locus-tag	class	description
ATY44_00020	COG0187	DNA topoisomerase II activity
ATY44_00030	COG0501	Belongs to the peptidase M48B family
ATY44_00060	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ATY44_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY44_00090	COG4772	TonB-dependent receptor
ATY44_00100	COG3039	Transposase
ATY44_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY44_00125	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ATY44_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY44_00160	COG3039	Transposase
ATY44_00225	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_00260	COG1090	epimerase
ATY44_00265	COG0642	Histidine kinase
ATY44_00275	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY44_00370	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY44_00460	COG1511	domain protein
ATY44_00460	COG3264	Mechanosensitive ion channel
ATY44_00470	COG3293	Transposase
ATY44_00480	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY44_00485	COG2354	Protein conserved in bacteria
ATY44_00495	COG3706	GGDEF domain
ATY44_00495	COG0745	RESPONSE REGULATOR receiver
ATY44_00510	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY44_00535	COG0702	epimerase
ATY44_00545	COG1858	cytochrome C peroxidase
ATY44_00610	COG0513	Belongs to the DEAD box helicase family
ATY44_00620	COG3039	Transposase
ATY44_00640	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY44_00690	COG1136	(ABC) transporter
ATY44_00705	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_00730	COG1272	protein, Hemolysin III
ATY44_00735	COG1205	dead DEAH box helicase
ATY44_00735	COG1111	helicase
ATY44_00790	COG0070	glutamate synthase
ATY44_00790	COG0069	glutamate synthase activity
ATY44_00790	COG0067	glutamate synthase
ATY44_00795	COG0493	'glutamate synthase
ATY44_00815	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_00835	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY44_00840	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY44_00845	COG1609	Transcriptional regulator
ATY44_00870	COG0366	Alpha amylase catalytic
ATY44_00875	COG0366	Alpha amylase catalytic
ATY44_00895	COG3328	transposase activity
ATY44_00920	COG0606	chelatase, subunit chli
ATY44_00960	COG1166	arginine decarboxylase activity
ATY44_00975	COG3501	Rhs element vgr protein
ATY44_01030	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_01055	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY44_01070	COG0210	DNA helicase
ATY44_01090	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY44_01125	COG2937	Belongs to the GPAT DAPAT family
ATY44_01145	COG2963	transposase activity
ATY44_01150	COG3328	transposase activity
ATY44_01200	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY44_01210	COG1119	ATPase activity
ATY44_01225	COG1125	glycine betaine transport
ATY44_01225	COG0517	IMP dehydrogenase activity
ATY44_01240	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY44_01245	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY44_01250	COG3550	peptidyl-serine autophosphorylation
ATY44_01255	COG1396	sequence-specific DNA binding
ATY44_01275	COG0489	protein tyrosine kinase activity
ATY44_01280	COG2062	phosphohistidine phosphatase, SixA
ATY44_01290	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY44_01340	COG0174	glutamine synthetase
ATY44_01345	COG0347	Belongs to the P(II) protein family
ATY44_01350	COG0004	ammonium transporteR
ATY44_01355	COG3852	Histidine kinase
ATY44_01360	COG2204	response regulator
ATY44_01365	COG2032	superoxide dismutase activity
ATY44_01370	COG2032	superoxide dismutase activity
ATY44_01430	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY44_01435	COG1074	ATP-dependent DNA helicase activity
ATY44_01445	COG3549	Plasmid maintenance system killer
ATY44_01520	COG1764	response to oxidative stress
ATY44_01525	COG1846	Transcriptional regulator
ATY44_01580	COG3293	Transposase
ATY44_01610	COG2211	Major facilitator Superfamily
ATY44_01630	COG3693	PFAM glycoside hydrolase, family 10
ATY44_01635	COG3693	PFAM glycoside hydrolase, family 10
ATY44_01660	COG0246	Mannitol dehydrogenase
ATY44_01665	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY44_01675	COG4948	Mandelate Racemase Muconate Lactonizing
ATY44_01685	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY44_01700	COG0037	tRNA processing
ATY44_01705	COG2974	May be involved in recombination
ATY44_01725	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY44_01735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY44_01745	COG0805	protein transport
ATY44_01755	COG0519	Catalyzes the synthesis of GMP from XMP
ATY44_01755	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY44_01770	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY44_01775	COG0752	glycyl-tRNA synthetase alpha subunit
ATY44_01785	COG0457	Tetratricopeptide repeat
ATY44_01790	COG4771	TonB-dependent receptor
ATY44_01805	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY44_01815	COG0697	spore germination
ATY44_01825	COG0523	cobalamin synthesis protein
ATY44_01885	COG1960	acyl-CoA dehydrogenase activity
ATY44_01890	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY44_01905	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_01960	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY44_02000	COG0084	hydrolase, TatD family'
ATY44_02010	COG0583	DNA-binding transcription factor activity
ATY44_02015	COG2814	Major facilitator Superfamily
ATY44_02025	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY44_02030	COG1902	pentaerythritol trinitrate reductase activity
ATY44_02050	COG0745	RESPONSE REGULATOR receiver
ATY44_02055	COG2205	protein histidine kinase activity
ATY44_02060	COG2205	protein histidine kinase activity
ATY44_02070	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY44_02075	COG0583	DNA-binding transcription factor activity
ATY44_02105	COG0702	epimerase
ATY44_02110	COG1733	regulation of RNA biosynthetic process
ATY44_02175	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATY44_02190	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY44_02225	COG2911	Protein conserved in bacteria
ATY44_02230	COG0729	surface antigen
ATY44_02240	COG2963	transposase activity
ATY44_02250	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY44_02255	COG3118	belongs to the thioredoxin family
ATY44_02265	COG2884	Cell division ATP-binding protein ftsE
ATY44_02270	COG2177	Part of the ABC transporter FtsEX involved in
ATY44_02275	COG2201	protein-glutamate methylesterase activity
ATY44_02285	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY44_02295	COG1252	NADH dehydrogenase
