152 3.5E-35 T 31-10-2018 BRM88_14400 eb3895667e5afc93aeb808645151549b 166 SUPERFAMILY SSF52540 29 139 3.48E-16 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23920 7cc849459ef1c6fe93cc440e9827a2ce 305 Gene3D G3DSA:1.20.1530.20 157 304 7.9E-6 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily BRM88_23920 7cc849459ef1c6fe93cc440e9827a2ce 305 Pfam PF03547 Membrane transport protein 7 138 7.1E-9 T 31-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BRM88_23920 7cc849459ef1c6fe93cc440e9827a2ce 305 Pfam PF03547 Membrane transport protein 159 296 5.6E-15 T 31-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BRM88_16055 017525b9a488f1853d37eec01cd3f0f9 180 SUPERFAMILY SSF52833 33 178 4.71E-34 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_16055 017525b9a488f1853d37eec01cd3f0f9 180 Gene3D G3DSA:3.40.30.10 23 177 7.7E-40 T 31-10-2018 BRM88_16055 017525b9a488f1853d37eec01cd3f0f9 180 Pfam PF08534 Redoxin 38 162 1.7E-16 T 31-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BRM88_16055 017525b9a488f1853d37eec01cd3f0f9 180 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 4 172 1.3E-48 T 31-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 BRM88_00160 6d465fe7e6724a1fe7c1cde4879ebfcf 293 SUPERFAMILY SSF52540 61 273 1.45E-41 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_00160 6d465fe7e6724a1fe7c1cde4879ebfcf 293 Gene3D G3DSA:3.40.50.300 53 287 1.1E-39 T 31-10-2018 BRM88_00160 6d465fe7e6724a1fe7c1cde4879ebfcf 293 SMART SM00382 86 262 7.1E-8 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_00160 6d465fe7e6724a1fe7c1cde4879ebfcf 293 Pfam PF00005 ABC transporter 80 212 5.9E-15 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 Gene3D G3DSA:3.30.420.10 18 211 1.5E-50 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 Pfam PF00929 Exonuclease 28 202 2.3E-24 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 SMART SM00479 26 211 4.0E-24 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 Hamap MF_00157 Ribonuclease T [rnt]. 1 213 86.118 T 31-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 TIGRFAM TIGR01298 RNaseT: ribonuclease T 18 210 8.6E-100 T 31-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BRM88_13050 6ad484e1743f1c6cb92e797f446a8d24 213 SUPERFAMILY SSF53098 17 210 1.79E-52 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_15955 b270e0e3f407d601be3c1e1b67b2bf0d 283 Pfam PF02706 Chain length determinant protein 5 58 8.9E-9 T 31-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 BRM88_20140 b436ee0215abb42385c5fa570ba6773a 215 SUPERFAMILY SSF144064 10 181 6.28E-28 T 31-10-2018 BRM88_07665 1a74345bd85d46d7cf761cd5338434ee 302 Gene3D G3DSA:3.40.50.150 1 302 5.2E-105 T 31-10-2018 BRM88_07665 1a74345bd85d46d7cf761cd5338434ee 302 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 298 2.3E-94 T 31-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BRM88_07665 1a74345bd85d46d7cf761cd5338434ee 302 SUPERFAMILY SSF53335 8 297 7.75E-79 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_07665 1a74345bd85d46d7cf761cd5338434ee 302 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 288 39.597 T 31-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BRM88_00470 78670e0d8b2dc2ddffd76b18ec071a0d 209 Pfam PF09502 Bacterial type III secretion protein (HrpB4) 5 203 4.2E-39 T 31-10-2018 IPR013393 Type III secretion protein HrpB4 BRM88_00470 78670e0d8b2dc2ddffd76b18ec071a0d 209 TIGRFAM TIGR02560 HrpB4: type III secretion protein HrpB4 2 209 1.0E-73 T 31-10-2018 IPR013393 Type III secretion protein HrpB4 BRM88_05335 e4dcf90105be84ddf6773a29c6bc8e12 228 Gene3D G3DSA:1.10.443.10 49 214 4.5E-9 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_05335 e4dcf90105be84ddf6773a29c6bc8e12 228 Pfam PF00589 Phage integrase family 53 168 2.6E-5 T 31-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BRM88_05335 e4dcf90105be84ddf6773a29c6bc8e12 228 SUPERFAMILY SSF56349 2 212 1.06E-23 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_24255 2df5eded1ba9124df4cdc5c41926e90a 223 SUPERFAMILY SSF89562 22 182 6.93E-49 T 31-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily BRM88_24255 2df5eded1ba9124df4cdc5c41926e90a 223 Pfam PF03737 Aldolase/RraA 25 172 2.4E-40 T 31-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein BRM88_24255 2df5eded1ba9124df4cdc5c41926e90a 223 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 4 223 5.7E-113 T 31-10-2018 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 BRM88_24255 2df5eded1ba9124df4cdc5c41926e90a 223 Gene3D G3DSA:3.50.30.40 23 173 4.4E-54 T 31-10-2018 BRM88_05725 ae324248544154f255bda670517157f0 207 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 8 206 23.383 T 31-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_05725 ae324248544154f255bda670517157f0 207 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 10 199 6.0E-55 T 31-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_05725 ae324248544154f255bda670517157f0 207 Gene3D G3DSA:3.20.20.70 2 206 2.7E-52 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_05725 ae324248544154f255bda670517157f0 207 Pfam PF02581 Thiamine monophosphate synthase 10 188 4.0E-49 T 31-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_05725 ae324248544154f255bda670517157f0 207 SUPERFAMILY SSF51391 5 202 4.45E-52 T 31-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BRM88_08610 e57975bae4fd38abb89eb50fda6869f2 259 Pfam PF01618 MotA/TolQ/ExbB proton channel family 113 241 8.9E-38 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BRM88_08610 e57975bae4fd38abb89eb50fda6869f2 259 TIGRFAM TIGR02796 tolQ: protein TolQ 38 253 4.2E-87 T 31-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 BRM88_08610 e57975bae4fd38abb89eb50fda6869f2 259 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 37 258 39.881 T 31-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 BRM88_02515 aad4e9edf1d050700f39219dbd684e27 240 Pfam PF00535 Glycosyl transferase family 2 7 168 7.7E-24 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_02515 aad4e9edf1d050700f39219dbd684e27 240 SUPERFAMILY SSF53448 1 228 6.12E-40 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_02515 aad4e9edf1d050700f39219dbd684e27 240 Gene3D G3DSA:3.90.550.10 1 236 3.2E-34 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_16300 35dea870a621075c3f2675bd2a84804a 277 PIRSF PIRSF029288 1 271 2.1E-98 T 31-10-2018 IPR009211 Predicted virulence protein, SciE type BRM88_16300 35dea870a621075c3f2675bd2a84804a 277 SUPERFAMILY SSF144059 10 269 7.06E-78 T 31-10-2018 BRM88_16300 35dea870a621075c3f2675bd2a84804a 277 Pfam PF07024 ImpE protein 145 264 5.8E-37 T 31-10-2018 IPR009211 Predicted virulence protein, SciE type BRM88_16300 35dea870a621075c3f2675bd2a84804a 277 Gene3D G3DSA:1.25.40.10 8 93 1.6E-16 T 31-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BRM88_24275 c9312261fefac8e8117e3b5b533c526d 464 SUPERFAMILY SSF51905 12 235 4.47E-17 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_24275 c9312261fefac8e8117e3b5b533c526d 464 Pfam PF13454 FAD-NAD(P)-binding 13 164 1.5E-31 T 31-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain BRM88_24275 c9312261fefac8e8117e3b5b533c526d 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 199 217 2.0E-6 T 31-10-2018 BRM88_24275 c9312261fefac8e8117e3b5b533c526d 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 2.0E-6 T 31-10-2018 BRM88_24275 c9312261fefac8e8117e3b5b533c526d 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 2.0E-6 T 31-10-2018 BRM88_02635 82173988a0cfe9ef9bda3312a2d405ab 75 Pfam PF04519 Polymer-forming cytoskeletal 16 75 1.7E-10 T 31-10-2018 IPR007607 Bactofilin A/B BRM88_23005 54be356357d1ccdc5bdc5e7e5eb59d5e 143 Gene3D G3DSA:1.10.10.10 12 130 4.1E-41 T 31-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BRM88_23005 54be356357d1ccdc5bdc5e7e5eb59d5e 143 SUPERFAMILY SSF46785 18 129 5.85E-34 T 31-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BRM88_23005 54be356357d1ccdc5bdc5e7e5eb59d5e 143 Pfam PF01638 HxlR-like helix-turn-helix 31 116 7.8E-27 T 31-10-2018 IPR002577 Helix-turn-helix, HxlR type BRM88_05235 3c435ff9a51dc6e08d779aa8053071b3 150 Pfam PF00075 RNase H 2 140 2.9E-46 T 31-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 BRM88_05235 3c435ff9a51dc6e08d779aa8053071b3 150 Hamap MF_00042 Ribonuclease H [rnhA]. 1 149 36.584 T 31-10-2018 IPR022892 Ribonuclease HI GO:0004523 BRM88_05235 3c435ff9a51dc6e08d779aa8053071b3 150 Gene3D G3DSA:3.30.420.10 1 149 2.5E-58 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_05235 3c435ff9a51dc6e08d779aa8053071b3 150 SUPERFAMILY SSF53098 2 140 2.4E-54 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_21610 f888226743beb974e0a0faaed79b63d3 163 Pfam PF00583 Acetyltransferase (GNAT) family 52 139 1.8E-19 T 31-10-2018 IPR000182 GNAT domain BRM88_21610 f888226743beb974e0a0faaed79b63d3 163 Gene3D G3DSA:3.40.630.30 3 161 1.4E-51 T 31-10-2018 BRM88_21610 f888226743beb974e0a0faaed79b63d3 163 SUPERFAMILY SSF55729 7 156 1.63E-39 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_08180 d132a515ac85032438627486b7617977 419 Pfam PF00482 Type II secretion system (T2SS), protein F 84 207 2.8E-31 T 31-10-2018 IPR018076 Type II secretion system F domain BRM88_08180 d132a515ac85032438627486b7617977 419 Pfam PF00482 Type II secretion system (T2SS), protein F 288 410 6.9E-29 T 31-10-2018 IPR018076 Type II secretion system F domain BRM88_08180 d132a515ac85032438627486b7617977 419 PRINTS PR00812 Bacterial general secretion pathway protein F signature 399 418 1.3E-17 T 31-10-2018 IPR003004 GspF/PilC family BRM88_08180 d132a515ac85032438627486b7617977 419 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 397 1.3E-17 T 31-10-2018 IPR003004 GspF/PilC family BRM88_08180 d132a515ac85032438627486b7617977 419 PRINTS PR00812 Bacterial general secretion pathway protein F signature 80 92 1.3E-17 T 31-10-2018 IPR003004 GspF/PilC family BRM88_08180 d132a515ac85032438627486b7617977 419 PRINTS PR00812 Bacterial general secretion pathway protein F signature 179 207 1.3E-17 T 31-10-2018 IPR003004 GspF/PilC family BRM88_08180 d132a515ac85032438627486b7617977 419 Gene3D G3DSA:1.20.81.30 72 186 1.4E-29 T 31-10-2018 BRM88_08180 d132a515ac85032438627486b7617977 419 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 179 207 - T 31-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 BRM88_08180 d132a515ac85032438627486b7617977 419 Gene3D G3DSA:1.20.81.30 271 382 7.0E-27 T 31-10-2018 BRM88_01645 30e62e6bf0127ddbfd19c29a3f6f8f8c 433 SUPERFAMILY SSF103473 12 425 2.88E-40 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_01645 30e62e6bf0127ddbfd19c29a3f6f8f8c 433 Pfam PF07690 Major Facilitator Superfamily 28 379 8.4E-21 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_01645 30e62e6bf0127ddbfd19c29a3f6f8f8c 433 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 19 422 7.7E-134 T 31-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 BRM88_01645 30e62e6bf0127ddbfd19c29a3f6f8f8c 433 Gene3D G3DSA:1.20.1250.20 17 232 5.8E-60 T 31-10-2018 BRM88_01645 30e62e6bf0127ddbfd19c29a3f6f8f8c 433 Gene3D G3DSA:1.20.1250.20 238 427 3.4E-53 T 31-10-2018 BRM88_07740 b9724782c4dea61fba3e3c4097e7034a 270 Pfam PF00112 Papain family cysteine protease 54 255 4.0E-11 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_07740 b9724782c4dea61fba3e3c4097e7034a 270 SUPERFAMILY SSF54001 39 266 1.58E-37 T 31-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BRM88_07740 b9724782c4dea61fba3e3c4097e7034a 270 Gene3D G3DSA:3.90.70.10 25 269 2.8E-39 T 31-10-2018 BRM88_07740 b9724782c4dea61fba3e3c4097e7034a 270 SMART SM00645 53 267 1.1E-5 T 31-10-2018 IPR000668 Peptidase C1A, papain C-terminal GO:0006508|GO:0008234 BRM88_22090 cad4b1ff8e6643602d97edb68ee91f26 239 Pfam PF02104 SURF1 family 16 220 2.1E-22 T 31-10-2018 IPR002994 Surfeit locus 1/Shy1 GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BRM88_07145 8562dac5760eb82e88681a91032e1e5f 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.1E-8 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_07145 8562dac5760eb82e88681a91032e1e5f 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_07145 8562dac5760eb82e88681a91032e1e5f 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_08270 012b91c295398f35ad06b7c7ed24cf03 168 Pfam PF13761 Domain of unknown function (DUF4166) 10 165 2.1E-33 T 31-10-2018 IPR025311 Domain of unknown function DUF4166 BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 208 2.7E-100 T 31-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 SUPERFAMILY SSF100950 3 207 4.19E-74 T 31-10-2018 IPR037171 NagB/RpiA transferase-like BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 Pfam PF01144 Coenzyme A transferase 7 195 5.5E-42 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 Gene3D G3DSA:3.40.1080.10 2 209 2.3E-103 T 31-10-2018 BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 SMART SM00882 6 202 3.1E-80 T 31-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BRM88_04005 a317ff9a6459c2c73e812231e552ec7a 209 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 31-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 BRM88_11460 84bb6abcbccc3ae932fe9913921fd7b6 91 Gene3D G3DSA:1.10.890.40 13 90 3.4E-23 T 31-10-2018 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 Pfam PF07690 Major Facilitator Superfamily 21 354 5.3E-45 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 Gene3D G3DSA:1.20.1250.20 10 359 2.3E-64 T 31-10-2018 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 SUPERFAMILY SSF103473 13 355 1.29E-60 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 116 137 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 263 283 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 27 43 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 89 113 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 234 251 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 291 312 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 146 168 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_01405 00e56cbd10012d7098f58e22907d1aec 434 PRINTS PR01035 Tetracycline resistance protein signature 174 194 5.9E-43 T 31-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BRM88_16305 c3f64faebe93b484bc3e5add49d1fde1 167 Pfam PF05638 Type VI secretion system effector, Hcp 12 140 7.1E-29 T 31-10-2018 IPR008514 Type VI secretion system effector, Hcp BRM88_16305 c3f64faebe93b484bc3e5add49d1fde1 167 SUPERFAMILY SSF141452 2 165 1.57E-40 T 31-10-2018 IPR036624 Hcp1-like superfamily BRM88_16305 c3f64faebe93b484bc3e5add49d1fde1 167 Gene3D G3DSA:2.30.110.20 1 166 8.3E-48 T 31-10-2018 IPR036624 Hcp1-like superfamily BRM88_22140 c6c8c3359d3dffaf9d2ab314733844b2 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_22140 c6c8c3359d3dffaf9d2ab314733844b2 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.6E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_22140 c6c8c3359d3dffaf9d2ab314733844b2 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_05865 9375ab9899ed15d01cca631d3b4fabd8 126 SUPERFAMILY SSF55298 2 125 1.02E-44 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_05865 9375ab9899ed15d01cca631d3b4fabd8 126 Pfam PF01042 Endoribonuclease L-PSP 8 124 2.7E-40 T 31-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BRM88_05865 9375ab9899ed15d01cca631d3b4fabd8 126 Gene3D G3DSA:3.30.1330.40 1 126 2.5E-51 T 31-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BRM88_05865 9375ab9899ed15d01cca631d3b4fabd8 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 3.2E-49 T 31-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 BRM88_18495 405acf7242ed51d2e1b6a5b9f69b9bc9 102 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 99 7.6E-15 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BRM88_18495 405acf7242ed51d2e1b6a5b9f69b9bc9 102 Gene3D G3DSA:3.30.2310.20 2 102 7.9E-10 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_00335 520017672b723aaa6bc27c653f1972d2 210 SUPERFAMILY SSF51735 1 200 4.67E-38 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_00335 520017672b723aaa6bc27c653f1972d2 210 Gene3D G3DSA:3.40.50.720 1 210 2.8E-57 T 31-10-2018 BRM88_00335 520017672b723aaa6bc27c653f1972d2 210 Pfam PF13460 NAD(P)H-binding 7 152 2.1E-8 T 31-10-2018 IPR016040 NAD(P)-binding domain BRM88_23315 d2392f73b8711ef952aca40ba0c0128d 572 SUPERFAMILY SSF56219 271 571 2.62E-30 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_23315 d2392f73b8711ef952aca40ba0c0128d 572 Gene3D G3DSA:3.60.10.10 273 570 1.2E-30 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_05605 993d3de89749ad5fdbc341c7ac1e208e 442 Pfam PF03600 Citrate transporter 13 386 2.0E-56 T 31-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BRM88_05605 993d3de89749ad5fdbc341c7ac1e208e 442 TIGRFAM TIGR00784 citMHS: citrate transporter 1 436 5.8E-190 T 31-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 561 592 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 867 898 9.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 663 694 9.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 493 524 2.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 901 932 8.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 765 796 9.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 595 626 3.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 935 966 9.3E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 357 388 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 697 728 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 425 456 2.1E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 527 558 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 459 490 1.9E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 323 354 4.4E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 731 762 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 289 320 1.