locus-tag class description BRN52_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BRN52_00010 PF02767 DNA polymerase III beta subunit, central domain BRN52_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BRN52_00020 PF02463 RecF/RecN/SMC N terminal domain BRN52_00025 PF01751 Toprim domain BRN52_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_00025 PF18053 DNA gyrase B subunit insert domain BRN52_00025 PF00986 DNA gyrase B subunit, carboxyl terminus BRN52_00025 PF00204 DNA gyrase B BRN52_00035 PF01435 Peptidase family M48 BRN52_00045 PF03544 Gram-negative bacterial TonB protein C-terminal BRN52_00050 PF01618 MotA/TolQ/ExbB proton channel family BRN52_00055 PF02472 Biopolymer transport protein ExbD/TolR BRN52_00060 PF02472 Biopolymer transport protein ExbD/TolR BRN52_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BRN52_00075 PF13396 Phospholipase_D-nuclease N-terminal BRN52_00075 PF13091 PLD-like domain BRN52_00085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BRN52_00090 PF00155 Aminotransferase class I and II BRN52_00095 PF00593 TonB dependent receptor BRN52_00095 PF07715 TonB-dependent Receptor Plug Domain BRN52_00110 PF05598 Transposase domain (DUF772) BRN52_00110 PF01609 Transposase DDE domain BRN52_00115 PF01070 FMN-dependent dehydrogenase BRN52_00120 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BRN52_00135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BRN52_00135 PF12241 Trans-2-enoyl-CoA reductase catalytic region BRN52_00135 PF07055 Enoyl reductase FAD binding domain BRN52_00145 PF00294 pfkB family carbohydrate kinase BRN52_00230 PF13344 Haloacid dehalogenase-like hydrolase BRN52_00230 PF00293 NUDIX domain BRN52_00250 PF13936 Helix-turn-helix domain BRN52_00250 PF00665 Integrase core domain BRN52_00275 PF01609 Transposase DDE domain BRN52_00275 PF05598 Transposase domain (DUF772) BRN52_00285 PF08338 Domain of unknown function (DUF1731) BRN52_00285 PF01370 NAD dependent epimerase/dehydratase family BRN52_00295 PF00512 His Kinase A (phospho-acceptor) domain BRN52_00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_00295 PF08521 Two-component sensor kinase N-terminal BRN52_00305 PF00595 PDZ domain BRN52_00335 PF05819 NolX protein BRN52_00390 PF01313 Bacterial export proteins, family 3 BRN52_00395 PF00813 FliP family BRN52_00410 PF00771 FHIPEP family BRN52_00415 PF01312 FlhB HrpN YscU SpaS Family BRN52_00430 PF01514 Secretory protein of YscJ/FliF family BRN52_00445 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRN52_00445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRN52_00445 PF18269 T3SS EscN ATPase C-terminal domain BRN52_00455 PF01311 Bacterial export proteins, family 1 BRN52_00470 PF01464 Transglycosylase SLT domain BRN52_00475 PF05598 Transposase domain (DUF772) BRN52_00500 PF00924 Mechanosensitive ion channel BRN52_00500 PF12795 Mechanosensitive ion channel porin domain BRN52_00500 PF12794 Mechanosensitive ion channel inner membrane domain 1 BRN52_00515 PF03109 ABC1 family BRN52_00525 PF05661 Protein of unknown function (DUF808) BRN52_00535 PF00072 Response regulator receiver domain BRN52_00535 PF00990 Diguanylate cyclase, GGDEF domain BRN52_00540 PF08323 Starch synthase catalytic domain BRN52_00540 PF00534 Glycosyl transferases group 1 BRN52_00545 PF02806 Alpha amylase, C-terminal all-beta domain BRN52_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRN52_00545 PF00128 Alpha amylase, catalytic domain BRN52_00550 PF11941 Domain of unknown function (DUF3459) BRN52_00550 PF00128 Alpha amylase, catalytic domain BRN52_00550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRN52_00555 PF02446 4-alpha-glucanotransferase BRN52_00560 PF00128 Alpha amylase, catalytic domain BRN52_00570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRN52_00570 PF00128 Alpha amylase, catalytic domain BRN52_00575 PF13460 NAD(P)H-binding BRN52_00585 PF03150 Di-haem cytochrome c peroxidase BRN52_00655 PF06903 VirK protein BRN52_00670 PF00271 Helicase conserved C-terminal domain BRN52_00670 PF00270 DEAD/DEAH box helicase BRN52_00680 PF01609 Transposase DDE domain BRN52_00680 PF05598 Transposase domain (DUF772) BRN52_00720 PF05598 Transposase domain (DUF772) BRN52_00730 PF00005 ABC transporter BRN52_00755 PF13533 Biotin-lipoyl like BRN52_00765 PF00005 ABC transporter BRN52_00790 PF08845 Toxin SymE, type I toxin-antitoxin system BRN52_00810 PF03006 Haemolysin-III related BRN52_00815 PF00271 Helicase conserved C-terminal domain BRN52_00815 PF00270 DEAD/DEAH box helicase BRN52_00815 PF09369 Domain of unknown function (DUF1998) BRN52_00875 PF00310 Glutamine amidotransferases class-II BRN52_00875 PF04898 Glutamate synthase central domain BRN52_00875 PF01493 GXGXG motif BRN52_00875 PF01645 Conserved region in glutamate synthase BRN52_00880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BRN52_00880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_00925 PF00356 Bacterial regulatory proteins, lacI family BRN52_00955 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRN52_00955 PF02806 Alpha amylase, C-terminal all-beta domain BRN52_00955 PF00128 Alpha amylase, catalytic domain BRN52_00960 PF00128 Alpha amylase, catalytic domain BRN52_00960 PF16657 Maltogenic Amylase, C-terminal domain BRN52_00965 PF11896 Domain of unknown function (DUF3416) BRN52_00965 PF00128 Alpha amylase, catalytic domain BRN52_01015 PF13332 Hemagglutinin repeat BRN52_01015 PF05860 haemagglutination activity domain BRN52_01015 PF04829 Pre-toxin domain with VENN motif BRN52_01030 PF01078 Magnesium chelatase, subunit ChlI BRN52_01030 PF13335 Magnesium chelatase, subunit ChlI C-terminal BRN52_01035 PF04380 Membrane fusogenic activity BRN52_01040 PF00543 Nitrogen regulatory protein P-II BRN52_01080 PF17284 Spermidine synthase tetramerisation domain BRN52_01085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRN52_01085 PF17810 Arginine decarboxylase helical bundle domain BRN52_01085 PF17944 Arginine decarboxylase C-terminal helical extension BRN52_01095 PF04717 Type VI secretion system, phage-baseplate injector BRN52_01095 PF16671 Actin cross-linking domain BRN52_01120 PF13932 GidA associated domain BRN52_01120 PF01134 Glucose inhibited division protein A BRN52_01135 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_01155 PF13649 Methyltransferase domain BRN52_01165 PF12697 Alpha/beta hydrolase family BRN52_01185 PF04349 Periplasmic glucan biosynthesis protein, MdoG BRN52_01195 PF00265 Thymidine kinase BRN52_01200 PF00580 UvrD/REP helicase N-terminal domain BRN52_01200 PF13361 UvrD-like helicase C-terminal domain BRN52_01215 PF04337 Protein of unknown function, DUF480 BRN52_01220 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BRN52_01225 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BRN52_01230 PF04820 Tryptophan halogenase BRN52_01245 PF00356 Bacterial regulatory proteins, lacI family BRN52_01260 PF01553 Acyltransferase BRN52_01265 PF16197 Ketoacyl-synthetase C-terminal extension BRN52_01265 PF00698 Acyl transferase domain BRN52_01265 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_01265 PF00109 Beta-ketoacyl synthase, N-terminal domain BRN52_01265 PF02801 Beta-ketoacyl synthase, C-terminal domain BRN52_01265 PF08659 KR domain BRN52_01265 PF14765 Polyketide synthase dehydratase BRN52_01265 PF00550 Phosphopantetheine attachment site BRN52_01285 PF00872 Transposase, Mutator family BRN52_01335 PF01734 Patatin-like phospholipase BRN52_01345 PF00005 ABC transporter BRN52_01360 PF00571 CBS domain BRN52_01360 PF00005 ABC transporter BRN52_01365 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_01375 PF12867 DinB superfamily BRN52_01375 PF03781 Sulfatase-modifying factor enzyme 1 BRN52_01380 PF10017 Histidine-specific methyltransferase, SAM-dependent BRN52_01385 PF13657 HipA N-terminal domain BRN52_01385 PF07804 HipA-like C-terminal domain BRN52_01390 PF01381 Helix-turn-helix BRN52_01410 PF01883 Iron-sulfur cluster assembly protein BRN52_01410 PF10609 NUBPL iron-transfer P-loop NTPase BRN52_01425 PF13091 PLD-like domain BRN52_01430 PF03061 Thioesterase superfamily BRN52_01470 PF02673 Bacitracin resistance protein BacA BRN52_01475 PF00120 Glutamine synthetase, catalytic domain BRN52_01475 PF03951 Glutamine synthetase, beta-Grasp domain BRN52_01480 PF00543 Nitrogen regulatory protein P-II BRN52_01485 PF00909 Ammonium Transporter Family BRN52_01490 PF00512 His Kinase A (phospho-acceptor) domain BRN52_01490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_01490 PF00989 PAS fold BRN52_01495 PF00158 Sigma-54 interaction domain BRN52_01495 PF00072 Response regulator receiver domain BRN52_01495 PF02954 Bacterial regulatory protein, Fis family BRN52_01500 PF00080 Copper/zinc superoxide dismutase (SODC) BRN52_01505 PF00080 Copper/zinc superoxide dismutase (SODC) BRN52_01555 PF17946 RecC C-terminal domain BRN52_01560 PF13361 UvrD-like helicase C-terminal domain BRN52_01560 PF12705 PD-(D/E)XK nuclease superfamily BRN52_01560 PF00580 UvrD/REP helicase N-terminal domain BRN52_01565 PF13538 UvrD-like helicase C-terminal domain BRN52_01570 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BRN52_01575 PF01381 Helix-turn-helix BRN52_01660 PF02566 OsmC-like protein BRN52_01665 PF01047 MarR family BRN52_01700 PF00440 Bacterial regulatory proteins, tetR family BRN52_01705 PF00970 Oxidoreductase FAD-binding domain BRN52_01705 PF00111 2Fe-2S iron-sulfur cluster binding domain BRN52_01705 PF00175 Oxidoreductase NAD-binding domain BRN52_01710 PF00487 Fatty acid desaturase BRN52_01715 PF12792 CSS motif domain associated with EAL BRN52_01715 PF00563 EAL domain BRN52_01750 PF04616 Glycosyl hydrolases family 43 BRN52_01780 PF00553 Cellulose binding domain BRN52_01780 PF00331 Glycosyl hydrolase family 10 BRN52_01780 PF03422 Carbohydrate binding module (family 6) BRN52_01785 PF02614 Glucuronate isomerase BRN52_01805 PF01232 Mannitol dehydrogenase Rossmann domain BRN52_01805 PF08125 Mannitol dehydrogenase C-terminal domain BRN52_01810 PF14310 Fibronectin type III-like domain BRN52_01810 PF07691 PA14 domain BRN52_01810 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRN52_01810 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_01815 PF04616 Glycosyl hydrolases family 43 BRN52_01815 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRN52_01820 PF13378 Enolase C-terminal domain-like BRN52_01820 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRN52_01830 PF07488 Glycosyl hydrolase family 67 middle domain BRN52_01830 PF07477 Glycosyl hydrolase family 67 C-terminus BRN52_01830 PF03648 Glycosyl hydrolase family 67 N-terminus BRN52_01835 PF00356 Bacterial regulatory proteins, lacI family BRN52_01850 PF01171 PP-loop family BRN52_01855 PF04381 Putative exonuclease, RdgC BRN52_01880 PF12697 Alpha/beta hydrolase family BRN52_01885 PF00762 Ferrochelatase BRN52_01895 PF02416 mttA/Hcf106 family BRN52_01900 PF02416 mttA/Hcf106 family BRN52_01905 PF00902 Sec-independent protein translocase protein (TatC) BRN52_01915 PF00117 Glutamine amidotransferase class-I BRN52_01915 PF00958 GMP synthase C terminal domain BRN52_01940 PF00437 Type II/IV secretion system protein BRN52_01940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRN52_01945 PF02091 Glycyl-tRNA synthetase alpha subunit BRN52_01950 PF05746 DALR anticodon binding domain BRN52_01950 PF02092 Glycyl-tRNA synthetase beta subunit BRN52_01955 PF13181 Tetratricopeptide repeat BRN52_01960 PF07715 TonB-dependent Receptor Plug Domain BRN52_01960 PF00593 TonB dependent receptor BRN52_01975 PF03969 AFG1-like ATPase BRN52_01995 PF07683 Cobalamin synthesis protein cobW C-terminal domain BRN52_01995 PF02492 CobW/HypB/UreG, nucleotide-binding domain BRN52_02050 PF02770 Acyl-CoA dehydrogenase, middle domain BRN52_02050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_02050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_02055 PF01039 Carboxyl transferase domain BRN52_02060 PF00364 Biotin-requiring enzyme BRN52_02060 PF00289 Biotin carboxylase, N-terminal domain BRN52_02060 PF02785 Biotin carboxylase C-terminal domain BRN52_02060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRN52_02065 PF00326 Prolyl oligopeptidase family BRN52_02130 PF09349 OHCU decarboxylase BRN52_02130 PF01014 Uricase BRN52_02145 PF00266 Aminotransferase class-V BRN52_02190 PF01026 TatD related DNase BRN52_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_02210 PF03466 LysR substrate binding domain BRN52_02215 PF07690 Major Facilitator Superfamily BRN52_02225 PF02146 Sir2 family BRN52_02230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRN52_02235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRN52_02235 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRN52_02255 PF00551 Formyl transferase BRN52_02260 PF00486 Transcriptional regulatory protein, C terminal BRN52_02260 PF00072 Response regulator receiver domain BRN52_02280 PF02677 Epoxyqueuosine reductase QueH BRN52_02285 PF03466 LysR substrate binding domain BRN52_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_02290 PF03358 NADPH-dependent FMN reductase BRN52_02300 PF08267 Cobalamin-independent synthase, N-terminal domain BRN52_02300 PF01717 Cobalamin-independent synthase, Catalytic domain BRN52_02305 PF03812 2-keto-3-deoxygluconate permease BRN52_02320 PF05368 NmrA-like family BRN52_02325 PF01638 HxlR-like helix-turn-helix BRN52_02390 PF04820 Tryptophan halogenase BRN52_02395 PF00550 Phosphopantetheine attachment site BRN52_02405 PF01553 Acyltransferase BRN52_02410 PF07977 FabA-like domain BRN52_02445 PF04357 TamB, inner membrane protein subunit of TAM complex BRN52_02450 PF01103 Surface antigen BRN52_02450 PF17243 POTRA domain TamA domain 1 BRN52_02465 PF07497 Rho termination factor, RNA-binding domain BRN52_02465 PF07498 Rho termination factor, N-terminal domain BRN52_02465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRN52_02470 PF00085 Thioredoxin BRN52_02475 PF00270 DEAD/DEAH box helicase BRN52_02475 PF00271 Helicase conserved C-terminal domain BRN52_02475 PF12300 ATP-dependent RNA helicase RhlB BRN52_02480 PF00005 ABC transporter BRN52_02485 PF18075 FtsX extracellular domain BRN52_02490 PF00072 Response regulator receiver domain BRN52_02495 PF03167 Uracil DNA glycosylase superfamily BRN52_02500 PF04545 Sigma-70, region 4 BRN52_02500 PF04542 Sigma-70 region 2 BRN52_02510 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_02530 PF00166 Chaperonin 10 Kd subunit BRN52_02535 PF00118 TCP-1/cpn60 chaperonin family BRN52_02545 PF00593 TonB dependent receptor BRN52_02545 PF07715 TonB-dependent Receptor Plug Domain BRN52_02560 PF00793 DAHP synthetase I family BRN52_02600 PF08450 SMP-30/Gluconolactonase/LRE-like region BRN52_02610 PF03710 Glutamate-ammonia ligase adenylyltransferase BRN52_02610 PF08335 GlnD PII-uridylyltransferase BRN52_02615 PF02592 Putative vitamin uptake transporter BRN52_02640 PF00881 Nitroreductase family BRN52_02645 PF04264 YceI-like domain BRN52_02690 PF03377 TAL effector repeat BRN52_02705 PF00456 Transketolase, thiamine diphosphate binding domain BRN52_02705 PF17831 Pyruvate dehydrogenase E1 component middle domain BRN52_02710 PF01966 HD domain BRN52_02710 PF13286 Phosphohydrolase-associated domain BRN52_02745 PF01612 3'-5' exonuclease BRN52_02745 PF00476 DNA polymerase family A BRN52_02745 PF01367 5'-3' exonuclease, C-terminal SAM fold BRN52_02745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRN52_02760 PF01218 Coproporphyrinogen III oxidase BRN52_02770 PF05598 Transposase domain (DUF772) BRN52_02770 PF01609 Transposase DDE domain BRN52_02790 PF00589 Phage integrase family BRN52_02790 PF13495 Phage integrase, N-terminal SAM-like domain BRN52_02795 PF00920 Dehydratase family BRN52_02800 PF03692 Putative zinc- or iron-chelating domain BRN52_02805 PF00132 Bacterial transferase hexapeptide (six repeats) BRN52_02810 PF07690 Major Facilitator Superfamily BRN52_02815 PF01966 HD domain BRN52_02815 PF11871 Domain of unknown function (DUF3391) BRN52_02820 PF05598 Transposase domain (DUF772) BRN52_02830 PF05598 Transposase domain (DUF772) BRN52_02845 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BRN52_02850 PF00501 AMP-binding enzyme BRN52_02855 PF03692 Putative zinc- or iron-chelating domain BRN52_02860 PF00561 alpha/beta hydrolase fold BRN52_02870 PF01555 DNA methylase BRN52_02875 PF02661 Fic/DOC family BRN52_02875 PF13784 Fic/DOC family N-terminal BRN52_02880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRN52_02880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRN52_02895 PF00588 SpoU rRNA Methylase family BRN52_02900 PF07690 Major Facilitator Superfamily BRN52_02915 PF00072 Response regulator receiver domain BRN52_02915 PF00158 Sigma-54 interaction domain BRN52_02915 PF02954 Bacterial regulatory protein, Fis family BRN52_02920 PF00512 His Kinase A (phospho-acceptor) domain BRN52_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_02925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRN52_02925 PF00205 Thiamine pyrophosphate enzyme, central domain BRN52_02925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRN52_02935 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BRN52_02935 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BRN52_02940 PF02556 Preprotein translocase subunit SecB BRN52_02945 PF00581 Rhodanese-like domain BRN52_02975 PF07063 Domain of unknown function (DUF1338) BRN52_02985 PF00873 AcrB/AcrD/AcrF family BRN52_02990 PF00873 AcrB/AcrD/AcrF family BRN52_02995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_03000 PF01546 Peptidase family M20/M25/M40 BRN52_03000 PF07687 Peptidase dimerisation domain BRN52_03010 PF14489 QueF-like protein BRN52_03010 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BRN52_03025 PF00872 Transposase, Mutator family BRN52_03065 PF00005 ABC transporter BRN52_03080 PF07715 TonB-dependent Receptor Plug Domain BRN52_03080 PF00593 TonB dependent receptor BRN52_03125 PF08275 DNA primase catalytic core, N-terminal domain BRN52_03125 PF08278 DNA primase DnaG DnaB-binding BRN52_03125 PF01807 CHC2 zinc finger BRN52_03125 PF10410 DnaB-helicase binding domain of primase BRN52_03130 PF03631 Virulence factor BrkB BRN52_03150 PF09424 Yqey-like protein BRN52_03155 PF01165 Ribosomal protein S21 BRN52_03160 PF00814 Glycoprotease family BRN52_03165 PF02152 Dihydroneopterin aldolase BRN52_03170 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_03170 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRN52_03170 PF14310 Fibronectin type III-like domain BRN52_03225 PF07995 Glucose / Sorbosone dehydrogenase BRN52_03235 PF05360 yiaA/B two helix domain BRN52_03260 PF13520 Amino acid permease BRN52_03290 PF13378 Enolase C-terminal domain-like BRN52_03290 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRN52_03300 PF01510 N-acetylmuramoyl-L-alanine amidase BRN52_03305 PF05598 Transposase domain (DUF772) BRN52_03305 PF01609 Transposase DDE domain BRN52_03310 PF01427 D-ala-D-ala dipeptidase BRN52_03355 PF01609 Transposase DDE domain BRN52_03355 PF05598 Transposase domain (DUF772) BRN52_03400 PF00108 Thiolase, N-terminal domain BRN52_03400 PF02803 Thiolase, C-terminal domain BRN52_03435 PF00676 Dehydrogenase E1 component BRN52_03445 PF03301 Tryptophan 2,3-dioxygenase BRN52_03450 PF00854 POT family BRN52_03460 PF01047 MarR family BRN52_03465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRN52_03470 PF04209 homogentisate 1,2-dioxygenase BRN52_03480 PF03334 Na+/H+ antiporter subunit BRN52_03485 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BRN52_03495 PF00361 Proton-conducting membrane transporter BRN52_03500 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRN52_03505 PF13244 Domain of unknown function (DUF4040) BRN52_03505 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRN52_03505 PF00361 Proton-conducting membrane transporter BRN52_03505 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BRN52_03535 PF01259 SAICAR synthetase BRN52_03540 PF05099 Tellurite resistance protein TerB BRN52_03540 PF00226 DnaJ domain BRN52_03545 PF00834 Ribulose-phosphate 3 epimerase family BRN52_03550 PF00583 Acetyltransferase (GNAT) family BRN52_03555 PF00781 Diacylglycerol kinase catalytic domain BRN52_03560 PF04715 Anthranilate synthase component I, N terminal region BRN52_03560 PF00425 chorismate binding enzyme BRN52_03580 PF00106 short chain dehydrogenase BRN52_03620 PF07759 Protein of unknown function (DUF1615) BRN52_03640 PF00892 EamA-like transporter family BRN52_03645 PF03330 Lytic transglycolase BRN52_03650 PF00553 Cellulose binding domain BRN52_03650 PF00041 Fibronectin type III domain BRN52_03650 PF01341 Glycosyl hydrolases family 6 BRN52_03660 PF00324 Amino acid permease BRN52_03670 PF01544 CorA-like Mg2+ transporter protein BRN52_03690 PF01204 Trehalase BRN52_03730 PF00990 Diguanylate cyclase, GGDEF domain BRN52_03730 PF03707 Bacterial signalling protein N terminal repeat BRN52_03730 PF00563 EAL domain BRN52_03740 PF00672 HAMP domain BRN52_03740 PF02203 Tar ligand binding domain homologue BRN52_03740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_03750 