locus-tag class description PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF02472 Biopolymer transport protein ExbD/TolR PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF01609 Transposase DDE domain PF05598 Transposase domain (DUF772) PF00462 Glutaredoxin PF01522 Polysaccharide deacetylase PF00155 Aminotransferase class I and II PF03193 RsgA GTPase PF00128 Alpha amylase, catalytic domain PF00356 Bacterial regulatory proteins, lacI family PF00106 short chain dehydrogenase PF03600 Citrate transporter PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07690 Major Facilitator Superfamily PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00375 Sodium:dicarboxylate symporter family PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF01515 Phosphate acetyl/butaryl transferase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF01527 Transposase PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF02581 Thiamine monophosphate synthase PF00301 Rubredoxin PF13369 Transglutaminase-like superfamily PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF01812 5-formyltetrahydrofolate cyclo-ligase family PF05164 Cell division protein ZapA PF03695 Uncharacterised protein family (UPF0149) PF05195 Aminopeptidase P, N-terminal domain PF00557 Metallopeptidase family M24 PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF13340 Putative transposase of IS4/5 family (DUF4096) PF00557 Metallopeptidase family M24 PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF01725 Ham1 family PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF08340 Domain of unknown function (DUF1732) PF03755 YicC-like family, N-terminal region PF00625 Guanylate kinase PF01192 RNA polymerase Rpb6 PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF01042 Endoribonuclease L-PSP PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF01156 Inosine-uridine preferring nucleoside hydrolase PF01197 Ribosomal protein L31 PF00285 Citrate synthase, C-terminal domain PF17092 Penicillin-binding protein OB-like domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF11104 Type IV pilus assembly protein PilM; PF05137 Fimbrial assembly protein (PilN) PF04350 Pilus assembly protein, PilO PF05819 NolX protein PF04351 Pilus assembly protein, PilP PF11741 AMIN domain PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF07660 Secretin and TonB N terminus short domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07584 Aerotolerance regulator N-terminal PF00092 von Willebrand factor type A domain PF00375 Sodium:dicarboxylate symporter family PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF01476 LysM domain PF03734 L,D-transpeptidase catalytic domain PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PF00501 AMP-binding enzyme PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00005 ABC transporter PF03459 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF04273 Putative phosphatase (DUF442) PF00753 Metallo-beta-lactamase superfamily PF03922 OmpW family PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF08443 RimK-like ATP-grasp domain PF18030 RimK PreATP-grasp domain PF00027 Cyclic nucleotide-binding domain PF00520 Ion transport protein PF00202 Aminotransferase class-III PF00595 PDZ domain PF01593 Flavin containing amine oxidoreductase PF00034 Cytochrome c PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF00155 Aminotransferase class I and II PF00127 Copper binding proteins, plastocyanin/azurin family PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF17874 MalT-like TPR region PF00202 Aminotransferase class-III PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF01208 Uroporphyrinogen decarboxylase (URO-D) PF01761 3-dehydroquinate synthase PF01202 Shikimate kinase PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PF01243 Pyridoxamine 5'-phosphate oxidase PF04012 PspA/IM30 family PF03738 Glutathionylspermidine synthase preATP-grasp PF00376 MerR family regulatory protein PF09278 MerR, DNA binding PF08338 Domain of unknown function (DUF1731) PF01370 NAD dependent epimerase/dehydratase family PF04820 Tryptophan halogenase PF12706 Beta-lactamase superfamily domain PF00324 Amino acid permease PF00196 Bacterial regulatory proteins, luxR family PF00561 alpha/beta hydrolase fold PF00324 Amino acid permease PF01654 Cytochrome bd terminal oxidase subunit I PF01654 Cytochrome bd terminal oxidase subunit I PF02322 Cytochrome bd terminal oxidase subunit II PF02322 Cytochrome bd terminal oxidase subunit II PF00756 Putative esterase PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF05524 PEP-utilising enzyme, N-terminal PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF00381 PTS HPr component phosphorylation site PF03668 P-loop ATPase protein family PF07475 HPr Serine kinase C-terminal domain PF02603 HPr Serine kinase N terminus PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF00309 Sigma-54 factor, Activator interacting domain (AID) PF04963 Sigma-54 factor, core binding domain PF04552 Sigma-54, DNA binding domain PF00005 ABC transporter PF03968 OstA-like protein PF00571 CBS domain PF01380 SIS domain PF01722 BolA-like protein PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00551 Formyl transferase PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF01594 AI-2E family transporter PF00308 Bacterial dnaA protein PF00483 Nucleotidyl transferase PF01636 Phosphotransferase enzyme family PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF06964 Alpha-L-arabinofuranosidase C-terminal domain PF01263 Aldose 1-epimerase PF01578 Cytochrome C assembly protein PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF03060 Nitronate monooxygenase PF00886 Ribosomal protein S16 PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF01746 tRNA (Guanine-1)-methyltransferase PF01245 Ribosomal protein L19 PF01554 MatE PF01479 S4 domain PF01541 GIY-YIG catalytic domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF13276 HTH-like domain PF13683 Integrase core domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF16485 Protealysin propeptide PF12557 Cob(I)alamin adenosyltransferase N terminal PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF02277 Phosphoribosyltransferase PF02654 Cobalamin-5-phosphate synthase PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF06276 Ferric iron reductase FhuF-like transporter PF04183 IucA / IucC family PF07690 Major Facilitator Superfamily PF06276 Ferric iron reductase FhuF-like transporter PF04183 IucA / IucC family PF07715 TonB-dependent Receptor Plug Domain PF07660 Secretin and TonB N terminus short domain PF00593 TonB dependent receptor PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF13344 Haloacid dehalogenase-like hydrolase PF00293 NUDIX domain PF00005 ABC transporter PF12848 ABC transporter PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF07859 alpha/beta hydrolase fold PF13472 GDSL-like Lipase/Acylhydrolase family PF12833 Helix-turn-helix domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00183 Hsp90 protein PF13276 HTH-like domain PF13276 HTH-like domain PF13276 HTH-like domain PF13276 HTH-like domain PF13276 HTH-like domain PF13276 HTH-like domain PF13276 HTH-like domain PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00120 Glutamine synthetase, catalytic domain PF00120 Glutamine synthetase, catalytic domain PF04204 Homoserine O-succinyltransferase PF01810 LysE type translocator PF07722 Peptidase C26 PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF01053 Cys/Met metabolism PLP-dependent enzyme PF00266 Aminotransferase class-V PF00355 Rieske [2Fe-2S] domain PF00266 Aminotransferase class-V PF01458 Uncharacterized protein family (UPF0051) PF00005 ABC transporter PF01458 Uncharacterized protein family (UPF0051) PF02082 Transcriptional regulator PF01965 DJ-1/PfpI family PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF01168 Alanine racemase, N-terminal domain PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF00437 Type II/IV secretion system protein PF13673 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF03352 Methyladenine glycosylase PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF13533 Biotin-lipoyl like PF02622 Uncharacterized ACR, COG1678 PF03652 Holliday junction resolvase PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF02566 OsmC-like protein PF02567 Phenazine biosynthesis-like protein PF02567 Phenazine biosynthesis-like protein PF02567 Phenazine biosynthesis-like protein PF00696 Amino acid kinase family PF01842 ACT domain PF08245 Mur ligase middle domain PF00348 Polyprenyl synthetase PF00436 Single-strand binding protein family PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00563 EAL domain PF01590 GAF domain PF00990 Diguanylate cyclase, GGDEF domain PF00360 Phytochrome region PF00698 Acyl transferase domain PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF16197 Ketoacyl-synthetase C-terminal extension PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08659 KR domain PF00550 Phosphopantetheine attachment site PF14765 Polyketide synthase dehydratase PF00005 ABC transporter PF04328 Selenoprotein, putative PF02554 Carbon starvation protein CstA PF13722 5TM C-terminal transporter carbon starvation CstA PF02678 Pirin PF05726 Pirin C-terminal cupin domain PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF02678 Pirin PF05726 Pirin C-terminal cupin domain PF04493 Endonuclease V PF00300 Histidine phosphatase superfamily (branch 1) PF01431 Peptidase family M13 PF05649 Peptidase family M13 PF13091 PLD-like domain PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF13426 PAS domain PF01584 CheW-like domain PF01584 CheW-like domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF01584 CheW-like domain PF09078 CheY binding PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PF08845 Toxin SymE, type I toxin-antitoxin system PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00749 tRNA synthetases class I (E and Q), catalytic domain PF01475 Ferric uptake regulator family PF00313 'Cold-shock' DNA-binding domain PF00313 'Cold-shock' DNA-binding domain PF00899 ThiF family PF01026 TatD related DNase PF03006 Haemolysin-III related PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF13417 Glutathione S-transferase, N-terminal domain PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF03358 NADPH-dependent FMN reductase PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF00875 DNA photolyase PF03441 FAD binding domain of DNA photolyase PF00691 OmpA family PF05736 OprF membrane domain PF00270 DEAD/DEAH box helicase PF09369 Domain of unknown function (DUF1998) PF00271 Helicase conserved C-terminal domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00654 Voltage gated chloride channel PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF02805 Metal binding domain of Ada PF06029 AlkA N-terminal domain PF00730 HhH-GPD superfamily base excision DNA repair protein PF12833 Helix-turn-helix domain PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF03880 DbpA RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF03737 Aldolase/RraA PF00144 Beta-lactamase PF00999 Sodium/hydrogen exchanger family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02321 Outer membrane efflux protein PF02321 Outer membrane efflux protein PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03527 RHS protein PF01121 Dephospho-CoA kinase PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF00482 Type II secretion system (T2SS), protein F PF07963 Prokaryotic N-terminal methylation motif PF00114 Pilin (bacterial filament) PF08019 Phosphoethanolamine transferase EptA/EptB