locus-tag	class	description
ATY43_00020	COG0187	DNA topoisomerase II activity
ATY43_00030	COG0501	Belongs to the peptidase M48B family
ATY43_00060	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ATY43_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY43_00090	COG4772	TonB-dependent receptor
ATY43_00100	COG3039	Transposase
ATY43_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY43_00125	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ATY43_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY43_00160	COG3039	Transposase
ATY43_00230	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_00265	COG1090	epimerase
ATY43_00270	COG0642	Histidine kinase
ATY43_00280	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY43_00385	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY43_00475	COG3264	Mechanosensitive ion channel
ATY43_00475	COG1511	domain protein
ATY43_00485	COG3293	Transposase
ATY43_00495	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY43_00500	COG2354	Protein conserved in bacteria
ATY43_00510	COG0745	RESPONSE REGULATOR receiver
ATY43_00510	COG3706	GGDEF domain
ATY43_00525	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY43_00550	COG0702	epimerase
ATY43_00560	COG1858	cytochrome C peroxidase
ATY43_00625	COG0513	Belongs to the DEAD box helicase family
ATY43_00635	COG3039	Transposase
ATY43_00655	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY43_00675	COG1116	anion transmembrane transporter activity
ATY43_00710	COG1136	(ABC) transporter
ATY43_00725	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_00750	COG1272	protein, Hemolysin III
ATY43_00755	COG1205	dead DEAH box helicase
ATY43_00755	COG1111	helicase
ATY43_00810	COG0070	glutamate synthase
ATY43_00810	COG0069	glutamate synthase activity
ATY43_00810	COG0067	glutamate synthase
ATY43_00815	COG0493	'glutamate synthase
ATY43_00835	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_00855	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY43_00860	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY43_00865	COG1609	Transcriptional regulator
ATY43_00890	COG0366	Alpha amylase catalytic
ATY43_00895	COG0366	Alpha amylase catalytic
ATY43_00915	COG3328	transposase activity
ATY43_00940	COG0606	chelatase, subunit chli
ATY43_00985	COG1166	arginine decarboxylase activity
ATY43_01055	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_01080	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY43_01095	COG0210	DNA helicase
ATY43_01115	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY43_01150	COG2937	Belongs to the GPAT DAPAT family
ATY43_01170	COG2963	transposase activity
ATY43_01175	COG3328	transposase activity
ATY43_01225	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY43_01235	COG1119	ATPase activity
ATY43_01250	COG0517	IMP dehydrogenase activity
ATY43_01250	COG1125	glycine betaine transport
ATY43_01265	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY43_01270	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY43_01275	COG3550	peptidyl-serine autophosphorylation
ATY43_01280	COG1396	sequence-specific DNA binding
ATY43_01300	COG0489	protein tyrosine kinase activity
ATY43_01305	COG2062	phosphohistidine phosphatase, SixA
ATY43_01315	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY43_01365	COG0174	glutamine synthetase
ATY43_01370	COG0347	Belongs to the P(II) protein family
ATY43_01375	COG0004	ammonium transporteR
ATY43_01380	COG3852	Histidine kinase
ATY43_01385	COG2204	response regulator
ATY43_01390	COG2032	superoxide dismutase activity
ATY43_01395	COG2032	superoxide dismutase activity
ATY43_01455	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY43_01460	COG1074	ATP-dependent DNA helicase activity
ATY43_01470	COG3549	Plasmid maintenance system killer
ATY43_01545	COG1764	response to oxidative stress
ATY43_01550	COG1846	Transcriptional regulator
ATY43_01610	COG3293	Transposase
ATY43_01645	COG2211	Major facilitator Superfamily
ATY43_01665	COG3693	PFAM glycoside hydrolase, family 10
ATY43_01670	COG3693	PFAM glycoside hydrolase, family 10
ATY43_01695	COG0246	Mannitol dehydrogenase
ATY43_01700	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY43_01710	COG4948	Mandelate Racemase Muconate Lactonizing
ATY43_01720	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY43_01735	COG0037	tRNA processing
ATY43_01740	COG2974	May be involved in recombination
ATY43_01765	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY43_01775	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY43_01785	COG0805	protein transport
ATY43_01795	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY43_01795	COG0519	Catalyzes the synthesis of GMP from XMP
ATY43_01810	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY43_01815	COG0752	glycyl-tRNA synthetase alpha subunit
ATY43_01825	COG0457	Tetratricopeptide repeat
ATY43_01830	COG4771	TonB-dependent receptor
ATY43_01845	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY43_01855	COG0697	spore germination
ATY43_01865	COG0523	cobalamin synthesis protein
ATY43_01925	COG1960	acyl-CoA dehydrogenase activity
ATY43_01930	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY43_01945	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_02000	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY43_02045	COG0084	hydrolase, TatD family'
ATY43_02060	COG0583	DNA-binding transcription factor activity
ATY43_02065	COG2814	Major facilitator Superfamily
ATY43_02075	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY43_02080	COG1902	pentaerythritol trinitrate reductase activity
ATY43_02110	COG0745	RESPONSE REGULATOR receiver
ATY43_02115	COG2205	protein histidine kinase activity
ATY43_02120	COG2205	protein histidine kinase activity
ATY43_02135	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY43_02140	COG0583	DNA-binding transcription factor activity
ATY43_02170	COG0702	epimerase
ATY43_02175	COG1733	regulation of RNA biosynthetic process
ATY43_02240	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATY43_02255	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY43_02295	COG2911	Protein conserved in bacteria
ATY43_02300	COG0729	surface antigen
ATY43_02310	COG2963	transposase activity
ATY43_02320	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY43_02325	COG3118	belongs to the thioredoxin family
ATY43_02335	COG2884	Cell division ATP-binding protein ftsE
ATY43_02340	COG2177	Part of the ABC transporter FtsEX involved in
ATY43_02345	COG2201	protein-glutamate methylesterase activity
ATY43_02355	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY43_02365	COG1252	NADH dehydrogenase
ATY43_02390	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY43_02405	COG4771	TonB-dependent receptor
ATY43_02420	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY43_02460	COG3386	PFAM SMP-30 Gluconolaconase
ATY43_02475	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY43_02510	COG2353	YceI-like domain
ATY43_02605	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ATY43_02660	COG3039	Transposase
ATY43_02690	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY43_02720	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY43_02725	COG0318	PFAM AMP-dependent synthetase and ligase
ATY43_02735	COG0596	Alpha beta hydrolase
ATY43_02750	COG3177	Filamentation induced by cAMP protein fic
ATY43_02755	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY43_02770	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY43_02795	COG4191	Histidine kinase
ATY43_02800	COG0028	Belongs to the TPP enzyme family
ATY43_02820	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY43_02845	COG5383	Protein conserved in bacteria
ATY43_02855	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY43_02860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY43_02865	COG1473	amidohydrolase
ATY43_02885	COG3328	transposase activity
ATY43_02985	COG0358	DNA primase activity
ATY43_02990	COG1295	ribonuclease BN
ATY43_03000	COG3293	Transposase
ATY43_03010	COG3039	Transposase
ATY43_03050	COG0735	belongs to the Fur family
ATY43_03095	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY43_03100	COG0084	hydrolase, TatD family'
ATY43_03115	COG1960	acyl-CoA dehydrogenase activity
ATY43_03140	COG0367	asparagine synthase
ATY43_03150	COG0305	Participates in initiation and elongation during chromosome replication
ATY43_03155	COG0415	Belongs to the DNA photolyase family
ATY43_03280	COG5001	Diguanylate cyclase
ATY43_03280	COG5002	protein histidine kinase activity
ATY43_03285	COG1187	pseudouridine synthase activity
ATY43_03315	COG0475	glutathione-regulated potassium exporter activity
ATY43_03320	COG5002	protein histidine kinase activity
ATY43_03320	COG5000	phosphorelay sensor kinase activity
ATY43_03325	COG0745	RESPONSE REGULATOR receiver