PF00553 Cellulose binding domain BRN52_03750 PF00150 Cellulase (glycosyl hydrolase family 5) BRN52_03755 PF00916 Sulfate permease family BRN52_03755 PF01740 STAS domain BRN52_03795 PF13632 Glycosyl transferase family group 2 BRN52_03805 PF07694 5TMR of 5TMR-LYT BRN52_03805 PF06580 Histidine kinase BRN52_03810 PF04397 LytTr DNA-binding domain BRN52_03810 PF00072 Response regulator receiver domain BRN52_03815 PF03900 Porphobilinogen deaminase, C-terminal domain BRN52_03815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BRN52_03840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRN52_03840 PF00326 Prolyl oligopeptidase family BRN52_03855 PF00155 Aminotransferase class I and II BRN52_03860 PF00326 Prolyl oligopeptidase family BRN52_03860 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BRN52_03875 PF01678 Diaminopimelate epimerase BRN52_03885 PF00589 Phage integrase family BRN52_03885 PF02899 Phage integrase, N-terminal SAM-like domain BRN52_03895 PF00227 Proteasome subunit BRN52_03900 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_03900 PF07724 AAA domain (Cdc48 subfamily) BRN52_03900 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_03915 PF11838 ERAP1-like C-terminal domain BRN52_03915 PF01433 Peptidase family M1 domain BRN52_03920 PF00990 Diguanylate cyclase, GGDEF domain BRN52_03920 PF17152 Periplasmic sensor domain BRN52_03925 PF01209 ubiE/COQ5 methyltransferase family BRN52_03935 PF13533 Biotin-lipoyl like BRN52_03945 PF13673 Acetyltransferase (GNAT) domain BRN52_03970 PF01609 Transposase DDE domain BRN52_03970 PF05598 Transposase domain (DUF772) BRN52_03975 PF00294 pfkB family carbohydrate kinase BRN52_03985 PF04085 rod shape-determining protein MreC BRN52_03995 PF00905 Penicillin binding protein transpeptidase domain BRN52_03995 PF03717 Penicillin-binding Protein dimerisation domain BRN52_04000 PF01098 Cell cycle protein BRN52_04055 PF05598 Transposase domain (DUF772) BRN52_04070 PF13406 Transglycosylase SLT domain BRN52_04075 PF05036 Sporulation related domain BRN52_04075 PF03330 Lytic transglycolase BRN52_04085 PF00768 D-alanyl-D-alanine carboxypeptidase BRN52_04085 PF07943 Penicillin-binding protein 5, C-terminal domain BRN52_04095 PF04359 Protein of unknown function (DUF493) BRN52_04100 PF03099 Biotin/lipoate A/B protein ligase family BRN52_04105 PF04055 Radical SAM superfamily BRN52_04105 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BRN52_04110 PF17804 Tail specific protease N-terminal domain BRN52_04110 PF00595 PDZ domain BRN52_04110 PF03572 Peptidase family S41 BRN52_04110 PF11818 C-terminal domain of tail specific protease (DUF3340) BRN52_04120 PF00293 NUDIX domain BRN52_04120 PF01467 Cytidylyltransferase-like BRN52_04155 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BRN52_04155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRN52_04160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRN52_04160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRN52_04165 PF04972 BON domain BRN52_04170 PF01590 GAF domain BRN52_04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_04170 PF00512 His Kinase A (phospho-acceptor) domain BRN52_04170 PF00360 Phytochrome region BRN52_04170 PF08446 PAS fold BRN52_04175 PF00072 Response regulator receiver domain BRN52_04180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_04180 PF00512 His Kinase A (phospho-acceptor) domain BRN52_04185 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRN52_04240 PF02837 Glycosyl hydrolases family 2, sugar binding domain BRN52_04240 PF16355 Domain of unknown function (DUF4982) BRN52_04240 PF00703 Glycosyl hydrolases family 2 BRN52_04240 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BRN52_04240 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BRN52_04260 PF07690 Major Facilitator Superfamily BRN52_04265 PF00356 Bacterial regulatory proteins, lacI family BRN52_04270 PF01380 SIS domain BRN52_04275 PF01979 Amidohydrolase family BRN52_04285 PF00535 Glycosyl transferase family 2 BRN52_04290 PF01522 Polysaccharide deacetylase BRN52_04290 PF14883 Hypothetical glycosyl hydrolase family 13 BRN52_04350 PF12627 Probable RNA and SrmB- binding site of polymerase A BRN52_04350 PF01966 HD domain BRN52_04350 PF01743 Poly A polymerase head domain BRN52_04380 PF05598 Transposase domain (DUF772) BRN52_04390 PF01527 Transposase BRN52_04410 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_04410 PF13291 ACT domain BRN52_04415 PF01609 Transposase DDE domain BRN52_04415 PF05598 Transposase domain (DUF772) BRN52_04445 PF00034 Cytochrome c BRN52_04450 PF01926 50S ribosome-binding GTPase BRN52_04460 PF04107 Glutamate-cysteine ligase family 2(GCS2) BRN52_04465 PF00512 His Kinase A (phospho-acceptor) domain BRN52_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_04465 PF00672 HAMP domain BRN52_04505 PF16527 Two-component sensor protein CpxA, periplasmic domain BRN52_04505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_04505 PF00512 His Kinase A (phospho-acceptor) domain BRN52_04505 PF00672 HAMP domain BRN52_04510 PF00486 Transcriptional regulatory protein, C terminal BRN52_04510 PF00072 Response regulator receiver domain BRN52_04525 PF02583 Metal-sensitive transcriptional repressor BRN52_04530 PF00107 Zinc-binding dehydrogenase BRN52_04530 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_04540 PF00756 Putative esterase BRN52_04545 PF05598 Transposase domain (DUF772) BRN52_04560 PF00005 ABC transporter BRN52_04560 PF12848 ABC transporter BRN52_04580 PF00464 Serine hydroxymethyltransferase BRN52_04590 PF03477 ATP cone domain BRN52_04600 PF01872 RibD C-terminal domain BRN52_04600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BRN52_04610 PF00677 Lumazine binding domain BRN52_04615 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BRN52_04615 PF00925 GTP cyclohydrolase II BRN52_04620 PF00885 6,7-dimethyl-8-ribityllumazine synthase BRN52_04625 PF01029 NusB family BRN52_04630 PF02769 AIR synthase related protein, C-terminal domain BRN52_04630 PF00586 AIR synthase related protein, N-terminal domain BRN52_04655 PF03814 Potassium-transporting ATPase A subunit BRN52_04665 PF02669 K+-transporting ATPase, c chain BRN52_04670 PF13493 Domain of unknown function (DUF4118) BRN52_04670 PF13492 GAF domain BRN52_04670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_04670 PF00512 His Kinase A (phospho-acceptor) domain BRN52_04670 PF02702 Osmosensitive K+ channel His kinase sensor domain BRN52_04675 PF00486 Transcriptional regulatory protein, C terminal BRN52_04675 PF00072 Response regulator receiver domain BRN52_04680 PF02913 FAD linked oxidases, C-terminal domain BRN52_04680 PF01565 FAD binding domain BRN52_04685 PF04307 LexA-binding, inner membrane-associated putative hydrolase BRN52_04690 PF02021 Uncharacterised protein family UPF0102 BRN52_04700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRN52_04720 PF02381 MraZ protein, putative antitoxin-like BRN52_04725 PF01795 MraW methylase family BRN52_04730 PF04999 Cell division protein FtsL BRN52_04735 PF03717 Penicillin-binding Protein dimerisation domain BRN52_04735 PF00905 Penicillin binding protein transpeptidase domain BRN52_04740 PF02875 Mur ligase family, glutamate ligase domain BRN52_04740 PF08245 Mur ligase middle domain BRN52_04740 PF01225 Mur ligase family, catalytic domain BRN52_04745 PF08245 Mur ligase middle domain BRN52_04745 PF01225 Mur ligase family, catalytic domain BRN52_04745 PF02875 Mur ligase family, glutamate ligase domain BRN52_04750 PF00953 Glycosyl transferase family 4 BRN52_04755 PF01098 Cell cycle protein BRN52_04760 PF03033 Glycosyltransferase family 28 N-terminal domain BRN52_04760 PF04101 Glycosyltransferase family 28 C-terminal domain BRN52_04765 PF08245 Mur ligase middle domain BRN52_04765 PF01225 Mur ligase family, catalytic domain BRN52_04765 PF02875 Mur ligase family, glutamate ligase domain BRN52_04770 PF01820 D-ala D-ala ligase N-terminus BRN52_04770 PF07478 D-ala D-ala ligase C-terminus BRN52_04775 PF03799 Cell division protein FtsQ BRN52_04775 PF08478 POTRA domain, FtsQ-type BRN52_04780 PF02491 SHS2 domain inserted in FTSA BRN52_04785 PF00091 Tubulin/FtsZ family, GTPase domain BRN52_04785 PF12327 FtsZ family, C-terminal domain BRN52_04790 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BRN52_04800 PF01551 Peptidase family M23 BRN52_04800 PF01476 LysM domain BRN52_04805 PF07516 SecA Wing and Scaffold domain BRN52_04805 PF01043 SecA preprotein cross-linking domain BRN52_04805 PF07517 SecA DEAD-like domain BRN52_04805 PF02810 SEC-C motif BRN52_04815 PF00293 NUDIX domain BRN52_04840 PF02219 Methylenetetrahydrofolate reductase BRN52_04855 PF14765 Polyketide synthase dehydratase BRN52_04855 PF00550 Phosphopantetheine attachment site BRN52_04855 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_04855 PF00107 Zinc-binding dehydrogenase BRN52_04855 PF16197 Ketoacyl-synthetase C-terminal extension BRN52_04855 PF00109 Beta-ketoacyl synthase, N-terminal domain BRN52_04855 PF08659 KR domain BRN52_04855 PF00698 Acyl transferase domain BRN52_04855 PF02801 Beta-ketoacyl synthase, C-terminal domain BRN52_04875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRN52_04910 PF13649 Methyltransferase domain BRN52_04915 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BRN52_04915 PF05221 S-adenosyl-L-homocysteine hydrolase BRN52_04925 PF00311 Phosphoenolpyruvate carboxylase BRN52_04950 PF00328 Histidine phosphatase superfamily (branch 2) BRN52_04955 PF02772 S-adenosylmethionine synthetase, central domain BRN52_04955 PF02773 S-adenosylmethionine synthetase, C-terminal domain BRN52_04955 PF00438 S-adenosylmethionine synthetase, N-terminal domain BRN52_04970 PF01207 Dihydrouridine synthase (Dus) BRN52_04990 PF00294 pfkB family carbohydrate kinase BRN52_04995 PF07662 Na+ dependent nucleoside transporter C-terminus BRN52_04995 PF07670 Nucleoside recognition BRN52_04995 PF01773 Na+ dependent nucleoside transporter N-terminus BRN52_05005 PF00248 Aldo/keto reductase family BRN52_05055 PF00005 ABC transporter BRN52_05065 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BRN52_05075 PF00005 ABC transporter BRN52_05080 PF13472 GDSL-like Lipase/Acylhydrolase family BRN52_05085 PF00072 Response regulator receiver domain BRN52_05085 PF00486 Transcriptional regulatory protein, C terminal BRN52_05090 PF00512 His Kinase A (phospho-acceptor) domain BRN52_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_05090 PF08521 Two-component sensor kinase N-terminal BRN52_05105 PF01219 Prokaryotic diacylglycerol kinase BRN52_05125 PF01790 Prolipoprotein diacylglyceryl transferase BRN52_05130 PF00303 Thymidylate synthase BRN52_05140 PF00186 Dihydrofolate reductase BRN52_05145 PF00149 Calcineurin-like phosphoesterase BRN52_05150 PF04379 ApaG domain BRN52_05155 PF00398 Ribosomal RNA adenine dimethylase BRN52_05165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BRN52_05170 PF09312 SurA N-terminal domain BRN52_05170 PF00639 PPIC-type PPIASE domain BRN52_05175 PF03968 OstA-like protein BRN52_05175 PF04453 LPS transport system D BRN52_05180 PF00850 Histone deacetylase domain BRN52_05185 PF01923 Cobalamin adenosyltransferase BRN52_05195 PF01494 FAD binding domain BRN52_05200 PF01494 FAD binding domain BRN52_05230 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRN52_05240 PF03466 LysR substrate binding domain BRN52_05240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_05245 PF13193 AMP-binding enzyme C-terminal domain BRN52_05245 PF00501 AMP-binding enzyme BRN52_05250 PF00171 Aldehyde dehydrogenase family BRN52_05255 PF00378 Enoyl-CoA hydratase/isomerase BRN52_05275 PF08450 SMP-30/Gluconolactonase/LRE-like region BRN52_05280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BRN52_05280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BRN52_05285 PF18125 RlmM ferredoxin-like domain BRN52_05285 PF01728 FtsJ-like methyltransferase BRN52_05340 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BRN52_05340 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRN52_05360 PF00072 Response regulator receiver domain BRN52_05360 PF00990 Diguanylate cyclase, GGDEF domain BRN52_05365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_05365 PF00512 His Kinase A (phospho-acceptor) domain BRN52_05365 PF17149 Periplasmic sensor domain found in signal transduction proteins BRN52_05365 PF00672 HAMP domain BRN52_05365 PF00072 Response regulator receiver domain BRN52_05365 PF01627 Hpt domain BRN52_05390 PF00196 Bacterial regulatory proteins, luxR family BRN52_05390 PF00072 Response regulator receiver domain BRN52_05410 PF01625 Peptide methionine sulfoxide reductase BRN52_05445 PF00923 Transaldolase/Fructose-6-phosphate aldolase BRN52_05450 PF01272 Transcription elongation factor, GreA/GreB, C-term BRN52_05450 PF03449 Transcription elongation factor, N-terminal BRN52_05460 PF03466 LysR substrate binding domain BRN52_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_05465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_05465 PF13192 Thioredoxin domain BRN52_05470 PF00578 AhpC/TSA family BRN52_05470 PF10417 C-terminal domain of 1-Cys peroxiredoxin BRN52_05475 PF05175 Methyltransferase small domain BRN52_05475 PF17827 PrmC N-terminal domain BRN52_05500 PF00561 alpha/beta hydrolase fold BRN52_05510 PF00293 NUDIX domain BRN52_05515 PF01367 5'-3' exonuclease, C-terminal SAM fold BRN52_05515 PF01612 3'-5' exonuclease BRN52_05515 PF00476 DNA polymerase family A BRN52_05515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BRN52_05530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BRN52_05530 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRN52_05530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BRN52_05550 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BRN52_05555 PF02233 NAD(P) transhydrogenase beta subunit BRN52_05585 PF01063 Amino-transferase class IV BRN52_05600 PF04151 Bacterial pre-peptidase C-terminal domain BRN52_05600 PF00082 Subtilase family BRN52_05605 PF04073 Aminoacyl-tRNA editing domain BRN52_05615 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BRN52_05615 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BRN52_05630 PF03358 NADPH-dependent FMN reductase BRN52_05635 PF03631 Virulence factor BrkB BRN52_05640 PF08534 Redoxin BRN52_05645 PF00708 Acylphosphatase BRN52_05655 PF03976 Polyphosphate kinase 2 (PPK2) BRN52_05660 PF00994 Probable molybdopterin binding domain BRN52_05670 PF03462 PCRF domain BRN52_05670 PF00472 RF-1 domain BRN52_05675 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BRN52_05675 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BRN52_05675 PF01488 Shikimate / quinate 5-dehydrogenase BRN52_05685 PF03550 Outer membrane lipoprotein LolB BRN52_05690 PF00288 GHMP kinases N terminal domain BRN52_05690 PF08544 GHMP kinases C terminal BRN52_05700 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BRN52_05700 PF14572 Phosphoribosyl synthetase-associated domain BRN52_05705 PF14693 Ribosomal protein TL5, C-terminal domain BRN52_05705 PF01386 Ribosomal L25p family BRN52_05710 PF01195 Peptidyl-tRNA hydrolase BRN52_05715 PF01926 50S ribosome-binding GTPase BRN52_05715 PF06071 Protein of unknown function (DUF933) BRN52_05735 PF03144 Elongation factor Tu domain 2 BRN52_05735 PF00009 Elongation factor Tu GTP binding domain BRN52_05735 PF03143 Elongation factor Tu C-terminal domain BRN52_05745 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BRN52_05750 PF02357 Transcription termination factor nusG BRN52_05750 PF00467 KOW motif BRN52_05760 PF03946 Ribosomal protein L11, N-terminal domain BRN52_05760 PF00298 Ribosomal protein L11, RNA binding domain BRN52_05765 PF00687 Ribosomal protein L1p/L10e family BRN52_05770 PF00466 Ribosomal protein L10 BRN52_05775 PF16320 Ribosomal protein L7/L12 dimerisation domain BRN52_05775 PF00542 Ribosomal protein L7/L12 C-terminal domain BRN52_05780 PF00562 RNA polymerase Rpb2, domain 6 BRN52_05780 PF04561 RNA polymerase Rpb2, domain 2 BRN52_05780 PF04565 RNA polymerase Rpb2, domain 3 BRN52_05780 PF04560 RNA polymerase Rpb2, domain 7 BRN52_05780 PF10385 RNA polymerase beta subunit external 1 domain BRN52_05780 PF04563 RNA polymerase beta subunit BRN52_05785 PF04983 RNA polymerase Rpb1, domain 3 BRN52_05785 PF04998 RNA polymerase Rpb1, domain 5 BRN52_05785 PF05000 RNA polymerase Rpb1, domain 4 BRN52_05785 PF04997 RNA polymerase Rpb1, domain 1 BRN52_05785 PF00623 RNA polymerase Rpb1, domain 2 BRN52_05790 PF00164 Ribosomal protein S12/S23 BRN52_05795 PF00177 Ribosomal protein S7p/S5e BRN52_05800 PF00679 Elongation factor G C-terminus BRN52_05800 PF03764 Elongation factor G, domain IV BRN52_05800 PF03144 Elongation factor Tu domain 2 BRN52_05800 PF14492 Elongation Factor G, domain II BRN52_05800 PF00009 Elongation factor Tu GTP binding domain BRN52_05805 PF03143 Elongation factor Tu C-terminal domain BRN52_05805 PF00009 Elongation factor Tu GTP binding domain BRN52_05805 PF03144 Elongation factor Tu domain 2 BRN52_05815 PF00338 Ribosomal protein S10p/S20e BRN52_05820 PF00297 Ribosomal protein L3 BRN52_05825 PF00573 Ribosomal protein L4/L1 family BRN52_05830 PF00276 Ribosomal protein L23 BRN52_05835 PF03947 Ribosomal Proteins L2, C-terminal domain BRN52_05835 PF00181 Ribosomal Proteins L2, RNA binding domain BRN52_05840 PF00203 Ribosomal protein S19 BRN52_05845 PF00237 Ribosomal protein L22p/L17e BRN52_05850 PF07650 KH domain BRN52_05850 PF00189 Ribosomal protein S3, C-terminal domain BRN52_05855 PF00252 Ribosomal protein L16p/L10e BRN52_05860 PF00831 Ribosomal L29 protein BRN52_05865 PF00366 Ribosomal protein S17 BRN52_05870 PF00238 Ribosomal protein L14p/L23e BRN52_05875 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BRN52_05875 PF00467 KOW motif BRN52_05880 PF00281 Ribosomal protein L5 BRN52_05880 PF00673 ribosomal L5P family C-terminus BRN52_05885 PF00253 Ribosomal protein S14p/S29e BRN52_05890 PF00410 Ribosomal protein S8 BRN52_05895 PF00347 Ribosomal protein L6 BRN52_05900 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BRN52_05905 PF00333 Ribosomal protein S5, N-terminal domain BRN52_05905 PF03719 Ribosomal protein S5, C-terminal domain BRN52_05910 PF00327 Ribosomal protein L30p/L7e BRN52_05915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BRN52_05920 PF00344 SecY translocase BRN52_05925 PF00416 Ribosomal protein S13/S18 BRN52_05930 PF00411 Ribosomal protein S11 BRN52_05935 PF01479 S4 domain BRN52_05935 PF00163 Ribosomal protein S4/S9 N-terminal domain BRN52_05940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BRN52_05940 PF01000 RNA polymerase Rpb3/RpoA insert domain BRN52_05940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BRN52_05945 PF01196 Ribosomal protein L17 BRN52_06000 PF02347 Glycine cleavage system P-protein BRN52_06020 PF03412 Peptidase C39 family BRN52_06020 PF00664 ABC transporter transmembrane region BRN52_06020 PF00005 ABC transporter BRN52_06040 PF00884 Sulfatase BRN52_06040 PF08019 Phosphoethanolamine transferase EptA/EptB BRN52_06050 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BRN52_06055 PF00486 Transcriptional regulatory protein, C terminal BRN52_06055 PF00072 Response regulator receiver domain BRN52_06060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_06060 PF08521 Two-component sensor kinase N-terminal BRN52_06060 PF00512 His Kinase A (phospho-acceptor) domain BRN52_06070 PF03776 Septum formation topological specificity factor MinE BRN52_06075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BRN52_06080 PF03775 Septum formation inhibitor MinC, C-terminal domain BRN52_06080 PF05209 Septum formation inhibitor MinC, N-terminal domain BRN52_06095 PF07730 Histidine kinase BRN52_06100 PF00196 Bacterial regulatory proteins, luxR family BRN52_06100 PF00072 Response regulator receiver domain BRN52_06115 PF00730 HhH-GPD superfamily base excision DNA repair protein BRN52_06140 PF02222 ATP-grasp domain BRN52_06145 PF01527 Transposase BRN52_06180 PF04972 BON domain BRN52_06180 PF00691 OmpA family BRN52_06205 PF03781 Sulfatase-modifying factor enzyme 1 BRN52_06215 PF03781 Sulfatase-modifying factor enzyme 1 BRN52_06220 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06255 PF03781 Sulfatase-modifying factor enzyme 1 BRN52_06260 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06325 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06325 PF16671 Actin cross-linking domain BRN52_06350 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06350 PF16671 Actin cross-linking domain BRN52_06360 PF16671 Actin cross-linking domain BRN52_06360 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06415 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_06415 PF17871 AAA lid domain BRN52_06415 PF07724 AAA domain (Cdc48 subfamily) BRN52_06415 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_06425 PF04717 Type VI secretion system, phage-baseplate injector BRN52_06425 PF16671 Actin cross-linking domain BRN52_06475 PF01420 Type I restriction modification DNA specificity domain BRN52_06480 PF02384 