locus-tag	class	description
GDR29_00140	COG0151	Belongs to the GarS family
GDR29_00185	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
GDR29_00250	COG0511	ligase activity, forming carbon-carbon bonds
GDR29_00255	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
GDR29_00270	COG1324	tolerance protein
GDR29_00385	COG0758	DNA mediated transformation
GDR29_00395	COG0242	peptide deformylase activity
GDR29_00400	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
GDR29_00460	COG1560	Kdo2-lipid A biosynthetic process
GDR29_00720	COG1271	oxidase subunit
GDR29_00735	COG2204	response regulator
GDR29_00790	COG2972	Histidine kinase
GDR29_00910	COG1131	(ABC) transporter
GDR29_00930	COG1404	Belongs to the peptidase S8 family
GDR29_01050	COG2813	Specifically methylates the guanine in position
GDR29_01135	COG0508	dehydrogenase complex catalyzes the overall conversion of
GDR29_01190	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GDR29_01195	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GDR29_01205	COG0355	proton-transporting ATP synthase activity, rotational mechanism
GDR29_01260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GDR29_01370	COG1956	GAF domain-containing protein
GDR29_01375	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
GDR29_01385	COG0720	synthase
GDR29_01595	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GDR29_01830	COG3166	PFAM Fimbrial assembly family protein
GDR29_01915	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
GDR29_01965	COG1399	metal-binding, possibly nucleic acid-binding protein
GDR29_01990	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_01995	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GDR29_02005	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
GDR29_02045	COG3829	transcription factor binding
GDR29_02135	COG0678	peroxiredoxin activity
GDR29_02155	COG0330	HflC and HflK could
GDR29_02160	COG0330	HflC and HflK could
GDR29_02245	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
GDR29_02315	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
GDR29_02385	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
GDR29_02445	COG0625	glutathione transferase activity
GDR29_02455	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GDR29_02795	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GDR29_02810	COG0631	protein serine/threonine phosphatase activity
GDR29_02890	COG0582	viral genome integration into host DNA
GDR29_02905	COG3642	lipopolysaccharide core region biosynthetic process
GDR29_02910	COG1234	tRNA 3'-trailer cleavage
GDR29_02925	COG0315	cyclic pyranopterin monophosphate synthase activity
GDR29_02930	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
GDR29_02935	COG0314	molybdopterin synthase activity
GDR29_02970	COG0537	adenosine 5'-monophosphoramidase activity
GDR29_02990	COG0714	Associated with various cellular activities
GDR29_03010	COG0242	peptide deformylase activity
GDR29_03160	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_03165	COG2851	Citrate transporter
GDR29_03215	COG0583	DNA-binding transcription factor activity
GDR29_03290	COG1773	rubredoxin
GDR29_03305	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GDR29_03505	COG0714	Associated with various cellular activities
GDR29_03630	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
GDR29_03645	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GDR29_03645	COG3453	Protein conserved in bacteria
GDR29_03700	COG0745	RESPONSE REGULATOR receiver
GDR29_03745	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GDR29_03830	COG2801	Transposase and inactivated derivatives
GDR29_03910	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
GDR29_04110	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
GDR29_04120	COG1660	Displays ATPase and GTPase activities
GDR29_04130	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
GDR29_04170	COG0271	Belongs to the BolA IbaG family
GDR29_04260	COG1555	photosystem II stabilization
GDR29_04305	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
GDR29_04340	COG0228	four-way junction DNA binding
GDR29_04350	COG0336	Belongs to the RNA methyltransferase TrmD family
GDR29_04515	COG2814	Major facilitator Superfamily
GDR29_04735	COG2146	nitrite reductase [NAD(P)H] activity
GDR29_04770	COG1959	2 iron, 2 sulfur cluster binding
GDR29_04835	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
GDR29_04875	COG1678	Uncharacterized ACR, COG1678
GDR29_04945	COG0142	geranyltranstransferase activity
GDR29_05000	COG1741	Belongs to the pirin family
GDR29_05130	COG1515	deoxyribonuclease V activity
GDR29_05170	COG2200	EAL domain
GDR29_05170	COG2202	Pas domain
GDR29_05170	COG2199	diguanylate cyclase activity
GDR29_05175	COG0835	chemotaxis
GDR29_05215	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
GDR29_05330	COG0735	belongs to the Fur family
GDR29_05390	COG0084	hydrolase, TatD family'
GDR29_05405	COG1960	acyl-CoA dehydrogenase activity
GDR29_05455	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_05585	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