ATY43_03355	COG1132	(ABC) transporter
ATY43_03365	COG3293	Transposase
ATY43_03375	COG3039	Transposase
ATY43_03390	COG3039	Transposase
ATY43_03410	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY43_03420	COG4969	Belongs to the N-Me-Phe pilin family
ATY43_03425	COG2194	sulfuric ester hydrolase activity
ATY43_03445	COG2184	nucleotidyltransferase activity
ATY43_03470	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY43_03480	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY43_03480	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY43_03485	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY43_03490	COG0564	pseudouridine synthase activity
ATY43_03515	COG3387	PFAM Glycoside hydrolase 15-related
ATY43_03520	COG1877	trehalose-phosphatase activity
ATY43_03575	COG1595	DNA-templated transcription, initiation
ATY43_03585	COG1946	Acyl-CoA thioesterase
ATY43_03600	COG0824	Thioesterase
ATY43_03605	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY43_03625	COG0268	Binds directly to 16S ribosomal RNA
ATY43_03630	COG0728	peptidoglycan biosynthetic process
ATY43_03635	COG0196	riboflavin kinase activity
ATY43_03665	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY43_03670	COG1845	cytochrome c oxidase, subunit III
ATY43_03675	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY43_03685	COG3501	Rhs element vgr protein
ATY43_03695	COG3209	COG3209 Rhs family protein
ATY43_03755	COG3039	Transposase
ATY43_03760	COG3039	Transposase
ATY43_03780	COG2963	transposase activity
ATY43_03785	COG2801	Transposase and inactivated derivatives
ATY43_03820	COG2801	Transposase and inactivated derivatives
ATY43_03830	COG2963	transposase activity
ATY43_03930	COG0824	Thioesterase
ATY43_03940	COG0848	biopolymer transport protein
ATY43_03955	COG2885	chlorophyll binding
ATY43_03965	COG0602	queuosine metabolic process
ATY43_03980	COG3293	Transposase
ATY43_04015	COG0514	ATP-dependent DNA helicase (RecQ)
ATY43_04020	COG0783	Belongs to the Dps family
ATY43_04025	COG1643	Atp-dependent helicase
ATY43_04035	COG0837	glucose binding
ATY43_04040	COG0837	glucose binding
ATY43_04045	COG0837	glucose binding
ATY43_04060	COG0535	radical SAM domain protein
ATY43_04065	COG0535	radical SAM domain protein
ATY43_04080	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY43_04095	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY43_04105	COG1199	ATP-dependent helicase activity
ATY43_04115	COG1397	ADP-ribosylglycohydrolase
ATY43_04125	COG0189	ligase activity
ATY43_04140	COG0835	chemotaxis
ATY43_04145	COG0840	transmembrane signaling receptor activity
ATY43_04185	COG2304	oxidoreductase activity
ATY43_04195	COG1446	asparaginase
ATY43_04200	COG3142	Participates in the control of copper homeostasis
ATY43_04245	COG3537	Alpha-1,2-mannosidase
ATY43_04300	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY43_04310	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY43_04320	COG3858	chitin binding
ATY43_04320	COG1388	LysM domain
ATY43_04335	COG0837	glucose binding
ATY43_04340	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY43_04350	COG0494	nUDIX hydrolase
ATY43_04360	COG3956	TIGRFAM MazG family protein
ATY43_04375	COG0330	HflC and HflK could
ATY43_04415	COG1960	acyl-CoA dehydrogenase activity
ATY43_04425	COG1309	transcriptional regulator
ATY43_04430	COG4771	TonB-dependent receptor
ATY43_04440	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY43_04450	COG0463	Glycosyl transferase, family 2
ATY43_04455	COG0517	IMP dehydrogenase activity
ATY43_04455	COG0516	GMP reductase activity
ATY43_04475	COG1272	protein, Hemolysin III
ATY43_04485	COG0739	heme binding
ATY43_04490	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY43_04495	COG0626	cystathionine gamma-synthase activity
ATY43_04505	COG1760	l-serine dehydratase
ATY43_04515	COG2353	YceI-like domain
ATY43_04525	COG2353	YceI-like domain
ATY43_04575	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY43_04600	COG1960	acyl-CoA dehydrogenase activity
ATY43_04605	COG1024	Enoyl-CoA hydratase
ATY43_04625	COG1024	Enoyl-CoA hydratase
ATY43_04625	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY43_04710	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY43_04715	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY43_04720	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY43_04735	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY43_04740	COG1278	Cold shock
ATY43_04765	COG1201	RNA secondary structure unwinding
ATY43_04770	COG1793	dna ligase
ATY43_04780	COG1793	dna ligase
ATY43_04780	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY43_04795	COG3706	GGDEF domain
ATY43_04795	COG0745	RESPONSE REGULATOR receiver
ATY43_04810	COG0183	Belongs to the thiolase family
ATY43_04830	COG1451	nucleotide metabolic process
ATY43_04840	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY43_04845	COG3039	Transposase
ATY43_04885	COG1047	Peptidyl-prolyl cis-trans
ATY43_04900	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY43_04910	COG1902	pentaerythritol trinitrate reductase activity
ATY43_04915	COG2814	Major facilitator Superfamily
ATY43_04950	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY43_04950	COG0392	lysyltransferase activity
ATY43_04965	COG0251	oxidation-reduction process
ATY43_04970	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY43_04985	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY43_05010	COG1595	DNA-templated transcription, initiation
ATY43_05030	COG2878	Part of a membrane complex involved in electron transport
ATY43_05060	COG0833	amino acid
ATY43_05065	COG2040	homocysteine
ATY43_05085	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY43_05185	COG1131	(ABC) transporter
ATY43_05190	COG4771	TonB-dependent receptor
ATY43_05240	COG0750	zinc metalloprotease
ATY43_05250	COG0575	Belongs to the CDS family
ATY43_05315	COG0024	Methionine aminopeptidase
ATY43_05335	COG1393	Belongs to the ArsC family
ATY43_05350	COG0367	asparagine synthase
ATY43_05365	COG4774	siderophore transport
ATY43_05395	COG2207	Transcriptional regulator
ATY43_05410	COG1566	PFAM secretion protein HlyD family protein
ATY43_05415	COG2814	Major facilitator Superfamily
ATY43_05430	COG3293	Transposase
ATY43_05450	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_05480	COG1960	acyl-CoA dehydrogenase activity
ATY43_05500	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ATY43_05510	COG2914	Belongs to the UPF0125 (RnfH) family
ATY43_05515	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY43_05525	COG0497	DNA recombination
ATY43_05550	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY43_05555	COG1605	Chorismate mutase
ATY43_05555	COG0287	Prephenate dehydrogenase
ATY43_05575	COG0583	DNA-binding transcription factor activity
ATY43_05585	COG1132	(ABC) transporter
ATY43_05620	COG2850	peptidyl-arginine hydroxylation
ATY43_05665	COG3293	Transposase
ATY43_05675	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_05685	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_05725	COG1131	(ABC) transporter
ATY43_05730	COG1725	Transcriptional regulator
ATY43_05735	COG0386	Belongs to the glutathione peroxidase family
ATY43_05775	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY43_05785	COG0646	methionine synthase
ATY43_05785	COG1410	methionine synthase
ATY43_05790	COG0646	methionine synthase
ATY43_05790	COG1410	methionine synthase
ATY43_05800	COG1960	acyl-CoA dehydrogenase activity
ATY43_05840	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY43_05850	COG3039	Transposase
ATY43_05900	COG1278	Cold shock
ATY43_05945	COG2801	Transposase and inactivated derivatives
ATY43_05950	COG2963	transposase activity
ATY43_05980	COG3039	Transposase
ATY43_05990	COG0583	DNA-binding transcription factor activity
ATY43_06060	COG0742	ribosomal rna small subunit methyltransferase
ATY43_06080	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY43_06085	COG0405	Gamma-glutamyltransferase
ATY43_06100	COG3293	Transposase
ATY43_06215	COG3039	Transposase
ATY43_06265	COG1862	Preprotein translocase
ATY43_06275	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY43_06305	COG3328	transposase activity
ATY43_06320	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY43_06330	COG0704	Plays a role in the regulation of phosphate uptake
ATY43_06345	COG0573	inorganic phosphate transmembrane transporter activity
ATY43_06350	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY43_06370	COG3293	Transposase
ATY43_06390	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY43_06400	COG1024	Enoyl-CoA hydratase
ATY43_06410	COG0494	nUDIX hydrolase
ATY43_06480	COG0667	Aldo Keto reductase
ATY43_06490	COG2925	Exonuclease
ATY43_06515	COG0288	reversible hydration of carbon dioxide
ATY43_06550	COG0316	Belongs to the HesB IscA family