N-6 DNA Methylase BRN52_06490 PF00271 Helicase conserved C-terminal domain BRN52_06490 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRN52_06490 PF08463 EcoEI R protein C-terminal BRN52_06490 PF04851 Type III restriction enzyme, res subunit BRN52_06510 PF02384 N-6 DNA Methylase BRN52_06515 PF08780 Nucleotidyltransferase substrate binding protein like BRN52_06525 PF01420 Type I restriction modification DNA specificity domain BRN52_06530 PF11867 Domain of unknown function (DUF3387) BRN52_06530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BRN52_06530 PF18766 SWI2/SNF2 ATPase BRN52_06595 PF01726 LexA DNA binding domain BRN52_06595 PF00717 Peptidase S24-like BRN52_06615 PF02811 PHP domain BRN52_06615 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRN52_06615 PF14579 Helix-hairpin-helix motif BRN52_06615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRN52_06635 PF03169 OPT oligopeptide transporter protein BRN52_06660 PF07676 WD40-like Beta Propeller Repeat BRN52_06660 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRN52_06660 PF00326 Prolyl oligopeptidase family BRN52_06680 PF12833 Helix-turn-helix domain BRN52_06680 PF02311 AraC-like ligand binding domain BRN52_06710 PF18011 C-terminal domain found in long catalases BRN52_06710 PF06628 Catalase-related immune-responsive BRN52_06710 PF00199 Catalase BRN52_06725 PF01609 Transposase DDE domain BRN52_06725 PF05598 Transposase domain (DUF772) BRN52_06760 PF00162 Phosphoglycerate kinase BRN52_06770 PF02887 Pyruvate kinase, alpha/beta domain BRN52_06770 PF00224 Pyruvate kinase, barrel domain BRN52_06780 PF00274 Fructose-bisphosphate aldolase class-I BRN52_06785 PF01661 Macro domain BRN52_06800 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_06805 PF14824 Sirohaem biosynthesis protein central BRN52_06805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRN52_06805 PF10414 Sirohaem synthase dimerisation region BRN52_06810 PF03466 LysR substrate binding domain BRN52_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_06840 PF00672 HAMP domain BRN52_06840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_06840 PF00512 His Kinase A (phospho-acceptor) domain BRN52_06840 PF01627 Hpt domain BRN52_06840 PF00072 Response regulator receiver domain BRN52_06860 PF01507 Phosphoadenosine phosphosulfate reductase family BRN52_06865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BRN52_06865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BRN52_06870 PF00667 FAD binding domain BRN52_06870 PF00258 Flavodoxin BRN52_06870 PF00175 Oxidoreductase NAD-binding domain BRN52_06875 PF01507 Phosphoadenosine phosphosulfate reductase family BRN52_06880 PF00009 Elongation factor Tu GTP binding domain BRN52_06890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_06890 PF00529 HlyD membrane-fusion protein of T1SS BRN52_06895 PF00873 AcrB/AcrD/AcrF family BRN52_06900 PF11838 ERAP1-like C-terminal domain BRN52_06900 PF01433 Peptidase family M1 domain BRN52_06930 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRN52_06930 PF00588 SpoU rRNA Methylase family BRN52_06965 PF01741 Large-conductance mechanosensitive channel, MscL BRN52_06970 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRN52_07000 PF02080 TrkA-C domain BRN52_07000 PF03600 Citrate transporter BRN52_07005 PF02390 Putative methyltransferase BRN52_07015 PF05690 Thiazole biosynthesis protein ThiG BRN52_07030 PF03797 Autotransporter beta-domain BRN52_07030 PF00657 GDSL-like Lipase/Acylhydrolase BRN52_07115 PF01609 Transposase DDE domain BRN52_07115 PF05598 Transposase domain (DUF772) BRN52_07120 PF00128 Alpha amylase, catalytic domain BRN52_07120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BRN52_07140 PF05598 Transposase domain (DUF772) BRN52_07140 PF01609 Transposase DDE domain BRN52_07200 PF00085 Thioredoxin BRN52_07210 PF13603 Leucyl-tRNA synthetase, Domain 2 BRN52_07210 PF00133 tRNA synthetases class I (I, L, M and V) BRN52_07210 PF08264 Anticodon-binding domain of tRNA BRN52_07230 PF01467 Cytidylyltransferase-like BRN52_07255 PF02590 Predicted SPOUT methyltransferase BRN52_07285 PF01609 Transposase DDE domain BRN52_07285 PF05598 Transposase domain (DUF772) BRN52_07295 PF04402 Protein of unknown function (DUF541) BRN52_07300 PF02545 Maf-like protein BRN52_07305 PF10150 Ribonuclease E/G family BRN52_07305 PF00575 S1 RNA binding domain BRN52_07310 PF13502 AsmA-like C-terminal region BRN52_07310 PF13116 Protein of unknown function BRN52_07320 PF01523 Putative modulator of DNA gyrase BRN52_07325 PF04751 Protein of unknown function (DUF615) BRN52_07330 PF01523 Putative modulator of DNA gyrase BRN52_07355 PF00348 Polyprenyl synthetase BRN52_07360 PF02609 Exonuclease VII small subunit BRN52_07365 PF01171 PP-loop family BRN52_07365 PF11734 TilS substrate C-terminal domain BRN52_07365 PF09179 TilS substrate binding domain BRN52_07370 PF00245 Alkaline phosphatase BRN52_07375 PF00375 Sodium:dicarboxylate symporter family BRN52_07390 PF00877 NlpC/P60 family BRN52_07395 PF00877 NlpC/P60 family BRN52_07400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRN52_07405 PF04235 Protein of unknown function (DUF418) BRN52_07410 PF01266 FAD dependent oxidoreductase BRN52_07455 PF10609 NUBPL iron-transfer P-loop NTPase BRN52_07460 PF00692 dUTPase BRN52_07480 PF01738 Dienelactone hydrolase family BRN52_07485 PF04055 Radical SAM superfamily BRN52_07485 PF18693 TRAM domain BRN52_07485 PF00919 Uncharacterized protein family UPF0004 BRN52_07490 PF01272 Transcription elongation factor, GreA/GreB, C-term BRN52_07490 PF03449 Transcription elongation factor, N-terminal BRN52_07530 PF02666 Phosphatidylserine decarboxylase BRN52_07535 PF02630 SCO1/SenC BRN52_07540 PF05175 Methyltransferase small domain BRN52_07545 PF01264 Chorismate synthase BRN52_07550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRN52_07550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRN52_07555 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRN52_07555 PF02774 Semialdehyde dehydrogenase, dimerisation domain BRN52_07575 PF01416 tRNA pseudouridine synthase BRN52_07580 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BRN52_07585 PF03466 LysR substrate binding domain BRN52_07585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_07590 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_07600 PF00290 Tryptophan synthase alpha chain BRN52_07605 PF17848 Acetyl-coA carboxylase zinc finger domain BRN52_07605 PF01039 Carboxyl transferase domain BRN52_07610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRN52_07610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRN52_07610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRN52_07610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRN52_07625 PF00563 EAL domain BRN52_07625 PF00990 Diguanylate cyclase, GGDEF domain BRN52_07625 PF03707 Bacterial signalling protein N terminal repeat BRN52_07660 PF00121 Triosephosphate isomerase BRN52_07675 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BRN52_07680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BRN52_07685 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BRN52_07690 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BRN52_07700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BRN52_07700 PF10531 SLBB domain BRN52_07700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BRN52_07705 PF00384 Molybdopterin oxidoreductase BRN52_07705 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BRN52_07705 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BRN52_07710 PF00146 NADH dehydrogenase BRN52_07715 PF12838 4Fe-4S dicluster domain BRN52_07720 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BRN52_07725 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BRN52_07730 PF00361 Proton-conducting membrane transporter BRN52_07730 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRN52_07735 PF00361 Proton-conducting membrane transporter BRN52_07735 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BRN52_07740 PF00361 Proton-conducting membrane transporter BRN52_07750 PF17384 RimP C-terminal SH3 domain BRN52_07750 PF02576 RimP N-terminal domain BRN52_07755 PF00575 S1 RNA binding domain BRN52_07755 PF08529 NusA N-terminal domain BRN52_07755 PF13184 NusA-like KH domain BRN52_07760 PF04760 Translation initiation factor IF-2, N-terminal region BRN52_07760 PF08364 Bacterial translation initiation factor IF-2 associated region BRN52_07760 PF11987 Translation-initiation factor 2 BRN52_07760 PF00009 Elongation factor Tu GTP binding domain BRN52_07765 PF02033 Ribosome-binding factor A BRN52_07770 PF01509 TruB family pseudouridylate synthase (N terminal domain) BRN52_07770 PF16198 tRNA pseudouridylate synthase B C-terminal domain BRN52_07770 PF09157 Pseudouridine synthase II TruB, C-terminal BRN52_07775 PF00312 Ribosomal protein S15 BRN52_07780 PF00575 S1 RNA binding domain BRN52_07780 PF01138 3' exoribonuclease family, domain 1 BRN52_07780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BRN52_07780 PF00013 KH domain BRN52_07780 PF03725 3' exoribonuclease family, domain 2 BRN52_07790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BRN52_07790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BRN52_07800 PF00731 AIR carboxylase BRN52_07805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BRN52_07805 PF02222 ATP-grasp domain BRN52_07810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRN52_07810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRN52_07815 PF00462 Glutaredoxin BRN52_07825 PF01914 MarC family integral membrane protein BRN52_07835 PF00593 TonB dependent receptor BRN52_07840 PF11892 Domain of unknown function (DUF3412) BRN52_07840 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BRN52_07840 PF03641 Possible lysine decarboxylase BRN52_07845 PF01609 Transposase DDE domain BRN52_07845 PF05598 Transposase domain (DUF772) BRN52_07850 PF12019 Type II transport protein GspH BRN52_07850 PF07963 Prokaryotic N-terminal methylation motif BRN52_07875 PF05567 Neisseria PilC beta-propeller domain BRN52_07880 PF00114 Pilin (bacterial filament) BRN52_07880 PF07963 Prokaryotic N-terminal methylation motif BRN52_07890 PF00114 Pilin (bacterial filament) BRN52_07890 PF07963 Prokaryotic N-terminal methylation motif BRN52_07895 PF12344 Ultra-violet resistance protein B BRN52_07895 PF00271 Helicase conserved C-terminal domain BRN52_07895 PF04851 Type III restriction enzyme, res subunit BRN52_07895 PF02151 UvrB/uvrC motif BRN52_07895 PF17757 UvrB interaction domain BRN52_07935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRN52_07935 PF02824 TGS domain BRN52_07935 PF03129 Anticodon binding domain BRN52_07935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRN52_07940 PF00707 Translation initiation factor IF-3, C-terminal domain BRN52_07940 PF05198 Translation initiation factor IF-3, N-terminal domain BRN52_07945 PF01632 Ribosomal protein L35 BRN52_07950 PF00453 Ribosomal protein L20 BRN52_07955 PF01409 tRNA synthetases class II core domain (F) BRN52_07955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BRN52_07960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BRN52_07960 PF03484 tRNA synthetase B5 domain BRN52_07960 PF01588 Putative tRNA binding domain BRN52_07960 PF03483 B3/4 domain BRN52_07960 PF03147 Ferredoxin-fold anticodon binding domain BRN52_07965 PF00216 Bacterial DNA-binding protein BRN52_07970 PF13411 MerR HTH family regulatory protein BRN52_07990 PF02397 Bacterial sugar transferase BRN52_08010 PF00534 Glycosyl transferases group 1 BRN52_08010 PF13439 Glycosyltransferase Family 4 BRN52_08020 PF14667 Polysaccharide biosynthesis C-terminal domain BRN52_08035 PF03808 Glycosyl transferase WecB/TagA/CpsF family BRN52_08065 PF08212 Lipocalin-like domain BRN52_08175 PF04362 Bacterial Fe(2+) trafficking BRN52_08180 PF00633 Helix-hairpin-helix motif BRN52_08180 PF00730 HhH-GPD superfamily base excision DNA repair protein BRN52_08180 PF14815 NUDIX domain BRN52_08195 PF00448 SRP54-type protein, GTPase domain BRN52_08195 PF02881 SRP54-type protein, helical bundle domain BRN52_08205 PF05544 Proline racemase BRN52_08210 PF01266 FAD dependent oxidoreductase BRN52_08220 PF04324 BFD-like [2Fe-2S] binding domain BRN52_08220 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_08225 PF00701 Dihydrodipicolinate synthetase family BRN52_08230 PF00171 Aldehyde dehydrogenase family BRN52_08235 PF00557 Metallopeptidase family M24 BRN52_08235 PF01321 Creatinase/Prolidase N-terminal domain BRN52_08250 PF13520 Amino acid permease BRN52_08290 PF00082 Subtilase family BRN52_08290 PF09286 Pro-kumamolisin, activation domain BRN52_08300 PF00593 TonB dependent receptor BRN52_08300 PF07715 TonB-dependent Receptor Plug Domain BRN52_08305 PF07532 Bacterial Ig-like domain (group 4) BRN52_08310 PF04616 Glycosyl hydrolases family 43 BRN52_08330 PF07715 TonB-dependent Receptor Plug Domain BRN52_08330 PF00593 TonB dependent receptor BRN52_08395 PF03454 MoeA C-terminal region (domain IV) BRN52_08395 PF00994 Probable molybdopterin binding domain BRN52_08395 PF03453 MoeA N-terminal region (domain I and II) BRN52_08400 PF12804 MobA-like NTP transferase domain BRN52_08425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BRN52_08425 PF14824 Sirohaem biosynthesis protein central BRN52_08425 PF10414 Sirohaem synthase dimerisation region BRN52_08455 PF01609 Transposase DDE domain BRN52_08455 PF05598 Transposase domain (DUF772) BRN52_08485 PF01648 4'-phosphopantetheinyl transferase superfamily BRN52_08485 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BRN52_08495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRN52_08495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRN52_08495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRN52_08505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRN52_08520 PF00196 Bacterial regulatory proteins, luxR family BRN52_08520 PF00072 Response regulator receiver domain BRN52_08535 PF10150 Ribonuclease E/G family BRN52_08535 PF12111 Polyribonucleotide phosphorylase C terminal BRN52_08535 PF00575 S1 RNA binding domain BRN52_08540 PF01479 S4 domain BRN52_08540 PF00849 RNA pseudouridylate synthase BRN52_08545 PF11737 Protein of unknown function (DUF3300) BRN52_08550 PF02535 ZIP Zinc transporter BRN52_08555 PF02535 ZIP Zinc transporter BRN52_08565 PF01329 Pterin 4 alpha carbinolamine dehydratase BRN52_08570 PF01106 NifU-like domain BRN52_08615 PF05598 Transposase domain (DUF772) BRN52_08645 PF05598 Transposase domain (DUF772) BRN52_08645 PF01609 Transposase DDE domain BRN52_08685 PF05638 Type VI secretion system effector, Hcp BRN52_08710 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_08710 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_08710 PF17871 AAA lid domain BRN52_08710 PF07724 AAA domain (Cdc48 subfamily) BRN52_08735 PF16671 Actin cross-linking domain BRN52_08735 PF04717 Type VI secretion system, phage-baseplate injector BRN52_08775 PF00069 Protein kinase domain BRN52_08795 PF03466 LysR substrate binding domain BRN52_08795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_08800 PF00512 His Kinase A (phospho-acceptor) domain BRN52_08805 PF03150 Di-haem cytochrome c peroxidase BRN52_08805 PF00034 Cytochrome c BRN52_08810 PF00486 Transcriptional regulatory protein, C terminal BRN52_08810 PF00072 Response regulator receiver domain BRN52_08860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_08860 PF00529 HlyD membrane-fusion protein of T1SS BRN52_08865 PF00873 AcrB/AcrD/AcrF family BRN52_08885 PF03377 TAL effector repeat BRN52_08900 PF03377 TAL effector repeat BRN52_08910 PF03918 Cytochrome C biogenesis protein BRN52_08915 PF08534 Redoxin BRN52_08920 PF01578 Cytochrome C assembly protein BRN52_08920 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRN52_08925 PF03100 CcmE BRN52_08930 PF04995 Heme exporter protein D (CcmD) BRN52_08935 PF01578 Cytochrome C assembly protein BRN52_08940 PF00082 Subtilase family BRN52_08950 PF04542 Sigma-70 region 2 BRN52_08950 PF08281 Sigma-70, region 4 BRN52_08960 PF00034 Cytochrome c BRN52_08975 PF05523 WxcM-like, C-terminal BRN52_08995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRN52_09000 PF01943 Polysaccharide biosynthesis protein BRN52_09005 PF00535 Glycosyl transferase family 2 BRN52_09020 PF08241 Methyltransferase domain BRN52_09040 PF00534 Glycosyl transferases group 1 BRN52_09040 PF13579 Glycosyl transferase 4-like domain BRN52_09055 PF00005 ABC transporter BRN52_09060 PF00005 ABC transporter BRN52_09060 PF00664 ABC transporter transmembrane region BRN52_09070 PF07690 Major Facilitator Superfamily BRN52_09090 PF00296 Luciferase-like monooxygenase BRN52_09105 PF03471 Transporter associated domain BRN52_09105 PF00571 CBS domain BRN52_09105 PF01595 Cyclin M transmembrane N-terminal domain BRN52_09120 PF01384 Phosphate transporter family BRN52_09140 PF00204 DNA gyrase B BRN52_09140 PF00986 DNA gyrase B subunit, carboxyl terminus BRN52_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_09140 PF01751 Toprim domain BRN52_09150 PF00117 Glutamine amidotransferase class-I BRN52_09150 PF06418 CTP synthase N-terminus BRN52_09155 PF00793 DAHP synthetase I family BRN52_09165 PF00113 Enolase, C-terminal TIM barrel domain BRN52_09165 PF03952 Enolase, N-terminal domain BRN52_09170 PF04977 Septum formation initiator BRN52_09175 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BRN52_09185 PF02542 YgbB family BRN52_09190 PF01142 tRNA pseudouridine synthase D (TruD) BRN52_09200 PF01713 Smr domain BRN52_09205 PF01975 Survival protein SurE BRN52_09215 PF09335 SNARE associated Golgi protein BRN52_09220 PF01551 Peptidase family M23 BRN52_09220 PF01476 LysM domain BRN52_09230 PF01985 CRS1 / YhbY (CRM) domain BRN52_09235 PF01728 FtsJ-like methyltransferase BRN52_09240 PF06480 FtsH Extracellular BRN52_09240 PF01434 Peptidase family M41 BRN52_09240 PF17862 AAA+ lid domain BRN52_09240 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_09245 PF00809 Pterin binding enzyme BRN52_09255 PF17209 Hfq protein BRN52_09260 PF01926 50S ribosome-binding GTPase BRN52_09260 PF13167 GTP-binding GTPase N-terminal BRN52_09260 PF16360 GTP-binding GTPase Middle Region BRN52_09265 PF02464 Competence-damaged protein BRN52_09270 PF03109 ABC1 family BRN52_09275 PF01726 LexA DNA binding domain BRN52_09275 PF00717 Peptidase S24-like BRN52_09280 PF00154 recA bacterial DNA recombination protein BRN52_09290 PF02631 RecX family BRN52_09295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BRN52_09295 PF02272 DHHA1 domain BRN52_09295 PF01411 tRNA synthetases class II (A) BRN52_09300 PF02599 Global regulator protein family BRN52_09325 PF03796 DnaB-like helicase C terminal domain BRN52_09325 PF00772 DnaB-like helicase N terminal domain BRN52_09350 PF02678 Pirin BRN52_09350 PF17954 Quercetinase C-terminal cupin domain BRN52_09355 PF03466 LysR substrate binding domain BRN52_09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_09385 PF08543 Phosphomethylpyrimidine kinase BRN52_09395 PF02562 PhoH-like protein BRN52_09395 PF13638 PIN domain BRN52_09400 PF00578 AhpC/TSA family BRN52_09415 PF00701 Dihydrodipicolinate synthetase family BRN52_09425 PF00037 4Fe-4S binding domain BRN52_09425 PF11953 Domain of unknown function (DUF3470) BRN52_09430 PF05035 2-keto-3-deoxy-galactonokinase BRN52_09435 PF08450 SMP-30/Gluconolactonase/LRE-like region BRN52_09440 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRN52_09440 PF13378 Enolase C-terminal domain-like BRN52_09445 PF01081 KDPG and KHG aldolase BRN52_09450 PF03466 LysR substrate binding domain BRN52_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_09460 PF01055 Glycosyl hydrolases family 31 BRN52_09460 PF16338 Domain of unknown function (DUF4968) BRN52_09460 PF17137 Domain of unknown function (DUF5110) BRN52_09470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BRN52_09470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BRN52_09480 PF00083 Sugar (and other) transporter BRN52_09500 PF01132 Elongation factor P (EF-P) OB domain BRN52_09500 PF09285 Elongation factor P, C-terminal BRN52_09500 PF08207 Elongation factor P (EF-P) KOW-like domain BRN52_09505 PF00106 short chain dehydrogenase BRN52_09510 PF00682 HMGL-like BRN52_09520 PF00378 Enoyl-CoA hydratase/isomerase BRN52_09530 PF07670 Nucleoside recognition BRN52_09530 PF02421 Ferrous iron transport protein B BRN52_09530 PF07664 Ferrous iron transport protein B C terminus BRN52_09550 PF00155 Aminotransferase class I and II BRN52_09555 PF03475 3-alpha domain BRN52_09555 PF03473 MOSC domain BRN52_09565 PF05173 Dihydrodipicolinate reductase, C-terminus BRN52_09565 PF01113 Dihydrodipicolinate reductase, N-terminus BRN52_09570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BRN52_09570 PF00117 Glutamine amidotransferase class-I BRN52_09580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRN52_09580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BRN52_09580 PF02142 MGS-like domain BRN52_09585 PF03449 Transcription elongation factor, N-terminal BRN52_09585 PF01272 Transcription