locus-tag class description ATY43_00005 PF08299 Bacterial dnaA protein helix-turn-helix ATY43_00005 PF11638 DnaA N-terminal domain ATY43_00005 PF00308 Bacterial dnaA protein ATY43_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ATY43_00010 PF02767 DNA polymerase III beta subunit, central domain ATY43_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ATY43_00015 PF02463 RecF/RecN/SMC N terminal domain ATY43_00020 PF18053 DNA gyrase B subunit insert domain ATY43_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ATY43_00020 PF01751 Toprim domain ATY43_00020 PF00204 DNA gyrase B ATY43_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_00030 PF01435 Peptidase family M48 ATY43_00040 PF03544 Gram-negative bacterial TonB protein C-terminal ATY43_00045 PF01618 MotA/TolQ/ExbB proton channel family ATY43_00050 PF02472 Biopolymer transport protein ExbD/TolR ATY43_00055 PF02472 Biopolymer transport protein ExbD/TolR ATY43_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ATY43_00070 PF13396 Phospholipase_D-nuclease N-terminal ATY43_00070 PF13091 PLD-like domain ATY43_00080 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ATY43_00085 PF00155 Aminotransferase class I and II ATY43_00090 PF07715 TonB-dependent Receptor Plug Domain ATY43_00090 PF00593 TonB dependent receptor ATY43_00100 PF01609 Transposase DDE domain ATY43_00100 PF05598 Transposase domain (DUF772) ATY43_00105 PF01070 FMN-dependent dehydrogenase ATY43_00110 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ATY43_00125 PF07055 Enoyl reductase FAD binding domain ATY43_00125 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ATY43_00125 PF12241 Trans-2-enoyl-CoA reductase catalytic region ATY43_00130 PF00294 pfkB family carbohydrate kinase ATY43_00160 PF05598 Transposase domain (DUF772) ATY43_00160 PF01609 Transposase DDE domain ATY43_00215 PF00293 NUDIX domain ATY43_00215 PF13344 Haloacid dehalogenase-like hydrolase ATY43_00230 PF13936 Helix-turn-helix domain ATY43_00230 PF00665 Integrase core domain ATY43_00265 PF08338 Domain of unknown function (DUF1731) ATY43_00265 PF01370 NAD dependent epimerase/dehydratase family ATY43_00270 PF00512 His Kinase A (phospho-acceptor) domain ATY43_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_00270 PF08521 Two-component sensor kinase N-terminal ATY43_00280 PF00595 PDZ domain ATY43_00310 PF05819 NolX protein ATY43_00360 PF01313 Bacterial export proteins, family 3 ATY43_00365 PF00813 FliP family ATY43_00380 PF00771 FHIPEP family ATY43_00385 PF01312 FlhB HrpN YscU SpaS Family ATY43_00400 PF01514 Secretory protein of YscJ/FliF family ATY43_00415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY43_00415 PF18269 T3SS EscN ATPase C-terminal domain ATY43_00415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY43_00425 PF01311 Bacterial export proteins, family 1 ATY43_00440 PF01464 Transglycosylase SLT domain ATY43_00445 PF05598 Transposase domain (DUF772) ATY43_00475 PF12795 Mechanosensitive ion channel porin domain ATY43_00475 PF12794 Mechanosensitive ion channel inner membrane domain 1 ATY43_00475 PF00924 Mechanosensitive ion channel ATY43_00485 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_00495 PF03109 ABC1 family ATY43_00500 PF05661 Protein of unknown function (DUF808) ATY43_00510 PF00990 Diguanylate cyclase, GGDEF domain ATY43_00510 PF00072 Response regulator receiver domain ATY43_00515 PF00534 Glycosyl transferases group 1 ATY43_00515 PF08323 Starch synthase catalytic domain ATY43_00520 PF00128 Alpha amylase, catalytic domain ATY43_00520 PF02806 Alpha amylase, C-terminal all-beta domain ATY43_00520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY43_00525 PF11941 Domain of unknown function (DUF3459) ATY43_00525 PF00128 Alpha amylase, catalytic domain ATY43_00525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY43_00530 PF02446 4-alpha-glucanotransferase ATY43_00535 PF00128 Alpha amylase, catalytic domain ATY43_00545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY43_00545 PF00128 Alpha amylase, catalytic domain ATY43_00550 PF13460 NAD(P)H-binding ATY43_00560 PF03150 Di-haem cytochrome c peroxidase ATY43_00615 PF06903 VirK protein ATY43_00625 PF00271 Helicase conserved C-terminal domain ATY43_00625 PF00270 DEAD/DEAH box helicase ATY43_00635 PF05598 Transposase domain (DUF772) ATY43_00635 PF01609 Transposase DDE domain ATY43_00655 PF00364 Biotin-requiring enzyme ATY43_00655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY43_00665 PF05598 Transposase domain (DUF772) ATY43_00675 PF00005 ABC transporter ATY43_00695 PF13533 Biotin-lipoyl like ATY43_00710 PF00005 ABC transporter ATY43_00725 PF13936 Helix-turn-helix domain ATY43_00725 PF00665 Integrase core domain ATY43_00735 PF08845 Toxin SymE, type I toxin-antitoxin system ATY43_00750 PF03006 Haemolysin-III related ATY43_00755 PF00271 Helicase conserved C-terminal domain ATY43_00755 PF00270 DEAD/DEAH box helicase ATY43_00755 PF09369 Domain of unknown function (DUF1998) ATY43_00810 PF01645 Conserved region in glutamate synthase ATY43_00810 PF04898 Glutamate synthase central domain ATY43_00810 PF00310 Glutamine amidotransferases class-II ATY43_00810 PF01493 GXGXG motif ATY43_00815 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_00815 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ATY43_00835 PF00665 Integrase core domain ATY43_00835 PF13936 Helix-turn-helix domain ATY43_00850 PF05598 Transposase domain (DUF772) ATY43_00855 PF04962 KduI/IolB family ATY43_00860 PF04962 KduI/IolB family ATY43_00865 PF00356 Bacterial regulatory proteins, lacI family ATY43_00885 PF00128 Alpha amylase, catalytic domain ATY43_00885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY43_00885 PF02806 Alpha amylase, C-terminal all-beta domain ATY43_00890 PF00128 Alpha amylase, catalytic domain ATY43_00890 PF16657 Maltogenic Amylase, C-terminal domain ATY43_00895 PF00128 Alpha amylase, catalytic domain ATY43_00895 PF11896 Domain of unknown function (DUF3416) ATY43_00915 PF00872 Transposase, Mutator family ATY43_00930 PF05598 Transposase domain (DUF772) ATY43_00940 PF01078 Magnesium chelatase, subunit ChlI ATY43_00940 PF13335 Magnesium chelatase, subunit ChlI C-terminal ATY43_00945 PF04380 Membrane fusogenic activity ATY43_00950 PF00543 Nitrogen regulatory protein P-II ATY43_00980 PF17284 Spermidine synthase tetramerisation domain ATY43_00985 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY43_00985 PF17810 Arginine decarboxylase helical bundle domain ATY43_00985 PF17944 Arginine decarboxylase C-terminal helical extension ATY43_01020 PF01134 Glucose inhibited division protein A ATY43_01020 PF13932 GidA associated domain ATY43_01030 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_01050 PF13649 Methyltransferase domain ATY43_01060 PF12697 Alpha/beta hydrolase family ATY43_01070 PF13276 HTH-like domain ATY43_01070 PF13683 Integrase core domain ATY43_01080 PF04349 Periplasmic glucan biosynthesis protein, MdoG ATY43_01090 PF00265 Thymidine kinase ATY43_01095 PF13361 UvrD-like helicase C-terminal domain ATY43_01095 PF00580 UvrD/REP helicase N-terminal domain ATY43_01110 PF04337 Protein of unknown function, DUF480 ATY43_01115 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ATY43_01120 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATY43_01125 PF04820 Tryptophan halogenase ATY43_01140 PF00356 Bacterial regulatory proteins, lacI family ATY43_01150 PF01553 Acyltransferase ATY43_01155 PF16197 Ketoacyl-synthetase C-terminal extension ATY43_01155 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_01155 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_01155 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_01155 PF08659 KR domain ATY43_01155 PF00550 Phosphopantetheine attachment site ATY43_01155 PF14765 Polyketide synthase dehydratase ATY43_01155 PF00698 Acyl transferase domain ATY43_01170 PF01527 Transposase ATY43_01175 PF00872 Transposase, Mutator family ATY43_01225 PF01734 Patatin-like phospholipase ATY43_01235 PF00005 ABC transporter ATY43_01250 PF00005 ABC transporter ATY43_01250 PF00571 CBS domain ATY43_01255 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_01265 PF12867 DinB superfamily ATY43_01265 PF03781 Sulfatase-modifying factor enzyme 1 ATY43_01270 PF10017 Histidine-specific methyltransferase, SAM-dependent ATY43_01275 PF07804 HipA-like C-terminal domain ATY43_01275 PF13657 HipA N-terminal domain ATY43_01280 PF01381 Helix-turn-helix ATY43_01300 PF10609 NUBPL iron-transfer P-loop NTPase ATY43_01300 PF01883 Iron-sulfur cluster assembly protein ATY43_01315 PF13091 PLD-like domain ATY43_01320 PF03061 Thioesterase superfamily ATY43_01360 PF02673 Bacitracin resistance protein BacA ATY43_01365 PF00120 Glutamine synthetase, catalytic domain ATY43_01365 PF03951 Glutamine synthetase, beta-Grasp domain ATY43_01370 PF00543 Nitrogen regulatory protein P-II ATY43_01375 PF00909 Ammonium Transporter Family ATY43_01380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_01380 PF00512 His Kinase A (phospho-acceptor) domain ATY43_01380 PF00989 PAS fold ATY43_01385 PF00158 Sigma-54 interaction domain ATY43_01385 PF00072 Response regulator receiver domain ATY43_01385 PF02954 Bacterial regulatory protein, Fis family ATY43_01390 PF00080 Copper/zinc superoxide dismutase (SODC) ATY43_01395 PF00080 Copper/zinc superoxide dismutase (SODC) ATY43_01455 PF17946 RecC C-terminal domain ATY43_01460 PF00580 UvrD/REP helicase N-terminal domain ATY43_01460 PF12705 PD-(D/E)XK nuclease superfamily ATY43_01460 PF13361 UvrD-like helicase C-terminal domain ATY43_01470 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ATY43_01475 PF01381 Helix-turn-helix ATY43_01545 PF02566 OsmC-like protein ATY43_01550 PF01047 MarR family ATY43_01585 PF00440 Bacterial regulatory proteins, tetR family ATY43_01590 PF00111 2Fe-2S iron-sulfur cluster binding domain ATY43_01590 PF00175 Oxidoreductase NAD-binding domain ATY43_01590 PF00970 Oxidoreductase FAD-binding domain ATY43_01595 PF00487 Fatty acid desaturase ATY43_01610 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_01640 PF04616 Glycosyl hydrolases family 43 ATY43_01665 PF00553 Cellulose binding domain ATY43_01665 PF03422 Carbohydrate binding module (family 6) ATY43_01665 PF00331 Glycosyl hydrolase family 10 ATY43_01670 PF00331 Glycosyl hydrolase family 10 ATY43_01670 PF03422 Carbohydrate binding module (family 6) ATY43_01670 PF00553 Cellulose binding domain ATY43_01675 PF02614 Glucuronate isomerase ATY43_01695 PF08125 Mannitol dehydrogenase C-terminal domain ATY43_01695 PF01232 Mannitol dehydrogenase Rossmann domain ATY43_01700 PF07691 PA14 domain ATY43_01700 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_01700 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY43_01700 PF14310 Fibronectin type III-like domain ATY43_01705 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY43_01705 PF04616 Glycosyl hydrolases family 43 ATY43_01710 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY43_01710 PF13378 Enolase C-terminal domain-like ATY43_01720 PF03648 Glycosyl hydrolase family 67 N-terminus ATY43_01720 PF07477 Glycosyl hydrolase family 67 C-terminus ATY43_01720 PF07488 Glycosyl hydrolase family 67 middle domain ATY43_01725 PF00356 Bacterial regulatory proteins, lacI family ATY43_01735 PF01171 PP-loop family ATY43_01740 PF04381 Putative exonuclease, RdgC ATY43_01760 PF12697 Alpha/beta hydrolase family ATY43_01765 PF00762 Ferrochelatase ATY43_01775 PF02416 mttA/Hcf106 family ATY43_01780 PF02416 mttA/Hcf106 family ATY43_01785 PF00902 Sec-independent protein translocase protein (TatC) ATY43_01795 PF00117 Glutamine amidotransferase class-I ATY43_01795 PF00958 GMP synthase C terminal domain ATY43_01810 PF00437 Type II/IV secretion system protein ATY43_01810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY43_01815 PF02091 Glycyl-tRNA synthetase alpha subunit ATY43_01820 PF05746 DALR anticodon binding domain ATY43_01820 PF02092 Glycyl-tRNA synthetase beta subunit ATY43_01825 PF13181 Tetratricopeptide repeat ATY43_01830 PF00593 TonB dependent receptor ATY43_01830 PF07715 TonB-dependent Receptor Plug Domain ATY43_01840 PF03412 Peptidase C39 family ATY43_01840 PF00664 ABC transporter transmembrane region ATY43_01840 PF00005 ABC transporter ATY43_01845 PF03969 AFG1-like ATPase ATY43_01865 PF02492 CobW/HypB/UreG, nucleotide-binding domain ATY43_01865 PF07683 Cobalamin synthesis protein cobW C-terminal domain ATY43_01925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_01925 PF02770 Acyl-CoA dehydrogenase, middle domain ATY43_01925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_01930 PF01039 Carboxyl transferase domain ATY43_01935 PF00289 Biotin carboxylase, N-terminal domain ATY43_01935 PF00364 Biotin-requiring enzyme ATY43_01935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY43_01935 PF02785 Biotin carboxylase C-terminal domain ATY43_01940 PF00326 Prolyl oligopeptidase family ATY43_01945 PF00665 Integrase core domain ATY43_01945 PF13936 Helix-turn-helix domain ATY43_01985 PF09349 OHCU decarboxylase ATY43_01985 PF01014 Uricase ATY43_02000 PF00266 Aminotransferase class-V ATY43_02045 PF01026 TatD related DNase ATY43_02060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_02060 PF03466 LysR substrate binding domain ATY43_02065 PF07690 Major Facilitator Superfamily ATY43_02075 PF02146 Sir2 family ATY43_02080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY43_02085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY43_02085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY43_02105 PF00551 Formyl transferase ATY43_02110 PF00072 Response regulator receiver domain ATY43_02110 PF00486 Transcriptional regulatory protein, C terminal ATY43_02115 PF00672 HAMP domain ATY43_02115 PF00512 His Kinase A (phospho-acceptor) domain ATY43_02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_02120 PF00672 HAMP domain ATY43_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_02120 PF00512 His Kinase A (phospho-acceptor) domain ATY43_02135 PF02677 Epoxyqueuosine reductase QueH ATY43_02140 PF03466 LysR substrate binding domain ATY43_02140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_02145 PF03358 NADPH-dependent FMN reductase ATY43_02155 PF01717 Cobalamin-independent synthase, Catalytic domain ATY43_02155 PF08267 Cobalamin-independent synthase, N-terminal domain ATY43_02160 PF03812 2-keto-3-deoxygluconate permease ATY43_02170 PF05368 NmrA-like family ATY43_02175 PF01638 HxlR-like helix-turn-helix ATY43_02235 PF04820 Tryptophan halogenase ATY43_02240 PF00550 Phosphopantetheine attachment site ATY43_02250 PF01553 Acyltransferase ATY43_02255 PF07977 FabA-like domain ATY43_02295 PF04357 TamB, inner membrane protein subunit of TAM complex ATY43_02300 PF17243 POTRA domain TamA domain 1 ATY43_02300 PF01103 Surface antigen ATY43_02310 PF01527 Transposase ATY43_02320 PF07498 Rho termination factor, N-terminal domain ATY43_02320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY43_02320 PF07497 Rho termination factor, RNA-binding domain ATY43_02325 PF00085 Thioredoxin ATY43_02330 PF00271 Helicase conserved C-terminal domain ATY43_02330 PF12300 ATP-dependent RNA helicase RhlB ATY43_02330 PF00270 DEAD/DEAH box helicase ATY43_02335 PF00005 ABC transporter ATY43_02340 PF18075 FtsX extracellular domain ATY43_02345 PF01339 CheB methylesterase ATY43_02345 PF00072 Response regulator receiver domain ATY43_02350 PF03167 Uracil DNA glycosylase superfamily ATY43_02355 PF04542 Sigma-70 region 2 ATY43_02355 PF04545 Sigma-70, region 4 ATY43_02365 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_02390 PF00166 Chaperonin 10 Kd subunit ATY43_02395 PF00118 TCP-1/cpn60 chaperonin family ATY43_02405 PF07715 TonB-dependent Receptor Plug Domain ATY43_02405 PF00593 TonB dependent receptor ATY43_02420 PF00793 DAHP synthetase I family ATY43_02460 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY43_02470 PF03710 Glutamate-ammonia ligase adenylyltransferase ATY43_02470 PF08335 GlnD PII-uridylyltransferase ATY43_02475 PF02592 Putative vitamin uptake transporter ATY43_02505 PF00881 Nitroreductase family ATY43_02510 PF04264 YceI-like domain ATY43_02540 PF01527 Transposase ATY43_02555 PF05598 Transposase domain (DUF772) ATY43_02600 PF17831 Pyruvate dehydrogenase E1 component middle domain ATY43_02600 PF00456 Transketolase, thiamine diphosphate binding domain ATY43_02605 PF01966 HD domain ATY43_02605 PF13286 Phosphohydrolase-associated domain ATY43_02640 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY43_02640 PF00476 DNA polymerase family A ATY43_02640 PF01612 3'-5' exonuclease ATY43_02640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY43_02645 PF01218 Coproporphyrinogen III oxidase ATY43_02660 PF05598 Transposase domain (DUF772) ATY43_02660 PF01609 Transposase DDE domain ATY43_02670 PF05598 Transposase domain (DUF772) ATY43_02675 PF00589 Phage integrase family ATY43_02675 PF13495 Phage integrase, N-terminal SAM-like domain ATY43_02680 PF00920 Dehydratase family ATY43_02685 PF03692 Putative zinc- or iron-chelating domain ATY43_02690 PF00132 Bacterial transferase hexapeptide (six repeats) ATY43_02695 PF07690 Major Facilitator Superfamily ATY43_02700 PF11871 Domain of unknown function (DUF3391) ATY43_02700 PF01966 HD domain ATY43_02705 PF05598 Transposase domain (DUF772) ATY43_02715 PF05598 Transposase domain (DUF772) ATY43_02720 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ATY43_02725 PF00501 AMP-binding enzyme ATY43_02730 PF03692 Putative zinc- or iron-chelating domain ATY43_02735 PF00561 alpha/beta hydrolase fold ATY43_02745 PF01555 DNA methylase ATY43_02750 PF02661 Fic/DOC family ATY43_02750 PF13784 Fic/DOC family N-terminal ATY43_02755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY43_02755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY43_02770 PF00588 SpoU rRNA Methylase family ATY43_02775 PF07690 Major Facilitator Superfamily ATY43_02790 PF00072 Response regulator receiver domain ATY43_02790 PF00158 Sigma-54 interaction domain ATY43_02790 PF02954 Bacterial regulatory protein, Fis family ATY43_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_02795 PF00512 His Kinase A (phospho-acceptor) domain ATY43_02800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY43_02800 PF00205 Thiamine pyrophosphate enzyme, central domain ATY43_02800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY43_02810 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATY43_02810 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATY43_02815 PF02556 Preprotein translocase subunit SecB ATY43_02820 PF00581 Rhodanese-like domain ATY43_02845 PF07063 Domain of unknown function (DUF1338) ATY43_02850 PF00873 AcrB/AcrD/AcrF family ATY43_02855 PF00873 AcrB/AcrD/AcrF family ATY43_02860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_02865 PF01546 Peptidase family M20/M25/M40 ATY43_02865 PF07687 Peptidase dimerisation domain ATY43_02875 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ATY43_02875 PF14489 QueF-like protein ATY43_02885 PF00872 Transposase, Mutator family ATY43_02925 PF00005 ABC transporter ATY43_02940 PF00593 TonB dependent receptor ATY43_02940 PF07715 TonB-dependent Receptor Plug Domain ATY43_02985 PF08278 DNA primase DnaG DnaB-binding ATY43_02985 PF10410 DnaB-helicase binding domain of primase ATY43_02985 PF01807 CHC2 zinc finger ATY43_02985 PF08275 DNA primase catalytic core, N-terminal domain ATY43_02990 PF03631 Virulence factor BrkB ATY43_03000 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_03010 PF05598 Transposase domain (DUF772) ATY43_03010 PF01609 Transposase DDE domain ATY43_03045 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY43_03050 PF01475 Ferric uptake regulator family ATY43_03080 PF00313 'Cold-shock' DNA-binding domain ATY43_03095 PF00899 ThiF family ATY43_03100 PF01026 TatD related DNase ATY43_03115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_03115 PF02770 Acyl-CoA dehydrogenase, middle domain ATY43_03115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_03135 PF13417 Glutathione S-transferase, N-terminal domain ATY43_03140 PF00733 Asparagine synthase ATY43_03140 PF13537 Glutamine amidotransferase domain ATY43_03145 PF03358 NADPH-dependent FMN reductase ATY43_03150 PF00772 DnaB-like helicase N terminal domain ATY43_03150 PF03796 DnaB-like helicase C terminal domain ATY43_03155 PF03441 FAD binding domain of DNA photolyase ATY43_03155 PF00875 DNA photolyase ATY43_03170 PF05736 OprF membrane domain ATY43_03170 PF00691 OmpA family ATY43_03190 PF00593 TonB dependent receptor ATY43_03190 PF07715 TonB-dependent Receptor Plug Domain ATY43_03210 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_03210 PF00107 Zinc-binding dehydrogenase ATY43_03215 PF00654 Voltage gated chloride channel ATY43_03225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATY43_03225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATY43_03275 PF03880 DbpA RNA binding domain ATY43_03275 PF00271 Helicase conserved C-terminal domain ATY43_03275 PF00270 DEAD/DEAH box helicase ATY43_03280 PF00563 EAL domain ATY43_03280 PF08448 PAS fold ATY43_03280 PF00990 Diguanylate cyclase, GGDEF domain ATY43_03285 PF01479 S4 domain ATY43_03285 PF00849 RNA pseudouridylate synthase ATY43_03305 PF03737 Aldolase/RraA ATY43_03310 PF00144 Beta-lactamase ATY43_03315 PF00999 Sodium/hydrogen exchanger family ATY43_03320 PF00672 HAMP domain ATY43_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_03320 PF00512 His Kinase A (phospho-acceptor) domain ATY43_03325 PF00072 Response regulator receiver domain ATY43_03325 PF00486 Transcriptional regulatory protein, C terminal ATY43_03330 PF02321 Outer membrane efflux protein ATY43_03345 PF00873 AcrB/AcrD/AcrF family ATY43_03355 PF00664 ABC transporter transmembrane region ATY43_03355 PF00005 ABC transporter ATY43_03365 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_03375 PF01609 Transposase DDE domain ATY43_03375 PF05598 Transposase domain (DUF772) ATY43_03390 PF05598 Transposase domain (DUF772) ATY43_03390 PF01609 Transposase DDE domain ATY43_03405 PF01121 Dephospho-CoA kinase ATY43_03410 