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 391 422 3.9E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 833 864 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 799 830 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 629 660 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_12005 29c76e3cc1cb6994765827e39cef6451 1251 Pfam PF03377 TAL effector repeat 971 995 0.047 T 31-10-2018 IPR005042 TAL effector repeat BRM88_00035 e3ae156028dbfeb3b41f5dd234e46cd7 268 Pfam PF01435 Peptidase family M48 61 246 1.5E-36 T 31-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 Pfam PF01555 DNA methylase 167 226 3.5E-13 T 31-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 Pfam PF01555 DNA methylase 23 146 6.6E-11 T 31-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 21 35 8.5E-22 T 31-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 170 187 8.5E-22 T 31-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 211 231 8.5E-22 T 31-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 188 206 8.5E-22 T 31-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 75 95 8.5E-22 T 31-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 25 31 - T 31-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 SUPERFAMILY SSF53335 2 231 3.46E-51 T 31-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BRM88_08935 b25d6ac11ad02074ac00eabf965ab79f 233 Gene3D G3DSA:3.40.50.150 1 233 3.2E-47 T 31-10-2018 BRM88_15640 b7fb24a1c9cdfd2907dd073376682aab 231 Gene3D G3DSA:3.40.50.300 3 147 1.5E-31 T 31-10-2018 BRM88_15640 b7fb24a1c9cdfd2907dd073376682aab 231 Pfam PF03796 DnaB-like helicase C terminal domain 12 133 7.1E-28 T 31-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 BRM88_15640 b7fb24a1c9cdfd2907dd073376682aab 231 SUPERFAMILY SSF52540 8 129 9.57E-14 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_19395 9e7a05ac1ba42c8c1fed2b720de6318d 161 Pfam PF11304 Protein of unknown function (DUF3106) 54 150 3.5E-22 T 31-10-2018 IPR021455 Protein of unknown function DUF3106 BRM88_10130 355c2f1d0e3c2475e246d65a9bc06f44 131 Pfam PF08845 Toxin SymE, type I toxin-antitoxin system 72 128 5.2E-19 T 31-10-2018 IPR014944 Toxin SymE-like GO:0003723|GO:0005737|GO:0016070|GO:0016788 BRM88_18715 20cdbcc8876d87dbe6530a91a937a760 154 Pfam PF11745 Protein of unknown function (DUF3304) 21 121 4.0E-24 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_20255 b0eed54ff36e0fb76f7fcad7a6aaf26b 181 Gene3D G3DSA:3.40.50.1820 21 174 2.1E-16 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_20255 b0eed54ff36e0fb76f7fcad7a6aaf26b 181 Pfam PF00326 Prolyl oligopeptidase family 86 139 5.8E-11 T 31-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BRM88_20255 b0eed54ff36e0fb76f7fcad7a6aaf26b 181 SUPERFAMILY SSF53474 46 141 1.42E-16 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_09625 9e16f333d08e2592341e9609efdb0ac8 390 SUPERFAMILY SSF52096 20 357 2.94E-56 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_09625 9e16f333d08e2592341e9609efdb0ac8 390 Pfam PF16113 Enoyl-CoA hydratase/isomerase 25 373 1.8E-111 T 31-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 BRM88_09625 9e16f333d08e2592341e9609efdb0ac8 390 Gene3D G3DSA:3.90.226.10 10 390 1.3E-120 T 31-10-2018 BRM88_06210 a3100411348242356cbcbe4e4f071512 205 Pfam PF13419 Haloacid dehalogenase-like hydrolase 131 186 1.1E-5 T 31-10-2018 BRM88_06210 a3100411348242356cbcbe4e4f071512 205 Gene3D G3DSA:1.10.150.240 22 87 4.8E-28 T 31-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BRM88_06210 a3100411348242356cbcbe4e4f071512 205 Gene3D G3DSA:3.40.50.1000 11 186 4.8E-28 T 31-10-2018 IPR023214 HAD superfamily BRM88_06210 a3100411348242356cbcbe4e4f071512 205 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 139 186 9.2E-10 T 31-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BRM88_06210 a3100411348242356cbcbe4e4f071512 205 SUPERFAMILY SSF56784 9 196 6.15E-28 T 31-10-2018 IPR036412 HAD-like superfamily BRM88_15455 53bffbb1367fd57388832feb089f827d 298 Pfam PF00682 HMGL-like 5 275 1.3E-52 T 31-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BRM88_15455 53bffbb1367fd57388832feb089f827d 298 Gene3D G3DSA:3.20.20.70 1 298 8.6E-130 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_15455 53bffbb1367fd57388832feb089f827d 298 SUPERFAMILY SSF51569 2 285 8.35E-71 T 31-10-2018 BRM88_16285 0ad6feb593d55332210a10aa052124c7 336 Pfam PF06996 Type VI secretion, TssG 21 320 3.3E-99 T 31-10-2018 IPR010732 Type VI secretion, TssG-like BRM88_16285 0ad6feb593d55332210a10aa052124c7 336 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 21 320 2.0E-109 T 31-10-2018 IPR010732 Type VI secretion, TssG-like BRM88_09155 5f6e391ad1967411b54ccf024be057b7 360 SUPERFAMILY SSF53098 204 334 8.72E-9 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_09155 5f6e391ad1967411b54ccf024be057b7 360 Pfam PF13358 DDE superfamily endonuclease 172 318 1.8E-22 T 31-10-2018 IPR038717 Tc1-like transposase, DDE domain BRM88_09155 5f6e391ad1967411b54ccf024be057b7 360 SUPERFAMILY SSF46689 35 132 1.58E-15 T 31-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BRM88_09155 5f6e391ad1967411b54ccf024be057b7 360 Pfam PF13518 Helix-turn-helix domain 35 86 9.9E-14 T 31-10-2018 BRM88_23265 e55a5124735592eaffff7e855961cd8e 536 SUPERFAMILY SSF52096 23 270 9.81E-72 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_23265 e55a5124735592eaffff7e855961cd8e 536 Gene3D G3DSA:3.90.226.10 275 536 4.5E-102 T 31-10-2018 BRM88_23265 e55a5124735592eaffff7e855961cd8e 536 SUPERFAMILY SSF52096 277 536 1.32E-85 T 31-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BRM88_23265 e55a5124735592eaffff7e855961cd8e 536 Gene3D G3DSA:3.90.226.10 1 272 1.4E-96 T 31-10-2018 BRM88_23265 e55a5124735592eaffff7e855961cd8e 536 Pfam PF01039 Carboxyl transferase domain 48 526 5.3E-147 T 31-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BRM88_10095 577dadd3eaa99cabc785fbd7c200de6e 325 Gene3D G3DSA:3.20.20.330 10 317 7.8E-116 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BRM88_10095 577dadd3eaa99cabc785fbd7c200de6e 325 SUPERFAMILY SSF82282 17 317 1.11E-83 T 31-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BRM88_10095 577dadd3eaa99cabc785fbd7c200de6e 325 Pfam PF02574 Homocysteine S-methyltransferase 24 317 7.5E-81 T 31-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BRM88_10095 577dadd3eaa99cabc785fbd7c200de6e 325 PIRSF PIRSF037505 280 325 1.7 T 31-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 BRM88_10095 577dadd3eaa99cabc785fbd7c200de6e 325 PIRSF PIRSF037505 7 184 1.0E-5 T 31-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 22 178 2.6E-41 T 31-10-2018 IPR026353 Hypoxanthine-DNA glycosylase BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 Pfam PF03167 Uracil DNA glycosylase superfamily 28 178 4.5E-11 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 SMART SM00987 24 179 3.4E-11 T 31-10-2018 BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 Gene3D G3DSA:3.40.470.10 18 186 2.7E-48 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 SMART SM00986 24 179 3.4E-11 T 31-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_03590 8db827515a2bc71bb633d78b8192f57a 186 SUPERFAMILY SSF52141 23 184 2.75E-38 T 31-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BRM88_18665 5da86dc4449b5ac093da32bb98aa6700 129 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 17 96 2.9E-21 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_19635 30556790a1e515323fad4bb727350656 248 Pfam PF02674 Colicin V production protein 2 140 1.2E-29 T 31-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 BRM88_03490 65a0d75c3d81b21d467737334a5df1e1 102 Gene3D G3DSA:2.30.30.720 1 102 5.3E-41 T 31-10-2018 BRM88_03490 65a0d75c3d81b21d467737334a5df1e1 102 Pfam PF11607 Protein of unknown function (DUF3247) 1 92 9.9E-40 T 31-10-2018 IPR021649 Protein of unknown function DUF3247 BRM88_09500 a301827d5b04a49646a12392a79c3bb8 295 Pfam PF01551 Peptidase family M23 170 270 1.4E-24 T 31-10-2018 IPR016047 Peptidase M23 BRM88_09500 a301827d5b04a49646a12392a79c3bb8 295 Gene3D G3DSA:2.70.70.10 145 279 4.1E-34 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_09500 a301827d5b04a49646a12392a79c3bb8 295 SUPERFAMILY SSF51261 148 270 2.46E-31 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_16350 de193827cb098f128edcff3076ee842f 411 Pfam PF01610 Transposase 155 389 8.4E-62 T 31-10-2018 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain BRM88_16350 de193827cb098f128edcff3076ee842f 411 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 92 140 1.2E-8 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_06560 c52f0f2252673a35ba1a09e294946e34 282 Pfam PF03668 P-loop ATPase protein family 1 279 1.2E-92 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 BRM88_06560 c52f0f2252673a35ba1a09e294946e34 282 SUPERFAMILY SSF52540 2 150 1.82E-8 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_06560 c52f0f2252673a35ba1a09e294946e34 282 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 282 36.626 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 BRM88_06560 c52f0f2252673a35ba1a09e294946e34 282 PIRSF PIRSF005052 1 282 1.1E-107 T 31-10-2018 IPR005337 RapZ-like family GO:0005524 BRM88_01515 3d923b137b09c7f19c83e8f5725c81c6 264 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_01515 3d923b137b09c7f19c83e8f5725c81c6 264 SUPERFAMILY SSF52540 7 234 2.61E-61 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01515 3d923b137b09c7f19c83e8f5725c81c6 264 SMART SM00382 33 229 4.7E-9 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_01515 3d923b137b09c7f19c83e8f5725c81c6 264 Pfam PF00005 ABC transporter 24 171 1.3E-27 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_01515 3d923b137b09c7f19c83e8f5725c81c6 264 Gene3D G3DSA:3.40.50.300 8 259 2.2E-61 T 31-10-2018 BRM88_19420 581cf52cfe128ff060788330423ea405 183 Pfam PF00293 NUDIX domain 37 103 1.4E-7 T 31-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BRM88_19420 581cf52cfe128ff060788330423ea405 183 SUPERFAMILY SSF55811 8 172 5.63E-28 T 31-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BRM88_19420 581cf52cfe128ff060788330423ea405 183 Gene3D G3DSA:3.90.79.10 9 181 1.8E-31 T 31-10-2018 BRM88_00790 649868d034d2f718fd0153f67f3946d6 608 Pfam PF13482 RNase_H superfamily 417 591 3.3E-39 T 31-10-2018 IPR038720 YprB, ribonuclease H-like domain BRM88_00790 649868d034d2f718fd0153f67f3946d6 608 SUPERFAMILY SSF53098 369 594 4.0E-23 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_17105 86283a1c1fb82947fd20889114cb729a 388 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 33 3.1E-5 T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_17105 86283a1c1fb82947fd20889114cb729a 388 Pfam PF16074 Type IV Pilus-assembly protein W 243 383 6.4E-22 T 31-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 BRM88_17105 86283a1c1fb82947fd20889114cb729a 388 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 12 32 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_14780 2be18a0ee3d1b27adf70830eec001772 434 Pfam PF04286 Protein of unknown function (DUF445) 55 431 4.4E-104 T 31-10-2018 IPR007383 Protein of unknown function DUF445 BRM88_00575 b21726e9a23ac0fa313abc4f698f06c7 439 SUPERFAMILY SSF53098 8 403 9.1E-27 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_00575 b21726e9a23ac0fa313abc4f698f06c7 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_06635 3db03cf9c04a49b5a454edba526beef2 275 Pfam PF11306 Protein of unknown function (DUF3108) 43 272 1.1E-31 T 31-10-2018 IPR021457 Protein of unknown function DUF3108 BRM88_23025 751f177b83fbc07f8f39d52edb5204be 318 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 25 316 3.0E-100 T 31-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 BRM88_23025 751f177b83fbc07f8f39d52edb5204be 318 Pfam PF03812 2-keto-3-deoxygluconate permease 3 308 3.1E-110 T 31-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 BRM88_23025 751f177b83fbc07f8f39d52edb5204be 318 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 318 35.423 T 31-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 BRM88_23025 751f177b83fbc07f8f39d52edb5204be 318 TIGRFAM TIGR00793 kdgT: 2-keto-3-deoxygluconate transporter 1 309 2.1E-142 T 31-10-2018 IPR018395 2-keto-3-deoxygluconate permease, subgroup GO:0008643|GO:0015649|GO:0016021|GO:0046411 BRM88_13710 06ba706a86a60490843ac3885ba1b6ec 151 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 138 7.5E-28 T 31-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BRM88_13710 06ba706a86a60490843ac3885ba1b6ec 151 Pfam PF02050 Flagellar FliJ protein 19 137 2.6E-23 T 31-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BRM88_09490 206a01e323f2e7f11461670dfcdf19d4 214 Pfam PF03006 Haemolysin-III related 12 206 1.8E-36 T 31-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BRM88_09490 206a01e323f2e7f11461670dfcdf19d4 214 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 14 211 8.2E-63 T 31-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 BRM88_14615 90a4f467ad13ab95aa66c808a2c00b3e 328 SUPERFAMILY SSF52540 117 290 1.83E-36 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_14615 90a4f467ad13ab95aa66c808a2c00b3e 328 Gene3D G3DSA:3.40.50.300 109 315 3.1E-70 T 31-10-2018 BRM88_14615 90a4f467ad13ab95aa66c808a2c00b3e 328 Pfam PF02562 PhoH-like protein 112 315 2.0E-92 T 31-10-2018 IPR003714 PhoH-like protein GO:0005524 BRM88_24605 e5f56128f01eb93180918f824980a6f9 318 Pfam PF03741 Integral membrane protein TerC family 80 282 9.4E-55 T 31-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BRM88_24605 e5f56128f01eb93180918f824980a6f9 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 312 1.5E-120 T 31-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 BRM88_08960 06e31a7e108405d6aea53855b3969800 133 Pfam PF05488 PAAR motif 5 74 2.6E-21 T 31-10-2018 IPR008727 PAAR motif BRM88_08960 06e31a7e108405d6aea53855b3969800 133 Gene3D G3DSA:2.60.200.60 3 82 1.2E-11 T 31-10-2018 BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 Gene3D G3DSA:1.10.287.1080 7 130 3.6E-46 T 31-10-2018 BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 TIGRFAM TIGR00444 mazG: MazG family protein 16 267 1.3E-90 T 31-10-2018 IPR011551 NTP pyrophosphohydrolase MazG BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 33 106 4.9E-27 T 31-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 174 236 1.1E-6 T 31-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 Gene3D G3DSA:1.10.287.1080 137 272 3.4E-40 T 31-10-2018 BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 SUPERFAMILY SSF101386 144 246 4.8E-24 T 31-10-2018 BRM88_09370 72149a507d3cbdc657f8fad87e484c2f 339 SUPERFAMILY SSF101386 9 108 2.18E-23 T 31-10-2018 BRM88_04395 965ba6b5c927be554c6468e101d88cea 614 Pfam PF09709 CRISPR-associated protein (Cas_Csd1) 6 596 9.0E-173 T 31-10-2018 IPR010144 CRISPR-associated protein, Csd1-type BRM88_04395 965ba6b5c927be554c6468e101d88cea 614 TIGRFAM TIGR01863 cas_Csd1: CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG 3 599 2.3E-171 T 31-10-2018 IPR010144 CRISPR-associated protein, Csd1-type BRM88_13635 1bea45489a5e8f97cb1205b7abd090db 74 Gene3D G3DSA:1.10.1200.10 2 74 6.0E-10 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_13635 1bea45489a5e8f97cb1205b7abd090db 74 SUPERFAMILY SSF47336 5 71 1.5E-7 T 31-10-2018 IPR036736 ACP-like superfamily BRM88_20065 ccaa8b907a60e2dedc6969f035c8b2ce 404 SUPERFAMILY SSF53098 14 367 2.65E-31 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_20065 ccaa8b907a60e2dedc6969f035c8b2ce 404 Pfam PF01609 Transposase DDE domain 89 329 1.1E-24 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_07550 6de076754d086ec3a7fcebe84426f24f 188 Pfam PF11745 Protein of unknown function (DUF3304) 30 140 2.7E-29 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_18580 e36dc780c2715a95b8ec5506d5413f78 281 Pfam PF13503 Domain of unknown function (DUF4123) 50 137 5.6E-7 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_18025 603d9c011d02133bd9ea0d5218504e15 321 SMART SM01126 137 282 4.2E-49 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_18025 603d9c011d02133bd9ea0d5218504e15 321 Pfam PF12762 ISXO2-like transposase domain 137 282 5.9E-32 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_18025 603d9c011d02133bd9ea0d5218504e15 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_09925 9df1d77039fff4543e104bc170964687 372 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 17 348 3.4E-82 T 31-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BRM88_09925 9df1d77039fff4543e104bc170964687 372 SUPERFAMILY SSF51395 13 370 7.63E-119 T 31-10-2018 BRM88_09925 9df1d77039fff4543e104bc170964687 372 Gene3D G3DSA:3.20.20.70 15 372 7.6E-138 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_10720 06e6377cbd59b3ab6d31d2239ad9a52f 278 Pfam PF13349 Putative adhesin 124 227 2.4E-7 T 31-10-2018 IPR025164 Putative adhesin BRM88_10720 06e6377cbd59b3ab6d31d2239ad9a52f 278 Gene3D G3DSA:2.160.20.120 146 274 1.6E-8 T 31-10-2018 BRM88_08780 94d7dcb7c43dad919be683605ab52d14 106 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 11 32 - T 31-10-2018 IPR013087 Zinc finger C2H2-type GO:0003676 BRM88_08780 94d7dcb7c43dad919be683605ab52d14 106 Pfam PF04606 Ogr/Delta-like zinc finger 10 52 5.0E-6 T 31-10-2018 IPR007684 Zinc finger, Ogr/Delta-type BRM88_03815 7fbf31705d39b6b2c18c27420b6c7964 132 Pfam PF04994 TfoX C-terminal domain 5 78 1.7E-26 T 31-10-2018 IPR007077 TfoX, C-terminal BRM88_03815 7fbf31705d39b6b2c18c27420b6c7964 132 Gene3D G3DSA:1.10.150.20 2 85 9.1E-21 T 31-10-2018 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 486 626 1.7E-32 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00283 426 659 2.3E-68 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 Gene3D G3DSA:1.10.287.950 377 661 8.9E-71 T 31-10-2018 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 Gene3D G3DSA:1.20.120.1530 197 286 1.4E-42 T 31-10-2018 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 Gene3D G3DSA:1.20.120.1530 287 376 1.2E-40 T 31-10-2018 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 Gene3D G3DSA:1.20.120.1530 50 196 9.9E-46 T 31-10-2018 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 517 544 7.5E-27 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 546 575 7.5E-27 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 7.5E-27 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00304 100 157 3.4 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00304 586 639 120.