ATY43_06575	COG3115	cell septum assembly
ATY43_06590	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY43_06615	COG2963	transposase activity
ATY43_06635	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY43_06645	COG2986	histidine ammonia-lyase
ATY43_06690	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY43_06700	COG1605	Chorismate mutase
ATY43_06700	COG0077	Prephenate dehydratase
ATY43_06715	COG2963	transposase activity
ATY43_06730	COG4566	intracellular signal transduction
ATY43_06775	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY43_06800	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ATY43_06835	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY43_06850	COG2203	Gaf domain
ATY43_06850	COG5001	Diguanylate cyclase
ATY43_06850	COG3706	GGDEF domain
ATY43_06850	COG4251	negative regulation of phosphorylation
ATY43_06935	COG0386	Belongs to the glutathione peroxidase family
ATY43_06995	COG3706	GGDEF domain
ATY43_07015	COG3293	Transposase
ATY43_07025	COG1247	-acetyltransferase
ATY43_07050	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY43_07070	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY43_07185	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY43_07210	COG0431	NADPH-dependent FMN reductase
ATY43_07215	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ATY43_07220	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY43_07240	COG0784	Response regulator, receiver
ATY43_07240	COG5002	protein histidine kinase activity
ATY43_07240	COG2205	protein histidine kinase activity
ATY43_07265	COG3293	Transposase
ATY43_07280	COG0800	Aldolase
ATY43_07285	COG0129	dihydroxy-acid dehydratase activity
ATY43_07290	COG0363	glucosamine-6-phosphate deaminase activity
ATY43_07300	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY43_07315	COG0354	folic acid binding
ATY43_07325	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY43_07340	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY43_07355	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY43_07380	COG0811	peptide transport
ATY43_07405	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY43_07485	COG2201	protein-glutamate methylesterase activity
ATY43_07505	COG3293	Transposase
ATY43_07550	COG3293	Transposase
ATY43_07620	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY43_07620	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY43_07680	COG0124	histidyl-tRNA synthetase
ATY43_07695	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY43_07730	COG1012	belongs to the aldehyde dehydrogenase family
ATY43_07755	COG0697	spore germination
ATY43_07760	COG1794	racemase activity, acting on amino acids and derivatives
ATY43_07780	COG0671	phosphoesterase, PA-phosphatase related
ATY43_07795	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY43_07810	COG2183	response to ionizing radiation
ATY43_07820	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY43_07820	COG0723	plastoquinol--plastocyanin reductase activity
ATY43_07835	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY43_07845	COG1183	phosphatidylcholine synthase activity
ATY43_07850	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_07875	COG0668	transmembrane transport
ATY43_07885	COG0590	tRNA wobble adenosine to inosine editing
ATY43_07890	COG1321	iron dependent repressor
ATY43_07895	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY43_07910	COG0583	DNA-binding transcription factor activity
ATY43_07915	COG0583	DNA-binding transcription factor activity
ATY43_07945	COG0583	DNA-binding transcription factor activity
ATY43_07950	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY43_08005	COG0475	glutathione-regulated potassium exporter activity
ATY43_08005	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY43_08010	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY43_08020	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY43_08025	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY43_08040	COG0539	negative regulation of cytoplasmic translation
ATY43_08050	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY43_08060	COG2957	Belongs to the agmatine deiminase family
ATY43_08070	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY43_08095	COG0395	ABC-type sugar transport system, permease component
ATY43_08100	COG1175	transmembrane transport
ATY43_08130	COG2350	Protein conserved in bacteria
ATY43_08135	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY43_08140	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY43_08145	COG1187	pseudouridine synthase activity
ATY43_08170	COG0436	Aminotransferase
ATY43_08230	COG0277	FAD linked oxidase domain protein
ATY43_08235	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY43_08245	COG0531	amino acid
ATY43_08250	COG0531	amino acid
ATY43_08290	COG3039	Transposase
ATY43_08300	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY43_08335	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_08380	COG0303	'Molybdopterin
ATY43_08390	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY43_08400	COG1426	Protein conserved in bacteria
ATY43_08415	COG0105	UTP biosynthetic process
ATY43_08425	COG1024	Enoyl-CoA hydratase
ATY43_08425	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY43_08430	COG0183	Belongs to the thiolase family
ATY43_08435	COG0038	chloride channel
ATY43_08455	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY43_08475	COG1674	ftsk spoiiie
ATY43_08480	COG0492	ferredoxin-NADP+ reductase activity
ATY43_08505	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY43_08510	COG0542	response to heat
ATY43_08515	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY43_08550	COG5001	Diguanylate cyclase
ATY43_08555	COG4585	Histidine kinase
ATY43_08565	COG5002	protein histidine kinase activity
ATY43_08585	COG0784	Response regulator, receiver
ATY43_08585	COG0835	chemotaxis
ATY43_08595	COG1558	bacterial-type flagellum-dependent cell motility
ATY43_08600	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY43_08605	COG1749	Flagellar hook protein flgE
ATY43_08610	COG4787	bacterial-type flagellum-dependent cell motility
ATY43_08620	COG4786	Flagellar basal body rod
ATY43_08650	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY43_08655	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY43_08685	COG2201	protein-glutamate methylesterase activity
ATY43_08690	COG2204	response regulator
ATY43_08705	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY43_08715	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_08750	COG1677	Flagellar hook-basal body complex protein FliE
ATY43_08800	COG3190	flagellar
ATY43_08815	COG1987	bacterial-type flagellum assembly
ATY43_08820	COG1684	flagellar biosynthetic protein fliR
ATY43_08825	COG3300	MHYT domain
ATY43_08825	COG5001	Diguanylate cyclase
ATY43_08830	COG3300	MHYT domain
ATY43_08830	COG5001	Diguanylate cyclase
ATY43_08845	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY43_08855	COG0455	bacterial-type flagellum organization
ATY43_08875	COG2198	Histidine kinase
ATY43_08875	COG0643	Histidine kinase
ATY43_08890	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_09015	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY43_09020	COG4988	ABC transporter
ATY43_09030	COG1271	oxidase subunit
ATY43_09035	COG1294	oxidase, subunit
ATY43_09095	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY43_09100	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY43_09110	COG0137	argininosuccinate synthase activity
ATY43_09115	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY43_09130	COG2166	iron-sulfur cluster assembly
ATY43_09145	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY43_09160	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY43_09170	COG4302	ethanolamine ammonia-lyase activity
ATY43_09190	COG3039	Transposase
ATY43_09210	COG4677	pectinesterase activity
ATY43_09245	COG0402	S-adenosylhomocysteine deaminase activity
ATY43_09260	COG1509	lysine 2,3-aminomutase activity
ATY43_09265	COG3300	MHYT domain
ATY43_09265	COG5001	Diguanylate cyclase
ATY43_09280	COG0483	inositol monophosphate 1-phosphatase activity
ATY43_09315	COG0513	Belongs to the DEAD box helicase family
ATY43_09325	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ATY43_09335	COG0625	glutathione transferase activity
ATY43_09350	COG4681	YaeQ
ATY43_09355	COG2081	HI0933 family
ATY43_09380	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_09405	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY43_09410	COG0802	atpase or kinase
ATY43_09415	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY43_09415	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY43_09420	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY43_09440	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY43_09500	COG3039	Transposase