PF01478 Type IV leader peptidase family ATY43_03410 PF06750 Bacterial Peptidase A24 N-terminal domain ATY43_03415 PF00482 Type II secretion system (T2SS), protein F ATY43_03420 PF07963 Prokaryotic N-terminal methylation motif ATY43_03420 PF00114 Pilin (bacterial filament) ATY43_03425 PF00884 Sulfatase ATY43_03425 PF08019 Phosphoethanolamine transferase EptA/EptB ATY43_03440 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY43_03440 PF00437 Type II/IV secretion system protein ATY43_03445 PF02661 Fic/DOC family ATY43_03445 PF18543 Intracellular delivery domain ATY43_03455 PF02954 Bacterial regulatory protein, Fis family ATY43_03455 PF00072 Response regulator receiver domain ATY43_03455 PF00158 Sigma-54 interaction domain ATY43_03460 PF00512 His Kinase A (phospho-acceptor) domain ATY43_03460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_03465 PF08442 ATP-grasp domain ATY43_03465 PF00549 CoA-ligase ATY43_03470 PF02629 CoA binding domain ATY43_03470 PF00549 CoA-ligase ATY43_03480 PF02540 NAD synthase ATY43_03480 PF00795 Carbon-nitrogen hydrolase ATY43_03485 PF13525 Outer membrane lipoprotein ATY43_03490 PF00849 RNA pseudouridylate synthase ATY43_03510 PF00982 Glycosyltransferase family 20 ATY43_03515 PF00723 Glycosyl hydrolases family 15 ATY43_03520 PF02358 Trehalose-phosphatase ATY43_03530 PF00593 TonB dependent receptor ATY43_03530 PF07715 TonB-dependent Receptor Plug Domain ATY43_03560 PF04376 Arginine-tRNA-protein transferase, N terminus ATY43_03560 PF04377 Arginine-tRNA-protein transferase, C terminus ATY43_03575 PF08281 Sigma-70, region 4 ATY43_03575 PF04542 Sigma-70 region 2 ATY43_03590 PF00378 Enoyl-CoA hydratase/isomerase ATY43_03605 PF00005 ABC transporter ATY43_03605 PF17755 UvrA DNA-binding domain ATY43_03605 PF17760 UvrA interaction domain ATY43_03610 PF00829 Ribosomal prokaryotic L21 protein ATY43_03615 PF01016 Ribosomal L27 protein ATY43_03620 PF01926 50S ribosome-binding GTPase ATY43_03620 PF01018 GTP1/OBG ATY43_03625 PF01649 Ribosomal protein S20 ATY43_03630 PF03023 Lipid II flippase MurJ ATY43_03635 PF01687 Riboflavin kinase ATY43_03635 PF06574 FAD synthetase ATY43_03640 PF06827 Zinc finger found in FPG and IleRS ATY43_03640 PF08264 Anticodon-binding domain of tRNA ATY43_03640 PF00133 tRNA synthetases class I (I, L, M and V) ATY43_03645 PF01252 Signal peptidase (SPase) II ATY43_03650 PF02401 LytB protein ATY43_03660 PF06481 COX Aromatic Rich Motif ATY43_03660 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY43_03665 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY43_03670 PF00510 Cytochrome c oxidase subunit III ATY43_03675 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ATY43_03685 PF04717 Type VI secretion system, phage-baseplate injector ATY43_03695 PF03527 RHS protein ATY43_03695 PF05593 RHS Repeat ATY43_03755 PF01609 Transposase DDE domain ATY43_03755 PF05598 Transposase domain (DUF772) ATY43_03760 PF05598 Transposase domain (DUF772) ATY43_03760 PF01609 Transposase DDE domain ATY43_03780 PF01527 Transposase ATY43_03785 PF13683 Integrase core domain ATY43_03785 PF13276 HTH-like domain ATY43_03810 PF05190 MutS family domain IV ATY43_03810 PF05192 MutS domain III ATY43_03810 PF00488 MutS domain V ATY43_03810 PF05188 MutS domain II ATY43_03810 PF01624 MutS domain I ATY43_03820 PF13683 Integrase core domain ATY43_03820 PF13276 HTH-like domain ATY43_03830 PF01527 Transposase ATY43_03840 PF18073 Rubredoxin metal binding domain ATY43_03860 PF04185 Phosphoesterase family ATY43_03860 PF05506 Domain of unknown function (DUF756) ATY43_03865 PF05506 Domain of unknown function (DUF756) ATY43_03865 PF04185 Phosphoesterase family ATY43_03870 PF05506 Domain of unknown function (DUF756) ATY43_03870 PF04185 Phosphoesterase family ATY43_03890 PF01336 OB-fold nucleic acid binding domain ATY43_03890 PF00152 tRNA synthetases class II (D, K and N) ATY43_03890 PF02938 GAD domain ATY43_03905 PF01709 Transcriptional regulator ATY43_03910 PF02075 Crossover junction endodeoxyribonuclease RuvC ATY43_03915 PF07499 RuvA, C-terminal domain ATY43_03915 PF01330 RuvA N terminal domain ATY43_03920 PF02705 K+ potassium transporter ATY43_03925 PF17864 RuvB AAA lid domain ATY43_03925 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATY43_03925 PF05491 RuvB C-terminal winged helix domain ATY43_03930 PF03061 Thioesterase superfamily ATY43_03935 PF01618 MotA/TolQ/ExbB proton channel family ATY43_03940 PF02472 Biopolymer transport protein ExbD/TolR ATY43_03950 PF04052 TolB amino-terminal domain ATY43_03950 PF07676 WD40-like Beta Propeller Repeat ATY43_03955 PF00691 OmpA family ATY43_03965 PF04055 Radical SAM superfamily ATY43_03980 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_03985 PF05598 Transposase domain (DUF772) ATY43_03995 PF06508 Queuosine biosynthesis protein QueC ATY43_04015 PF00570 HRDC domain ATY43_04015 PF00271 Helicase conserved C-terminal domain ATY43_04015 PF16124 RecQ zinc-binding ATY43_04015 PF00270 DEAD/DEAH box helicase ATY43_04015 PF09382 RQC domain ATY43_04020 PF00210 Ferritin-like domain ATY43_04025 PF04408 Helicase associated domain (HA2) ATY43_04025 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ATY43_04025 PF00270 DEAD/DEAH box helicase ATY43_04025 PF00271 Helicase conserved C-terminal domain ATY43_04025 PF11898 Domain of unknown function (DUF3418) ATY43_04035 PF02685 Glucokinase ATY43_04040 PF02685 Glucokinase ATY43_04045 PF02685 Glucokinase ATY43_04060 PF04055 Radical SAM superfamily ATY43_04060 PF13186 Iron-sulfur cluster-binding domain ATY43_04065 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ATY43_04070 PF03070 TENA/THI-4/PQQC family ATY43_04075 PF12706 Beta-lactamase superfamily domain ATY43_04080 PF02824 TGS domain ATY43_04080 PF04607 Region found in RelA / SpoT proteins ATY43_04080 PF13291 ACT domain ATY43_04090 PF00535 Glycosyl transferase family 2 ATY43_04095 PF00905 Penicillin binding protein transpeptidase domain ATY43_04095 PF14814 Bifunctional transglycosylase second domain ATY43_04095 PF00912 Transglycosylase ATY43_04105 PF13307 Helicase C-terminal domain ATY43_04105 PF04851 Type III restriction enzyme, res subunit ATY43_04110 PF00814 Glycoprotease family ATY43_04115 PF03747 ADP-ribosylglycohydrolase ATY43_04125 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ATY43_04125 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ATY43_04130 PF00072 Response regulator receiver domain ATY43_04135 PF00072 Response regulator receiver domain ATY43_04140 PF01584 CheW-like domain ATY43_04145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_04145 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ATY43_04150 PF01627 Hpt domain ATY43_04150 PF00072 Response regulator receiver domain ATY43_04150 PF01584 CheW-like domain ATY43_04150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_04165 PF13302 Acetyltransferase (GNAT) domain ATY43_04185 PF12450 von Willebrand factor ATY43_04185 PF00092 von Willebrand factor type A domain ATY43_04185 PF12034 Domain of unknown function (DUF3520) ATY43_04195 PF01112 Asparaginase ATY43_04200 PF03932 CutC family ATY43_04235 PF01301 Glycosyl hydrolases family 35 ATY43_04245 PF07971 Glycosyl hydrolase family 92 ATY43_04245 PF17678 Glycosyl hydrolase family 92 N-terminal domain ATY43_04295 PF00005 ABC transporter ATY43_04295 PF00664 ABC transporter transmembrane region ATY43_04295 PF03412 Peptidase C39 family ATY43_04300 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_04300 PF07691 PA14 domain ATY43_04300 PF14310 Fibronectin type III-like domain ATY43_04300 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY43_04310 PF07691 PA14 domain ATY43_04310 PF02838 Glycosyl hydrolase family 20, domain 2 ATY43_04310 PF00728 Glycosyl hydrolase family 20, catalytic domain ATY43_04320 PF01476 LysM domain ATY43_04320 PF00704 Glycosyl hydrolases family 18 ATY43_04335 PF02685 Glucokinase ATY43_04340 PF04452 RNA methyltransferase ATY43_04345 PF00202 Aminotransferase class-III ATY43_04350 PF00293 NUDIX domain ATY43_04355 PF00459 Inositol monophosphatase family ATY43_04360 PF03819 MazG nucleotide pyrophosphohydrolase domain ATY43_04375 PF16200 C-terminal region of band_7 ATY43_04375 PF01145 SPFH domain / Band 7 family ATY43_04385 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATY43_04385 PF01571 Aminomethyltransferase folate-binding domain ATY43_04390 PF01597 Glycine cleavage H-protein ATY43_04415 PF09317 Domain of unknown function (DUF1974) ATY43_04415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_04415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_04420 PF00561 alpha/beta hydrolase fold ATY43_04425 PF00440 Bacterial regulatory proteins, tetR family ATY43_04430 PF00593 TonB dependent receptor ATY43_04430 PF07715 TonB-dependent Receptor Plug Domain ATY43_04440 PF01430 Hsp33 protein ATY43_04445 PF00912 Transglycosylase ATY43_04450 PF00535 Glycosyl transferase family 2 ATY43_04455 PF00571 CBS domain ATY43_04455 PF00478 IMP dehydrogenase / GMP reductase domain ATY43_04475 PF03006 Haemolysin-III related ATY43_04480 PF16658 Class II release factor RF3, C-terminal domain ATY43_04480 PF00009 Elongation factor Tu GTP binding domain ATY43_04485 PF08525 Opacity-associated protein A N-terminal motif ATY43_04485 PF01476 LysM domain ATY43_04485 PF01551 Peptidase family M23 ATY43_04490 PF00561 alpha/beta hydrolase fold ATY43_04495 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY43_04505 PF03313 Serine dehydratase alpha chain ATY43_04505 PF03315 Serine dehydratase beta chain ATY43_04515 PF04264 YceI-like domain ATY43_04525 PF04264 YceI-like domain ATY43_04530 PF01627 Hpt domain ATY43_04530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_04530 PF00672 HAMP domain ATY43_04530 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY43_04530 PF00072 Response regulator receiver domain ATY43_04530 PF00512 His Kinase A (phospho-acceptor) domain ATY43_04535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_04535 PF00672 HAMP domain ATY43_04535 PF00512 His Kinase A (phospho-acceptor) domain ATY43_04535 PF00072 Response regulator receiver domain ATY43_04535 PF01627 Hpt domain ATY43_04535 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY43_04540 PF00512 His Kinase A (phospho-acceptor) domain ATY43_04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_04540 PF00672 HAMP domain ATY43_04540 PF00072 Response regulator receiver domain ATY43_04540 PF01627 Hpt domain ATY43_04540 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY43_04575 PF07745 Glycosyl hydrolase family 53 ATY43_04590 PF01381 Helix-turn-helix ATY43_04590 PF06114 IrrE N-terminal-like domain ATY43_04590 PF09856 Predicted transcriptional regulator (DUF2083) ATY43_04595 PF00171 Aldehyde dehydrogenase family ATY43_04600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_04600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_04600 PF02770 Acyl-CoA dehydrogenase, middle domain ATY43_04605 PF00378 Enoyl-CoA hydratase/isomerase ATY43_04610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY43_04610 PF00378 Enoyl-CoA hydratase/isomerase ATY43_04610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY43_04615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY43_04615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY43_04620 PF01545 Cation efflux family ATY43_04625 PF00378 Enoyl-CoA hydratase/isomerase ATY43_04625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY43_04625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY43_04630 PF08281 Sigma-70, region 4 ATY43_04630 PF04542 Sigma-70 region 2 ATY43_04645 PF06421 GTP-binding protein LepA C-terminus ATY43_04645 PF03144 Elongation factor Tu domain 2 ATY43_04645 PF00679 Elongation factor G C-terminus ATY43_04645 PF00009 Elongation factor Tu GTP binding domain ATY43_04650 PF10502 Signal peptidase, peptidase S26 ATY43_04660 PF14622 Ribonuclease-III-like ATY43_04660 PF00035 Double-stranded RNA binding motif ATY43_04665 PF01926 50S ribosome-binding GTPase ATY43_04665 PF07650 KH domain ATY43_04670 PF11967 Recombination protein O N terminal ATY43_04670 PF02565 Recombination protein O C terminal ATY43_04680 PF05958 tRNA (Uracil-5-)-methyltransferase ATY43_04695 PF05598 Transposase domain (DUF772) ATY43_04710 PF01323 DSBA-like thioredoxin domain ATY43_04715 PF01593 Flavin containing amine oxidoreductase ATY43_04720 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ATY43_04725 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_04735 PF01048 Phosphorylase superfamily ATY43_04740 PF00313 'Cold-shock' DNA-binding domain ATY43_04745 PF01494 FAD binding domain ATY43_04765 PF00270 DEAD/DEAH box helicase ATY43_04765 PF00271 Helicase conserved C-terminal domain ATY43_04765 PF08494 DEAD/H associated ATY43_04770 PF01068 ATP dependent DNA ligase domain ATY43_04770 PF04679 ATP dependent DNA ligase C terminal region ATY43_04770 PF04675 DNA ligase N terminus ATY43_04780 PF01068 ATP dependent DNA ligase domain ATY43_04780 PF04679 ATP dependent DNA ligase C terminal region ATY43_04780 PF04675 DNA ligase N terminus ATY43_04795 PF00072 Response regulator receiver domain ATY43_04795 PF00990 Diguanylate cyclase, GGDEF domain ATY43_04810 PF02803 Thiolase, C-terminal domain ATY43_04810 PF00108 Thiolase, N-terminal domain ATY43_04815 PF00082 Subtilase family ATY43_04815 PF12951 Passenger-associated-transport-repeat ATY43_04815 PF03797 Autotransporter beta-domain ATY43_04820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATY43_04820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATY43_04830 PF01863 Protein of unknown function DUF45 ATY43_04840 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY43_04845 PF05598 Transposase domain (DUF772) ATY43_04845 PF01609 Transposase DDE domain ATY43_04885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY43_04900 PF08274 PhnA Zinc-Ribbon ATY43_04900 PF03831 PhnA domain ATY43_04910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY43_04915 PF07690 Major Facilitator Superfamily ATY43_04950 PF03706 Lysylphosphatidylglycerol synthase TM region ATY43_04950 PF09924 Uncharacterised conserved protein (DUF2156) ATY43_04965 PF01042 Endoribonuclease L-PSP ATY43_05010 PF04545 Sigma-70, region 4 ATY43_05010 PF04542 Sigma-70 region 2 ATY43_05030 PF04060 Putative Fe-S cluster ATY43_05040 PF01588 Putative tRNA binding domain ATY43_05040 PF09334 tRNA synthetases class I (M) ATY43_05060 PF00324 Amino acid permease ATY43_05065 PF02574 Homocysteine S-methyltransferase ATY43_05085 PF02592 Putative vitamin uptake transporter ATY43_05100 PF05598 Transposase domain (DUF772) ATY43_05160 PF05598 Transposase domain (DUF772) ATY43_05165 PF05598 Transposase domain (DUF772) ATY43_05185 PF13732 Domain of unknown function (DUF4162) ATY43_05185 PF00005 ABC transporter ATY43_05190 PF00593 TonB dependent receptor ATY43_05190 PF07715 TonB-dependent Receptor Plug Domain ATY43_05200 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ATY43_05205 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY43_05205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY43_05205 PF01336 OB-fold nucleic acid binding domain ATY43_05205 PF14579 Helix-hairpin-helix motif ATY43_05205 PF02811 PHP domain ATY43_05210 PF01351 Ribonuclease HII ATY43_05215 PF02684 Lipid-A-disaccharide synthetase ATY43_05220 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ATY43_05220 PF00132 Bacterial transferase hexapeptide (six repeats) ATY43_05225 PF07977 FabA-like domain ATY43_05230 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ATY43_05230 PF00132 Bacterial transferase hexapeptide (six repeats) ATY43_05235 PF07244 Surface antigen variable number repeat ATY43_05235 PF01103 Surface antigen ATY43_05240 PF17820 PDZ domain ATY43_05240 PF02163 Peptidase family M50 ATY43_05245 PF13288 DXP reductoisomerase C-terminal domain ATY43_05245 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATY43_05245 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATY43_05255 PF01255 Putative undecaprenyl diphosphate synthase ATY43_05260 PF01765 Ribosome recycling factor ATY43_05265 PF00696 Amino acid kinase family ATY43_05275 PF00889 Elongation factor TS ATY43_05280 PF00318 Ribosomal protein S2 ATY43_05315 PF00557 Metallopeptidase family M24 ATY43_05320 PF01909 Nucleotidyltransferase domain ATY43_05320 PF08335 GlnD PII-uridylyltransferase ATY43_05320 PF01966 HD domain ATY43_05325 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ATY43_05325 PF14602 Hexapeptide repeat of succinyl-transferase ATY43_05325 PF00132 Bacterial transferase hexapeptide (six repeats) ATY43_05335 PF03960 ArsC family ATY43_05345 PF01546 Peptidase family M20/M25/M40 ATY43_05345 PF07687 Peptidase dimerisation domain ATY43_05350 PF13537 Glutamine amidotransferase domain ATY43_05350 PF00733 Asparagine synthase ATY43_05365 PF07715 TonB-dependent Receptor Plug Domain ATY43_05365 PF00593 TonB dependent receptor ATY43_05380 PF01804 Penicillin amidase ATY43_05385 PF00210 Ferritin-like domain ATY43_05390 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY43_05390 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY43_05395 PF12833 Helix-turn-helix domain ATY43_05410 PF00529 HlyD membrane-fusion protein of T1SS ATY43_05410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_05415 PF07690 Major Facilitator Superfamily ATY43_05430 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_05450 PF13936 Helix-turn-helix domain ATY43_05450 PF00665 Integrase core domain ATY43_05470 PF02779 Transketolase, pyrimidine binding domain ATY43_05470 PF02780 Transketolase, C-terminal domain ATY43_05470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATY43_05480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_05480 PF02770 Acyl-CoA dehydrogenase, middle domain ATY43_05480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_05480 PF12806 Acetyl-CoA dehydrogenase C-terminal like ATY43_05500 PF01668 SmpB protein ATY43_05505 PF03364 Polyketide cyclase / dehydrase and lipid transport ATY43_05510 PF03658 RnfH family Ubiquitin ATY43_05515 PF04355 SmpA / OmlA family ATY43_05520 PF01475 Ferric uptake regulator family ATY43_05525 PF02463 RecF/RecN/SMC N terminal domain ATY43_05530 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ATY43_05530 PF01628 HrcA protein C terminal domain ATY43_05535 PF01025 GrpE ATY43_05540 PF00012 Hsp70 protein ATY43_05545 PF00684 DnaJ central domain ATY43_05545 PF00226 DnaJ domain ATY43_05545 PF01556 DnaJ C terminal domain ATY43_05550 PF08543 Phosphomethylpyrimidine kinase ATY43_05555 PF02153 Prephenate dehydrogenase ATY43_05555 PF01817 Chorismate mutase type II ATY43_05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_05575 PF03466 LysR substrate binding domain ATY43_05585 PF00005 ABC transporter ATY43_05585 PF00664 ABC transporter transmembrane region ATY43_05590 PF01205 Uncharacterized protein family UPF0029 ATY43_05595 PF03641 Possible lysine decarboxylase ATY43_05600 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_05600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY43_05605 PF02817 e3 binding domain ATY43_05605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY43_05605 PF00364 Biotin-requiring enzyme ATY43_05610 PF16078 2-oxoglutarate dehydrogenase N-terminus ATY43_05610 PF16870 2-oxoglutarate dehydrogenase C-terminal ATY43_05610 PF00676 Dehydrogenase E1 component ATY43_05610 PF02779 Transketolase, pyrimidine binding domain ATY43_05620 PF08007 Cupin superfamily protein ATY43_05645 PF08328 Adenylosuccinate lyase C-terminal ATY43_05645 PF00206 Lyase ATY43_05665 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_05675 PF13936 Helix-turn-helix domain ATY43_05675 PF00665 Integrase core domain ATY43_05685 PF13936 Helix-turn-helix domain ATY43_05685 PF00665 Integrase core domain ATY43_05695 PF10415 Fumarase C C-terminus ATY43_05695 PF00206 Lyase ATY43_05725 PF00005 ABC transporter ATY43_05730 PF00392 Bacterial regulatory proteins, gntR family ATY43_05735 PF00255 Glutathione peroxidase ATY43_05740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY43_05740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY43_05745 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY43_05745 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY43_05745 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY43_05750 PF04102 SlyX ATY43_05770 PF07690 Major Facilitator Superfamily ATY43_05775 PF00294 pfkB family carbohydrate kinase ATY43_05785 PF02607 B12 binding domain ATY43_05785 PF02574 Homocysteine S-methyltransferase ATY43_05785 PF00809 Pterin binding enzyme ATY43_05785 PF02965 Vitamin B12 dependent methionine synthase, activation domain ATY43_05785 PF02310 B12 binding domain ATY43_05790 PF00809 Pterin binding enzyme ATY43_05790 PF02574 Homocysteine S-methyltransferase ATY43_05795 PF01209 ubiE/COQ5 methyltransferase family ATY43_05800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY43_05800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY43_05800 PF02770 Acyl-CoA dehydrogenase, middle domain ATY43_05840 PF00588 SpoU rRNA Methylase family ATY43_05840 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY43_05850 PF05598 Transposase domain (DUF772) ATY43_05850 PF01609 Transposase DDE domain ATY43_05900 PF00313 'Cold-shock' DNA-binding domain ATY43_05905 PF00561 alpha/beta hydrolase fold ATY43_05940 PF05598 Transposase domain (DUF772) ATY43_05945 PF13276 HTH-like domain ATY43_05945 PF13683 Integrase core domain ATY43_05950 PF01527 Transposase ATY43_05965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY43_05965 PF02403 Seryl-tRNA synthetase N-terminal domain ATY43_05980 PF01609 Transposase DDE domain ATY43_05980 PF05598 Transposase domain (DUF772) ATY43_05985 PF02525 Flavodoxin-like fold ATY43_05990 PF03466 LysR substrate binding domain ATY43_05990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_06040 PF03377 TAL effector repeat ATY43_06055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_06055 PF00183 Hsp90 protein ATY43_06065 PF01467 Cytidylyltransferase-like ATY43_06080 PF00037 4Fe-4S binding domain ATY43_06100 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_06165 PF13276 HTH-like