elongation factor, GreA/GreB, C-term BRN52_09595 PF17768 RecJ OB domain BRN52_09595 PF02272 DHHA1 domain BRN52_09595 PF01368 DHH family BRN52_09640 PF13542 Helix-turn-helix domain of transposase family ISL3 BRN52_09640 PF01610 Transposase BRN52_09640 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 BRN52_09665 PF00152 tRNA synthetases class II (D, K and N) BRN52_09665 PF01336 OB-fold nucleic acid binding domain BRN52_09670 PF00072 Response regulator receiver domain BRN52_09680 PF01627 Hpt domain BRN52_09680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_09680 PF00512 His Kinase A (phospho-acceptor) domain BRN52_09680 PF00072 Response regulator receiver domain BRN52_09685 PF00378 Enoyl-CoA hydratase/isomerase BRN52_09690 PF13193 AMP-binding enzyme C-terminal domain BRN52_09690 PF00501 AMP-binding enzyme BRN52_09700 PF00694 Aconitase C-terminal domain BRN52_09700 PF00330 Aconitase family (aconitate hydratase) BRN52_09715 PF00330 Aconitase family (aconitate hydratase) BRN52_09715 PF11791 Aconitate B N-terminal domain BRN52_09715 PF06434 Aconitate hydratase 2 N-terminus BRN52_09720 PF00561 alpha/beta hydrolase fold BRN52_09735 PF03707 Bacterial signalling protein N terminal repeat BRN52_09735 PF00990 Diguanylate cyclase, GGDEF domain BRN52_09735 PF00563 EAL domain BRN52_09740 PF00072 Response regulator receiver domain BRN52_09740 PF01339 CheB methylesterase BRN52_09745 PF03975 CheD chemotactic sensory transduction BRN52_09750 PF03705 CheR methyltransferase, all-alpha domain BRN52_09750 PF01739 CheR methyltransferase, SAM binding domain BRN52_09755 PF02203 Tar ligand binding domain homologue BRN52_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09755 PF00672 HAMP domain BRN52_09780 PF01584 CheW-like domain BRN52_09785 PF07238 PilZ domain BRN52_09785 PF07317 Flagellar regulator YcgR BRN52_09800 PF00672 HAMP domain BRN52_09800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09800 PF02203 Tar ligand binding domain homologue BRN52_09805 PF00672 HAMP domain BRN52_09805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09805 PF02203 Tar ligand binding domain homologue BRN52_09810 PF00672 HAMP domain BRN52_09810 PF02203 Tar ligand binding domain homologue BRN52_09810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09815 PF00672 HAMP domain BRN52_09815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09815 PF02203 Tar ligand binding domain homologue BRN52_09825 PF02203 Tar ligand binding domain homologue BRN52_09825 PF00672 HAMP domain BRN52_09825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09840 PF02203 Tar ligand binding domain homologue BRN52_09840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09840 PF00672 HAMP domain BRN52_09855 PF02203 Tar ligand binding domain homologue BRN52_09855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_09855 PF00672 HAMP domain BRN52_09875 PF09078 CheY binding BRN52_09875 PF01584 CheW-like domain BRN52_09875 PF02895 Signal transducing histidine kinase, homodimeric domain BRN52_09875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_09875 PF01627 Hpt domain BRN52_09880 PF00072 Response regulator receiver domain BRN52_09890 PF01584 CheW-like domain BRN52_09895 PF13614 AAA domain BRN52_09900 PF00691 OmpA family BRN52_09900 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRN52_09905 PF01618 MotA/TolQ/ExbB proton channel family BRN52_09915 PF00593 TonB dependent receptor BRN52_09915 PF07715 TonB-dependent Receptor Plug Domain BRN52_09925 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRN52_09925 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRN52_09935 PF07715 TonB-dependent Receptor Plug Domain BRN52_09935 PF00593 TonB dependent receptor BRN52_10015 PF16671 Actin cross-linking domain BRN52_10015 PF04717 Type VI secretion system, phage-baseplate injector BRN52_10070 PF01609 Transposase DDE domain BRN52_10070 PF05598 Transposase domain (DUF772) BRN52_10085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BRN52_10090 PF00294 pfkB family carbohydrate kinase BRN52_10095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRN52_10095 PF00381 PTS HPr component phosphorylation site BRN52_10095 PF05524 PEP-utilising enzyme, N-terminal BRN52_10095 PF02896 PEP-utilising enzyme, TIM barrel domain BRN52_10095 PF00391 PEP-utilising enzyme, mobile domain BRN52_10100 PF00356 Bacterial regulatory proteins, lacI family BRN52_10120 PF00873 AcrB/AcrD/AcrF family BRN52_10125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_10125 PF00529 HlyD membrane-fusion protein of T1SS BRN52_10135 PF05088 Bacterial NAD-glutamate dehydrogenase BRN52_10145 PF05598 Transposase domain (DUF772) BRN52_10145 PF01609 Transposase DDE domain BRN52_10150 PF00072 Response regulator receiver domain BRN52_10155 PF01627 Hpt domain BRN52_10155 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRN52_10155 PF00672 HAMP domain BRN52_10155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_10155 PF00512 His Kinase A (phospho-acceptor) domain BRN52_10155 PF00072 Response regulator receiver domain BRN52_10160 PF04286 Protein of unknown function (DUF445) BRN52_10170 PF00005 ABC transporter BRN52_10175 PF00202 Aminotransferase class-III BRN52_10185 PF07690 Major Facilitator Superfamily BRN52_10190 PF02634 FdhD/NarQ family BRN52_10195 PF00384 Molybdopterin oxidoreductase BRN52_10205 PF07690 Major Facilitator Superfamily BRN52_10205 PF00083 Sugar (and other) transporter BRN52_10210 PF00990 Diguanylate cyclase, GGDEF domain BRN52_10210 PF00072 Response regulator receiver domain BRN52_10215 PF01266 FAD dependent oxidoreductase BRN52_10220 PF00120 Glutamine synthetase, catalytic domain BRN52_10230 PF00120 Glutamine synthetase, catalytic domain BRN52_10245 PF13533 Biotin-lipoyl like BRN52_10250 PF07690 Major Facilitator Superfamily BRN52_10255 PF02321 Outer membrane efflux protein BRN52_10260 PF00005 ABC transporter BRN52_10260 PF08402 TOBE domain BRN52_10265 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_10270 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_10280 PF00171 Aldehyde dehydrogenase family BRN52_10295 PF00571 CBS domain BRN52_10295 PF03471 Transporter associated domain BRN52_10305 PF02130 Uncharacterized protein family UPF0054 BRN52_10315 PF02562 PhoH-like protein BRN52_10320 PF00919 Uncharacterized protein family UPF0004 BRN52_10320 PF01938 TRAM domain BRN52_10320 PF04055 Radical SAM superfamily BRN52_10340 PF01464 Transglycosylase SLT domain BRN52_10350 PF00355 Rieske [2Fe-2S] domain BRN52_10350 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BRN52_10355 PF00032 Cytochrome b(C-terminal)/b6/petD BRN52_10355 PF00033 Cytochrome b/b6/petB BRN52_10360 PF02167 Cytochrome C1 family BRN52_10365 PF02798 Glutathione S-transferase, N-terminal domain BRN52_10365 PF00043 Glutathione S-transferase, C-terminal domain BRN52_10370 PF04386 Stringent starvation protein B BRN52_10415 PF00872 Transposase, Mutator family BRN52_10420 PF05598 Transposase domain (DUF772) BRN52_10420 PF01609 Transposase DDE domain BRN52_10440 PF14850 DNA-binding domain of Proline dehydrogenase BRN52_10440 PF01619 Proline dehydrogenase BRN52_10440 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRN52_10440 PF00171 Aldehyde dehydrogenase family BRN52_10495 PF00570 HRDC domain BRN52_10495 PF01612 3'-5' exonuclease BRN52_10510 PF03781 Sulfatase-modifying factor enzyme 1 BRN52_10525 PF02601 Exonuclease VII, large subunit BRN52_10525 PF13742 OB-fold nucleic acid binding domain BRN52_10530 PF08331 Domain of unknown function (DUF1730) BRN52_10535 PF01256 Carbohydrate kinase BRN52_10535 PF03853 YjeF-related protein N-terminus BRN52_10540 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BRN52_10545 PF11741 AMIN domain BRN52_10545 PF01520 N-acetylmuramoyl-L-alanine amidase BRN52_10550 PF01119 DNA mismatch repair protein, C-terminal domain BRN52_10550 PF08676 MutL C terminal dimerisation domain BRN52_10570 PF07879 PHB/PHA accumulation regulator DNA-binding domain BRN52_10570 PF05233 PHB accumulation regulatory domain BRN52_10575 PF00106 short chain dehydrogenase BRN52_10580 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRN52_10585 PF01435 Peptidase family M48 BRN52_10590 PF00072 Response regulator receiver domain BRN52_10590 PF00563 EAL domain BRN52_10590 PF00990 Diguanylate cyclase, GGDEF domain BRN52_10600 PF07152 YaeQ protein BRN52_10605 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BRN52_10610 PF00313 'Cold-shock' DNA-binding domain BRN52_10615 PF14497 Glutathione S-transferase, C-terminal domain BRN52_10615 PF02798 Glutathione S-transferase, N-terminal domain BRN52_10625 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BRN52_10630 PF00156 Phosphoribosyl transferase domain BRN52_10635 PF03880 DbpA RNA binding domain BRN52_10635 PF00270 DEAD/DEAH box helicase BRN52_10635 PF00271 Helicase conserved C-terminal domain BRN52_10660 PF00545 ribonuclease BRN52_10665 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BRN52_10665 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BRN52_10670 PF00459 Inositol monophosphatase family BRN52_10675 PF00588 SpoU rRNA Methylase family BRN52_10685 PF13188 PAS domain BRN52_10685 PF00563 EAL domain BRN52_10685 PF00990 Diguanylate cyclase, GGDEF domain BRN52_10685 PF03707 Bacterial signalling protein N terminal repeat BRN52_10690 PF04055 Radical SAM superfamily BRN52_10695 PF08207 Elongation factor P (EF-P) KOW-like domain BRN52_10695 PF01132 Elongation factor P (EF-P) OB domain BRN52_10695 PF09285 Elongation factor P, C-terminal BRN52_10705 PF01979 Amidohydrolase family BRN52_10715 PF13419 Haloacid dehalogenase-like hydrolase BRN52_10725 PF00295 Glycosyl hydrolases family 28 BRN52_10735 PF01095 Pectinesterase BRN52_10760 PF05598 Transposase domain (DUF772) BRN52_10760 PF01609 Transposase DDE domain BRN52_10790 PF08460 Bacterial SH3 domain BRN52_10790 PF01551 Peptidase family M23 BRN52_10795 PF01979 Amidohydrolase family BRN52_10800 PF01809 Putative membrane protein insertion efficiency factor BRN52_10805 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRN52_10820 PF02657 Fe-S metabolism associated domain BRN52_10825 PF09190 DALR domain BRN52_10825 PF01406 tRNA synthetases class I (C) catalytic domain BRN52_10835 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRN52_10835 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRN52_10840 PF00764 Arginosuccinate synthase BRN52_10850 PF07687 Peptidase dimerisation domain BRN52_10850 PF01546 Peptidase family M20/M25/M40 BRN52_10855 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BRN52_10855 PF00696 Amino acid kinase family BRN52_10865 PF01118 Semialdehyde dehydrogenase, NAD binding domain BRN52_10870 PF00206 Lyase BRN52_10885 PF01472 PUA domain BRN52_10885 PF00696 Amino acid kinase family BRN52_10890 PF00171 Aldehyde dehydrogenase family BRN52_10895 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BRN52_10895 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BRN52_10920 PF01654 Cytochrome bd terminal oxidase subunit I BRN52_10925 PF01654 Cytochrome bd terminal oxidase subunit I BRN52_10930 PF00005 ABC transporter BRN52_10930 PF00664 ABC transporter transmembrane region BRN52_10935 PF00664 ABC transporter transmembrane region BRN52_10935 PF00005 ABC transporter BRN52_10950 PF05598 Transposase domain (DUF772) BRN52_10995 PF00034 Cytochrome c BRN52_11015 PF00873 AcrB/AcrD/AcrF family BRN52_11045 PF03527 RHS protein BRN52_11045 PF05593 RHS Repeat BRN52_11080 PF02895 Signal transducing histidine kinase, homodimeric domain BRN52_11080 PF01584 CheW-like domain BRN52_11080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_11080 PF01627 Hpt domain BRN52_11080 PF07194 P2 response regulator binding domain BRN52_11085 PF04344 Chemotaxis phosphatase, CheZ BRN52_11090 PF00072 Response regulator receiver domain BRN52_11095 PF04539 Sigma-70 region 3 BRN52_11095 PF04542 Sigma-70 region 2 BRN52_11095 PF04545 Sigma-70, region 4 BRN52_11100 PF10609 NUBPL iron-transfer P-loop NTPase BRN52_11105 PF00448 SRP54-type protein, GTPase domain BRN52_11110 PF00771 FHIPEP family BRN52_11115 PF01312 FlhB HrpN YscU SpaS Family BRN52_11120 PF00563 EAL domain BRN52_11120 PF03707 Bacterial signalling protein N terminal repeat BRN52_11120 PF00990 Diguanylate cyclase, GGDEF domain BRN52_11125 PF00563 EAL domain BRN52_11125 PF00990 Diguanylate cyclase, GGDEF domain BRN52_11125 PF03707 Bacterial signalling protein N terminal repeat BRN52_11125 PF13188 PAS domain BRN52_11130 PF13188 PAS domain BRN52_11130 PF03707 Bacterial signalling protein N terminal repeat BRN52_11130 PF00563 EAL domain BRN52_11130 PF00990 Diguanylate cyclase, GGDEF domain BRN52_11135 PF01311 Bacterial export proteins, family 1 BRN52_11140 PF01313 Bacterial export proteins, family 3 BRN52_11150 PF00813 FliP family BRN52_11155 PF04347 Flagellar biosynthesis protein, FliO BRN52_11160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRN52_11165 PF02154 Flagellar motor switch protein FliM BRN52_11165 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BRN52_11185 PF18269 T3SS EscN ATPase C-terminal domain BRN52_11185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRN52_11195 PF14841 FliG middle domain BRN52_11195 PF14842 FliG N-terminal domain BRN52_11195 PF01706 FliG C-terminal domain BRN52_11200 PF01514 Secretory protein of YscJ/FliF family BRN52_11200 PF08345 Flagellar M-ring protein C-terminal BRN52_11205 PF02049 Flagellar hook-basal body complex protein FliE BRN52_11215 PF00534 Glycosyl transferases group 1 BRN52_11215 PF00535 Glycosyl transferase family 2 BRN52_11255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRN52_11255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRN52_11265 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BRN52_11270 PF02954 Bacterial regulatory protein, Fis family BRN52_11270 PF00158 Sigma-54 interaction domain BRN52_11270 PF00072 Response regulator receiver domain BRN52_11275 PF01339 CheB methylesterase BRN52_11275 PF00072 Response regulator receiver domain BRN52_11280 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRN52_11280 PF04963 Sigma-54 factor, core binding domain BRN52_11280 PF04552 Sigma-54, DNA binding domain BRN52_11285 PF00072 Response regulator receiver domain BRN52_11285 PF00196 Bacterial regulatory proteins, luxR family BRN52_11300 PF02561 Flagellar protein FliS BRN52_11305 PF07196 Flagellin hook IN motif BRN52_11305 PF07195 Flagellar hook-associated protein 2 C-terminus BRN52_11305 PF02465 Flagellar hook-associated protein 2 N-terminus BRN52_11310 PF00700 Bacterial flagellin C-terminal helical region BRN52_11310 PF00669 Bacterial flagellin N-terminal helical region BRN52_11320 PF07196 Flagellin hook IN motif BRN52_11320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRN52_11325 PF10135 Rod binding protein BRN52_11325 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BRN52_11330 PF02119 Flagellar P-ring protein BRN52_11335 PF02107 Flagellar L-ring protein BRN52_11340 PF00460 Flagella basal body rod protein BRN52_11340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRN52_11350 PF00460 Flagella basal body rod protein BRN52_11350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRN52_11355 PF07559 Flagellar basal body protein FlaE BRN52_11355 PF00460 Flagella basal body rod protein BRN52_11355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRN52_11360 PF03963 Flagellar hook capping protein - N-terminal region BRN52_11365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BRN52_11365 PF00460 Flagella basal body rod protein BRN52_11375 PF01584 CheW-like domain BRN52_11375 PF00072 Response regulator receiver domain BRN52_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_11395 PF13426 PAS domain BRN52_11395 PF00512 His Kinase A (phospho-acceptor) domain BRN52_11395 PF13188 PAS domain BRN52_11395 PF00989 PAS fold BRN52_11400 PF00563 EAL domain BRN52_11400 PF00990 Diguanylate cyclase, GGDEF domain BRN52_11400 PF03707 Bacterial signalling protein N terminal repeat BRN52_11405 PF07730 Histidine kinase BRN52_11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_11410 PF00563 EAL domain BRN52_11410 PF00990 Diguanylate cyclase, GGDEF domain BRN52_11410 PF08447 PAS fold BRN52_11410 PF08448 PAS fold BRN52_11425 PF12729 Four helix bundle sensory module for signal transduction BRN52_11425 PF00672 HAMP domain BRN52_11425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_11430 PF04356 Protein of unknown function (DUF489) BRN52_11440 PF00293 NUDIX domain BRN52_11445 PF02617 ATP-dependent Clp protease adaptor protein ClpS BRN52_11450 PF17871 AAA lid domain BRN52_11450 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_11450 PF02861 Clp amino terminal domain, pathogenicity island component BRN52_11450 PF07724 AAA domain (Cdc48 subfamily) BRN52_11450 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_11455 PF01176 Translation initiation factor 1A / IF-1 BRN52_11460 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BRN52_11475 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_11480 PF01580 FtsK/SpoIIIE family BRN52_11480 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BRN52_11480 PF09397 Ftsk gamma domain BRN52_11480 PF17854 FtsK alpha domain BRN52_11490 PF03548 Outer membrane lipoprotein carrier protein LolA BRN52_11505 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_11505 PF12002 MgsA AAA+ ATPase C terminal BRN52_11505 PF16193 AAA C-terminal domain BRN52_11515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BRN52_11525 PF00654 Voltage gated chloride channel BRN52_11530 PF00108 Thiolase, N-terminal domain BRN52_11530 PF02803 Thiolase, C-terminal domain BRN52_11535 PF00378 Enoyl-CoA hydratase/isomerase BRN52_11535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRN52_11535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRN52_11545 PF00334 Nucleoside diphosphate kinase BRN52_11550 PF04055 Radical SAM superfamily BRN52_11560 PF13464 Domain of unknown function (DUF4115) BRN52_11570 PF13360 PQQ-like domain BRN52_11570 PF01011 PQQ enzyme repeat BRN52_11575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BRN52_11575 PF01926 50S ribosome-binding GTPase BRN52_11580 PF03453 MoeA N-terminal region (domain I and II) BRN52_11580 PF03454 MoeA C-terminal region (domain IV) BRN52_11580 PF00994 Probable molybdopterin binding domain BRN52_11645 PF05598 Transposase domain (DUF772) BRN52_11660 PF00899 ThiF family BRN52_11675 PF05598 Transposase domain (DUF772) BRN52_11675 PF01609 Transposase DDE domain BRN52_11705 PF03079 ARD/ARD' family BRN52_11710 PF00596 Class II Aldolase and Adducin N-terminal domain BRN52_11715 PF13520 Amino acid permease BRN52_11720 PF13520 Amino acid permease BRN52_11730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRN52_11730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRN52_11735 PF02913 FAD linked oxidases, C-terminal domain BRN52_11735 PF01565 FAD binding domain BRN52_11760 PF03918 Cytochrome C biogenesis protein BRN52_11765 PF08534 Redoxin BRN52_11770 PF01578 Cytochrome C assembly protein BRN52_11770 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BRN52_11775 PF03100 CcmE BRN52_11785 PF01578 Cytochrome C assembly protein BRN52_11790 PF03379 CcmB protein BRN52_11795 PF00005 ABC transporter BRN52_11800 PF00155 Aminotransferase class I and II BRN52_11805 PF00795 Carbon-nitrogen hydrolase BRN52_11825 PF00849 RNA pseudouridylate synthase BRN52_11825 PF01479 S4 domain BRN52_11830 PF04079 Segregation and condensation complex subunit ScpB BRN52_11835 PF02616 Segregation and condensation protein ScpA BRN52_11840 PF03795 YCII-related domain BRN52_11850 PF00356 Bacterial regulatory proteins, lacI family BRN52_11870 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_11875 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_11900 PF00795 Carbon-nitrogen hydrolase BRN52_11910 PF04371 Porphyromonas-type peptidyl-arginine deiminase BRN52_11920 PF00444 Ribosomal protein L36 BRN52_11925 PF02224 Cytidylate kinase BRN52_11930 PF00575 S1 RNA binding domain BRN52_11935 PF00216 Bacterial DNA-binding protein BRN52_11945 PF18073 Rubredoxin metal binding domain BRN52_11950 PF00953 Glycosyl transferase family 4 BRN52_11955 PF02719 Polysaccharide biosynthesis protein BRN52_11960 PF00483 Nucleotidyl transferase BRN52_11980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BRN52_11980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BRN52_11985 PF00571 CBS domain BRN52_11985 PF00478 IMP dehydrogenase / GMP reductase domain BRN52_11990 PF00117 Glutamine amidotransferase class-I BRN52_11990 PF00958 GMP synthase C terminal domain BRN52_11990 PF02540 NAD synthase BRN52_11995 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BRN52_12000 PF00361 Proton-conducting membrane transporter BRN52_12000 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus BRN52_12000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BRN52_12005 PF03466 LysR substrate binding domain BRN52_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_12030 PF03601 Conserved hypothetical protein 698 