ATY44_02320	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY44_02335	COG4771	TonB-dependent receptor
ATY44_02345	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY44_02385	COG3386	PFAM SMP-30 Gluconolaconase
ATY44_02400	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY44_02435	COG2353	YceI-like domain
ATY44_02525	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ATY44_02580	COG3039	Transposase
ATY44_02610	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY44_02640	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY44_02645	COG0318	PFAM AMP-dependent synthetase and ligase
ATY44_02655	COG0596	Alpha beta hydrolase
ATY44_02670	COG3177	Filamentation induced by cAMP protein fic
ATY44_02675	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY44_02690	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY44_02715	COG4191	Histidine kinase
ATY44_02720	COG0028	Belongs to the TPP enzyme family
ATY44_02740	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY44_02765	COG5383	Protein conserved in bacteria
ATY44_02775	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY44_02780	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY44_02785	COG1473	amidohydrolase
ATY44_02800	COG3328	transposase activity
ATY44_02900	COG0358	DNA primase activity
ATY44_02905	COG1295	ribonuclease BN
ATY44_02910	COG3293	Transposase
ATY44_02920	COG1610	YqeY-like protein
ATY44_02925	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY44_02935	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY44_02945	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_02995	COG2133	pyrroloquinoline quinone binding
ATY44_03005	COG4682	membrane
ATY44_03020	COG3293	Transposase
ATY44_03030	COG0531	amino acid
ATY44_03055	COG4948	Mandelate Racemase Muconate Lactonizing
ATY44_03065	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY44_03070	COG3039	Transposase
ATY44_03075	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY44_03110	COG3039	Transposase
ATY44_03160	COG0183	Belongs to the thiolase family
ATY44_03200	COG3104	oligopeptide transport
ATY44_03225	COG1320	monovalent cation:proton antiporter activity
ATY44_03230	COG2212	antiporter activity
ATY44_03240	COG0651	ATP synthesis coupled electron transport
ATY44_03245	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY44_03250	COG2111	Na H antiporter
ATY44_03250	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY44_03265	COG3227	Zinc metalloprotease (Elastase)
ATY44_03295	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY44_03305	COG0456	acetyltransferase
ATY44_03325	COG2963	transposase activity
ATY44_03340	COG4221	oxidoreductase activity
ATY44_03400	COG0697	spore germination
ATY44_03405	COG4305	rare lipoprotein A
ATY44_03410	COG5297	Belongs to the glycosyl hydrolase family 6
ATY44_03415	COG1113	amino acid transport
ATY44_03425	COG0598	Magnesium transport protein CorA
ATY44_03465	COG3293	Transposase
ATY44_03495	COG0840	transmembrane signaling receptor activity
ATY44_03505	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY44_03505	COG5297	Belongs to the glycosyl hydrolase family 6
ATY44_03510	COG0659	secondary active sulfate transmembrane transporter activity
ATY44_03520	COG3706	GGDEF domain
ATY44_03540	COG3293	Transposase
ATY44_03555	COG3275	phosphorelay sensor kinase activity
ATY44_03590	COG1505	serine-type exopeptidase activity
ATY44_03630	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY44_03655	COG0308	aminopeptidase N
ATY44_03660	COG2199	diguanylate cyclase activity
ATY44_03715	COG3039	Transposase
ATY44_03725	COG1077	Cell shape determining protein MreB Mrl
ATY44_03730	COG1792	Involved in formation and maintenance of cell shape
ATY44_03745	COG0772	Belongs to the SEDS family
ATY44_03780	COG3501	Rhs element vgr protein
ATY44_03800	COG2951	lytic endotransglycosylase activity
ATY44_03805	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY44_03815	COG1686	Belongs to the peptidase S11 family
ATY44_03850	COG1051	belongs to the nudix hydrolase family
ATY44_03850	COG1056	cytidyltransferase-related domain
ATY44_03890	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY44_03895	COG0673	inositol 2-dehydrogenase activity
ATY44_03900	COG2823	Periplasmic or secreted lipoprotein
ATY44_03905	COG4251	negative regulation of phosphorylation
ATY44_03910	COG0784	Response regulator, receiver
ATY44_03915	COG4191	Histidine kinase
ATY44_03920	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY44_03940	COG2801	Transposase and inactivated derivatives
ATY44_03950	COG2963	transposase activity
ATY44_03985	COG1609	Transcriptional regulator
ATY44_03990	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY44_03995	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY44_04005	COG1215	transferase activity, transferring glycosyl groups
ATY44_04010	COG1649	PFAM Uncharacterised BCR, COG1649
ATY44_04010	COG0726	polysaccharide deacetylase
ATY44_04035	COG3293	Transposase
ATY44_04105	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY44_04110	COG3039	Transposase
ATY44_04115	COG2963	transposase activity
ATY44_04125	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY44_04195	COG2205	protein histidine kinase activity
ATY44_04200	COG0745	RESPONSE REGULATOR receiver
ATY44_04250	COG0488	(ABC) transporter
ATY44_04290	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY44_04290	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY44_04320	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY44_04345	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY44_04350	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY44_04360	COG2205	protein histidine kinase activity
ATY44_04365	COG0745	RESPONSE REGULATOR receiver
ATY44_04370	COG0277	FAD linked oxidase domain protein
ATY44_04375	COG1988	membrane-bound metal-dependent
ATY44_04415	COG3116	cell division
ATY44_04430	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY44_04455	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY44_04460	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY44_04485	COG4942	peptidase
ATY44_04485	COG1388	LysM domain
ATY44_04500	COG0494	nUDIX hydrolase
ATY44_04515	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY44_04525	COG0604	alcohol dehydrogenase
ATY44_04525	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_04525	COG3321	synthase
ATY44_04575	COG2226	methyltransferase
ATY44_04615	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY44_04625	COG4106	trans-aconitate 2-methyltransferase activity