domain ATY43_06165 PF13333 Integrase core domain ATY43_06165 PF00665 Integrase core domain ATY43_06210 PF05598 Transposase domain (DUF772) ATY43_06215 PF05598 Transposase domain (DUF772) ATY43_06215 PF01609 Transposase DDE domain ATY43_06220 PF05598 Transposase domain (DUF772) ATY43_06255 PF02547 Queuosine biosynthesis protein ATY43_06260 PF01702 Queuine tRNA-ribosyltransferase ATY43_06265 PF02699 Preprotein translocase subunit ATY43_06270 PF02355 Protein export membrane protein ATY43_06270 PF07549 SecD/SecF GG Motif ATY43_06270 PF13721 SecD export protein N-terminal TM region ATY43_06275 PF07549 SecD/SecF GG Motif ATY43_06275 PF02355 Protein export membrane protein ATY43_06280 PF00589 Phage integrase family ATY43_06280 PF13495 Phage integrase, N-terminal SAM-like domain ATY43_06305 PF00872 Transposase, Mutator family ATY43_06320 PF00929 Exonuclease ATY43_06330 PF01895 PhoU domain ATY43_06335 PF00005 ABC transporter ATY43_06340 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_06345 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_06350 PF12849 PBP superfamily domain ATY43_06355 PF12849 PBP superfamily domain ATY43_06370 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_06380 PF00484 Carbonic anhydrase ATY43_06390 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY43_06390 PF00633 Helix-hairpin-helix motif ATY43_06390 PF10576 Iron-sulfur binding domain of endonuclease III ATY43_06400 PF00378 Enoyl-CoA hydratase/isomerase ATY43_06405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY43_06405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY43_06410 PF00293 NUDIX domain ATY43_06415 PF00581 Rhodanese-like domain ATY43_06455 PF01170 Putative RNA methylase family UPF0020 ATY43_06455 PF02926 THUMP domain ATY43_06455 PF10672 S-adenosylmethionine-dependent methyltransferase ATY43_06465 PF01513 ATP-NAD kinase ATY43_06480 PF00248 Aldo/keto reductase family ATY43_06490 PF08411 Exonuclease C-terminal ATY43_06490 PF00929 Exonuclease ATY43_06495 PF01494 FAD binding domain ATY43_06500 PF00266 Aminotransferase class-V ATY43_06510 PF06052 3-hydroxyanthranilic acid dioxygenase ATY43_06515 PF00484 Carbonic anhydrase ATY43_06545 PF01336 OB-fold nucleic acid binding domain ATY43_06545 PF00152 tRNA synthetases class II (D, K and N) ATY43_06550 PF01521 Iron-sulphur cluster biosynthesis ATY43_06555 PF01250 Ribosomal protein S6 ATY43_06560 PF01084 Ribosomal protein S18 ATY43_06565 PF01281 Ribosomal protein L9, N-terminal domain ATY43_06565 PF03948 Ribosomal protein L9, C-terminal domain ATY43_06570 PF02463 RecF/RecN/SMC N terminal domain ATY43_06575 PF04354 ZipA, C-terminal FtsZ-binding domain ATY43_06585 PF12826 Helix-hairpin-helix motif ATY43_06585 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ATY43_06585 PF03120 NAD-dependent DNA ligase OB-fold domain ATY43_06585 PF00533 BRCA1 C Terminus (BRCT) domain ATY43_06585 PF01653 NAD-dependent DNA ligase adenylation domain ATY43_06590 PF00152 tRNA synthetases class II (D, K and N) ATY43_06605 PF01008 Initiation factor 2 subunit family ATY43_06610 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY43_06610 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY43_06615 PF01527 Transposase ATY43_06620 PF13276 HTH-like domain ATY43_06635 PF17392 Urocanase C-terminal domain ATY43_06635 PF17391 Urocanase N-terminal domain ATY43_06635 PF01175 Urocanase Rossmann-like domain ATY43_06645 PF00221 Aromatic amino acid lyase ATY43_06650 PF07969 Amidohydrolase family ATY43_06660 PF00392 Bacterial regulatory proteins, gntR family ATY43_06660 PF07702 UTRA domain ATY43_06685 PF01794 Ferric reductase like transmembrane component ATY43_06690 PF00174 Oxidoreductase molybdopterin binding domain ATY43_06695 PF00266 Aminotransferase class-V ATY43_06700 PF01842 ACT domain ATY43_06700 PF00800 Prephenate dehydratase ATY43_06700 PF01817 Chorismate mutase type II ATY43_06705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY43_06715 PF01527 Transposase ATY43_06720 PF05598 Transposase domain (DUF772) ATY43_06725 PF12951 Passenger-associated-transport-repeat ATY43_06730 PF00196 Bacterial regulatory proteins, luxR family ATY43_06730 PF00072 Response regulator receiver domain ATY43_06735 PF13426 PAS domain ATY43_06735 PF08448 PAS fold ATY43_06735 PF00512 His Kinase A (phospho-acceptor) domain ATY43_06735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_06735 PF00072 Response regulator receiver domain ATY43_06740 PF02321 Outer membrane efflux protein ATY43_06745 PF00873 AcrB/AcrD/AcrF family ATY43_06750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_06755 PF03797 Autotransporter beta-domain ATY43_06755 PF00082 Subtilase family ATY43_06760 PF05598 Transposase domain (DUF772) ATY43_06775 PF01520 N-acetylmuramoyl-L-alanine amidase ATY43_06780 PF02649 Type I GTP cyclohydrolase folE2 ATY43_06795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY43_06800 PF02548 Ketopantoate hydroxymethyltransferase ATY43_06805 PF02569 Pantoate-beta-alanine ligase ATY43_06810 PF02261 Aspartate decarboxylase ATY43_06835 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY43_06835 PF14310 Fibronectin type III-like domain ATY43_06835 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_06840 PF00474 Sodium:solute symporter family ATY43_06850 PF00360 Phytochrome region ATY43_06850 PF00990 Diguanylate cyclase, GGDEF domain ATY43_06850 PF01590 GAF domain ATY43_06850 PF00563 EAL domain ATY43_06865 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY43_06865 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_06865 PF14310 Fibronectin type III-like domain ATY43_06875 PF00854 POT family ATY43_06900 PF12802 MarR family ATY43_06910 PF08281 Sigma-70, region 4 ATY43_06910 PF04542 Sigma-70 region 2 ATY43_06915 PF00082 Subtilase family ATY43_06935 PF00255 Glutathione peroxidase ATY43_06940 PF00970 Oxidoreductase FAD-binding domain ATY43_06940 PF00175 Oxidoreductase NAD-binding domain ATY43_06945 PF00005 ABC transporter ATY43_06950 PF05681 Fumarate hydratase (Fumerase) ATY43_06950 PF05683 Fumarase C-terminus ATY43_06965 PF02253 Phospholipase A1 ATY43_06995 PF08448 PAS fold ATY43_06995 PF00990 Diguanylate cyclase, GGDEF domain ATY43_07015 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_07035 PF05598 Transposase domain (DUF772) ATY43_07050 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_07050 PF01434 Peptidase family M41 ATY43_07050 PF17862 AAA+ lid domain ATY43_07050 PF06480 FtsH Extracellular ATY43_07070 PF01520 N-acetylmuramoyl-L-alanine amidase ATY43_07075 PF02649 Type I GTP cyclohydrolase folE2 ATY43_07090 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY43_07100 PF02569 Pantoate-beta-alanine ligase ATY43_07145 PF05598 Transposase domain (DUF772) ATY43_07185 PF13175 AAA ATPase domain ATY43_07205 PF03960 ArsC family ATY43_07210 PF03358 NADPH-dependent FMN reductase ATY43_07215 PF02040 Arsenical pump membrane protein ATY43_07220 PF00581 Rhodanese-like domain ATY43_07230 PF01526 Tn3 transposase DDE domain ATY43_07230 PF13700 Domain of unknown function (DUF4158) ATY43_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_07240 PF00672 HAMP domain ATY43_07240 PF01627 Hpt domain ATY43_07240 PF00072 Response regulator receiver domain ATY43_07240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY43_07240 PF00512 His Kinase A (phospho-acceptor) domain ATY43_07265 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_07275 PF05598 Transposase domain (DUF772) ATY43_07280 PF01081 KDPG and KHG aldolase ATY43_07285 PF00920 Dehydratase family ATY43_07290 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ATY43_07295 PF02685 Glucokinase ATY43_07300 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY43_07300 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY43_07305 PF17912 MalK OB fold domain ATY43_07305 PF00005 ABC transporter ATY43_07315 PF01571 Aminomethyltransferase folate-binding domain ATY43_07320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY43_07325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY43_07330 PF00890 FAD binding domain ATY43_07330 PF02910 Fumarate reductase flavoprotein C-term ATY43_07340 PF13085 2Fe-2S iron-sulfur cluster binding domain ATY43_07345 PF03937 Flavinator of succinate dehydrogenase ATY43_07355 PF12704 MacB-like periplasmic core domain ATY43_07355 PF02687 FtsX-like permease family ATY43_07360 PF00005 ABC transporter ATY43_07375 PF00753 Metallo-beta-lactamase superfamily ATY43_07375 PF03772 Competence protein ATY43_07380 PF01618 MotA/TolQ/ExbB proton channel family ATY43_07390 PF00664 ABC transporter transmembrane region ATY43_07390 PF00005 ABC transporter ATY43_07395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ATY43_07400 PF02348 Cytidylyltransferase ATY43_07405 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATY43_07415 PF02151 UvrB/uvrC motif ATY43_07415 PF08459 UvrC Helix-hairpin-helix N-terminal ATY43_07415 PF01541 GIY-YIG catalytic domain ATY43_07420 PF01066 CDP-alcohol phosphatidyltransferase ATY43_07440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY43_07485 PF03377 TAL effector repeat ATY43_07505 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_07550 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_07620 PF01502 Phosphoribosyl-AMP cyclohydrolase ATY43_07620 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATY43_07625 PF00977 Histidine biosynthesis protein ATY43_07630 PF00977 Histidine biosynthesis protein ATY43_07635 PF00117 Glutamine amidotransferase class-I ATY43_07640 PF00475 Imidazoleglycerol-phosphate dehydratase ATY43_07645 PF00155 Aminotransferase class I and II ATY43_07650 PF00815 Histidinol dehydrogenase ATY43_07655 PF08029 HisG, C-terminal domain ATY43_07655 PF01634 ATP phosphoribosyltransferase ATY43_07680 PF13393 Histidyl-tRNA synthetase ATY43_07680 PF03129 Anticodon binding domain ATY43_07695 PF14821 Threonine synthase N terminus ATY43_07695 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_07710 PF08544 GHMP kinases C terminal ATY43_07710 PF00288 GHMP kinases N terminal domain ATY43_07715 PF01842 ACT domain ATY43_07715 PF00742 Homoserine dehydrogenase ATY43_07715 PF03447 Homoserine dehydrogenase, NAD binding domain ATY43_07715 PF00696 Amino acid kinase family ATY43_07715 PF13840 ACT domain ATY43_07730 PF00171 Aldehyde dehydrogenase family ATY43_07745 PF01180 Dihydroorotate dehydrogenase ATY43_07750 PF01565 FAD binding domain ATY43_07750 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATY43_07755 PF00892 EamA-like transporter family ATY43_07760 PF01177 Asp/Glu/Hydantoin racemase ATY43_07770 PF07690 Major Facilitator Superfamily ATY43_07780 PF01569 PAP2 superfamily ATY43_07785 PF04551 GcpE protein ATY43_07795 PF00072 Response regulator receiver domain ATY43_07810 PF00575 S1 RNA binding domain ATY43_07810 PF09371 Tex-like protein N-terminal domain ATY43_07810 PF17674 HHH domain ATY43_07810 PF16921 Tex protein YqgF-like domain ATY43_07820 PF01266 FAD dependent oxidoreductase ATY43_07820 PF00355 Rieske [2Fe-2S] domain ATY43_07835 PF00561 alpha/beta hydrolase fold ATY43_07845 PF01066 CDP-alcohol phosphatidyltransferase ATY43_07865 PF03618 Kinase/pyrophosphorylase ATY43_07870 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATY43_07870 PF00391 PEP-utilising enzyme, mobile domain ATY43_07870 PF02896 PEP-utilising enzyme, TIM barrel domain ATY43_07875 PF00924 Mechanosensitive ion channel ATY43_07875 PF05552 Conserved TM helix ATY43_07880 PF00929 Exonuclease ATY43_07885 PF14437 MafB19-like deaminase ATY43_07890 PF01325 Iron dependent repressor, N-terminal DNA binding domain ATY43_07890 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATY43_07895 PF01566 Natural resistance-associated macrophage protein ATY43_07910 PF03466 LysR substrate binding domain ATY43_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_07915 PF03466 LysR substrate binding domain ATY43_07920 PF03601 Conserved hypothetical protein 698 ATY43_07945 PF03466 LysR substrate binding domain ATY43_07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_07950 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ATY43_07950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY43_07950 PF00361 Proton-conducting membrane transporter ATY43_07955 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ATY43_07960 PF02540 NAD synthase ATY43_07960 PF00117 Glutamine amidotransferase class-I ATY43_07960 PF00958 GMP synthase C terminal domain ATY43_07965 PF00478 IMP dehydrogenase / GMP reductase domain ATY43_07965 PF00571 CBS domain ATY43_07970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATY43_07970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATY43_08005 PF00999 Sodium/hydrogen exchanger family ATY43_08005 PF02254 TrkA-N domain ATY43_08010 PF00483 Nucleotidyl transferase ATY43_08015 PF02719 Polysaccharide biosynthesis protein ATY43_08020 PF00953 Glycosyl transferase family 4 ATY43_08025 PF18073 Rubredoxin metal binding domain ATY43_08035 PF00216 Bacterial DNA-binding protein ATY43_08040 PF00575 S1 RNA binding domain ATY43_08045 PF02224 Cytidylate kinase ATY43_08050 PF00444 Ribosomal protein L36 ATY43_08060 PF04371 Porphyromonas-type peptidyl-arginine deiminase ATY43_08070 PF00795 Carbon-nitrogen hydrolase ATY43_08095 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_08100 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_08120 PF00356 Bacterial regulatory proteins, lacI family ATY43_08130 PF03795 YCII-related domain ATY43_08135 PF02616 Segregation and condensation protein ScpA ATY43_08140 PF04079 Segregation and condensation complex subunit ScpB ATY43_08145 PF01479 S4 domain ATY43_08145 PF00849 RNA pseudouridylate synthase ATY43_08165 PF00795 Carbon-nitrogen hydrolase ATY43_08170 PF00155 Aminotransferase class I and II ATY43_08175 PF00005 ABC transporter ATY43_08180 PF03379 CcmB protein ATY43_08185 PF01578 Cytochrome C assembly protein ATY43_08190 PF03100 CcmE ATY43_08195 PF01578 Cytochrome C assembly protein ATY43_08195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY43_08200 PF08534 Redoxin ATY43_08205 PF03918 Cytochrome C biogenesis protein ATY43_08230 PF02913 FAD linked oxidases, C-terminal domain ATY43_08230 PF01565 FAD binding domain ATY43_08235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY43_08235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY43_08245 PF13520 Amino acid permease ATY43_08250 PF13520 Amino acid permease ATY43_08255 PF00596 Class II Aldolase and Adducin N-terminal domain ATY43_08260 PF03079 ARD/ARD' family ATY43_08290 PF05598 Transposase domain (DUF772) ATY43_08290 PF01609 Transposase DDE domain ATY43_08300 PF00899 ThiF family ATY43_08335 PF13936 Helix-turn-helix domain ATY43_08335 PF00665 Integrase core domain ATY43_08380 PF00994 Probable molybdopterin binding domain ATY43_08380 PF03454 MoeA C-terminal region (domain IV) ATY43_08380 PF03453 MoeA N-terminal region (domain I and II) ATY43_08385 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATY43_08385 PF01926 50S ribosome-binding GTPase ATY43_08390 PF13360 PQQ-like domain ATY43_08390 PF01011 PQQ enzyme repeat ATY43_08400 PF13464 Domain of unknown function (DUF4115) ATY43_08410 PF04055 Radical SAM superfamily ATY43_08415 PF00334 Nucleoside diphosphate kinase ATY43_08425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY43_08425 PF00378 Enoyl-CoA hydratase/isomerase ATY43_08425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY43_08430 PF00108 Thiolase, N-terminal domain ATY43_08430 PF02803 Thiolase, C-terminal domain ATY43_08435 PF00654 Voltage gated chloride channel ATY43_08445 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATY43_08455 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_08455 PF16193 AAA C-terminal domain ATY43_08455 PF12002 MgsA AAA+ ATPase C terminal ATY43_08465 PF03548 Outer membrane lipoprotein carrier protein LolA ATY43_08475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ATY43_08475 PF17854 FtsK alpha domain ATY43_08475 PF09397 Ftsk gamma domain ATY43_08475 PF01580 FtsK/SpoIIIE family ATY43_08480 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_08500 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ATY43_08505 PF01176 Translation initiation factor 1A / IF-1 ATY43_08510 PF02861 Clp amino terminal domain, pathogenicity island component ATY43_08510 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_08510 PF17871 AAA lid domain ATY43_08510 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_08510 PF07724 AAA domain (Cdc48 subfamily) ATY43_08515 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATY43_08520 PF00293 NUDIX domain ATY43_08530 PF04356 Protein of unknown function (DUF489) ATY43_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_08535 PF12729 Four helix bundle sensory module for signal transduction ATY43_08535 PF00672 HAMP domain ATY43_08550 PF00990 Diguanylate cyclase, GGDEF domain ATY43_08550 PF00563 EAL domain ATY43_08550 PF08448 PAS fold ATY43_08550 PF08447 PAS fold ATY43_08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_08555 PF07730 Histidine kinase ATY43_08560 PF00563 EAL domain ATY43_08560 PF00990 Diguanylate cyclase, GGDEF domain ATY43_08560 PF03707 Bacterial signalling protein N terminal repeat ATY43_08565 PF13426 PAS domain ATY43_08565 PF13188 PAS domain ATY43_08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_08565 PF00512 His Kinase A (phospho-acceptor) domain ATY43_08565 PF00989 PAS fold ATY43_08585 PF01584 CheW-like domain ATY43_08585 PF00072 Response regulator receiver domain ATY43_08595 PF00460 Flagella basal body rod protein ATY43_08595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY43_08600 PF03963 Flagellar hook capping protein - N-terminal region ATY43_08605 PF07559 Flagellar basal body protein FlaE ATY43_08605 PF00460 Flagella basal body rod protein ATY43_08605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY43_08610 PF00460 Flagella basal body rod protein ATY43_08610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY43_08620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY43_08620 PF00460 Flagella basal body rod protein ATY43_08625 PF02107 Flagellar L-ring protein ATY43_08630 PF02119 Flagellar P-ring protein ATY43_08635 PF10135 Rod binding protein ATY43_08635 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ATY43_08640 PF07196 Flagellin hook IN motif ATY43_08640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY43_08650 PF00700 Bacterial flagellin C-terminal helical region ATY43_08650 PF00669 Bacterial flagellin N-terminal helical region ATY43_08655 PF07196 Flagellin hook IN motif ATY43_08655 PF07195 Flagellar hook-associated protein 2 C-terminus ATY43_08655 PF02465 Flagellar hook-associated protein 2 N-terminus ATY43_08660 PF02561 Flagellar protein FliS ATY43_08675 PF00072 Response regulator receiver domain ATY43_08675 PF00196 Bacterial regulatory proteins, luxR family ATY43_08680 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY43_08680 PF04963 Sigma-54 factor, core binding domain ATY43_08680 PF04552 Sigma-54, DNA binding domain ATY43_08685 PF00072 Response regulator receiver domain ATY43_08685 PF01339 CheB methylesterase ATY43_08690 PF00158 Sigma-54 interaction domain ATY43_08690 PF00072 Response regulator receiver domain ATY43_08690 PF02954 Bacterial regulatory protein, Fis family ATY43_08695 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY43_08705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY43_08705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY43_08745 PF00534 Glycosyl transferases group 1 ATY43_08745 PF00535 Glycosyl transferase family 2 ATY43_08750 PF02049 Flagellar hook-basal body complex protein FliE ATY43_08755 PF01514 Secretory protein of YscJ/FliF family ATY43_08755 PF08345 Flagellar M-ring protein C-terminal ATY43_08760 PF14842 FliG N-terminal domain ATY43_08760 PF14841 FliG middle domain ATY43_08760 PF01706 FliG C-terminal domain ATY43_08770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY43_08770 PF18269 T3SS EscN ATPase C-terminal domain ATY43_08790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY43_08790 PF02154 Flagellar motor switch protein FliM ATY43_08795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY43_08800 PF04347 Flagellar biosynthesis protein, FliO ATY43_08805 PF00813 FliP family ATY43_08815 PF01313 Bacterial export proteins, family 3 ATY43_08820 PF01311 Bacterial export proteins, family 1 ATY43_08825 PF13188 PAS domain ATY43_08825 PF03707 Bacterial signalling protein N terminal repeat ATY43_08825 PF00990 Diguanylate cyclase, GGDEF domain ATY43_08825 PF00563 EAL domain ATY43_08830 PF03707 Bacterial signalling protein N terminal repeat ATY43_08830 PF00563 EAL domain ATY43_08830 PF00990 Diguanylate cyclase, GGDEF domain ATY43_08830 PF13188 PAS domain ATY43_08835 PF03707 Bacterial signalling protein N terminal repeat ATY43_08835 PF00990 Diguanylate cyclase, GGDEF domain ATY43_08835 PF00563 EAL domain ATY43_08840 PF01312 FlhB HrpN YscU SpaS Family ATY43_08845 PF00771 FHIPEP family ATY43_08850 PF00448 SRP54-type protein, GTPase domain ATY43_08855 PF10609 NUBPL iron-transfer P-loop NTPase ATY43_08860 PF04539 Sigma-70 region 3 ATY43_08860 PF04542 Sigma-70 region 2 ATY43_08860 PF04545 Sigma-70, region 4 ATY43_08865 PF00072 Response regulator receiver domain ATY43_08870 PF04344 Chemotaxis phosphatase, CheZ ATY43_08875 PF07194 P2 response regulator binding domain ATY43_08875 PF01627 Hpt domain ATY43_08875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_08875 PF02895 Signal transducing histidine kinase, homodimeric domain ATY43_08875 PF01584 CheW-like domain ATY43_08890 PF13936 Helix-turn-helix domain ATY43_08890 PF00665 Integrase core domain ATY43_08940 PF00873 AcrB/AcrD/AcrF family ATY43_08945 PF00873 AcrB/AcrD/AcrF family ATY43_08960 PF00034 Cytochrome c ATY43_09000 PF05598 Transposase domain (DUF772) ATY43_09015 PF00664 ABC transporter transmembrane region ATY43_09015 PF00005 ABC transporter ATY43_09020 PF00664 ABC transporter transmembrane region ATY43_09020 PF00005 ABC transporter ATY43_09025 PF01654 Cytochrome bd terminal oxidase subunit I ATY43_09030 PF01654 Cytochrome bd terminal