PF00884 Sulfatase PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF02661 Fic/DOC family PF18543 Intracellular delivery domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08442 ATP-grasp domain PF00549 CoA-ligase PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PF02629 CoA binding domain PF00549 CoA-ligase PF00795 Carbon-nitrogen hydrolase PF02540 NAD synthase PF13525 Outer membrane lipoprotein PF00849 RNA pseudouridylate synthase PF02578 Multi-copper polyphenol oxidoreductase laccase PF00982 Glycosyltransferase family 20 PF00723 Glycosyl hydrolases family 15 PF00723 Glycosyl hydrolases family 15 PF00723 Glycosyl hydrolases family 15 PF02358 Trehalose-phosphatase PF04377 Arginine-tRNA-protein transferase, C terminus PF04376 Arginine-tRNA-protein transferase, N terminus PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF00378 Enoyl-CoA hydratase/isomerase PF00005 ABC transporter PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF00829 Ribosomal prokaryotic L21 protein PF01016 Ribosomal L27 protein PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF01649 Ribosomal protein S20 PF03023 Lipid II flippase MurJ PF06574 FAD synthetase PF01687 Riboflavin kinase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF06827 Zinc finger found in FPG and IleRS PF01252 Signal peptidase (SPase) II PF02401 LytB protein PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF06481 COX Aromatic Rich Motif PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF14220 Domain of unknown function (DUF4329) PF03527 RHS protein PF05593 RHS Repeat PF14220 Domain of unknown function (DUF4329) PF03527 RHS protein PF05593 RHS Repeat PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF18073 Rubredoxin metal binding domain PF05506 Domain of unknown function (DUF756) PF04185 Phosphoesterase family PF05506 Domain of unknown function (DUF756) PF04185 Phosphoesterase family PF05506 Domain of unknown function (DUF756) PF04185 Phosphoesterase family PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF01709 Transcriptional regulator PF02075 Crossover junction endodeoxyribonuclease RuvC PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02705 K+ potassium transporter PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF03061 Thioesterase superfamily PF01618 MotA/TolQ/ExbB proton channel family PF02472 Biopolymer transport protein ExbD/TolR PF07676 WD40-like Beta Propeller Repeat PF04052 TolB amino-terminal domain PF00691 OmpA family PF04055 Radical SAM superfamily PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF01810 LysE type translocator PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF05598 Transposase domain (DUF772) PF06508 Queuosine biosynthesis protein QueC PF00155 Aminotransferase class I and II PF00182 Chitinase class I PF01555 DNA methylase PF13438 Domain of unknown function (DUF4113) PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF11798 IMS family HHH motif PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00570 HRDC domain PF16124 RecQ zinc-binding PF09382 RQC domain PF00210 Ferritin-like domain PF00270 DEAD/DEAH box helicase PF11898 Domain of unknown function (DUF3418) PF04408 Helicase associated domain (HA2) PF00271 Helicase conserved C-terminal domain PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PF02685 Glucokinase PF02685 Glucokinase PF02685 Glucokinase PF02685 Glucokinase PF04055 Radical SAM superfamily PF13186 Iron-sulfur cluster-binding domain PF05402 Coenzyme PQQ synthesis protein D (PqqD) PF04962 KduI/IolB family PF03070 TENA/THI-4/PQQC family PF12706 Beta-lactamase superfamily domain PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF00535 Glycosyl transferase family 2 PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF14814 Bifunctional transglycosylase second domain PF13307 Helicase C-terminal domain PF04851 Type III restriction enzyme, res subunit PF00814 Glycoprotease family PF03747 ADP-ribosylglycohydrolase PF04962 KduI/IolB family PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PF02951 Prokaryotic glutathione synthetase, N-terminal domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF00072 Response regulator receiver domain PF13302 Acetyltransferase (GNAT) domain PF00356 Bacterial regulatory proteins, lacI family PF12034 Domain of unknown function (DUF3520) PF00092 von Willebrand factor type A domain PF12450 von Willebrand factor PF01112 Asparaginase PF03932 CutC family PF01301 Glycosyl hydrolases family 35 PF07971 Glycosyl hydrolase family 92 PF17678 Glycosyl hydrolase family 92 N-terminal domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF07691 PA14 domain PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF07691 PA14 domain PF00728 Glycosyl hydrolase family 20, catalytic domain PF02838 Glycosyl hydrolase family 20, domain 2 PF07691 PA14 domain PF00704 Glycosyl hydrolases family 18 PF01476 LysM domain PF04452 RNA methyltransferase PF00202 Aminotransferase class-III PF00293 NUDIX domain PF00459 Inositol monophosphatase family PF03819 MazG nucleotide pyrophosphohydrolase domain PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF00128 Alpha amylase, catalytic domain PF02806 Alpha amylase, C-terminal all-beta domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF01145 SPFH domain / Band 7 family PF16200 C-terminal region of band_7 PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF01597 Glycine cleavage H-protein PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF09317 Domain of unknown function (DUF1974) PF00561 alpha/beta hydrolase fold PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01430 Hsp33 protein PF00912 Transglycosylase PF00535 Glycosyl transferase family 2 PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF03006 Haemolysin-III related PF00009 Elongation factor Tu GTP binding domain PF16658 Class II release factor RF3, C-terminal domain PF00128 Alpha amylase, catalytic domain PF11896 Domain of unknown function (DUF3416) PF01476 LysM domain PF08525 Opacity-associated protein A N-terminal motif PF01551 Peptidase family M23 PF00561 alpha/beta hydrolase fold PF01053 Cys/Met metabolism PLP-dependent enzyme PF00696 Amino acid kinase family PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF03313 Serine dehydratase alpha chain PF03315 Serine dehydratase beta chain PF04264 YceI-like domain PF04264 YceI-like domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF17149 Periplasmic sensor domain found in signal transduction proteins PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF01527 Transposase PF01527 Transposase PF01527 Transposase PF07745 Glycosyl hydrolase family 53 PF01381 Helix-turn-helix PF06114 IrrE N-terminal-like domain PF09856 Predicted transcriptional regulator (DUF2083) PF00171 Aldehyde dehydrogenase family PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF01545 Cation efflux family PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF13180 PDZ domain PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF10502 Signal peptidase, peptidase S26 PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF07650 KH domain PF01926 50S ribosome-binding GTPase PF02565 Recombination protein O C terminal PF11967 Recombination protein O N terminal PF05958 tRNA (Uracil-5-)-methyltransferase PF01928 CYTH domain PF01323 DSBA-like thioredoxin domain PF01593 Flavin containing amine oxidoreductase PF04244 Deoxyribodipyrimidine photo-lyase-related protein PF00933 Glycosyl hydrolase family 3 N terminal domain PF00156 Phosphoribosyl transferase domain PF01048 Phosphorylase superfamily PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00313 'Cold-shock' DNA-binding domain PF01494 FAD binding domain PF01494 FAD binding domain PF00270 DEAD/DEAH box helicase PF08494 DEAD/H associated PF00271 Helicase conserved C-terminal domain PF04679 ATP dependent DNA ligase C terminal region PF01068 ATP dependent DNA ligase domain PF04675 DNA ligase N terminus PF04679 ATP dependent DNA ligase C terminal region PF01068 ATP dependent DNA ligase domain PF04675 DNA ligase N terminus PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF03797 Autotransporter beta-domain PF12951 Passenger-associated-transport-repeat PF00082 Subtilase family PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF01863 Protein of unknown function DUF45 PF07043 Protein of unknown function (DUF1328) PF01258 Prokaryotic dksA/traR C4-type zinc finger PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF03831 PhnA domain PF08274 PhnA Zinc-Ribbon PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF07690 Major Facilitator Superfamily PF09924 Uncharacterised conserved protein (DUF2156) PF03706 Lysylphosphatidylglycerol synthase TM region PF01042 Endoribonuclease L-PSP PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF04060 Putative Fe-S cluster PF09334 tRNA synthetases class I (M) PF01588 Putative tRNA binding domain PF01078 Magnesium chelatase, subunit ChlI PF13335 Magnesium chelatase, subunit ChlI C-terminal PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00324 Amino acid permease PF02574 Homocysteine S-methyltransferase PF02592 Putative vitamin uptake transporter PF04380 Membrane fusogenic activity PF00009 Elongation factor Tu GTP binding domain PF00009 Elongation factor Tu GTP binding domain PF00543 Nitrogen regulatory protein P-II PF03653 Uncharacterised protein family (UPF0093) PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF01351 Ribonuclease HII PF02684 Lipid-A-disaccharide synthetase PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PF00132 Bacterial transferase hexapeptide (six repeats) PF07977 FabA-like domain PF00132 Bacterial transferase hexapeptide (six repeats) PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PF01103 Surface antigen PF07244 Surface antigen variable number repeat PF17820 PDZ domain PF02163 Peptidase family M50 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF01255 Putative undecaprenyl diphosphate synthase PF01765 Ribosome recycling factor PF00696 Amino acid kinase family PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF00557 Metallopeptidase family M24 PF08335 GlnD PII-uridylyltransferase PF01966 HD domain PF01909 Nucleotidyltransferase domain PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PF03960 ArsC family PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01804 Penicillin amidase PF00210 Ferritin-like domain PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF02321 Outer membrane efflux protein PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF07690 Major Facilitator Superfamily PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF12806 Acetyl-CoA dehydrogenase C-terminal like PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF01668 SmpB protein PF17284 Spermidine synthase tetramerisation domain PF03364 Polyketide cyclase / dehydrase and lipid transport PF03658 RnfH family Ubiquitin PF04355 SmpA / OmlA family PF01475 Ferric uptake regulator family PF02463 RecF/RecN/SMC N terminal domain PF01628 HrcA protein C terminal domain PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PF01025 GrpE PF00012 Hsp70 protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF17810 Arginine decarboxylase helical bundle domain PF17944 Arginine decarboxylase C-terminal helical extension PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF08543 Phosphomethylpyrimidine kinase PF01817 Chorismate mutase type II PF02153 Prephenate dehydrogenase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01205 Uncharacterized protein family UPF0029 PF03641 Possible lysine decarboxylase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF16078 