ATY43_09505	COG3328	transposase activity
ATY43_09535	COG2969	positive regulation of protein catabolic process
ATY43_09540	COG0625	glutathione transferase activity
ATY43_09545	COG2857	Cytochrome c1
ATY43_09550	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY43_09555	COG0723	plastoquinol--plastocyanin reductase activity
ATY43_09560	COG0741	lytic transglycosylase activity
ATY43_09590	COG1702	phosphate starvation-inducible protein PhoH
ATY43_09610	COG4535	Mg2 and Co2 transporter CorC
ATY43_09625	COG1012	belongs to the aldehyde dehydrogenase family
ATY43_09635	COG1177	transmembrane transport
ATY43_09680	COG0174	glutamine synthetase
ATY43_09685	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY43_09690	COG0745	RESPONSE REGULATOR receiver
ATY43_09690	COG3706	GGDEF domain
ATY43_09705	COG0243	molybdopterin cofactor binding
ATY43_09730	COG1121	(ABC) transporter
ATY43_09740	COG2733	membrane
ATY43_09745	COG5002	protein histidine kinase activity
ATY43_09745	COG2205	protein histidine kinase activity
ATY43_09745	COG0784	Response regulator, receiver
ATY43_09755	COG3039	Transposase
ATY43_09760	COG2902	Dehydrogenase
ATY43_09770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY43_09775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY43_09795	COG1609	Transcriptional regulator
ATY43_09800	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY43_09800	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY43_09805	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY43_09810	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY43_09810	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY43_09825	COG3039	Transposase
ATY43_09880	COG3501	Rhs element vgr protein
ATY43_09945	COG4771	TonB-dependent receptor
ATY43_09955	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY43_09975	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY43_09980	COG1360	Flagellar Motor Protein
ATY43_09985	COG1192	Involved in chromosome partitioning
ATY43_09990	COG0835	chemotaxis
ATY43_10000	COG0745	RESPONSE REGULATOR receiver
ATY43_10030	COG0840	transmembrane signaling receptor activity
ATY43_10040	COG3293	Transposase
ATY43_10050	COG0840	transmembrane signaling receptor activity
ATY43_10060	COG0840	transmembrane signaling receptor activity
ATY43_10065	COG0840	transmembrane signaling receptor activity
ATY43_10070	COG0840	transmembrane signaling receptor activity
ATY43_10075	COG0840	transmembrane signaling receptor activity
ATY43_10090	COG0835	chemotaxis
ATY43_10110	COG0840	transmembrane signaling receptor activity
ATY43_10140	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY43_10170	COG0318	PFAM AMP-dependent synthetase and ligase
ATY43_10175	COG1024	Enoyl-CoA hydratase
ATY43_10180	COG2205	protein histidine kinase activity
ATY43_10180	COG2198	Histidine kinase
ATY43_10180	COG0784	Response regulator, receiver
ATY43_10200	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY43_10240	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY43_10250	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY43_10255	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY43_10265	COG0505	Belongs to the CarA family
ATY43_10270	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY43_10280	COG3293	Transposase
ATY43_10285	COG2258	MOSC domain
ATY43_10290	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY43_10360	COG0477	Major facilitator Superfamily
ATY43_10370	COG1070	Carbohydrate kinase
ATY43_10385	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY43_10400	COG0800	Aldolase
ATY43_10415	COG3734	2-keto-3-deoxy-galactonokinase
ATY43_10420	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY43_10430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY43_10445	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY43_10450	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY43_10460	COG0351	phosphomethylpyrimidine kinase
ATY43_10490	COG0583	DNA-binding transcription factor activity
ATY43_10495	COG1741	Belongs to the pirin family
ATY43_10515	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY43_10520	COG0305	Participates in initiation and elongation during chromosome replication
ATY43_10540	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY43_10550	COG2137	regulation of response to DNA damage stimulus
ATY43_10570	COG1546	Belongs to the CinA family
ATY43_10575	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY43_10580	COG1923	regulation of RNA biosynthetic process
ATY43_10590	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY43_10595	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY43_10605	COG1534	Rna-binding protein
ATY43_10620	COG1238	metal cluster binding
ATY43_10635	COG2840	Smr protein MutS2
ATY43_10655	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ATY43_10715	COG0306	phosphate transporter
ATY43_10725	COG1253	flavin adenine dinucleotide binding
ATY43_10740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY43_10750	COG0477	Major facilitator Superfamily
ATY43_10760	COG1132	(ABC) transporter
ATY43_10765	COG1136	(ABC) transporter
ATY43_10780	COG0438	transferase activity, transferring glycosyl groups
ATY43_10790	COG2264	protein methyltransferase activity
ATY43_10820	COG2244	polysaccharide biosynthetic process
ATY43_10870	COG1595	DNA-templated transcription, initiation
ATY43_10885	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY43_10905	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY43_10940	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY43_10950	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY43_10955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY43_10985	COG2963	transposase activity
ATY43_11000	COG4644	lycopene metabolic process
ATY43_11010	COG1858	cytochrome C peroxidase
ATY43_11040	COG0515	serine threonine protein kinase
ATY43_11045	COG0631	protein serine/threonine phosphatase activity
ATY43_11080	COG3501	Rhs element vgr protein
ATY43_11090	COG3039	Transposase
ATY43_11155	COG3039	Transposase
ATY43_11215	COG2801	Transposase and inactivated derivatives
ATY43_11240	COG0428	transporter
ATY43_11245	COG0428	transporter
ATY43_11250	COG3064	Membrane
ATY43_11260	COG1530	ribonuclease E activity
ATY43_11275	COG3293	Transposase
ATY43_11305	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY43_11375	COG1648	precorrin-2 dehydrogenase activity
ATY43_11375	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY43_11400	COG0746	molybdenum cofactor guanylyltransferase activity
ATY43_11455	COG4206	TonB-dependent receptor
ATY43_11480	COG4206	TonB-dependent receptor
ATY43_11530	COG0531	amino acid
ATY43_11545	COG0006	proline dipeptidase activity
ATY43_11555	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY43_11570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY43_11575	COG3938	Belongs to the proline racemase family
ATY43_11585	COG0552	protein localization to endoplasmic reticulum
ATY43_11610	COG0784	Response regulator, receiver
ATY43_11610	COG4191	Histidine kinase
ATY43_11640	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY43_11765	COG0438	transferase activity, transferring glycosyl groups
ATY43_11770	COG0438	transferase activity, transferring glycosyl groups
ATY43_11815	COG0776	regulation of translation
ATY43_11825	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ATY43_11830	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY43_11835	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY43_11840	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY43_11855	COG2963	transposase activity
ATY43_11880	COG0556	nucleotide-excision repair
ATY43_11885	COG4969	Belongs to the N-Me-Phe pilin family
ATY43_11925	COG3039	Transposase
ATY43_11930	COG1611	Belongs to the LOG family
ATY43_11945	COG2095	MarC family integral membrane protein
ATY43_11955	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY43_11960	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY43_11995	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY43_12015	COG0195	Participates in both transcription termination and antitermination
ATY43_12030	COG1007	ATP synthesis coupled electron transport
ATY43_12045	COG0713	ATP synthesis coupled electron transport
ATY43_12060	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY43_12065	COG1034	ATP synthesis coupled electron transport
ATY43_12070	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY43_12075	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY43_12095	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY43_12135	COG3293	Transposase
ATY43_12180	COG0133	tryptophan synthase activity
ATY43_12215	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY43_12220	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY43_12230	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY43_12255	COG0433	COG0433 Predicted ATPase