oxidase subunit I ATY43_09035 PF02322 Cytochrome bd terminal oxidase subunit II ATY43_09055 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ATY43_09055 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ATY43_09060 PF00171 Aldehyde dehydrogenase family ATY43_09065 PF00696 Amino acid kinase family ATY43_09065 PF01472 PUA domain ATY43_09080 PF00206 Lyase ATY43_09085 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY43_09095 PF00696 Amino acid kinase family ATY43_09095 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase ATY43_09100 PF07687 Peptidase dimerisation domain ATY43_09100 PF01546 Peptidase family M20/M25/M40 ATY43_09110 PF00764 Arginosuccinate synthase ATY43_09115 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY43_09115 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY43_09125 PF09190 DALR domain ATY43_09125 PF01406 tRNA synthetases class I (C) catalytic domain ATY43_09130 PF02657 Fe-S metabolism associated domain ATY43_09145 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY43_09155 PF01809 Putative membrane protein insertion efficiency factor ATY43_09160 PF01979 Amidohydrolase family ATY43_09165 PF01551 Peptidase family M23 ATY43_09165 PF08460 Bacterial SH3 domain ATY43_09170 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ATY43_09190 PF05598 Transposase domain (DUF772) ATY43_09190 PF01609 Transposase DDE domain ATY43_09210 PF01095 Pectinesterase ATY43_09225 PF00295 Glycosyl hydrolases family 28 ATY43_09235 PF13419 Haloacid dehalogenase-like hydrolase ATY43_09245 PF01979 Amidohydrolase family ATY43_09255 PF01132 Elongation factor P (EF-P) OB domain ATY43_09255 PF08207 Elongation factor P (EF-P) KOW-like domain ATY43_09255 PF09285 Elongation factor P, C-terminal ATY43_09260 PF04055 Radical SAM superfamily ATY43_09265 PF13188 PAS domain ATY43_09265 PF00563 EAL domain ATY43_09265 PF00990 Diguanylate cyclase, GGDEF domain ATY43_09265 PF03707 Bacterial signalling protein N terminal repeat ATY43_09275 PF00588 SpoU rRNA Methylase family ATY43_09280 PF00459 Inositol monophosphatase family ATY43_09285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY43_09285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY43_09290 PF00545 ribonuclease ATY43_09315 PF00271 Helicase conserved C-terminal domain ATY43_09315 PF00270 DEAD/DEAH box helicase ATY43_09315 PF03880 DbpA RNA binding domain ATY43_09320 PF00156 Phosphoribosyl transferase domain ATY43_09325 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ATY43_09335 PF02798 Glutathione S-transferase, N-terminal domain ATY43_09335 PF14497 Glutathione S-transferase, C-terminal domain ATY43_09340 PF00313 'Cold-shock' DNA-binding domain ATY43_09345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ATY43_09350 PF07152 YaeQ protein ATY43_09365 PF00072 Response regulator receiver domain ATY43_09365 PF00990 Diguanylate cyclase, GGDEF domain ATY43_09365 PF00563 EAL domain ATY43_09370 PF01435 Peptidase family M48 ATY43_09375 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY43_09380 PF00106 short chain dehydrogenase ATY43_09385 PF05233 PHB accumulation regulatory domain ATY43_09385 PF07879 PHB/PHA accumulation regulator DNA-binding domain ATY43_09400 PF01119 DNA mismatch repair protein, C-terminal domain ATY43_09400 PF08676 MutL C terminal dimerisation domain ATY43_09405 PF01520 N-acetylmuramoyl-L-alanine amidase ATY43_09405 PF11741 AMIN domain ATY43_09410 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATY43_09415 PF01256 Carbohydrate kinase ATY43_09415 PF03853 YjeF-related protein N-terminus ATY43_09420 PF08331 Domain of unknown function (DUF1730) ATY43_09425 PF02601 Exonuclease VII, large subunit ATY43_09425 PF13742 OB-fold nucleic acid binding domain ATY43_09440 PF03781 Sulfatase-modifying factor enzyme 1 ATY43_09450 PF01612 3'-5' exonuclease ATY43_09450 PF00570 HRDC domain ATY43_09490 PF01619 Proline dehydrogenase ATY43_09490 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY43_09490 PF14850 DNA-binding domain of Proline dehydrogenase ATY43_09490 PF00171 Aldehyde dehydrogenase family ATY43_09500 PF01609 Transposase DDE domain ATY43_09500 PF05598 Transposase domain (DUF772) ATY43_09505 PF00872 Transposase, Mutator family ATY43_09535 PF04386 Stringent starvation protein B ATY43_09540 PF02798 Glutathione S-transferase, N-terminal domain ATY43_09540 PF00043 Glutathione S-transferase, C-terminal domain ATY43_09545 PF02167 Cytochrome C1 family ATY43_09550 PF00032 Cytochrome b(C-terminal)/b6/petD ATY43_09550 PF00033 Cytochrome b/b6/petB ATY43_09555 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ATY43_09555 PF00355 Rieske [2Fe-2S] domain ATY43_09560 PF01464 Transglycosylase SLT domain ATY43_09585 PF01938 TRAM domain ATY43_09585 PF00919 Uncharacterized protein family UPF0004 ATY43_09585 PF04055 Radical SAM superfamily ATY43_09590 PF02562 PhoH-like protein ATY43_09600 PF02130 Uncharacterized protein family UPF0054 ATY43_09610 PF03471 Transporter associated domain ATY43_09610 PF00571 CBS domain ATY43_09625 PF00171 Aldehyde dehydrogenase family ATY43_09635 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_09650 PF02321 Outer membrane efflux protein ATY43_09655 PF07690 Major Facilitator Superfamily ATY43_09660 PF13533 Biotin-lipoyl like ATY43_09670 PF00120 Glutamine synthetase, catalytic domain ATY43_09680 PF00120 Glutamine synthetase, catalytic domain ATY43_09685 PF01266 FAD dependent oxidoreductase ATY43_09690 PF00072 Response regulator receiver domain ATY43_09690 PF00990 Diguanylate cyclase, GGDEF domain ATY43_09705 PF00384 Molybdopterin oxidoreductase ATY43_09710 PF02634 FdhD/NarQ family ATY43_09715 PF07690 Major Facilitator Superfamily ATY43_09725 PF00202 Aminotransferase class-III ATY43_09730 PF00005 ABC transporter ATY43_09740 PF04286 Protein of unknown function (DUF445) ATY43_09745 PF00512 His Kinase A (phospho-acceptor) domain ATY43_09745 PF01627 Hpt domain ATY43_09745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_09745 PF00072 Response regulator receiver domain ATY43_09745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY43_09745 PF00672 HAMP domain ATY43_09750 PF00072 Response regulator receiver domain ATY43_09755 PF01609 Transposase DDE domain ATY43_09755 PF05598 Transposase domain (DUF772) ATY43_09760 PF05088 Bacterial NAD-glutamate dehydrogenase ATY43_09770 PF00529 HlyD membrane-fusion protein of T1SS ATY43_09770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_09775 PF00873 AcrB/AcrD/AcrF family ATY43_09790 PF01609 Transposase DDE domain ATY43_09790 PF13006 Insertion element 4 transposase N-terminal ATY43_09795 PF00356 Bacterial regulatory proteins, lacI family ATY43_09800 PF00381 PTS HPr component phosphorylation site ATY43_09800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY43_09800 PF05524 PEP-utilising enzyme, N-terminal ATY43_09800 PF02896 PEP-utilising enzyme, TIM barrel domain ATY43_09800 PF00391 PEP-utilising enzyme, mobile domain ATY43_09805 PF00294 pfkB family carbohydrate kinase ATY43_09810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ATY43_09825 PF01609 Transposase DDE domain ATY43_09825 PF05598 Transposase domain (DUF772) ATY43_09870 PF00665 Integrase core domain ATY43_09870 PF13333 Integrase core domain ATY43_09870 PF13276 HTH-like domain ATY43_09880 PF04717 Type VI secretion system, phage-baseplate injector ATY43_09880 PF16671 Actin cross-linking domain ATY43_09945 PF07715 TonB-dependent Receptor Plug Domain ATY43_09945 PF00593 TonB dependent receptor ATY43_09955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY43_09955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY43_09975 PF01618 MotA/TolQ/ExbB proton channel family ATY43_09980 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY43_09980 PF00691 OmpA family ATY43_09985 PF13614 AAA domain ATY43_09990 PF01584 CheW-like domain ATY43_10000 PF00072 Response regulator receiver domain ATY43_10005 PF01584 CheW-like domain ATY43_10005 PF09078 CheY binding ATY43_10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_10005 PF02895 Signal transducing histidine kinase, homodimeric domain ATY43_10005 PF01627 Hpt domain ATY43_10030 PF00672 HAMP domain ATY43_10030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10030 PF02203 Tar ligand binding domain homologue ATY43_10040 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_10050 PF02203 Tar ligand binding domain homologue ATY43_10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10050 PF00672 HAMP domain ATY43_10060 PF00672 HAMP domain ATY43_10060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10060 PF02203 Tar ligand binding domain homologue ATY43_10065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10065 PF02203 Tar ligand binding domain homologue ATY43_10065 PF00672 HAMP domain ATY43_10070 PF02203 Tar ligand binding domain homologue ATY43_10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10070 PF00672 HAMP domain ATY43_10075 PF00672 HAMP domain ATY43_10075 PF02203 Tar ligand binding domain homologue ATY43_10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10085 PF07238 PilZ domain ATY43_10085 PF07317 Flagellar regulator YcgR ATY43_10090 PF01584 CheW-like domain ATY43_10110 PF00672 HAMP domain ATY43_10110 PF02203 Tar ligand binding domain homologue ATY43_10110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_10115 PF03705 CheR methyltransferase, all-alpha domain ATY43_10115 PF01739 CheR methyltransferase, SAM binding domain ATY43_10120 PF03975 CheD chemotactic sensory transduction ATY43_10125 PF00072 Response regulator receiver domain ATY43_10125 PF01339 CheB methylesterase ATY43_10130 PF03707 Bacterial signalling protein N terminal repeat ATY43_10130 PF00990 Diguanylate cyclase, GGDEF domain ATY43_10130 PF00563 EAL domain ATY43_10140 PF00561 alpha/beta hydrolase fold ATY43_10145 PF00330 Aconitase family (aconitate hydratase) ATY43_10145 PF06434 Aconitate hydratase 2 N-terminus ATY43_10145 PF11791 Aconitate B N-terminal domain ATY43_10160 PF00694 Aconitase C-terminal domain ATY43_10160 PF00330 Aconitase family (aconitate hydratase) ATY43_10170 PF13193 AMP-binding enzyme C-terminal domain ATY43_10170 PF00501 AMP-binding enzyme ATY43_10175 PF00378 Enoyl-CoA hydratase/isomerase ATY43_10180 PF00072 Response regulator receiver domain ATY43_10180 PF01627 Hpt domain ATY43_10180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_10180 PF00512 His Kinase A (phospho-acceptor) domain ATY43_10190 PF00072 Response regulator receiver domain ATY43_10195 PF00152 tRNA synthetases class II (D, K and N) ATY43_10195 PF01336 OB-fold nucleic acid binding domain ATY43_10200 PF03462 PCRF domain ATY43_10200 PF00472 RF-1 domain ATY43_10215 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ATY43_10215 PF01610 Transposase ATY43_10215 PF13542 Helix-turn-helix domain of transposase family ISL3 ATY43_10240 PF01368 DHH family ATY43_10240 PF02272 DHHA1 domain ATY43_10240 PF17768 RecJ OB domain ATY43_10250 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY43_10250 PF03449 Transcription elongation factor, N-terminal ATY43_10255 PF02142 MGS-like domain ATY43_10255 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATY43_10255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY43_10265 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATY43_10265 PF00117 Glutamine amidotransferase class-I ATY43_10270 PF01113 Dihydrodipicolinate reductase, N-terminus ATY43_10270 PF05173 Dihydrodipicolinate reductase, C-terminus ATY43_10280 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_10285 PF03475 3-alpha domain ATY43_10285 PF03473 MOSC domain ATY43_10290 PF00155 Aminotransferase class I and II ATY43_10310 PF07664 Ferrous iron transport protein B C terminus ATY43_10310 PF02421 Ferrous iron transport protein B ATY43_10310 PF07670 Nucleoside recognition ATY43_10320 PF00378 Enoyl-CoA hydratase/isomerase ATY43_10330 PF00682 HMGL-like ATY43_10335 PF00106 short chain dehydrogenase ATY43_10340 PF01132 Elongation factor P (EF-P) OB domain ATY43_10340 PF08207 Elongation factor P (EF-P) KOW-like domain ATY43_10340 PF09285 Elongation factor P, C-terminal ATY43_10360 PF00083 Sugar (and other) transporter ATY43_10370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ATY43_10370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ATY43_10385 PF01055 Glycosyl hydrolases family 31 ATY43_10385 PF17137 Domain of unknown function (DUF5110) ATY43_10385 PF16338 Domain of unknown function (DUF4968) ATY43_10395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_10395 PF03466 LysR substrate binding domain ATY43_10400 PF01081 KDPG and KHG aldolase ATY43_10405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY43_10405 PF13378 Enolase C-terminal domain-like ATY43_10410 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY43_10415 PF05035 2-keto-3-deoxy-galactonokinase ATY43_10420 PF11953 Domain of unknown function (DUF3470) ATY43_10420 PF00037 4Fe-4S binding domain ATY43_10430 PF00701 Dihydrodipicolinate synthetase family ATY43_10445 PF00578 AhpC/TSA family ATY43_10450 PF13638 PIN domain ATY43_10450 PF02562 PhoH-like protein ATY43_10460 PF08543 Phosphomethylpyrimidine kinase ATY43_10490 PF03466 LysR substrate binding domain ATY43_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_10495 PF02678 Pirin ATY43_10495 PF17954 Quercetinase C-terminal cupin domain ATY43_10520 PF03796 DnaB-like helicase C terminal domain ATY43_10520 PF00772 DnaB-like helicase N terminal domain ATY43_10540 PF02599 Global regulator protein family ATY43_10545 PF01411 tRNA synthetases class II (A) ATY43_10545 PF02272 DHHA1 domain ATY43_10545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY43_10550 PF02631 RecX family ATY43_10555 PF00154 recA bacterial DNA recombination protein ATY43_10560 PF00717 Peptidase S24-like ATY43_10560 PF01726 LexA DNA binding domain ATY43_10565 PF03109 ABC1 family ATY43_10570 PF02464 Competence-damaged protein ATY43_10575 PF16360 GTP-binding GTPase Middle Region ATY43_10575 PF13167 GTP-binding GTPase N-terminal ATY43_10575 PF01926 50S ribosome-binding GTPase ATY43_10580 PF17209 Hfq protein ATY43_10590 PF00809 Pterin binding enzyme ATY43_10595 PF01434 Peptidase family M41 ATY43_10595 PF06480 FtsH Extracellular ATY43_10595 PF17862 AAA+ lid domain ATY43_10595 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_10600 PF01728 FtsJ-like methyltransferase ATY43_10605 PF01985 CRS1 / YhbY (CRM) domain ATY43_10615 PF01551 Peptidase family M23 ATY43_10615 PF01476 LysM domain ATY43_10620 PF09335 SNARE associated Golgi protein ATY43_10630 PF01975 Survival protein SurE ATY43_10635 PF01713 Smr domain ATY43_10640 PF01142 tRNA pseudouridine synthase D (TruD) ATY43_10645 PF02542 YgbB family ATY43_10655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATY43_10660 PF04977 Septum formation initiator ATY43_10665 PF03952 Enolase, N-terminal domain ATY43_10665 PF00113 Enolase, C-terminal TIM barrel domain ATY43_10675 PF00793 DAHP synthetase I family ATY43_10680 PF00117 Glutamine amidotransferase class-I ATY43_10680 PF06418 CTP synthase N-terminus ATY43_10690 PF00204 DNA gyrase B ATY43_10690 PF01751 Toprim domain ATY43_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_10690 PF00986 DNA gyrase B subunit, carboxyl terminus ATY43_10715 PF01384 Phosphate transporter family ATY43_10725 PF03471 Transporter associated domain ATY43_10725 PF00571 CBS domain ATY43_10725 PF01595 Cyclin M transmembrane N-terminal domain ATY43_10740 PF00296 Luciferase-like monooxygenase ATY43_10750 PF07690 Major Facilitator Superfamily ATY43_10760 PF00005 ABC transporter ATY43_10760 PF00664 ABC transporter transmembrane region ATY43_10765 PF00005 ABC transporter ATY43_10780 PF00534 Glycosyl transferases group 1 ATY43_10780 PF13579 Glycosyl transferase 4-like domain ATY43_10800 PF08241 Methyltransferase domain ATY43_10815 PF00535 Glycosyl transferase family 2 ATY43_10820 PF01943 Polysaccharide biosynthesis protein ATY43_10825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY43_10845 PF05523 WxcM-like, C-terminal ATY43_10860 PF00034 Cytochrome c ATY43_10870 PF04542 Sigma-70 region 2 ATY43_10870 PF08281 Sigma-70, region 4 ATY43_10880 PF00082 Subtilase family ATY43_10885 PF01578 Cytochrome C assembly protein ATY43_10890 PF04995 Heme exporter protein D (CcmD) ATY43_10895 PF03100 CcmE ATY43_10900 PF01578 Cytochrome C assembly protein ATY43_10900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY43_10905 PF08534 Redoxin ATY43_10910 PF03918 Cytochrome C biogenesis protein ATY43_10940 PF00873 AcrB/AcrD/AcrF family ATY43_10950 PF00873 AcrB/AcrD/AcrF family ATY43_10955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_10955 PF00529 HlyD membrane-fusion protein of T1SS ATY43_10985 PF01527 Transposase ATY43_10990 PF13276 HTH-like domain ATY43_11000 PF13700 Domain of unknown function (DUF4158) ATY43_11000 PF01526 Tn3 transposase DDE domain ATY43_11005 PF00486 Transcriptional regulatory protein, C terminal ATY43_11005 PF00072 Response regulator receiver domain ATY43_11010 PF03150 Di-haem cytochrome c peroxidase ATY43_11010 PF00034 Cytochrome c ATY43_11015 PF00512 His Kinase A (phospho-acceptor) domain ATY43_11015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_11020 PF03466 LysR substrate binding domain ATY43_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_11040 PF00069 Protein kinase domain ATY43_11080 PF16671 Actin cross-linking domain ATY43_11080 PF04717 Type VI secretion system, phage-baseplate injector ATY43_11090 PF05598 Transposase domain (DUF772) ATY43_11090 PF01609 Transposase DDE domain ATY43_11105 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_11105 PF07724 AAA domain (Cdc48 subfamily) ATY43_11105 PF17871 AAA lid domain ATY43_11105 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_11130 PF05638 Type VI secretion system effector, Hcp ATY43_11155 PF01609 Transposase DDE domain ATY43_11155 PF05598 Transposase domain (DUF772) ATY43_11190 PF05598 Transposase domain (DUF772) ATY43_11215 PF13683 Integrase core domain ATY43_11215 PF13276 HTH-like domain ATY43_11225 PF01106 NifU-like domain ATY43_11230 PF01329 Pterin 4 alpha carbinolamine dehydratase ATY43_11240 PF02535 ZIP Zinc transporter ATY43_11245 PF02535 ZIP Zinc transporter ATY43_11250 PF11737 Protein of unknown function (DUF3300) ATY43_11255 PF01479 S4 domain ATY43_11255 PF00849 RNA pseudouridylate synthase ATY43_11260 PF10150 Ribonuclease E/G family ATY43_11260 PF12111 Polyribonucleotide phosphorylase C terminal ATY43_11260 PF00575 S1 RNA binding domain ATY43_11275 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_11280 PF00072 Response regulator receiver domain ATY43_11280 PF00196 Bacterial regulatory proteins, luxR family ATY43_11295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY43_11305 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY43_11305 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY43_11305 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY43_11315 PF01648 4'-phosphopantetheinyl transferase superfamily ATY43_11315 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ATY43_11365 PF00072 Response regulator receiver domain ATY43_11365 PF03861 ANTAR domain ATY43_11375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY43_11375 PF14824 Sirohaem biosynthesis protein central ATY43_11375 PF10414 Sirohaem synthase dimerisation region ATY43_11400 PF12804 MobA-like NTP transferase domain ATY43_11405 PF00994 Probable molybdopterin binding domain ATY43_11405 PF03454 MoeA C-terminal region (domain IV) ATY43_11405 PF03453 MoeA N-terminal region (domain I and II) ATY43_11455 PF00593 TonB dependent receptor ATY43_11455 PF07715 TonB-dependent Receptor Plug Domain ATY43_11470 PF04616 Glycosyl hydrolases family 43 ATY43_11475 PF07532 Bacterial Ig-like domain (group 4) ATY43_11480 PF07715 TonB-dependent Receptor Plug Domain ATY43_11480 PF00593 TonB dependent receptor ATY43_11490 PF09286 Pro-kumamolisin, activation domain ATY43_11490 PF00082 Subtilase family ATY43_11530 PF13520 Amino acid permease ATY43_11545 PF01321 Creatinase/Prolidase N-terminal domain ATY43_11545 PF00557 Metallopeptidase family M24 ATY43_11550 PF00171 Aldehyde dehydrogenase family ATY43_11555 PF00701 Dihydrodipicolinate synthetase family ATY43_11560 PF04324 BFD-like [2Fe-2S] binding domain ATY43_11560 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_11570 PF01266 FAD dependent oxidoreductase ATY43_11575 PF05544 Proline racemase ATY43_11585 PF02881 SRP54-type protein, helical bundle domain ATY43_11585 PF00448 SRP54-type protein, GTPase domain ATY43_11600 PF14815 NUDIX domain ATY43_11600 PF00633 Helix-hairpin-helix motif ATY43_11600 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY43_11605 PF04362 Bacterial Fe(2+) trafficking ATY43_11610 PF13426 PAS domain ATY43_11610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_11610 PF00072 Response regulator receiver domain ATY43_11745 PF03808 Glycosyl transferase WecB/TagA/CpsF family ATY43_11760 PF14667 Polysaccharide biosynthesis C-terminal domain ATY43_11770 PF13439 Glycosyltransferase Family 4 ATY43_11770 PF00534 Glycosyl transferases group 1 ATY43_11790 PF02397 Bacterial sugar transferase ATY43_11810 PF13411 MerR HTH family regulatory protein ATY43_11815 PF00216 Bacterial DNA-binding protein ATY43_11820 PF03483 B3/4 domain ATY43_11820 PF03484 tRNA synthetase B5 domain ATY43_11820 PF03147 Ferredoxin-fold anticodon binding domain ATY43_11820 PF01588 Putative tRNA binding domain ATY43_11820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATY43_11825 PF01409 tRNA synthetases class II core domain (F) ATY43_11825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATY43_11830 PF00453 Ribosomal protein L20 ATY43_11835 PF01632 Ribosomal protein L35 ATY43_11840 PF05198 Translation initiation factor IF-3, N-terminal domain ATY43_11840 PF00707 Translation initiation factor IF-3, C-terminal domain ATY43_11845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY43_11845 PF02824 TGS domain ATY43_11845 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY43_11845 PF03129 Anticodon binding domain ATY43_11855 PF01527 Transposase ATY43_11880 PF17757 UvrB interaction