2-oxoglutarate dehydrogenase N-terminus PF00676 Dehydrogenase E1 component PF16870 2-oxoglutarate dehydrogenase C-terminal PF02779 Transketolase, pyrimidine binding domain PF08007 Cupin superfamily protein PF08328 Adenylosuccinate lyase C-terminal PF00206 Lyase PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF10415 Fumarase C C-terminus PF00206 Lyase PF00005 ABC transporter PF00392 Bacterial regulatory proteins, gntR family PF00255 Glutathione peroxidase PF00255 Glutathione peroxidase PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF04102 SlyX PF00356 Bacterial regulatory proteins, lacI family PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF00294 pfkB family carbohydrate kinase PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF10106 Uncharacterized protein conserved in bacteria (DUF2345) PF04717 Type VI secretion system, phage-baseplate injector PF13296 Putative type VI secretion system Rhs element Vgr PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF01209 ubiE/COQ5 methyltransferase family PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF17876 Cold shock domain PF08461 Ribonuclease R winged-helix domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF02463 RecF/RecN/SMC N terminal domain PF00313 'Cold-shock' DNA-binding domain PF00561 alpha/beta hydrolase fold PF03544 Gram-negative bacterial TonB protein C-terminal PF03544 Gram-negative bacterial TonB protein C-terminal PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF02525 Flavodoxin-like fold PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03377 TAL effector repeat PF03079 ARD/ARD' family PF00596 Class II Aldolase and Adducin N-terminal domain PF13520 Amino acid permease PF13520 Amino acid permease PF13520 Amino acid permease PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF03918 Cytochrome C biogenesis protein PF03918 Cytochrome C biogenesis protein PF08534 Redoxin PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PF01578 Cytochrome C assembly protein PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PF01578 Cytochrome C assembly protein PF03100 CcmE PF01578 Cytochrome C assembly protein PF03379 CcmB protein PF00005 ABC transporter PF00155 Aminotransferase class I and II PF00795 Carbon-nitrogen hydrolase PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF04079 Segregation and condensation complex subunit ScpB PF02616 Segregation and condensation protein ScpA PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF03795 YCII-related domain PF00356 Bacterial regulatory proteins, lacI family PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00795 Carbon-nitrogen hydrolase PF04371 Porphyromonas-type peptidyl-arginine deiminase PF00444 Ribosomal protein L36 PF02224 Cytidylate kinase PF00575 S1 RNA binding domain PF00216 Bacterial DNA-binding protein PF00291 Pyridoxal-phosphate dependent enzyme PF18073 Rubredoxin metal binding domain PF00953 Glycosyl transferase family 4 PF02719 Polysaccharide biosynthesis protein PF00483 Nucleotidyl transferase PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF10070 Uncharacterized protein conserved in bacteria (DUF2309) PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF03601 Conserved hypothetical protein 698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01070 FMN-dependent dehydrogenase PF01566 Natural resistance-associated macrophage protein PF02742 Iron dependent repressor, metal binding and dimerisation domain PF01325 Iron dependent repressor, N-terminal DNA binding domain PF14437 MafB19-like deaminase PF00929 Exonuclease PF00924 Mechanosensitive ion channel PF05552 Conserved TM helix PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PF03618 Kinase/pyrophosphorylase PF01066 CDP-alcohol phosphatidyltransferase PF00561 alpha/beta hydrolase fold PF01266 FAD dependent oxidoreductase PF00355 Rieske [2Fe-2S] domain PF17674 HHH domain PF00575 S1 RNA binding domain PF09371 Tex-like protein N-terminal domain PF16921 Tex protein YqgF-like domain PF13649 Methyltransferase domain PF00072 Response regulator receiver domain PF04551 GcpE protein PF01569 PAP2 superfamily PF07690 Major Facilitator Superfamily PF00892 EamA-like transporter family PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF01180 Dihydroorotate dehydrogenase PF00171 Aldehyde dehydrogenase family PF03073 TspO/MBR family PF00696 Amino acid kinase family PF01842 ACT domain PF13840 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF07519 Tannase and feruloyl esterase PF00291 Pyridoxal-phosphate dependent enzyme PF14821 Threonine synthase N terminus PF12697 Alpha/beta hydrolase family PF00027 Cyclic nucleotide-binding domain PF13545 Crp-like helix-turn-helix domain PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF01634 ATP phosphoribosyltransferase PF08029 HisG, C-terminal domain PF00815 Histidinol dehydrogenase PF00155 Aminotransferase class I and II PF00475 Imidazoleglycerol-phosphate dehydratase PF00117 Glutamine amidotransferase class-I PF00977 Histidine biosynthesis protein PF00977 Histidine biosynthesis protein PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF04349 Periplasmic glucan biosynthesis protein, MdoG PF02303 Helix-destabilising protein PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF00265 Thymidine kinase PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01066 CDP-alcohol phosphatidyltransferase PF01541 GIY-YIG catalytic domain PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF01451 Low molecular weight phosphotyrosine protein phosphatase PF02348 Cytidylyltransferase PF02606 Tetraacyldisaccharide-1-P 4'-kinase PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01618 MotA/TolQ/ExbB proton channel family PF03772 Competence protein PF00753 Metallo-beta-lactamase superfamily PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF03937 Flavinator of succinate dehydrogenase PF13085 2Fe-2S iron-sulfur cluster binding domain PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF01571 Aminomethyltransferase folate-binding domain PF00005 ABC transporter PF17912 MalK OB fold domain PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PF02685 Glucokinase PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF00920 Dehydratase family PF01081 KDPG and KHG aldolase PF04337 Protein of unknown function, DUF480 PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF00990 Diguanylate cyclase, GGDEF domain PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF00990 Diguanylate cyclase, GGDEF domain PF02253 Phospholipase A1 PF05681 Fumarate hydratase (Fumerase) PF05683 Fumarase C-terminus PF00005 ABC transporter PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF00970 Oxidoreductase FAD-binding domain PF00175 Oxidoreductase NAD-binding domain PF01432 Peptidase family M3 PF01432 Peptidase family M3 PF01432 Peptidase family M3 PF00082 Subtilase family PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF12802 MarR family PF04820 Tryptophan halogenase PF04820 Tryptophan halogenase PF00854 POT family PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF00474 Sodium:solute symporter family PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF00342 Phosphoglucose isomerase PF02261 Aspartate decarboxylase PF02569 Pantoate-beta-alanine ligase PF02548 Ketopantoate hydroxymethyltransferase PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF01743 Poly A polymerase head domain PF12626 Polymerase A arginine-rich C-terminus PF12627 Probable RNA and SrmB- binding site of polymerase A PF02649 Type I GTP cyclohydrolase folE2 PF01520 N-acetylmuramoyl-L-alanine amidase PF03797 Autotransporter beta-domain PF00082 Subtilase family PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00356 Bacterial regulatory proteins, lacI family PF00356 Bacterial regulatory proteins, lacI family PF00873 AcrB/AcrD/AcrF family PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08448 PAS fold PF13426 PAS domain PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF12951 Passenger-associated-transport-repeat PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF01842 ACT domain PF01817 Chorismate mutase type II PF00800 Prephenate dehydratase PF00266 Aminotransferase class-V PF00174 Oxidoreductase molybdopterin binding domain PF01794 Ferric reductase like transmembrane component PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF01553 Acyltransferase PF07969 Amidohydrolase family PF00221 Aromatic amino acid lyase PF01175 Urocanase Rossmann-like domain PF17392 Urocanase C-terminal domain PF17391 Urocanase N-terminal domain PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF01008 Initiation factor 2 subunit family PF00698 Acyl transferase domain PF08240 Alcohol dehydrogenase GroES-like domain PF16197 Ketoacyl-synthetase C-terminal extension PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08659 KR domain PF00550 Phosphopantetheine attachment site PF14765 Polyketide synthase dehydratase PF00152 tRNA synthetases class II (D, K and N) PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF04354 ZipA, C-terminal FtsZ-binding domain PF02463 RecF/RecN/SMC N terminal domain PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01084 Ribosomal protein S18 PF01250 Ribosomal protein S6 PF01521 Iron-sulphur cluster biosynthesis PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF00484 Carbonic anhydrase PF06052 3-hydroxyanthranilic acid dioxygenase PF00266 Aminotransferase class-V PF01494 FAD binding domain PF08411 Exonuclease C-terminal PF00929 Exonuclease PF00248 Aldo/keto reductase family PF00248 Aldo/keto reductase family PF01513 ATP-NAD kinase PF10672 S-adenosylmethionine-dependent methyltransferase PF02926 THUMP domain PF01170 Putative RNA methylase family UPF0020 PF00005 ABC transporter PF00581 Rhodanese-like domain PF00293 NUDIX domain PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PF10576 Iron-sulfur binding domain of endonuclease III PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF00484 Carbonic anhydrase PF12849 PBP superfamily domain PF12849 PBP superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF01895 PhoU domain PF00929 Exonuclease PF13495 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF13495 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF13721 SecD export protein N-terminal TM region PF02355 Protein export membrane protein PF02699 Preprotein translocase subunit PF01702 Queuine tRNA-ribosyltransferase PF02547 Queuosine biosynthesis protein PF00657 GDSL-like Lipase/Acylhydrolase PF00037 4Fe-4S binding domain PF01467 Cytidylyltransferase-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00183 Hsp90 protein PF00899 ThiF family PF00351 Biopterin-dependent aromatic amino acid hydroxylase PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF01011 PQQ enzyme repeat PF13360 PQQ-like domain PF13464 Domain of unknown function (DUF4115) PF04055 Radical SAM superfamily PF00334 Nucleoside diphosphate kinase PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF01037 Lrp/AsnC ligand binding domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00654 Voltage gated chloride channel PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF00004 ATPase family associated with various cellular activities (AAA) PF16193 AAA C-terminal domain PF12002 MgsA AAA+ ATPase C terminal PF03548 Outer membrane lipoprotein carrier protein LolA PF13491 4TM region of DNA translocase FtsK/SpoIIIE PF17854 FtsK alpha domain PF09397 Ftsk gamma domain PF01580 FtsK/SpoIIIE family PF07715 TonB-dependent Receptor Plug Domain PF07660 Secretin and TonB N terminus short domain PF00593 TonB dependent receptor PF07992 Pyridine nucleotide-disulphide