BRN52_12035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_12035 PF03466 LysR substrate binding domain BRN52_12040 PF03466 LysR substrate binding domain BRN52_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_12050 PF00072 Response regulator receiver domain BRN52_12060 PF01566 Natural resistance-associated macrophage protein BRN52_12065 PF02742 Iron dependent repressor, metal binding and dimerisation domain BRN52_12065 PF01325 Iron dependent repressor, N-terminal DNA binding domain BRN52_12070 PF14437 MafB19-like deaminase BRN52_12075 PF00929 Exonuclease BRN52_12080 PF05552 Conserved TM helix BRN52_12080 PF00924 Mechanosensitive ion channel BRN52_12085 PF00391 PEP-utilising enzyme, mobile domain BRN52_12085 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BRN52_12085 PF02896 PEP-utilising enzyme, TIM barrel domain BRN52_12090 PF03618 Kinase/pyrophosphorylase BRN52_12110 PF01066 CDP-alcohol phosphatidyltransferase BRN52_12120 PF00561 alpha/beta hydrolase fold BRN52_12135 PF01266 FAD dependent oxidoreductase BRN52_12135 PF00355 Rieske [2Fe-2S] domain BRN52_12145 PF00575 S1 RNA binding domain BRN52_12145 PF17674 HHH domain BRN52_12145 PF16921 Tex protein YqgF-like domain BRN52_12145 PF09371 Tex-like protein N-terminal domain BRN52_12160 PF00072 Response regulator receiver domain BRN52_12170 PF04551 GcpE protein BRN52_12175 PF01569 PAP2 superfamily BRN52_12185 PF07690 Major Facilitator Superfamily BRN52_12200 PF01177 Asp/Glu/Hydantoin racemase BRN52_12205 PF00892 EamA-like transporter family BRN52_12210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BRN52_12210 PF01565 FAD binding domain BRN52_12215 PF01180 Dihydroorotate dehydrogenase BRN52_12230 PF00171 Aldehyde dehydrogenase family BRN52_12245 PF13840 ACT domain BRN52_12245 PF00696 Amino acid kinase family BRN52_12245 PF03447 Homoserine dehydrogenase, NAD binding domain BRN52_12245 PF01842 ACT domain BRN52_12245 PF00742 Homoserine dehydrogenase BRN52_12250 PF08544 GHMP kinases C terminal BRN52_12250 PF00288 GHMP kinases N terminal domain BRN52_12265 PF14821 Threonine synthase N terminus BRN52_12265 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_12280 PF03129 Anticodon binding domain BRN52_12280 PF13393 Histidyl-tRNA synthetase BRN52_12300 PF01634 ATP phosphoribosyltransferase BRN52_12300 PF08029 HisG, C-terminal domain BRN52_12305 PF00815 Histidinol dehydrogenase BRN52_12310 PF00155 Aminotransferase class I and II BRN52_12315 PF00475 Imidazoleglycerol-phosphate dehydratase BRN52_12320 PF00117 Glutamine amidotransferase class-I BRN52_12325 PF00977 Histidine biosynthesis protein BRN52_12330 PF00977 Histidine biosynthesis protein BRN52_12335 PF01502 Phosphoribosyl-AMP cyclohydrolase BRN52_12335 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BRN52_12345 PF03377 TAL effector repeat BRN52_12360 PF03377 TAL effector repeat BRN52_12435 PF01043 SecA preprotein cross-linking domain BRN52_12435 PF07516 SecA Wing and Scaffold domain BRN52_12435 PF07517 SecA DEAD-like domain BRN52_12435 PF02810 SEC-C motif BRN52_12445 PF03377 TAL effector repeat BRN52_12460 PF03377 TAL effector repeat BRN52_12480 PF03377 TAL effector repeat BRN52_12490 PF13333 Integrase core domain BRN52_12490 PF00665 Integrase core domain BRN52_12490 PF13276 HTH-like domain BRN52_12530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRN52_12550 PF01066 CDP-alcohol phosphatidyltransferase BRN52_12555 PF02151 UvrB/uvrC motif BRN52_12555 PF08459 UvrC Helix-hairpin-helix N-terminal BRN52_12555 PF01541 GIY-YIG catalytic domain BRN52_12565 PF01451 Low molecular weight phosphotyrosine protein phosphatase BRN52_12570 PF02348 Cytidylyltransferase BRN52_12575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BRN52_12580 PF00005 ABC transporter BRN52_12580 PF00664 ABC transporter transmembrane region BRN52_12590 PF01618 MotA/TolQ/ExbB proton channel family BRN52_12595 PF00753 Metallo-beta-lactamase superfamily BRN52_12595 PF03772 Competence protein BRN52_12615 PF00005 ABC transporter BRN52_12620 PF02687 FtsX-like permease family BRN52_12620 PF12704 MacB-like periplasmic core domain BRN52_12630 PF03937 Flavinator of succinate dehydrogenase BRN52_12635 PF13085 2Fe-2S iron-sulfur cluster binding domain BRN52_12645 PF00890 FAD binding domain BRN52_12645 PF02910 Fumarate reductase flavoprotein C-term BRN52_12650 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRN52_12655 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BRN52_12665 PF01571 Aminomethyltransferase folate-binding domain BRN52_12675 PF17912 MalK OB fold domain BRN52_12675 PF00005 ABC transporter BRN52_12680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRN52_12680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRN52_12685 PF02685 Glucokinase BRN52_12690 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BRN52_12695 PF00920 Dehydratase family BRN52_12700 PF01081 KDPG and KHG aldolase BRN52_12705 PF05598 Transposase domain (DUF772) BRN52_12735 PF00072 Response regulator receiver domain BRN52_12735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_12735 PF00672 HAMP domain BRN52_12735 PF00512 His Kinase A (phospho-acceptor) domain BRN52_12735 PF01627 Hpt domain BRN52_12735 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRN52_12745 PF13700 Domain of unknown function (DUF4158) BRN52_12745 PF01526 Tn3 transposase DDE domain BRN52_12755 PF00581 Rhodanese-like domain BRN52_12760 PF02040 Arsenical pump membrane protein BRN52_12765 PF03358 NADPH-dependent FMN reductase BRN52_12770 PF03960 ArsC family BRN52_12790 PF13175 AAA ATPase domain BRN52_12820 PF06480 FtsH Extracellular BRN52_12820 PF01434 Peptidase family M41 BRN52_12820 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_12820 PF17862 AAA+ lid domain BRN52_12870 PF00990 Diguanylate cyclase, GGDEF domain BRN52_12870 PF08448 PAS fold BRN52_12890 PF02253 Phospholipase A1 BRN52_12905 PF05683 Fumarase C-terminus BRN52_12905 PF05681 Fumarate hydratase (Fumerase) BRN52_12910 PF00005 ABC transporter BRN52_12915 PF00175 Oxidoreductase NAD-binding domain BRN52_12915 PF00970 Oxidoreductase FAD-binding domain BRN52_12920 PF00255 Glutathione peroxidase BRN52_12945 PF00082 Subtilase family BRN52_12950 PF04542 Sigma-70 region 2 BRN52_12950 PF08281 Sigma-70, region 4 BRN52_12960 PF12802 MarR family BRN52_12995 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_12995 PF14310 Fibronectin type III-like domain BRN52_12995 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRN52_13010 PF00360 Phytochrome region BRN52_13010 PF00990 Diguanylate cyclase, GGDEF domain BRN52_13010 PF01590 GAF domain BRN52_13010 PF00563 EAL domain BRN52_13020 PF00474 Sodium:solute symporter family BRN52_13030 PF14310 Fibronectin type III-like domain BRN52_13030 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRN52_13030 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_13055 PF00342 Phosphoglucose isomerase BRN52_13060 PF02261 Aspartate decarboxylase BRN52_13065 PF02569 Pantoate-beta-alanine ligase BRN52_13070 PF02548 Ketopantoate hydroxymethyltransferase BRN52_13075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BRN52_13090 PF02649 Type I GTP cyclohydrolase folE2 BRN52_13095 PF01520 N-acetylmuramoyl-L-alanine amidase BRN52_13110 PF05598 Transposase domain (DUF772) BRN52_13115 PF03797 Autotransporter beta-domain BRN52_13115 PF00082 Subtilase family BRN52_13125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_13130 PF00873 AcrB/AcrD/AcrF family BRN52_13135 PF02321 Outer membrane efflux protein BRN52_13140 PF00072 Response regulator receiver domain BRN52_13140 PF13426 PAS domain BRN52_13140 PF08448 PAS fold BRN52_13140 PF00512 His Kinase A (phospho-acceptor) domain BRN52_13140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_13145 PF00196 Bacterial regulatory proteins, luxR family BRN52_13145 PF00072 Response regulator receiver domain BRN52_13150 PF12951 Passenger-associated-transport-repeat BRN52_13155 PF05598 Transposase domain (DUF772) BRN52_13180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRN52_13185 PF00800 Prephenate dehydratase BRN52_13185 PF01842 ACT domain BRN52_13185 PF01817 Chorismate mutase type II BRN52_13190 PF00266 Aminotransferase class-V BRN52_13195 PF00174 Oxidoreductase molybdopterin binding domain BRN52_13205 PF01794 Ferric reductase like transmembrane component BRN52_13230 PF00392 Bacterial regulatory proteins, gntR family BRN52_13230 PF07702 UTRA domain BRN52_13240 PF07969 Amidohydrolase family BRN52_13245 PF00221 Aromatic amino acid lyase BRN52_13255 PF17392 Urocanase C-terminal domain BRN52_13255 PF01175 Urocanase Rossmann-like domain BRN52_13255 PF17391 Urocanase N-terminal domain BRN52_13275 PF03989 DNA gyrase C-terminal domain, beta-propeller BRN52_13275 PF00521 DNA gyrase/topoisomerase IV, subunit A BRN52_13280 PF01008 Initiation factor 2 subunit family BRN52_13295 PF00152 tRNA synthetases class II (D, K and N) BRN52_13300 PF00533 BRCA1 C Terminus (BRCT) domain BRN52_13300 PF01653 NAD-dependent DNA ligase adenylation domain BRN52_13300 PF03120 NAD-dependent DNA ligase OB-fold domain BRN52_13300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BRN52_13300 PF12826 Helix-hairpin-helix motif BRN52_13310 PF04354 ZipA, C-terminal FtsZ-binding domain BRN52_13315 PF02463 RecF/RecN/SMC N terminal domain BRN52_13320 PF03948 Ribosomal protein L9, C-terminal domain BRN52_13320 PF01281 Ribosomal protein L9, N-terminal domain BRN52_13325 PF01084 Ribosomal protein S18 BRN52_13330 PF01250 Ribosomal protein S6 BRN52_13335 PF01521 Iron-sulphur cluster biosynthesis BRN52_13345 PF01336 OB-fold nucleic acid binding domain BRN52_13345 PF00152 tRNA synthetases class II (D, K and N) BRN52_13370 PF00484 Carbonic anhydrase BRN52_13375 PF06052 3-hydroxyanthranilic acid dioxygenase BRN52_13390 PF00266 Aminotransferase class-V BRN52_13395 PF01494 FAD binding domain BRN52_13400 PF08411 Exonuclease C-terminal BRN52_13400 PF00929 Exonuclease BRN52_13410 PF00248 Aldo/keto reductase family BRN52_13425 PF01513 ATP-NAD kinase BRN52_13435 PF01170 Putative RNA methylase family UPF0020 BRN52_13435 PF10672 S-adenosylmethionine-dependent methyltransferase BRN52_13435 PF02926 THUMP domain BRN52_13475 PF00581 Rhodanese-like domain BRN52_13480 PF00293 NUDIX domain BRN52_13485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRN52_13485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRN52_13490 PF00378 Enoyl-CoA hydratase/isomerase BRN52_13500 PF10576 Iron-sulfur binding domain of endonuclease III BRN52_13500 PF00633 Helix-hairpin-helix motif BRN52_13500 PF00730 HhH-GPD superfamily base excision DNA repair protein BRN52_13510 PF00484 Carbonic anhydrase BRN52_13530 PF12849 PBP superfamily domain BRN52_13535 PF12849 PBP superfamily domain BRN52_13540 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_13545 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_13550 PF00005 ABC transporter BRN52_13555 PF01895 PhoU domain BRN52_13565 PF00929 Exonuclease BRN52_13585 PF00872 Transposase, Mutator family BRN52_13610 PF00589 Phage integrase family BRN52_13610 PF13495 Phage integrase, N-terminal SAM-like domain BRN52_13615 PF07549 SecD/SecF GG Motif BRN52_13615 PF02355 Protein export membrane protein BRN52_13620 PF07549 SecD/SecF GG Motif BRN52_13620 PF02355 Protein export membrane protein BRN52_13620 PF13721 SecD export protein N-terminal TM region BRN52_13625 PF02699 Preprotein translocase subunit BRN52_13630 PF01702 Queuine tRNA-ribosyltransferase BRN52_13635 PF02547 Queuosine biosynthesis protein BRN52_13670 PF05598 Transposase domain (DUF772) BRN52_13670 PF01609 Transposase DDE domain BRN52_13680 PF05598 Transposase domain (DUF772) BRN52_13715 PF04717 Type VI secretion system, phage-baseplate injector BRN52_13715 PF16671 Actin cross-linking domain BRN52_13730 PF03377 TAL effector repeat BRN52_13735 PF04717 Type VI secretion system, phage-baseplate injector BRN52_13735 PF16671 Actin cross-linking domain BRN52_13820 PF00037 4Fe-4S binding domain BRN52_13835 PF01467 Cytidylyltransferase-like BRN52_13845 PF00183 Hsp90 protein BRN52_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_13865 PF03377 TAL effector repeat BRN52_13885 PF03377 TAL effector repeat BRN52_13900 PF03377 TAL effector repeat BRN52_13920 PF03466 LysR substrate binding domain BRN52_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_13925 PF02525 Flavodoxin-like fold BRN52_13930 PF01609 Transposase DDE domain BRN52_13930 PF05598 Transposase domain (DUF772) BRN52_13945 PF02403 Seryl-tRNA synthetase N-terminal domain BRN52_13945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRN52_13950 PF03544 Gram-negative bacterial TonB protein C-terminal BRN52_14005 PF00561 alpha/beta hydrolase fold BRN52_14010 PF00313 'Cold-shock' DNA-binding domain BRN52_14060 PF05598 Transposase domain (DUF772) BRN52_14060 PF01609 Transposase DDE domain BRN52_14075 PF00588 SpoU rRNA Methylase family BRN52_14075 PF08032 RNA 2'-O ribose methyltransferase substrate binding BRN52_14090 PF00773 RNB domain BRN52_14090 PF08206 Ribonuclease B OB domain BRN52_14090 PF17876 Cold shock domain BRN52_14090 PF00575 S1 RNA binding domain BRN52_14090 PF08461 Ribonuclease R winged-helix domain BRN52_14120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_14120 PF02770 Acyl-CoA dehydrogenase, middle domain BRN52_14120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_14125 PF01209 ubiE/COQ5 methyltransferase family BRN52_14130 PF02574 Homocysteine S-methyltransferase BRN52_14130 PF00809 Pterin binding enzyme BRN52_14135 PF00809 Pterin binding enzyme BRN52_14135 PF02310 B12 binding domain BRN52_14135 PF02607 B12 binding domain BRN52_14135 PF02574 Homocysteine S-methyltransferase BRN52_14135 PF02965 Vitamin B12 dependent methionine synthase, activation domain BRN52_14145 PF00294 pfkB family carbohydrate kinase BRN52_14150 PF07690 Major Facilitator Superfamily BRN52_14170 PF04102 SlyX BRN52_14175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BRN52_14175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BRN52_14175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BRN52_14180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BRN52_14180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRN52_14185 PF00255 Glutathione peroxidase BRN52_14195 PF00392 Bacterial regulatory proteins, gntR family BRN52_14200 PF00005 ABC transporter BRN52_14230 PF00206 Lyase BRN52_14230 PF10415 Fumarase C C-terminus BRN52_14270 PF00206 Lyase BRN52_14270 PF08328 Adenylosuccinate lyase C-terminal BRN52_14295 PF08007 Cupin superfamily protein BRN52_14305 PF16078 2-oxoglutarate dehydrogenase N-terminus BRN52_14305 PF00676 Dehydrogenase E1 component BRN52_14305 PF16870 2-oxoglutarate dehydrogenase C-terminal BRN52_14305 PF02779 Transketolase, pyrimidine binding domain BRN52_14310 PF00364 Biotin-requiring enzyme BRN52_14310 PF02817 e3 binding domain BRN52_14310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRN52_14315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRN52_14315 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_14320 PF03641 Possible lysine decarboxylase BRN52_14325 PF01205 Uncharacterized protein family UPF0029 BRN52_14330 PF00005 ABC transporter BRN52_14330 PF00664 ABC transporter transmembrane region BRN52_14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_14345 PF03466 LysR substrate binding domain BRN52_14365 PF02153 Prephenate dehydrogenase BRN52_14365 PF01817 Chorismate mutase type II BRN52_14370 PF08543 Phosphomethylpyrimidine kinase BRN52_14380 PF00226 DnaJ domain BRN52_14380 PF00684 DnaJ central domain BRN52_14380 PF01556 DnaJ C terminal domain BRN52_14385 PF00012 Hsp70 protein BRN52_14390 PF01025 GrpE BRN52_14395 PF01628 HrcA protein C terminal domain BRN52_14395 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BRN52_14400 PF02463 RecF/RecN/SMC N terminal domain BRN52_14405 PF01475 Ferric uptake regulator family BRN52_14410 PF04355 SmpA / OmlA family BRN52_14420 PF03658 RnfH family Ubiquitin BRN52_14425 PF03364 Polyketide cyclase / dehydrase and lipid transport BRN52_14430 PF01668 SmpB protein BRN52_14445 PF12806 Acetyl-CoA dehydrogenase C-terminal like BRN52_14445 PF02770 Acyl-CoA dehydrogenase, middle domain BRN52_14445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_14445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_14455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BRN52_14455 PF02779 Transketolase, pyrimidine binding domain BRN52_14455 PF02780 Transketolase, C-terminal domain BRN52_14500 PF07690 Major Facilitator Superfamily BRN52_14505 PF00529 HlyD membrane-fusion protein of T1SS BRN52_14505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_14510 PF02321 Outer membrane efflux protein BRN52_14520 PF12833 Helix-turn-helix domain BRN52_14525 PF03989 DNA gyrase C-terminal domain, beta-propeller BRN52_14525 PF00521 DNA gyrase/topoisomerase IV, subunit A BRN52_14535 PF00210 Ferritin-like domain BRN52_14540 PF01804 Penicillin amidase BRN52_14555 PF07715 TonB-dependent Receptor Plug Domain BRN52_14555 PF00593 TonB dependent receptor BRN52_14570 PF13537 Glutamine amidotransferase domain BRN52_14570 PF00733 Asparagine synthase BRN52_14575 PF07687 Peptidase dimerisation domain BRN52_14575 PF01546 Peptidase family M20/M25/M40 BRN52_14585 PF03960 ArsC family BRN52_14595 PF00132 Bacterial transferase hexapeptide (six repeats) BRN52_14595 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BRN52_14595 PF14602 Hexapeptide repeat of succinyl-transferase BRN52_14600 PF01909 Nucleotidyltransferase domain BRN52_14600 PF01966 HD domain BRN52_14600 PF08335 GlnD PII-uridylyltransferase BRN52_14605 PF00557 Metallopeptidase family M24 BRN52_14640 PF00318 Ribosomal protein S2 BRN52_14645 PF00889 Elongation factor TS BRN52_14655 PF00696 Amino acid kinase family BRN52_14660 PF01765 Ribosome recycling factor BRN52_14665 PF01255 Putative undecaprenyl diphosphate synthase BRN52_14675 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BRN52_14675 PF13288 DXP reductoisomerase C-terminal domain BRN52_14675 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BRN52_14680 PF02163 Peptidase family M50 BRN52_14680 PF17820 PDZ domain BRN52_14685 PF07244 Surface antigen variable number repeat BRN52_14685 PF01103 Surface antigen BRN52_14690 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BRN52_14690 PF00132 Bacterial transferase hexapeptide (six repeats) BRN52_14695 PF07977 FabA-like domain BRN52_14700 PF00132 Bacterial transferase hexapeptide (six repeats) BRN52_14700 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BRN52_14705 PF02684 Lipid-A-disaccharide synthetase BRN52_14710 PF01351 Ribonuclease HII BRN52_14715 PF07733 Bacterial DNA polymerase III alpha NTPase domain BRN52_14715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BRN52_14715 PF01336 OB-fold nucleic acid binding domain BRN52_14715 PF02811 PHP domain BRN52_14715 PF14579 Helix-hairpin-helix motif BRN52_14720 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BRN52_14730 PF07715 TonB-dependent Receptor Plug Domain BRN52_14730 PF00593 TonB dependent receptor BRN52_14735 PF00005 ABC transporter BRN52_14735 PF13732 Domain of unknown function (DUF4162) BRN52_14755 PF05598 Transposase domain (DUF772) BRN52_14760 PF05598 Transposase domain (DUF772) BRN52_14815 PF00009 Elongation factor Tu GTP binding domain BRN52_14835 PF05598 Transposase domain (DUF772) BRN52_14850 PF02592 Putative vitamin uptake transporter BRN52_14870 PF02574 Homocysteine S-methyltransferase BRN52_14875 PF00324 Amino acid permease BRN52_14895 PF09334 tRNA synthetases class I (M) BRN52_14895 PF01588 Putative tRNA binding domain BRN52_14905 PF04060 Putative Fe-S cluster BRN52_14925 PF04545 Sigma-70, region 4 BRN52_14925 PF04542 Sigma-70 region 2 BRN52_14970 PF01042 Endoribonuclease L-PSP BRN52_14980 PF03706 Lysylphosphatidylglycerol synthase TM region BRN52_14980 PF09924 Uncharacterised conserved protein (DUF2156) BRN52_15025 PF07690 Major Facilitator Superfamily BRN52_15030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRN52_15045 PF08274 PhnA Zinc-Ribbon BRN52_15045 PF03831 PhnA domain BRN52_15060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BRN52_15100 PF01609 Transposase DDE domain BRN52_15100 PF05598 Transposase domain (DUF772) BRN52_15105 PF01258 Prokaryotic dksA/traR C4-type zinc finger BRN52_15115 PF07043 Protein of unknown function (DUF1328) BRN52_15120 PF01863 Protein of unknown function DUF45 BRN52_15135 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BRN52_15135 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BRN52_15140 PF00082 Subtilase family BRN52_15140 PF12951 Passenger-associated-transport-repeat BRN52_15140 PF03797 Autotransporter beta-domain BRN52_15145 PF00108 Thiolase, N-terminal domain BRN52_15145 PF02803 Thiolase, C-terminal domain BRN52_15160 PF00072 Response regulator receiver domain BRN52_15160 PF00990 Diguanylate cyclase, GGDEF domain BRN52_15175 PF04679 ATP dependent DNA ligase C terminal region BRN52_15175 PF01068 ATP dependent DNA ligase domain BRN52_15175 PF04675 