domain ATY43_11880 PF00271 Helicase conserved C-terminal domain ATY43_11880 PF12344 Ultra-violet resistance protein B ATY43_11880 PF04851 Type III restriction enzyme, res subunit ATY43_11880 PF02151 UvrB/uvrC motif ATY43_11885 PF07963 Prokaryotic N-terminal methylation motif ATY43_11885 PF00114 Pilin (bacterial filament) ATY43_11895 PF00114 Pilin (bacterial filament) ATY43_11895 PF07963 Prokaryotic N-terminal methylation motif ATY43_11900 PF05567 Neisseria PilC beta-propeller domain ATY43_11920 PF12019 Type II transport protein GspH ATY43_11920 PF07963 Prokaryotic N-terminal methylation motif ATY43_11925 PF01609 Transposase DDE domain ATY43_11925 PF05598 Transposase domain (DUF772) ATY43_11930 PF11892 Domain of unknown function (DUF3412) ATY43_11930 PF03641 Possible lysine decarboxylase ATY43_11930 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ATY43_11935 PF00593 TonB dependent receptor ATY43_11945 PF01914 MarC family integral membrane protein ATY43_11955 PF00462 Glutaredoxin ATY43_11960 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY43_11960 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY43_11965 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATY43_11965 PF02222 ATP-grasp domain ATY43_11970 PF00731 AIR carboxylase ATY43_11980 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATY43_11980 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATY43_11990 PF00575 S1 RNA binding domain ATY43_11990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATY43_11990 PF01138 3' exoribonuclease family, domain 1 ATY43_11990 PF00013 KH domain ATY43_11990 PF03725 3' exoribonuclease family, domain 2 ATY43_11995 PF00312 Ribosomal protein S15 ATY43_12000 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATY43_12000 PF09157 Pseudouridine synthase II TruB, C-terminal ATY43_12000 PF16198 tRNA pseudouridylate synthase B C-terminal domain ATY43_12005 PF02033 Ribosome-binding factor A ATY43_12010 PF00009 Elongation factor Tu GTP binding domain ATY43_12010 PF11987 Translation-initiation factor 2 ATY43_12010 PF08364 Bacterial translation initiation factor IF-2 associated region ATY43_12010 PF04760 Translation initiation factor IF-2, N-terminal region ATY43_12015 PF08529 NusA N-terminal domain ATY43_12015 PF00575 S1 RNA binding domain ATY43_12015 PF13184 NusA-like KH domain ATY43_12020 PF17384 RimP C-terminal SH3 domain ATY43_12020 PF02576 RimP N-terminal domain ATY43_12030 PF00361 Proton-conducting membrane transporter ATY43_12035 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ATY43_12035 PF00361 Proton-conducting membrane transporter ATY43_12040 PF00361 Proton-conducting membrane transporter ATY43_12040 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY43_12045 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY43_12050 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATY43_12055 PF12838 4Fe-4S dicluster domain ATY43_12060 PF00146 NADH dehydrogenase ATY43_12065 PF00384 Molybdopterin oxidoreductase ATY43_12065 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ATY43_12065 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ATY43_12070 PF10531 SLBB domain ATY43_12070 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ATY43_12070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ATY43_12080 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ATY43_12085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ATY43_12090 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATY43_12095 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATY43_12110 PF00121 Triosephosphate isomerase ATY43_12135 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_12145 PF03707 Bacterial signalling protein N terminal repeat ATY43_12145 PF00990 Diguanylate cyclase, GGDEF domain ATY43_12145 PF00563 EAL domain ATY43_12160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY43_12160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY43_12160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY43_12160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY43_12165 PF17848 Acetyl-coA carboxylase zinc finger domain ATY43_12165 PF01039 Carboxyl transferase domain ATY43_12170 PF00290 Tryptophan synthase alpha chain ATY43_12180 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_12185 PF03466 LysR substrate binding domain ATY43_12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_12190 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATY43_12195 PF01416 tRNA pseudouridine synthase ATY43_12215 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY43_12215 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATY43_12220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY43_12220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY43_12225 PF01264 Chorismate synthase ATY43_12230 PF05175 Methyltransferase small domain ATY43_12235 PF02630 SCO1/SenC ATY43_12240 PF02666 Phosphatidylserine decarboxylase ATY43_12255 PF05872 Bacterial protein of unknown function (DUF853) ATY43_12260 PF13936 Helix-turn-helix domain ATY43_12260 PF00665 Integrase core domain ATY43_12280 PF03449 Transcription elongation factor, N-terminal ATY43_12280 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY43_12285 PF04055 Radical SAM superfamily ATY43_12285 PF00919 Uncharacterized protein family UPF0004 ATY43_12285 PF18693 TRAM domain ATY43_12290 PF01738 Dienelactone hydrolase family ATY43_12305 PF00692 dUTPase ATY43_12310 PF10609 NUBPL iron-transfer P-loop NTPase ATY43_12345 PF01266 FAD dependent oxidoreductase ATY43_12350 PF04235 Protein of unknown function (DUF418) ATY43_12355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY43_12360 PF00877 NlpC/P60 family ATY43_12365 PF00877 NlpC/P60 family ATY43_12380 PF00375 Sodium:dicarboxylate symporter family ATY43_12385 PF00245 Alkaline phosphatase ATY43_12390 PF01171 PP-loop family ATY43_12390 PF09179 TilS substrate binding domain ATY43_12390 PF11734 TilS substrate C-terminal domain ATY43_12395 PF02609 Exonuclease VII small subunit ATY43_12400 PF00348 Polyprenyl synthetase ATY43_12420 PF01523 Putative modulator of DNA gyrase ATY43_12425 PF04751 Protein of unknown function (DUF615) ATY43_12430 PF01523 Putative modulator of DNA gyrase ATY43_12445 PF00575 S1 RNA binding domain ATY43_12445 PF10150 Ribonuclease E/G family ATY43_12450 PF02545 Maf-like protein ATY43_12455 PF04402 Protein of unknown function (DUF541) ATY43_12465 PF05598 Transposase domain (DUF772) ATY43_12465 PF01609 Transposase DDE domain ATY43_12500 PF02590 Predicted SPOUT methyltransferase ATY43_12525 PF01467 Cytidylyltransferase-like ATY43_12540 PF00133 tRNA synthetases class I (I, L, M and V) ATY43_12540 PF13603 Leucyl-tRNA synthetase, Domain 2 ATY43_12540 PF08264 Anticodon-binding domain of tRNA ATY43_12550 PF00085 Thioredoxin ATY43_12565 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_12610 PF01609 Transposase DDE domain ATY43_12610 PF05598 Transposase domain (DUF772) ATY43_12620 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_12630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY43_12630 PF00128 Alpha amylase, catalytic domain ATY43_12635 PF01609 Transposase DDE domain ATY43_12635 PF05598 Transposase domain (DUF772) ATY43_12660 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_12665 PF13936 Helix-turn-helix domain ATY43_12665 PF00665 Integrase core domain ATY43_12700 PF01527 Transposase ATY43_12725 PF03797 Autotransporter beta-domain ATY43_12725 PF00657 GDSL-like Lipase/Acylhydrolase ATY43_12735 PF05690 Thiazole biosynthesis protein ThiG ATY43_12740 PF02390 Putative methyltransferase ATY43_12745 PF03600 Citrate transporter ATY43_12745 PF02080 TrkA-C domain ATY43_12760 PF05598 Transposase domain (DUF772) ATY43_12780 PF00665 Integrase core domain ATY43_12780 PF13936 Helix-turn-helix domain ATY43_12785 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY43_12790 PF01741 Large-conductance mechanosensitive channel, MscL ATY43_12825 PF00135 Carboxylesterase family ATY43_12830 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY43_12830 PF00588 SpoU rRNA Methylase family ATY43_12860 PF01433 Peptidase family M1 domain ATY43_12860 PF11838 ERAP1-like C-terminal domain ATY43_12865 PF00873 AcrB/AcrD/AcrF family ATY43_12870 PF00529 HlyD membrane-fusion protein of T1SS ATY43_12870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_12875 PF00009 Elongation factor Tu GTP binding domain ATY43_12880 PF01507 Phosphoadenosine phosphosulfate reductase family ATY43_12885 PF00258 Flavodoxin ATY43_12885 PF00175 Oxidoreductase NAD-binding domain ATY43_12885 PF00667 FAD binding domain ATY43_12890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATY43_12890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATY43_12895 PF01507 Phosphoadenosine phosphosulfate reductase family ATY43_12915 PF00672 HAMP domain ATY43_12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_12915 PF00512 His Kinase A (phospho-acceptor) domain ATY43_12915 PF01627 Hpt domain ATY43_12915 PF00072 Response regulator receiver domain ATY43_12940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_12940 PF03466 LysR substrate binding domain ATY43_12950 PF10414 Sirohaem synthase dimerisation region ATY43_12950 PF14824 Sirohaem biosynthesis protein central ATY43_12950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY43_12955 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_12970 PF01661 Macro domain ATY43_12975 PF00274 Fructose-bisphosphate aldolase class-I ATY43_12980 PF02887 Pyruvate kinase, alpha/beta domain ATY43_12980 PF00224 Pyruvate kinase, barrel domain ATY43_12990 PF00162 Phosphoglycerate kinase ATY43_13030 PF06628 Catalase-related immune-responsive ATY43_13030 PF18011 C-terminal domain found in long catalases ATY43_13030 PF00199 Catalase ATY43_13055 PF02311 AraC-like ligand binding domain ATY43_13055 PF12833 Helix-turn-helix domain ATY43_13080 PF00326 Prolyl oligopeptidase family ATY43_13080 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY43_13080 PF07676 WD40-like Beta Propeller Repeat ATY43_13105 PF03169 OPT oligopeptide transporter protein ATY43_13120 PF14579 Helix-hairpin-helix motif ATY43_13120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY43_13120 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY43_13120 PF02811 PHP domain ATY43_13135 PF01726 LexA DNA binding domain ATY43_13135 PF00717 Peptidase S24-like ATY43_13205 PF18766 SWI2/SNF2 ATPase ATY43_13205 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY43_13205 PF11867 Domain of unknown function (DUF3387) ATY43_13210 PF01909 Nucleotidyltransferase domain ATY43_13215 PF08780 Nucleotidyltransferase substrate binding protein like ATY43_13220 PF02384 N-6 DNA Methylase ATY43_13240 PF08463 EcoEI R protein C-terminal ATY43_13240 PF00271 Helicase conserved C-terminal domain ATY43_13240 PF04851 Type III restriction enzyme, res subunit ATY43_13240 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY43_13250 PF02384 N-6 DNA Methylase ATY43_13255 PF01420 Type I restriction modification DNA specificity domain ATY43_13305 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_13305 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_13305 PF17871 AAA lid domain ATY43_13305 PF07724 AAA domain (Cdc48 subfamily) ATY43_13375 PF16671 Actin cross-linking domain ATY43_13375 PF04717 Type VI secretion system, phage-baseplate injector ATY43_13405 PF04717 Type VI secretion system, phage-baseplate injector ATY43_13405 PF16671 Actin cross-linking domain ATY43_13420 PF01527 Transposase ATY43_13425 PF13683 Integrase core domain ATY43_13425 PF13276 HTH-like domain ATY43_13430 PF04717 Type VI secretion system, phage-baseplate injector ATY43_13430 PF16671 Actin cross-linking domain ATY43_13480 PF04717 Type VI secretion system, phage-baseplate injector ATY43_13485 PF03781 Sulfatase-modifying factor enzyme 1 ATY43_13535 PF03781 Sulfatase-modifying factor enzyme 1 ATY43_13545 PF03781 Sulfatase-modifying factor enzyme 1 ATY43_13555 PF04717 Type VI secretion system, phage-baseplate injector ATY43_13570 PF04972 BON domain ATY43_13570 PF00691 OmpA family ATY43_13605 PF01527 Transposase ATY43_13610 PF02222 ATP-grasp domain ATY43_13635 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY43_13650 PF00196 Bacterial regulatory proteins, luxR family ATY43_13650 PF00072 Response regulator receiver domain ATY43_13655 PF07730 Histidine kinase ATY43_13675 PF05209 Septum formation inhibitor MinC, N-terminal domain ATY43_13675 PF03775 Septum formation inhibitor MinC, C-terminal domain ATY43_13680 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ATY43_13685 PF03776 Septum formation topological specificity factor MinE ATY43_13695 PF00512 His Kinase A (phospho-acceptor) domain ATY43_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_13695 PF08521 Two-component sensor kinase N-terminal ATY43_13700 PF00072 Response regulator receiver domain ATY43_13700 PF00486 Transcriptional regulatory protein, C terminal ATY43_13705 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ATY43_13715 PF08019 Phosphoethanolamine transferase EptA/EptB ATY43_13715 PF00884 Sulfatase ATY43_13735 PF00664 ABC transporter transmembrane region ATY43_13735 PF00005 ABC transporter ATY43_13735 PF03412 Peptidase C39 family ATY43_13755 PF02347 Glycine cleavage system P-protein ATY43_13790 PF01527 Transposase ATY43_13815 PF01196 Ribosomal protein L17 ATY43_13820 PF01000 RNA polymerase Rpb3/RpoA insert domain ATY43_13820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATY43_13820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATY43_13825 PF00163 Ribosomal protein S4/S9 N-terminal domain ATY43_13825 PF01479 S4 domain ATY43_13830 PF00411 Ribosomal protein S11 ATY43_13835 PF00416 Ribosomal protein S13/S18 ATY43_13840 PF00344 SecY translocase ATY43_13845 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATY43_13850 PF00327 Ribosomal protein L30p/L7e ATY43_13855 PF00333 Ribosomal protein S5, N-terminal domain ATY43_13855 PF03719 Ribosomal protein S5, C-terminal domain ATY43_13860 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATY43_13865 PF00347 Ribosomal protein L6 ATY43_13870 PF00410 Ribosomal protein S8 ATY43_13875 PF00253 Ribosomal protein S14p/S29e ATY43_13880 PF00673 ribosomal L5P family C-terminus ATY43_13880 PF00281 Ribosomal protein L5 ATY43_13885 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATY43_13885 PF00467 KOW motif ATY43_13890 PF00238 Ribosomal protein L14p/L23e ATY43_13895 PF00366 Ribosomal protein S17 ATY43_13900 PF00831 Ribosomal L29 protein ATY43_13905 PF00252 Ribosomal protein L16p/L10e ATY43_13910 PF07650 KH domain ATY43_13910 PF00189 Ribosomal protein S3, C-terminal domain ATY43_13915 PF00237 Ribosomal protein L22p/L17e ATY43_13920 PF00203 Ribosomal protein S19 ATY43_13925 PF00181 Ribosomal Proteins L2, RNA binding domain ATY43_13925 PF03947 Ribosomal Proteins L2, C-terminal domain ATY43_13930 PF00276 Ribosomal protein L23 ATY43_13935 PF00573 Ribosomal protein L4/L1 family ATY43_13940 PF00297 Ribosomal protein L3 ATY43_13945 PF00338 Ribosomal protein S10p/S20e ATY43_13955 PF03143 Elongation factor Tu C-terminal domain ATY43_13955 PF03144 Elongation factor Tu domain 2 ATY43_13955 PF00009 Elongation factor Tu GTP binding domain ATY43_13960 PF00679 Elongation factor G C-terminus ATY43_13960 PF14492 Elongation Factor G, domain II ATY43_13960 PF03764 Elongation factor G, domain IV ATY43_13960 PF00009 Elongation factor Tu GTP binding domain ATY43_13960 PF03144 Elongation factor Tu domain 2 ATY43_13965 PF00177 Ribosomal protein S7p/S5e ATY43_13970 PF00164 Ribosomal protein S12/S23 ATY43_13975 PF04998 RNA polymerase Rpb1, domain 5 ATY43_13975 PF05000 RNA polymerase Rpb1, domain 4 ATY43_13975 PF04983 RNA polymerase Rpb1, domain 3 ATY43_13975 PF00623 RNA polymerase Rpb1, domain 2 ATY43_13975 PF04997 RNA polymerase Rpb1, domain 1 ATY43_13980 PF04560 RNA polymerase Rpb2, domain 7 ATY43_13980 PF00562 RNA polymerase Rpb2, domain 6 ATY43_13980 PF04565 RNA polymerase Rpb2, domain 3 ATY43_13980 PF04561 RNA polymerase Rpb2, domain 2 ATY43_13980 PF04563 RNA polymerase beta subunit ATY43_13980 PF10385 RNA polymerase beta subunit external 1 domain ATY43_13985 PF00542 Ribosomal protein L7/L12 C-terminal domain ATY43_13985 PF16320 Ribosomal protein L7/L12 dimerisation domain ATY43_13990 PF00466 Ribosomal protein L10 ATY43_13995 PF00687 Ribosomal protein L1p/L10e family ATY43_14000 PF00298 Ribosomal protein L11, RNA binding domain ATY43_14000 PF03946 Ribosomal protein L11, N-terminal domain ATY43_14005 PF02357 Transcription termination factor nusG ATY43_14005 PF00467 KOW motif ATY43_14010 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ATY43_14020 PF00009 Elongation factor Tu GTP binding domain ATY43_14020 PF03144 Elongation factor Tu domain 2 ATY43_14020 PF03143 Elongation factor Tu C-terminal domain ATY43_14040 PF06071 Protein of unknown function (DUF933) ATY43_14040 PF01926 50S ribosome-binding GTPase ATY43_14045 PF01195 Peptidyl-tRNA hydrolase ATY43_14050 PF14693 Ribosomal protein TL5, C-terminal domain ATY43_14050 PF01386 Ribosomal L25p family ATY43_14055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATY43_14055 PF14572 Phosphoribosyl synthetase-associated domain ATY43_14065 PF00288 GHMP kinases N terminal domain ATY43_14065 PF08544 GHMP kinases C terminal ATY43_14070 PF03550 Outer membrane lipoprotein LolB ATY43_14080 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATY43_14080 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATY43_14080 PF01488 Shikimate / quinate 5-dehydrogenase ATY43_14085 PF00472 RF-1 domain ATY43_14085 PF03462 PCRF domain ATY43_14095 PF00994 Probable molybdopterin binding domain ATY43_14100 PF03976 Polyphosphate kinase 2 (PPK2) ATY43_14110 PF00708 Acylphosphatase ATY43_14115 PF08534 Redoxin ATY43_14120 PF03631 Virulence factor BrkB ATY43_14125 PF03358 NADPH-dependent FMN reductase ATY43_14140 PF17189 Glycosyl hydrolase family 30 beta sandwich domain ATY43_14140 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain ATY43_14150 PF04073 Aminoacyl-tRNA editing domain ATY43_14155 PF00082 Subtilase family ATY43_14155 PF04151 Bacterial pre-peptidase C-terminal domain ATY43_14160 PF00082 Subtilase family ATY43_14160 PF04151 Bacterial pre-peptidase C-terminal domain ATY43_14170 PF01063 Amino-transferase class IV ATY43_14200 PF02233 NAD(P) transhydrogenase beta subunit ATY43_14205 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY43_14225 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ATY43_14225 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ATY43_14225 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY43_14240 PF00476 DNA polymerase family A ATY43_14240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY43_14240 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY43_14240 PF01612 3'-5' exonuclease ATY43_14245 PF00293 NUDIX domain ATY43_14255 PF00561 alpha/beta hydrolase fold ATY43_14280 PF17827 PrmC N-terminal domain ATY43_14280 PF05175 Methyltransferase small domain ATY43_14285 PF00578 AhpC/TSA family ATY43_14285 PF10417 C-terminal domain of 1-Cys peroxiredoxin ATY43_14290 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_14290 PF13192 Thioredoxin domain ATY43_14295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_14295 PF03466 LysR substrate binding domain ATY43_14300 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY43_14300 PF03449 Transcription elongation factor, N-terminal ATY43_14305 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATY43_14325 PF01625 Peptide methionine sulfoxide reductase ATY43_14345 PF00196 Bacterial regulatory proteins, luxR family ATY43_14345 PF00072 Response regulator receiver domain ATY43_14365 PF00072 Response regulator receiver domain ATY43_14365 PF00512 His Kinase A (phospho-acceptor) domain ATY43_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_14365 PF00672 HAMP domain ATY43_14365 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY43_14365 PF01627 Hpt domain ATY43_14370 PF00072 Response regulator receiver domain ATY43_14370 PF00990 Diguanylate cyclase, GGDEF domain ATY43_14390 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY43_14390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ATY43_14400 PF13936 Helix-turn-helix domain ATY43_14400 PF00665 Integrase core domain ATY43_14410 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_14455 PF01728 FtsJ-like methyltransferase ATY43_14455 PF18125 RlmM ferredoxin-like domain ATY43_14460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY43_14460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY43_14465 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY43_14485 PF00378 Enoyl-CoA hydratase/isomerase ATY43_14490 PF00171 Aldehyde dehydrogenase family ATY43_14495 PF13193 AMP-binding enzyme C-terminal domain ATY43_14495 PF00501 AMP-binding enzyme ATY43_14500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_14500 PF03466 LysR substrate binding domain ATY43_14510 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY43_14540 PF01494 FAD binding domain ATY43_14545 PF01494 FAD binding domain ATY43_14555 PF01923 Cobalamin adenosyltransferase ATY43_14560 PF00850 Histone deacetylase domain ATY43_14565 PF04453 LPS transport system D ATY43_14565 PF03968 OstA-like protein ATY43_14570 PF00639 PPIC-type PPIASE domain ATY43_14570 PF09312 SurA N-terminal domain ATY43_14575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ATY43_14585 PF00398 Ribosomal RNA adenine dimethylase ATY43_14590 PF04379 ApaG domain ATY43_14595 PF00149 Calcineurin-like phosphoesterase ATY43_14600 PF00186 Dihydrofolate reductase ATY43_14610 PF00303 Thymidylate synthase ATY43_14615 PF01790 Prolipoprotein diacylglyceryl transferase ATY43_14635 PF01219 Prokaryotic diacylglycerol kinase ATY43_14650 PF00512 His Kinase A (phospho-acceptor) domain ATY43_14650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_14650 PF08521 Two-component sensor kinase N-terminal ATY43_14655 PF00486 Transcriptional regulatory protein, C terminal ATY43_14655 PF00072 Response regulator receiver domain ATY43_14660 PF13472 GDSL-like Lipase/Acylhydrolase