ATY44_04630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY44_04645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY44_04650	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY44_04660	COG0667	Aldo Keto reductase
ATY44_04670	COG3293	Transposase
ATY44_04700	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY44_04710	COG2175	clavaminate synthase activity
ATY44_04720	COG4181	ATPase activity
ATY44_04735	COG0642	Histidine kinase
ATY44_04750	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY44_04805	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY44_04820	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY44_04825	COG2096	Adenosyltransferase
ATY44_04835	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY44_04840	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY44_04880	COG0583	DNA-binding transcription factor activity
ATY44_04885	COG0318	PFAM AMP-dependent synthetase and ligase
ATY44_04895	COG1024	Enoyl-CoA hydratase
ATY44_04915	COG3386	PFAM SMP-30 Gluconolaconase
ATY44_04965	COG3293	Transposase
ATY44_04975	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_05000	COG3706	GGDEF domain
ATY44_05000	COG0745	RESPONSE REGULATOR receiver
ATY44_05025	COG2197	response regulator
ATY44_05065	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY44_05070	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY44_05075	COG0583	DNA-binding transcription factor activity
ATY44_05080	COG3634	alkyl hydroperoxide reductase activity
ATY44_05090	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY44_05130	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY44_05130	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY44_05145	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY44_05165	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY44_05170	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY44_05195	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY44_05205	COG1404	Belongs to the peptidase S8 family
ATY44_05210	COG1404	Belongs to the peptidase S8 family
ATY44_05215	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY44_05245	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY44_05265	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY44_05305	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY44_05320	COG0012	GTP binding
ATY44_05350	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY44_05355	COG0250	Participates in transcription elongation, termination and antitermination
ATY44_05390	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY44_05430	COG0089	rRNA binding
ATY44_05455	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY44_05460	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY44_05465	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY44_05475	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ATY44_05485	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY44_05500	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ATY44_05505	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY44_05510	COG1841	ribosomal large subunit assembly
ATY44_05520	COG0201	protein transport
ATY44_05525	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY44_05540	COG0202	RNA polymerase activity
ATY44_05545	COG0203	ribosomal protein L17
ATY44_05570	COG2963	transposase activity
ATY44_05615	COG3551	Protein conserved in bacteria
ATY44_05645	COG2194	sulfuric ester hydrolase activity
ATY44_05655	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY44_05660	COG0745	RESPONSE REGULATOR receiver
ATY44_05665	COG0642	Histidine kinase
ATY44_05675	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY44_05680	COG2894	cell division
ATY44_05705	COG4585	Histidine kinase
ATY44_05710	COG2197	response regulator
ATY44_05725	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY44_05755	COG2963	transposase activity
ATY44_05805	COG3501	Rhs element vgr protein
ATY44_05815	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY44_05825	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY44_05830	COG3501	Rhs element vgr protein
ATY44_05875	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY44_05880	COG3501	Rhs element vgr protein
ATY44_05930	COG3501	Rhs element vgr protein
ATY44_05935	COG2801	Transposase and inactivated derivatives
ATY44_05940	COG2963	transposase activity
ATY44_05955	COG3501	Rhs element vgr protein
ATY44_05980	COG3501	Rhs element vgr protein
ATY44_06005	COG3501	Rhs element vgr protein
ATY44_06010	COG3501	Rhs element vgr protein
ATY44_06075	COG3501	Rhs element vgr protein
ATY44_06110	COG0732	type I restriction modification DNA specificity domain
ATY44_06115	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY44_06125	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY44_06145	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY44_06150	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY44_06155	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY44_06160	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY44_06255	COG0587	DNA-directed DNA polymerase activity
ATY44_06270	COG1297	OPT oligopeptide transporter protein
ATY44_06285	COG0823	Involved in the tonB-independent uptake of proteins
ATY44_06285	COG1506	peptidase
ATY44_06310	COG1917	Cupin 2, conserved barrel domain protein
ATY44_06310	COG2207	Transcriptional regulator
ATY44_06330	COG0753	catalase activity
ATY44_06345	COG3039	Transposase
ATY44_06370	COG0126	phosphoglycerate kinase activity
ATY44_06380	COG0469	pyruvate kinase activity
ATY44_06385	COG3588	fructose-bisphosphate aldolase
ATY44_06390	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY44_06425	COG2198	Histidine kinase
ATY44_06425	COG0784	Response regulator, receiver
ATY44_06425	COG2205	protein histidine kinase activity
ATY44_06455	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY44_06465	COG2895	sulfate adenylyltransferase (ATP) activity
ATY44_06465	COG0529	Catalyzes the synthesis of activated sulfate
ATY44_06475	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY44_06480	COG0308	aminopeptidase N
ATY44_06510	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY44_06515	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY44_06540	COG1970	mechanosensitive ion channel activity
ATY44_06550	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_06585	COG3273	potassium ion transport
ATY44_06585	COG0471	metal ion transport
ATY44_06630	COG2963	transposase activity
ATY44_06665	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_06670	COG3293	Transposase
ATY44_06695	COG3039	Transposase
ATY44_06710	COG3293	Transposase