DNA ligase N terminus BRN52_15185 PF04679 ATP dependent DNA ligase C terminal region BRN52_15185 PF01068 ATP dependent DNA ligase domain BRN52_15185 PF04675 DNA ligase N terminus BRN52_15190 PF00271 Helicase conserved C-terminal domain BRN52_15190 PF08494 DEAD/H associated BRN52_15190 PF00270 DEAD/DEAH box helicase BRN52_15210 PF00313 'Cold-shock' DNA-binding domain BRN52_15215 PF01048 Phosphorylase superfamily BRN52_15225 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_15230 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BRN52_15235 PF01593 Flavin containing amine oxidoreductase BRN52_15240 PF01323 DSBA-like thioredoxin domain BRN52_15260 PF05598 Transposase domain (DUF772) BRN52_15275 PF05958 tRNA (Uracil-5-)-methyltransferase BRN52_15285 PF11967 Recombination protein O N terminal BRN52_15285 PF02565 Recombination protein O C terminal BRN52_15290 PF01926 50S ribosome-binding GTPase BRN52_15290 PF07650 KH domain BRN52_15295 PF14622 Ribonuclease-III-like BRN52_15295 PF00035 Double-stranded RNA binding motif BRN52_15305 PF10502 Signal peptidase, peptidase S26 BRN52_15310 PF00679 Elongation factor G C-terminus BRN52_15310 PF06421 GTP-binding protein LepA C-terminus BRN52_15310 PF03144 Elongation factor Tu domain 2 BRN52_15310 PF00009 Elongation factor Tu GTP binding domain BRN52_15315 PF13180 PDZ domain BRN52_15325 PF08281 Sigma-70, region 4 BRN52_15325 PF04542 Sigma-70 region 2 BRN52_15330 PF00378 Enoyl-CoA hydratase/isomerase BRN52_15330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRN52_15330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRN52_15335 PF01545 Cation efflux family BRN52_15340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BRN52_15340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BRN52_15345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BRN52_15345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BRN52_15345 PF00378 Enoyl-CoA hydratase/isomerase BRN52_15350 PF00378 Enoyl-CoA hydratase/isomerase BRN52_15355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_15355 PF02770 Acyl-CoA dehydrogenase, middle domain BRN52_15355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_15360 PF00171 Aldehyde dehydrogenase family BRN52_15365 PF09856 Predicted transcriptional regulator (DUF2083) BRN52_15365 PF06114 IrrE N-terminal-like domain BRN52_15365 PF01381 Helix-turn-helix BRN52_15415 PF00072 Response regulator receiver domain BRN52_15415 PF01627 Hpt domain BRN52_15415 PF00512 His Kinase A (phospho-acceptor) domain BRN52_15415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_15415 PF17149 Periplasmic sensor domain found in signal transduction proteins BRN52_15415 PF00672 HAMP domain BRN52_15420 PF17149 Periplasmic sensor domain found in signal transduction proteins BRN52_15420 PF00072 Response regulator receiver domain BRN52_15420 PF01627 Hpt domain BRN52_15420 PF00512 His Kinase A (phospho-acceptor) domain BRN52_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_15420 PF00672 HAMP domain BRN52_15425 PF00072 Response regulator receiver domain BRN52_15425 PF01627 Hpt domain BRN52_15425 PF00512 His Kinase A (phospho-acceptor) domain BRN52_15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_15425 PF00672 HAMP domain BRN52_15425 PF17149 Periplasmic sensor domain found in signal transduction proteins BRN52_15430 PF04264 YceI-like domain BRN52_15440 PF04264 YceI-like domain BRN52_15455 PF03315 Serine dehydratase beta chain BRN52_15455 PF03313 Serine dehydratase alpha chain BRN52_15465 PF01053 Cys/Met metabolism PLP-dependent enzyme BRN52_15470 PF00561 alpha/beta hydrolase fold BRN52_15475 PF01476 LysM domain BRN52_15475 PF01551 Peptidase family M23 BRN52_15475 PF08525 Opacity-associated protein A N-terminal motif BRN52_15480 PF00009 Elongation factor Tu GTP binding domain BRN52_15480 PF16658 Class II release factor RF3, C-terminal domain BRN52_15485 PF03006 Haemolysin-III related BRN52_15500 PF05598 Transposase domain (DUF772) BRN52_15515 PF00535 Glycosyl transferase family 2 BRN52_15520 PF00912 Transglycosylase BRN52_15525 PF01430 Hsp33 protein BRN52_15535 PF07715 TonB-dependent Receptor Plug Domain BRN52_15535 PF00593 TonB dependent receptor BRN52_15540 PF00440 Bacterial regulatory proteins, tetR family BRN52_15545 PF00561 alpha/beta hydrolase fold BRN52_15550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_15550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_15550 PF09317 Domain of unknown function (DUF1974) BRN52_15585 PF01597 Glycine cleavage H-protein BRN52_15590 PF08669 Glycine cleavage T-protein C-terminal barrel domain BRN52_15590 PF01571 Aminomethyltransferase folate-binding domain BRN52_15600 PF01145 SPFH domain / Band 7 family BRN52_15600 PF16200 C-terminal region of band_7 BRN52_15615 PF03819 MazG nucleotide pyrophosphohydrolase domain BRN52_15620 PF00459 Inositol monophosphatase family BRN52_15625 PF00293 NUDIX domain BRN52_15630 PF00202 Aminotransferase class-III BRN52_15635 PF04452 RNA methyltransferase BRN52_15640 PF02685 Glucokinase BRN52_15655 PF00704 Glycosyl hydrolases family 18 BRN52_15655 PF01476 LysM domain BRN52_15675 PF07691 PA14 domain BRN52_15675 PF01915 Glycosyl hydrolase family 3 C-terminal domain BRN52_15675 PF00933 Glycosyl hydrolase family 3 N terminal domain BRN52_15675 PF14310 Fibronectin type III-like domain BRN52_15680 PF00664 ABC transporter transmembrane region BRN52_15680 PF00005 ABC transporter BRN52_15680 PF03412 Peptidase C39 family BRN52_15740 PF17678 Glycosyl hydrolase family 92 N-terminal domain BRN52_15740 PF07971 Glycosyl hydrolase family 92 BRN52_15750 PF01301 Glycosyl hydrolases family 35 BRN52_15790 PF03932 CutC family BRN52_15795 PF01112 Asparaginase BRN52_15835 PF13302 Acetyltransferase (GNAT) domain BRN52_15850 PF01627 Hpt domain BRN52_15850 PF00072 Response regulator receiver domain BRN52_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_15850 PF01584 CheW-like domain BRN52_15855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_15855 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BRN52_15860 PF01584 CheW-like domain BRN52_15865 PF00072 Response regulator receiver domain BRN52_15870 PF00072 Response regulator receiver domain BRN52_15875 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BRN52_15875 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BRN52_15885 PF03747 ADP-ribosylglycohydrolase BRN52_15890 PF00814 Glycoprotease family BRN52_15895 PF13307 Helicase C-terminal domain BRN52_15895 PF04851 Type III restriction enzyme, res subunit BRN52_15905 PF00912 Transglycosylase BRN52_15905 PF00905 Penicillin binding protein transpeptidase domain BRN52_15905 PF14814 Bifunctional transglycosylase second domain BRN52_15910 PF00535 Glycosyl transferase family 2 BRN52_15920 PF04607 Region found in RelA / SpoT proteins BRN52_15920 PF02824 TGS domain BRN52_15920 PF13291 ACT domain BRN52_15925 PF08042 PqqA family BRN52_15930 PF12706 Beta-lactamase superfamily domain BRN52_15935 PF03070 TENA/THI-4/PQQC family BRN52_15940 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BRN52_15945 PF13186 Iron-sulfur cluster-binding domain BRN52_15945 PF04055 Radical SAM superfamily BRN52_15970 PF04408 Helicase associated domain (HA2) BRN52_15970 PF00270 DEAD/DEAH box helicase BRN52_15970 PF00271 Helicase conserved C-terminal domain BRN52_15970 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BRN52_15970 PF11898 Domain of unknown function (DUF3418) BRN52_15975 PF00210 Ferritin-like domain BRN52_15985 PF09382 RQC domain BRN52_15985 PF16124 RecQ zinc-binding BRN52_15985 PF00570 HRDC domain BRN52_15985 PF00271 Helicase conserved C-terminal domain BRN52_15985 PF00270 DEAD/DEAH box helicase BRN52_16010 PF06508 Queuosine biosynthesis protein QueC BRN52_16020 PF05598 Transposase domain (DUF772) BRN52_16035 PF04055 Radical SAM superfamily BRN52_16045 PF00691 OmpA family BRN52_16050 PF07676 WD40-like Beta Propeller Repeat BRN52_16050 PF04052 TolB amino-terminal domain BRN52_16060 PF02472 Biopolymer transport protein ExbD/TolR BRN52_16065 PF01618 MotA/TolQ/ExbB proton channel family BRN52_16070 PF03061 Thioesterase superfamily BRN52_16075 PF05491 RuvB C-terminal winged helix domain BRN52_16075 PF17864 RuvB AAA lid domain BRN52_16075 PF05496 Holliday junction DNA helicase RuvB P-loop domain BRN52_16080 PF02705 K+ potassium transporter BRN52_16085 PF01330 RuvA N terminal domain BRN52_16085 PF07499 RuvA, C-terminal domain BRN52_16090 PF02075 Crossover junction endodeoxyribonuclease RuvC BRN52_16095 PF01709 Transcriptional regulator BRN52_16110 PF00152 tRNA synthetases class II (D, K and N) BRN52_16110 PF02938 GAD domain BRN52_16110 PF01336 OB-fold nucleic acid binding domain BRN52_16150 PF18073 Rubredoxin metal binding domain BRN52_16185 PF01624 MutS domain I BRN52_16185 PF05188 MutS domain II BRN52_16185 PF05192 MutS domain III BRN52_16185 PF05190 MutS family domain IV BRN52_16185 PF00488 MutS domain V BRN52_16220 PF01609 Transposase DDE domain BRN52_16220 PF05598 Transposase domain (DUF772) BRN52_16225 PF14220 Domain of unknown function (DUF4329) BRN52_16225 PF05593 RHS Repeat BRN52_16225 PF03527 RHS protein BRN52_16230 PF01609 Transposase DDE domain BRN52_16230 PF05598 Transposase domain (DUF772) BRN52_16250 PF05598 Transposase domain (DUF772) BRN52_16250 PF01609 Transposase DDE domain BRN52_16305 PF05593 RHS Repeat BRN52_16305 PF03527 RHS protein BRN52_16315 PF04717 Type VI secretion system, phage-baseplate injector BRN52_16325 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BRN52_16330 PF00510 Cytochrome c oxidase subunit III BRN52_16335 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRN52_16340 PF06481 COX Aromatic Rich Motif BRN52_16340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRN52_16350 PF02401 LytB protein BRN52_16355 PF01252 Signal peptidase (SPase) II BRN52_16360 PF08264 Anticodon-binding domain of tRNA BRN52_16360 PF06827 Zinc finger found in FPG and IleRS BRN52_16360 PF00133 tRNA synthetases class I (I, L, M and V) BRN52_16365 PF01687 Riboflavin kinase BRN52_16365 PF06574 FAD synthetase BRN52_16370 PF03023 Lipid II flippase MurJ BRN52_16375 PF01649 Ribosomal protein S20 BRN52_16380 PF01926 50S ribosome-binding GTPase BRN52_16380 PF01018 GTP1/OBG BRN52_16385 PF01016 Ribosomal L27 protein BRN52_16390 PF00829 Ribosomal prokaryotic L21 protein BRN52_16395 PF17760 UvrA interaction domain BRN52_16395 PF00005 ABC transporter BRN52_16395 PF17755 UvrA DNA-binding domain BRN52_16410 PF00378 Enoyl-CoA hydratase/isomerase BRN52_16425 PF08281 Sigma-70, region 4 BRN52_16425 PF04542 Sigma-70 region 2 BRN52_16440 PF04376 Arginine-tRNA-protein transferase, N terminus BRN52_16440 PF04377 Arginine-tRNA-protein transferase, C terminus BRN52_16470 PF00593 TonB dependent receptor BRN52_16470 PF07715 TonB-dependent Receptor Plug Domain BRN52_16480 PF02358 Trehalose-phosphatase BRN52_16485 PF00723 Glycosyl hydrolases family 15 BRN52_16490 PF00982 Glycosyltransferase family 20 BRN52_16510 PF00849 RNA pseudouridylate synthase BRN52_16515 PF13525 Outer membrane lipoprotein BRN52_16520 PF00795 Carbon-nitrogen hydrolase BRN52_16520 PF02540 NAD synthase BRN52_16530 PF02629 CoA binding domain BRN52_16530 PF00549 CoA-ligase BRN52_16535 PF08442 ATP-grasp domain BRN52_16535 PF00549 CoA-ligase BRN52_16540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_16540 PF00512 His Kinase A (phospho-acceptor) domain BRN52_16545 PF00158 Sigma-54 interaction domain BRN52_16545 PF00072 Response regulator receiver domain BRN52_16545 PF02954 Bacterial regulatory protein, Fis family BRN52_16560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRN52_16560 PF00437 Type II/IV secretion system protein BRN52_16575 PF00884 Sulfatase BRN52_16575 PF08019 Phosphoethanolamine transferase EptA/EptB BRN52_16580 PF07963 Prokaryotic N-terminal methylation motif BRN52_16580 PF00114 Pilin (bacterial filament) BRN52_16585 PF00482 Type II secretion system (T2SS), protein F BRN52_16590 PF01478 Type IV leader peptidase family BRN52_16590 PF06750 Bacterial Peptidase A24 N-terminal domain BRN52_16595 PF01121 Dephospho-CoA kinase BRN52_16625 PF05598 Transposase domain (DUF772) BRN52_16625 PF01609 Transposase DDE domain BRN52_16655 PF00005 ABC transporter BRN52_16655 PF00664 ABC transporter transmembrane region BRN52_16665 PF00873 AcrB/AcrD/AcrF family BRN52_16680 PF02321 Outer membrane efflux protein BRN52_16685 PF00072 Response regulator receiver domain BRN52_16685 PF00486 Transcriptional regulatory protein, C terminal BRN52_16690 PF00672 HAMP domain BRN52_16690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_16690 PF00512 His Kinase A (phospho-acceptor) domain BRN52_16695 PF00999 Sodium/hydrogen exchanger family BRN52_16700 PF00144 Beta-lactamase BRN52_16705 PF03737 Aldolase/RraA BRN52_16730 PF01479 S4 domain BRN52_16730 PF00849 RNA pseudouridylate synthase BRN52_16735 PF00563 EAL domain BRN52_16735 PF08448 PAS fold BRN52_16735 PF00990 Diguanylate cyclase, GGDEF domain BRN52_16740 PF00271 Helicase conserved C-terminal domain BRN52_16740 PF00270 DEAD/DEAH box helicase BRN52_16740 PF03880 DbpA RNA binding domain BRN52_16790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BRN52_16790 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BRN52_16800 PF00654 Voltage gated chloride channel BRN52_16805 PF00107 Zinc-binding dehydrogenase BRN52_16805 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_16840 PF05736 OprF membrane domain BRN52_16840 PF00691 OmpA family BRN52_16855 PF00875 DNA photolyase BRN52_16855 PF03441 FAD binding domain of DNA photolyase BRN52_16860 PF03796 DnaB-like helicase C terminal domain BRN52_16860 PF00772 DnaB-like helicase N terminal domain BRN52_16865 PF03358 NADPH-dependent FMN reductase BRN52_16870 PF00733 Asparagine synthase BRN52_16870 PF13537 Glutamine amidotransferase domain BRN52_16875 PF13417 Glutathione S-transferase, N-terminal domain BRN52_16885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BRN52_16885 PF02770 Acyl-CoA dehydrogenase, middle domain BRN52_16885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BRN52_16900 PF01026 TatD related DNase BRN52_16905 PF00899 ThiF family BRN52_16920 PF00313 'Cold-shock' DNA-binding domain BRN52_16965 PF01475 Ferric uptake regulator family BRN52_16970 PF00749 tRNA synthetases class I (E and Q), catalytic domain BRN52_17000 PF05598 Transposase domain (DUF772) BRN52_17000 PF01609 Transposase DDE domain BRN52_17035 PF01609 Transposase DDE domain BRN52_17035 PF05598 Transposase domain (DUF772) BRN52_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_17065 PF00512 His Kinase A (phospho-acceptor) domain BRN52_17065 PF00672 HAMP domain BRN52_17075 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BRN52_17085 PF00271 Helicase conserved C-terminal domain BRN52_17085 PF03461 TRCF domain BRN52_17085 PF17757 UvrB interaction domain BRN52_17085 PF00270 DEAD/DEAH box helicase BRN52_17085 PF02559 CarD-like/TRCF domain BRN52_17095 PF01584 CheW-like domain BRN52_17095 PF09078 CheY binding BRN52_17095 PF02895 Signal transducing histidine kinase, homodimeric domain BRN52_17095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_17095 PF01627 Hpt domain BRN52_17105 PF02203 Tar ligand binding domain homologue BRN52_17105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BRN52_17105 PF00672 HAMP domain BRN52_17110 PF01584 CheW-like domain BRN52_17115 PF13426 PAS domain BRN52_17115 PF00990 Diguanylate cyclase, GGDEF domain BRN52_17115 PF00563 EAL domain BRN52_17120 PF01739 CheR methyltransferase, SAM binding domain BRN52_17120 PF03705 CheR methyltransferase, all-alpha domain BRN52_17125 PF00072 Response regulator receiver domain BRN52_17125 PF01339 CheB methylesterase BRN52_17135 PF01431 Peptidase family M13 BRN52_17135 PF05649 Peptidase family M13 BRN52_17150 PF00300 Histidine phosphatase superfamily (branch 1) BRN52_17155 PF04493 Endonuclease V BRN52_17165 PF05726 Pirin C-terminal cupin domain BRN52_17165 PF02678 Pirin BRN52_17220 PF04717 Type VI secretion system, phage-baseplate injector BRN52_17240 PF05598 Transposase domain (DUF772) BRN52_17240 PF01609 Transposase DDE domain BRN52_17265 PF04717 Type VI secretion system, phage-baseplate injector BRN52_17285 PF04717 Type VI secretion system, phage-baseplate injector BRN52_17295 PF02678 Pirin BRN52_17295 PF05726 Pirin C-terminal cupin domain BRN52_17300 PF13722 5TM C-terminal transporter carbon starvation CstA BRN52_17300 PF02554 Carbon starvation protein CstA BRN52_17305 PF04328 Selenoprotein, putative BRN52_17345 PF00563 EAL domain BRN52_17345 PF01590 GAF domain BRN52_17345 PF00990 Diguanylate cyclase, GGDEF domain BRN52_17345 PF00360 Phytochrome region BRN52_17350 PF00436 Single-strand binding protein family BRN52_17355 PF00348 Polyprenyl synthetase BRN52_17370 PF08245 Mur ligase middle domain BRN52_17385 PF00696 Amino acid kinase family BRN52_17385 PF01842 ACT domain BRN52_17395 PF02567 Phenazine biosynthesis-like protein BRN52_17410 PF02566 OsmC-like protein BRN52_17420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BRN52_17420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BRN52_17425 PF03652 Holliday junction resolvase BRN52_17430 PF02622 Uncharacterized ACR, COG1678 BRN52_17440 PF13673 Acetyltransferase (GNAT) domain BRN52_17440 PF13302 Acetyltransferase (GNAT) domain BRN52_17440 PF00117 Glutamine amidotransferase class-I BRN52_17440 PF03352 Methyladenine glycosylase BRN52_17440 PF00958 GMP synthase C terminal domain BRN52_17455 PF00437 Type II/IV secretion system protein BRN52_17460 PF00437 Type II/IV secretion system protein BRN52_17465 PF01168 Alanine racemase, N-terminal domain BRN52_17470 PF03807 NADP oxidoreductase coenzyme F420-dependent BRN52_17470 PF14748 Pyrroline-5-carboxylate reductase dimerisation BRN52_17510 PF01965 DJ-1/PfpI family BRN52_17530 PF02082 Transcriptional regulator BRN52_17535 PF01458 Uncharacterized protein family (UPF0051) BRN52_17540 PF00005 ABC transporter BRN52_17545 PF01458 Uncharacterized protein family (UPF0051) BRN52_17550 PF00266 Aminotransferase class-V BRN52_17560 PF00355 Rieske [2Fe-2S] domain BRN52_17595 PF01053 Cys/Met metabolism PLP-dependent enzyme BRN52_17605 PF07722 Peptidase C26 BRN52_17610 PF01810 LysE type translocator BRN52_17615 PF04204 Homoserine O-succinyltransferase BRN52_17620 PF00120 Glutamine synthetase, catalytic domain BRN52_17625 PF00872 Transposase, Mutator family BRN52_17665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_17665 PF00183 Hsp90 protein BRN52_17670 PF12833 Helix-turn-helix domain BRN52_17690 PF13472 GDSL-like Lipase/Acylhydrolase family BRN52_17690 PF07859 alpha/beta hydrolase fold BRN52_17700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_17700 PF03466 LysR substrate binding domain BRN52_17715 PF00005 ABC transporter BRN52_17715 PF12848 ABC transporter BRN52_17745 PF00593 TonB dependent receptor BRN52_17745 PF07715 TonB-dependent Receptor Plug Domain BRN52_17750 PF07715 TonB-dependent Receptor Plug Domain BRN52_17750 PF00593 TonB dependent receptor BRN52_17760 PF00999 Sodium/hydrogen exchanger family BRN52_17760 PF02254 TrkA-N domain BRN52_17775 PF00593 TonB dependent receptor BRN52_17775 PF07660 Secretin and TonB N terminus short domain BRN52_17775 PF07715 TonB-dependent Receptor Plug Domain BRN52_17785 PF06276 Ferric iron reductase FhuF-like transporter BRN52_17785 PF04183 IucA / IucC family BRN52_17790 PF07690 Major Facilitator Superfamily BRN52_17800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BRN52_17800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BRN52_17810 PF02654 Cobalamin-5-phosphate synthase BRN52_17820 PF02277 Phosphoribosyltransferase BRN52_17825 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BRN52_17835 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BRN52_17835 PF12557 Cob(I)alamin adenosyltransferase N terminal BRN52_17860 PF07715 TonB-dependent Receptor Plug Domain BRN52_17860 PF00593 TonB dependent receptor BRN52_17900 PF07724 AAA domain (Cdc48 subfamily) BRN52_17900 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_17900 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_17900 PF02861 Clp amino terminal domain, pathogenicity island component BRN52_17900 PF17871 AAA lid domain BRN52_17905 PF01541 GIY-YIG catalytic domain BRN52_17945 PF01479 S4 domain BRN52_17950 PF01554 MatE BRN52_17960 PF01245 Ribosomal protein L19 BRN52_17965 PF01746 tRNA (Guanine-1)-methyltransferase BRN52_17970 PF01782 RimM N-terminal domain BRN52_17970 PF05239 PRC-barrel domain BRN52_17975 PF00886 Ribosomal protein S16 BRN52_17985 PF03060 Nitronate monooxygenase BRN52_18000 PF00448 SRP54-type protein, GTPase domain BRN52_18000 PF02978 Signal peptide binding domain BRN52_18000 PF02881 SRP54-type protein, helical bundle domain BRN52_18015 PF01578 Cytochrome C assembly protein BRN52_18020 PF01263 Aldose 1-epimerase BRN52_18025 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BRN52_18070 PF07687 Peptidase dimerisation domain BRN52_18070 PF01546 Peptidase family M20/M25/M40 BRN52_18085 PF01636 Phosphotransferase enzyme family