family ATY43_14665 PF00005 ABC transporter ATY43_14675 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ATY43_14685 PF00005 ABC transporter ATY43_14730 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_14745 PF00248 Aldo/keto reductase family ATY43_14755 PF01773 Na+ dependent nucleoside transporter N-terminus ATY43_14755 PF07662 Na+ dependent nucleoside transporter C-terminus ATY43_14755 PF07670 Nucleoside recognition ATY43_14760 PF00294 pfkB family carbohydrate kinase ATY43_14775 PF01207 Dihydrouridine synthase (Dus) ATY43_14780 PF13649 Methyltransferase domain ATY43_14790 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATY43_14790 PF02772 S-adenosylmethionine synthetase, central domain ATY43_14790 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATY43_14795 PF00328 Histidine phosphatase superfamily (branch 2) ATY43_14815 PF00311 Phosphoenolpyruvate carboxylase ATY43_14825 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ATY43_14825 PF05221 S-adenosyl-L-homocysteine hydrolase ATY43_14830 PF13649 Methyltransferase domain ATY43_14865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY43_14880 PF09286 Pro-kumamolisin, activation domain ATY43_14880 PF00082 Subtilase family ATY43_14885 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_14885 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_14885 PF16197 Ketoacyl-synthetase C-terminal extension ATY43_14885 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_14885 PF08659 KR domain ATY43_14885 PF00550 Phosphopantetheine attachment site ATY43_14885 PF14765 Polyketide synthase dehydratase ATY43_14885 PF00107 Zinc-binding dehydrogenase ATY43_14885 PF00698 Acyl transferase domain ATY43_14895 PF02219 Methylenetetrahydrofolate reductase ATY43_14920 PF00293 NUDIX domain ATY43_14930 PF07516 SecA Wing and Scaffold domain ATY43_14930 PF01043 SecA preprotein cross-linking domain ATY43_14930 PF07517 SecA DEAD-like domain ATY43_14930 PF02810 SEC-C motif ATY43_14935 PF01551 Peptidase family M23 ATY43_14935 PF01476 LysM domain ATY43_14945 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ATY43_14950 PF00091 Tubulin/FtsZ family, GTPase domain ATY43_14950 PF12327 FtsZ family, C-terminal domain ATY43_14955 PF02491 SHS2 domain inserted in FTSA ATY43_14960 PF08478 POTRA domain, FtsQ-type ATY43_14960 PF03799 Cell division protein FtsQ ATY43_14965 PF07478 D-ala D-ala ligase C-terminus ATY43_14965 PF01820 D-ala D-ala ligase N-terminus ATY43_14970 PF08245 Mur ligase middle domain ATY43_14970 PF02875 Mur ligase family, glutamate ligase domain ATY43_14970 PF01225 Mur ligase family, catalytic domain ATY43_14975 PF04101 Glycosyltransferase family 28 C-terminal domain ATY43_14975 PF03033 Glycosyltransferase family 28 N-terminal domain ATY43_14980 PF01098 Cell cycle protein ATY43_14985 PF00953 Glycosyl transferase family 4 ATY43_14990 PF01225 Mur ligase family, catalytic domain ATY43_14990 PF02875 Mur ligase family, glutamate ligase domain ATY43_14990 PF08245 Mur ligase middle domain ATY43_14995 PF02875 Mur ligase family, glutamate ligase domain ATY43_14995 PF01225 Mur ligase family, catalytic domain ATY43_14995 PF08245 Mur ligase middle domain ATY43_15000 PF00905 Penicillin binding protein transpeptidase domain ATY43_15000 PF03717 Penicillin-binding Protein dimerisation domain ATY43_15005 PF04999 Cell division protein FtsL ATY43_15010 PF01795 MraW methylase family ATY43_15015 PF02381 MraZ protein, putative antitoxin-like ATY43_15035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY43_15045 PF02021 Uncharacterised protein family UPF0102 ATY43_15050 PF04307 LexA-binding, inner membrane-associated putative hydrolase ATY43_15055 PF01565 FAD binding domain ATY43_15055 PF02913 FAD linked oxidases, C-terminal domain ATY43_15060 PF00486 Transcriptional regulatory protein, C terminal ATY43_15060 PF00072 Response regulator receiver domain ATY43_15065 PF02702 Osmosensitive K+ channel His kinase sensor domain ATY43_15065 PF00512 His Kinase A (phospho-acceptor) domain ATY43_15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_15065 PF13492 GAF domain ATY43_15065 PF13493 Domain of unknown function (DUF4118) ATY43_15070 PF02669 K+-transporting ATPase, c chain ATY43_15080 PF03814 Potassium-transporting ATPase A subunit ATY43_15105 PF00586 AIR synthase related protein, N-terminal domain ATY43_15105 PF02769 AIR synthase related protein, C-terminal domain ATY43_15110 PF01029 NusB family ATY43_15115 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATY43_15120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATY43_15120 PF00925 GTP cyclohydrolase II ATY43_15125 PF00677 Lumazine binding domain ATY43_15135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATY43_15135 PF01872 RibD C-terminal domain ATY43_15145 PF03477 ATP cone domain ATY43_15155 PF00464 Serine hydroxymethyltransferase ATY43_15175 PF12848 ABC transporter ATY43_15175 PF00005 ABC transporter ATY43_15190 PF05598 Transposase domain (DUF772) ATY43_15195 PF00756 Putative esterase ATY43_15205 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_15205 PF00107 Zinc-binding dehydrogenase ATY43_15210 PF02583 Metal-sensitive transcriptional repressor ATY43_15225 PF00486 Transcriptional regulatory protein, C terminal ATY43_15225 PF00072 Response regulator receiver domain ATY43_15230 PF00512 His Kinase A (phospho-acceptor) domain ATY43_15230 PF16527 Two-component sensor protein CpxA, periplasmic domain ATY43_15230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_15230 PF00672 HAMP domain ATY43_15265 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATY43_15275 PF01926 50S ribosome-binding GTPase ATY43_15280 PF00034 Cytochrome c ATY43_15300 PF02028 BCCT, betaine/carnitine/choline family transporter ATY43_15310 PF01527 Transposase ATY43_15315 PF01609 Transposase DDE domain ATY43_15315 PF05598 Transposase domain (DUF772) ATY43_15320 PF13291 ACT domain ATY43_15320 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_15335 PF01527 Transposase ATY43_15345 PF05598 Transposase domain (DUF772) ATY43_15375 PF01966 HD domain ATY43_15375 PF01743 Poly A polymerase head domain ATY43_15375 PF12627 Probable RNA and SrmB- binding site of polymerase A ATY43_15390 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_15420 PF14883 Hypothetical glycosyl hydrolase family 13 ATY43_15420 PF01522 Polysaccharide deacetylase ATY43_15425 PF00535 Glycosyl transferase family 2 ATY43_15435 PF01979 Amidohydrolase family ATY43_15440 PF01380 SIS domain ATY43_15445 PF00356 Bacterial regulatory proteins, lacI family ATY43_15450 PF07690 Major Facilitator Superfamily ATY43_15480 PF01527 Transposase ATY43_15490 PF13683 Integrase core domain ATY43_15490 PF13276 HTH-like domain ATY43_15510 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY43_15515 PF00512 His Kinase A (phospho-acceptor) domain ATY43_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_15520 PF00072 Response regulator receiver domain ATY43_15525 PF00360 Phytochrome region ATY43_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_15525 PF00512 His Kinase A (phospho-acceptor) domain ATY43_15525 PF08446 PAS fold ATY43_15525 PF01590 GAF domain ATY43_15530 PF04972 BON domain ATY43_15535 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY43_15535 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY43_15540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY43_15540 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ATY43_15580 PF00293 NUDIX domain ATY43_15580 PF01467 Cytidylyltransferase-like ATY43_15590 PF03572 Peptidase family S41 ATY43_15590 PF00595 PDZ domain ATY43_15590 PF11818 C-terminal domain of tail specific protease (DUF3340) ATY43_15590 PF17804 Tail specific protease N-terminal domain ATY43_15595 PF04055 Radical SAM superfamily ATY43_15595 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ATY43_15600 PF03099 Biotin/lipoate A/B protein ligase family ATY43_15605 PF04359 Protein of unknown function (DUF493) ATY43_15615 PF07943 Penicillin-binding protein 5, C-terminal domain ATY43_15615 PF00768 D-alanyl-D-alanine carboxypeptidase ATY43_15625 PF05036 Sporulation related domain ATY43_15625 PF03330 Lytic transglycolase ATY43_15630 PF13406 Transglycosylase SLT domain ATY43_15640 PF01609 Transposase DDE domain ATY43_15640 PF05598 Transposase domain (DUF772) ATY43_15645 PF05598 Transposase domain (DUF772) ATY43_15650 PF16671 Actin cross-linking domain ATY43_15650 PF04717 Type VI secretion system, phage-baseplate injector ATY43_15685 PF01098 Cell cycle protein ATY43_15690 PF03717 Penicillin-binding Protein dimerisation domain ATY43_15690 PF00905 Penicillin binding protein transpeptidase domain ATY43_15700 PF04085 rod shape-determining protein MreC ATY43_15710 PF00294 pfkB family carbohydrate kinase ATY43_15715 PF05598 Transposase domain (DUF772) ATY43_15715 PF01609 Transposase DDE domain ATY43_15745 PF13673 Acetyltransferase (GNAT) domain ATY43_15760 PF13533 Biotin-lipoyl like ATY43_15770 PF01209 ubiE/COQ5 methyltransferase family ATY43_15775 PF00990 Diguanylate cyclase, GGDEF domain ATY43_15775 PF17152 Periplasmic sensor domain ATY43_15780 PF01433 Peptidase family M1 domain ATY43_15780 PF11838 ERAP1-like C-terminal domain ATY43_15795 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_15795 PF07724 AAA domain (Cdc48 subfamily) ATY43_15795 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_15800 PF00227 Proteasome subunit ATY43_15810 PF00589 Phage integrase family ATY43_15810 PF02899 Phage integrase, N-terminal SAM-like domain ATY43_15820 PF01678 Diaminopimelate epimerase ATY43_15835 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY43_15835 PF00326 Prolyl oligopeptidase family ATY43_15840 PF00155 Aminotransferase class I and II ATY43_15855 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY43_15855 PF00326 Prolyl oligopeptidase family ATY43_15880 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATY43_15880 PF03900 Porphobilinogen deaminase, C-terminal domain ATY43_15885 PF00072 Response regulator receiver domain ATY43_15885 PF04397 LytTr DNA-binding domain ATY43_15890 PF07694 5TMR of 5TMR-LYT ATY43_15890 PF06580 Histidine kinase ATY43_15900 PF13632 Glycosyl transferase family group 2 ATY43_15910 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_15930 PF08448 PAS fold ATY43_15930 PF00990 Diguanylate cyclase, GGDEF domain ATY43_15940 PF00916 Sulfate permease family ATY43_15940 PF01740 STAS domain ATY43_15945 PF00553 Cellulose binding domain ATY43_15945 PF00150 Cellulase (glycosyl hydrolase family 5) ATY43_15955 PF02203 Tar ligand binding domain homologue ATY43_15955 PF00672 HAMP domain ATY43_15955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_15965 PF00563 EAL domain ATY43_15965 PF00990 Diguanylate cyclase, GGDEF domain ATY43_15965 PF03707 Bacterial signalling protein N terminal repeat ATY43_15990 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_16010 PF01204 Trehalase ATY43_16030 PF01544 CorA-like Mg2+ transporter protein ATY43_16040 PF00324 Amino acid permease ATY43_16045 PF01341 Glycosyl hydrolases family 6 ATY43_16045 PF00553 Cellulose binding domain ATY43_16045 PF00041 Fibronectin type III domain ATY43_16050 PF03330 Lytic transglycolase ATY43_16055 PF00892 EamA-like transporter family ATY43_16080 PF07759 Protein of unknown function (DUF1615) ATY43_16125 PF00106 short chain dehydrogenase ATY43_16140 PF01527 Transposase ATY43_16150 PF04715 Anthranilate synthase component I, N terminal region ATY43_16150 PF00425 chorismate binding enzyme ATY43_16155 PF00781 Diacylglycerol kinase catalytic domain ATY43_16160 PF00583 Acetyltransferase (GNAT) family ATY43_16165 PF00834 Ribulose-phosphate 3 epimerase family ATY43_16170 PF05099 Tellurite resistance protein TerB ATY43_16170 PF00226 DnaJ domain ATY43_16175 PF01259 SAICAR synthetase ATY43_16190 PF01483 Proprotein convertase P-domain ATY43_16190 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY43_16190 PF01447 Thermolysin metallopeptidase, catalytic domain ATY43_16190 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY43_16195 PF01447 Thermolysin metallopeptidase, catalytic domain ATY43_16195 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY43_16195 PF01483 Proprotein convertase P-domain ATY43_16195 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY43_16200 PF01447 Thermolysin metallopeptidase, catalytic domain ATY43_16200 PF03413 Peptidase propeptide and YPEB domain ATY43_16200 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY43_16200 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY43_16215 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY43_16215 PF13244 Domain of unknown function (DUF4040) ATY43_16215 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ATY43_16215 PF00361 Proton-conducting membrane transporter ATY43_16220 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY43_16225 PF00361 Proton-conducting membrane transporter ATY43_16235 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ATY43_16240 PF03334 Na+/H+ antiporter subunit ATY43_16245 PF04209 homogentisate 1,2-dioxygenase ATY43_16250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY43_16255 PF01047 MarR family ATY43_16265 PF00854 POT family ATY43_16270 PF03301 Tryptophan 2,3-dioxygenase ATY43_16310 PF02803 Thiolase, C-terminal domain ATY43_16310 PF00108 Thiolase, N-terminal domain ATY43_16360 PF01609 Transposase DDE domain ATY43_16360 PF05598 Transposase domain (DUF772) ATY43_16395 PF01427 D-ala-D-ala dipeptidase ATY43_16400 PF05598 Transposase domain (DUF772) ATY43_16400 PF01609 Transposase DDE domain ATY43_16405 PF01510 N-acetylmuramoyl-L-alanine amidase ATY43_16415 PF13378 Enolase C-terminal domain-like ATY43_16415 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY43_16445 PF13520 Amino acid permease ATY43_16455 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_16475 PF05360 yiaA/B two helix domain ATY43_16485 PF07995 Glucose / Sorbosone dehydrogenase ATY43_16535 PF13936 Helix-turn-helix domain ATY43_16535 PF00665 Integrase core domain ATY43_16540 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY43_16540 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY43_16540 PF14310 Fibronectin type III-like domain ATY43_16545 PF02152 Dihydroneopterin aldolase ATY43_16550 PF00814 Glycoprotease family ATY43_16555 PF01165 Ribosomal protein S21 ATY43_16560 PF09424 Yqey-like protein ATY43_16575 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_16595 PF01609 Transposase DDE domain ATY43_16595 PF05598 Transposase domain (DUF772) ATY43_16625 PF00672 HAMP domain ATY43_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_16625 PF00512 His Kinase A (phospho-acceptor) domain ATY43_16635 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ATY43_16645 PF00271 Helicase conserved C-terminal domain ATY43_16645 PF03461 TRCF domain ATY43_16645 PF17757 UvrB interaction domain ATY43_16645 PF00270 DEAD/DEAH box helicase ATY43_16645 PF02559 CarD-like/TRCF domain ATY43_16655 PF01584 CheW-like domain ATY43_16655 PF02895 Signal transducing histidine kinase, homodimeric domain ATY43_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_16655 PF01627 Hpt domain ATY43_16655 PF09078 CheY binding ATY43_16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY43_16660 PF02203 Tar ligand binding domain homologue ATY43_16660 PF00672 HAMP domain ATY43_16665 PF01584 CheW-like domain ATY43_16670 PF00990 Diguanylate cyclase, GGDEF domain ATY43_16670 PF13426 PAS domain ATY43_16670 PF00563 EAL domain ATY43_16675 PF03705 CheR methyltransferase, all-alpha domain ATY43_16675 PF01739 CheR methyltransferase, SAM binding domain ATY43_16680 PF00072 Response regulator receiver domain ATY43_16680 PF01339 CheB methylesterase ATY43_16690 PF05649 Peptidase family M13 ATY43_16690 PF01431 Peptidase family M13 ATY43_16705 PF00300 Histidine phosphatase superfamily (branch 1) ATY43_16710 PF04493 Endonuclease V ATY43_16720 PF05726 Pirin C-terminal cupin domain ATY43_16720 PF02678 Pirin ATY43_16760 PF04717 Type VI secretion system, phage-baseplate injector ATY43_16770 PF01609 Transposase DDE domain ATY43_16770 PF05598 Transposase domain (DUF772) ATY43_16790 PF04717 Type VI secretion system, phage-baseplate injector ATY43_16815 PF02678 Pirin ATY43_16815 PF05726 Pirin C-terminal cupin domain ATY43_16820 PF13722 5TM C-terminal transporter carbon starvation CstA ATY43_16820 PF02554 Carbon starvation protein CstA ATY43_16825 PF04328 Selenoprotein, putative ATY43_16855 PF16197 Ketoacyl-synthetase C-terminal extension ATY43_16855 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_16855 PF00107 Zinc-binding dehydrogenase ATY43_16855 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_16855 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_16855 PF08659 KR domain ATY43_16855 PF00550 Phosphopantetheine attachment site ATY43_16855 PF14765 Polyketide synthase dehydratase ATY43_16855 PF00698 Acyl transferase domain ATY43_16860 PF00990 Diguanylate cyclase, GGDEF domain ATY43_16860 PF00563 EAL domain ATY43_16860 PF00360 Phytochrome region ATY43_16860 PF01590 GAF domain ATY43_16870 PF00436 Single-strand binding protein family ATY43_16875 PF00348 Polyprenyl synthetase ATY43_16890 PF08245 Mur ligase middle domain ATY43_16905 PF00696 Amino acid kinase family ATY43_16905 PF01842 ACT domain ATY43_16915 PF02567 Phenazine biosynthesis-like protein ATY43_16920 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_16935 PF02566 OsmC-like protein ATY43_16945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY43_16945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY43_16950 PF03652 Holliday junction resolvase ATY43_16955 PF02622 Uncharacterized ACR, COG1678 ATY43_16970 PF13302 Acetyltransferase (GNAT) domain ATY43_16970 PF00958 GMP synthase C terminal domain ATY43_16970 PF00117 Glutamine amidotransferase class-I ATY43_16970 PF03352 Methyladenine glycosylase ATY43_16970 PF13673 Acetyltransferase (GNAT) domain ATY43_16985 PF00437 Type II/IV secretion system protein ATY43_16990 PF00437 Type II/IV secretion system protein ATY43_16995 PF01168 Alanine racemase, N-terminal domain ATY43_17000 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATY43_17000 PF03807 NADP oxidoreductase coenzyme F420-dependent ATY43_17055 PF02082 Transcriptional regulator ATY43_17060 PF01458 Uncharacterized protein family (UPF0051) ATY43_17065 PF00005 ABC transporter ATY43_17070 PF01458 Uncharacterized protein family (UPF0051) ATY43_17075 PF00266 Aminotransferase class-V ATY43_17085 PF00355 Rieske [2Fe-2S] domain ATY43_17090 PF05598 Transposase domain (DUF772) ATY43_17090 PF01609 Transposase DDE domain ATY43_17095 PF01527 Transposase ATY43_17100 PF13276 HTH-like domain ATY43_17100 PF13683 Integrase core domain ATY43_17115 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY43_17130 PF00872 Transposase, Mutator family ATY43_17140 PF01527 Transposase ATY43_17145 PF13276 HTH-like domain ATY43_17165 PF00183 Hsp90 protein ATY43_17165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_17170 PF12833 Helix-turn-helix domain ATY43_17190 PF13472 GDSL-like Lipase/Acylhydrolase family ATY43_17190 PF07859 alpha/beta hydrolase fold ATY43_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_17200 PF03466 LysR substrate binding domain ATY43_17215 PF00005 ABC transporter ATY43_17215 PF12848 ABC transporter ATY43_17245 PF07715 TonB-dependent Receptor Plug Domain ATY43_17245 PF00593 TonB dependent receptor ATY43_17250 PF00593 TonB dependent receptor ATY43_17250 PF07715 TonB-dependent Receptor Plug Domain ATY43_17260 PF02254 TrkA-N domain ATY43_17260 PF00999 Sodium/hydrogen exchanger family ATY43_17265 PF13276 HTH-like domain ATY43_17265 PF13683 Integrase core domain ATY43_17275 PF07660 Secretin and TonB N terminus short domain ATY43_17275 PF00593 TonB dependent receptor ATY43_17275 PF07715 TonB-dependent Receptor Plug Domain ATY43_17285 PF06276 Ferric iron reductase FhuF-like transporter ATY43_17285 PF04183 IucA / IucC family ATY43_17290 PF07690 Major Facilitator Superfamily ATY43_17300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATY43_17300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY43_17310 PF02654 Cobalamin-5-phosphate synthase ATY43_17320 PF02277 Phosphoribosyltransferase ATY43_17325 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ATY43_17335 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ATY43_17335 PF12557 Cob(I)alamin adenosyltransferase N terminal ATY43_17360 PF07715 TonB-dependent Receptor Plug Domain ATY43_17360 PF00593 TonB dependent receptor ATY43_17375 PF01527 Transposase ATY43_17390 PF07724 AAA domain (Cdc48 subfamily) ATY43_17390 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_17390 PF17871 AAA lid domain ATY43_17390 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_17390 PF02861 Clp amino terminal domain, pathogenicity island component ATY43_17395 PF01541 GIY-YIG catalytic domain ATY43_17430 PF01479 S4 domain ATY43_17435 PF01554 MatE ATY43_17445 PF01245 Ribosomal protein L19 ATY43_17450 PF01746 tRNA (Guanine-1)-methyltransferase ATY43_17455 PF01782 RimM N-terminal domain ATY43_17455 PF05239 PRC-barrel domain ATY43_17460 PF00886 Ribosomal protein S16 ATY43_17470 PF03060 Nitronate monooxygenase ATY43_17485 PF02978 Signal peptide binding domain ATY43_17485 PF00448 SRP54-type protein, GTPase domain ATY43_17485 PF02881 SRP54-type protein, helical bundle domain ATY43_17495 PF01578 Cytochrome C assembly protein ATY43_17500 PF01263 Aldose 1-epimerase ATY43_17505 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ATY43_17540 PF01527 Transposase ATY43_17545 PF13333 Integrase core domain ATY43_17545 PF00665 Integrase core domain ATY43_17545 PF13276 HTH-like domain ATY43_17555 PF01546 Peptidase family M20/M25/M40 ATY43_17555 PF07687 Peptidase dimerisation domain ATY43_17570 PF01636 Phosphotransferase enzyme family ATY43_17575 PF00483 Nucleotidyl transferase ATY43_17580 PF00308 Bacterial dnaA protein ATY43_17585 PF01594 AI-2E family transporter ATY43_17595 PF00586 AIR synthase related protein, N-terminal domain ATY43_17595 PF02769 AIR synthase related protein, C-terminal domain ATY43_17610 