ATY44_06720	COG3039	Transposase
ATY44_06765	COG3293	Transposase
ATY44_06780	COG3118	belongs to the thioredoxin family
ATY44_06805	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY44_06855	COG3039	Transposase
ATY44_06865	COG2968	Membrane
ATY44_06875	COG1530	ribonuclease E activity
ATY44_06880	COG3164	Protein of unknown function
ATY44_06890	COG0312	modulator of DNA gyrase
ATY44_06900	COG0312	modulator of DNA gyrase
ATY44_06920	COG0142	geranyltranstransferase activity
ATY44_06930	COG0037	tRNA processing
ATY44_06935	COG1785	Belongs to the alkaline phosphatase family
ATY44_06940	COG1301	dicarboxylic acid transport
ATY44_06955	COG0791	NLP P60 protein
ATY44_06960	COG0791	NLP P60 protein
ATY44_06965	COG1047	Peptidyl-prolyl cis-trans
ATY44_06970	COG2311	Membrane
ATY44_06975	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY44_07010	COG0489	protein tyrosine kinase activity
ATY44_07030	COG0412	Dienelactone hydrolase
ATY44_07040	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY44_07060	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_07065	COG0433	COG0433 Predicted ATPase
ATY44_07085	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY44_07095	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY44_07100	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY44_07130	COG0133	tryptophan synthase activity
ATY44_07175	COG3293	Transposase
ATY44_07210	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY44_07230	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY44_07235	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY44_07240	COG1034	ATP synthesis coupled electron transport
ATY44_07245	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY44_07260	COG0713	ATP synthesis coupled electron transport
ATY44_07275	COG1007	ATP synthesis coupled electron transport
ATY44_07290	COG0195	Participates in both transcription termination and antitermination
ATY44_07310	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY44_07345	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY44_07350	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY44_07360	COG2095	MarC family integral membrane protein
ATY44_07370	COG1611	Belongs to the LOG family
ATY44_07375	COG3039	Transposase
ATY44_07415	COG4969	Belongs to the N-Me-Phe pilin family
ATY44_07420	COG0556	nucleotide-excision repair
ATY44_07445	COG2963	transposase activity
ATY44_07460	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY44_07465	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY44_07470	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY44_07475	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ATY44_07485	COG0776	regulation of translation
ATY44_07530	COG0438	transferase activity, transferring glycosyl groups
ATY44_07535	COG0438	transferase activity, transferring glycosyl groups
ATY44_07660	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY44_07685	COG4191	Histidine kinase
ATY44_07685	COG0784	Response regulator, receiver
ATY44_07705	COG0552	protein localization to endoplasmic reticulum
ATY44_07715	COG3938	Belongs to the proline racemase family
ATY44_07720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY44_07735	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY44_07745	COG0006	proline dipeptidase activity
ATY44_07760	COG0531	amino acid
ATY44_07810	COG4206	TonB-dependent receptor
ATY44_07835	COG4206	TonB-dependent receptor
ATY44_07890	COG0746	molybdenum cofactor guanylyltransferase activity
ATY44_07915	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY44_07915	COG1648	precorrin-2 dehydrogenase activity
ATY44_07985	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY44_08015	COG3293	Transposase
ATY44_08025	COG1530	ribonuclease E activity
ATY44_08035	COG3064	Membrane
ATY44_08040	COG0428	transporter
ATY44_08045	COG0428	transporter
ATY44_08070	COG2801	Transposase and inactivated derivatives
ATY44_08125	COG3039	Transposase
ATY44_08190	COG3039	Transposase
ATY44_08200	COG3501	Rhs element vgr protein
ATY44_08235	COG0631	protein serine/threonine phosphatase activity
ATY44_08240	COG0515	serine threonine protein kinase
ATY44_08265	COG1858	cytochrome C peroxidase
ATY44_08275	COG4644	lycopene metabolic process
ATY44_08290	COG2963	transposase activity
ATY44_08320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY44_08325	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY44_08335	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY44_08340	COG2201	protein-glutamate methylesterase activity
ATY44_08370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY44_08390	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY44_08405	COG1595	DNA-templated transcription, initiation
ATY44_08455	COG2244	polysaccharide biosynthetic process
ATY44_08485	COG2264	protein methyltransferase activity
ATY44_08495	COG0438	transferase activity, transferring glycosyl groups
ATY44_08510	COG1136	(ABC) transporter
ATY44_08515	COG1132	(ABC) transporter
ATY44_08520	COG0477	Major facilitator Superfamily
ATY44_08525	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY44_08540	COG1253	flavin adenine dinucleotide binding
ATY44_08550	COG0306	phosphate transporter
ATY44_08610	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ATY44_08625	COG2840	Smr protein MutS2
ATY44_08640	COG1238	metal cluster binding
ATY44_08655	COG1534	Rna-binding protein
ATY44_08665	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY44_08670	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY44_08680	COG1923	regulation of RNA biosynthetic process
ATY44_08685	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY44_08690	COG1546	Belongs to the CinA family
ATY44_08710	COG2137	regulation of response to DNA damage stimulus
ATY44_08720	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY44_08740	COG0305	Participates in initiation and elongation during chromosome replication
ATY44_08745	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY44_08765	COG1741	Belongs to the pirin family
ATY44_08770	COG0583	DNA-binding transcription factor activity
ATY44_08800	COG0351	phosphomethylpyrimidine kinase
ATY44_08810	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY44_08815	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY44_08830	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY44_08840	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY44_08845	COG3734	2-keto-3-deoxy-galactonokinase
ATY44_08860	COG0800	Aldolase
ATY44_08875	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY44_08890	COG1070	Carbohydrate kinase