BRN52_18090 PF00483 Nucleotidyl transferase BRN52_18095 PF00308 Bacterial dnaA protein BRN52_18100 PF01594 AI-2E family transporter BRN52_18110 PF00586 AIR synthase related protein, N-terminal domain BRN52_18110 PF02769 AIR synthase related protein, C-terminal domain BRN52_18125 PF00551 Formyl transferase BRN52_18145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BRN52_18155 PF01722 BolA-like protein BRN52_18160 PF00571 CBS domain BRN52_18160 PF01380 SIS domain BRN52_18175 PF03968 OstA-like protein BRN52_18180 PF00005 ABC transporter BRN52_18185 PF04552 Sigma-54, DNA binding domain BRN52_18185 PF04963 Sigma-54 factor, core binding domain BRN52_18185 PF00309 Sigma-54 factor, Activator interacting domain (AID) BRN52_18190 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BRN52_18195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BRN52_18200 PF07475 HPr Serine kinase C-terminal domain BRN52_18200 PF02603 HPr Serine kinase N terminus BRN52_18205 PF03668 P-loop ATPase protein family BRN52_18215 PF00381 PTS HPr component phosphorylation site BRN52_18220 PF02896 PEP-utilising enzyme, TIM barrel domain BRN52_18220 PF00391 PEP-utilising enzyme, mobile domain BRN52_18220 PF05524 PEP-utilising enzyme, N-terminal BRN52_18230 PF01769 Divalent cation transporter BRN52_18230 PF00571 CBS domain BRN52_18230 PF03448 MgtE intracellular N domain BRN52_18235 PF00756 Putative esterase BRN52_18240 PF02322 Cytochrome bd terminal oxidase subunit II BRN52_18245 PF01654 Cytochrome bd terminal oxidase subunit I BRN52_18265 PF00324 Amino acid permease BRN52_18275 PF00561 alpha/beta hydrolase fold BRN52_18280 PF00196 Bacterial regulatory proteins, luxR family BRN52_18285 PF00324 Amino acid permease BRN52_18305 PF12706 Beta-lactamase superfamily domain BRN52_18340 PF00376 MerR family regulatory protein BRN52_18340 PF09278 MerR, DNA binding BRN52_18355 PF03738 Glutathionylspermidine synthase preATP-grasp BRN52_18380 PF04012 PspA/IM30 family BRN52_18390 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BRN52_18390 PF01243 Pyridoxamine 5'-phosphate oxidase BRN52_18395 PF01202 Shikimate kinase BRN52_18400 PF01761 3-dehydroquinate synthase BRN52_18410 PF01208 Uroporphyrinogen decarboxylase (URO-D) BRN52_18430 PF03377 TAL effector repeat BRN52_18445 PF03377 TAL effector repeat BRN52_18465 PF03377 TAL effector repeat BRN52_18480 PF03377 TAL effector repeat BRN52_18495 PF03377 TAL effector repeat BRN52_18505 PF13276 HTH-like domain BRN52_18505 PF13333 Integrase core domain BRN52_18505 PF00665 Integrase core domain BRN52_18525 PF00202 Aminotransferase class-III BRN52_18535 PF00127 Copper binding proteins, plastocyanin/azurin family BRN52_18550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BRN52_18550 PF00034 Cytochrome c BRN52_18555 PF01593 Flavin containing amine oxidoreductase BRN52_18570 PF00202 Aminotransferase class-III BRN52_18575 PF00027 Cyclic nucleotide-binding domain BRN52_18575 PF00520 Ion transport protein BRN52_18600 PF01609 Transposase DDE domain BRN52_18600 PF05598 Transposase domain (DUF772) BRN52_18605 PF08443 RimK-like ATP-grasp domain BRN52_18605 PF18030 RimK PreATP-grasp domain BRN52_18620 PF00486 Transcriptional regulatory protein, C terminal BRN52_18620 PF00072 Response regulator receiver domain BRN52_18625 PF00672 HAMP domain BRN52_18625 PF00512 His Kinase A (phospho-acceptor) domain BRN52_18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_18645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BRN52_18645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BRN52_18690 PF04273 Putative phosphatase (DUF442) BRN52_18690 PF00753 Metallo-beta-lactamase superfamily BRN52_18700 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_18705 PF03459 TOBE domain BRN52_18705 PF00005 ABC transporter BRN52_18725 PF08521 Two-component sensor kinase N-terminal BRN52_18725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_18725 PF00512 His Kinase A (phospho-acceptor) domain BRN52_18730 PF00486 Transcriptional regulatory protein, C terminal BRN52_18730 PF00072 Response regulator receiver domain BRN52_18750 PF00501 AMP-binding enzyme BRN52_18775 PF03734 L,D-transpeptidase catalytic domain BRN52_18775 PF01476 LysM domain BRN52_18780 PF01551 Peptidase family M23 BRN52_18780 PF04225 Opacity-associated protein A LysM-like domain BRN52_18790 PF02779 Transketolase, pyrimidine binding domain BRN52_18790 PF00456 Transketolase, thiamine diphosphate binding domain BRN52_18790 PF02780 Transketolase, C-terminal domain BRN52_18795 PF00375 Sodium:dicarboxylate symporter family BRN52_18815 PF00092 von Willebrand factor type A domain BRN52_18815 PF07584 Aerotolerance regulator N-terminal BRN52_18835 PF17863 AAA lid domain BRN52_18835 PF07726 ATPase family associated with various cellular activities (AAA) BRN52_18860 PF03958 Bacterial type II/III secretion system short domain BRN52_18860 PF00263 Bacterial type II and III secretion system protein BRN52_18860 PF07660 Secretin and TonB N terminus short domain BRN52_18860 PF11741 AMIN domain BRN52_18885 PF00912 Transglycosylase BRN52_18885 PF17092 Penicillin-binding protein OB-like domain BRN52_18885 PF00905 Penicillin binding protein transpeptidase domain BRN52_18900 PF00285 Citrate synthase, C-terminal domain BRN52_18905 PF01197 Ribosomal protein L31 BRN52_18910 PF01156 Inosine-uridine preferring nucleoside hydrolase BRN52_18915 PF17191 RecG wedge domain BRN52_18915 PF00271 Helicase conserved C-terminal domain BRN52_18915 PF00270 DEAD/DEAH box helicase BRN52_18920 PF01042 Endoribonuclease L-PSP BRN52_18925 PF13291 ACT domain BRN52_18925 PF02824 TGS domain BRN52_18925 PF04607 Region found in RelA / SpoT proteins BRN52_18930 PF01192 RNA polymerase Rpb6 BRN52_18945 PF00625 Guanylate kinase BRN52_18950 PF03755 YicC-like family, N-terminal region BRN52_18950 PF08340 Domain of unknown function (DUF1732) BRN52_18955 PF03725 3' exoribonuclease family, domain 2 BRN52_18955 PF01138 3' exoribonuclease family, domain 1 BRN52_18965 PF01725 Ham1 family BRN52_18970 PF06969 HemN C-terminal domain BRN52_18970 PF04055 Radical SAM superfamily BRN52_18985 PF00557 Metallopeptidase family M24 BRN52_19000 PF05195 Aminopeptidase P, N-terminal domain BRN52_19000 PF00557 Metallopeptidase family M24 BRN52_19005 PF03695 Uncharacterised protein family (UPF0149) BRN52_19015 PF05164 Cell division protein ZapA BRN52_19025 PF01812 5-formyltetrahydrofolate cyclo-ligase family BRN52_19035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BRN52_19045 PF13369 Transglutaminase-like superfamily BRN52_19050 PF00301 Rubredoxin BRN52_19055 PF02581 Thiamine monophosphate synthase BRN52_19090 PF00390 Malic enzyme, N-terminal domain BRN52_19090 PF03949 Malic enzyme, NAD binding domain BRN52_19090 PF01515 Phosphate acetyl/butaryl transferase BRN52_19095 PF00375 Sodium:dicarboxylate symporter family BRN52_19110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_19110 PF00512 His Kinase A (phospho-acceptor) domain BRN52_19115 PF07690 Major Facilitator Superfamily BRN52_19125 PF03466 LysR substrate binding domain BRN52_19125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_19150 PF00196 Bacterial regulatory proteins, luxR family BRN52_19150 PF00072 Response regulator receiver domain BRN52_19160 PF00512 His Kinase A (phospho-acceptor) domain BRN52_19160 PF08521 Two-component sensor kinase N-terminal BRN52_19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_19165 PF00072 Response regulator receiver domain BRN52_19165 PF00486 Transcriptional regulatory protein, C terminal BRN52_19180 PF03600 Citrate transporter BRN52_19185 PF00106 short chain dehydrogenase BRN52_19190 PF00356 Bacterial regulatory proteins, lacI family BRN52_19210 PF00128 Alpha amylase, catalytic domain BRN52_19225 PF03193 RsgA GTPase BRN52_19250 PF01522 Polysaccharide deacetylase BRN52_19255 PF00462 Glutaredoxin BRN52_19305 PF01327 Polypeptide deformylase BRN52_19310 PF03960 ArsC family BRN52_19325 PF17863 AAA lid domain BRN52_19325 PF07726 ATPase family associated with various cellular activities (AAA) BRN52_19335 PF11992 Domain of unknown function (DUF3488) BRN52_19335 PF13559 Domain of unknown function (DUF4129) BRN52_19335 PF01841 Transglutaminase-like superfamily BRN52_19345 PF01230 HIT domain BRN52_19350 PF02132 RecR protein BRN52_19350 PF13662 Toprim domain BRN52_19355 PF02575 YbaB/EbfC DNA-binding family BRN52_19360 PF12170 DNA polymerase III tau subunit V interacting with alpha BRN52_19360 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BRN52_19360 PF12169 DNA polymerase III subunits gamma and tau domain III BRN52_19375 PF02391 MoaE protein BRN52_19380 PF02597 ThiS family BRN52_19385 PF01967 MoaC family BRN52_19395 PF04055 Radical SAM superfamily BRN52_19395 PF06463 Molybdenum Cofactor Synthesis C BRN52_19400 PF12706 Beta-lactamase superfamily domain BRN52_19400 PF00753 Metallo-beta-lactamase superfamily BRN52_19410 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BRN52_19420 PF13356 Arm DNA-binding domain BRN52_19420 PF00589 Phage integrase family BRN52_19480 PF04717 Type VI secretion system, phage-baseplate injector BRN52_19480 PF16671 Actin cross-linking domain BRN52_19520 PF00929 Exonuclease BRN52_19525 PF00075 RNase H BRN52_19535 PF16123 Hydroxyacylglutathione hydrolase C-terminus BRN52_19535 PF00753 Metallo-beta-lactamase superfamily BRN52_19540 PF05257 CHAP domain BRN52_19540 PF01476 LysM domain BRN52_19565 PF00216 Bacterial DNA-binding protein BRN52_19570 PF00004 ATPase family associated with various cellular activities (AAA) BRN52_19570 PF05362 Lon protease (S16) C-terminal proteolytic domain BRN52_19570 PF02190 ATP-dependent protease La (LON) substrate-binding domain BRN52_19575 PF10431 C-terminal, D2-small domain, of ClpB protein BRN52_19575 PF06689 ClpX C4-type zinc finger BRN52_19575 PF07724 AAA domain (Cdc48 subfamily) BRN52_19580 PF00574 Clp protease BRN52_19585 PF05698 Bacterial trigger factor protein (TF) C-terminus BRN52_19585 PF05697 Bacterial trigger factor protein (TF) BRN52_19640 PF00180 Isocitrate/isopropylmalate dehydrogenase BRN52_19640 PF18324 Hypothetical protein TT1725 BRN52_19660 PF00462 Glutaredoxin BRN52_19665 PF01435 Peptidase family M48 BRN52_19665 PF13181 Tetratricopeptide repeat BRN52_19670 PF00072 Response regulator receiver domain BRN52_19670 PF00486 Transcriptional regulatory protein, C terminal BRN52_19675 PF00989 PAS fold BRN52_19675 PF00512 His Kinase A (phospho-acceptor) domain BRN52_19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_19675 PF11808 Phosphate regulon sensor protein PhoR BRN52_19680 PF13090 Polyphosphate kinase C-terminal domain 2 BRN52_19680 PF13089 Polyphosphate kinase N-terminal domain BRN52_19680 PF17941 Polyphosphate kinase C-terminal domain 1 BRN52_19680 PF02503 Polyphosphate kinase middle domain BRN52_19685 PF02541 Ppx/GppA phosphatase family BRN52_19690 PF13439 Glycosyltransferase Family 4 BRN52_19690 PF00534 Glycosyl transferases group 1 BRN52_19695 PF01569 PAP2 superfamily BRN52_19700 PF00149 Calcineurin-like phosphoesterase BRN52_19720 PF04305 Protein of unknown function (DUF455) BRN52_19725 PF00156 Phosphoribosyl transferase domain BRN52_19740 PF02875 Mur ligase family, glutamate ligase domain BRN52_19740 PF08245 Mur ligase middle domain BRN52_19750 PF00300 Histidine phosphatase superfamily (branch 1) BRN52_19755 PF10459 Peptidase S46 BRN52_19775 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_19775 PF00107 Zinc-binding dehydrogenase BRN52_19785 PF17850 CysA C-terminal regulatory domain BRN52_19785 PF12857 TOBE-like domain BRN52_19785 PF00005 ABC transporter BRN52_19790 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_19795 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_19805 PF00155 Aminotransferase class I and II BRN52_19815 PF00849 RNA pseudouridylate synthase BRN52_19825 PF00691 OmpA family BRN52_19825 PF05736 OprF membrane domain BRN52_19835 PF00107 Zinc-binding dehydrogenase BRN52_19835 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_19840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BRN52_19840 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_19880 PF03009 Glycerophosphoryl diester phosphodiesterase family BRN52_19910 PF01609 Transposase DDE domain BRN52_19910 PF05598 Transposase domain (DUF772) BRN52_19925 PF00043 Glutathione S-transferase, C-terminal domain BRN52_19925 PF02798 Glutathione S-transferase, N-terminal domain BRN52_19930 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BRN52_19930 PF00056 lactate/malate dehydrogenase, NAD binding domain BRN52_19935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BRN52_19960 PF01474 Class-II DAHP synthetase family BRN52_19970 PF02600 Disulfide bond formation protein DsbB BRN52_20100 PF01062 Bestrophin, RFP-TM, chloride channel BRN52_20110 PF01225 Mur ligase family, catalytic domain BRN52_20110 PF02875 Mur ligase family, glutamate ligase domain BRN52_20110 PF08245 Mur ligase middle domain BRN52_20120 PF00365 Phosphofructokinase BRN52_20140 PF03030 Inorganic H+ pyrophosphatase BRN52_20160 PF00719 Inorganic pyrophosphatase BRN52_20180 PF07715 TonB-dependent Receptor Plug Domain BRN52_20180 PF00593 TonB dependent receptor BRN52_20185 PF12833 Helix-turn-helix domain BRN52_20195 PF13667 ThiC-associated domain BRN52_20195 PF01964 Radical SAM ThiC family BRN52_20205 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BRN52_20205 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BRN52_20210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BRN52_20210 PF00205 Thiamine pyrophosphate enzyme, central domain BRN52_20210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BRN52_20220 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_20225 PF08502 LeuA allosteric (dimerisation) domain BRN52_20225 PF00682 HMGL-like BRN52_20230 PF00180 Isocitrate/isopropylmalate dehydrogenase BRN52_20240 PF00694 Aconitase C-terminal domain BRN52_20245 PF00330 Aconitase family (aconitate hydratase) BRN52_20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_20280 PF02321 Outer membrane efflux protein BRN52_20285 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BRN52_20290 PF03279 Bacterial lipid A biosynthesis acyltransferase BRN52_20340 PF01433 Peptidase family M1 domain BRN52_20340 PF11838 ERAP1-like C-terminal domain BRN52_20345 PF00709 Adenylosuccinate synthetase BRN52_20355 PF01145 SPFH domain / Band 7 family BRN52_20360 PF12221 Bacterial membrane protein N terminal BRN52_20360 PF01145 SPFH domain / Band 7 family BRN52_20365 PF00072 Response regulator receiver domain BRN52_20370 PF01556 DnaJ C terminal domain BRN52_20370 PF00226 DnaJ domain BRN52_20380 PF08534 Redoxin BRN52_20430 PF00593 TonB dependent receptor BRN52_20430 PF07715 TonB-dependent Receptor Plug Domain BRN52_20435 PF04303 PrpF protein BRN52_20450 PF00694 Aconitase C-terminal domain BRN52_20450 PF00330 Aconitase family (aconitate hydratase) BRN52_20455 PF00285 Citrate synthase, C-terminal domain BRN52_20465 PF00158 Sigma-54 interaction domain BRN52_20465 PF02954 Bacterial regulatory protein, Fis family BRN52_20465 PF06506 Propionate catabolism activator BRN52_20485 PF09115 DNA polymerase III, delta subunit, C terminal BRN52_20490 PF02618 YceG-like family BRN52_20495 PF00425 chorismate binding enzyme BRN52_20495 PF04715 Anthranilate synthase component I, N terminal region BRN52_20500 PF02801 Beta-ketoacyl synthase, C-terminal domain BRN52_20500 PF00109 Beta-ketoacyl synthase, N-terminal domain BRN52_20505 PF00550 Phosphopantetheine attachment site BRN52_20515 PF00698 Acyl transferase domain BRN52_20525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BRN52_20525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BRN52_20530 PF01783 Ribosomal L32p protein family BRN52_20535 PF02620 Large ribosomal RNA subunit accumulation protein YceD BRN52_20540 PF02545 Maf-like protein BRN52_20560 PF09704 CRISPR-associated protein (Cas_Cas5) BRN52_20580 PF01867 CRISPR associated protein Cas1 BRN52_20585 PF09827 CRISPR associated protein Cas2 BRN52_20625 PF00593 TonB dependent receptor BRN52_20625 PF07715 TonB-dependent Receptor Plug Domain BRN52_20640 PF00392 Bacterial regulatory proteins, gntR family BRN52_20640 PF07702 UTRA domain BRN52_20655 PF00263 Bacterial type II and III secretion system protein BRN52_20655 PF03958 Bacterial type II/III secretion system short domain BRN52_20665 PF10741 Type II secretion system (T2SS), protein M subtype b BRN52_20670 PF05137 Fimbrial assembly protein (PilN) BRN52_20675 PF03934 Type II secretion system (T2SS), protein K BRN52_20685 PF07963 Prokaryotic N-terminal methylation motif BRN52_20690 PF12019 Type II transport protein GspH BRN52_20695 PF08334 Type II secretion system (T2SS), protein G BRN52_20700 PF00482 Type II secretion system (T2SS), protein F BRN52_20710 PF00437 Type II/IV secretion system protein BRN52_20710 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BRN52_20720 PF13018 Extended Signal Peptide of Type V secretion system BRN52_20720 PF05662 Coiled stalk of trimeric autotransporter adhesin BRN52_20720 PF03895 YadA-like membrane anchor domain BRN52_20720 PF05658 Head domain of trimeric autotransporter adhesin BRN52_20730 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BRN52_20730 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BRN52_20730 PF02769 AIR synthase related protein, C-terminal domain BRN52_20735 PF13098 Thioredoxin-like domain BRN52_20735 PF10411 Disulfide bond isomerase protein N-terminus BRN52_20740 PF02899 Phage integrase, N-terminal SAM-like domain BRN52_20740 PF00589 Phage integrase family BRN52_20755 PF03739 Lipopolysaccharide export system permease LptF/LptG BRN52_20765 PF00883 Cytosol aminopeptidase family, catalytic domain BRN52_20765 PF02789 Cytosol aminopeptidase family, N-terminal domain BRN52_20780 PF08264 Anticodon-binding domain of tRNA BRN52_20780 PF00133 tRNA synthetases class I (I, L, M and V) BRN52_20780 PF10458 Valyl tRNA synthetase tRNA binding arm BRN52_20815 PF01609 Transposase DDE domain BRN52_20815 PF05598 Transposase domain (DUF772) BRN52_20830 PF00544 Pectate lyase BRN52_20835 PF01464 Transglycosylase SLT domain BRN52_20835 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BRN52_20850 PF05598 Transposase domain (DUF772) BRN52_20850 PF01609 Transposase DDE domain BRN52_20890 PF01066 CDP-alcohol phosphatidyltransferase BRN52_20900 PF04073 Aminoacyl-tRNA editing domain BRN52_20900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BRN52_20900 PF03129 Anticodon binding domain BRN52_20905 PF00816 H-NS histone family BRN52_20915 PF02405 Permease MlaE BRN52_20920 PF00005 ABC transporter BRN52_20925 PF03886 ABC-type transport auxiliary lipoprotein component BRN52_20925 PF02470 MlaD protein BRN52_20950 PF14307 Glycosyltransferase WbsX BRN52_20950 PF05045 Rhamnan synthesis protein F BRN52_20955 PF01144 Coenzyme A transferase BRN52_20960 PF01144 Coenzyme A transferase BRN52_20965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRN52_20965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRN52_20965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRN52_20965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRN52_20970 PF00483 Nucleotidyl transferase BRN52_20970 PF01050 Mannose-6-phosphate isomerase BRN52_20975 PF04321 RmlD substrate binding domain BRN52_20980 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BRN52_20985 PF00483 Nucleotidyl transferase BRN52_20990 PF16363 GDP-mannose 4,6 dehydratase BRN52_20995 PF01012 Electron transfer flavoprotein domain BRN52_21000 PF00766 Electron transfer flavoprotein FAD-binding domain BRN52_21000 PF01012 Electron transfer flavoprotein domain BRN52_21010 PF00005 ABC transporter BRN52_21020 PF00872 Transposase, Mutator family BRN52_21060 PF01370 NAD dependent epimerase/dehydratase family BRN52_21070 PF01053 Cys/Met metabolism PLP-dependent enzyme BRN52_21075 PF00291 Pyridoxal-phosphate dependent enzyme BRN52_21075 PF00571 CBS domain BRN52_21095 PF00437 Type II/IV secretion system protein BRN52_21100 PF14497 Glutathione S-transferase, C-terminal domain BRN52_21100 PF02798 Glutathione S-transferase, N-terminal domain BRN52_21115 PF00270 DEAD/DEAH box helicase BRN52_21115 PF00271 Helicase conserved C-terminal domain BRN52_21125 PF01242 6-pyruvoyl tetrahydropterin synthase BRN52_21140 PF13185 GAF domain BRN52_21150 PF13419 Haloacid dehalogenase-like hydrolase BRN52_21155 PF11799 impB/mucB/samB family C-terminal domain BRN52_21155 PF00817 impB/mucB/samB family BRN52_21165 PF07977 FabA-like domain BRN52_21170 PF02801 Beta-ketoacyl synthase, C-terminal domain BRN52_21170 PF00109 Beta-ketoacyl synthase, N-terminal domain BRN52_21180 PF01432 Peptidase family M3 BRN52_21195 PF00394 Multicopper oxidase BRN52_21195 PF07731 Multicopper oxidase BRN52_21195 PF07732 Multicopper oxidase BRN52_21200 PF05275 Copper resistance protein B precursor (CopB) BRN52_21205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BRN52_21230 PF01380 SIS domain BRN52_21235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BRN52_21270 PF00132 Bacterial transferase