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00304 190 247 28.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00304 373 425 5.6E-5 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SMART SM00304 284 337 57.0 T 31-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BRM88_07640 3cb88b8610c928538680a5910cc22d99 718 SUPERFAMILY SSF58104 393 660 2.49E-62 T 31-10-2018 BRM88_17175 c25545c0e345d3b530d6fcc860d94dfd 346 PIRSF PIRSF028415 1 346 7.1E-210 T 31-10-2018 IPR014545 Uncharacterised conserved protein UCP028415 BRM88_17175 c25545c0e345d3b530d6fcc860d94dfd 346 Pfam PF10030 Uncharacterized protein conserved in bacteria (DUF2272) 78 300 9.5E-103 T 31-10-2018 IPR019262 Domain of unknown function DUF2272 BRM88_23955 23d68034ade35175fdc37c5bb5dd8aad 393 Pfam PF00266 Aminotransferase class-V 68 361 1.5E-22 T 31-10-2018 IPR000192 Aminotransferase class V domain BRM88_23955 23d68034ade35175fdc37c5bb5dd8aad 393 Gene3D G3DSA:3.40.640.10 41 305 1.4E-56 T 31-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BRM88_23955 23d68034ade35175fdc37c5bb5dd8aad 393 SUPERFAMILY SSF53383 15 390 1.26E-53 T 31-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BRM88_23955 23d68034ade35175fdc37c5bb5dd8aad 393 Gene3D G3DSA:3.90.1150.10 27 382 1.4E-56 T 31-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 Gene3D G3DSA:3.40.50.300 2 228 1.4E-63 T 31-10-2018 BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 SUPERFAMILY SSF52540 3 225 6.02E-65 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 4 216 7.5E-84 T 31-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 Pfam PF00005 ABC transporter 20 167 9.7E-31 T 31-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 SMART SM00382 29 216 6.4E-7 T 31-10-2018 IPR003593 AAA+ ATPase domain BRM88_22860 16150b774ddd9027ff2e41fab507e11c 228 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 31-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BRM88_13160 b64e214e185adc2305f89ed6e3e4d5d4 373 SUPERFAMILY SSF50956 58 368 4.45E-34 T 31-10-2018 BRM88_13160 b64e214e185adc2305f89ed6e3e4d5d4 373 Gene3D G3DSA:2.120.10.30 43 372 6.5E-15 T 31-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BRM88_13160 b64e214e185adc2305f89ed6e3e4d5d4 373 Pfam PF02333 Phytase 230 345 2.3E-6 T 31-10-2018 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 BRM88_04425 a4d05e5fbf5a06dc61bda8fca7872d41 169 Pfam PF02620 Uncharacterized ACR, COG1399 61 167 9.5E-12 T 31-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD BRM88_00840 e93cf6136bfdbdf790c0bc5c48659842 126 Pfam PF11720 Peptidase inhibitor I78 family 62 126 2.8E-23 T 31-10-2018 IPR021719 Proteinase inhibitor I78 BRM88_00840 e93cf6136bfdbdf790c0bc5c48659842 126 Gene3D G3DSA:3.30.10.10 60 125 1.6E-21 T 31-10-2018 BRM88_07245 230965e80e7442a321bb19ef63ef314c 141 SMART SM00411 44 141 1.2E-4 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_07245 230965e80e7442a321bb19ef63ef314c 141 Gene3D G3DSA:4.10.520.10 43 141 6.6E-13 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_07245 230965e80e7442a321bb19ef63ef314c 141 SUPERFAMILY SSF47729 44 139 3.83E-12 T 31-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BRM88_07245 230965e80e7442a321bb19ef63ef314c 141 Pfam PF00216 Bacterial DNA-binding protein 45 139 2.2E-13 T 31-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BRM88_07525 309bde7c5f2b0b894a9237383d016b2a 633 SUPERFAMILY SSF69255 114 208 8.63E-25 T 31-10-2018 BRM88_07525 309bde7c5f2b0b894a9237383d016b2a 633 Gene3D G3DSA:2.40.50.230 108 212 3.2E-37 T 31-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BRM88_07525 309bde7c5f2b0b894a9237383d016b2a 633 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 278 382 9.1E-34 T 31-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain BRM88_07525 309bde7c5f2b0b894a9237383d016b2a 633 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 443 600 1.4E-33 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_17785 8702696a6807da1abc568d7c82e918d3 77 Pfam PF04070 Domain of unknown function (DUF378) 2 57 1.4E-18 T 31-10-2018 IPR007211 Protein of unknown function DUF378 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 Pfam PF00290 Tryptophan synthase alpha chain 8 261 2.5E-83 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 8.1E-71 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 264 34.395 T 31-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 31-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 Gene3D G3DSA:3.20.20.70 1 268 7.5E-96 T 31-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BRM88_17360 f1aa1fe215f12874c8ab2f10d4cf629b 268 SUPERFAMILY SSF51366 1 244 2.07E-83 T 31-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BRM88_21225 f05abec58d449db17db2fdeb44144011 166 Gene3D G3DSA:3.40.630.30 8 156 5.2E-30 T 31-10-2018 BRM88_21225 f05abec58d449db17db2fdeb44144011 166 Pfam PF13673 Acetyltransferase (GNAT) domain 78 155 6.9E-8 T 31-10-2018 IPR000182 GNAT domain BRM88_21225 f05abec58d449db17db2fdeb44144011 166 SUPERFAMILY SSF55729 10 160 1.46E-25 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_07310 61bbb1c9267ee41c599a17395effda15 190 Gene3D G3DSA:1.10.340.30 3 167 8.0E-44 T 31-10-2018 BRM88_07310 61bbb1c9267ee41c599a17395effda15 190 SUPERFAMILY SSF48150 4 167 7.26E-53 T 31-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BRM88_07310 61bbb1c9267ee41c599a17395effda15 190 Pfam PF03352 Methyladenine glycosylase 11 119 2.7E-40 T 31-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 BRM88_18900 3b279589dfe9aeea413c8e4529ecc666 672 Gene3D G3DSA:1.10.1370.30 404 651 1.6E-6 T 31-10-2018 BRM88_18900 3b279589dfe9aeea413c8e4529ecc666 672 SUPERFAMILY SSF55486 40 655 3.13E-185 T 31-10-2018 BRM88_18900 3b279589dfe9aeea413c8e4529ecc666 672 Pfam PF01401 Angiotensin-converting enzyme 40 654 3.6E-188 T 31-10-2018 IPR001548 Peptidase M2, peptidyl-dipeptidase A GO:0006508|GO:0008237|GO:0008241|GO:0016020 BRM88_16665 915db96c047b7966764707e86f1fc91c 143 Gene3D G3DSA:2.170.130.10 48 138 4.8E-12 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_16665 915db96c047b7966764707e86f1fc91c 143 SUPERFAMILY SSF56935 48 133 1.79E-11 T 31-10-2018 BRM88_16665 915db96c047b7966764707e86f1fc91c 143 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 133 7.8E-8 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_00145 467159e3cdb6730f0059be7cad4700c4 340 Gene3D G3DSA:3.40.1190.20 3 340 1.0E-111 T 31-10-2018 IPR029056 Ribokinase-like BRM88_00145 467159e3cdb6730f0059be7cad4700c4 340 SUPERFAMILY SSF53613 2 329 6.08E-71 T 31-10-2018 IPR029056 Ribokinase-like BRM88_00145 467159e3cdb6730f0059be7cad4700c4 340 Pfam PF00294 pfkB family carbohydrate kinase 5 312 2.0E-34 T 31-10-2018 IPR011611 Carbohydrate kinase PfkB BRM88_07875 c958dcc6fe0b5ba4d0050ebd76ffd2e6 184 Gene3D G3DSA:3.40.50.360 5 182 4.3E-53 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_07875 c958dcc6fe0b5ba4d0050ebd76ffd2e6 184 Pfam PF03358 NADPH-dependent FMN reductase 5 148 5.0E-39 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BRM88_07875 c958dcc6fe0b5ba4d0050ebd76ffd2e6 184 SUPERFAMILY SSF52218 5 175 6.2E-48 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_16975 9ea55ed1971e738e750a8665a34305c5 358 Pfam PF01757 Acyltransferase family 26 339 5.2E-23 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BRM88_05280 47edb16cdaa11357e58a1b3b022e47b8 716 Gene3D G3DSA:3.40.50.1820 157 341 1.2E-5 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05280 47edb16cdaa11357e58a1b3b022e47b8 716 SUPERFAMILY SSF53474 197 282 2.76E-9 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05280 47edb16cdaa11357e58a1b3b022e47b8 716 Pfam PF11678 Protein of unknown function (DUF3274) 400 691 4.1E-70 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 SMART SM00905 4 114 2.8E-47 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 1.3E-32 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 Pfam PF02152 Dihydroneopterin aldolase 4 113 1.7E-30 T 31-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 114 3.3E-24 T 31-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 SUPERFAMILY SSF55620 1 116 5.56E-36 T 31-10-2018 BRM88_22005 6b60d19700abaacfea5876ddb8e5536e 118 Gene3D G3DSA:3.30.1130.10 1 117 9.7E-41 T 31-10-2018 BRM88_02740 5d7c2b708f3b0928d91477f5b8965b92 133 Pfam PF12146 Serine aminopeptidase, S33 38 132 1.0E-23 T 31-10-2018 IPR022742 Serine aminopeptidase, S33 BRM88_02740 5d7c2b708f3b0928d91477f5b8965b92 133 SUPERFAMILY SSF53474 47 129 2.17E-14 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_02740 5d7c2b708f3b0928d91477f5b8965b92 133 Gene3D G3DSA:3.40.50.1820 20 132 1.2E-15 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01410 7eddaff0228aaa770f264af99dc0b00e 200 Gene3D G3DSA:1.20.910.10 6 196 7.2E-43 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_01410 7eddaff0228aaa770f264af99dc0b00e 200 SUPERFAMILY SSF48613 11 194 5.68E-49 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_01410 7eddaff0228aaa770f264af99dc0b00e 200 Pfam PF01126 Heme oxygenase 13 194 1.6E-11 T 31-10-2018 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|MetaCyc: PWY-5874|Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_11125 4012daa16ceb84c02f1b87f33879d870 361 Pfam PF01650 Peptidase C13 family 74 284 3.1E-48 T 31-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 BRM88_11125 4012daa16ceb84c02f1b87f33879d870 361 SUPERFAMILY SSF52129 128 249 7.32E-6 T 31-10-2018 IPR029030 Caspase-like domain superfamily BRM88_02250 dddd096abafcaeb41c3abcde88aff152 243 Pfam PF00156 Phosphoribosyl transferase domain 198 238 6.6E-7 T 31-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BRM88_02250 dddd096abafcaeb41c3abcde88aff152 243 SUPERFAMILY SSF53271 66 242 9.33E-32 T 31-10-2018 IPR029057 Phosphoribosyltransferase-like BRM88_02250 dddd096abafcaeb41c3abcde88aff152 243 Gene3D G3DSA:3.40.50.2020 89 243 3.7E-17 T 31-10-2018 BRM88_06615 0e8b897c963cf2e3ffafb198b5c1b4e1 15 TIGRFAM TIGR01053 LSD1: zinc finger domain, LSD1 subclass 4 14 0.0017 T 31-10-2018 IPR005735 Zinc finger, LSD1-type BRM88_10520 7ff714e45d7814362f10c0ddf82ad8ce 143 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 134 2.9E-26 T 31-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 BRM88_10520 7ff714e45d7814362f10c0ddf82ad8ce 143 SUPERFAMILY SSF55961 1 140 1.3E-31 T 31-10-2018 BRM88_10520 7ff714e45d7814362f10c0ddf82ad8ce 143 Gene3D G3DSA:3.30.530.20 1 141 5.2E-26 T 31-10-2018 IPR023393 START-like domain superfamily BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 Gene3D G3DSA:3.40.50.300 7 180 7.1E-64 T 31-10-2018 BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.8E-70 T 31-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 35.625 T 31-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 SUPERFAMILY SSF52540 2 187 2.09E-60 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 SMART SM00072 2 184 4.2E-58 T 31-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 Pfam PF00625 Guanylate kinase 4 180 7.5E-47 T 31-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BRM88_05840 cdfac7b807b04450891d77f6553396bc 203 Gene3D G3DSA:3.30.63.10 34 93 7.1E-64 T 31-10-2018 BRM88_00890 a74829e8a6e9323049b258f62c2f0206 460 Pfam PF05598 Transposase domain (DUF772) 59 132 4.1E-16 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_00890 a74829e8a6e9323049b258f62c2f0206 460 Pfam PF01609 Transposase DDE domain 283 418 1.2E-8 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_16785 93fe5fd4531e96d22e3187aa6c8dd464 420 Pfam PF01266 FAD dependent oxidoreductase 55 395 3.2E-56 T 31-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BRM88_16785 93fe5fd4531e96d22e3187aa6c8dd464 420 SUPERFAMILY SSF54373 256 356 5.36E-14 T 31-10-2018 BRM88_16785 93fe5fd4531e96d22e3187aa6c8dd464 420 SUPERFAMILY SSF51905 54 415 6.73E-47 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_16785 93fe5fd4531e96d22e3187aa6c8dd464 420 Gene3D G3DSA:3.30.9.10 132 356 4.5E-69 T 31-10-2018 BRM88_16785 93fe5fd4531e96d22e3187aa6c8dd464 420 Gene3D G3DSA:3.50.50.60 55 395 4.5E-69 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_19310 b37c77f963688db1e03f9bd3dc5e57de 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 195 2.8E-48 T 31-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 BRM88_19310 b37c77f963688db1e03f9bd3dc5e57de 198 Gene3D G3DSA:3.40.50.360 1 197 3.5E-62 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_19310 b37c77f963688db1e03f9bd3dc5e57de 198 SUPERFAMILY SSF52218 1 195 3.41E-57 T 31-10-2018 IPR029039 Flavoprotein-like superfamily BRM88_19310 b37c77f963688db1e03f9bd3dc5e57de 198 Pfam PF03358 NADPH-dependent FMN reductase 64 129 2.7E-9 T 31-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BRM88_08855 c5721cf3fc1fdf89a470c75a10f2e6fe 296 Pfam PF04865 Baseplate J-like protein 113 255 1.9E-26 T 31-10-2018 IPR006949 Baseplate protein J-like BRM88_08855 c5721cf3fc1fdf89a470c75a10f2e6fe 296 PIRSF PIRSF020481 4 296 3.2E-116 T 31-10-2018 IPR014507 Baseplate assembly protein J, predicted BRM88_03985 987b52f7bba2ef508442d95d3ad1a16c 302 SUPERFAMILY SSF51735 3 297 1.98E-95 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_03985 987b52f7bba2ef508442d95d3ad1a16c 302 Pfam PF04321 RmlD substrate binding domain 3 297 3.4E-109 T 31-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 BRM88_03985 987b52f7bba2ef508442d95d3ad1a16c 302 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 4 296 1.1E-105 T 31-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 BRM88_03985 987b52f7bba2ef508442d95d3ad1a16c 302 Gene3D G3DSA:3.90.25.10 168 292 3.3E-108 T 31-10-2018 BRM88_03985 987b52f7bba2ef508442d95d3ad1a16c 302 Gene3D G3DSA:3.40.50.720 4 284 3.3E-108 T 31-10-2018 BRM88_10595 30ac0b8837020b864f362bbab69a8b9c 308 Pfam PF02321 Outer membrane efflux protein 124 298 1.8E-18 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_10595 30ac0b8837020b864f362bbab69a8b9c 308 Gene3D G3DSA:1.20.1600.10 2 300 1.4E-34 T 31-10-2018 BRM88_10595 30ac0b8837020b864f362bbab69a8b9c 308 SUPERFAMILY SSF56954 7 298 1.09E-29 T 31-10-2018 BRM88_17620 1635aab27d0dc4fe03cfe3203f548574 154 Pfam PF09685 Domain of unknown function (DUF4870) 48 153 2.2E-29 T 31-10-2018 IPR019109 Protein of unknown function DUF4870 BRM88_09780 c09b56ab65731d8bca65d164d61a0754 340 SUPERFAMILY SSF56281 19 329 1.74E-58 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_09780 c09b56ab65731d8bca65d164d61a0754 340 Gene3D G3DSA:3.60.15.10 24 203 7.1E-17 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_09780 c09b56ab65731d8bca65d164d61a0754 340 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 16 339 9.9E-145 T 31-10-2018 IPR026360 Putative exonuclease, DNA ligase-associated BRM88_08930 8ee2411e1d4909bf2a461c0a88845192 81 Pfam PF10122 Mu-like prophage protein Com 1 51 2.5E-33 T 31-10-2018 IPR019294 Translational regulator Com BRM88_11510 68074395863d96300d1ddb4e4c730d67 194 SUPERFAMILY SSF53098 7 181 1.9E-45 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_11510 68074395863d96300d1ddb4e4c730d67 194 Pfam PF00929 Exonuclease 12 173 1.8E-26 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_11510 68074395863d96300d1ddb4e4c730d67 194 SMART SM00479 10 183 9.0E-14 T 31-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BRM88_11510 68074395863d96300d1ddb4e4c730d67 194 Hamap MF_00045 Oligoribonuclease [orn]. 