ATY43_12260	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_12280	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY43_12290	COG0412	Dienelactone hydrolase
ATY43_12310	COG0489	protein tyrosine kinase activity
ATY43_12345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY43_12350	COG2311	Membrane
ATY43_12355	COG1047	Peptidyl-prolyl cis-trans
ATY43_12360	COG0791	NLP P60 protein
ATY43_12365	COG0791	NLP P60 protein
ATY43_12380	COG1301	dicarboxylic acid transport
ATY43_12385	COG1785	Belongs to the alkaline phosphatase family
ATY43_12390	COG0037	tRNA processing
ATY43_12400	COG0142	geranyltranstransferase activity
ATY43_12420	COG0312	modulator of DNA gyrase
ATY43_12430	COG0312	modulator of DNA gyrase
ATY43_12445	COG1530	ribonuclease E activity
ATY43_12455	COG2968	Membrane
ATY43_12465	COG3039	Transposase
ATY43_12525	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY43_12550	COG3118	belongs to the thioredoxin family
ATY43_12565	COG3293	Transposase
ATY43_12610	COG3039	Transposase
ATY43_12620	COG3293	Transposase
ATY43_12635	COG3039	Transposase
ATY43_12660	COG3293	Transposase
ATY43_12665	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_12700	COG2963	transposase activity
ATY43_12745	COG0471	metal ion transport
ATY43_12745	COG3273	potassium ion transport
ATY43_12780	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_12790	COG1970	mechanosensitive ion channel activity
ATY43_12825	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY43_12830	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY43_12860	COG0308	aminopeptidase N
ATY43_12865	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY43_12875	COG0529	Catalyzes the synthesis of activated sulfate
ATY43_12875	COG2895	sulfate adenylyltransferase (ATP) activity
ATY43_12885	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY43_12915	COG2205	protein histidine kinase activity
ATY43_12915	COG2198	Histidine kinase
ATY43_12915	COG0784	Response regulator, receiver
ATY43_12970	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY43_12975	COG3588	fructose-bisphosphate aldolase
ATY43_12980	COG0469	pyruvate kinase activity
ATY43_12990	COG0126	phosphoglycerate kinase activity
ATY43_13030	COG0753	catalase activity
ATY43_13055	COG1917	Cupin 2, conserved barrel domain protein
ATY43_13055	COG2207	Transcriptional regulator
ATY43_13080	COG1506	peptidase
ATY43_13080	COG0823	Involved in the tonB-independent uptake of proteins
ATY43_13105	COG1297	OPT oligopeptide transporter protein
ATY43_13120	COG0587	DNA-directed DNA polymerase activity
ATY43_13205	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY43_13210	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY43_13215	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY43_13220	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY43_13240	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY43_13250	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY43_13255	COG0732	type I restriction modification DNA specificity domain
ATY43_13375	COG3501	Rhs element vgr protein
ATY43_13405	COG3501	Rhs element vgr protein
ATY43_13420	COG2963	transposase activity
ATY43_13425	COG2801	Transposase and inactivated derivatives
ATY43_13430	COG3501	Rhs element vgr protein
ATY43_13480	COG3501	Rhs element vgr protein
ATY43_13485	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY43_13535	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY43_13545	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY43_13555	COG3501	Rhs element vgr protein
ATY43_13605	COG2963	transposase activity
ATY43_13635	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY43_13650	COG2197	response regulator
ATY43_13655	COG4585	Histidine kinase
ATY43_13680	COG2894	cell division
ATY43_13685	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY43_13695	COG0642	Histidine kinase
ATY43_13700	COG0745	RESPONSE REGULATOR receiver
ATY43_13705	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY43_13715	COG2194	sulfuric ester hydrolase activity
ATY43_13745	COG3551	Protein conserved in bacteria
ATY43_13790	COG2963	transposase activity
ATY43_13815	COG0203	ribosomal protein L17
ATY43_13820	COG0202	RNA polymerase activity
ATY43_13835	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY43_13840	COG0201	protein transport
ATY43_13850	COG1841	ribosomal large subunit assembly
ATY43_13855	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY43_13860	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ATY43_13875	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY43_13885	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ATY43_13895	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY43_13900	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY43_13905	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY43_13930	COG0089	rRNA binding
ATY43_13970	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY43_13985	COG0222	ribosome binding
ATY43_13990	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ATY43_14005	COG0250	Participates in transcription elongation, termination and antitermination
ATY43_14010	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY43_14040	COG0012	GTP binding
ATY43_14055	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY43_14095	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY43_14115	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY43_14150	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY43_14155	COG1404	Belongs to the peptidase S8 family
ATY43_14160	COG1404	Belongs to the peptidase S8 family
ATY43_14170	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY43_14200	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY43_14205	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY43_14225	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY43_14240	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY43_14240	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY43_14280	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY43_14290	COG3634	alkyl hydroperoxide reductase activity
ATY43_14295	COG0583	DNA-binding transcription factor activity
ATY43_14300	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY43_14305	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY43_14345	COG2197	response regulator
ATY43_14370	COG3706	GGDEF domain
ATY43_14370	COG0745	RESPONSE REGULATOR receiver
ATY43_14400	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_14410	COG3293	Transposase
ATY43_14465	COG3386	PFAM SMP-30 Gluconolaconase
ATY43_14485	COG1024	Enoyl-CoA hydratase
ATY43_14495	COG0318	PFAM AMP-dependent synthetase and ligase
ATY43_14500	COG0583	DNA-binding transcription factor activity
ATY43_14540	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY43_14545	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY43_14555	COG2096	Adenosyltransferase
ATY43_14560	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY43_14575	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY43_14635	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY43_14650	COG0642	Histidine kinase
ATY43_14665	COG4181	ATPase activity
ATY43_14675	COG2175	clavaminate synthase activity
ATY43_14685	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY43_14730	COG3293	Transposase
ATY43_14745	COG0667	Aldo Keto reductase
ATY43_14755	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY43_14760	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY43_14775	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY43_14780	COG4106	trans-aconitate 2-methyltransferase activity
ATY43_14790	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY43_14830	COG2226	methyltransferase
ATY43_14885	COG3321	synthase
ATY43_14885	COG0604	alcohol dehydrogenase
ATY43_14885	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_14895	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY43_14920	COG0494	nUDIX hydrolase
ATY43_14935	COG1388	LysM domain
ATY43_14935	COG4942	peptidase
ATY43_14960	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY43_14965	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY43_14990	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY43_15005	COG3116	cell division
ATY43_15050	COG1988	membrane-bound metal-dependent
ATY43_15055	COG0277	FAD linked oxidase domain protein
ATY43_15060	COG0745	RESPONSE REGULATOR receiver
ATY43_15065	COG2205	protein histidine kinase activity
ATY43_15075	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY43_15080	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY43_15105	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY43_15135	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY43_15135	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY43_15175	COG0488	(ABC) transporter