oxidoreductase PF03588 Leucyl/phenylalanyl-tRNA protein transferase PF01176 Translation initiation factor 1A / IF-1 PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF02617 ATP-dependent Clp protease adaptor protein ClpS PF00293 NUDIX domain PF04356 Protein of unknown function (DUF489) PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF08447 PAS fold PF08448 PAS fold PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF13188 PAS domain PF13426 PAS domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF03963 Flagellar hook capping protein - N-terminal region PF07559 Flagellar basal body protein FlaE PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF02107 Flagellar L-ring protein PF02119 Flagellar P-ring protein PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PF10135 Rod binding protein PF07196 Flagellin hook IN motif PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00700 Bacterial flagellin C-terminal helical region PF00669 Bacterial flagellin N-terminal helical region PF07196 Flagellin hook IN motif PF07195 Flagellar hook-associated protein 2 C-terminus PF02465 Flagellar hook-associated protein 2 N-terminus PF02561 Flagellar protein FliS PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00309 Sigma-54 factor, Activator interacting domain (AID) PF04963 Sigma-54 factor, core binding domain PF04552 Sigma-54, DNA binding domain PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF06490 Flagellar regulatory protein FleQ PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF00534 Glycosyl transferases group 1 PF00535 Glycosyl transferase family 2 PF02049 Flagellar hook-basal body complex protein FliE PF01514 Secretory protein of YscJ/FliF family PF08345 Flagellar M-ring protein C-terminal PF01706 FliG C-terminal domain PF14841 FliG middle domain PF14842 FliG N-terminal domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF18269 T3SS EscN ATPase C-terminal domain PF07055 Enoyl reductase FAD binding domain PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PF12241 Trans-2-enoyl-CoA reductase catalytic region PF02154 Flagellar motor switch protein FliM PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF04347 Flagellar biosynthesis protein, FliO PF00813 FliP family PF01313 Bacterial export proteins, family 3 PF01311 Bacterial export proteins, family 1 PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF01312 FlhB HrpN YscU SpaS Family PF00771 FHIPEP family PF00448 SRP54-type protein, GTPase domain PF10609 NUBPL iron-transfer P-loop NTPase PF00072 Response regulator receiver domain PF04344 Chemotaxis phosphatase, CheZ PF00150 Cellulase (glycosyl hydrolase family 5) PF00150 Cellulase (glycosyl hydrolase family 5) PF00150 Cellulase (glycosyl hydrolase family 5) PF03527 RHS protein PF05593 RHS Repeat PF00873 AcrB/AcrD/AcrF family PF00034 Cytochrome c PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01654 Cytochrome bd terminal oxidase subunit I PF02129 X-Pro dipeptidyl-peptidase (S15 family) PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF00171 Aldehyde dehydrogenase family PF00696 Amino acid kinase family PF01472 PUA domain PF00206 Lyase PF01118 Semialdehyde dehydrogenase, NAD binding domain PF00696 Amino acid kinase family PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00764 Arginosuccinate synthase PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF02657 Fe-S metabolism associated domain PF01258 Prokaryotic dksA/traR C4-type zinc finger PF01809 Putative membrane protein insertion efficiency factor PF02810 SEC-C motif PF01979 Amidohydrolase family PF01551 Peptidase family M23 PF08460 Bacterial SH3 domain PF05985 Ethanolamine ammonia-lyase light chain (EutC) PF01095 Pectinesterase PF00295 Glycosyl hydrolases family 28 PF13419 Haloacid dehalogenase-like hydrolase PF01979 Amidohydrolase family PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF04055 Radical SAM superfamily PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF13188 PAS domain PF00588 SpoU rRNA Methylase family PF00459 Inositol monophosphatase family PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF00545 ribonuclease PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF00294 pfkB family carbohydrate kinase PF01263 Aldose 1-epimerase PF03880 DbpA RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00156 Phosphoribosyl transferase domain PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF14497 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF07152 YaeQ protein PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF07690 Major Facilitator Superfamily PF01435 Peptidase family M48 PF00749 tRNA synthetases class I (E and Q), catalytic domain PF00106 short chain dehydrogenase PF05233 PHB accumulation regulatory domain PF07879 PHB/PHA accumulation regulator DNA-binding domain PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF01520 N-acetylmuramoyl-L-alanine amidase PF11741 AMIN domain PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF01256 Carbohydrate kinase PF03853 YjeF-related protein N-terminus PF01126 Heme oxygenase PF08331 Domain of unknown function (DUF1730) PF02601 Exonuclease VII, large subunit PF13742 OB-fold nucleic acid binding domain PF03781 Sulfatase-modifying factor enzyme 1 PF01612 3'-5' exonuclease PF00570 HRDC domain PF01590 GAF domain PF08446 PAS fold PF13426 PAS domain PF00360 Phytochrome region PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF14850 DNA-binding domain of Proline dehydrogenase PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF14850 DNA-binding domain of Proline dehydrogenase PF18327 Proline utilization A proline dehydrogenase N-terminal domain PF02245 Methylpurine-DNA glycosylase (MPG) PF04386 Stringent starvation protein B PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF03594 Benzoate membrane transport protein PF03594 Benzoate membrane transport protein PF02167 Cytochrome C1 family PF00032 Cytochrome b(C-terminal)/b6/petD PF00033 Cytochrome b/b6/petB PF00355 Rieske [2Fe-2S] domain PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PF01464 Transglycosylase SLT domain PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF02562 PhoH-like protein PF02130 Uncharacterized protein family UPF0054 PF00571 CBS domain PF03471 Transporter associated domain PF00171 Aldehyde dehydrogenase family PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08402 TOBE domain PF02321 Outer membrane efflux protein PF07690 Major Facilitator Superfamily PF13533 Biotin-lipoyl like PF13533 Biotin-lipoyl like PF00120 Glutamine synthetase, catalytic domain PF01266 FAD dependent oxidoreductase PF07690 Major Facilitator Superfamily PF00083 Sugar (and other) transporter PF00384 Molybdopterin oxidoreductase PF02634 FdhD/NarQ family PF07690 Major Facilitator Superfamily PF00202 Aminotransferase class-III PF00005 ABC transporter PF04286 Protein of unknown function (DUF445) PF00072 Response regulator receiver domain PF05088 Bacterial NAD-glutamate dehydrogenase PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00873 AcrB/AcrD/AcrF family PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF01609 Transposase DDE domain PF13006 Insertion element 4 transposase N-terminal PF00356 Bacterial regulatory proteins, lacI family PF05524 PEP-utilising enzyme, N-terminal PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF00381 PTS HPr component phosphorylation site PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF00294 pfkB family carbohydrate kinase PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF04717 Type VI secretion system, phage-baseplate injector PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF01618 MotA/TolQ/ExbB proton channel family PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF13614 AAA domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF09078 CheY binding PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF07238 PilZ domain PF07317 Flagellar regulator YcgR PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF03975 CheD chemotactic sensory transduction PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF00561 alpha/beta hydrolase fold PF00330 Aconitase family (aconitate hydratase) PF06434 Aconitate hydratase 2 N-terminus PF11791 Aconitate B N-terminal domain PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF03462 PCRF domain PF00472 RF-1 domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF03475 3-alpha domain PF03473 MOSC domain PF00155 Aminotransferase class I and II PF07664 Ferrous iron transport protein B C terminus PF02421 Ferrous iron transport protein B PF07670 Nucleoside recognition PF00378 Enoyl-CoA hydratase/isomerase PF00682 HMGL-like PF00106 short chain dehydrogenase PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF04333 MlaA lipoprotein PF00083 Sugar (and other) transporter PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF16338 Domain of unknown function (DUF4968) PF17137 Domain of unknown function (DUF5110) PF01055 Glycosyl hydrolases family 31 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01081 KDPG and KHG aldolase PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF08450 SMP-30/Gluconolactonase/LRE-like region PF05035 2-keto-3-deoxy-galactonokinase PF11953 Domain of unknown function (DUF3470) PF00037 4Fe-4S binding domain PF00701 Dihydrodipicolinate synthetase family PF00578 AhpC/TSA family PF02562 PhoH-like protein PF13638 PIN domain PF05494 MlaC protein PF08543 Phosphomethylpyrimidine kinase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02678 Pirin PF17954 Quercetinase C-terminal cupin domain PF02470 MlaD protein PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF02599 Global regulator protein family PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF02631 RecX family PF00154 recA bacterial DNA recombination protein PF01726 LexA DNA binding domain PF00717 Peptidase S24-like PF03109 ABC1 family PF02464 Competence-damaged protein PF02405 Permease MlaE PF16360 GTP-binding GTPase Middle Region PF13167 GTP-binding GTPase N-terminal PF01926 50S ribosome-binding GTPase PF17209 Hfq protein PF00809 Pterin binding enzyme PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF01728 FtsJ-like methyltransferase PF01985 CRS1 / YhbY (CRM) domain PF01476 LysM domain PF01551 Peptidase family M23 PF09335 SNARE associated Golgi protein PF00005 ABC transporter PF01975 Survival protein SurE PF01713 Smr domain PF01142 tRNA pseudouridine synthase D (TruD) PF02542 YgbB family PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF04977 Septum formation initiator PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF00793 DAHP synthetase I family PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF02698 DUF218 domain PF01384 Phosphate transporter family PF00571 CBS domain PF03471 Transporter associated domain PF01595 Cyclin M transmembrane N-terminal domain PF00296 Luciferase-like monooxygenase PF07690 Major Facilitator Superfamily PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00005 ABC transporter PF13579 Glycosyl transferase 4-like domain PF00534 Glycosyl transferases group 1 PF08241 Methyltransferase domain PF00535 Glycosyl transferase family 2 PF01943 Polysaccharide biosynthesis protein PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PF05523 WxcM-like, C-terminal PF00034 Cytochrome c PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF00082 Subtilase family PF00082 Subtilase family PF01578 Cytochrome C assembly protein PF04995 Heme exporter protein D (CcmD) PF03100 CcmE PF08534 Redoxin PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF01526 Tn3 transposase DDE domain PF13700 Domain of unknown function (DUF4158) PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF03150 Di-haem cytochrome c peroxidase PF00034 Cytochrome c PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF06812 ImpA, N-terminal, type VI secretion system PF00069 Protein kinase domain PF06761 Intracellular multiplication and human macrophage-killing PF14331 ImcF-related N-terminal domain PF06744 Type VI secretion protein IcmF C-terminal PF06761 Intracellular multiplication and human macrophage-killing PF14331 ImcF-related N-terminal domain PF06744 Type VI secretion protein IcmF C-terminal PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF10431 C-terminal, D2-small domain, of ClpB protein PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF10431 C-terminal, D2-small domain, of ClpB protein PF05947 Type VI secretion system, TssF PF05947 Type VI secretion system, TssF PF04965 Gene 25-like lysozyme PF07024 ImpE protein PF05638 Type VI secretion system effector, Hcp PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PF01106 NifU-like domain PF01329 Pterin 4 alpha carbinolamine dehydratase PF02535 ZIP Zinc transporter PF02535 ZIP Zinc transporter PF11737 Protein of unknown function (DUF3300) PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF12111 Polyribonucleotide phosphorylase C terminal PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00581 Rhodanese-like domain PF17773 UPF0176 acylphosphatase like domain PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF17837 4'-phosphopantetheinyl transferase N-terminal domain PF01648 4'-phosphopantetheinyl transferase superfamily PF03861 ANTAR domain PF00072 Response regulator receiver domain PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF12804 MobA-like NTP transferase domain PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF18053 DNA gyrase B subunit insert domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF00005 ABC transporter PF04616 Glycosyl hydrolases family 43 PF07532 Bacterial Ig-like domain (group 4) PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00082 Subtilase family PF09286 Pro-kumamolisin, activation domain PF00082 Subtilase family PF09286 Pro-kumamolisin, activation domain PF13520 Amino acid permease PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF00171 Aldehyde dehydrogenase family PF00701 Dihydrodipicolinate synthetase family PF04324 BFD-like [2Fe-2S] binding domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF01266 FAD dependent oxidoreductase PF05544 Proline racemase PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF14815 NUDIX domain PF04362 Bacterial Fe(2+) trafficking PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF13426 PAS domain PF00072 Response regulator receiver domain PF08212 Lipocalin-like domain PF01011 PQQ enzyme repeat PF13360 PQQ-like domain PF13570 PQQ-like domain PF03808 Glycosyl transferase WecB/TagA/CpsF family PF14667 Polysaccharide biosynthesis C-terminal domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF02397 Bacterial sugar transferase PF13411 MerR HTH family regulatory protein PF00216 Bacterial DNA-binding protein PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF00453 Ribosomal protein L20 PF01632 Ribosomal protein L35 PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF03129 Anticodon binding domain PF02824 TGS domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor PF07963 Prokaryotic N-terminal methylation motif PF05567 Neisseria PilC beta-propeller domain PF12019 Type II transport protein GspH PF07963 Prokaryotic N-terminal methylation motif PF11892 Domain of unknown function (DUF3412) PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases PF03641 Possible lysine decarboxylase PF00593 TonB dependent receptor PF01914 MarC family integral membrane protein PF00462 Glutaredoxin PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF00731 AIR carboxylase PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF00312 Ribosomal protein S15 PF09157 Pseudouridine synthase II TruB, C-terminal PF16198 tRNA pseudouridylate synthase B C-terminal domain PF01509 TruB family pseudouridylate synthase (N terminal domain) PF02033 Ribosome-binding factor A PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF08364 Bacterial translation initiation factor IF-2 associated region PF04760 Translation initiation factor IF-2, N-terminal region PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain PF06165 Glycosyltransferase family 36 PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF02576 RimP N-terminal domain PF17384 RimP C-terminal SH3 domain PF00361 Proton-conducting membrane transporter PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus PF00361 Proton-conducting membrane transporter PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PF12838 4Fe-4S dicluster domain PF00146 NADH dehydrogenase PF00384 Molybdopterin oxidoreductase PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PF10531 SLBB domain PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PF03840 Preprotein translocase SecG subunit PF00121 Triosephosphate isomerase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF00290 Tryptophan synthase alpha chain PF02659 Putative manganese efflux pump PF00291 Pyridoxal-phosphate dependent enzyme PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF01416 tRNA pseudouridine synthase PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01264 Chorismate synthase PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF05175 Methyltransferase small domain PF02630 SCO1/SenC PF02666 Phosphatidylserine decarboxylase PF05872 Bacterial protein of unknown function (DUF853) PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF04055 Radical SAM superfamily PF18693 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01738 Dienelactone hydrolase family PF07690 Major Facilitator Superfamily PF00692 dUTPase PF10609 NUBPL iron-transfer P-loop NTPase PF05336 L-rhamnose mutarotase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01266 FAD dependent oxidoreductase PF04235 Protein of unknown function (DUF418) PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF00877 NlpC/P60 family PF00877 NlpC/P60 family PF00375 Sodium:dicarboxylate symporter family PF00245 Alkaline phosphatase PF01171 PP-loop family PF09179 TilS substrate binding domain PF11734 TilS substrate C-terminal domain PF02609 Exonuclease VII small subunit PF00348 Polyprenyl synthetase PF01523 Putative modulator of DNA gyrase PF04751 Protein of unknown function (DUF615) PF01523 Putative modulator of DNA gyrase PF13502 AsmA-like C-terminal region PF13116 Protein of unknown function PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF02545 Maf-like protein PF04402 Protein of unknown function (DUF541) PF02590 Predicted SPOUT methyltransferase PF01467 Cytidylyltransferase-like PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF00085 Thioredoxin PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF00472 RF-1 domain PF03797 Autotransporter beta-domain PF00657 GDSL-like Lipase/Acylhydrolase PF05690 Thiazole biosynthesis protein ThiG PF02390 Putative methyltransferase PF03600 Citrate transporter PF02080 TrkA-C domain PF01557 Fumarylacetoacetate (FAA) hydrolase family PF01741 Large-conductance mechanosensitive channel, MscL PF00849 RNA pseudouridylate synthase PF00135 Carboxylesterase family PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF11838 ERAP1-like C-terminal domain PF01433 Peptidase family M1 domain PF11838 ERAP1-like C-terminal domain PF01433 Peptidase family M1 domain PF00873 AcrB/AcrD/AcrF family PF00529 HlyD membrane-fusion protein of T1SS PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF01507 Phosphoadenosine phosphosulfate reductase family PF00667 FAD binding domain PF00258 Flavodoxin PF00175 Oxidoreductase NAD-binding domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF01507 Phosphoadenosine phosphosulfate reductase family PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF03109 ABC1 family PF00291 Pyridoxal-phosphate dependent enzyme PF01661 Macro domain PF00274 Fructose-bisphosphate aldolase class-I PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF13419 Haloacid dehalogenase-like hydrolase PF00162 Phosphoglycerate kinase PF00199 Catalase PF06628 Catalase-related immune-responsive PF18011 C-terminal domain found in long catalases PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region PF07676 WD40-like Beta Propeller Repeat PF00326 Prolyl oligopeptidase family PF03169 OPT oligopeptide transporter protein PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01726 LexA DNA binding domain PF00717 Peptidase S24-like PF01256 Carbohydrate kinase PF00300 Histidine phosphatase superfamily (branch 1) PF13456 Reverse transcriptase-like PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF11867 Domain of unknown function (DUF3387) PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF18766 SWI2/SNF2 ATPase PF01909 Nucleotidyltransferase domain PF08780 Nucleotidyltransferase substrate binding protein like PF02384 N-6 DNA Methylase PF08463 EcoEI R protein C-terminal PF00271 Helicase conserved C-terminal domain PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PF04851 Type III restriction enzyme, res subunit PF02384 N-6 DNA Methylase PF01420 Type I restriction modification DNA specificity domain PF06715 Gp5 C-terminal repeat (3 copies) PF04717 Type VI secretion system, phage-baseplate injector PF04717 Type VI secretion system, phage-baseplate injector PF03781 Sulfatase-modifying factor enzyme 1 PF04972 BON domain PF00691 OmpA family PF02222 ATP-grasp domain PF00730 HhH-GPD superfamily base excision DNA repair protein PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF07730 Histidine kinase PF03775 Septum formation inhibitor MinC, C-terminal domain PF05209 Septum formation inhibitor MinC, N-terminal domain PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03776 Septum formation topological specificity factor MinE PF08521 Two-component sensor kinase N-terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase PF08019 Phosphoethanolamine transferase EptA/EptB PF00884 Sulfatase PF02347 Glycine cleavage system P-protein PF01196 Ribosomal protein L17 PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF00411 Ribosomal protein S11 PF00416 Ribosomal protein S13/S18 PF00344 SecY translocase PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF00327 Ribosomal protein L30p/L7e PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF00347 Ribosomal protein L6 PF00410 Ribosomal protein S8 PF00253 Ribosomal protein S14p/S29e PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00238 Ribosomal protein L14p/L23e PF00366 Ribosomal protein S17 PF00831 Ribosomal L29 protein PF00252 Ribosomal protein L16p/L10e PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF00237 Ribosomal protein L22p/L17e PF00203 Ribosomal protein S19 PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF00276 Ribosomal protein L23 PF00573 Ribosomal protein L4/L1 family PF00297 Ribosomal protein L3 PF00338 Ribosomal protein S10p/S20e PF02558 Ketopantoate reductase PanE/ApbA PF08546 Ketopantoate reductase PanE/ApbA C terminal PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00177 Ribosomal protein S7p/S5e PF00164 Ribosomal protein S12/S23 PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF00466 Ribosomal protein L10 PF00687 Ribosomal protein L1p/L10e family PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF00467 KOW motif PF02357 Transcription termination factor nusG PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF01195 Peptidyl-tRNA hydrolase PF01386 Ribosomal