ATY44_08900	COG0477	Major facilitator Superfamily
ATY44_08970	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY44_08975	COG2258	MOSC domain
ATY44_08980	COG3293	Transposase
ATY44_08990	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY44_08995	COG0505	Belongs to the CarA family
ATY44_09005	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY44_09010	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY44_09020	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY44_09060	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY44_09080	COG2198	Histidine kinase
ATY44_09080	COG0784	Response regulator, receiver
ATY44_09080	COG2205	protein histidine kinase activity
ATY44_09085	COG1024	Enoyl-CoA hydratase
ATY44_09090	COG0318	PFAM AMP-dependent synthetase and ligase
ATY44_09120	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY44_09145	COG0840	transmembrane signaling receptor activity
ATY44_09165	COG0835	chemotaxis
ATY44_09175	COG0840	transmembrane signaling receptor activity
ATY44_09180	COG0840	transmembrane signaling receptor activity
ATY44_09185	COG0840	transmembrane signaling receptor activity
ATY44_09190	COG0840	transmembrane signaling receptor activity
ATY44_09195	COG0840	transmembrane signaling receptor activity
ATY44_09205	COG3293	Transposase
ATY44_09215	COG0840	transmembrane signaling receptor activity
ATY44_09245	COG0745	RESPONSE REGULATOR receiver
ATY44_09255	COG0835	chemotaxis
ATY44_09260	COG1192	Involved in chromosome partitioning
ATY44_09265	COG1360	Flagellar Motor Protein
ATY44_09270	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY44_09290	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY44_09300	COG4771	TonB-dependent receptor
ATY44_09330	COG3039	Transposase
ATY44_09360	COG3039	Transposase
ATY44_09375	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY44_09375	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY44_09380	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY44_09385	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY44_09385	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY44_09390	COG1609	Transcriptional regulator
ATY44_09410	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY44_09415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY44_09425	COG2902	Dehydrogenase
ATY44_09430	COG3039	Transposase
ATY44_09440	COG5002	protein histidine kinase activity
ATY44_09440	COG2205	protein histidine kinase activity
ATY44_09440	COG0784	Response regulator, receiver
ATY44_09445	COG2733	membrane
ATY44_09455	COG1121	(ABC) transporter
ATY44_09480	COG0243	molybdopterin cofactor binding
ATY44_09490	COG0477	Major facilitator Superfamily
ATY44_09495	COG3706	GGDEF domain
ATY44_09495	COG0745	RESPONSE REGULATOR receiver
ATY44_09500	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY44_09505	COG0174	glutamine synthetase
ATY44_09550	COG1177	transmembrane transport
ATY44_09560	COG1012	belongs to the aldehyde dehydrogenase family
ATY44_09575	COG4535	Mg2 and Co2 transporter CorC
ATY44_09595	COG1702	phosphate starvation-inducible protein PhoH
ATY44_09620	COG0741	lytic transglycosylase activity
ATY44_09625	COG0723	plastoquinol--plastocyanin reductase activity
ATY44_09630	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY44_09635	COG2857	Cytochrome c1
ATY44_09640	COG0625	glutathione transferase activity
ATY44_09645	COG2969	positive regulation of protein catabolic process
ATY44_09675	COG3328	transposase activity
ATY44_09680	COG3039	Transposase
ATY44_09735	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY44_09755	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY44_09760	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY44_09760	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY44_09765	COG0802	atpase or kinase
ATY44_09770	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY44_09795	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_09815	COG2081	HI0933 family
ATY44_09820	COG4681	YaeQ
ATY44_09835	COG0625	glutathione transferase activity
ATY44_09845	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ATY44_09855	COG0513	Belongs to the DEAD box helicase family
ATY44_09885	COG0483	inositol monophosphate 1-phosphatase activity
ATY44_09900	COG5001	Diguanylate cyclase
ATY44_09900	COG3300	MHYT domain
ATY44_09905	COG1509	lysine 2,3-aminomutase activity
ATY44_09920	COG0402	S-adenosylhomocysteine deaminase activity
ATY44_09955	COG4677	pectinesterase activity
ATY44_09975	COG3039	Transposase
ATY44_09995	COG4302	ethanolamine ammonia-lyase activity
ATY44_10005	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY44_10020	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY44_10035	COG2166	iron-sulfur cluster assembly
ATY44_10050	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY44_10055	COG0137	argininosuccinate synthase activity
ATY44_10065	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY44_10070	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY44_10130	COG1294	oxidase, subunit
ATY44_10135	COG1271	oxidase subunit
ATY44_10145	COG4988	ABC transporter
ATY44_10150	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY44_10280	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_10295	COG0643	Histidine kinase
ATY44_10295	COG2198	Histidine kinase
ATY44_10315	COG0455	bacterial-type flagellum organization
ATY44_10325	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY44_10340	COG5001	Diguanylate cyclase
ATY44_10340	COG3300	MHYT domain
ATY44_10345	COG3300	MHYT domain
ATY44_10345	COG5001	Diguanylate cyclase
ATY44_10350	COG1684	flagellar biosynthetic protein fliR
ATY44_10355	COG1987	bacterial-type flagellum assembly
ATY44_10365	COG3190	flagellar
ATY44_10415	COG1677	Flagellar hook-basal body complex protein FliE
ATY44_10450	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_10460	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY44_10475	COG2204	response regulator
ATY44_10480	COG2201	protein-glutamate methylesterase activity
ATY44_10510	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY44_10515	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY44_10545	COG4786	Flagellar basal body rod
ATY44_10555	COG4787	bacterial-type flagellum-dependent cell motility
ATY44_10560	COG1749	Flagellar hook protein flgE
ATY44_10565	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY44_10570	COG1558	bacterial-type flagellum-dependent cell motility
ATY44_10580	COG0835	chemotaxis
ATY44_10580	COG0784	Response regulator, receiver
ATY44_10600	COG5002	protein histidine kinase activity
ATY44_10610	COG4585	Histidine kinase