6 184 40.952 T 31-10-2018 IPR022894 Oligoribonuclease GO:0000175 BRM88_11510 68074395863d96300d1ddb4e4c730d67 194 Gene3D G3DSA:3.30.420.10 1 193 4.4E-73 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_05875 05b619979d09d3c0d6adcc35f4c88aac 312 Gene3D G3DSA:3.90.245.10 6 310 4.9E-93 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_05875 05b619979d09d3c0d6adcc35f4c88aac 312 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 6 302 5.8E-79 T 31-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BRM88_05875 05b619979d09d3c0d6adcc35f4c88aac 312 SUPERFAMILY SSF53590 4 309 2.49E-86 T 31-10-2018 IPR036452 Ribonucleoside hydrolase-like BRM88_10010 9507a6284a73b13693460e61c937127d 181 Pfam PF11086 Protein of unknown function (DUF2878) 4 158 1.7E-38 T 31-10-2018 IPR021306 Protein of unknown function DUF2878 BRM88_06445 cc835803c0c9dbee067f61591be92e0b 250 Pfam PF07277 SapC 7 232 1.5E-64 T 31-10-2018 IPR010836 SapC BRM88_08700 037f63c6c5175618ed9e12dc9316f175 458 Pfam PF05598 Transposase domain (DUF772) 59 132 5.0E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_08700 037f63c6c5175618ed9e12dc9316f175 458 Pfam PF01609 Transposase DDE domain 281 416 2.9E-8 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_19300 029e1a45083c5040d6fd5e743f86890c 200 Gene3D G3DSA:3.40.30.10 27 196 6.8E-37 T 31-10-2018 BRM88_19300 029e1a45083c5040d6fd5e743f86890c 200 Pfam PF00578 AhpC/TSA family 65 178 2.2E-16 T 31-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BRM88_19300 029e1a45083c5040d6fd5e743f86890c 200 ProSitePatterns PS00194 Thioredoxin family active site. 90 108 - T 31-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BRM88_19300 029e1a45083c5040d6fd5e743f86890c 200 SUPERFAMILY SSF52833 11 192 4.73E-33 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_04725 3c69396d01d99e238ccee66a92a0baeb 153 Pfam PF07494 Two component regulator propeller 44 66 8.8E-4 T 31-10-2018 IPR011110 Two component regulator propeller BRM88_04725 3c69396d01d99e238ccee66a92a0baeb 153 Gene3D G3DSA:2.130.10.10 35 153 3.7E-15 T 31-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BRM88_04725 3c69396d01d99e238ccee66a92a0baeb 153 SUPERFAMILY SSF63829 28 108 7.19E-5 T 31-10-2018 BRM88_13260 3bd0d536c27183854a18816b8fa0c44d 491 Pfam PF05598 Transposase domain (DUF772) 87 160 5.6E-17 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13260 3bd0d536c27183854a18816b8fa0c44d 491 Pfam PF01609 Transposase DDE domain 309 446 7.9E-9 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_09130 ae30154efa74226812d7129863eebce1 678 Gene3D G3DSA:1.10.287.950 350 677 5.1E-64 T 31-10-2018 BRM88_09130 ae30154efa74226812d7129863eebce1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 435 464 6.3E-19 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_09130 ae30154efa74226812d7129863eebce1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 541 570 6.3E-19 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_09130 ae30154efa74226812d7129863eebce1 678 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 539 6.3E-19 T 31-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BRM88_09130 ae30154efa74226812d7129863eebce1 678 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 459 642 3.2E-42 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_09130 ae30154efa74226812d7129863eebce1 678 SUPERFAMILY SSF58104 376 676 8.72E-69 T 31-10-2018 BRM88_09130 ae30154efa74226812d7129863eebce1 678 SMART SM00283 414 675 4.5E-86 T 31-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BRM88_03975 d06a16c75a73b8a189e03998c957955d 295 Gene3D G3DSA:3.90.550.10 1 294 2.7E-83 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03975 d06a16c75a73b8a189e03998c957955d 295 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 5 289 1.6E-155 T 31-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 BRM88_03975 d06a16c75a73b8a189e03998c957955d 295 Pfam PF00483 Nucleotidyl transferase 5 241 6.9E-72 T 31-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BRM88_03975 d06a16c75a73b8a189e03998c957955d 295 SUPERFAMILY SSF53448 4 288 6.31E-90 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_18850 5b7214dd89704868d669803e8167cf09 198 Gene3D G3DSA:3.40.630.30 1 162 1.3E-13 T 31-10-2018 BRM88_18850 5b7214dd89704868d669803e8167cf09 198 PIRSF PIRSF028520 1 164 9.5E-82 T 31-10-2018 IPR016890 Uncharacterised conserved protein UCP028520 BRM88_18850 5b7214dd89704868d669803e8167cf09 198 SUPERFAMILY SSF55729 2 152 1.05E-15 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_18850 5b7214dd89704868d669803e8167cf09 198 Pfam PF00583 Acetyltransferase (GNAT) family 27 125 1.1E-6 T 31-10-2018 IPR000182 GNAT domain BRM88_17250 2c91281e0ae09b869d800cd21b55a67d 363 Pfam PF00146 NADH dehydrogenase 31 351 6.6E-117 T 31-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17250 2c91281e0ae09b869d800cd21b55a67d 363 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 229 242 - T 31-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17250 2c91281e0ae09b869d800cd21b55a67d 363 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 24 357 23.997 T 31-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BRM88_17485 216a39606100a88b104dcb03aae9e06f 191 Pfam PF01738 Dienelactone hydrolase family 1 189 7.4E-32 T 31-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BRM88_17485 216a39606100a88b104dcb03aae9e06f 191 SUPERFAMILY SSF53474 1 191 9.17E-26 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_17485 216a39606100a88b104dcb03aae9e06f 191 Gene3D G3DSA:3.40.50.1820 1 188 4.1E-32 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_12915 6d7e71a396c30b7931b67c7966ead02b 168 Gene3D G3DSA:3.40.630.30 1 166 3.9E-41 T 31-10-2018 BRM88_12915 6d7e71a396c30b7931b67c7966ead02b 168 SUPERFAMILY SSF55729 5 156 3.49E-24 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_12915 6d7e71a396c30b7931b67c7966ead02b 168 Pfam PF00583 Acetyltransferase (GNAT) family 29 128 1.2E-10 T 31-10-2018 IPR000182 GNAT domain BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 Gene3D G3DSA:1.10.3860.10 1 432 2.6E-117 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 SUPERFAMILY SSF118215 12 415 2.48E-101 T 31-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 206 225 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 370 390 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 343 362 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 159 181 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 308 334 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 78 103 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 PRINTS PR00173 Glutamate-aspartate symporter signature 10 30 2.9E-18 T 31-10-2018 BRM88_17590 58e5f4ef319ad6aae57677e67e42ece7 439 Pfam PF00375 Sodium:dicarboxylate symporter family 13 415 5.2E-112 T 31-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BRM88_08050 64acd17d8f061b1fad07611615eebca9 421 Pfam PF00999 Sodium/hydrogen exchanger family 17 406 6.5E-55 T 31-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BRM88_08050 64acd17d8f061b1fad07611615eebca9 421 Gene3D G3DSA:1.20.1530.20 7 413 2.4E-96 T 31-10-2018 IPR038770 Sodium/solute symporter superfamily BRM88_22410 91f722fca66e0c3f406b76d75457a6ad 198 SUPERFAMILY SSF56935 24 133 2.23E-9 T 31-10-2018 BRM88_22410 91f722fca66e0c3f406b76d75457a6ad 198 Gene3D G3DSA:2.40.160.10 14 197 2.8E-9 T 31-10-2018 IPR023614 Porin domain superfamily BRM88_22410 91f722fca66e0c3f406b76d75457a6ad 198 TIGRFAM TIGR04273 Y_sulf_Ax21: sulfation-dependent quorum factor, Ax21 family 6 198 7.4E-98 T 31-10-2018 IPR026364 Ax21 family BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 Pfam PF14718 Soluble lytic murein transglycosylase L domain 423 481 5.5E-10 T 31-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 Gene3D G3DSA:1.25.20.10 50 404 2.0E-80 T 31-10-2018 BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 SUPERFAMILY SSF53955 499 657 5.55E-44 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 Pfam PF01464 Transglycosylase SLT domain 502 614 2.1E-23 T 31-10-2018 IPR008258 Transglycosylase SLT domain 1 BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 SUPERFAMILY SSF48435 50 495 5.89E-101 T 31-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 BRM88_04115 96037ffda43ba77f160678d7cff02adb 681 Gene3D G3DSA:1.10.530.10 492 652 4.8E-43 T 31-10-2018 BRM88_03380 3954e57a0ae647942ec4187a434c33fe 88 Pfam PF11730 Protein of unknown function (DUF3297) 6 76 9.0E-37 T 31-10-2018 IPR021724 Protein of unknown function DUF3297 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 348 1.2E-121 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 9 354 1.5E-136 T 31-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 1.2E-37 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 1.2E-37 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 1.2E-37 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 1.2E-37 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 303 324 1.2E-37 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 Gene3D G3DSA:3.40.1690.10 218 355 6.6E-56 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BRM88_13775 e2fbb7d4e02b33308c3a85323bf1ad86 376 SUPERFAMILY SSF160544 245 352 9.42E-40 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BRM88_02320 2c90b4eb6648be49e3b0a5212fc46024 445 Pfam PF00723 Glycosyl hydrolases family 15 224 443 1.6E-37 T 31-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 BRM88_02320 2c90b4eb6648be49e3b0a5212fc46024 445 Gene3D G3DSA:1.50.10.10 218 445 1.7E-49 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_02320 2c90b4eb6648be49e3b0a5212fc46024 445 SUPERFAMILY SSF48208 203 444 1.89E-57 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_06520 202cbb38b9a2a6199a6b0880babec0db 466 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 435 3.6E-149 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BRM88_06520 202cbb38b9a2a6199a6b0880babec0db 466 PIRSF PIRSF006446 1 457 1.4E-180 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 629 660 5.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 323 354 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 493 524 4.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 939 970 1.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1007 1038 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 459 490 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 837 868 5.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 871 902 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1075 1105 7.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 289 320 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1041 1072 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 425 456 3.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 803 834 5.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 527 558 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 357 388 7.0E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 735 766 2.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1108 1139 1.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 769 800 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 391 422 1.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 663 693 1.3E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1177 1201 0.055 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 905 936 1.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 973 1004 9.8E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 561 592 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 595 626 7.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 696 724 3.1E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16105 228b0988f6c555ee71a416a9e1818b94 1446 Pfam PF03377 TAL effector repeat 1142 1170 6.0E-10 T 31-10-2018 IPR005042 TAL effector repeat BRM88_09430 85c2f645da8fbc8130079d683be70e39 117 Pfam PF06993 Protein of unknown function (DUF1304) 11 114 6.9E-39 T 31-10-2018 IPR009732 Protein of unknown function DUF1304 BRM88_03540 113098532d96879cfea7b9328e2e1700 283 SUPERFAMILY SSF53474 23 275 5.59E-16 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_03540 113098532d96879cfea7b9328e2e1700 283 Gene3D G3DSA:3.40.50.1820 17 273 2.4E-22 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_13750 f7aa6a322436b7197f4bfbc9afd13cf4 89 PIRSF PIRSF004669 1 89 5.1E-23 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_13750 f7aa6a322436b7197f4bfbc9afd13cf4 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 8.0E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_13750 f7aa6a322436b7197f4bfbc9afd13cf4 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 8.0E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_13750 f7aa6a322436b7197f4bfbc9afd13cf4 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 8.0E-15 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_13750 f7aa6a322436b7197f4bfbc9afd13cf4 89 Pfam PF01313 Bacterial export proteins, family 3 10 77 4.4E-20 T 31-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BRM88_21030 050080f68ab6b225be8c763958cac656 126 Pfam PF05433 Glycine zipper 2TM domain 66 107 2.4E-10 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BRM88_13335 63c73116171341ed35e12b09a63acc5d 286 Pfam PF13464 Domain of unknown function (DUF4115) 202 274 2.2E-16 T 31-10-2018 IPR025194 Domain of unknown function DUF4115 BRM88_13335 63c73116171341ed35e12b09a63acc5d 286 Pfam PF13413 Helix-turn-helix domain 20 79 1.9E-20 T 31-10-2018 BRM88_13335 63c73116171341ed35e12b09a63acc5d 286 Gene3D G3DSA:1.10.260.40 8 112 1.2E-20 T 31-10-2018 BRM88_16960 b22c337b9c46b54b0102a3235a90a5d2 497 Pfam PF13440 Polysaccharide biosynthesis protein 43 335 7.4E-78 T 31-10-2018 BRM88_19955 f35a714abedd0cc186985032aa3428d6 270 Gene3D G3DSA:3.40.50.1820 2 241 6.7E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_19955 f35a714abedd0cc186985032aa3428d6 270 SUPERFAMILY SSF53474 8 188 1.42E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_06000 37046cb9780885af24aadacbcd4cec27 238 SUPERFAMILY SSF51261 106 231 8.37E-31 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_06000 37046cb9780885af24aadacbcd4cec27 238 Gene3D G3DSA:2.70.70.10 96 235 2.2E-42 T 31-10-2018 IPR011055 Duplicated hybrid motif BRM88_06000 37046cb9780885af24aadacbcd4cec27 238 Pfam PF01551 Peptidase family M23 120 226 3.1E-22 T 31-10-2018 IPR016047 Peptidase M23 BRM88_05955 457bea01e30c1389021012ad0b1a12c1 153 Pfam PF14316 Domain of unknown function (DUF4381) 7 137 3.6E-32 T 31-10-2018 IPR025489 Protein of unknown function (DUF4381 BRM88_24160 b1b09abc988f9b10c0cea7cdc4970b1e 575 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 67 492 1.9E-58 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BRM88_24160 b1b09abc988f9b10c0cea7cdc4970b1e 575 Pfam PF00474 Sodium:solute symporter family 67 492 6.8E-108 T 31-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BRM88_24160 b1b09abc988f9b10c0cea7cdc4970b1e 575 Gene3D G3DSA:1.20.1730.10 54 570 9.8E-58 T 31-10-2018 IPR038377 Sodium/glucose symporter superfamily BRM88_24160 b1b09abc988f9b10c0cea7cdc4970b1e 575 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 182 207 - T 31-10-2018 IPR018212 Sodium/solute symporter, conserved site BRM88_07235 d982204853552250c12cfe1b7c1ab4a2 113 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 15 105 1.6E-22 T 31-10-2018 IPR024476 Protein of unknown function DUF3861 BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 725 756 8.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 657 688 4.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 759 790 2.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 351 382 9.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 929 960 4.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 589 620 1.7E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 861 892 6.3E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 555 586 3.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 963 992 4.3E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 487 518 8.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 419 450 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 521 551 2.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 385 416 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 691 722 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 895 926 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 827 858 5.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 623 654 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 453 484 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 317 348 1.6E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11085 5b1c531e41c7247b5f0b2fbe592e881b 1268 Pfam PF03377 TAL effector repeat 793 824 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_24460 81eabb5ae2d1fcaeb25c49fd2f335601 175 Gene3D G3DSA:1.20.1600.10 53 162 2.2E-23 T 31-10-2018 BRM88_24460 81eabb5ae2d1fcaeb25c49fd2f335601 175 Pfam PF02321 Outer membrane efflux protein 54 155 2.1E-10 T 31-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BRM88_24460 81eabb5ae2d1fcaeb25c49fd2f335601 175 SUPERFAMILY SSF56954 52 164 5.89E-20 T 31-10-2018 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 480 492 1.7E-5 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 501 517 1.7E-5 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 574 585 1.7E-5 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 Pfam PF01431 Peptidase family M13 473 663 8.5E-42 T 31-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 SUPERFAMILY SSF55486 43 670 3.52E-139 T 31-10-2018 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 Gene3D G3DSA:3.40.390.10 43 670 7.5E-141 T 31-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 Gene3D G3DSA:1.10.1380.10 68 457 7.5E-141 T 31-10-2018 BRM88_17525 61ca9621a20137fa8ca4d396319953cc 671 Pfam PF05649 Peptidase family M13 44 418 1.1E-65 T 31-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 BRM88_18190 ac4cb1496a6ee056fa691bb1b4a808f3 57 SUPERFAMILY SSF51430 1 49 2.62E-6 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_18190 ac4cb1496a6ee056fa691bb1b4a808f3 57 Gene3D G3DSA:3.20.20.100 1 57 1.2E-6 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_09530 f08ec3f1a66992029bd1657e5448602f 129 Pfam PF05901 Excalibur calcium-binding domain 91 123 1.1E-5 T 31-10-2018 IPR008613 Excalibur calcium-binding domain BRM88_06400 0a5298357af8f1f29ea02a93b283774e 134 Pfam PF03994 Domain of Unknown Function (DUF350) 15 68 7.6E-13 T 31-10-2018 IPR007140 Protein of unknown function DUF350 BRM88_06400 0a5298357af8f1f29ea02a93b283774e 134 Pfam PF03994 Domain of Unknown Function (DUF350) 80 132 2.2E-10 T 31-10-2018 IPR007140 Protein of unknown function DUF350 BRM88_17705 4d756f8f09091069068d2f9b54bba418 157 Pfam PF05787 Bacterial protein of unknown function (DUF839) 11 55 8.9E-9 T 31-10-2018 IPR008557 Protein of unknown function DUF839 BRM88_20705 c1f539f8f429fe7139b5100ed0ae010a 231 Pfam PF01988 VIT family 17 224 2.7E-55 T 31-10-2018 IPR008217 Ccc1 family BRM88_19460 25bbc7767a0a17a8f78da818baf51e18 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_19460 25bbc7767a0a17a8f78da818baf51e18 318 Pfam PF00665 Integrase core domain 173 266 1.2E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_19460 25bbc7767a0a17a8f78da818baf51e18 318 Gene3D G3DSA:3.30.420.10 156 315 1.4E-5 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_19460 25bbc7767a0a17a8f78da818baf51e18 318 SUPERFAMILY SSF53098 163 307 2.58E-22 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_20285 7b8c52f1d6a0391c3a7f75208682e5ad 181 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 181 8.2E-56 T 31-10-2018 IPR018636 Protein of unknown function DUF2058 BRM88_04095 acd3ce0afd7190dd8f38862d6d89e717 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_04095 acd3ce0afd7190dd8f38862d6d89e717 439 SUPERFAMILY SSF53098 18 403 9.1E-27 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_00670 601b3ae89c66854488259186002c6668 315 Pfam PF00665 Integrase core domain 156 258 2.2E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_00670 