L25p family PF14693 Ribosomal protein TL5, C-terminal domain PF01061 ABC-2 type transporter PF01061 ABC-2 type transporter PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF03550 Outer membrane lipoprotein LolB PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF03462 PCRF domain PF00472 RF-1 domain PF00994 Probable molybdopterin binding domain PF03976 Polyphosphate kinase 2 (PPK2) PF00005 ABC transporter PF00005 ABC transporter PF00708 Acylphosphatase PF08534 Redoxin PF03631 Virulence factor BrkB PF03358 NADPH-dependent FMN reductase PF02055 Glycosyl hydrolase family 30 TIM-barrel domain PF17189 Glycosyl hydrolase family 30 beta sandwich domain PF04073 Aminoacyl-tRNA editing domain PF07504 Fungalysin/Thermolysin Propeptide Motif PF03413 Peptidase propeptide and YPEB domain PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF04151 Bacterial pre-peptidase C-terminal domain PF01383 CpcD/allophycocyanin linker domain PF00175 Oxidoreductase NAD-binding domain PF00082 Subtilase family PF04151 Bacterial pre-peptidase C-terminal domain PF00082 Subtilase family PF04151 Bacterial pre-peptidase C-terminal domain PF01063 Amino-transferase class IV PF02233 NAD(P) transhydrogenase beta subunit PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF01545 Cation efflux family PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01612 3'-5' exonuclease PF00293 NUDIX domain PF00561 alpha/beta hydrolase fold PF02583 Metal-sensitive transcriptional repressor PF02583 Metal-sensitive transcriptional repressor PF05175 Methyltransferase small domain PF17827 PrmC N-terminal domain PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF13192 Thioredoxin domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF00923 Transaldolase/Fructose-6-phosphate aldolase PF01625 Peptide methionine sulfoxide reductase PF00462 Glutaredoxin PF01435 Peptidase family M48 PF13181 Tetratricopeptide repeat PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF11808 Phosphate regulon sensor protein PhoR PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF02541 Ppx/GppA phosphatase family PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01569 PAP2 superfamily PF00149 Calcineurin-like phosphoesterase PF04305 Protein of unknown function (DUF455) PF00156 Phosphoribosyl transferase domain PF01381 Helix-turn-helix PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF00300 Histidine phosphatase superfamily (branch 1) PF10459 Peptidase S46 PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00005 ABC transporter PF17850 CysA C-terminal regulatory domain PF12857 TOBE-like domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00155 Aminotransferase class I and II PF00849 RNA pseudouridylate synthase PF00691 OmpA family PF05736 OprF membrane domain PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00005 ABC transporter PF00749 tRNA synthetases class I (E and Q), catalytic domain PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PF01728 FtsJ-like methyltransferase PF18125 RlmM ferredoxin-like domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF08450 SMP-30/Gluconolactonase/LRE-like region PF08450 SMP-30/Gluconolactonase/LRE-like region PF00378 Enoyl-CoA hydratase/isomerase PF00171 Aldehyde dehydrogenase family PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF01494 FAD binding domain PF01494 FAD binding domain PF01923 Cobalamin adenosyltransferase PF00850 Histone deacetylase domain PF04453 LPS transport system D PF03968 OstA-like protein PF00639 PPIC-type PPIASE domain PF09312 SurA N-terminal domain PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF00398 Ribosomal RNA adenine dimethylase PF04379 ApaG domain PF00149 Calcineurin-like phosphoesterase PF00186 Dihydrofolate reductase PF00303 Thymidylate synthase PF01790 Prolipoprotein diacylglyceryl transferase PF01219 Prokaryotic diacylglycerol kinase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF13472 GDSL-like Lipase/Acylhydrolase family PF00005 ABC transporter PF02668 Taurine catabolism dioxygenase TauD, TfdA family PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00248 Aldo/keto reductase family PF07670 Nucleoside recognition PF07662 Na+ dependent nucleoside transporter C-terminus PF01773 Na+ dependent nucleoside transporter N-terminus PF00294 pfkB family carbohydrate kinase PF01207 Dihydrouridine synthase (Dus) PF13649 Methyltransferase domain PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF00311 Phosphoenolpyruvate carboxylase PF05221 S-adenosyl-L-homocysteine hydrolase PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF13649 Methyltransferase domain PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF00698 Acyl transferase domain PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF16197 Ketoacyl-synthetase C-terminal extension PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08659 KR domain PF00550 Phosphopantetheine attachment site PF14765 Polyketide synthase dehydratase PF02219 Methylenetetrahydrofolate reductase PF00293 NUDIX domain PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region PF00326 Prolyl oligopeptidase family PF02810 SEC-C motif PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF01476 LysM domain PF01551 Peptidase family M23 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF02491 SHS2 domain inserted in FTSA PF03799 Cell division protein FtsQ PF08478 POTRA domain, FtsQ-type PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF01098 Cell cycle protein PF00953 Glycosyl transferase family 4 PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF04999 Cell division protein FtsL PF01795 MraW methylase family PF02381 MraZ protein, putative antitoxin-like PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF02021 Uncharacterised protein family UPF0102 PF04307 LexA-binding, inner membrane-associated putative hydrolase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF13493 Domain of unknown function (DUF4118) PF13492 GAF domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02702 Osmosensitive K+ channel His kinase sensor domain PF02669 K+-transporting ATPase, c chain PF03814 Potassium-transporting ATPase A subunit PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF01029 NusB family PF00885 6,7-dimethyl-8-ribityllumazine synthase PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00677 Lumazine binding domain PF00490 Delta-aminolevulinic acid dehydratase PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF03477 ATP cone domain PF00464 Serine hydroxymethyltransferase PF00005 ABC transporter PF12848 ABC transporter PF00756 Putative esterase PF04828 Glutathione-dependent formaldehyde-activating enzyme PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF16527 Two-component sensor protein CpxA, periplasmic domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF04107 Glutamate-cysteine ligase family 2(GCS2) PF01926 50S ribosome-binding GTPase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00034 Cytochrome c PF02028 BCCT, betaine/carnitine/choline family transporter PF13291 ACT domain PF00291 Pyridoxal-phosphate dependent enzyme PF01527 Transposase PF01966 HD domain PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF00667 FAD binding domain PF00258 Flavodoxin PF00175 Oxidoreductase NAD-binding domain PF14883 Hypothetical glycosyl hydrolase family 13 PF01522 Polysaccharide deacetylase PF00535 Glycosyl transferase family 2 PF01979 Amidohydrolase family PF01380 SIS domain PF00356 Bacterial regulatory proteins, lacI family PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF16355 Domain of unknown function (DUF4982) PF18565 Glycoside hydrolase family 2 C-terminal domain 5 PF00703 Glycosyl hydrolases family 2 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PF02837 Glycosyl hydrolases family 2, sugar binding domain PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF08501 Shikimate dehydrogenase substrate binding domain PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF01590 GAF domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08446 PAS fold PF00360 Phytochrome region PF04972 BON domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF01467 Cytidylyltransferase-like PF00293 NUDIX domain PF11818 C-terminal domain of tail specific protease (DUF3340) PF00595 PDZ domain PF03572 Peptidase family S41 PF17804 Tail specific protease N-terminal domain PF07669 Eco57I restriction-modification methylase PF12950 TaqI-like C-terminal specificity domain PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF03099 Biotin/lipoate A/B protein ligase family PF04359 Protein of unknown function (DUF493) PF06733 DEAD_2 PF13307 Helicase C-terminal domain PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF03330 Lytic transglycolase PF05036 Sporulation related domain PF13406 Transglycosylase SLT domain PF01510 N-acetylmuramoyl-L-alanine amidase PF01476 LysM domain PF01471 Putative peptidoglycan binding domain PF04717 Type VI secretion system, phage-baseplate injector PF01098 Cell cycle protein PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF04085 rod shape-determining protein MreC PF00294 pfkB family carbohydrate kinase PF13673 Acetyltransferase (GNAT) domain PF01209 ubiE/COQ5 methyltransferase family PF00990 Diguanylate cyclase, GGDEF domain PF08448 PAS fold PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF13533 Biotin-lipoyl like PF00227 Proteasome subunit PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF01678 Diaminopimelate epimerase PF00326 Prolyl oligopeptidase family PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PF00155 Aminotransferase class I and II PF00326 Prolyl oligopeptidase family PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PF00199 Catalase PF06628 Catalase-related immune-responsive PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF07694 5TMR of 5TMR-LYT PF06580 Histidine kinase PF13632 Glycosyl transferase family group 2 PF01740 STAS domain PF00916 Sulfate permease family PF00553 Cellulose binding domain PF00150 Cellulase (glycosyl hydrolase family 5) PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02203 Tar ligand binding domain homologue PF01204 Trehalase PF01544 CorA-like Mg2+ transporter protein PF00324 Amino acid permease PF00553 Cellulose binding domain PF00041 Fibronectin type III domain PF01341 Glycosyl hydrolases family 6 PF03330 Lytic transglycolase PF00892 EamA-like transporter family PF07759 Protein of unknown function (DUF1615) PF01207 Dihydrouridine synthase (Dus) PF00106 short chain dehydrogenase PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF00781 Diacylglycerol kinase catalytic domain PF00583 Acetyltransferase (GNAT) family PF00834 Ribulose-phosphate 3 epimerase family PF00226 DnaJ domain PF05099 Tellurite resistance protein TerB PF01259 SAICAR synthetase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF07504 Fungalysin/Thermolysin Propeptide Motif PF01483 Proprotein convertase P-domain PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF07504 Fungalysin/Thermolysin Propeptide Motif PF01483 Proprotein convertase P-domain PF01447 Thermolysin metallopeptidase, catalytic domain PF02868 Thermolysin metallopeptidase, alpha-helical domain PF13244 Domain of unknown function (DUF4040) PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF00361 Proton-conducting membrane transporter PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF03334 Na+/H+ antiporter subunit PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF04209 homogentisate 1,2-dioxygenase PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF01047 MarR family PF00854 POT family PF03301 Tryptophan 2,3-dioxygenase