ATY44_10615	COG5001	Diguanylate cyclase
ATY44_10650	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY44_10655	COG0542	response to heat
ATY44_10660	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY44_10685	COG0492	ferredoxin-NADP+ reductase activity
ATY44_10690	COG1674	ftsk spoiiie
ATY44_10710	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY44_10730	COG0038	chloride channel
ATY44_10735	COG0183	Belongs to the thiolase family
ATY44_10740	COG1024	Enoyl-CoA hydratase
ATY44_10740	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY44_10750	COG0105	UTP biosynthetic process
ATY44_10765	COG1426	Protein conserved in bacteria
ATY44_10775	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY44_10785	COG0303	'Molybdopterin
ATY44_10820	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_10855	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY44_10865	COG3039	Transposase
ATY44_10900	COG0531	amino acid
ATY44_10905	COG0531	amino acid
ATY44_10915	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY44_10920	COG0277	FAD linked oxidase domain protein
ATY44_10985	COG0436	Aminotransferase
ATY44_11010	COG1187	pseudouridine synthase activity
ATY44_11015	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY44_11020	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY44_11025	COG2350	Protein conserved in bacteria
ATY44_11055	COG1175	transmembrane transport
ATY44_11060	COG0395	ABC-type sugar transport system, permease component
ATY44_11085	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY44_11090	COG2957	Belongs to the agmatine deiminase family
ATY44_11100	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY44_11110	COG0539	negative regulation of cytoplasmic translation
ATY44_11125	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY44_11130	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY44_11140	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY44_11145	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY44_11145	COG0475	glutathione-regulated potassium exporter activity
ATY44_11200	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY44_11205	COG0583	DNA-binding transcription factor activity
ATY44_11225	COG0583	DNA-binding transcription factor activity
ATY44_11230	COG0583	DNA-binding transcription factor activity
ATY44_11245	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY44_11250	COG1321	iron dependent repressor
ATY44_11255	COG0590	tRNA wobble adenosine to inosine editing
ATY44_11265	COG0668	transmembrane transport
ATY44_11290	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_11295	COG1183	phosphatidylcholine synthase activity
ATY44_11305	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY44_11320	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY44_11320	COG0723	plastoquinol--plastocyanin reductase activity
ATY44_11330	COG2183	response to ionizing radiation
ATY44_11340	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY44_11355	COG0671	phosphoesterase, PA-phosphatase related
ATY44_11370	COG1794	racemase activity, acting on amino acids and derivatives
ATY44_11375	COG0697	spore germination
ATY44_11400	COG1012	belongs to the aldehyde dehydrogenase family
ATY44_11435	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY44_11450	COG0124	histidyl-tRNA synthetase
ATY44_11505	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY44_11505	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY44_11575	COG3293	Transposase
ATY44_11620	COG3293	Transposase
ATY44_11720	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY44_11745	COG0811	peptide transport
ATY44_11770	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY44_11785	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY44_11800	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY44_11810	COG0354	folic acid binding
ATY44_11820	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY44_11830	COG0363	glucosamine-6-phosphate deaminase activity
ATY44_11835	COG0129	dihydroxy-acid dehydratase activity
ATY44_11840	COG0800	Aldolase
ATY44_11855	COG3293	Transposase
ATY44_11880	COG5002	protein histidine kinase activity
ATY44_11880	COG2205	protein histidine kinase activity
ATY44_11880	COG0784	Response regulator, receiver
ATY44_11900	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY44_11905	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ATY44_11910	COG0431	NADPH-dependent FMN reductase
ATY44_11935	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY44_11960	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY44_11985	COG1247	-acetyltransferase
ATY44_11995	COG3293	Transposase
ATY44_12015	COG3706	GGDEF domain
ATY44_12070	COG0386	Belongs to the glutathione peroxidase family
ATY44_12155	COG5001	Diguanylate cyclase
ATY44_12155	COG4251	negative regulation of phosphorylation
ATY44_12155	COG3706	GGDEF domain
ATY44_12155	COG2203	Gaf domain
ATY44_12165	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY44_12200	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ATY44_12225	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY44_12270	COG4566	intracellular signal transduction
ATY44_12285	COG2963	transposase activity
ATY44_12300	COG1605	Chorismate mutase
ATY44_12300	COG0077	Prephenate dehydratase
ATY44_12310	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY44_12360	COG2986	histidine ammonia-lyase
ATY44_12370	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY44_12390	COG2963	transposase activity
ATY44_12410	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY44_12425	COG3115	cell septum assembly
ATY44_12450	COG0316	Belongs to the HesB IscA family
ATY44_12485	COG0288	reversible hydration of carbon dioxide
ATY44_12510	COG2925	Exonuclease
ATY44_12520	COG0667	Aldo Keto reductase
ATY44_12580	COG0494	nUDIX hydrolase
ATY44_12590	COG1024	Enoyl-CoA hydratase
ATY44_12600	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY44_12620	COG3293	Transposase
ATY44_12640	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY44_12645	COG0573	inorganic phosphate transmembrane transporter activity
ATY44_12660	COG0704	Plays a role in the regulation of phosphate uptake
ATY44_12670	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY44_12720	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY44_12730	COG1862	Preprotein translocase
ATY44_12780	COG3039	Transposase
ATY44_12820	COG3501	Rhs element vgr protein
ATY44_12840	COG3501	Rhs element vgr protein
ATY44_12895	COG3293	Transposase
ATY44_12910	COG0405	Gamma-glutamyltransferase