601b3ae89c66854488259186002c6668 315 Gene3D G3DSA:3.30.420.10 155 311 3.3E-6 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_00670 601b3ae89c66854488259186002c6668 315 SUPERFAMILY SSF53098 156 301 6.68E-23 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04615 68e7fa3b32abc9e7377dcb0fb277486c 158 SUPERFAMILY SSF49764 22 146 4.88E-39 T 31-10-2018 IPR008978 HSP20-like chaperone BRM88_04615 68e7fa3b32abc9e7377dcb0fb277486c 158 Pfam PF00011 Hsp20/alpha crystallin family 47 146 9.4E-25 T 31-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BRM88_04615 68e7fa3b32abc9e7377dcb0fb277486c 158 Gene3D G3DSA:2.60.40.790 9 146 1.8E-39 T 31-10-2018 IPR008978 HSP20-like chaperone BRM88_07530 500f7eff47f2ac4bbc98546b8f0f4ab7 286 Pfam PF13503 Domain of unknown function (DUF4123) 42 133 5.1E-8 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_07465 500f7eff47f2ac4bbc98546b8f0f4ab7 286 Pfam PF13503 Domain of unknown function (DUF4123) 42 133 5.1E-8 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_11905 22f544b08983487f17d491575145f77e 76 SUPERFAMILY SSF57987 31 76 3.36E-19 T 31-10-2018 BRM88_11905 22f544b08983487f17d491575145f77e 76 Pfam PF10389 Bacteriophage coat protein B 34 76 7.7E-19 T 31-10-2018 IPR008020 Capsid protein G8P BRM88_11895 70db40689d13abd115dce44a2ee854da 109 Pfam PF10734 Protein of unknown function (DUF2523) 8 94 2.9E-21 T 31-10-2018 IPR019670 Protein of unkown function DUF2523 BRM88_24435 5c96870bf53606a1bda1cacdb3ac09b4 195 Pfam PF14103 Domain of unknown function (DUF4276) 10 182 6.3E-11 T 31-10-2018 IPR025455 Protein of unknown function DUF4276 BRM88_05120 474d2e099ba690468c45cc64fbd0a28b 335 Gene3D G3DSA:3.40.718.10 1 335 4.0E-139 T 31-10-2018 BRM88_05120 474d2e099ba690468c45cc64fbd0a28b 335 SMART SM01329 4 331 2.6E-178 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BRM88_05120 474d2e099ba690468c45cc64fbd0a28b 335 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 227 246 - T 31-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BRM88_05120 474d2e099ba690468c45cc64fbd0a28b 335 SUPERFAMILY SSF53659 1 335 1.48E-123 T 31-10-2018 BRM88_05120 474d2e099ba690468c45cc64fbd0a28b 335 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 325 1.3E-104 T 31-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BRM88_12505 52c7c1e36f2f7594689547875d646b7b 207 Gene3D G3DSA:3.40.50.300 3 188 6.0E-17 T 31-10-2018 BRM88_12505 52c7c1e36f2f7594689547875d646b7b 207 SUPERFAMILY SSF52540 4 156 2.09E-11 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_23645 954dc9d539c710df342f028026a89754 318 SUPERFAMILY SSF53098 165 308 7.59E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_23645 954dc9d539c710df342f028026a89754 318 Pfam PF13936 Helix-turn-helix domain 3 45 4.9E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_23645 954dc9d539c710df342f028026a89754 318 Pfam PF00665 Integrase core domain 174 266 1.8E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_16700 4bad6e4d44b59476e0437ca89f566edd 785 SUPERFAMILY SSF48208 275 662 7.48E-16 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_16700 4bad6e4d44b59476e0437ca89f566edd 785 Gene3D G3DSA:1.50.10.10 346 646 1.8E-7 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_18725 7a64807e487a9ba83e67f1223913be9b 160 Pfam PF11745 Protein of unknown function (DUF3304) 18 120 4.6E-26 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_16000 51c498f9be828d0978ff5c602f6e5a18 176 SUPERFAMILY SSF81342 7 175 7.38E-28 T 31-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BRM88_16000 51c498f9be828d0978ff5c602f6e5a18 176 Pfam PF01292 Prokaryotic cytochrome b561 6 173 9.6E-22 T 31-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BRM88_07535 d290eccc6cf44c749566df9f50618673 228 Pfam PF11745 Protein of unknown function (DUF3304) 69 130 1.2E-6 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_02625 ad34828f0cc7e2a2975802911328363f 208 Pfam PF13548 Domain of unknown function (DUF4126) 9 176 4.3E-42 T 31-10-2018 IPR025196 Domain of unknown function DUF4126 BRM88_20540 13bf8b632972f7bcd4b4b7eb85a350de 156 SUPERFAMILY SSF48013 19 150 1.44E-40 T 31-10-2018 IPR035926 NusB-like superfamily BRM88_20540 13bf8b632972f7bcd4b4b7eb85a350de 156 Gene3D G3DSA:1.10.940.10 15 153 2.1E-44 T 31-10-2018 IPR035926 NusB-like superfamily BRM88_20540 13bf8b632972f7bcd4b4b7eb85a350de 156 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 21 147 2.8E-42 T 31-10-2018 IPR011605 NusB antitermination factor GO:0006353 BRM88_20540 13bf8b632972f7bcd4b4b7eb85a350de 156 Pfam PF01029 NusB family 23 146 2.5E-33 T 31-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BRM88_20540 13bf8b632972f7bcd4b4b7eb85a350de 156 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 19 150 22.165 T 31-10-2018 IPR011605 NusB antitermination factor GO:0006353 BRM88_15910 ae35b68e1eeff52c47bb678d50ac451d 352 SUPERFAMILY SSF53795 165 211 3.97E-9 T 31-10-2018 BRM88_15910 ae35b68e1eeff52c47bb678d50ac451d 352 Gene3D G3DSA:3.40.50.300 160 259 5.8E-7 T 31-10-2018 BRM88_22725 247f375c7a8ec774cf2363e9fa04a3c9 186 Pfam PF02592 Putative vitamin uptake transporter 44 85 1.5E-7 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_22725 247f375c7a8ec774cf2363e9fa04a3c9 186 Pfam PF02592 Putative vitamin uptake transporter 88 173 2.3E-17 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_22725 247f375c7a8ec774cf2363e9fa04a3c9 186 Hamap MF_02088 Probable queuosine precursor transporter. 14 184 12.961 T 31-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BRM88_23870 63faebe72a6bfa8752b42df6aebc26f2 203 Gene3D G3DSA:3.90.280.10 1 197 1.2E-47 T 31-10-2018 IPR036610 PEBP-like superfamily BRM88_23870 63faebe72a6bfa8752b42df6aebc26f2 203 Pfam PF01161 Phosphatidylethanolamine-binding protein 26 196 1.0E-36 T 31-10-2018 IPR008914 Phosphatidylethanolamine-binding protein BRM88_23870 63faebe72a6bfa8752b42df6aebc26f2 203 SUPERFAMILY SSF49777 1 198 3.92E-41 T 31-10-2018 IPR036610 PEBP-like superfamily BRM88_23870 63faebe72a6bfa8752b42df6aebc26f2 203 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 28 195 4.8E-25 T 31-10-2018 IPR005247 YbhB/YbcL BRM88_05310 cc88ef26c998e54ca62c8a3fce7dec9a 735 Gene3D G3DSA:3.40.50.1820 186 366 2.1E-8 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05310 cc88ef26c998e54ca62c8a3fce7dec9a 735 Pfam PF11678 Protein of unknown function (DUF3274) 417 710 8.5E-71 T 31-10-2018 IPR021692 Protein of unknown function DUF3274 BRM88_05310 cc88ef26c998e54ca62c8a3fce7dec9a 735 SUPERFAMILY SSF53474 203 301 7.53E-11 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01725 6f55a45e4bbb6c8d4c9b7b92020632d2 214 Pfam PF02036 SCP-2 sterol transfer family 21 121 2.4E-15 T 31-10-2018 IPR003033 SCP2 sterol-binding domain BRM88_01800 12bcf796d7e962948b596060fd3d73ae 368 Pfam PF01609 Transposase DDE domain 175 351 1.8E-6 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_01800 12bcf796d7e962948b596060fd3d73ae 368 Pfam PF05598 Transposase domain (DUF772) 56 130 2.0E-22 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_13370 26ae018cbd7988ef86786c24e447b78a 443 SUPERFAMILY SSF81340 3 408 4.32E-85 T 31-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BRM88_13370 26ae018cbd7988ef86786c24e447b78a 443 Gene3D G3DSA:1.10.3080.10 8 409 3.2E-55 T 31-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BRM88_13370 26ae018cbd7988ef86786c24e447b78a 443 PRINTS PR00762 Chloride channel signature 153 172 8.3E-5 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_13370 26ae018cbd7988ef86786c24e447b78a 443 PRINTS PR00762 Chloride channel signature 102 121 8.3E-5 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_13370 26ae018cbd7988ef86786c24e447b78a 443 Pfam PF00654 Voltage gated chloride channel 62 392 2.9E-63 T 31-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BRM88_21725 020fc63a7dfd7419764c2a8888b9fca6 196 SUPERFAMILY SSF52833 54 189 2.53E-18 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_21725 020fc63a7dfd7419764c2a8888b9fca6 196 Pfam PF13899 Thioredoxin-like 75 159 3.5E-12 T 31-10-2018 BRM88_21725 020fc63a7dfd7419764c2a8888b9fca6 196 Gene3D G3DSA:3.40.30.10 62 192 2.0E-22 T 31-10-2018 BRM88_05020 2b290eb156b91a7e79808a569a495a33 439 Pfam PF13546 DDE superfamily endonuclease 18 291 2.0E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_05020 2b290eb156b91a7e79808a569a495a33 439 SUPERFAMILY SSF53098 18 403 6.83E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_03220 193208ef58cb14e0c62fabb155d0cc81 469 PIRSF PIRSF006446 1 456 2.0E-178 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BRM88_03220 193208ef58cb14e0c62fabb155d0cc81 469 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 434 7.9E-147 T 31-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BRM88_11550 21326c2137aef875aafd164bf9a4b090 408 TIGRFAM TIGR01834 PHA_synth_III_E: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit 11 312 7.7E-113 T 31-10-2018 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit BRM88_11550 21326c2137aef875aafd164bf9a4b090 408 Pfam PF09712 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) 12 300 1.5E-79 T 31-10-2018 IPR010123 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit BRM88_23360 411101f27f9e8f02f4f568aa3d8d1e2d 919 Pfam PF00593 TonB dependent receptor 375 915 6.1E-40 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_23360 411101f27f9e8f02f4f568aa3d8d1e2d 919 SUPERFAMILY SSF56935 21 916 5.33E-90 T 31-10-2018 BRM88_23360 411101f27f9e8f02f4f568aa3d8d1e2d 919 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 163 1.1E-21 T 31-10-2018 IPR012910 TonB-dependent receptor, plug domain BRM88_23360 411101f27f9e8f02f4f568aa3d8d1e2d 919 Gene3D G3DSA:2.170.130.10 27 167 3.4E-31 T 31-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BRM88_13505 c6918ffcfb2a9fdc971a281e2ccaade2 110 SUPERFAMILY SSF140566 5 81 1.03E-7 T 31-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 Gene3D G3DSA:3.40.1010.20 97 198 5.3E-110 T 31-10-2018 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 38.748 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3 286 1.5E-99 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 Gene3D G3DSA:3.40.50.11270 12 96 5.3E-110 T 31-10-2018 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 Pfam PF02401 LytB protein 3 284 8.5E-92 T 31-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BRM88_08425 b89c6c09bd21e3938535e3b37ad64495 316 Gene3D G3DSA:3.40.1010.20 6 283 5.3E-110 T 31-10-2018 BRM88_08900 8362389163d0de90b32ef3913dbebff3 155 Pfam PF05926 Phage head completion protein (GPL) 17 155 8.4E-51 T 31-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 BRM88_03760 17144e6313eda13922d38f8c2f5d6653 368 Pfam PF05275 Copper resistance protein B precursor (CopB) 164 368 2.3E-78 T 31-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 BRM88_24430 d5156691ecd244eff1ad721a58287acb 490 Pfam PF11855 Protein of unknown function (DUF3375) 11 480 2.9E-148 T 31-10-2018 IPR021804 Protein of unknown function DUF3375 BRM88_15835 86565f323d0caa091d104ddb3018e83c 502 Pfam PF00450 Serine carboxypeptidase 94 469 4.5E-19 T 31-10-2018 IPR001563 Peptidase S10, serine carboxypeptidase GO:0004185|GO:0006508 BRM88_15835 86565f323d0caa091d104ddb3018e83c 502 Gene3D G3DSA:3.40.50.1820 63 491 1.0E-22 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_15835 86565f323d0caa091d104ddb3018e83c 502 ProSitePatterns PS00131 Serine carboxypeptidases, serine active site. 207 214 - T 31-10-2018 IPR018202 Serine carboxypeptidase, serine active site BRM88_15835 86565f323d0caa091d104ddb3018e83c 502 SUPERFAMILY SSF53474 55 486 5.47E-71 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_03025 2a4af5c8fb13af084339fb88f79c5859 488 Pfam PF03703 Bacterial PH domain 72 149 1.1E-16 T 31-10-2018 IPR005182 Domain of unknown function DUF304 BRM88_03025 2a4af5c8fb13af084339fb88f79c5859 488 Pfam PF03703 Bacterial PH domain 410 468 6.4E-11 T 31-10-2018 IPR005182 Domain of unknown function DUF304 BRM88_03025 2a4af5c8fb13af084339fb88f79c5859 488 Pfam PF03703 Bacterial PH domain 262 335 2.2E-8 T 31-10-2018 IPR005182 Domain of unknown function DUF304 BRM88_03025 2a4af5c8fb13af084339fb88f79c5859 488 PIRSF PIRSF026631 7 487 5.9E-123 T 31-10-2018 IPR014529 Uncharacterised conserved protein UCP026631 BRM88_24095 e98f20378c6320acfc7ea0d8b1aa9613 290 Gene3D G3DSA:3.20.20.140 2 284 2.6E-80 T 31-10-2018 BRM88_24095 e98f20378c6320acfc7ea0d8b1aa9613 290 SUPERFAMILY SSF51556 3 277 3.63E-66 T 31-10-2018 IPR032466 Metal-dependent hydrolase BRM88_24095 e98f20378c6320acfc7ea0d8b1aa9613 290 Pfam PF04909 Amidohydrolase 4 277 1.1E-38 T 31-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BRM88_12440 c3dafffe4a0135c5d04cea3fb62baf2b 202 Gene3D G3DSA:1.20.1540.10 1 191 1.3E-25 T 31-10-2018 IPR035952 Rhomboid-like superfamily BRM88_12440 c3dafffe4a0135c5d04cea3fb62baf2b 202 Pfam PF01694 Rhomboid family 35 186 3.8E-26 T 31-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BRM88_12440 c3dafffe4a0135c5d04cea3fb62baf2b 202 SUPERFAMILY SSF144091 2 189 2.09E-33 T 31-10-2018 BRM88_15065 c4e8ffc516e1b387b08edf716693b8f7 171 Gene3D G3DSA:2.40.170.20 1 169 6.8E-39 T 31-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BRM88_15065 c4e8ffc516e1b387b08edf716693b8f7 171 SUPERFAMILY SSF56935 1 169 1.18E-31 T 31-10-2018 BRM88_15065 c4e8ffc516e1b387b08edf716693b8f7 171 Pfam PF00593 TonB dependent receptor 1 168 4.3E-21 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_17745 a57c1b0f815f12f026a8a6b1839d976a 203 Pfam PF06197 Protein of unknown function (DUF998) 14 195 1.0E-13 T 31-10-2018 IPR009339 Protein of unknown function DUF998 BRM88_22050 002d51cd50cc8c19e98fb4b55d898a60 81 Gene3D G3DSA:3.40.50.1820 1 77 1.3E-6 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_05365 bd963340fc1232bec229e36064581232 119 Gene3D G3DSA:3.10.450.50 2 112 1.3E-12 T 31-10-2018 BRM88_05365 bd963340fc1232bec229e36064581232 119 Pfam PF14534 Domain of unknown function (DUF4440) 4 105 2.4E-13 T 31-10-2018 IPR027843 Domain of unknown function DUF4440 BRM88_05365 bd963340fc1232bec229e36064581232 119 SUPERFAMILY SSF54427 3 112 5.55E-12 T 31-10-2018 IPR032710 NTF2-like domain superfamily BRM88_16425 fa6ea4fe8f0af3493bd73baf42bd92f5 596 Pfam PF11737 Protein of unknown function (DUF3300) 46 307 2.7E-62 T 31-10-2018 IPR021728 Protein of unknown function DUF3300 BRM88_23810 38681644abc5a933aae36684cc20f077 321 SMART SM01126 137 282 1.4E-48 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_23810 38681644abc5a933aae36684cc20f077 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 2.2E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_23810 38681644abc5a933aae36684cc20f077 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.1E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_07520 6b3ccad2b873c983f4e7943b4e7e205d 702 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 309 421 4.6E-14 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_07520 6b3ccad2b873c983f4e7943b4e7e205d 702 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 131 298 1.3E-13 T 31-10-2018 IPR018712 Domain of unknown function DUF2235 BRM88_20625 e16bf1f1c06a279607bec3ad3ac9639e 276 Gene3D G3DSA:3.40.50.1820 1 275 1.3E-96 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_20625 e16bf1f1c06a279607bec3ad3ac9639e 276 SUPERFAMILY SSF53474 1 274 3.63E-90 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_20625 e16bf1f1c06a279607bec3ad3ac9639e 276 Pfam PF00756 Putative esterase 21 268 2.1E-66 T 31-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 BRM88_20625 e16bf1f1c06a279607bec3ad3ac9639e 276 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 4 274 1.3E-128 T 31-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 BRM88_17850 bacfb994bd2b95abdc9d3436da0b9f03 321 SMART SM01126 137 282 8.9E-48 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17850 bacfb994bd2b95abdc9d3436da0b9f03 321 Pfam PF12762 ISXO2-like transposase domain 137 282 1.8E-31 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_17850 bacfb994bd2b95abdc9d3436da0b9f03 321 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.6E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_22485 559d17d6bd7ae0fbc55b869a446f7714 127 Pfam PF03692 Putative zinc- or iron-chelating domain 4 96 2.0E-12 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein BRM88_11530 521d0bcd71f5d782f43be85a92ebbdd3 169 Pfam PF06853 Protein of unknown function (DUF1249) 31 145 1.9E-27 T 31-10-2018 IPR009659 Protein of unknown function DUF1249 BRM88_22505 4eda80933657f99492ce8ceaff2f9bf1 458 Pfam PF01609 Transposase DDE domain 281 416 2.0E-8 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_22505 4eda80933657f99492ce8ceaff2f9bf1 458 Pfam PF05598 Transposase domain (DUF772) 59 132 1.7E-15 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_22695 d847c1c79e53d68a3fb65dbefc3c41b2 248 Gene3D G3DSA:2.40.128.110 67 235 1.6E-50 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_22695 d847c1c79e53d68a3fb65dbefc3c41b2 248 SUPERFAMILY SSF101874 67 234 4.45E-53 T 31-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BRM88_22695 d847c1c79e53d68a3fb65dbefc3c41b2 248 Pfam PF04264 YceI-like domain 70 232 2.6E-42 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_22695 d847c1c79e53d68a3fb65dbefc3c41b2 248 SMART SM00867 69 233 1.5E-66 T 31-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BRM88_00745 e24245cf82de96a19c7c2eadc8e53ca1 436 Pfam PF12704 MacB-like periplasmic core domain 70 274 9.7E-12 T 31-10-2018 IPR025857 MacB-like periplasmic core domain BRM88_00745 e24245cf82de96a19c7c2eadc8e53ca1 436 Pfam PF02687 FtsX-like permease family 334 427 2.5E-8 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BRM88_05315 012311e746079f6ed8ef68b2f5eb7bfd 559 Pfam PF11394 Protein of unknown function (DUF2875) 104 548 3.0E-163 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 BRM88_19560 ffd2129389c8030eafbb5e31be5ea309 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 