GDR29_05605	COG0745	RESPONSE REGULATOR receiver
GDR29_05775	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
GDR29_05785	COG4969	Belongs to the N-Me-Phe pilin family
GDR29_05840	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
GDR29_05975	COG0824	Thioesterase
GDR29_05990	COG0211	Belongs to the bacterial ribosomal protein bL27 family
GDR29_06000	COG0268	Binds directly to 16S ribosomal RNA
GDR29_06020	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GDR29_06045	COG1845	cytochrome c oxidase, subunit III
GDR29_06090	COG3209	COG3209 Rhs family protein
GDR29_06220	COG0824	Thioesterase
GDR29_06285	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
GDR29_06455	COG3179	chitinase
GDR29_06500	COG4695	Portal protein
GDR29_06695	COG0189	ligase activity
GDR29_06710	COG0835	chemotaxis
GDR29_06770	COG3142	Participates in the control of copper homeostasis
GDR29_06830	COG3537	Alpha-1,2-mannosidase
GDR29_06950	COG0837	glucose binding
GDR29_07005	COG0509	glycine decarboxylation via glycine cleavage system
GDR29_07105	COG1272	protein, Hemolysin III
GDR29_07115	COG0739	heme binding
GDR29_07120	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GDR29_07150	COG2353	YceI-like domain
GDR29_07175	COG0745	RESPONSE REGULATOR receiver
GDR29_07175	COG2205	protein histidine kinase activity
GDR29_07175	COG3292	Two component regulator propeller
GDR29_07310	COG1381	Involved in DNA repair and RecF pathway recombination
GDR29_07325	COG2954	triphosphatase activity
GDR29_07360	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
GDR29_07365	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
GDR29_07370	COG1278	Cold shock
GDR29_07395	COG1793	dna ligase
GDR29_07405	COG1793	dna ligase
GDR29_07405	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GDR29_07460	COG1451	nucleotide metabolic process
GDR29_07475	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
GDR29_07610	COG0251	oxidation-reduction process
GDR29_07685	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GDR29_07685	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GDR29_07710	COG2040	homocysteine
GDR29_07760	COG2895	sulfate adenylyltransferase (ATP) activity
GDR29_07760	COG0529	Catalyzes the synthesis of activated sulfate
GDR29_07845	COG0825	malonyl-CoA metabolic process
GDR29_07865	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GDR29_07870	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GDR29_07985	COG1393	Belongs to the ArsC family
GDR29_08035	COG2207	Transcriptional regulator
GDR29_08100	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
GDR29_08110	COG1960	acyl-CoA dehydrogenase activity
GDR29_08125	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
GDR29_08135	COG2914	Belongs to the UPF0125 (RnfH) family
GDR29_08200	COG0583	DNA-binding transcription factor activity
GDR29_08330	COG1131	(ABC) transporter
GDR29_08360	COG2900	Belongs to the SlyX family
GDR29_08405	COG2226	methyltransferase
GDR29_08590	COG2801	Transposase and inactivated derivatives
GDR29_08730	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
GDR29_08865	COG2350	Protein conserved in bacteria
GDR29_08910	COG0395	ABC-type sugar transport system, permease component
GDR29_08970	COG0776	regulation of translation
GDR29_09190	COG1183	phosphatidylcholine synthase activity
GDR29_09405	COG0131	Imidazoleglycerol-phosphate dehydratase
GDR29_09405	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
GDR29_09425	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
GDR29_09425	COG0140	phosphoribosyl-ATP diphosphatase activity
GDR29_09460	COG0653	protein targeting
GDR29_09625	COG2801	Transposase and inactivated derivatives
GDR29_09725	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GDR29_09735	COG1663	tetraacyldisaccharide 4'-kinase activity
GDR29_09750	COG0811	peptide transport
GDR29_09850	COG0129	dihydroxy-acid dehydratase activity
GDR29_09855	COG0800	Aldolase
GDR29_10050	COG3706	GGDEF domain
GDR29_10050	COG4251	negative regulation of phosphorylation
GDR29_10050	COG2203	Gaf domain
GDR29_10050	COG5001	Diguanylate cyclase
GDR29_10295	COG1228	amidohydrolase
GDR29_10325	COG2963	transposase activity
GDR29_10350	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
GDR29_10385	COG0360	Binds together with S18 to 16S ribosomal RNA
GDR29_10390	COG0316	Belongs to the HesB IscA family
GDR29_10590	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
GDR29_10610	COG0704	Plays a role in the regulation of phosphate uptake
GDR29_10620	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GDR29_10680	COG1862	Preprotein translocase
GDR29_10790	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GDR29_10805	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GDR29_10810	COG0742	ribosomal rna small subunit methyltransferase
GDR29_10940	COG0183	Belongs to the thiolase family
GDR29_10965	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GDR29_10995	COG0492	ferredoxin-NADP+ reductase activity
GDR29_11090	COG0784	Response regulator, receiver
GDR29_11090	COG0835	chemotaxis
GDR29_11100	COG1558	bacterial-type flagellum-dependent cell motility