ATY44_12915	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY44_12935	COG0742	ribosomal rna small subunit methyltransferase
ATY44_13005	COG0583	DNA-binding transcription factor activity
ATY44_13015	COG3039	Transposase
ATY44_13040	COG2963	transposase activity
ATY44_13045	COG2801	Transposase and inactivated derivatives
ATY44_13085	COG1278	Cold shock
ATY44_13160	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY44_13170	COG1862	Preprotein translocase
ATY44_13230	COG1278	Cold shock
ATY44_13280	COG3039	Transposase
ATY44_13290	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY44_13300	COG0557	exoribonuclease II activity
ATY44_13320	COG1960	acyl-CoA dehydrogenase activity
ATY44_13330	COG1410	methionine synthase
ATY44_13330	COG0646	methionine synthase
ATY44_13335	COG1410	methionine synthase
ATY44_13335	COG0646	methionine synthase
ATY44_13345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY44_13385	COG0386	Belongs to the glutathione peroxidase family
ATY44_13390	COG1725	Transcriptional regulator
ATY44_13395	COG1131	(ABC) transporter
ATY44_13435	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_13445	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_13455	COG3293	Transposase
ATY44_13495	COG2850	peptidyl-arginine hydroxylation
ATY44_13530	COG1132	(ABC) transporter
ATY44_13535	COG0583	DNA-binding transcription factor activity
ATY44_13550	COG0287	Prephenate dehydrogenase
ATY44_13550	COG1605	Chorismate mutase
ATY44_13555	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY44_13580	COG0497	DNA recombination
ATY44_13590	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY44_13595	COG2914	Belongs to the UPF0125 (RnfH) family
ATY44_13625	COG1960	acyl-CoA dehydrogenase activity
ATY44_13655	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_13675	COG3293	Transposase
ATY44_13690	COG2814	Major facilitator Superfamily
ATY44_13695	COG1566	PFAM secretion protein HlyD family protein
ATY44_13710	COG2207	Transcriptional regulator
ATY44_13740	COG4774	siderophore transport
ATY44_13755	COG0367	asparagine synthase
ATY44_13770	COG1393	Belongs to the ArsC family
ATY44_13790	COG0024	Methionine aminopeptidase
ATY44_13855	COG0575	Belongs to the CDS family
ATY44_13865	COG0750	zinc metalloprotease
ATY44_13915	COG4771	TonB-dependent receptor
ATY44_13920	COG1131	(ABC) transporter
ATY44_14020	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY44_14035	COG2040	homocysteine
ATY44_14040	COG0833	amino acid
ATY44_14070	COG2878	Part of a membrane complex involved in electron transport
ATY44_14090	COG1595	DNA-templated transcription, initiation
ATY44_14115	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY44_14130	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY44_14135	COG0251	oxidation-reduction process
ATY44_14145	COG0392	lysyltransferase activity
ATY44_14145	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY44_14175	COG2814	Major facilitator Superfamily
ATY44_14180	COG1902	pentaerythritol trinitrate reductase activity
ATY44_14190	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY44_14205	COG1047	Peptidyl-prolyl cis-trans
ATY44_14240	COG3039	Transposase
ATY44_14245	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY44_14260	COG1451	nucleotide metabolic process
ATY44_14275	COG0183	Belongs to the thiolase family
ATY44_14290	COG0745	RESPONSE REGULATOR receiver
ATY44_14290	COG3706	GGDEF domain
ATY44_14305	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY44_14305	COG1793	dna ligase
ATY44_14315	COG1793	dna ligase
ATY44_14320	COG1201	RNA secondary structure unwinding
ATY44_14340	COG1278	Cold shock
ATY44_14345	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY44_14360	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY44_14365	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY44_14370	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY44_14440	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY44_14455	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY44_14455	COG1024	Enoyl-CoA hydratase
ATY44_14475	COG1024	Enoyl-CoA hydratase
ATY44_14480	COG1960	acyl-CoA dehydrogenase activity
ATY44_14505	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY44_14540	COG3293	Transposase
ATY44_14565	COG2353	YceI-like domain
ATY44_14575	COG2353	YceI-like domain
ATY44_14585	COG1760	l-serine dehydratase
ATY44_14595	COG0626	cystathionine gamma-synthase activity
ATY44_14600	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY44_14605	COG0739	heme binding
ATY44_14615	COG1272	protein, Hemolysin III
ATY44_14630	COG0517	IMP dehydrogenase activity
ATY44_14630	COG0516	GMP reductase activity
ATY44_14635	COG0463	Glycosyl transferase, family 2
ATY44_14645	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY44_14655	COG4771	TonB-dependent receptor
ATY44_14660	COG1309	transcriptional regulator
ATY44_14670	COG1960	acyl-CoA dehydrogenase activity
ATY44_14710	COG0330	HflC and HflK could
ATY44_14720	COG3956	TIGRFAM MazG family protein
ATY44_14730	COG0494	nUDIX hydrolase
ATY44_14740	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY44_14745	COG0837	glucose binding
ATY44_14760	COG3858	chitin binding
ATY44_14760	COG1388	LysM domain
ATY44_14765	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY44_14775	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY44_14830	COG3537	Alpha-1,2-mannosidase
ATY44_14870	COG3142	Participates in the control of copper homeostasis
ATY44_14875	COG1446	asparaginase
ATY44_14885	COG2304	oxidoreductase activity
ATY44_14925	COG0840	transmembrane signaling receptor activity
ATY44_14930	COG0835	chemotaxis
ATY44_14945	COG0189	ligase activity
ATY44_14955	COG1397	ADP-ribosylglycohydrolase
ATY44_14965	COG1199	ATP-dependent helicase activity
ATY44_14975	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY44_14990	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY44_15005	COG0535	radical SAM domain protein
ATY44_15010	COG0535	radical SAM domain protein
ATY44_15025	COG0837	glucose binding
ATY44_15030	COG0837	glucose binding
ATY44_15035	COG0837	glucose binding
ATY44_15045	COG1643	Atp-dependent helicase
ATY44_15050	COG0783	Belongs to the Dps family
ATY44_15055	COG0514	ATP-dependent DNA helicase (RecQ)
ATY44_15085	COG3293	Transposase
ATY44_15100	COG0602	queuosine metabolic process
ATY44_15110	COG2885	chlorophyll binding
ATY44_15125	COG0848	biopolymer transport protein
ATY44_15135	COG0824	Thioesterase
ATY44_15235	COG2963	transposase activity
ATY44_15245	COG2801	Transposase and inactivated derivatives
ATY44_15280	COG2801	Transposase and inactivated derivatives
ATY44_15285	COG2963	transposase activity