32 112 1.3E-16 T 31-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BRM88_19560 ffd2129389c8030eafbb5e31be5ea309 131 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 48 95 1.5E-9 T 31-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BRM88_19560 ffd2129389c8030eafbb5e31be5ea309 131 SUPERFAMILY SSF69118 6 112 4.32E-24 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BRM88_19560 ffd2129389c8030eafbb5e31be5ea309 131 Gene3D G3DSA:1.20.1290.10 5 124 8.9E-34 T 31-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BRM88_00585 8780bb91b16050eaf33be900a116422f 790 Pfam PF05819 NolX protein 37 268 5.5E-93 T 31-10-2018 IPR008718 NolX GO:0009877 BRM88_00585 8780bb91b16050eaf33be900a116422f 790 Pfam PF05819 NolX protein 331 620 4.9E-151 T 31-10-2018 IPR008718 NolX GO:0009877 BRM88_00585 8780bb91b16050eaf33be900a116422f 790 Pfam PF05819 NolX protein 259 334 4.2E-28 T 31-10-2018 IPR008718 NolX GO:0009877 BRM88_21680 3b9658348ffff482e7e35dc95826f2d3 124 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 109 9.9E-23 T 31-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 341 1.3E-107 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 297 318 5.1E-39 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 267 282 5.1E-39 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 5.1E-39 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 223 240 5.1E-39 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 203 221 5.1E-39 T 31-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 SUPERFAMILY SSF160544 239 343 5.36E-32 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 342 1.2E-102 T 31-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 BRM88_00490 bf6c4730a9dbbf98f7be0b7cc64eb285 359 Gene3D G3DSA:3.40.1690.10 212 349 2.7E-49 T 31-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BRM88_18700 16a9e537c6fbc13f9a959d0b6eb7409b 181 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 12 96 1.4E-21 T 31-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal BRM88_08880 f273bab54fe9c93fedc08e2682f8f0bc 213 SUPERFAMILY SSF53955 3 213 4.78E-41 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_08880 f273bab54fe9c93fedc08e2682f8f0bc 213 Gene3D G3DSA:1.10.530.70 19 211 5.6E-11 T 31-10-2018 BRM88_11180 537931888d383184ba2e941e5b24c8e1 623 Pfam PF13387 Domain of unknown function (DUF4105) 234 400 1.8E-29 T 31-10-2018 IPR025178 Domain of unknown function DUF4105 BRM88_06385 2599e5ebd236f2c6e86bd430df66627f 257 Pfam PF04012 PspA/IM30 family 2 228 1.2E-37 T 31-10-2018 IPR007157 PspA/IM30 BRM88_18475 ff986211fafc443ee5b4096917f242d7 368 Pfam PF07751 Abi-like protein 70 280 3.5E-50 T 31-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like BRM88_14450 2c75831a4b74d0f44e64698b280c52b7 122 Gene3D G3DSA:3.90.920.30 8 122 6.7E-31 T 31-10-2018 BRM88_08955 8dfc05d5822d2caca9c05919a5ad71e4 185 Pfam PF13503 Domain of unknown function (DUF4123) 23 146 2.7E-22 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 SUPERFAMILY SSF51905 14 345 9.02E-39 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 Gene3D G3DSA:3.50.50.60 11 419 1.7E-120 T 31-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 Pfam PF01494 FAD binding domain 14 319 1.1E-17 T 31-10-2018 IPR002938 FAD-binding domain GO:0071949 BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 14 36 2.1E-7 T 31-10-2018 BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 306 2.1E-7 T 31-10-2018 BRM88_22950 11e295d99a7f5a964f13a45f3743f55a 449 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 176 2.1E-7 T 31-10-2018 BRM88_10205 fba5b42bc918357abd46ed85408bab17 447 Pfam PF12040 Domain of unknown function (DUF3526) 307 444 5.0E-26 T 31-10-2018 IPR021913 Protein of unknown function DUF3526 BRM88_10205 fba5b42bc918357abd46ed85408bab17 447 Pfam PF12679 ABC-2 family transporter protein 31 297 3.7E-9 T 31-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BRM88_10770 a43e7c34122891e935e6a785aae2d6a6 281 Pfam PF13557 Putative MetA-pathway of phenol degradation 63 280 1.1E-10 T 31-10-2018 IPR025737 MetA-pathway of phenol degradation, putative BRM88_04280 ae99e2f5143b32a4b0033d4e9aae70ef 211 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 31-10-2018 IPR012902 Prokaryotic N-terminal methylation site BRM88_06380 a859107415d0ef2acf4890186606c920 138 Pfam PF09938 Uncharacterized protein conserved in bacteria (DUF2170) 4 136 3.4E-41 T 31-10-2018 IPR019231 Protein of unknown function DUF2170 BRM88_04290 d646587e4ec21cd348be75dcd521d77b 373 Gene3D G3DSA:3.30.1490.300 107 163 2.2E-5 T 31-10-2018 BRM88_04290 d646587e4ec21cd348be75dcd521d77b 373 Pfam PF05137 Fimbrial assembly protein (PilN) 287 358 1.0E-13 T 31-10-2018 IPR007813 Fimbrial assembly PilN BRM88_04290 d646587e4ec21cd348be75dcd521d77b 373 SUPERFAMILY SSF53067 85 184 9.06E-6 T 31-10-2018 BRM88_06395 defc05df62573d6e9009d0637781ac3f 223 Pfam PF10679 Protein of unknown function (DUF2491) 3 220 1.6E-66 T 31-10-2018 IPR019621 Protein of unknown function DUF2491 BRM88_14640 880f478cc83ad4ecb73f9e2796f9ee81 426 Pfam PF13387 Domain of unknown function (DUF4105) 61 193 2.7E-16 T 31-10-2018 IPR025178 Domain of unknown function DUF4105 BRM88_10905 94e08e8e8e6886b9acfd7f0123571bfb 491 Pfam PF05598 Transposase domain (DUF772) 75 149 1.0E-13 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_05085 86915eed050a761991c768e33626631b 80 Gene3D G3DSA:3.20.20.190 2 75 6.5E-11 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_05085 86915eed050a761991c768e33626631b 80 Pfam PF16387 Domain of unknown function 7 69 1.4E-12 T 31-10-2018 IPR032160 Domain of unknown function DUF4996 BRM88_05515 1a1323d4a322a526f922a785cdc6aea4 116 Pfam PF14487 Domain of unknown function (DUF4433) 1 115 1.4E-25 T 31-10-2018 IPR029494 Domain of unknown function DUF4433 BRM88_06660 e9a39667ea867c908794ce7a96493629 387 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 55 290 3.5E-60 T 31-10-2018 IPR018642 Protein of unknown function DUF2066 BRM88_08155 9c955f2e3c9cfcbe7f4dfec35f7cea91 135 Pfam PF15523 Novel toxin 16 54 130 6.8E-12 T 31-10-2018 IPR029118 Novel toxin 16 BRM88_00795 2a5d07f3554cebfb974b1e98d6fc2f71 714 Gene3D G3DSA:3.20.20.190 267 541 1.5E-24 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_00795 2a5d07f3554cebfb974b1e98d6fc2f71 714 SUPERFAMILY SSF51695 273 406 2.46E-20 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_00795 2a5d07f3554cebfb974b1e98d6fc2f71 714 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 274 515 5.5E-31 T 31-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BRM88_18090 51efaf101725f82a1372c817c62e500c 145 Pfam PF11162 Protein of unknown function (DUF2946) 14 142 8.9E-8 T 31-10-2018 IPR021333 Protein of unknown function DUF2946 BRM88_22525 568e287f1726599ee32a765acf57fe42 435 Gene3D G3DSA:1.20.1250.20 19 435 1.1E-59 T 31-10-2018 BRM88_22525 568e287f1726599ee32a765acf57fe42 435 Pfam PF07690 Major Facilitator Superfamily 28 368 2.4E-28 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_22525 568e287f1726599ee32a765acf57fe42 435 SUPERFAMILY SSF103473 15 431 7.19E-63 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_12845 751bf6f5cf3bc734612f1ae0d70051e3 176 SUPERFAMILY SSF51182 1 168 1.38E-57 T 31-10-2018 IPR011051 RmlC-like cupin domain superfamily BRM88_12845 751bf6f5cf3bc734612f1ae0d70051e3 176 Hamap MF_00825 3-hydroxyanthranilate 3,4-dioxygenase [nbaC]. 2 168 37.36 T 31-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BRM88_12845 751bf6f5cf3bc734612f1ae0d70051e3 176 Pfam PF06052 3-hydroxyanthranilic acid dioxygenase 3 150 1.1E-76 T 31-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BRM88_12845 751bf6f5cf3bc734612f1ae0d70051e3 176 Gene3D G3DSA:2.60.120.10 4 175 9.2E-74 T 31-10-2018 IPR014710 RmlC-like jelly roll fold BRM88_12845 751bf6f5cf3bc734612f1ae0d70051e3 176 TIGRFAM TIGR03037 anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase 6 163 2.7E-79 T 31-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BRM88_15970 c77cf71cc999baf766785853c0faa4ae 417 Pfam PF01943 Polysaccharide biosynthesis protein 4 275 3.9E-10 T 31-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BRM88_11855 1c730e8fe6b9b46f6fc19f761d678403 394 Gene3D G3DSA:3.40.50.300 1 178 2.8E-32 T 31-10-2018 BRM88_11855 1c730e8fe6b9b46f6fc19f761d678403 394 Pfam PF05707 Zonular occludens toxin (Zot) 1 175 4.2E-15 T 31-10-2018 IPR008900 Zona occludens toxin BRM88_11805 2273b88befb622109f036ddbed9ed42d 259 Gene3D G3DSA:2.160.20.10 18 258 1.1E-32 T 31-10-2018 IPR012334 Pectin lyase fold BRM88_11805 2273b88befb622109f036ddbed9ed42d 259 SUPERFAMILY SSF51126 80 257 9.42E-15 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_11805 2273b88befb622109f036ddbed9ed42d 259 Pfam PF16380 Domain of unknown function 183 240 2.4E-10 T 31-10-2018 IPR032153 Domain of unknown function DUF4990 BRM88_08885 1f7df7ce27b0bdd7f882d49b2cf8ce21 91 Pfam PF05449 Putative 3TM holin, Phage_holin_3 9 89 1.2E-28 T 31-10-2018 IPR008473 Putative 3TM holin, Phage holin 3 BRM88_09760 8295ab39a3cda5216113aca1a2e6233a 214 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 8 208 2.5E-55 T 31-10-2018 IPR026336 Metallophosphoesterase, DNA ligase-associated BRM88_09760 8295ab39a3cda5216113aca1a2e6233a 214 Gene3D G3DSA:3.60.21.10 30 167 3.3E-10 T 31-10-2018 IPR029052 Metallo-dependent phosphatase-like BRM88_09760 8295ab39a3cda5216113aca1a2e6233a 214 PIRSF PIRSF000887 7 210 2.0E-50 T 31-10-2018 IPR024173 Phosphoesterase, MJ0037 BRM88_09760 8295ab39a3cda5216113aca1a2e6233a 214 Pfam PF00149 Calcineurin-like phosphoesterase 28 121 3.5E-7 T 31-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BRM88_09760 8295ab39a3cda5216113aca1a2e6233a 214 SUPERFAMILY SSF56300 28 159 1.9E-13 T 31-10-2018 BRM88_21120 87ea9916242adbed97122bf1e468f140 379 Gene3D G3DSA:1.10.530.10 107 368 4.0E-101 T 31-10-2018 BRM88_21120 87ea9916242adbed97122bf1e468f140 379 SUPERFAMILY SSF53955 70 373 3.19E-82 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_21120 87ea9916242adbed97122bf1e468f140 379 Gene3D G3DSA:1.10.8.350 74 253 4.0E-101 T 31-10-2018 BRM88_21120 87ea9916242adbed97122bf1e468f140 379 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 70 371 1.2E-124 T 31-10-2018 IPR011757 Lytic transglycosylase MltB BRM88_21120 87ea9916242adbed97122bf1e468f140 379 Pfam PF13406 Transglycosylase SLT domain 68 369 7.6E-91 T 31-10-2018 IPR031304 Transglycosylase SLT domain 2 BRM88_09050 e4641c83891bee0ac0744b2074cda444 250 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 5 242 7.7E-127 T 31-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 BRM88_09050 e4641c83891bee0ac0744b2074cda444 250 SUPERFAMILY SSF48613 4 231 8.9E-61 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_09050 e4641c83891bee0ac0744b2074cda444 250 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 250 115.609 T 31-10-2018 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 BRM88_09050 e4641c83891bee0ac0744b2074cda444 250 Gene3D G3DSA:1.20.910.10 1 235 6.0E-59 T 31-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BRM88_09050 e4641c83891bee0ac0744b2074cda444 250 Pfam PF03070 TENA/THI-4/PQQC family 12 222 2.0E-58 T 31-10-2018 IPR004305 Thiaminase-2/PQQC BRM88_22790 0a683aa4d5fe805e402f5850e55ff4e5 532 Pfam PF00593 TonB dependent receptor 15 483 3.8E-29 T 31-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BRM88_22790 0a683aa4d5fe805e402f5850e55ff4e5 532 SUPERFAMILY SSF56935 18 484 1.19E-33 T 31-10-2018 BRM88_07100 af3818c7505887656bec2474c686ec45 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_07100 af3818c7505887656bec2474c686ec45 394 Pfam PF00872 Transposase, Mutator family 11 368 2.4E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_10900 af3818c7505887656bec2474c686ec45 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_10900 af3818c7505887656bec2474c686ec45 394 Pfam PF00872 Transposase, Mutator family 11 368 2.4E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_10505 9a93d6c20447e06b3d43421440845efd 158 Pfam PF03168 Late embryogenesis abundant protein 50 141 6.2E-7 T 31-10-2018 IPR004864 Late embryogenesis abundant protein, LEA_2 subgroup BRM88_10505 9a93d6c20447e06b3d43421440845efd 158 SUPERFAMILY SSF117070 16 128 4.97E-6 T 31-10-2018 BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 655 686 3.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 723 753 1.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 892 923 6.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 824 855 1.0E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 418 449 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 452 483 4.5E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 384 415 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 621 652 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 756 787 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 858 889 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 520 551 3.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 554 585 1.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 486 517 6.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 960 989 2.7E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 689 720 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 351 381 1.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 790 821 5.5E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 926 957 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 588 618 4.0E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 317 348 1.6E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11990 afd39a74aabd3cb6723373cc110170a0 1265 Pfam PF03377 TAL effector repeat 996 1020 0.047 T 31-10-2018 IPR005042 TAL effector repeat BRM88_08905 f851c66de838d372482929072868ad80 239 Pfam PF05944 Phage small terminase subunit 39 167 4.8E-50 T 31-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 BRM88_08870 9f986d37d2b4f96d010f9a1b3d62a9db 139 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 1.1E-43 T 31-10-2018 IPR009678 Bacteriophage tail completion protein R BRM88_04880 c75109240c7f8e0ecb56f1636c663a0f 294 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 12 267 4.7E-38 T 31-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 BRM88_03215 eeb08650c0434a1aadbd1f3d6c488623 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 326 4.6E-93 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BRM88_03215 eeb08650c0434a1aadbd1f3d6c488623 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 7 214 3.2E-43 T 31-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BRM88_00815 f5a1971d73a07a90c66e4f1072e7f961 379 Gene3D G3DSA:3.30.360.10 139 301 2.6E-6 T 31-10-2018 BRM88_00815 f5a1971d73a07a90c66e4f1072e7f961 379 Gene3D G3DSA:3.40.50.720 1 135 3.6E-18 T 31-10-2018 BRM88_00815 f5a1971d73a07a90c66e4f1072e7f961 379 SUPERFAMILY SSF51735 2 139 8.74E-13 T 31-10-2018 IPR036291 NAD(P)-binding domain superfamily BRM88_00815 f5a1971d73a07a90c66e4f1072e7f961 379 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 5 128 3.2E-11 T 31-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 BRM88_16995 7477d0bd2760f44fa5e6b9cf522f6aa5 479 Pfam PF13807 G-rich domain on putative tyrosine kinase 394 467 1.1E-20 T 31-10-2018 IPR032807 Tyrosine kinase, G-rich domain BRM88_16995 7477d0bd2760f44fa5e6b9cf522f6aa5 479 Pfam PF02706 Chain length determinant protein 30 118 1.3E-11 T 31-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 BRM88_21035 3cd266162d619c1ad402faba8f17c941 253 Pfam PF10001 Uncharacterized protein conserved in bacteria (DUF2242) 54 173 3.5E-47 T 31-10-2018 IPR018718 Protein of unknown function DUF2242 BRM88_02325 28371ab61483eb9b9e3e618d004fd188 144 Pfam PF00723 Glycosyl hydrolases family 15 6 130 8.0E-11 T 31-10-2018 IPR011613 GH15-like domain Reactome: R-HSA-70221 BRM88_02325 28371ab61483eb9b9e3e618d004fd188 144 SUPERFAMILY SSF48208 1 135 3.83E-37 T 31-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BRM88_02325 28371ab61483eb9b9e3e618d004fd188 144 Gene3D G3DSA:1.50.10.10 2 142 7.0E-29 T 31-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BRM88_07445 2c24eb9fbf321a31124198a2bcdf700a 690 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 3.1E-36 T 31-10-2018 IPR025299 CstA, C-terminal domain BRM88_07445 2c24eb9fbf321a31124198a2bcdf700a 690 Pfam PF02554 Carbon starvation protein CstA 31 408 2.7E-164 T 31-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 BRM88_24100 fb059c384bf64eb9a50e8c3357831f66 336 Gene3D G3DSA:3.20.20.100 5 324 3.0E-62 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_24100 fb059c384bf64eb9a50e8c3357831f66 336 Pfam PF00248 Aldo/keto reductase family 19 323 1.3E-43 T 31-10-2018 IPR023210 NADP-dependent oxidoreductase domain BRM88_24100 fb059c384bf64eb9a50e8c3357831f66 336 SUPERFAMILY SSF51430 8 325 2.75E-62 T 31-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BRM88_24490 0524d02adb3454cb223d26bc7bed8009 372 Gene3D G3DSA:3.30.2310.20 5 93 2.9E-15 T 31-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BRM88_24490 0524d02adb3454cb223d26bc7bed8009 372 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 8 86 6.1E-12 T 31-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BRM88_23595 74babf935eb41a88729034d28ad10de3 318 Pfam PF12762 ISXO2-like transposase domain 137 279 1.6E-30 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_23595 74babf935eb41a88729034d28ad10de3 318 SMART SM01126 137 279 1.1E-45 T 31-10-2018 IPR024445 ISXO2-like transposase domain BRM88_23595 74babf935eb41a88729034d28ad10de3 318 Pfam PF12760 Transposase zinc-ribbon domain 25 69 1.4E-9 T 31-10-2018 IPR024442 Transposase, zinc-ribbon BRM88_02155 94dbc5fbf89a04e895ff2ac8b552fa3c 314 Gene3D G3DSA:3.60.15.10 7 262 9.3E-59 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_02155 94dbc5fbf89a04e895ff2ac8b552fa3c 314 SMART SM00849 21 226 4.2E-25 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_02155 94dbc5fbf89a04e895ff2ac8b552fa3c 314 Pfam PF00753 Metallo-beta-lactamase