GDR29_11115	COG4787	bacterial-type flagellum-dependent cell motility
GDR29_11220	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_11265	COG1677	Flagellar hook-basal body complex protein FliE
GDR29_11690	COG2166	iron-sulfur cluster assembly
GDR29_11775	COG4677	pectinesterase activity
GDR29_11850	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GDR29_11900	COG0625	glutathione transferase activity
GDR29_11915	COG4681	YaeQ
GDR29_12105	COG2094	Belongs to the DNA glycosylase MPG family
GDR29_12215	COG4535	Mg2 and Co2 transporter CorC
GDR29_12355	COG2733	membrane
GDR29_12625	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GDR29_12630	COG1360	Flagellar Motor Protein
GDR29_12650	COG0745	RESPONSE REGULATOR receiver
GDR29_13035	COG0477	Major facilitator Superfamily
GDR29_13070	COG0800	Aldolase
GDR29_13090	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GDR29_13115	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GDR29_13130	COG0351	phosphomethylpyrimidine kinase
GDR29_13155	COG0583	DNA-binding transcription factor activity
GDR29_13160	COG1741	Belongs to the pirin family
GDR29_13180	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GDR29_13210	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
GDR29_13295	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
GDR29_13300	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
GDR29_13315	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GDR29_13350	COG0504	CTP synthase activity
GDR29_13445	COG1136	(ABC) transporter
GDR29_13470	COG2264	protein methyltransferase activity
GDR29_13550	COG1595	DNA-templated transcription, initiation
GDR29_13585	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GDR29_13720	COG1858	cytochrome C peroxidase
GDR29_13945	COG0428	transporter
GDR29_13950	COG0428	transporter
GDR29_14260	COG0006	proline dipeptidase activity
GDR29_14270	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GDR29_14300	COG0552	protein localization to endoplasmic reticulum
GDR29_14645	COG2095	MarC family integral membrane protein
GDR29_14655	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
GDR29_14695	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
GDR29_14720	COG0779	Required for maturation of 30S ribosomal subunits
GDR29_14775	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
GDR29_14795	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GDR29_14860	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GDR29_14890	COG0135	phosphoribosylanthranilate isomerase activity
GDR29_14920	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
GDR29_14925	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
GDR29_14970	COG2826	transposase and inactivated derivatives, IS30 family
GDR29_15070	COG2311	Membrane
GDR29_15085	COG0791	NLP P60 protein
GDR29_15120	COG1722	exodeoxyribonuclease VII activity
GDR29_15125	COG0142	geranyltranstransferase activity
GDR29_15255	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
GDR29_15460	COG2022	thiamine diphosphate biosynthetic process
GDR29_15500	COG1970	mechanosensitive ion channel activity
GDR29_15580	COG2895	sulfate adenylyltransferase (ATP) activity
GDR29_15580	COG0529	Catalyzes the synthesis of activated sulfate
GDR29_15670	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
GDR29_15955	COG0732	type I restriction modification DNA specificity domain
GDR29_16280	COG3179	chitinase
GDR29_16495	COG2894	cell division
GDR29_16500	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
GDR29_16665	COG1841	ribosomal large subunit assembly
GDR29_16705	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GDR29_16710	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GDR29_16715	COG0255	Belongs to the universal ribosomal protein uL29 family
GDR29_16720	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
GDR29_16730	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GDR29_16750	COG0088	Forms part of the polypeptide exit tunnel
GDR29_16760	COG0051	transcription antitermination factor activity, RNA binding
GDR29_16785	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GDR29_16800	COG0222	ribosome binding
GDR29_16805	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
GDR29_16915	COG0521	Mo-molybdopterin cofactor biosynthetic process
GDR29_16970	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GDR29_17120	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GDR29_17160	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GDR29_17235	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GDR29_17255	COG2833	Protein of unknown function (DUF455)
GDR29_17275	COG0285	dihydrofolate synthase activity
GDR29_17330	COG4208	sulfate ABC transporter
GDR29_17335	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
GDR29_17345	COG0156	8-amino-7-oxononanoate synthase activity
GDR29_17530	COG1024	Enoyl-CoA hydratase
GDR29_17585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GDR29_17635	COG2967	ApaG domain
GDR29_17725	COG2175	clavaminate synthase activity
GDR29_17875	COG2226	methyltransferase
GDR29_17935	COG0604	alcohol dehydrogenase