ATY43_15225	COG0745	RESPONSE REGULATOR receiver
ATY43_15230	COG2205	protein histidine kinase activity
ATY43_15300	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY43_15310	COG2963	transposase activity
ATY43_15315	COG3039	Transposase
ATY43_15320	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY43_15390	COG3293	Transposase
ATY43_15420	COG1649	PFAM Uncharacterised BCR, COG1649
ATY43_15420	COG0726	polysaccharide deacetylase
ATY43_15425	COG1215	transferase activity, transferring glycosyl groups
ATY43_15435	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY43_15440	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY43_15445	COG1609	Transcriptional regulator
ATY43_15480	COG2963	transposase activity
ATY43_15490	COG2801	Transposase and inactivated derivatives
ATY43_15510	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY43_15515	COG4191	Histidine kinase
ATY43_15520	COG0784	Response regulator, receiver
ATY43_15525	COG4251	negative regulation of phosphorylation
ATY43_15530	COG2823	Periplasmic or secreted lipoprotein
ATY43_15535	COG0673	inositol 2-dehydrogenase activity
ATY43_15540	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY43_15580	COG1051	belongs to the nudix hydrolase family
ATY43_15580	COG1056	cytidyltransferase-related domain
ATY43_15615	COG1686	Belongs to the peptidase S11 family
ATY43_15625	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY43_15630	COG2951	lytic endotransglycosylase activity
ATY43_15640	COG3039	Transposase
ATY43_15650	COG3501	Rhs element vgr protein
ATY43_15685	COG0772	Belongs to the SEDS family
ATY43_15700	COG1792	Involved in formation and maintenance of cell shape
ATY43_15705	COG1077	Cell shape determining protein MreB Mrl
ATY43_15715	COG3039	Transposase
ATY43_15775	COG2199	diguanylate cyclase activity
ATY43_15780	COG0308	aminopeptidase N
ATY43_15810	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY43_15855	COG1505	serine-type exopeptidase activity
ATY43_15890	COG3275	phosphorelay sensor kinase activity
ATY43_15910	COG3293	Transposase
ATY43_15930	COG3706	GGDEF domain
ATY43_15940	COG0659	secondary active sulfate transmembrane transporter activity
ATY43_15945	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY43_15945	COG5297	Belongs to the glycosyl hydrolase family 6
ATY43_15955	COG0840	transmembrane signaling receptor activity
ATY43_15990	COG3293	Transposase
ATY43_16030	COG0598	Magnesium transport protein CorA
ATY43_16040	COG1113	amino acid transport
ATY43_16045	COG5297	Belongs to the glycosyl hydrolase family 6
ATY43_16050	COG4305	rare lipoprotein A
ATY43_16055	COG0697	spore germination
ATY43_16125	COG4221	oxidoreductase activity
ATY43_16140	COG2963	transposase activity
ATY43_16160	COG0456	acetyltransferase
ATY43_16170	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY43_16200	COG3227	Zinc metalloprotease (Elastase)
ATY43_16215	COG2111	Na H antiporter
ATY43_16215	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY43_16220	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY43_16225	COG0651	ATP synthesis coupled electron transport
ATY43_16235	COG2212	antiporter activity
ATY43_16240	COG1320	monovalent cation:proton antiporter activity
ATY43_16265	COG3104	oligopeptide transport
ATY43_16310	COG0183	Belongs to the thiolase family
ATY43_16360	COG3039	Transposase
ATY43_16395	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY43_16400	COG3039	Transposase
ATY43_16405	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY43_16415	COG4948	Mandelate Racemase Muconate Lactonizing
ATY43_16445	COG0531	amino acid
ATY43_16455	COG3293	Transposase
ATY43_16475	COG4682	membrane
ATY43_16485	COG2133	pyrroloquinoline quinone binding
ATY43_16535	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_16545	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY43_16555	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY43_16560	COG1610	YqeY-like protein
ATY43_16575	COG3293	Transposase
ATY43_16595	COG3039	Transposase
ATY43_16625	COG2205	protein histidine kinase activity
ATY43_16635	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY43_16645	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY43_16655	COG0643	Histidine kinase
ATY43_16655	COG2198	Histidine kinase
ATY43_16660	COG0840	transmembrane signaling receptor activity
ATY43_16665	COG0835	chemotaxis
ATY43_16670	COG2200	EAL domain
ATY43_16670	COG2199	diguanylate cyclase activity
ATY43_16670	COG2202	Pas domain
ATY43_16675	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY43_16690	COG3590	peptidase
ATY43_16705	COG0588	phosphoglycerate mutase activity
ATY43_16710	COG1515	deoxyribonuclease V activity
ATY43_16720	COG1741	Belongs to the pirin family
ATY43_16760	COG3501	Rhs element vgr protein
ATY43_16770	COG3039	Transposase
ATY43_16790	COG3501	Rhs element vgr protein
ATY43_16815	COG1741	Belongs to the pirin family
ATY43_16820	COG1966	Carbon starvation protein
ATY43_16825	COG2879	small protein
ATY43_16855	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_16855	COG3321	synthase
ATY43_16855	COG0604	alcohol dehydrogenase
ATY43_16860	COG5001	Diguanylate cyclase
ATY43_16860	COG3706	GGDEF domain
ATY43_16860	COG2203	Gaf domain
ATY43_16860	COG4251	negative regulation of phosphorylation
ATY43_16870	COG0629	single-stranded DNA binding
ATY43_16875	COG0142	geranyltranstransferase activity
ATY43_16905	COG0527	aspartate kinase activity
ATY43_16915	COG0384	phenazine biosynthesis protein PhzF
ATY43_16920	COG3293	Transposase
ATY43_16935	COG1764	response to oxidative stress
ATY43_16970	COG0519	Catalyzes the synthesis of GMP from XMP
ATY43_16995	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY43_17055	COG1959	2 iron, 2 sulfur cluster binding
ATY43_17060	COG0719	Fe-S assembly protein
ATY43_17065	COG0396	ATPase activity
ATY43_17070	COG0719	Fe-S assembly protein
ATY43_17075	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY43_17090	COG3039	Transposase
ATY43_17095	COG2963	transposase activity
ATY43_17100	COG2801	Transposase and inactivated derivatives
ATY43_17130	COG3328	transposase activity
ATY43_17140	COG2963	transposase activity
ATY43_17165	COG0326	Molecular chaperone. Has ATPase activity
ATY43_17170	COG2207	Transcriptional regulator
ATY43_17190	COG2755	lipolytic protein G-D-S-L family
ATY43_17190	COG0657	acetylesterase activity
ATY43_17215	COG0488	(ABC) transporter
ATY43_17260	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY43_17260	COG4651	solute:proton antiporter activity
ATY43_17265	COG2801	Transposase and inactivated derivatives
ATY43_17275	COG4772	TonB-dependent receptor
ATY43_17285	COG4264	IucA IucC family
ATY43_17290	COG2814	Major facilitator Superfamily
ATY43_17300	COG0019	diaminopimelate decarboxylase activity
ATY43_17360	COG4206	TonB-dependent receptor
ATY43_17375	COG2963	transposase activity
ATY43_17390	COG0542	response to heat
ATY43_17435	COG0534	Mate efflux family protein
ATY43_17485	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY43_17495	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY43_17550	COG1555	photosystem II stabilization
ATY43_17555	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY43_17570	COG3178	'Phosphotransferase
ATY43_17575	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY43_17585	COG0628	permease
ATY43_17610	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY43_17635	COG0271	Belongs to the BolA IbaG family
ATY43_17645	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY43_17655	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY43_17660	COG1137	ATPase activity
ATY43_17675	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY43_17695	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY43_17700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY43_17705	COG2239	Acts as a magnesium transporter
ATY43_17715	COG1294	oxidase, subunit
ATY43_17720	COG1271	oxidase subunit
ATY43_17730	COG1113	amino acid transport
ATY43_17745	COG2197	response regulator
ATY43_17750	COG0531	amino acid
ATY43_17805	COG0789	Transcriptional regulator
ATY43_17830	COG0754	glutathionylspermidine amidase activity
ATY43_17855	COG1842	Phage shock protein A
ATY43_17875	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY43_17885	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY43_17995	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY43_18015	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY43_18050	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY43_18055	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY43_18090	COG3039	Transposase
ATY43_18115	COG0745	RESPONSE REGULATOR receiver
ATY43_18120	COG2205	protein histidine kinase activity
ATY43_18135	COG3293	Transposase
ATY43_18140	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY43_18185	COG3453	Protein conserved in bacteria