superfamily 24 197 8.8E-23 T 31-10-2018 IPR001279 Metallo-beta-lactamase BRM88_02155 94dbc5fbf89a04e895ff2ac8b552fa3c 314 SUPERFAMILY SSF56281 8 267 2.88E-48 T 31-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BRM88_04065 f1db00609ae6b1d714ee80f19d93b102 134 Pfam PF13511 Domain of unknown function (DUF4124) 10 66 1.9E-13 T 31-10-2018 IPR025392 Domain of unknown function DUF4124 BRM88_18735 b0c0e2c1d1c7f4fb5967facfcc89d0b2 298 Pfam PF13503 Domain of unknown function (DUF4123) 4 126 5.1E-18 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_08745 b30f97fe179d91d1b7ede8e877b7a686 91 SUPERFAMILY SSF52540 3 83 7.2E-6 T 31-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BRM88_01160 530930f4e43471b7c1892067c5a8c3bb 363 Pfam PF14315 Domain of unknown function (DUF4380) 35 328 4.3E-129 T 31-10-2018 IPR025488 Protein of unknown function DUF4380 BRM88_08940 cf3a20712b1624eb8168a95440398d59 248 Pfam PF15579 Immunity protein 52 167 239 5.5E-18 T 31-10-2018 IPR028969 Immunity protein 52 BRM88_23555 11ea82969e3caeb5ab7044323c51acff 493 Gene3D G3DSA:1.20.1250.20 60 481 5.6E-84 T 31-10-2018 BRM88_23555 11ea82969e3caeb5ab7044323c51acff 493 Pfam PF07690 Major Facilitator Superfamily 83 440 1.5E-52 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_23555 11ea82969e3caeb5ab7044323c51acff 493 SUPERFAMILY SSF103473 65 481 5.62E-83 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_18730 1c0e4422633c18aebc4020bb1fc35e36 154 Pfam PF11745 Protein of unknown function (DUF3304) 21 121 7.2E-25 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_15335 4993a209f6694b07a7fd43fef624f726 233 Pfam PF13542 Helix-turn-helix domain of transposase family ISL3 50 94 2.4E-9 T 31-10-2018 IPR032877 Transposase IS204/IS1001/IS1096/IS1165, helix-turn-helix domain BRM88_00780 0aa625d54e5d83d5a942b1fdd4cb09f6 220 Pfam PF03006 Haemolysin-III related 22 207 5.6E-24 T 31-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BRM88_07045 b719e9a7587f453327ac24269cd1439d 272 SUPERFAMILY SSF53474 37 249 1.65E-25 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_07045 b719e9a7587f453327ac24269cd1439d 272 Pfam PF07859 alpha/beta hydrolase fold 80 217 5.4E-10 T 31-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 BRM88_07045 b719e9a7587f453327ac24269cd1439d 272 Gene3D G3DSA:3.40.50.1820 56 267 3.3E-37 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_22855 3f148bfaaad1ae2200884b9cc8bcb57b 316 PIRSF PIRSF003097 18 310 7.3E-57 T 31-10-2018 IPR004513 Cell division protein FtsX GO:0016021 BRM88_05805 0334b8e7c3de328c2488e2d96f905ddc 115 Pfam PF07238 PilZ domain 6 109 2.5E-7 T 31-10-2018 IPR009875 PilZ domain GO:0035438 BRM88_02720 00c1f00e696200b61dc47cc5acb7c88a 204 Pfam PF14103 Domain of unknown function (DUF4276) 10 199 2.2E-25 T 31-10-2018 IPR025455 Protein of unknown function DUF4276 BRM88_03075 b8423587faa5223af84c8d95c88097aa 424 Gene3D G3DSA:1.10.443.10 243 416 4.2E-11 T 31-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BRM88_03075 b8423587faa5223af84c8d95c88097aa 424 Gene3D G3DSA:1.10.150.130 100 223 1.0E-10 T 31-10-2018 IPR010998 Integrase/recombinase, N-terminal BRM88_03075 b8423587faa5223af84c8d95c88097aa 424 SUPERFAMILY SSF56349 104 415 3.24E-28 T 31-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BRM88_07700 c07536c82871ebd869183af5463763fa 127 Pfam PF06123 Inner membrane protein CreD 1 55 1.0E-6 T 31-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 323 354 1.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 697 726 3.3E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 289 320 1.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 733 757 0.036 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 357 388 1.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 629 660 1.4E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 595 626 8.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 493 524 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 527 558 8.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 391 422 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 561 592 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 663 694 8.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 459 490 1.0E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06280 a7d31125b1b5522f1430710cd304697b 1002 Pfam PF03377 TAL effector repeat 425 456 7.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16340 28467f73d6fa9e36c1a7cf5eb530940b 438 Pfam PF13546 DDE superfamily endonuclease 18 290 1.5E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_16340 28467f73d6fa9e36c1a7cf5eb530940b 438 SUPERFAMILY SSF53098 8 402 5.54E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04035 30397ad06150ddbd33190188e35df811 308 Pfam PF02470 MlaD protein 39 115 5.2E-14 T 31-10-2018 IPR003399 Mce/MlaD BRM88_03535 06595689d29cd6df0bbf5eada863867e 186 Pfam PF07209 Protein of unknown function (DUF1415) 11 178 4.2E-71 T 31-10-2018 IPR009858 Protein of unknown function DUF1415 BRM88_08810 9d0c6ca81f287cdcb6a304b158ecbc03 37 Pfam PF06528 Phage P2 GpE 1 37 4.4E-22 T 31-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 BRM88_17560 315f5411605e78854112a35b25bff422 414 Pfam PF04235 Protein of unknown function (DUF418) 245 401 2.0E-40 T 31-10-2018 IPR007349 Domain of unknown function DUF418 BRM88_00625 167c82be79ebd57d569c5da78b7fa2d4 105 SUPERFAMILY SSF55874 4 48 5.39E-6 T 31-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BRM88_13425 979808145d05c7a40e2923a7cf90f77a 373 SUPERFAMILY SSF55729 183 351 1.03E-35 T 31-10-2018 IPR016181 Acyl-CoA N-acyltransferase BRM88_13425 979808145d05c7a40e2923a7cf90f77a 373 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 11 372 7.0E-135 T 31-10-2018 IPR007434 Peptidogalycan biosysnthesis/recognition BRM88_13425 979808145d05c7a40e2923a7cf90f77a 373 Gene3D G3DSA:3.40.630.30 171 316 1.8E-8 T 31-10-2018 BRM88_07470 aba6dfc2d7c6d3463c71086b12d41d33 228 Pfam PF11745 Protein of unknown function (DUF3304) 69 133 2.3E-7 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_18775 e513d3dbb3bde095463d77735c333d66 86 Gene3D G3DSA:2.60.200.60 44 86 3.6E-12 T 31-10-2018 BRM88_18775 e513d3dbb3bde095463d77735c333d66 86 Gene3D G3DSA:2.60.200.60 1 43 6.0E-7 T 31-10-2018 BRM88_18775 e513d3dbb3bde095463d77735c333d66 86 Pfam PF05488 PAAR motif 8 78 2.6E-25 T 31-10-2018 IPR008727 PAAR motif BRM88_11325 c05e027cb9b1df79c276490f1c7e2378 406 Pfam PF01963 TraB family 21 242 4.0E-24 T 31-10-2018 IPR002816 Pheromone shutdown, TraB BRM88_11325 c05e027cb9b1df79c276490f1c7e2378 406 TIGRFAM TIGR00261 traB: TraB family protein 28 403 7.8E-77 T 31-10-2018 IPR005230 Pheromone shutdown, TraB, bacterial/archaeal BRM88_22085 40f4f912952906476b6bd133d8dcd1eb 191 SUPERFAMILY SSF52833 69 189 2.54E-7 T 31-10-2018 IPR036249 Thioredoxin-like superfamily BRM88_04840 ed4c808882a5ed2423f2c6538377a8d2 57 Pfam PF03030 Inorganic H+ pyrophosphatase 14 55 9.2E-9 T 31-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BRM88_07115 0ed86c78b3dcc64d8b7d5b9780adced7 199 Pfam PF01810 LysE type translocator 17 198 2.0E-20 T 31-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BRM88_12625 4fe6ed35a4ce65369cec996fe3ed5ccf 139 Pfam PF13018 Extended Signal Peptide of Type V secretion system 23 46 2.3E-7 T 31-10-2018 IPR024973 ESPR domain BRM88_05585 6ff857006ec741d886325524e5a6aa91 443 Gene3D G3DSA:1.20.1250.20 9 434 3.1E-32 T 31-10-2018 BRM88_05585 6ff857006ec741d886325524e5a6aa91 443 SUPERFAMILY SSF103473 13 436 1.03E-36 T 31-10-2018 IPR036259 MFS transporter superfamily BRM88_05585 6ff857006ec741d886325524e5a6aa91 443 Pfam PF07690 Major Facilitator Superfamily 21 391 6.6E-20 T 31-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BRM88_01070 ec02c8aaa13e962ca5b12598f5bb6db4 563 Pfam PF11394 Protein of unknown function (DUF2875) 103 551 9.9E-170 T 31-10-2018 IPR021531 Protein of unknown function DUF2875 BRM88_04640 e4943c8089f2ebe2b89e3308be0e4d53 61 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 4 59 3.4E-16 T 31-10-2018 IPR019201 Protein of unknown function DUF2065 BRM88_03915 82bb3a1a0b4affe0a08a1cb3d2a44da5 387 Gene3D G3DSA:3.90.550.10 3 234 4.7E-27 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03915 82bb3a1a0b4affe0a08a1cb3d2a44da5 387 SUPERFAMILY SSF53448 6 235 2.41E-34 T 31-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BRM88_03915 82bb3a1a0b4affe0a08a1cb3d2a44da5 387 Pfam PF00535 Glycosyl transferase family 2 12 128 2.8E-10 T 31-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 793 824 1.5E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 759 790 6.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 827 858 8.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 419 450 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 657 688 2.0E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 962 991 4.3E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 589 620 1.2E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 385 416 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 861 892 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 521 552 9.5E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 623 654 3.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 555 586 8.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 725 756 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 351 382 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 928 959 4.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 895 925 1.1E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 487 518 2.3E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 317 348 1.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 453 484 4.3E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_16070 0bfacca4b965a40f52fb5bc138166655 1267 Pfam PF03377 TAL effector repeat 691 722 8.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14215 b69c481b15a476d34874a5ed1e785efd 556 SUPERFAMILY SSF51126 85 487 1.29E-55 T 31-10-2018 IPR011050 Pectin lyase fold/virulence factor BRM88_14215 b69c481b15a476d34874a5ed1e785efd 556 Gene3D G3DSA:2.160.20.10 72 489 1.3E-87 T 31-10-2018 IPR012334 Pectin lyase fold BRM88_14215 b69c481b15a476d34874a5ed1e785efd 556 Pfam PF00295 Glycosyl hydrolases family 28 118 446 1.1E-41 T 31-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 BRM88_05740 63d8a0e81ab85efb452321c90eab1e9d 149 Gene3D G3DSA:2.60.120.1140 24 145 2.6E-39 T 31-10-2018 IPR038695 Saro_0823-like superfamily BRM88_05740 63d8a0e81ab85efb452321c90eab1e9d 149 Pfam PF02643 Uncharacterized ACR, COG1430 34 140 3.1E-31 T 31-10-2018 IPR003795 Protein of unknown function DUF192 BRM88_04240 920d5dedede93db7e80e2036c4c075e4 318 Pfam PF13936 Helix-turn-helix domain 3 45 2.7E-16 T 31-10-2018 IPR025246 Transposase IS30-like HTH domain BRM88_04240 920d5dedede93db7e80e2036c4c075e4 318 SUPERFAMILY SSF53098 165 308 3.95E-21 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04240 920d5dedede93db7e80e2036c4c075e4 318 Pfam PF00665 Integrase core domain 174 266 1.8E-7 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_21695 8d9d8e4983a004dc6d46718761c896aa 94 PIRSF PIRSF028784 4 94 4.0E-26 T 31-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BRM88_21695 8d9d8e4983a004dc6d46718761c896aa 94 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 36 87 1.2E-18 T 31-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BRM88_05970 8608c84128903e2082a1f362b445a122 585 Pfam PF13584 Oxygen tolerance 23 492 9.9E-75 T 31-10-2018 IPR025738 Aerotolerance-related protein BatD BRM88_15840 518d72182a1653968359b60f68b6fb65 253 Pfam PF02698 DUF218 domain 68 231 2.2E-26 T 31-10-2018 IPR003848 Domain of unknown function DUF218 BRM88_15840 518d72182a1653968359b60f68b6fb65 253 Gene3D G3DSA:3.40.50.620 100 206 1.1E-5 T 31-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BRM88_05305 04efa2a9e8b2af8586c9778ec8174182 87 Pfam PF05488 PAAR motif 9 77 1.6E-17 T 31-10-2018 IPR008727 PAAR motif BRM88_05305 04efa2a9e8b2af8586c9778ec8174182 87 Gene3D G3DSA:2.60.200.60 9 82 6.7E-8 T 31-10-2018 BRM88_05320 04efa2a9e8b2af8586c9778ec8174182 87 Pfam PF05488 PAAR motif 9 77 1.6E-17 T 31-10-2018 IPR008727 PAAR motif BRM88_05320 04efa2a9e8b2af8586c9778ec8174182 87 Gene3D G3DSA:2.60.200.60 9 82 6.7E-8 T 31-10-2018 BRM88_12880 8d1a2a327f4c92c7245a081c6065a5fa 186 Pfam PF11159 Protein of unknown function (DUF2939) 12 104 1.4E-25 T 31-10-2018 IPR021330 Protein of unknown function DUF2939 BRM88_02910 eae8c078cac98442e97c2d67a3be182f 200 Pfam PF11304 Protein of unknown function (DUF3106) 53 116 8.3E-10 T 31-10-2018 IPR021455 Protein of unknown function DUF3106 BRM88_08945 1fcb5a292195276bb903e5b671e3b12b 235 Pfam PF15648 Restriction endonuclease fold toxin 5 135 212 1.9E-16 T 31-10-2018 IPR028904 Tox-REase-5 domain BRM88_03620 00dd480951a0785cd995af8aa3877660 234 SUPERFAMILY SSF56935 100 207 1.4E-5 T 31-10-2018 BRM88_02385 71617b86fcd791b97d44d77e7e82c60e 266 Pfam PF06114 IrrE N-terminal-like domain 96 258 1.5E-11 T 31-10-2018 IPR010359 IrrE N-terminal-like domain BRM88_02385 71617b86fcd791b97d44d77e7e82c60e 266 Gene3D G3DSA:3.40.390.50 47 179 1.6E-7 T 31-10-2018 BRM88_02175 0a6b91c2c5342ac8331ae6abb8685823 150 Gene3D G3DSA:1.10.890.40 66 141 1.6E-12 T 31-10-2018 BRM88_21835 bce5b449f4b32cc4a5a8a00dbe5a6c76 322 Pfam PF01609 Transposase DDE domain 135 310 1.1E-32 T 31-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 BRM88_21835 bce5b449f4b32cc4a5a8a00dbe5a6c76 322 Pfam PF05598 Transposase domain (DUF772) 50 122 2.2E-19 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_16415 e9f81c68183ffdb81fd79dfe799b89cc 77 Pfam PF02535 ZIP Zinc transporter 20 75 4.2E-10 T 31-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 BRM88_08595 f9df3569600ccadda2f266cd42b8eb13 635 Pfam PF02705 K+ potassium transporter 24 556 2.1E-213 T 31-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 BRM88_08595 f9df3569600ccadda2f266cd42b8eb13 635 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 15 635 33.598 T 31-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup BRM88_15645 de4031e626eb3095da2a25ea51d5d91d 75 SUPERFAMILY SSF48024 9 49 9.02E-5 T 31-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BRM88_15645 de4031e626eb3095da2a25ea51d5d91d 75 Pfam PF00772 DnaB-like helicase N terminal domain 11 49 5.6E-5 T 31-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BRM88_16025 2ee167d27e68158fba72cb7a39c616b0 253 Pfam PF13490 Putative zinc-finger 47 80 4.1E-5 T 31-10-2018 IPR027383 Putative zinc-finger BRM88_15750 442b45c1f75b17f0f386b6920891329e 204 Pfam PF09335 SNARE associated Golgi protein 55 163 4.3E-8 T 31-10-2018 IPR032816 SNARE associated Golgi protein BRM88_03920 ecf6d8ed590bbbcacf384ee6731e6751 350 Pfam PF01757 Acyltransferase family 12 328 1.6E-21 T 31-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BRM88_06015 c02fe45171dacc6e7f0e2d0bd2730349 391 SUPERFAMILY SSF51695 49 339 1.36E-26 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_06015 c02fe45171dacc6e7f0e2d0bd2730349 391 Pfam PF16670 Phosphoinositide phospholipase C, Ca2+-dependent 49 377 3.1E-128 T 31-10-2018 IPR032075 Phosphoinositide phospholipase C, Ca2+-dependent BRM88_06015 c02fe45171dacc6e7f0e2d0bd2730349 391 Gene3D G3DSA:3.20.20.190 142 275 2.9E-39 T 31-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BRM88_11375 839ae00fbf2f0ea0400106223eaef49a 101 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 80 2.2E-8 T 31-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 BRM88_05520 8f86c1760f90cff3cbbf79095f8a2beb 439 Pfam PF13546 DDE superfamily endonuclease 18 291 2.6E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_05520 8f86c1760f90cff3cbbf79095f8a2beb 439 SUPERFAMILY SSF53098 18 403 2.58E-30 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_17795 8966be09ddea06b653997820b0901ecb 63 SUPERFAMILY SSF103481 1 39 4.97E-6 T 31-10-2018 BRM88_13840 b684539d3ef75b7e635b219738912bb2 439 SUPERFAMILY SSF53098 18 403 1.74E-29 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_13840 b684539d3ef75b7e635b219738912bb2 439 Pfam PF13546 DDE superfamily endonuclease 18 291 3.1E-91 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_08100 4fb3c81ac4ef1ee36c9b6f5b9997f178 439 Pfam PF13546 DDE superfamily endonuclease 18 291 6.1E-90 T 31-10-2018 IPR038721 Transposase IS701-like, DDE domain BRM88_08100 4fb3c81ac4ef1ee36c9b6f5b9997f178 439 SUPERFAMILY SSF53098 18 403 1.52E-26 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_10345 2154072535d1404fc899930e2bcab682 183 Pfam PF05229 Spore Coat Protein U domain 34 180 1.8E-33 T 31-10-2018 IPR007893 Spore coat protein U BRM88_10345 2154072535d1404fc899930e2bcab682 183 SMART SM00972 120 180 1.9E-20 T 31-10-2018 IPR007893 Spore coat protein U BRM88_01895 4ae4a1ccfbe6fc99cb5140e86d43890b 233 Pfam PF07277 SapC 7 223 1.4E-65 T 31-10-2018 IPR010836 SapC BRM88_20735 ea0515af8e16571fd331da0c00ac0245 245 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 2 230 2.9E-10 T 31-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BRM88_20735 ea0515af8e16571fd331da0c00ac0245 245 Gene3D G3DSA:3.60.10.10 1 242 2.2E-36 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_20735 ea0515af8e16571fd331da0c00ac0245 245 SUPERFAMILY SSF56219 1 241 7.72E-30 T 31-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BRM88_19410 792dd8c0eb25e11fd1f7f76252cfb4a7 191 Gene3D G3DSA:3.40.109.10 7 169 1.9E-34 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BRM88_19410 792dd8c0eb25e11fd1f7f76252cfb4a7 191 PIRSF PIRSF000232 1 191 1.4E-60 T 31-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like BRM88_19410 792dd8c0eb25e11fd1f7f76252cfb4a7 191 SUPERFAMILY SSF55469 7 186 3.53E-30 T 31-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BRM88_19410 792dd8c0eb25e11fd1f7f76252cfb4a7 191 Pfam PF00881 Nitroreductase family 12 168 2.1E-20 T 31-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BRM88_03435 61d738b825842a326efeaad99fd821ba 163 Gene3D