hexapeptide (six repeats) BRN52_21270 PF12804 MobA-like NTP transferase domain BRN52_21270 PF14602 Hexapeptide repeat of succinyl-transferase BRN52_21285 PF01817 Chorismate mutase type II BRN52_21290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BRN52_21295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRN52_21295 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRN52_21300 PF00231 ATP synthase BRN52_21305 PF02874 ATP synthase alpha/beta family, beta-barrel domain BRN52_21305 PF00306 ATP synthase alpha/beta chain, C terminal domain BRN52_21305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BRN52_21310 PF00213 ATP synthase delta (OSCP) subunit BRN52_21315 PF00430 ATP synthase B/B' CF(0) BRN52_21320 PF00137 ATP synthase subunit C BRN52_21325 PF00119 ATP synthase A chain BRN52_21345 PF07992 Pyridine nucleotide-disulphide oxidoreductase BRN52_21345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BRN52_21355 PF00364 Biotin-requiring enzyme BRN52_21355 PF02817 e3 binding domain BRN52_21355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BRN52_21380 PF03180 NLPA lipoprotein BRN52_21385 PF00528 Binding-protein-dependent transport system inner membrane component BRN52_21390 PF09383 NIL domain BRN52_21390 PF00005 ABC transporter BRN52_21395 PF00892 EamA-like transporter family BRN52_21400 PF04461 Protein of unknown function (DUF520) BRN52_21435 PF13419 Haloacid dehalogenase-like hydrolase BRN52_21440 PF01479 S4 domain BRN52_21440 PF00849 RNA pseudouridylate synthase BRN52_21445 PF08468 Methyltransferase small domain N-terminal BRN52_21445 PF05175 Methyltransferase small domain BRN52_21460 PF07995 Glucose / Sorbosone dehydrogenase BRN52_21475 PF00989 PAS fold BRN52_21475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_21475 PF00512 His Kinase A (phospho-acceptor) domain BRN52_21495 PF01168 Alanine racemase, N-terminal domain BRN52_21495 PF00842 Alanine racemase, C-terminal domain BRN52_21500 PF01266 FAD dependent oxidoreductase BRN52_21505 PF01037 Lrp/AsnC ligand binding domain BRN52_21515 PF01641 SelR domain BRN52_21525 PF01618 MotA/TolQ/ExbB proton channel family BRN52_21530 PF00691 OmpA family BRN52_21530 PF13677 Membrane MotB of proton-channel complex MotA/MotB BRN52_21550 PF00072 Response regulator receiver domain BRN52_21550 PF00486 Transcriptional regulatory protein, C terminal BRN52_21555 PF00512 His Kinase A (phospho-acceptor) domain BRN52_21555 PF00072 Response regulator receiver domain BRN52_21555 PF08448 PAS fold BRN52_21555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_21555 PF13188 PAS domain BRN52_21565 PF00082 Subtilase family BRN52_21565 PF04151 Bacterial pre-peptidase C-terminal domain BRN52_21585 PF01061 ABC-2 type transporter BRN52_21590 PF00005 ABC transporter BRN52_21595 PF00999 Sodium/hydrogen exchanger family BRN52_21610 PF02469 Fasciclin domain BRN52_21620 PF03167 Uracil DNA glycosylase superfamily BRN52_21630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRN52_21640 PF03358 NADPH-dependent FMN reductase BRN52_21645 PF00248 Aldo/keto reductase family BRN52_21660 PF05649 Peptidase family M13 BRN52_21660 PF01431 Peptidase family M13 BRN52_21680 PF13520 Amino acid permease BRN52_21695 PF06580 Histidine kinase BRN52_21695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_21695 PF02743 Cache domain BRN52_21695 PF00672 HAMP domain BRN52_21745 PF01339 CheB methylesterase BRN52_21745 PF01739 CheR methyltransferase, SAM binding domain BRN52_21745 PF08448 PAS fold BRN52_21745 PF03705 CheR methyltransferase, all-alpha domain BRN52_21760 PF00072 Response regulator receiver domain BRN52_21760 PF00158 Sigma-54 interaction domain BRN52_21760 PF02954 Bacterial regulatory protein, Fis family BRN52_21775 PF01654 Cytochrome bd terminal oxidase subunit I BRN52_21780 PF02322 Cytochrome bd terminal oxidase subunit II BRN52_21810 PF05598 Transposase domain (DUF772) BRN52_21810 PF01609 Transposase DDE domain BRN52_21830 PF13593 SBF-like CPA transporter family (DUF4137) BRN52_21845 PF01040 UbiA prenyltransferase family BRN52_21870 PF00510 Cytochrome c oxidase subunit III BRN52_21875 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BRN52_21885 PF00115 Cytochrome C and Quinol oxidase polypeptide I BRN52_21890 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BRN52_21890 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BRN52_21900 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BRN52_21900 PF14850 DNA-binding domain of Proline dehydrogenase BRN52_21900 PF01619 Proline dehydrogenase BRN52_21900 PF00171 Aldehyde dehydrogenase family BRN52_21915 PF00210 Ferritin-like domain BRN52_21925 PF00293 NUDIX domain BRN52_21940 PF00380 Ribosomal protein S9/S16 BRN52_21945 PF00572 Ribosomal protein L13 BRN52_21950 PF03232 Ubiquinone biosynthesis protein COQ7 BRN52_21955 PF00893 Small Multidrug Resistance protein BRN52_21960 PF02675 S-adenosylmethionine decarboxylase BRN52_21965 PF00027 Cyclic nucleotide-binding domain BRN52_21965 PF00325 Bacterial regulatory proteins, crp family BRN52_21975 PF00218 Indole-3-glycerol phosphate synthase BRN52_21980 PF00591 Glycosyl transferase family, a/b domain BRN52_21980 PF02885 Glycosyl transferase family, helical bundle domain BRN52_21995 PF00117 Glutamine amidotransferase class-I BRN52_22020 PF03971 Monomeric isocitrate dehydrogenase BRN52_22030 PF05598 Transposase domain (DUF772) BRN52_22095 PF00145 C-5 cytosine-specific DNA methylase BRN52_22100 PF03852 DNA mismatch endonuclease Vsr BRN52_22130 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BRN52_22145 PF07996 Type IV secretion system proteins BRN52_22165 PF00589 Phage integrase family BRN52_22180 PF04546 Sigma-70, non-essential region BRN52_22180 PF04545 Sigma-70, region 4 BRN52_22180 PF04539 Sigma-70 region 3 BRN52_22180 PF04542 Sigma-70 region 2 BRN52_22180 PF00140 Sigma-70 factor, region 1.2 BRN52_22180 PF03979 Sigma-70 factor, region 1.1 BRN52_22185 PF02580 D-Tyr-tRNA(Tyr) deacylase BRN52_22190 PF03279 Bacterial lipid A biosynthesis acyltransferase BRN52_22205 PF00925 GTP cyclohydrolase II BRN52_22225 PF00535 Glycosyl transferase family 2 BRN52_22240 PF01029 NusB family BRN52_22240 PF01189 16S rRNA methyltransferase RsmB/F BRN52_22245 PF00551 Formyl transferase BRN52_22245 PF02911 Formyl transferase, C-terminal domain BRN52_22250 PF01327 Polypeptide deformylase BRN52_22255 PF01476 LysM domain BRN52_22260 PF02481 DNA recombination-mediator protein A BRN52_22260 PF17782 DprA winged helix domain BRN52_22265 PF04361 Protein of unknown function (DUF494) BRN52_22270 PF07963 Prokaryotic N-terminal methylation motif BRN52_22270 PF00114 Pilin (bacterial filament) BRN52_22280 PF01131 DNA topoisomerase BRN52_22280 PF13368 Topoisomerase C-terminal repeat BRN52_22280 PF01751 Toprim domain BRN52_22285 PF01300 Telomere recombination BRN52_22310 PF01343 Peptidase family S49 BRN52_22315 PF01554 MatE BRN52_22340 PF00271 Helicase conserved C-terminal domain BRN52_22340 PF17764 3′ DNA-binding domain (3′BD) BRN52_22340 PF18074 Primosomal protein N C-terminal domain BRN52_22340 PF00270 DEAD/DEAH box helicase BRN52_22340 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BRN52_22370 PF03091 CutA1 divalent ion tolerance protein BRN52_22375 PF11412 Disulphide bond corrector protein DsbC BRN52_22375 PF02683 Cytochrome C biogenesis protein transmembrane region BRN52_22390 PF01220 Dehydroquinase class II BRN52_22395 PF00364 Biotin-requiring enzyme BRN52_22405 PF00289 Biotin carboxylase, N-terminal domain BRN52_22405 PF02785 Biotin carboxylase C-terminal domain BRN52_22405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BRN52_22450 PF01381 Helix-turn-helix BRN52_22465 PF02954 Bacterial regulatory protein, Fis family BRN52_22485 PF05598 Transposase domain (DUF772) BRN52_22510 PF04829 Pre-toxin domain with VENN motif BRN52_22510 PF05860 haemagglutination activity domain BRN52_22510 PF13332 Hemagglutinin repeat BRN52_22510 PF13018 Extended Signal Peptide of Type V secretion system BRN52_22515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BRN52_22515 PF17287 POTRA domain BRN52_22515 PF08479 POTRA domain, ShlB-type BRN52_22530 PF00818 Ice nucleation protein repeat BRN52_22540 PF00782 Dual specificity phosphatase, catalytic domain BRN52_22545 PF12146 Serine aminopeptidase, S33 BRN52_22545 PF12147 Putative methyltransferase BRN52_22555 PF12146 Serine aminopeptidase, S33 BRN52_22555 PF12147 Putative methyltransferase BRN52_22565 PF01808 AICARFT/IMPCHase bienzyme BRN52_22565 PF02142 MGS-like domain BRN52_22570 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system BRN52_22580 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BRN52_22580 PF02843 Phosphoribosylglycinamide synthetase, C domain BRN52_22580 PF02844 Phosphoribosylglycinamide synthetase, N domain BRN52_22585 PF12704 MacB-like periplasmic core domain BRN52_22585 PF02687 FtsX-like permease family BRN52_22585 PF00005 ABC transporter BRN52_22595 PF12805 FUSC-like inner membrane protein yccS BRN52_22610 PF07690 Major Facilitator Superfamily BRN52_22635 PF03186 CobD/Cbib protein BRN52_22635 PF17113 Regulatory signalling modulator protein AmpE BRN52_22640 PF00293 NUDIX domain BRN52_22640 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BRN52_22640 PF09297 NADH pyrophosphatase zinc ribbon domain BRN52_22650 PF01521 Iron-sulphur cluster biosynthesis BRN52_22670 PF00486 Transcriptional regulatory protein, C terminal BRN52_22670 PF00072 Response regulator receiver domain BRN52_22675 PF01627 Hpt domain BRN52_22675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BRN52_22675 PF00072 Response regulator receiver domain BRN52_22675 PF00672 HAMP domain BRN52_22675 PF00512 His Kinase A (phospho-acceptor) domain BRN52_22675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_22710 PF00579 tRNA synthetases class I (W and Y) BRN52_22715 PF04225 Opacity-associated protein A LysM-like domain BRN52_22715 PF01551 Peptidase family M23 BRN52_22720 PF03702 Anhydro-N-acetylmuramic acid kinase BRN52_22730 PF07690 Major Facilitator Superfamily BRN52_22735 PF03372 Endonuclease/Exonuclease/phosphatase family BRN52_22740 PF00156 Phosphoribosyl transferase domain BRN52_22750 PF13614 AAA domain BRN52_22755 PF17762 HTH domain found in ParB protein BRN52_22755 PF02195 ParB-like nuclease domain BRN52_22765 PF01370 NAD dependent epimerase/dehydratase family BRN52_22770 PF00535 Glycosyl transferase family 2 BRN52_22785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BRN52_22785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BRN52_22785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BRN52_22785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BRN52_22790 PF00692 dUTPase BRN52_22795 PF02441 Flavoprotein BRN52_22795 PF04127 DNA / pantothenate metabolism flavoprotein BRN52_22800 PF04002 RadC-like JAB domain BRN52_22805 PF03485 Arginyl tRNA synthetase N terminal domain BRN52_22805 PF00750 tRNA synthetases class I (R) BRN52_22805 PF05746 DALR anticodon binding domain BRN52_22820 PF00106 short chain dehydrogenase BRN52_22845 PF02627 Carboxymuconolactone decarboxylase family BRN52_22850 PF12146 Serine aminopeptidase, S33 BRN52_22855 PF10397 Adenylosuccinate lyase C-terminus BRN52_22855 PF00206 Lyase BRN52_22870 PF00775 Dioxygenase BRN52_22870 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BRN52_22875 PF00108 Thiolase, N-terminal domain BRN52_22875 PF02803 Thiolase, C-terminal domain BRN52_22910 PF00268 Ribonucleotide reductase, small chain BRN52_22920 PF03477 ATP cone domain BRN52_22920 PF00317 Ribonucleotide reductase, all-alpha domain BRN52_22920 PF02867 Ribonucleotide reductase, barrel domain BRN52_22935 PF13380 CoA binding domain BRN52_22935 PF13607 Succinyl-CoA ligase like flavodoxin domain BRN52_22935 PF00583 Acetyltransferase (GNAT) family BRN52_22945 PF01769 Divalent cation transporter BRN52_22945 PF00571 CBS domain BRN52_22945 PF03448 MgtE intracellular N domain BRN52_22950 PF00999 Sodium/hydrogen exchanger family BRN52_22950 PF02254 TrkA-N domain BRN52_22965 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BRN52_22965 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BRN52_22970 PF00723 Glycosyl hydrolases family 15 BRN52_22985 PF05166 YcgL domain BRN52_22990 PF00109 Beta-ketoacyl synthase, N-terminal domain BRN52_22990 PF02801 Beta-ketoacyl synthase, C-terminal domain BRN52_23000 PF00535 Glycosyl transferase family 2 BRN52_23030 PF00155 Aminotransferase class I and II BRN52_23035 PF04055 Radical SAM superfamily BRN52_23035 PF06968 Biotin and Thiamin Synthesis associated domain BRN52_23045 PF01040 UbiA prenyltransferase family BRN52_23060 PF01594 AI-2E family transporter BRN52_23070 PF00883 Cytosol aminopeptidase family, catalytic domain BRN52_23070 PF02789 Cytosol aminopeptidase family, N-terminal domain BRN52_23080 PF08281 Sigma-70, region 4 BRN52_23080 PF04542 Sigma-70 region 2 BRN52_23085 PF00199 Catalase BRN52_23105 PF00892 EamA-like transporter family BRN52_23130 PF00753 Metallo-beta-lactamase superfamily BRN52_23135 PF00579 tRNA synthetases class I (W and Y) BRN52_23140 PF05532 CsbD-like BRN52_23155 PF00491 Arginase family BRN52_23180 PF02223 Thymidylate kinase BRN52_23195 PF03309 Type III pantothenate kinase BRN52_23200 PF02237 Biotin protein ligase C terminal domain BRN52_23200 PF03099 Biotin/lipoate A/B protein ligase family BRN52_23200 PF08279 HTH domain BRN52_23225 PF00672 HAMP domain BRN52_23225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_23225 PF00512 His Kinase A (phospho-acceptor) domain BRN52_23230 PF00486 Transcriptional regulatory protein, C terminal BRN52_23230 PF00072 Response regulator receiver domain BRN52_23240 PF01207 Dihydrouridine synthase (Dus) BRN52_23265 PF06628 Catalase-related immune-responsive BRN52_23265 PF00199 Catalase BRN52_23270 PF13533 Biotin-lipoyl like BRN52_23290 PF01609 Transposase DDE domain BRN52_23290 PF05598 Transposase domain (DUF772) BRN52_23295 PF13307 Helicase C-terminal domain BRN52_23295 PF06733 DEAD_2 BRN52_23305 PF01488 Shikimate / quinate 5-dehydrogenase BRN52_23305 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BRN52_23305 PF08501 Shikimate dehydrogenase substrate binding domain BRN52_23320 PF00258 Flavodoxin BRN52_23320 PF00667 FAD binding domain BRN52_23320 PF00175 Oxidoreductase NAD-binding domain BRN52_23330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_23330 PF03466 LysR substrate binding domain BRN52_23345 PF00490 Delta-aminolevulinic acid dehydratase BRN52_23370 PF00326 Prolyl oligopeptidase family BRN52_23370 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BRN52_23380 PF00043 Glutathione S-transferase, C-terminal domain BRN52_23380 PF02798 Glutathione S-transferase, N-terminal domain BRN52_23400 PF04820 Tryptophan halogenase BRN52_23415 PF00005 ABC transporter BRN52_23425 PF01381 Helix-turn-helix BRN52_23435 PF02583 Metal-sensitive transcriptional repressor BRN52_23440 PF01545 Cation efflux family BRN52_23445 PF00111 2Fe-2S iron-sulfur cluster binding domain BRN52_23445 PF00175 Oxidoreductase NAD-binding domain BRN52_23445 PF00970 Oxidoreductase FAD-binding domain BRN52_23450 PF00005 ABC transporter BRN52_23455 PF01061 ABC-2 type transporter BRN52_23465 PF02558 Ketopantoate reductase PanE/ApbA BRN52_23465 PF08546 Ketopantoate reductase PanE/ApbA C terminal BRN52_23560 PF07478 D-ala D-ala ligase C-terminus BRN52_23560 PF01820 D-ala D-ala ligase N-terminus BRN52_23575 PF03109 ABC1 family BRN52_23585 PF00849 RNA pseudouridylate synthase BRN52_23595 PF00472 RF-1 domain BRN52_23615 PF01432 Peptidase family M3 BRN52_23645 PF05336 L-rhamnose mutarotase BRN52_23650 PF07690 Major Facilitator Superfamily BRN52_23655 PF01614 Bacterial transcriptional regulator BRN52_23655 PF09339 IclR helix-turn-helix domain BRN52_23665 PF02659 Putative manganese efflux pump BRN52_23670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BRN52_23670 PF00512 His Kinase A (phospho-acceptor) domain BRN52_23685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BRN52_23685 PF06165 Glycosyltransferase family 36 BRN52_23705 PF13570 PQQ-like domain BRN52_23705 PF01011 PQQ enzyme repeat BRN52_23705 PF13360 PQQ-like domain BRN52_23750 PF05598 Transposase domain (DUF772) BRN52_23750 PF01609 Transposase DDE domain BRN52_23820 PF00005 ABC transporter BRN52_23825 PF02405 Permease MlaE BRN52_23830 PF02470 MlaD protein BRN52_23835 PF05494 MlaC protein BRN52_23845 PF04333 MlaA lipoprotein BRN52_23870 PF06827 Zinc finger found in FPG and IleRS BRN52_23870 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BRN52_23870 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BRN52_23920 PF13426 PAS domain BRN52_23920 PF08446 PAS fold BRN52_23920 PF00360 Phytochrome region BRN52_23920 PF01590 GAF domain BRN52_23925 PF01126 Heme oxygenase BRN52_23930 PF07690 Major Facilitator Superfamily BRN52_23935 PF01263 Aldose 1-epimerase BRN52_23950 PF02810 SEC-C motif BRN52_23960 PF00150 Cellulase (glycosyl hydrolase family 5) BRN52_23970 PF00150 Cellulase (glycosyl hydrolase family 5) BRN52_23980 PF00150 Cellulase (glycosyl hydrolase family 5) BRN52_23990 PF08240 Alcohol dehydrogenase GroES-like domain BRN52_23990 PF00107 Zinc-binding dehydrogenase BRN52_24050 PF01037 Lrp/AsnC ligand binding domain BRN52_24055 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BRN52_24070 PF00657 GDSL-like Lipase/Acylhydrolase BRN52_24095 PF00248 Aldo/keto reductase family BRN52_24100 PF16884 N-terminal domain of oxidoreductase BRN52_24100 PF00107 Zinc-binding dehydrogenase BRN52_24105 PF00248 Aldo/keto reductase family BRN52_24115 PF00849 RNA pseudouridylate synthase BRN52_24130 PF00270 DEAD/DEAH box helicase BRN52_24130 PF00271 Helicase conserved C-terminal domain BRN52_24130 PF08482 ATP-dependent helicase C-terminal BRN52_24130 PF04408 Helicase associated domain (HA2) BRN52_24135 PF07308 Protein of unknown function (DUF1456) BRN52_24140 PF13378 Enolase C-terminal domain-like BRN52_24140 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BRN52_24150 PF01557 Fumarylacetoacetate (FAA) hydrolase family BRN52_24165 PF00248 Aldo/keto reductase family BRN52_24175 PF04616 Glycosyl hydrolases family 43 BRN52_24175 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BRN52_24200 PF00072 Response regulator receiver domain BRN52_24200 PF00196 Bacterial regulatory proteins, luxR family BRN52_24205 PF16177 Acetyl-coenzyme A synthetase N-terminus BRN52_24205 PF00501 AMP-binding enzyme BRN52_24205 PF13193 AMP-binding enzyme C-terminal domain BRN52_24220 PF04341 Protein of unknown function, DUF485 BRN52_24225 PF00474 Sodium:solute symporter family BRN52_24240 PF03372 Endonuclease/Exonuclease/phosphatase family BRN52_24250 PF04226 Transglycosylase associated protein BRN52_24255 PF01648 4'-phosphopantetheinyl transferase superfamily BRN52_24260 PF16655 PhoD-like phosphatase, N-terminal domain BRN52_24260 PF09423 PhoD-like phosphatase BRN52_24265 PF09423 PhoD-like phosphatase BRN52_24265 PF16655 PhoD-like phosphatase, N-terminal domain BRN52_24270 PF02527 rRNA small subunit methyltransferase G BRN52_24285 PF00830 Ribosomal L28 family BRN52_24290 PF00471 Ribosomal protein L33 BRN52_24295 PF04909 Amidohydrolase BRN52_24305 PF04303 PrpF protein BRN52_24310 PF03737 Aldolase/RraA BRN52_24315 PF03466 LysR substrate binding domain BRN52_24315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BRN52_24320 PF13396 Phospholipase_D-nuclease N-terminal BRN52_24320 PF13091 PLD-like domain BRN52_24340 PF13361 UvrD-like helicase C-terminal domain BRN52_24340 PF00580 UvrD/REP helicase N-terminal domain BRN52_24355 PF13520 Amino acid permease BRN52_24365 PF02646 RmuC family BRN52_24375 PF00255 Glutathione peroxidase BRN52_24380 PF05598 Transposase domain (DUF772) BRN52_24390 PF04055 Radical SAM superfamily BRN52_24400 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BRN52_24415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BRN52_24415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BRN52_24425 PF03572 Peptidase family S41 BRN52_24425 PF13180 PDZ domain BRN52_24430 PF01551 Peptidase family M23 BRN52_24440 PF04389 Peptidase family M28 BRN52_24485 PF02463 RecF/RecN/SMC N terminal domain BRN52_24490 PF01227 GTP cyclohydrolase I BRN52_24510 PF00083 Sugar (and other) transporter BRN52_24555 PF05598 Transposase domain (DUF772) BRN52_24620 PF02595 Glycerate kinase family BRN52_24625 PF07690 Major Facilitator Superfamily BRN52_24640 PF17785 PUA-like domain BRN52_24640 PF10672 S-adenosylmethionine-dependent methyltransferase BRN52_24650 PF03741 Integral membrane protein TerC family BRN52_24655 PF01694 Rhomboid family BRN52_24660 PF03009 Glycerophosphoryl diester phosphodiesterase family BRN52_24670 PF01569 PAP2 superfamily BRN52_24675 PF01926 50S ribosome-binding GTPase BRN52_24675 PF10396 GTP-binding protein TrmE N-terminus BRN52_24675 PF12631 MnmE helical domain BRN52_24680 PF01522 Polysaccharide deacetylase BRN52_24685 PF14849 YidC periplasmic domain BRN52_24685 PF02096 60Kd inner membrane protein BRN52_24690 PF00825 Ribonuclease P BRN52_24695 PF00468 Ribosomal protein L34