PF00551 Formyl transferase ATY43_17630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY43_17635 PF01722 BolA-like protein ATY43_17640 PF01380 SIS domain ATY43_17640 PF00571 CBS domain ATY43_17655 PF03968 OstA-like protein ATY43_17660 PF00005 ABC transporter ATY43_17665 PF04552 Sigma-54, DNA binding domain ATY43_17665 PF04963 Sigma-54 factor, core binding domain ATY43_17665 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY43_17670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ATY43_17675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY43_17680 PF02603 HPr Serine kinase N terminus ATY43_17680 PF07475 HPr Serine kinase C-terminal domain ATY43_17685 PF03668 P-loop ATPase protein family ATY43_17695 PF00381 PTS HPr component phosphorylation site ATY43_17700 PF02896 PEP-utilising enzyme, TIM barrel domain ATY43_17700 PF00391 PEP-utilising enzyme, mobile domain ATY43_17700 PF05524 PEP-utilising enzyme, N-terminal ATY43_17705 PF01769 Divalent cation transporter ATY43_17705 PF03448 MgtE intracellular N domain ATY43_17705 PF00571 CBS domain ATY43_17710 PF00756 Putative esterase ATY43_17715 PF02322 Cytochrome bd terminal oxidase subunit II ATY43_17720 PF01654 Cytochrome bd terminal oxidase subunit I ATY43_17730 PF00324 Amino acid permease ATY43_17740 PF00561 alpha/beta hydrolase fold ATY43_17745 PF00196 Bacterial regulatory proteins, luxR family ATY43_17750 PF00324 Amino acid permease ATY43_17770 PF12706 Beta-lactamase superfamily domain ATY43_17805 PF00376 MerR family regulatory protein ATY43_17805 PF09278 MerR, DNA binding ATY43_17830 PF03738 Glutathionylspermidine synthase preATP-grasp ATY43_17855 PF04012 PspA/IM30 family ATY43_17865 PF01243 Pyridoxamine 5'-phosphate oxidase ATY43_17865 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATY43_17870 PF01202 Shikimate kinase ATY43_17875 PF01761 3-dehydroquinate synthase ATY43_17885 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATY43_17995 PF00202 Aminotransferase class-III ATY43_18005 PF00127 Copper binding proteins, plastocyanin/azurin family ATY43_18015 PF00155 Aminotransferase class I and II ATY43_18030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATY43_18030 PF00034 Cytochrome c ATY43_18035 PF01593 Flavin containing amine oxidoreductase ATY43_18050 PF00202 Aminotransferase class-III ATY43_18055 PF00027 Cyclic nucleotide-binding domain ATY43_18055 PF00520 Ion transport protein ATY43_18090 PF05598 Transposase domain (DUF772) ATY43_18090 PF01609 Transposase DDE domain ATY43_18095 PF18030 RimK PreATP-grasp domain ATY43_18095 PF08443 RimK-like ATP-grasp domain ATY43_18115 PF00072 Response regulator receiver domain ATY43_18115 PF00486 Transcriptional regulatory protein, C terminal ATY43_18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_18120 PF00512 His Kinase A (phospho-acceptor) domain ATY43_18120 PF00672 HAMP domain ATY43_18135 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_18140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATY43_18140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATY43_18185 PF04273 Putative phosphatase (DUF442) ATY43_18185 PF00753 Metallo-beta-lactamase superfamily ATY43_18195 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_18200 PF03459 TOBE domain ATY43_18200 PF00005 ABC transporter ATY43_18220 PF00512 His Kinase A (phospho-acceptor) domain ATY43_18220 PF08521 Two-component sensor kinase N-terminal ATY43_18220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_18225 PF00072 Response regulator receiver domain ATY43_18225 PF00486 Transcriptional regulatory protein, C terminal ATY43_18245 PF00501 AMP-binding enzyme ATY43_18270 PF01476 LysM domain ATY43_18270 PF03734 L,D-transpeptidase catalytic domain ATY43_18275 PF04225 Opacity-associated protein A LysM-like domain ATY43_18275 PF01551 Peptidase family M23 ATY43_18280 PF00593 TonB dependent receptor ATY43_18280 PF07715 TonB-dependent Receptor Plug Domain ATY43_18285 PF02779 Transketolase, pyrimidine binding domain ATY43_18285 PF02780 Transketolase, C-terminal domain ATY43_18285 PF00456 Transketolase, thiamine diphosphate binding domain ATY43_18290 PF00375 Sodium:dicarboxylate symporter family ATY43_18310 PF00092 von Willebrand factor type A domain ATY43_18310 PF07584 Aerotolerance regulator N-terminal ATY43_18330 PF17863 AAA lid domain ATY43_18330 PF07726 ATPase family associated with various cellular activities (AAA) ATY43_18360 PF11741 AMIN domain ATY43_18360 PF07660 Secretin and TonB N terminus short domain ATY43_18360 PF00263 Bacterial type II and III secretion system protein ATY43_18360 PF03958 Bacterial type II/III secretion system short domain ATY43_18385 PF00912 Transglycosylase ATY43_18385 PF17092 Penicillin-binding protein OB-like domain ATY43_18385 PF00905 Penicillin binding protein transpeptidase domain ATY43_18400 PF00285 Citrate synthase, C-terminal domain ATY43_18405 PF01197 Ribosomal protein L31 ATY43_18410 PF01156 Inosine-uridine preferring nucleoside hydrolase ATY43_18415 PF17191 RecG wedge domain ATY43_18415 PF00271 Helicase conserved C-terminal domain ATY43_18415 PF00270 DEAD/DEAH box helicase ATY43_18420 PF01042 Endoribonuclease L-PSP ATY43_18425 PF02824 TGS domain ATY43_18425 PF13291 ACT domain ATY43_18425 PF04607 Region found in RelA / SpoT proteins ATY43_18430 PF01192 RNA polymerase Rpb6 ATY43_18450 PF00625 Guanylate kinase ATY43_18455 PF08340 Domain of unknown function (DUF1732) ATY43_18455 PF03755 YicC-like family, N-terminal region ATY43_18460 PF03725 3' exoribonuclease family, domain 2 ATY43_18460 PF01138 3' exoribonuclease family, domain 1 ATY43_18470 PF01725 Ham1 family ATY43_18475 PF06969 HemN C-terminal domain ATY43_18475 PF04055 Radical SAM superfamily ATY43_18490 PF00557 Metallopeptidase family M24 ATY43_18505 PF00557 Metallopeptidase family M24 ATY43_18505 PF05195 Aminopeptidase P, N-terminal domain ATY43_18510 PF03695 Uncharacterised protein family (UPF0149) ATY43_18520 PF05164 Cell division protein ZapA ATY43_18530 PF01812 5-formyltetrahydrofolate cyclo-ligase family ATY43_18540 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ATY43_18550 PF13369 Transglutaminase-like superfamily ATY43_18555 PF00301 Rubredoxin ATY43_18560 PF02581 Thiamine monophosphate synthase ATY43_18575 PF01527 Transposase ATY43_18585 PF13276 HTH-like domain ATY43_18585 PF13683 Integrase core domain ATY43_18590 PF01527 Transposase ATY43_18600 PF00390 Malic enzyme, N-terminal domain ATY43_18600 PF03949 Malic enzyme, NAD binding domain ATY43_18600 PF01515 Phosphate acetyl/butaryl transferase ATY43_18605 PF00375 Sodium:dicarboxylate symporter family ATY43_18620 PF00512 His Kinase A (phospho-acceptor) domain ATY43_18620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_18625 PF07690 Major Facilitator Superfamily ATY43_18635 PF03466 LysR substrate binding domain ATY43_18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_18650 PF00196 Bacterial regulatory proteins, luxR family ATY43_18650 PF00072 Response regulator receiver domain ATY43_18660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_18660 PF08521 Two-component sensor kinase N-terminal ATY43_18660 PF00512 His Kinase A (phospho-acceptor) domain ATY43_18665 PF00072 Response regulator receiver domain ATY43_18665 PF00486 Transcriptional regulatory protein, C terminal ATY43_18675 PF03600 Citrate transporter ATY43_18680 PF00106 short chain dehydrogenase ATY43_18685 PF00356 Bacterial regulatory proteins, lacI family ATY43_18705 PF00128 Alpha amylase, catalytic domain ATY43_18720 PF03193 RsgA GTPase ATY43_18745 PF01522 Polysaccharide deacetylase ATY43_18750 PF00462 Glutaredoxin ATY43_18795 PF01327 Polypeptide deformylase ATY43_18800 PF03960 ArsC family ATY43_18815 PF07726 ATPase family associated with various cellular activities (AAA) ATY43_18815 PF17863 AAA lid domain ATY43_18825 PF01841 Transglutaminase-like superfamily ATY43_18825 PF13559 Domain of unknown function (DUF4129) ATY43_18825 PF11992 Domain of unknown function (DUF3488) ATY43_18835 PF01230 HIT domain ATY43_18840 PF02132 RecR protein ATY43_18840 PF13662 Toprim domain ATY43_18845 PF02575 YbaB/EbfC DNA-binding family ATY43_18855 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ATY43_18855 PF12170 DNA polymerase III tau subunit V interacting with alpha ATY43_18855 PF12169 DNA polymerase III subunits gamma and tau domain III ATY43_18870 PF02391 MoaE protein ATY43_18875 PF02597 ThiS family ATY43_18880 PF01967 MoaC family ATY43_18890 PF04055 Radical SAM superfamily ATY43_18890 PF06463 Molybdenum Cofactor Synthesis C ATY43_18895 PF00753 Metallo-beta-lactamase superfamily ATY43_18895 PF12706 Beta-lactamase superfamily domain ATY43_18905 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATY43_18915 PF13356 Arm DNA-binding domain ATY43_18915 PF00589 Phage integrase family ATY43_19010 PF00929 Exonuclease ATY43_19015 PF00075 RNase H ATY43_19025 PF00753 Metallo-beta-lactamase superfamily ATY43_19025 PF16123 Hydroxyacylglutathione hydrolase C-terminus ATY43_19030 PF01476 LysM domain ATY43_19030 PF05257 CHAP domain ATY43_19055 PF00216 Bacterial DNA-binding protein ATY43_19060 PF05362 Lon protease (S16) C-terminal proteolytic domain ATY43_19060 PF00004 ATPase family associated with various cellular activities (AAA) ATY43_19060 PF02190 ATP-dependent protease La (LON) substrate-binding domain ATY43_19065 PF06689 ClpX C4-type zinc finger ATY43_19065 PF07724 AAA domain (Cdc48 subfamily) ATY43_19065 PF10431 C-terminal, D2-small domain, of ClpB protein ATY43_19070 PF00574 Clp protease ATY43_19075 PF05698 Bacterial trigger factor protein (TF) C-terminus ATY43_19075 PF05697 Bacterial trigger factor protein (TF) ATY43_19100 PF01527 Transposase ATY43_19130 PF18324 Hypothetical protein TT1725 ATY43_19130 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY43_19155 PF00462 Glutaredoxin ATY43_19160 PF13181 Tetratricopeptide repeat ATY43_19160 PF01435 Peptidase family M48 ATY43_19165 PF00072 Response regulator receiver domain ATY43_19165 PF00486 Transcriptional regulatory protein, C terminal ATY43_19170 PF11808 Phosphate regulon sensor protein PhoR ATY43_19170 PF00989 PAS fold ATY43_19170 PF00512 His Kinase A (phospho-acceptor) domain ATY43_19170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_19175 PF17941 Polyphosphate kinase C-terminal domain 1 ATY43_19175 PF13090 Polyphosphate kinase C-terminal domain 2 ATY43_19175 PF02503 Polyphosphate kinase middle domain ATY43_19175 PF13089 Polyphosphate kinase N-terminal domain ATY43_19180 PF02541 Ppx/GppA phosphatase family ATY43_19185 PF13439 Glycosyltransferase Family 4 ATY43_19185 PF00534 Glycosyl transferases group 1 ATY43_19190 PF01569 PAP2 superfamily ATY43_19195 PF00149 Calcineurin-like phosphoesterase ATY43_19210 PF04305 Protein of unknown function (DUF455) ATY43_19215 PF00156 Phosphoribosyl transferase domain ATY43_19230 PF02875 Mur ligase family, glutamate ligase domain ATY43_19230 PF08245 Mur ligase middle domain ATY43_19240 PF00300 Histidine phosphatase superfamily (branch 1) ATY43_19245 PF10459 Peptidase S46 ATY43_19250 PF04185 Phosphoesterase family ATY43_19250 PF05506 Domain of unknown function (DUF756) ATY43_19260 PF00107 Zinc-binding dehydrogenase ATY43_19260 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_19270 PF17850 CysA C-terminal regulatory domain ATY43_19270 PF12857 TOBE-like domain ATY43_19270 PF00005 ABC transporter ATY43_19275 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_19280 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_19290 PF00155 Aminotransferase class I and II ATY43_19300 PF00849 RNA pseudouridylate synthase ATY43_19310 PF05736 OprF membrane domain ATY43_19310 PF00691 OmpA family ATY43_19315 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_19315 PF00107 Zinc-binding dehydrogenase ATY43_19320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY43_19320 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_19335 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_19370 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY43_19380 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_19400 PF01609 Transposase DDE domain ATY43_19400 PF05598 Transposase domain (DUF772) ATY43_19415 PF00043 Glutathione S-transferase, C-terminal domain ATY43_19415 PF02798 Glutathione S-transferase, N-terminal domain ATY43_19420 PF00056 lactate/malate dehydrogenase, NAD binding domain ATY43_19420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATY43_19425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATY43_19450 PF01474 Class-II DAHP synthetase family ATY43_19460 PF02600 Disulfide bond formation protein DsbB ATY43_19470 PF01527 Transposase ATY43_19520 PF01527 Transposase ATY43_19570 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_19595 PF01062 Bestrophin, RFP-TM, chloride channel ATY43_19605 PF02875 Mur ligase family, glutamate ligase domain ATY43_19605 PF01225 Mur ligase family, catalytic domain ATY43_19605 PF08245 Mur ligase middle domain ATY43_19615 PF00365 Phosphofructokinase ATY43_19645 PF00719 Inorganic pyrophosphatase ATY43_19665 PF00593 TonB dependent receptor ATY43_19665 PF07715 TonB-dependent Receptor Plug Domain ATY43_19670 PF12833 Helix-turn-helix domain ATY43_19680 PF13667 ThiC-associated domain ATY43_19680 PF01964 Radical SAM ThiC family ATY43_19690 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATY43_19690 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATY43_19695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY43_19695 PF00205 Thiamine pyrophosphate enzyme, central domain ATY43_19695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY43_19705 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_19710 PF00682 HMGL-like ATY43_19710 PF08502 LeuA allosteric (dimerisation) domain ATY43_19715 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY43_19725 PF00694 Aconitase C-terminal domain ATY43_19730 PF00330 Aconitase family (aconitate hydratase) ATY43_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_19770 PF02321 Outer membrane efflux protein ATY43_19775 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ATY43_19780 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY43_19820 PF11838 ERAP1-like C-terminal domain ATY43_19820 PF01433 Peptidase family M1 domain ATY43_19825 PF00709 Adenylosuccinate synthetase ATY43_19835 PF01145 SPFH domain / Band 7 family ATY43_19840 PF01145 SPFH domain / Band 7 family ATY43_19840 PF12221 Bacterial membrane protein N terminal ATY43_19845 PF00072 Response regulator receiver domain ATY43_19850 PF00226 DnaJ domain ATY43_19850 PF01556 DnaJ C terminal domain ATY43_19860 PF08534 Redoxin ATY43_19900 PF00593 TonB dependent receptor ATY43_19900 PF07715 TonB-dependent Receptor Plug Domain ATY43_19905 PF04303 PrpF protein ATY43_19910 PF00330 Aconitase family (aconitate hydratase) ATY43_19910 PF00694 Aconitase C-terminal domain ATY43_19915 PF00285 Citrate synthase, C-terminal domain ATY43_19925 PF02954 Bacterial regulatory protein, Fis family ATY43_19925 PF06506 Propionate catabolism activator ATY43_19925 PF00158 Sigma-54 interaction domain ATY43_19945 PF09115 DNA polymerase III, delta subunit, C terminal ATY43_19950 PF02618 YceG-like family ATY43_19955 PF00425 chorismate binding enzyme ATY43_19955 PF04715 Anthranilate synthase component I, N terminal region ATY43_19960 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_19960 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_19965 PF00550 Phosphopantetheine attachment site ATY43_19975 PF00698 Acyl transferase domain ATY43_19985 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY43_19985 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY43_19990 PF01783 Ribosomal L32p protein family ATY43_19995 PF02620 Large ribosomal RNA subunit accumulation protein YceD ATY43_20000 PF02545 Maf-like protein ATY43_20015 PF09704 CRISPR-associated protein (Cas_Cas5) ATY43_20035 PF01867 CRISPR associated protein Cas1 ATY43_20040 PF09827 CRISPR associated protein Cas2 ATY43_20065 PF00593 TonB dependent receptor ATY43_20065 PF07715 TonB-dependent Receptor Plug Domain ATY43_20080 PF00392 Bacterial regulatory proteins, gntR family ATY43_20080 PF07702 UTRA domain ATY43_20095 PF00263 Bacterial type II and III secretion system protein ATY43_20095 PF03958 Bacterial type II/III secretion system short domain ATY43_20105 PF10741 Type II secretion system (T2SS), protein M subtype b ATY43_20110 PF05137 Fimbrial assembly protein (PilN) ATY43_20115 PF03934 Type II secretion system (T2SS), protein K ATY43_20125 PF07963 Prokaryotic N-terminal methylation motif ATY43_20130 PF12019 Type II transport protein GspH ATY43_20135 PF08334 Type II secretion system (T2SS), protein G ATY43_20140 PF00482 Type II secretion system (T2SS), protein F ATY43_20150 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY43_20150 PF00437 Type II/IV secretion system protein ATY43_20160 PF13018 Extended Signal Peptide of Type V secretion system ATY43_20160 PF03895 YadA-like membrane anchor domain ATY43_20160 PF05662 Coiled stalk of trimeric autotransporter adhesin ATY43_20160 PF05658 Head domain of trimeric autotransporter adhesin ATY43_20165 PF02769 AIR synthase related protein, C-terminal domain ATY43_20165 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ATY43_20165 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATY43_20170 PF13098 Thioredoxin-like domain ATY43_20170 PF10411 Disulfide bond isomerase protein N-terminus ATY43_20175 PF00589 Phage integrase family ATY43_20175 PF02899 Phage integrase, N-terminal SAM-like domain ATY43_20190 PF03739 Lipopolysaccharide export system permease LptF/LptG ATY43_20200 PF00883 Cytosol aminopeptidase family, catalytic domain ATY43_20200 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY43_20215 PF00133 tRNA synthetases class I (I, L, M and V) ATY43_20215 PF08264 Anticodon-binding domain of tRNA ATY43_20215 PF10458 Valyl tRNA synthetase tRNA binding arm ATY43_20225 PF01527 Transposase ATY43_20230 PF13683 Integrase core domain ATY43_20230 PF13276 HTH-like domain ATY43_20250 PF00544 Pectate lyase ATY43_20255 PF01464 Transglycosylase SLT domain ATY43_20255 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ATY43_20265 PF05598 Transposase domain (DUF772) ATY43_20265 PF01609 Transposase DDE domain ATY43_20295 PF01066 CDP-alcohol phosphatidyltransferase ATY43_20305 PF03129 Anticodon binding domain ATY43_20305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY43_20305 PF04073 Aminoacyl-tRNA editing domain ATY43_20310 PF00816 H-NS histone family ATY43_20320 PF02405 Permease MlaE ATY43_20325 PF00005 ABC transporter ATY43_20330 PF03886 ABC-type transport auxiliary lipoprotein component ATY43_20330 PF02470 MlaD protein ATY43_20350 PF14307 Glycosyltransferase WbsX ATY43_20350 PF05045 Rhamnan synthesis protein F ATY43_20355 PF01144 Coenzyme A transferase ATY43_20360 PF01144 Coenzyme A transferase ATY43_20365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY43_20365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY43_20365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY43_20365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY43_20370 PF00483 Nucleotidyl transferase ATY43_20370 PF01050 Mannose-6-phosphate isomerase ATY43_20375 PF04321 RmlD substrate binding domain ATY43_20380 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ATY43_20385 PF00483 Nucleotidyl transferase ATY43_20390 PF16363 GDP-mannose 4,6 dehydratase ATY43_20395 PF01012 Electron transfer flavoprotein domain ATY43_20400 PF01012 Electron transfer flavoprotein domain ATY43_20400 PF00766 Electron transfer flavoprotein FAD-binding domain ATY43_20410 PF00005 ABC transporter ATY43_20420 PF00872 Transposase, Mutator family ATY43_20455 PF01370 NAD dependent epimerase/dehydratase family ATY43_20465 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY43_20470 PF00571 CBS domain ATY43_20470 PF00291 Pyridoxal-phosphate dependent enzyme ATY43_20490 PF00437 Type II/IV secretion system protein ATY43_20495 PF02798 Glutathione S-transferase, N-terminal domain ATY43_20495 PF14497 Glutathione S-transferase, C-terminal domain ATY43_20505 PF00271 Helicase conserved C-terminal domain ATY43_20505 PF00270 DEAD/DEAH box helicase ATY43_20515 PF01242 6-pyruvoyl tetrahydropterin synthase ATY43_20530 PF13185 GAF domain ATY43_20540 PF13419 Haloacid dehalogenase-like hydrolase ATY43_20545 PF11799 impB/mucB/samB family C-terminal domain ATY43_20545 PF00817 impB/mucB/samB family ATY43_20550 PF07977 FabA-like domain ATY43_20555 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_20555 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_20565 PF01432 Peptidase family M3 ATY43_20580 PF00394 Multicopper oxidase ATY43_20580 PF07731 Multicopper oxidase ATY43_20580 PF07732 Multicopper oxidase ATY43_20585 PF05275 Copper resistance protein B precursor (CopB) ATY43_20590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY43_20605 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_20620 PF01380 SIS domain ATY43_20625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY43_20630 PF08402 TOBE domain ATY43_20630 PF00005 ABC transporter ATY43_20660 PF00072 Response regulator receiver domain ATY43_20660 PF13426 PAS domain ATY43_20660 PF08448 PAS fold ATY43_20660 PF00512 His Kinase A (phospho-acceptor) domain ATY43_20660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_20665 PF14602 Hexapeptide repeat of succinyl-transferase ATY43_20665 PF00132 Bacterial transferase hexapeptide (six repeats) ATY43_20665 PF12804 MobA-like NTP transferase domain ATY43_20675 PF01817 Chorismate mutase type II ATY43_20680 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATY43_20685 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY43_20685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY43_20690 PF00231 ATP synthase ATY43_20695 PF00306 ATP synthase alpha/beta chain, C terminal domain ATY43_20695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY43_20695 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY43_20700 PF00213 ATP synthase delta (OSCP) subunit ATY43_20705 PF00430 ATP synthase B/B' CF(0) ATY43_20710 PF00137 ATP synthase