PF00676 Dehydrogenase E1 component PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF06167 Glucose-regulated metallo-peptidase M90 PF01427 D-ala-D-ala dipeptidase PF01510 N-acetylmuramoyl-L-alanine amidase PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF08279 HTH domain PF13520 Amino acid permease PF05360 yiaA/B two helix domain PF03309 Type III pantothenate kinase PF07995 Glucose / Sorbosone dehydrogenase PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF02152 Dihydroneopterin aldolase PF00814 Glycoprotease family PF01165 Ribosomal protein S21 PF09424 Yqey-like protein PF03631 Virulence factor BrkB PF10410 DnaB-helicase binding domain of primase PF08278 DNA primase DnaG DnaB-binding PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF13593 SBF-like CPA transporter family (DUF4137) PF01040 UbiA prenyltransferase family PF00510 Cytochrome c oxidase subunit III PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF02223 Thymidylate kinase PF00210 Ferritin-like domain PF00293 NUDIX domain PF00380 Ribosomal protein S9/S16 PF00572 Ribosomal protein L13 PF03232 Ubiquinone biosynthesis protein COQ7 PF00893 Small Multidrug Resistance protein PF02675 S-adenosylmethionine decarboxylase PF00027 Cyclic nucleotide-binding domain PF00325 Bacterial regulatory proteins, crp family PF00218 Indole-3-glycerol phosphate synthase PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF00117 Glutamine amidotransferase class-I PF03971 Monomeric isocitrate dehydrogenase PF14489 QueF-like protein PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF00873 AcrB/AcrD/AcrF family PF00873 AcrB/AcrD/AcrF family PF07063 Domain of unknown function (DUF1338) PF00491 Arginase family PF00581 Rhodanese-like domain PF02556 Preprotein translocase subunit SecB PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF07690 Major Facilitator Superfamily PF00588 SpoU rRNA Methylase family PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF02661 Fic/DOC family PF13784 Fic/DOC family N-terminal PF01555 DNA methylase PF00561 alpha/beta hydrolase fold PF03692 Putative zinc- or iron-chelating domain PF00501 AMP-binding enzyme PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family PF11871 Domain of unknown function (DUF3391) PF01966 HD domain PF07690 Major Facilitator Superfamily PF05532 CsbD-like PF00132 Bacterial transferase hexapeptide (six repeats) PF03692 Putative zinc- or iron-chelating domain PF00920 Dehydratase family PF00579 tRNA synthetases class I (W and Y) PF01218 Coproporphyrinogen III oxidase PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01612 3'-5' exonuclease PF17831 Pyruvate dehydrogenase E1 component middle domain PF00456 Transketolase, thiamine diphosphate binding domain PF00753 Metallo-beta-lactamase superfamily PF04264 YceI-like domain PF00881 Nitroreductase family PF02592 Putative vitamin uptake transporter PF08335 GlnD PII-uridylyltransferase PF03710 Glutamate-ammonia ligase adenylyltransferase PF00793 DAHP synthetase I family PF00118 TCP-1/cpn60 chaperonin family PF00166 Chaperonin 10 Kd subunit PF07992 Pyridine nucleotide-disulphide oxidoreductase PF03458 UPF0126 domain PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF03167 Uracil DNA glycosylase superfamily PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF18075 FtsX extracellular domain PF00005 ABC transporter PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF12300 ATP-dependent RNA helicase RhlB PF00085 Thioredoxin PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF07498 Rho termination factor, N-terminal domain PF07497 Rho termination factor, RNA-binding domain PF01103 Surface antigen PF17243 POTRA domain TamA domain 1 PF04357 TamB, inner membrane protein subunit of TAM complex PF00892 EamA-like transporter family PF07977 FabA-like domain PF01553 Acyltransferase PF00550 Phosphopantetheine attachment site PF04820 Tryptophan halogenase PF01638 HxlR-like helix-turn-helix PF05368 NmrA-like family PF03812 2-keto-3-deoxygluconate permease PF08267 Cobalamin-independent synthase, N-terminal domain PF01717 Cobalamin-independent synthase, Catalytic domain PF03358 NADPH-dependent FMN reductase PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF02677 Epoxyqueuosine reductase QueH PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00199 Catalase PF00551 Formyl transferase PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF02146 Sir2 family PF07690 Major Facilitator Superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01026 TatD related DNase PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00266 Aminotransferase class-V PF09349 OHCU decarboxylase PF01014 Uricase PF13454 FAD-NAD(P)-binding PF00326 Prolyl oligopeptidase family PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF00364 Biotin-requiring enzyme PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF18140 Propionyl-coenzyme A carboxylase BT domain PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF01039 Carboxyl transferase domain PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF03969 AFG1-like ATPase PF13181 Tetratricopeptide repeat PF06903 VirK protein PF01594 AI-2E family transporter PF05746 DALR anticodon binding domain PF02092 Glycyl-tRNA synthetase beta subunit PF02091 Glycyl-tRNA synthetase alpha subunit PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF00902 Sec-independent protein translocase protein (TatC) PF02416 mttA/Hcf106 family PF02416 mttA/Hcf106 family PF00762 Ferrochelatase PF12697 Alpha/beta hydrolase family PF04381 Putative exonuclease, RdgC PF01171 PP-loop family PF07477 Glycosyl hydrolase family 67 C-terminus PF07488 Glycosyl hydrolase family 67 middle domain PF03648 Glycosyl hydrolase family 67 N-terminus PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PF04616 Glycosyl hydrolases family 43 PF01232 Mannitol dehydrogenase Rossmann domain PF08125 Mannitol dehydrogenase C-terminal domain PF02614 Glucuronate isomerase PF00553 Cellulose binding domain PF03422 Carbohydrate binding module (family 6) PF00331 Glycosyl hydrolase family 10 PF00553 Cellulose binding domain PF03422 Carbohydrate binding module (family 6) PF00331 Glycosyl hydrolase family 10 PF01040 UbiA prenyltransferase family PF04616 Glycosyl hydrolases family 43 PF12792 CSS motif domain associated with EAL PF00563 EAL domain PF00487 Fatty acid desaturase PF00970 Oxidoreductase FAD-binding domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF00175 Oxidoreductase NAD-binding domain PF00440 Bacterial regulatory proteins, tetR family PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF01047 MarR family PF02566 OsmC-like protein PF00155 Aminotransferase class I and II PF01381 Helix-turn-helix PF05015 RelE-like toxin of type II toxin-antitoxin system HigB PF13538 UvrD-like helicase C-terminal domain PF12705 PD-(D/E)XK nuclease superfamily PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF17946 RecC C-terminal domain PF00080 Copper/zinc superoxide dismutase (SODC) PF00080 Copper/zinc superoxide dismutase (SODC) PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00909 Ammonium Transporter Family PF00543 Nitrogen regulatory protein P-II PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF02673 Bacitracin resistance protein BacA PF03061 Thioesterase superfamily PF13091 PLD-like domain PF01883 Iron-sulfur cluster assembly protein PF10609 NUBPL iron-transfer P-loop NTPase PF01381 Helix-turn-helix PF13657 HipA N-terminal domain PF07804 HipA-like C-terminal domain PF10017 Histidine-specific methyltransferase, SAM-dependent PF12867 DinB superfamily PF03781 Sulfatase-modifying factor enzyme 1 PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF00571 CBS domain PF00535 Glycosyl transferase family 2 PF00005 ABC transporter PF01734 Patatin-like phospholipase PF00248 Aldo/keto reductase family PF16884 N-terminal domain of oxidoreductase PF00107 Zinc-binding dehydrogenase PF00248 Aldo/keto reductase family PF00849 RNA pseudouridylate synthase PF00270 DEAD/DEAH box helicase PF04408 Helicase associated domain (HA2) PF00271 Helicase conserved C-terminal domain PF08482 ATP-dependent helicase C-terminal PF07308 Protein of unknown function (DUF1456) PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF01557 Fumarylacetoacetate (FAA) hydrolase family PF00248 Aldo/keto reductase family PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PF04616 Glycosyl hydrolases family 43 PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF05166 YcgL domain PF04341 Protein of unknown function, DUF485 PF00474 Sodium:solute symporter family PF03372 Endonuclease/Exonuclease/phosphatase family PF04226 Transglycosylase associated protein PF01648 4'-phosphopantetheinyl transferase superfamily PF09423 PhoD-like phosphatase PF16655 PhoD-like phosphatase, N-terminal domain PF09423 PhoD-like phosphatase PF16655 PhoD-like phosphatase, N-terminal domain PF02527 rRNA small subunit methyltransferase G PF00830 Ribosomal L28 family PF00471 Ribosomal protein L33 PF04909 Amidohydrolase PF04909 Amidohydrolase PF04303 PrpF protein PF03737 Aldolase/RraA PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF02646 RmuC family PF00255 Glutathione peroxidase PF04055 Radical SAM superfamily PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PF13180 PDZ domain PF03572 Peptidase family S41 PF01551 Peptidase family M23 PF04389 Peptidase family M28 PF02463 RecF/RecN/SMC N terminal domain PF01227 GTP cyclohydrolase I PF00083 Sugar (and other) transporter PF00999 Sodium/hydrogen exchanger family PF02254 TrkA-N domain PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF05532 CsbD-like PF13556 PucR C-terminal helix-turn-helix domain PF07905 Purine catabolism regulatory protein-like family PF02595 Glycerate kinase family PF07690 Major Facilitator Superfamily PF10672 S-adenosylmethionine-dependent methyltransferase PF17785 PUA-like domain PF03741 Integral membrane protein TerC family PF01694 Rhomboid family PF03009 Glycerophosphoryl diester phosphodiesterase family PF01569 PAP2 superfamily PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF01522 Polysaccharide deacetylase PF02096 60Kd inner membrane protein PF14849 YidC periplasmic domain PF00825 Ribonuclease P PF00583 Acetyltransferase (GNAT) family PF13380 CoA binding domain PF13607 Succinyl-CoA ligase like flavodoxin domain PF00468 Ribosomal protein L34 PF03477 ATP cone domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF00268 Ribonucleotide reductase, small chain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00775 Dioxygenase PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF12146 Serine aminopeptidase, S33 PF02627 Carboxymuconolactone decarboxylase family PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF00106 short chain dehydrogenase PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF04002 RadC-like JAB domain PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF00692 dUTPase PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00535 Glycosyl transferase family 2 PF01370 NAD dependent epimerase/dehydratase family PF17762 HTH domain found in ParB protein PF02195 ParB-like nuclease domain PF13614 AAA domain PF00156 Phosphoribosyl transferase domain PF03372 Endonuclease/Exonuclease/phosphatase family PF07690 Major Facilitator Superfamily PF03702 Anhydro-N-acetylmuramic acid kinase PF00579 tRNA synthetases class I (W and Y) PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF01627 Hpt domain PF00072 Response regulator receiver domain PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PF01521 Iron-sulphur cluster biosynthesis PF01435 Peptidase family M48 PF00293 NUDIX domain PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain PF09297 NADH pyrophosphatase zinc ribbon domain PF17113 Regulatory signalling modulator protein AmpE PF03186 CobD/Cbib protein PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF12805 FUSC-like inner membrane protein yccS PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF13304 AAA domain, putative AbiEii toxin, Type IV TA system PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF12146 Serine aminopeptidase, S33 PF12147 Putative methyltransferase PF12146 Serine aminopeptidase, S33 PF12147 Putative methyltransferase PF00782 Dual specificity phosphatase, catalytic domain PF02954 Bacterial regulatory protein, Fis family PF01381 Helix-turn-helix PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00364 Biotin-requiring enzyme PF01220 Dehydroquinase class II PF11412 Disulphide bond corrector protein DsbC PF02683 Cytochrome C biogenesis protein transmembrane region PF03091 CutA1 divalent ion tolerance protein PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF01554 MatE PF01343 Peptidase family S49 PF01300 Telomere recombination PF01131 DNA topoisomerase PF01751 Toprim domain PF13368 Topoisomerase C-terminal repeat PF07963 Prokaryotic N-terminal methylation motif PF00114 Pilin (bacterial filament) PF04361 Protein of unknown function (DUF494) PF02481 DNA recombination-mediator protein A PF17782 DprA winged helix domain PF01476 LysM domain PF01327 Polypeptide deformylase PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF03150 Di-haem cytochrome c peroxidase PF00535 Glycosyl transferase family 2 PF00925 GTP cyclohydrolase II PF03279 Bacterial lipid A biosynthesis acyltransferase PF02580 D-Tyr-tRNA(Tyr) deacylase PF04546 Sigma-70, non-essential region PF03979 Sigma-70 factor, region 1.1 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF13460 NAD(P)H-binding PF00005 ABC transporter PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF08240 Alcohol dehydrogenase GroES-like domain PF13823 Alcohol dehydrogenase GroES-associated PF00107 Zinc-binding dehydrogenase PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF01339 CheB methylesterase PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF08448 PAS fold PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF00128 Alpha amylase, catalytic domain PF13520 Amino acid permease PF01431 Peptidase family M13 PF05649 Peptidase family M13 PF03358 NADPH-dependent FMN reductase PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PF02446 4-alpha-glucanotransferase PF03167 Uracil DNA glycosylase superfamily PF02469 Fasciclin domain PF00999 Sodium/hydrogen exchanger family PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF11941 Domain of unknown function (DUF3459) PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF08448 PAS fold PF13188 PAS domain PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF01618 MotA/TolQ/ExbB proton channel family PF01641 SelR domain PF00128 Alpha amylase, catalytic domain PF02806 Alpha amylase, C-terminal all-beta domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF01037 Lrp/AsnC ligand binding domain PF01266 FAD dependent oxidoreductase PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF07995 Glucose / Sorbosone dehydrogenase PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF05175 Methyltransferase small domain PF08468 Methyltransferase small domain N-terminal PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF13419 Haloacid dehalogenase-like hydrolase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF18415 Histidine kinase receptor ArcB trans-membrane domain PF01627 Hpt domain PF00989 PAS fold PF00072 Response regulator receiver domain PF04461 Protein of unknown function (DUF520) PF00892 EamA-like transporter family PF00005 ABC transporter PF09383 NIL domain PF00528 Binding-protein-dependent transport system inner membrane component PF03180 NLPA lipoprotein PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF02638 Glycosyl hydrolase-like 10 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00119 ATP synthase A chain PF00137 ATP synthase subunit C PF00430 ATP synthase B/B' CF(0) PF00213 ATP synthase delta (OSCP) subunit PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00231 ATP synthase PF05661 Protein of unknown function (DUF808) PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF01817 Chorismate mutase type II PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF12804 MobA-like NTP transferase domain PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF03109 ABC1 family PF01380 SIS domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF05275 Copper resistance protein B precursor (CopB) PF00394 Multicopper oxidase PF07731 Multicopper oxidase PF07732 Multicopper oxidase PF01432 Peptidase family M3 PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF07977 FabA-like domain PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF13419 Haloacid dehalogenase-like hydrolase PF13185 GAF domain PF01242 6-pyruvoyl tetrahydropterin synthase PF13417 Glutathione S-transferase, N-terminal domain PF00571 CBS domain PF00291 Pyridoxal-phosphate dependent enzyme PF01053 Cys/Met metabolism PLP-dependent enzyme PF01370 NAD dependent epimerase/dehydratase family PF00005 ABC transporter PF00924 Mechanosensitive ion channel PF12795 Mechanosensitive ion channel porin domain PF12794 Mechanosensitive ion channel inner membrane domain 1 PF01012 Electron transfer flavoprotein domain PF00766 Electron transfer flavoprotein FAD-binding domain PF01012 Electron transfer flavoprotein domain PF16363 GDP-mannose 4,6 dehydratase PF00483 Nucleotidyl transferase PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF04321 RmlD substrate binding domain PF01050 Mannose-6-phosphate isomerase PF00483 Nucleotidyl transferase PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF01144 Coenzyme A transferase PF01144 Coenzyme A transferase PF14307 Glycosyltransferase WbsX PF05045 Rhamnan synthesis protein F PF03886 ABC-type transport auxiliary lipoprotein component PF02470 MlaD protein PF00005 ABC transporter PF02405 Permease MlaE PF00816 H-NS histone family PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF01066 CDP-alcohol phosphatidyltransferase PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain PF01464 Transglycosylase SLT domain PF00544 Pectate lyase PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF03739 Lipopolysaccharide export system permease LptF/LptG PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF10411 Disulfide bond isomerase protein N-terminus PF13098 Thioredoxin-like domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PF13018 Extended Signal Peptide of Type V secretion system PF03895 YadA-like membrane anchor domain PF05658 Head domain of trimeric autotransporter adhesin PF05662 Coiled stalk of trimeric autotransporter adhesin PF01483 Proprotein convertase P-domain PF00082 Subtilase family PF00437 Type II/IV secretion system protein PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PF00482 Type II secretion system (T2SS), protein F PF08334 Type II secretion system (T2SS), protein G PF12019 Type II transport protein GspH PF07963 Prokaryotic N-terminal methylation motif PF03934 Type II secretion system (T2SS), protein K PF01464 Transglycosylase SLT domain PF05137 Fimbrial assembly protein (PilN) PF10741 Type II secretion system (T2SS), protein M subtype b PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF01618 MotA/TolQ/ExbB proton channel family PF09827 CRISPR associated protein Cas2 PF01867 CRISPR associated protein Cas1 PF09704 CRISPR-associated protein (Cas_Cas5) PF00263 Bacterial type II and III secretion system protein PF03958 Bacterial type II/III secretion system short domain PF02545 Maf-like protein PF02620 Large ribosomal RNA subunit accumulation protein YceD PF01783 Ribosomal L32p protein family PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF00698 Acyl transferase domain PF00550 Phosphopantetheine attachment site PF01311 Bacterial export proteins, family 1 PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF02618 YceG-like family PF09115 DNA polymerase III, delta subunit, C terminal PF02954 Bacterial regulatory protein, Fis family PF06506 Propionate catabolism activator PF00158 Sigma-54 interaction domain PF00285 Citrate synthase, C-terminal domain PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF04303 PrpF protein PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF18269 T3SS EscN ATPase C-terminal domain PF08534 Redoxin PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF01145 SPFH domain / Band 7 family PF12221 Bacterial membrane protein N terminal PF01145 SPFH domain / Band 7 family PF00709 Adenylosuccinate synthetase PF11838 ERAP1-like C-terminal domain PF01433 Peptidase family M1 domain PF03279 Bacterial lipid A biosynthesis acyltransferase PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PF02321 Outer membrane efflux protein PF00990 Diguanylate cyclase, GGDEF domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF01514 Secretory protein of YscJ/FliF family PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF08241 Methyltransferase domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF00291 Pyridoxal-phosphate dependent enzyme PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF13667 ThiC-associated domain PF01964 Radical SAM ThiC family PF18500 CadC C-terminal domain 1 PF00486 Transcriptional regulatory protein, C terminal PF12833 Helix-turn-helix domain PF07715 TonB-dependent Receptor Plug Domain PF00593 TonB dependent receptor PF00719 Inorganic pyrophosphatase PF03030 Inorganic H+ pyrophosphatase PF00365 Phosphofructokinase PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01062 Bestrophin, RFP-TM, chloride channel PF00043 Glutathione S-transferase, C-terminal domain PF02798 Glutathione S-transferase, N-terminal domain PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF02472 Biopolymer transport protein ExbD/TolR PF01312 FlhB HrpN YscU SpaS Family PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF00679 Elongation factor G C-terminus PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF01474 Class-II DAHP synthetase family PF02600 Disulfide bond formation protein DsbB PF00771 FHIPEP family PF00849 RNA pseudouridylate synthase PF03009 Glycerophosphoryl diester phosphodiesterase family PF00180 Isocitrate/isopropylmalate dehydrogenase PF18324 Hypothetical protein TT1725 PF00813 FliP family PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF01313 Bacterial export proteins, family 3 PF00574 Clp protease PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF00216 Bacterial DNA-binding protein PF05257 CHAP domain PF01476 LysM domain PF16123 Hydroxyacylglutathione hydrolase C-terminus PF00753 Metallo-beta-lactamase superfamily PF00075 RNase H PF00929 Exonuclease PF13356 Arm DNA-binding domain PF00589 Phage integrase family PF01075 Glycosyltransferase family 9 (heptosyltransferase) PF00753 Metallo-beta-lactamase superfamily PF12706 Beta-lactamase superfamily domain PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF01967 MoaC family PF02597 ThiS family PF02391 MoaE protein PF12169 DNA polymerase III subunits gamma and tau domain III PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PF12170 DNA polymerase III tau subunit V interacting with alpha PF02575 YbaB/EbfC DNA-binding family PF02132 RecR protein PF13662 Toprim domain PF01230 HIT domain PF11992 Domain of unknown function (DUF3488) PF13559 Domain of unknown function (DUF4129) PF01841 Transglutaminase-like superfamily PF03960 ArsC family PF01327 Polypeptide deformylase