G3DSA:2.40.128.200 82 158 1.7E-12 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily BRM88_03435 61d738b825842a326efeaad99fd821ba 163 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 87 150 1.4E-9 T 31-10-2018 IPR018660 C-type lysozyme inhibitor BRM88_03435 61d738b825842a326efeaad99fd821ba 163 SUPERFAMILY SSF141488 82 155 3.79E-14 T 31-10-2018 IPR036328 C-type lysozyme inhibitor superfamily BRM88_14380 70956264af5982975507252ed5153fac 323 Pfam PF01963 TraB family 50 312 1.2E-79 T 31-10-2018 IPR002816 Pheromone shutdown, TraB BRM88_02365 35d2d5e852041ab46fdfac6efc9394a5 347 Pfam PF04332 Protein of unknown function (DUF475) 49 339 3.1E-128 T 31-10-2018 IPR007427 Protein of unknown function DUF475 BRM88_05435 f9d572a74ef694ebaab8e22c748af161 622 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 51 211 3.7E-15 T 31-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BRM88_24185 bd08d086e2dce0510c69b1d5ed0d6f62 83 Pfam PF04226 Transglycosylase associated protein 33 79 2.8E-12 T 31-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BRM88_20370 a8ec15e70f6a12b3e18b21294e96c311 148 Pfam PF05258 Protein of unknown function (DUF721) 31 96 7.5E-12 T 31-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 BRM88_12760 272eaa562c9cf6a00b4633e3e906cd5f 228 Pfam PF11218 Protein of unknown function (DUF3011) 30 225 1.7E-88 T 31-10-2018 IPR021381 Protein of unknown function DUF3011 BRM88_03580 38eb15483283735adcee65400abb477a 185 Pfam PF07301 Protein of unknown function (DUF1453) 14 128 1.8E-6 T 31-10-2018 IPR009916 Protein of unknown function DUF1453 BRM88_04600 b636e8e235c0dd48f6cbdb9c04ef423b 320 SUPERFAMILY SSF53098 161 306 1.24E-23 T 31-10-2018 IPR012337 Ribonuclease H-like superfamily BRM88_04600 b636e8e235c0dd48f6cbdb9c04ef423b 320 Gene3D G3DSA:3.30.420.10 161 316 5.3E-7 T 31-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BRM88_04600 b636e8e235c0dd48f6cbdb9c04ef423b 320 Pfam PF00665 Integrase core domain 161 263 3.1E-8 T 31-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BRM88_10210 fd1219d3f32046a3335f3c9ab3253364 470 Pfam PF12040 Domain of unknown function (DUF3526) 274 429 3.4E-35 T 31-10-2018 IPR021913 Protein of unknown function DUF3526 BRM88_21010 1698ecb6c540c96265304a16baab51c6 120 Pfam PF04972 BON domain 48 115 1.0E-18 T 31-10-2018 IPR007055 BON domain BRM88_21010 1698ecb6c540c96265304a16baab51c6 120 SMART SM00749 53 116 4.5E-9 T 31-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BRM88_11660 18243416970dc77ae7c0fa9ce6be66b9 94 Pfam PF13828 Domain of unknown function (DUF4190) 11 74 5.4E-23 T 31-10-2018 IPR025241 Domain of unknown function DUF4190 BRM88_06745 a0763716fc1a227358581db10a1f1556 263 Pfam PF01578 Cytochrome C assembly protein 39 258 6.6E-33 T 31-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BRM88_07545 ef886387df49b4e286caee3743b68988 77 Pfam PF11745 Protein of unknown function (DUF3304) 2 29 7.5E-5 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_22150 d940168bbf80efaa1f9e33e31ff7c96e 71 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 6.5E-13 T 31-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BRM88_22150 d940168bbf80efaa1f9e33e31ff7c96e 71 Gene3D G3DSA:1.10.10.1100 1 55 9.7E-20 T 31-10-2018 BRM88_07515 8f36afa7d16f8e9d26e6140488c35904 185 Pfam PF11745 Protein of unknown function (DUF3304) 22 138 2.6E-29 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_07505 1b6c96b3474ed8c817253b78018fbe0d 182 Pfam PF11745 Protein of unknown function (DUF3304) 22 135 8.5E-26 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_18420 15889a5ee30cb1c7dd47ecb46831482e 64 SUPERFAMILY SSF116734 1 57 2.62E-8 T 31-10-2018 BRM88_04205 287516393571b852c45d2f5477a0e537 155 Pfam PF06271 RDD family 14 144 1.2E-19 T 31-10-2018 IPR010432 RDD BRM88_14050 26d382bce9e4cabb1fcaef6a2d4f1f9f 86 Pfam PF03795 YCII-related domain 10 84 1.7E-8 T 31-10-2018 IPR005545 YCII-related BRM88_14050 26d382bce9e4cabb1fcaef6a2d4f1f9f 86 SUPERFAMILY SSF54909 3 84 8.85E-14 T 31-10-2018 IPR011008 Dimeric alpha-beta barrel BRM88_17100 e249569258d3208bc62cf986bed4455c 169 Pfam PF14341 PilX N-terminal 15 62 2.0E-8 T 31-10-2018 IPR025746 Type 4 fimbrial biogenesis protein PilX, N-terminal domain BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 656 687 1.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 690 720 9.8E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 791 822 8.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 520 551 2.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 486 517 1.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 385 415 3.6E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 588 619 1.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 351 382 3.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 418 449 2.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 723 754 5.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 757 788 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 556 585 3.7E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 825 856 2.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 317 348 3.7E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 859 888 3.9E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 622 653 2.2E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 895 919 0.043 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06300 a2cba73cac70ec309772eca1cf280cc5 1164 Pfam PF03377 TAL effector repeat 452 483 2.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_18710 a29cf26dca3d0aa7886e5e78c3413d50 159 Pfam PF11745 Protein of unknown function (DUF3304) 17 119 5.2E-25 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_02660 1a7d9ae62a65fed427f5f06f5d1e0798 296 Pfam PF03186 CobD/Cbib protein 9 166 1.3E-9 T 31-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 BRM88_18675 aecd6c0043ffbdf56fc49b6c60acf04f 198 Pfam PF11745 Protein of unknown function (DUF3304) 40 154 1.1E-21 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_21960 9701dbff79c6848048c81d5bfb21ec41 144 Pfam PF05360 yiaA/B two helix domain 73 125 1.4E-20 T 31-10-2018 IPR008024 YiaAB two helix BRM88_21960 9701dbff79c6848048c81d5bfb21ec41 144 Pfam PF05360 yiaA/B two helix domain 10 62 9.2E-21 T 31-10-2018 IPR008024 YiaAB two helix BRM88_15870 af393f8ae356b10d6bd3cf55e2e7a890 166 Gene3D G3DSA:2.30.110.10 6 165 6.3E-52 T 31-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BRM88_15870 af393f8ae356b10d6bd3cf55e2e7a890 166 SUPERFAMILY SSF50475 9 139 8.61E-38 T 31-10-2018 BRM88_15870 af393f8ae356b10d6bd3cf55e2e7a890 166 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 8 154 2.3E-51 T 31-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain BRM88_09060 d82ac10064f05a92902793129aa213d8 26 Pfam PF08042 PqqA family 3 21 1.6E-7 T 31-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 BRM88_09060 d82ac10064f05a92902793129aa213d8 26 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 23 3.6E-8 T 31-10-2018 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 BRM88_09965 7e7fcef0e20dec63e88d880d98cf9f77 64 Pfam PF09791 Oxidoreductase-like protein, N-terminal 14 52 1.6E-13 T 31-10-2018 IPR019180 Oxidoreductase-like, N-terminal BRM88_03010 2dbb3eed20719833c263aee096aad7f0 425 Pfam PF04932 O-Antigen ligase 189 344 6.8E-16 T 31-10-2018 IPR007016 O-antigen ligase-related BRM88_06360 7cfbbd0edf6919076c9b98857bd59e80 83 SUPERFAMILY SSF142921 4 73 2.35E-6 T 31-10-2018 IPR036930 WGR domain superfamily BRM88_06840 5f590e30b80d4ad6e63ae812dc46ace5 101 Gene3D G3DSA:3.40.1440.10 2 100 5.2E-28 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BRM88_06840 5f590e30b80d4ad6e63ae812dc46ace5 101 SUPERFAMILY SSF82771 6 77 7.98E-12 T 31-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BRM88_06840 5f590e30b80d4ad6e63ae812dc46ace5 101 Pfam PF01541 GIY-YIG catalytic domain 7 76 1.4E-11 T 31-10-2018 IPR000305 GIY-YIG endonuclease BRM88_14510 bbe3da7fc664c7201b8961149836e614 62 Pfam PF01402 Ribbon-helix-helix protein, copG family 1 36 5.0E-7 T 31-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 BRM88_12425 3349b0b31206a5ac1eaff3e9997fbe1a 277 Gene3D G3DSA:3.30.565.40 45 157 1.0E-5 T 31-10-2018 BRM88_16950 52a1990666f74c95e464e3d5bed3ac7a 264 Pfam PF04230 Polysaccharide pyruvyl transferase 75 209 2.4E-14 T 31-10-2018 IPR007345 Polysaccharide pyruvyl transferase BRM88_07825 f0250bf0efcd74d4afb3d6e8d3fdac5a 159 Pfam PF05433 Glycine zipper 2TM domain 67 113 3.6E-10 T 31-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BRM88_14925 1219d4a4e9ba75532265ca489562e6a3 309 Pfam PF13503 Domain of unknown function (DUF4123) 61 156 1.1E-10 T 31-10-2018 IPR025391 Domain of unknown function DUF4123 BRM88_12145 839c17f778026b5223bf6ed998be8919 220 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 187 7.4E-30 T 31-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BRM88_10100 dfb52a931bce0819c0695978934b43c9 645 Pfam PF05960 Bacterial protein of unknown function (DUF885) 101 636 1.3E-168 T 31-10-2018 IPR010281 Protein of unknown function DUF885 BRM88_08620 dae21b22ed8df9823d7e24cfb3e03d8b 346 Gene3D G3DSA:3.30.1150.10 216 346 1.8E-15 T 31-10-2018 BRM88_08620 dae21b22ed8df9823d7e24cfb3e03d8b 346 TIGRFAM TIGR02794 tolA_full: protein TolA 18 340 7.8E-44 T 31-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 BRM88_08620 dae21b22ed8df9823d7e24cfb3e03d8b 346 SUPERFAMILY SSF74653 254 342 6.47E-11 T 31-10-2018 BRM88_08620 dae21b22ed8df9823d7e24cfb3e03d8b 346 Pfam PF13103 TonB C terminal 257 341 7.8E-8 T 31-10-2018 BRM88_04075 a9c53b17c83bc0d9505f1685ed0f7802 155 SUPERFAMILY SSF102220 113 147 4.97E-5 T 31-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BRM88_04325 47ecabe2794f42373aa1d90bf4462c5c 191 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 2 183 2.2E-23 T 31-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BRM88_04325 47ecabe2794f42373aa1d90bf4462c5c 191 Pfam PF04973 Nicotinamide mononucleotide transporter 2 180 2.8E-48 T 31-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BRM88_07555 7b3c686a46c8061064dd3ff3e072a2b0 195 Pfam PF11745 Protein of unknown function (DUF3304) 36 147 9.9E-30 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_11270 9ede6e980727d7b36a8fc78eb9e720d3 301 Hamap MF_01805 Segregation and condensation protein A [scpA]. 47 277 21.959 T 31-10-2018 IPR003768 Segregation and condensation protein A BRM88_11270 9ede6e980727d7b36a8fc78eb9e720d3 301 Pfam PF02616 Segregation and condensation protein ScpA 64 274 3.0E-28 T 31-10-2018 IPR003768 Segregation and condensation protein A BRM88_22305 f287a260e711fd81f1b2530356c72778 394 ProSitePatterns PS01007 Transposases, Mutator family, signature. 223 247 - T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_22305 f287a260e711fd81f1b2530356c72778 394 Pfam PF00872 Transposase, Mutator family 11 368 6.6E-107 T 31-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BRM88_22095 32d2e858fba7afd0c379a126dfd3e7fa 72 Pfam PF11137 Protein of unknown function (DUF2909) 8 65 2.2E-22 T 31-10-2018 IPR021313 Protein of unknown function DUF2909 BRM88_14550 a2afcfed2d70e18a799556248eef7c11 138 Pfam PF11743 Protein of unknown function (DUF3301) 29 121 1.9E-28 T 31-10-2018 IPR021732 Protein of unknown function DUF3301 BRM88_10115 5a855d6a13bded6d706744a4202766bb 224 Pfam PF04367 Protein of unknown function (DUF502) 80 180 4.3E-27 T 31-10-2018 IPR007462 Protein of unknown function DUF502 BRM88_15585 9cf01f99548cf2a5d9e47d9e8c61e7b5 65 SUPERFAMILY SSF53474 4 51 8.59E-6 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_03195 e2e7cdd3c22994c7c3419ff5b1ffb0e7 104 Pfam PF03692 Putative zinc- or iron-chelating domain 9 78 3.6E-9 T 31-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein BRM88_20100 b8a9a10c04aa03009e6bf2a0dd050778 827 Pfam PF02687 FtsX-like permease family 733 820 3.1E-7 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BRM88_20100 b8a9a10c04aa03009e6bf2a0dd050778 827 Pfam PF02687 FtsX-like permease family 285 376 5.5E-10 T 31-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BRM88_06685 b4627e3a45687b904efa4b094007c071 90 Pfam PF04226 Transglycosylase associated protein 40 86 8.0E-11 T 31-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BRM88_00455 be9395d80c4ca06b4efae090dfcc81e3 169 TIGRFAM TIGR02559 HrpB7: type III secretion protein HrpB7 6 159 1.3E-41 T 31-10-2018 IPR013392 Type III secretion protein HrpB7 BRM88_00455 be9395d80c4ca06b4efae090dfcc81e3 169 Pfam PF09486 Bacterial type III secretion protein (HrpB7) 6 159 1.1E-33 T 31-10-2018 IPR013392 Type III secretion protein HrpB7 BRM88_11885 ed56bdca8f1b6098b598b70eda88fd7f 215 Pfam PF05857 TraX protein 6 205 1.3E-41 T 31-10-2018 IPR008875 TraX BRM88_15630 bcfd27b626e9150e4f7f2cd8866d732f 76 Gene3D G3DSA:1.10.530.10 9 76 4.5E-16 T 31-10-2018 BRM88_15630 bcfd27b626e9150e4f7f2cd8866d732f 76 SUPERFAMILY SSF53955 9 75 5.62E-17 T 31-10-2018 IPR023346 Lysozyme-like domain superfamily BRM88_11875 9a3851682f6bdbc35d5b1aaf98fa91aa 86 Pfam PF12375 Phage protein 10 58 5.9E-8 T 31-10-2018 IPR021077 Bacteriophage phi-Lf, Orf112 BRM88_19315 d9405a6c5d29cfcc392c937d45aa3796 115 Pfam PF09842 Predicted membrane protein (DUF2069) 12 94 2.7E-8 T 31-10-2018 IPR018643 Protein of unknown function DUF2069, membrane BRM88_24520 b0dc16d2677f11d5355accda2aff886b 250 Pfam PF15579 Immunity protein 52 169 241 7.1E-19 T 31-10-2018 IPR028969 Immunity protein 52 BRM88_16515 4a219c7d3ffcd21fd96a404821dfa33b 85 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 40 59 5.9E-6 T 31-10-2018 IPR019626 Stress-induced protein, KGG, repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 832 863 3.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 526 557 6.6E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 968 999 5.5E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 798 829 8.7E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 391 422 2.6E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 934 965 5.5E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 594 625 2.8E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 1036 1067 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 900 931 3.8E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 459 490 1.1E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 1106 1130 0.052 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 1002 1033 1.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 289 320 3.8E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 866 897 2.2E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 425 456 1.3E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 662 693 1.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 493 523 1.2E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 323 354 6.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 730 761 1.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 357 388 5.0E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 696 727 6.0E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 1070 1099 2.9E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 764 795 4.4E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 560 591 9.9E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_11105 9496eba7c3268eaa8a0f2f0a2c3d4c4a 1375 Pfam PF03377 TAL effector repeat 628 659 7.8E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_14385 50de5284ed6e490fe64b2dcc960db725 313 Pfam PF07920 Protein of unknown function (DUF1684) 171 307 2.7E-43 T 31-10-2018 IPR012467 Protein of unknown function DUF1684 BRM88_19855 1ed4a8ac39c07f3dc4ff9bae017f716c 233 SUPERFAMILY SSF103481 25 118 4.05E-6 T 31-10-2018 BRM88_22055 aaed0f60ce890527bd86001c4ed38d68 77 Gene3D G3DSA:3.40.50.1820 1 74 6.0E-15 T 31-10-2018 IPR029058 Alpha/Beta hydrolase fold BRM88_01000 875789c217263d51fb2bba2a503e6f26 92 Pfam PF04380 Membrane fusogenic activity 2 78 7.8E-27 T 31-10-2018 IPR007475 Membrane fusogenic activity BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 969 993 0.046 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 593 624 2.7E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 763 794 1.0E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 323 354 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 526 556 3.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 831 862 4.4E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 391 422 8.9E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 357 388 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 559 590 2.1E-13 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 492 523 3.9E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 627 658 3.7E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 729 760 6.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 797 828 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 933 962 4.2E-12 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 695 726 1.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 899 930 9.5E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 865 896 6.1E-16 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 661 692 6.1E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 289 320 1.6E-14 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 458 489 8.6E-17 T 31-10-2018 IPR005042 TAL effector repeat BRM88_06335 945fac87ff2fc13aab7eb519d72a963f 1238 Pfam PF03377 TAL effector repeat 425 455 3.9E-15 T 31-10-2018 IPR005042 TAL effector repeat BRM88_01655 2f010f4a8157eae1f26fa0b525984102 493 Pfam PF05598 Transposase domain (DUF772) 75 149 3.7E-14 T 31-10-2018 IPR008490 Transposase InsH, N-terminal BRM88_07560 b96f2905ed6b34b487a873872da22950 159 Pfam PF11745 Protein of unknown function (DUF3304) 1 111 5.4E-30 T 31-10-2018 IPR021733 Protein of unknown function DUF3304 BRM88_01825 511cd60bb323009ec3e9678dbe79fafa 249 Pfam PF12686 Protein of unknown function (DUF3800) 8 215 1.1E-24 T 31-10-2018 IPR024524 Protein of unknown function DUF3800