subunit C ATY43_20715 PF00119 ATP synthase A chain ATY43_20735 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY43_20735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY43_20745 PF00364 Biotin-requiring enzyme ATY43_20745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY43_20745 PF02817 e3 binding domain ATY43_20770 PF03180 NLPA lipoprotein ATY43_20775 PF00528 Binding-protein-dependent transport system inner membrane component ATY43_20780 PF00005 ABC transporter ATY43_20780 PF09383 NIL domain ATY43_20785 PF00892 EamA-like transporter family ATY43_20790 PF04461 Protein of unknown function (DUF520) ATY43_20820 PF13419 Haloacid dehalogenase-like hydrolase ATY43_20825 PF00849 RNA pseudouridylate synthase ATY43_20825 PF01479 S4 domain ATY43_20830 PF08468 Methyltransferase small domain N-terminal ATY43_20830 PF05175 Methyltransferase small domain ATY43_20845 PF07995 Glucose / Sorbosone dehydrogenase ATY43_20860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_20860 PF00512 His Kinase A (phospho-acceptor) domain ATY43_20860 PF00989 PAS fold ATY43_20880 PF00842 Alanine racemase, C-terminal domain ATY43_20880 PF01168 Alanine racemase, N-terminal domain ATY43_20885 PF01266 FAD dependent oxidoreductase ATY43_20890 PF01037 Lrp/AsnC ligand binding domain ATY43_20910 PF01618 MotA/TolQ/ExbB proton channel family ATY43_20915 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY43_20915 PF00691 OmpA family ATY43_20935 PF00072 Response regulator receiver domain ATY43_20935 PF00486 Transcriptional regulatory protein, C terminal ATY43_20940 PF00512 His Kinase A (phospho-acceptor) domain ATY43_20940 PF08448 PAS fold ATY43_20940 PF00072 Response regulator receiver domain ATY43_20940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_20940 PF13188 PAS domain ATY43_20950 PF04151 Bacterial pre-peptidase C-terminal domain ATY43_20950 PF00082 Subtilase family ATY43_20970 PF01061 ABC-2 type transporter ATY43_20975 PF00005 ABC transporter ATY43_20980 PF00999 Sodium/hydrogen exchanger family ATY43_20995 PF02469 Fasciclin domain ATY43_21005 PF03167 Uracil DNA glycosylase superfamily ATY43_21015 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY43_21025 PF03358 NADPH-dependent FMN reductase ATY43_21030 PF00248 Aldo/keto reductase family ATY43_21045 PF05649 Peptidase family M13 ATY43_21045 PF01431 Peptidase family M13 ATY43_21065 PF13520 Amino acid permease ATY43_21075 PF00072 Response regulator receiver domain ATY43_21075 PF04397 LytTr DNA-binding domain ATY43_21080 PF00072 Response regulator receiver domain ATY43_21080 PF04397 LytTr DNA-binding domain ATY43_21085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_21085 PF00672 HAMP domain ATY43_21085 PF02743 Cache domain ATY43_21085 PF06580 Histidine kinase ATY43_21125 PF01527 Transposase ATY43_21135 PF01739 CheR methyltransferase, SAM binding domain ATY43_21135 PF03705 CheR methyltransferase, all-alpha domain ATY43_21135 PF01339 CheB methylesterase ATY43_21135 PF08448 PAS fold ATY43_21150 PF02954 Bacterial regulatory protein, Fis family ATY43_21150 PF00158 Sigma-54 interaction domain ATY43_21150 PF00072 Response regulator receiver domain ATY43_21160 PF01654 Cytochrome bd terminal oxidase subunit I ATY43_21165 PF02322 Cytochrome bd terminal oxidase subunit II ATY43_21175 PF00665 Integrase core domain ATY43_21175 PF13936 Helix-turn-helix domain ATY43_21190 PF01609 Transposase DDE domain ATY43_21190 PF05598 Transposase domain (DUF772) ATY43_21205 PF13593 SBF-like CPA transporter family (DUF4137) ATY43_21220 PF01040 UbiA prenyltransferase family ATY43_21245 PF00510 Cytochrome c oxidase subunit III ATY43_21250 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ATY43_21255 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY43_21260 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ATY43_21260 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY43_21270 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY43_21270 PF00171 Aldehyde dehydrogenase family ATY43_21270 PF14850 DNA-binding domain of Proline dehydrogenase ATY43_21270 PF01619 Proline dehydrogenase ATY43_21275 PF01527 Transposase ATY43_21280 PF13683 Integrase core domain ATY43_21280 PF13276 HTH-like domain ATY43_21290 PF00210 Ferritin-like domain ATY43_21300 PF00293 NUDIX domain ATY43_21315 PF00380 Ribosomal protein S9/S16 ATY43_21320 PF00572 Ribosomal protein L13 ATY43_21325 PF03232 Ubiquinone biosynthesis protein COQ7 ATY43_21330 PF00893 Small Multidrug Resistance protein ATY43_21335 PF02675 S-adenosylmethionine decarboxylase ATY43_21340 PF00325 Bacterial regulatory proteins, crp family ATY43_21340 PF00027 Cyclic nucleotide-binding domain ATY43_21350 PF00218 Indole-3-glycerol phosphate synthase ATY43_21355 PF00591 Glycosyl transferase family, a/b domain ATY43_21355 PF02885 Glycosyl transferase family, helical bundle domain ATY43_21370 PF00117 Glutamine amidotransferase class-I ATY43_21380 PF01527 Transposase ATY43_21385 PF13683 Integrase core domain ATY43_21385 PF13276 HTH-like domain ATY43_21395 PF03971 Monomeric isocitrate dehydrogenase ATY43_21405 PF05598 Transposase domain (DUF772) ATY43_21465 PF00145 C-5 cytosine-specific DNA methylase ATY43_21470 PF03852 DNA mismatch endonuclease Vsr ATY43_21485 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ATY43_21500 PF07996 Type IV secretion system proteins ATY43_21515 PF00589 Phage integrase family ATY43_21530 PF04545 Sigma-70, region 4 ATY43_21530 PF04539 Sigma-70 region 3 ATY43_21530 PF04542 Sigma-70 region 2 ATY43_21530 PF00140 Sigma-70 factor, region 1.2 ATY43_21530 PF03979 Sigma-70 factor, region 1.1 ATY43_21530 PF04546 Sigma-70, non-essential region ATY43_21535 PF02580 D-Tyr-tRNA(Tyr) deacylase ATY43_21540 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY43_21555 PF00925 GTP cyclohydrolase II ATY43_21575 PF00535 Glycosyl transferase family 2 ATY43_21590 PF01029 NusB family ATY43_21590 PF01189 16S rRNA methyltransferase RsmB/F ATY43_21595 PF02911 Formyl transferase, C-terminal domain ATY43_21595 PF00551 Formyl transferase ATY43_21600 PF01327 Polypeptide deformylase ATY43_21605 PF01476 LysM domain ATY43_21610 PF17782 DprA winged helix domain ATY43_21610 PF02481 DNA recombination-mediator protein A ATY43_21615 PF04361 Protein of unknown function (DUF494) ATY43_21620 PF07963 Prokaryotic N-terminal methylation motif ATY43_21620 PF00114 Pilin (bacterial filament) ATY43_21630 PF01131 DNA topoisomerase ATY43_21630 PF13368 Topoisomerase C-terminal repeat ATY43_21630 PF01751 Toprim domain ATY43_21635 PF01300 Telomere recombination ATY43_21660 PF01343 Peptidase family S49 ATY43_21665 PF01554 MatE ATY43_21685 PF00270 DEAD/DEAH box helicase ATY43_21685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ATY43_21685 PF17764 3′ DNA-binding domain (3′BD) ATY43_21685 PF18074 Primosomal protein N C-terminal domain ATY43_21685 PF00271 Helicase conserved C-terminal domain ATY43_21705 PF03091 CutA1 divalent ion tolerance protein ATY43_21710 PF02683 Cytochrome C biogenesis protein transmembrane region ATY43_21710 PF11412 Disulphide bond corrector protein DsbC ATY43_21720 PF01220 Dehydroquinase class II ATY43_21725 PF00364 Biotin-requiring enzyme ATY43_21735 PF02785 Biotin carboxylase C-terminal domain ATY43_21735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY43_21735 PF00289 Biotin carboxylase, N-terminal domain ATY43_21765 PF01381 Helix-turn-helix ATY43_21775 PF02954 Bacterial regulatory protein, Fis family ATY43_21790 PF05598 Transposase domain (DUF772) ATY43_21805 PF15605 Bacterial toxin 28 ATY43_21805 PF04829 Pre-toxin domain with VENN motif ATY43_21805 PF13332 Hemagglutinin repeat ATY43_21805 PF05860 haemagglutination activity domain ATY43_21810 PF13332 Hemagglutinin repeat ATY43_21810 PF05860 haemagglutination activity domain ATY43_21810 PF04829 Pre-toxin domain with VENN motif ATY43_21810 PF13018 Extended Signal Peptide of Type V secretion system ATY43_21815 PF17287 POTRA domain ATY43_21815 PF08479 POTRA domain, ShlB-type ATY43_21815 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ATY43_21830 PF00818 Ice nucleation protein repeat ATY43_21840 PF00782 Dual specificity phosphatase, catalytic domain ATY43_21845 PF12147 Putative methyltransferase ATY43_21845 PF12146 Serine aminopeptidase, S33 ATY43_21855 PF12147 Putative methyltransferase ATY43_21855 PF12146 Serine aminopeptidase, S33 ATY43_21865 PF02142 MGS-like domain ATY43_21865 PF01808 AICARFT/IMPCHase bienzyme ATY43_21875 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATY43_21875 PF02843 Phosphoribosylglycinamide synthetase, C domain ATY43_21875 PF02844 Phosphoribosylglycinamide synthetase, N domain ATY43_21880 PF12704 MacB-like periplasmic core domain ATY43_21880 PF00005 ABC transporter ATY43_21880 PF02687 FtsX-like permease family ATY43_21890 PF12805 FUSC-like inner membrane protein yccS ATY43_21905 PF07690 Major Facilitator Superfamily ATY43_21925 PF17113 Regulatory signalling modulator protein AmpE ATY43_21925 PF03186 CobD/Cbib protein ATY43_21930 PF00293 NUDIX domain ATY43_21930 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ATY43_21930 PF09297 NADH pyrophosphatase zinc ribbon domain ATY43_21940 PF01521 Iron-sulphur cluster biosynthesis ATY43_21965 PF00486 Transcriptional regulatory protein, C terminal ATY43_21965 PF00072 Response regulator receiver domain ATY43_21970 PF00072 Response regulator receiver domain ATY43_21970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY43_21970 PF00672 HAMP domain ATY43_21970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_21970 PF00512 His Kinase A (phospho-acceptor) domain ATY43_21970 PF01627 Hpt domain ATY43_21975 PF01527 Transposase ATY43_22010 PF00579 tRNA synthetases class I (W and Y) ATY43_22015 PF01551 Peptidase family M23 ATY43_22015 PF04225 Opacity-associated protein A LysM-like domain ATY43_22020 PF03702 Anhydro-N-acetylmuramic acid kinase ATY43_22030 PF07690 Major Facilitator Superfamily ATY43_22035 PF03372 Endonuclease/Exonuclease/phosphatase family ATY43_22040 PF00156 Phosphoribosyl transferase domain ATY43_22050 PF13614 AAA domain ATY43_22055 PF17762 HTH domain found in ParB protein ATY43_22055 PF02195 ParB-like nuclease domain ATY43_22065 PF01370 NAD dependent epimerase/dehydratase family ATY43_22070 PF00535 Glycosyl transferase family 2 ATY43_22085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY43_22085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY43_22085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY43_22085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY43_22090 PF00692 dUTPase ATY43_22095 PF02441 Flavoprotein ATY43_22095 PF04127 DNA / pantothenate metabolism flavoprotein ATY43_22100 PF04002 RadC-like JAB domain ATY43_22105 PF05746 DALR anticodon binding domain ATY43_22105 PF03485 Arginyl tRNA synthetase N terminal domain ATY43_22105 PF00750 tRNA synthetases class I (R) ATY43_22120 PF00106 short chain dehydrogenase ATY43_22125 PF13936 Helix-turn-helix domain ATY43_22125 PF00665 Integrase core domain ATY43_22135 PF01614 Bacterial transcriptional regulator ATY43_22135 PF09339 IclR helix-turn-helix domain ATY43_22145 PF02627 Carboxymuconolactone decarboxylase family ATY43_22150 PF12146 Serine aminopeptidase, S33 ATY43_22155 PF00206 Lyase ATY43_22155 PF10397 Adenylosuccinate lyase C-terminus ATY43_22170 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ATY43_22170 PF00775 Dioxygenase ATY43_22175 PF02803 Thiolase, C-terminal domain ATY43_22175 PF00108 Thiolase, N-terminal domain ATY43_22190 PF01527 Transposase ATY43_22215 PF00268 Ribonucleotide reductase, small chain ATY43_22220 PF02867 Ribonucleotide reductase, barrel domain ATY43_22220 PF00317 Ribonucleotide reductase, all-alpha domain ATY43_22220 PF03477 ATP cone domain ATY43_22230 PF00583 Acetyltransferase (GNAT) family ATY43_22230 PF13380 CoA binding domain ATY43_22230 PF13607 Succinyl-CoA ligase like flavodoxin domain ATY43_22240 PF03448 MgtE intracellular N domain ATY43_22240 PF00571 CBS domain ATY43_22240 PF01769 Divalent cation transporter ATY43_22245 PF00999 Sodium/hydrogen exchanger family ATY43_22245 PF02254 TrkA-N domain ATY43_22255 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY43_22255 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY43_22260 PF00723 Glycosyl hydrolases family 15 ATY43_22275 PF05166 YcgL domain ATY43_22280 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY43_22280 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY43_22290 PF00535 Glycosyl transferase family 2 ATY43_22315 PF00155 Aminotransferase class I and II ATY43_22320 PF06968 Biotin and Thiamin Synthesis associated domain ATY43_22320 PF04055 Radical SAM superfamily ATY43_22330 PF01040 UbiA prenyltransferase family ATY43_22340 PF01594 AI-2E family transporter ATY43_22350 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY43_22350 PF00883 Cytosol aminopeptidase family, catalytic domain ATY43_22360 PF04542 Sigma-70 region 2 ATY43_22360 PF08281 Sigma-70, region 4 ATY43_22365 PF00199 Catalase ATY43_22385 PF00892 EamA-like transporter family ATY43_22415 PF00753 Metallo-beta-lactamase superfamily ATY43_22420 PF00579 tRNA synthetases class I (W and Y) ATY43_22425 PF05532 CsbD-like ATY43_22440 PF00491 Arginase family ATY43_22460 PF02223 Thymidylate kinase ATY43_22475 PF03309 Type III pantothenate kinase ATY43_22480 PF03099 Biotin/lipoate A/B protein ligase family ATY43_22480 PF02237 Biotin protein ligase C terminal domain ATY43_22480 PF08279 HTH domain ATY43_22505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_22505 PF00512 His Kinase A (phospho-acceptor) domain ATY43_22505 PF00672 HAMP domain ATY43_22510 PF00072 Response regulator receiver domain ATY43_22510 PF00486 Transcriptional regulatory protein, C terminal ATY43_22520 PF01207 Dihydrouridine synthase (Dus) ATY43_22540 PF00199 Catalase ATY43_22540 PF06628 Catalase-related immune-responsive ATY43_22545 PF13533 Biotin-lipoyl like ATY43_22565 PF01609 Transposase DDE domain ATY43_22565 PF05598 Transposase domain (DUF772) ATY43_22570 PF13307 Helicase C-terminal domain ATY43_22570 PF06733 DEAD_2 ATY43_22580 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATY43_22580 PF01488 Shikimate / quinate 5-dehydrogenase ATY43_22580 PF08501 Shikimate dehydrogenase substrate binding domain ATY43_22595 PF00667 FAD binding domain ATY43_22595 PF00175 Oxidoreductase NAD-binding domain ATY43_22595 PF00258 Flavodoxin ATY43_22605 PF03466 LysR substrate binding domain ATY43_22605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_22620 PF00490 Delta-aminolevulinic acid dehydratase ATY43_22645 PF00326 Prolyl oligopeptidase family ATY43_22645 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY43_22650 PF02798 Glutathione S-transferase, N-terminal domain ATY43_22650 PF00043 Glutathione S-transferase, C-terminal domain ATY43_22670 PF04820 Tryptophan halogenase ATY43_22685 PF00005 ABC transporter ATY43_22695 PF01381 Helix-turn-helix ATY43_22705 PF02583 Metal-sensitive transcriptional repressor ATY43_22710 PF01545 Cation efflux family ATY43_22715 PF00970 Oxidoreductase FAD-binding domain ATY43_22715 PF00111 2Fe-2S iron-sulfur cluster binding domain ATY43_22715 PF00175 Oxidoreductase NAD-binding domain ATY43_22720 PF00005 ABC transporter ATY43_22725 PF01061 ABC-2 type transporter ATY43_22735 PF08546 Ketopantoate reductase PanE/ApbA C terminal ATY43_22735 PF02558 Ketopantoate reductase PanE/ApbA ATY43_22770 PF13683 Integrase core domain ATY43_22770 PF13276 HTH-like domain ATY43_22775 PF01527 Transposase ATY43_22785 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_22820 PF01820 D-ala D-ala ligase N-terminus ATY43_22820 PF07478 D-ala D-ala ligase C-terminus ATY43_22835 PF03109 ABC1 family ATY43_22845 PF00849 RNA pseudouridylate synthase ATY43_22855 PF00472 RF-1 domain ATY43_22870 PF01432 Peptidase family M3 ATY43_22895 PF05336 L-rhamnose mutarotase ATY43_22900 PF07690 Major Facilitator Superfamily ATY43_22905 PF01614 Bacterial transcriptional regulator ATY43_22905 PF09339 IclR helix-turn-helix domain ATY43_22915 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_22920 PF02659 Putative manganese efflux pump ATY43_22925 PF00512 His Kinase A (phospho-acceptor) domain ATY43_22925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY43_22940 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ATY43_22940 PF06165 Glycosyltransferase family 36 ATY43_22955 PF01011 PQQ enzyme repeat ATY43_22955 PF13360 PQQ-like domain ATY43_22955 PF13570 PQQ-like domain ATY43_22975 PF01527 Transposase ATY43_22980 PF13276 HTH-like domain ATY43_22980 PF13683 Integrase core domain ATY43_23005 PF05598 Transposase domain (DUF772) ATY43_23005 PF01609 Transposase DDE domain ATY43_23050 PF00005 ABC transporter ATY43_23055 PF02405 Permease MlaE ATY43_23060 PF02470 MlaD protein ATY43_23065 PF05494 MlaC protein ATY43_23075 PF04333 MlaA lipoprotein ATY43_23085 PF05598 Transposase domain (DUF772) ATY43_23095 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_23105 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATY43_23105 PF06827 Zinc finger found in FPG and IleRS ATY43_23105 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATY43_23115 PF01527 Transposase ATY43_23150 PF03594 Benzoate membrane transport protein ATY43_23155 PF03594 Benzoate membrane transport protein ATY43_23160 PF08446 PAS fold ATY43_23160 PF00360 Phytochrome region ATY43_23160 PF01590 GAF domain ATY43_23160 PF13426 PAS domain ATY43_23165 PF01126 Heme oxygenase ATY43_23170 PF07690 Major Facilitator Superfamily ATY43_23175 PF01263 Aldose 1-epimerase ATY43_23190 PF02810 SEC-C motif ATY43_23205 PF00150 Cellulase (glycosyl hydrolase family 5) ATY43_23215 PF00150 Cellulase (glycosyl hydrolase family 5) ATY43_23220 PF00150 Cellulase (glycosyl hydrolase family 5) ATY43_23225 PF00107 Zinc-binding dehydrogenase ATY43_23225 PF08240 Alcohol dehydrogenase GroES-like domain ATY43_23260 PF05598 Transposase domain (DUF772) ATY43_23270 PF07715 TonB-dependent Receptor Plug Domain ATY43_23270 PF00593 TonB dependent receptor ATY43_23275 PF00593 TonB dependent receptor ATY43_23275 PF07715 TonB-dependent Receptor Plug Domain ATY43_23295 PF01037 Lrp/AsnC ligand binding domain ATY43_23300 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ATY43_23310 PF00657 GDSL-like Lipase/Acylhydrolase ATY43_23325 PF01527 Transposase ATY43_23340 PF00248 Aldo/keto reductase family ATY43_23345 PF00107 Zinc-binding dehydrogenase ATY43_23345 PF16884 N-terminal domain of oxidoreductase ATY43_23350 PF00248 Aldo/keto reductase family ATY43_23360 PF00849 RNA pseudouridylate synthase ATY43_23375 PF00270 DEAD/DEAH box helicase ATY43_23375 PF04408 Helicase associated domain (HA2) ATY43_23375 PF00271 Helicase conserved C-terminal domain ATY43_23375 PF08482 ATP-dependent helicase C-terminal ATY43_23380 PF07308 Protein of unknown function (DUF1456) ATY43_23385 PF13378 Enolase C-terminal domain-like ATY43_23385 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY43_23390 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY43_23405 PF00248 Aldo/keto reductase family ATY43_23415 PF04616 Glycosyl hydrolases family 43 ATY43_23415 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY43_23440 PF00072 Response regulator receiver domain ATY43_23440 PF00196 Bacterial regulatory proteins, luxR family ATY43_23445 PF16177 Acetyl-coenzyme A synthetase N-terminus ATY43_23445 PF13193 AMP-binding enzyme C-terminal domain ATY43_23445 PF00501 AMP-binding enzyme ATY43_23460 PF04341 Protein of unknown function, DUF485 ATY43_23465 PF00474 Sodium:solute symporter family ATY43_23480 PF03372 Endonuclease/Exonuclease/phosphatase family ATY43_23490 PF04226 Transglycosylase associated protein ATY43_23495 PF01648 4'-phosphopantetheinyl transferase superfamily ATY43_23500 PF09423 PhoD-like phosphatase ATY43_23500 PF16655 PhoD-like phosphatase, N-terminal domain ATY43_23505 PF16655 PhoD-like phosphatase, N-terminal domain ATY43_23505 PF09423 PhoD-like phosphatase ATY43_23510 PF02527 rRNA small subunit methyltransferase G ATY43_23520 PF00830 Ribosomal L28 family ATY43_23525 PF00471 Ribosomal protein L33 ATY43_23530 PF04909 Amidohydrolase ATY43_23535 PF04303 PrpF protein ATY43_23540 PF03737 Aldolase/RraA ATY43_23545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY43_23545 PF03466 LysR substrate binding domain ATY43_23550 PF13091 PLD-like domain ATY43_23550 PF13396 Phospholipase_D-nuclease N-terminal ATY43_23565 PF13361 UvrD-like helicase C-terminal domain ATY43_23565 PF00580 UvrD/REP helicase N-terminal domain ATY43_23580 PF13520 Amino acid permease ATY43_23585 PF02646 RmuC family ATY43_23595 PF00255 Glutathione peroxidase ATY43_23600 PF05598 Transposase domain (DUF772) ATY43_23610 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY43_23615 PF04055 Radical SAM superfamily ATY43_23625 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ATY43_23640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY43_23640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY43_23650 PF03572 Peptidase family S41 ATY43_23650 PF13180 PDZ domain ATY43_23655 PF01551 Peptidase family M23 ATY43_23665 PF04389 Peptidase family M28 ATY43_23680 PF05598 Transposase domain (DUF772) ATY43_23715 PF02463 RecF/RecN/SMC N terminal domain ATY43_23720 PF01227 GTP cyclohydrolase I ATY43_23740 PF00083 Sugar (and other) transporter ATY43_23775 PF05598 Transposase domain (DUF772) ATY43_23825 PF02595 Glycerate kinase family ATY43_23830 PF07690 Major Facilitator Superfamily ATY43_23845 PF10672 S-adenosylmethionine-dependent methyltransferase ATY43_23845 PF17785 PUA-like domain ATY43_23850 PF03741 Integral membrane protein TerC family ATY43_23855 PF01694 Rhomboid family ATY43_23860 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY43_23870 PF01569 PAP2 superfamily ATY43_23875 PF10396 GTP-binding protein TrmE N-terminus ATY43_23875 PF12631 MnmE helical domain ATY43_23875 PF01926 50S ribosome-binding GTPase ATY43_23880 PF01522 Polysaccharide deacetylase ATY43_23885 PF14849 YidC periplasmic domain ATY43_23885 PF02096 60Kd inner membrane protein ATY43_23890 PF00825 Ribonuclease P ATY43_23895 PF00468 Ribosomal protein L34