GDR29_17935	COG3321	synthase
GDR29_17935	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_17970	COG0494	nUDIX hydrolase
GDR29_17985	COG1388	LysM domain
GDR29_17985	COG4942	peptidase
GDR29_17995	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
GDR29_18055	COG3116	cell division
GDR29_18105	COG1988	membrane-bound metal-dependent
GDR29_18115	COG0745	RESPONSE REGULATOR receiver
GDR29_18160	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
GDR29_18330	COG2205	protein histidine kinase activity
GDR29_18540	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
GDR29_18550	COG1609	Transcriptional regulator
GDR29_18635	COG0784	Response regulator, receiver
GDR29_18690	COG1056	cytidyltransferase-related domain
GDR29_18690	COG1051	belongs to the nudix hydrolase family
GDR29_18740	COG1686	Belongs to the peptidase S11 family
GDR29_19045	COG0659	secondary active sulfate transmembrane transporter activity
GDR29_19255	COG0456	acetyltransferase
GDR29_19340	COG2212	antiporter activity
GDR29_19345	COG1320	monovalent cation:proton antiporter activity
GDR29_19380	COG3483	tryptophan 2,3-dioxygenase activity
GDR29_19390	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GDR29_19500	COG3023	N-Acetylmuramoyl-L-alanine amidase
GDR29_19510	COG4948	Mandelate Racemase Muconate Lactonizing
GDR29_19540	COG0531	amino acid
GDR29_19615	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GDR29_19630	COG1610	YqeY-like protein
GDR29_19745	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GDR29_19795	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GDR29_19855	COG2801	Transposase and inactivated derivatives
GDR29_20020	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
GDR29_20365	COG2353	YceI-like domain
GDR29_20410	COG3386	PFAM SMP-30 Gluconolaconase
GDR29_20520	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GDR29_20525	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GDR29_20540	COG2884	Cell division ATP-binding protein ftsE
GDR29_20590	COG2911	Protein conserved in bacteria
GDR29_20625	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GDR29_20640	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GDR29_20700	COG0702	epimerase
GDR29_20730	COG0583	DNA-binding transcription factor activity
GDR29_20755	COG0745	RESPONSE REGULATOR receiver
GDR29_20890	COG2072	flavoprotein involved in K transport
GDR29_21010	COG0697	spore germination
GDR29_21025	COG1132	(ABC) transporter
GDR29_21080	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GDR29_21080	COG0519	Catalyzes the synthesis of GMP from XMP
GDR29_21170	COG4948	Mandelate Racemase Muconate Lactonizing
GDR29_21330	COG1846	Transcriptional regulator
GDR29_21435	COG3549	Plasmid maintenance system killer
GDR29_21510	COG0004	ammonium transporteR
GDR29_21515	COG0347	Belongs to the P(II) protein family
GDR29_21585	COG0489	protein tyrosine kinase activity
GDR29_21710	COG1187	pseudouridine synthase activity
GDR29_21735	COG4948	Mandelate Racemase Muconate Lactonizing
GDR29_21750	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_21810	COG3162	membrane
GDR29_21830	COG0708	Exodeoxyribonuclease III
GDR29_21845	COG2091	lysine biosynthetic process via aminoadipic acid
GDR29_21890	COG2159	amidohydrolase
GDR29_21915	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
GDR29_22105	COG0302	gtp cyclohydrolase
GDR29_22275	COG0671	phosphoesterase, PA-phosphatase related
GDR29_22315	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GDR29_22345	COG0501	Belongs to the peptidase M48B family
GDR29_22595	COG0642	Histidine kinase
GDR29_22840	COG1649	PFAM Uncharacterised BCR, COG1649
GDR29_23255	COG0493	'glutamate synthase
GDR29_23550	COG1028	Short-chain dehydrogenase reductase Sdr
GDR29_23575	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
GDR29_23620	COG0284	orotidine-5'-phosphate decarboxylase activity
GDR29_23685	COG2755	lipolytic protein G-D-S-L family
GDR29_23705	COG1522	sequence-specific DNA binding
GDR29_23765	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
GDR29_23815	COG2951	lytic endotransglycosylase activity
GDR29_23885	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
GDR29_23910	COG2853	Lipoprotein
GDR29_23935	COG1127	ABC transporter
GDR29_24155	COG1181	Belongs to the D-alanine--D-alanine ligase family
GDR29_24245	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
GDR29_24260	COG1131	(ABC) transporter
GDR29_24265	COG1131	(ABC) transporter
GDR29_24520	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
GDR29_24520	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
GDR29_24525	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
GDR29_24580	COG3237	CsbD-like
GDR29_24780	COG2239	Acts as a magnesium transporter
GDR29_24815	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GDR29_24880	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
GDR29_24905	COG4221	oxidoreductase activity
GDR29_24925	COG2003	Belongs to the UPF0758 family
GDR29_24930	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
GDR29_24935	COG0756	dUTP diphosphatase activity
GDR29_24960	COG0463	Glycosyl transferase, family 2