ATY43_18185	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY43_18190	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY43_18195	COG4149	molybdate abc transporter
ATY43_18200	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY43_18220	COG0642	Histidine kinase
ATY43_18225	COG0745	RESPONSE REGULATOR receiver
ATY43_18235	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_18245	COG1022	Amp-dependent synthetase and ligase
ATY43_18270	COG1376	ErfK ybiS ycfS ynhG family protein
ATY43_18275	COG0739	heme binding
ATY43_18280	COG4773	Receptor
ATY43_18285	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY43_18290	COG1301	dicarboxylic acid transport
ATY43_18310	COG2304	oxidoreductase activity
ATY43_18330	COG0714	Associated with various cellular activities
ATY43_18385	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY43_18405	COG0254	rRNA binding
ATY43_18415	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY43_18425	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY43_18455	COG1561	YicC-like family, N-terminal region
ATY43_18475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY43_18505	COG0006	proline dipeptidase activity
ATY43_18530	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY43_18540	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ATY43_18550	COG2912	Transglutaminase-like superfamily
ATY43_18555	COG1773	rubredoxin
ATY43_18560	COG0352	thiamine-phosphate diphosphorylase activity
ATY43_18585	COG2801	Transposase and inactivated derivatives
ATY43_18590	COG2963	transposase activity
ATY43_18600	COG0281	malic enzyme
ATY43_18600	COG0280	phosphate acetyltransferase
ATY43_18620	COG4191	Histidine kinase
ATY43_18635	COG0583	DNA-binding transcription factor activity
ATY43_18650	COG2197	response regulator
ATY43_18655	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY43_18660	COG0642	Histidine kinase
ATY43_18675	COG2851	Citrate transporter
ATY43_18680	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_18685	COG1609	Transcriptional regulator
ATY43_18745	COG0726	polysaccharide deacetylase
ATY43_18750	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY43_18795	COG0242	peptide deformylase activity
ATY43_18815	COG0714	Associated with various cellular activities
ATY43_18835	COG0537	adenosine 5'-monophosphoramidase activity
ATY43_18870	COG0314	molybdopterin synthase activity
ATY43_18875	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY43_18890	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY43_18895	COG1234	tRNA 3'-trailer cleavage
ATY43_18905	COG0859	PFAM glycosyl transferase family 9
ATY43_18915	COG0582	viral genome integration into host DNA
ATY43_19000	COG0631	protein serine/threonine phosphatase activity
ATY43_19010	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY43_19035	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY43_19070	COG0740	serine-type endopeptidase activity
ATY43_19075	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY43_19100	COG2963	transposase activity
ATY43_19130	COG0473	3-isopropylmalate dehydrogenase activity
ATY43_19160	COG4783	chaperone-mediated protein folding
ATY43_19175	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY43_19185	COG0438	transferase activity, transferring glycosyl groups
ATY43_19190	COG0671	phosphoesterase, PA-phosphatase related
ATY43_19210	COG2833	Protein of unknown function (DUF455)
ATY43_19230	COG0285	dihydrofolate synthase activity
ATY43_19240	COG0406	alpha-ribazole phosphatase activity
ATY43_19270	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY43_19275	COG4208	sulfate ABC transporter
ATY43_19280	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY43_19285	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY43_19290	COG0156	8-amino-7-oxononanoate synthase activity
ATY43_19320	COG1902	pentaerythritol trinitrate reductase activity
ATY43_19320	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY43_19335	COG3293	Transposase
ATY43_19370	COG0584	glycerophosphoryl diester phosphodiesterase
ATY43_19380	COG3293	Transposase
ATY43_19400	COG3039	Transposase
ATY43_19415	COG0625	glutathione transferase activity
ATY43_19425	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY43_19450	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY43_19470	COG2963	transposase activity
ATY43_19520	COG2963	transposase activity
ATY43_19570	COG3293	Transposase
ATY43_19595	COG3781	membrane
ATY43_19605	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY43_19645	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY43_19765	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY43_19770	COG1538	Outer membrane efflux protein
ATY43_19775	COG1519	Transferase
ATY43_19780	COG1560	Kdo2-lipid A biosynthetic process
ATY43_19820	COG0308	aminopeptidase N
ATY43_19825	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ATY43_19835	COG0330	HflC and HflK could
ATY43_19840	COG0330	HflC and HflK could
ATY43_19860	COG0678	peroxiredoxin activity
ATY43_19925	COG3829	transcription factor binding
ATY43_19950	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY43_19955	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY43_19970	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_19995	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY43_20035	COG1518	maintenance of DNA repeat elements
ATY43_20040	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY43_20080	COG2188	Transcriptional regulator
ATY43_20095	COG1450	Type ii and iii secretion system protein
ATY43_20110	COG3166	PFAM Fimbrial assembly family protein
ATY43_20115	COG3156	type II secretion system protein K
ATY43_20120	COG4795	General secretion pathway protein
ATY43_20125	COG2165	general secretion pathway protein
ATY43_20130	COG4970	Tfp pilus assembly protein FimT
ATY43_20135	COG2165	general secretion pathway protein
ATY43_20140	COG1459	type II secretion system
ATY43_20150	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY43_20160	COG5295	Hep Hag repeat protein
ATY43_20165	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY43_20165	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY43_20170	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY43_20175	COG4974	Belongs to the 'phage' integrase family
ATY43_20190	COG0795	lipopolysaccharide-transporting ATPase activity
ATY43_20215	COG0525	valine-tRNA ligase activity
ATY43_20225	COG2963	transposase activity
ATY43_20230	COG2801	Transposase and inactivated derivatives
ATY43_20265	COG3039	Transposase
ATY43_20295	COG1183	phosphatidylcholine synthase activity
ATY43_20320	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY43_20325	COG1127	ABC transporter
ATY43_20330	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY43_20330	COG3218	ABC-type transport auxiliary lipoprotein component
ATY43_20365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY43_20370	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY43_20370	COG0662	Cupin 2, conserved barrel domain protein
ATY43_20395	COG2086	electron transfer activity
ATY43_20420	COG3328	transposase activity
ATY43_20465	COG0626	cystathionine gamma-synthase activity
ATY43_20495	COG0625	glutathione transferase activity
ATY43_20505	COG0513	Belongs to the DEAD box helicase family
ATY43_20515	COG0720	synthase
ATY43_20530	COG1956	GAF domain-containing protein
ATY43_20565	COG0339	signal peptide processing
ATY43_20605	COG3293	Transposase
ATY43_20620	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY43_20625	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY43_20630	COG3842	ATPase activity
ATY43_20715	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY43_20735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY43_20745	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY43_20775	COG2011	ABC-type metal ion transport system permease component
ATY43_20785	COG0697	spore germination
ATY43_20820	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY43_20825	COG1187	pseudouridine synthase activity
ATY43_20830	COG2813	Specifically methylates the guanine in position
ATY43_20860	COG2202	Pas domain
ATY43_20860	COG2205	protein histidine kinase activity
ATY43_20885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY43_20890	COG1522	sequence-specific DNA binding
ATY43_20935	COG0745	RESPONSE REGULATOR receiver
ATY43_20950	COG1404	Belongs to the peptidase S8 family
ATY43_20970	COG0842	Transport permease protein
ATY43_20975	COG1131	(ABC) transporter
ATY43_20980	COG0025	NhaP-type Na H and K H
ATY43_20995	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY43_21005	COG1573	uracil-dna glycosylase
ATY43_21015	COG3384	dioxygenase
ATY43_21030	COG0667	Aldo Keto reductase
ATY43_21045	COG3590	peptidase
ATY43_21065	COG0531	amino acid
ATY43_21075	COG3279	Response regulator of the LytR AlgR family
ATY43_21080	COG3279	Response regulator of the LytR AlgR family
ATY43_21085	COG2972	Histidine kinase
ATY43_21125	COG2963	transposase activity
ATY43_21150	COG2204	response regulator
ATY43_21160	COG1271	oxidase subunit
ATY43_21165	COG1294	oxidase, subunit
ATY43_21175	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_21190	COG3039	Transposase
ATY43_21250	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY43_21260	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY43_21275	COG2963	transposase activity
ATY43_21280	COG2801	Transposase and inactivated derivatives
ATY43_21380	COG2963	transposase activity
ATY43_21385	COG2801	Transposase and inactivated derivatives
ATY43_21530	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY43_21540	COG1560	Kdo2-lipid A biosynthetic process
ATY43_21590	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY43_21590	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY43_21600	COG0242	peptide deformylase activity
ATY43_21605	COG1652	LysM domain
ATY43_21610	COG0758	DNA mediated transformation
ATY43_21630	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY43_21630	COG1754	DNA topoisomerase type I activity
ATY43_21650	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_21660	COG0616	signal peptide processing
ATY43_21665	COG0534	Mate efflux family protein
ATY43_21685	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY43_21705	COG1324	tolerance protein
ATY43_21725	COG0511	ligase activity, forming carbon-carbon bonds
ATY43_21735	COG0439	Biotin carboxylase
ATY43_21775	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY43_21810	COG3210	domain, Protein
ATY43_21815	COG2831	hemolysin activation secretion protein
ATY43_21840	COG0671	phosphoesterase, PA-phosphatase related
ATY43_21840	COG2453	phosphatase
ATY43_21845	COG2267	carboxylic ester hydrolase activity
ATY43_21855	COG2267	carboxylic ester hydrolase activity
ATY43_21875	COG0151	Belongs to the GarS family
ATY43_21880	COG0577	efflux transmembrane transporter activity
ATY43_21880	COG1136	(ABC) transporter
ATY43_21890	COG1289	transmembrane transporter activity
ATY43_21905	COG2814	Major facilitator Superfamily
ATY43_21925	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY43_21975	COG2963	transposase activity
ATY43_22015	COG0739	heme binding
ATY43_22030	COG2211	Major facilitator Superfamily
ATY43_22035	COG0708	Exodeoxyribonuclease III
ATY43_22050	COG1192	Involved in chromosome partitioning
ATY43_22055	COG1475	DNA binding
ATY43_22070	COG0463	Glycosyl transferase, family 2
ATY43_22095	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY43_22120	COG4221	oxidoreductase activity
ATY43_22125	COG2826	transposase and inactivated derivatives, IS30 family
ATY43_22135	COG1414	Transcriptional regulator
ATY43_22145	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY43_22150	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY43_22155	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY43_22165	COG3485	protocatechuate 3,4-dioxygenase
ATY43_22170	COG3485	protocatechuate 3,4-dioxygenase
ATY43_22190	COG2963	transposase activity
ATY43_22215	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY43_22220	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY43_22230	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY43_22230	COG1042	CoA-binding domain protein
ATY43_22230	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY43_22240	COG2239	Acts as a magnesium transporter
ATY43_22255	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY43_22260	COG3387	PFAM Glycoside hydrolase 15-related
ATY43_22275	COG3100	YcgL domain-containing protein
ATY43_22280	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY43_22290	COG0463	Glycosyl transferase, family 2
ATY43_22305	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_22325	COG1040	competence protein
ATY43_22340	COG0628	permease
ATY43_22350	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY43_22360	COG1595	DNA-templated transcription, initiation
ATY43_22365	COG0753	catalase activity
ATY43_22415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY43_22420	COG0180	Tryptophanyl-tRNA synthetase
ATY43_22425	COG3237	CsbD-like
ATY43_22480	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY43_22480	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY43_22505	COG2205	protein histidine kinase activity
ATY43_22510	COG0745	RESPONSE REGULATOR receiver
ATY43_22520	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY43_22545	COG1566	PFAM secretion protein HlyD family protein
ATY43_22565	COG3039	Transposase
ATY43_22570	COG1199	ATP-dependent helicase activity
ATY43_22605	COG0583	DNA-binding transcription factor activity
ATY43_22650	COG0625	glutathione transferase activity
ATY43_22685	COG4555	ABC transporter
ATY43_22695	COG1476	TRANSCRIPTIONal
ATY43_22720	COG1131	(ABC) transporter
ATY43_22725	COG0842	Transport permease protein
ATY43_22735	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY43_22775	COG2963	transposase activity
ATY43_22785	COG3293	Transposase
ATY43_22820	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY43_22845	COG0564	pseudouridine synthase activity
ATY43_22870	COG0339	signal peptide processing
ATY43_22895	COG3254	rhamnose metabolic process
ATY43_22900	COG0738	Major facilitator superfamily
ATY43_22905	COG1414	Transcriptional regulator
ATY43_22915	COG3293	Transposase
ATY43_22925	COG2205	protein histidine kinase activity
ATY43_22940	COG3459	Glycosyltransferase 36 associated
ATY43_22945	COG2211	Major facilitator Superfamily
ATY43_22950	COG3265	gluconokinase activity
ATY43_22955	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY43_22975	COG2963	transposase activity
ATY43_22980	COG2801	Transposase and inactivated derivatives
ATY43_23005	COG3039	Transposase
ATY43_23050	COG1127	ABC transporter
ATY43_23055	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY43_23060	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY43_23075	COG2853	Lipoprotein
ATY43_23095	COG3293	Transposase
ATY43_23115	COG2963	transposase activity
ATY43_23150	COG3135	benzoate transporter
ATY43_23155	COG3135	benzoate transporter
ATY43_23175	COG0676	glucose-6-phosphate 1-epimerase activity
ATY43_23205	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY43_23215	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY43_23220	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY43_23225	COG1064	alcohol dehydrogenase
ATY43_23270	COG4773	Receptor
ATY43_23295	COG1522	sequence-specific DNA binding
ATY43_23300	COG3186	Phenylalanine-4-hydroxylase
ATY43_23310	COG2755	lipolytic protein G-D-S-L family
ATY43_23325	COG2963	transposase activity
ATY43_23340	COG0656	L-ascorbic acid biosynthetic process
ATY43_23345	COG2130	NADP-dependent
ATY43_23350	COG0667	Aldo Keto reductase
ATY43_23360	COG1187	pseudouridine synthase activity
ATY43_23375	COG1643	Atp-dependent helicase
ATY43_23380	COG4807	Protein conserved in bacteria
ATY43_23385	COG4948	Mandelate Racemase Muconate Lactonizing
ATY43_23390	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY43_23395	COG1028	Short-chain dehydrogenase reductase Sdr
ATY43_23415	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY43_23460	COG3162	membrane
ATY43_23465	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY43_23480	COG0708	Exodeoxyribonuclease III
ATY43_23495	COG2091	lysine biosynthetic process via aminoadipic acid
ATY43_23505	COG3540	Alkaline phosphatase
ATY43_23520	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY43_23525	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY43_23530	COG2159	amidohydrolase
ATY43_23540	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY43_23545	COG0583	DNA-binding transcription factor activity
ATY43_23550	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY43_23565	COG0210	DNA helicase
ATY43_23580	COG0531	amino acid
ATY43_23585	COG1322	Protein conserved in bacteria
ATY43_23595	COG0386	Belongs to the glutathione peroxidase family
ATY43_23610	COG3293	Transposase
ATY43_23650	COG0793	Belongs to the peptidase S41A family
ATY43_23655	COG4942	peptidase
ATY43_23665	COG2234	aminopeptidase activity
ATY43_23715	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY43_23720	COG0302	gtp cyclohydrolase
ATY43_23740	COG0477	Major facilitator Superfamily
ATY43_23825	COG1929	Belongs to the glycerate kinase type-1 family
ATY43_23830	COG2271	Major facilitator Superfamily
ATY43_23845	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY43_23850	COG0861	Integral membrane protein TerC family
ATY43_23860	COG0584	glycerophosphoryl diester phosphodiesterase
ATY43_23870	COG0671	phosphoesterase, PA-phosphatase related
ATY43_23880	COG0726	polysaccharide deacetylase
ATY43_23895	COG0230	Belongs to the bacterial ribosomal protein bL34 family