ATY44_15305	COG3039	Transposase
ATY44_15310	COG3039	Transposase
ATY44_15325	COG3039	Transposase
ATY44_15360	COG3328	transposase activity
ATY44_15370	COG3209	COG3209 Rhs family protein
ATY44_15380	COG3501	Rhs element vgr protein
ATY44_15390	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY44_15395	COG1845	cytochrome c oxidase, subunit III
ATY44_15400	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY44_15430	COG0196	riboflavin kinase activity
ATY44_15435	COG0728	peptidoglycan biosynthetic process
ATY44_15440	COG0268	Binds directly to 16S ribosomal RNA
ATY44_15460	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY44_15465	COG0824	Thioesterase
ATY44_15480	COG1946	Acyl-CoA thioesterase
ATY44_15490	COG1595	DNA-templated transcription, initiation
ATY44_15545	COG1877	trehalose-phosphatase activity
ATY44_15550	COG3387	PFAM Glycoside hydrolase 15-related
ATY44_15575	COG0564	pseudouridine synthase activity
ATY44_15580	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY44_15585	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY44_15585	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY44_15595	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY44_15620	COG2184	nucleotidyltransferase activity
ATY44_15640	COG2194	sulfuric ester hydrolase activity
ATY44_15645	COG4969	Belongs to the N-Me-Phe pilin family
ATY44_15655	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY44_15675	COG3039	Transposase
ATY44_15690	COG3039	Transposase
ATY44_15700	COG3293	Transposase
ATY44_15710	COG1132	(ABC) transporter
ATY44_15740	COG0745	RESPONSE REGULATOR receiver
ATY44_15745	COG5002	protein histidine kinase activity
ATY44_15745	COG5000	phosphorelay sensor kinase activity
ATY44_15750	COG0475	glutathione-regulated potassium exporter activity
ATY44_15775	COG1187	pseudouridine synthase activity
ATY44_15780	COG5002	protein histidine kinase activity
ATY44_15780	COG5001	Diguanylate cyclase
ATY44_15900	COG0415	Belongs to the DNA photolyase family
ATY44_15905	COG0305	Participates in initiation and elongation during chromosome replication
ATY44_15915	COG0367	asparagine synthase
ATY44_15940	COG1960	acyl-CoA dehydrogenase activity
ATY44_15955	COG0084	hydrolase, TatD family'
ATY44_15960	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY44_16000	COG0735	belongs to the Fur family
ATY44_16030	COG3039	Transposase
ATY44_16060	COG3039	Transposase
ATY44_16085	COG2205	protein histidine kinase activity
ATY44_16095	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY44_16105	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY44_16115	COG2198	Histidine kinase
ATY44_16115	COG0643	Histidine kinase
ATY44_16120	COG0840	transmembrane signaling receptor activity
ATY44_16125	COG0835	chemotaxis
ATY44_16130	COG2200	EAL domain
ATY44_16130	COG2202	Pas domain
ATY44_16130	COG2199	diguanylate cyclase activity
ATY44_16135	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY44_16150	COG3590	peptidase
ATY44_16160	COG0588	phosphoglycerate mutase activity
ATY44_16165	COG1515	deoxyribonuclease V activity
ATY44_16175	COG1741	Belongs to the pirin family
ATY44_16215	COG3501	Rhs element vgr protein
ATY44_16225	COG3039	Transposase
ATY44_16245	COG3501	Rhs element vgr protein
ATY44_16260	COG3501	Rhs element vgr protein
ATY44_16270	COG1741	Belongs to the pirin family
ATY44_16275	COG1966	Carbon starvation protein
ATY44_16280	COG2879	small protein
ATY44_16305	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_16305	COG0604	alcohol dehydrogenase
ATY44_16305	COG3321	synthase
ATY44_16310	COG2203	Gaf domain
ATY44_16310	COG3706	GGDEF domain
ATY44_16310	COG4251	negative regulation of phosphorylation
ATY44_16310	COG5001	Diguanylate cyclase
ATY44_16320	COG0629	single-stranded DNA binding
ATY44_16325	COG0142	geranyltranstransferase activity
ATY44_16355	COG0527	aspartate kinase activity
ATY44_16365	COG0384	phenazine biosynthesis protein PhzF
ATY44_16370	COG3293	Transposase
ATY44_16385	COG1764	response to oxidative stress
ATY44_16415	COG0519	Catalyzes the synthesis of GMP from XMP
ATY44_16440	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY44_16495	COG1959	2 iron, 2 sulfur cluster binding
ATY44_16500	COG0719	Fe-S assembly protein
ATY44_16505	COG0396	ATPase activity
ATY44_16510	COG0719	Fe-S assembly protein
ATY44_16515	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY44_16530	COG3039	Transposase
ATY44_16535	COG2963	transposase activity
ATY44_16540	COG2801	Transposase and inactivated derivatives
ATY44_16555	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY44_16575	COG3328	transposase activity
ATY44_16585	COG2963	transposase activity
ATY44_16610	COG0326	Molecular chaperone. Has ATPase activity
ATY44_16615	COG2207	Transcriptional regulator
ATY44_16635	COG0657	acetylesterase activity
ATY44_16635	COG2755	lipolytic protein G-D-S-L family
ATY44_16660	COG0488	(ABC) transporter
ATY44_16700	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY44_16700	COG4651	solute:proton antiporter activity
ATY44_16705	COG2801	Transposase and inactivated derivatives
ATY44_16715	COG4772	TonB-dependent receptor
ATY44_16725	COG4264	IucA IucC family
ATY44_16730	COG2814	Major facilitator Superfamily
ATY44_16740	COG0019	diaminopimelate decarboxylase activity
ATY44_16790	COG4206	TonB-dependent receptor
ATY44_16805	COG2963	transposase activity
ATY44_16820	COG0542	response to heat
ATY44_16865	COG0534	Mate efflux family protein
ATY44_16905	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY44_16915	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY44_16970	COG1555	photosystem II stabilization
ATY44_16975	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY44_16990	COG3178	'Phosphotransferase
ATY44_16995	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY44_17005	COG0628	permease
ATY44_17030	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY44_17055	COG0271	Belongs to the BolA IbaG family
ATY44_17065	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY44_17075	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY44_17080	COG1137	ATPase activity
ATY44_17095	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY44_17115	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY44_17120	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY44_17125	COG2239	Acts as a magnesium transporter
ATY44_17135	COG1294	oxidase, subunit
ATY44_17140	COG1271	oxidase subunit
ATY44_17150	COG1113	amino acid transport
ATY44_17160	COG2197	response regulator
ATY44_17165	COG0531	amino acid
ATY44_17220	COG0789	Transcriptional regulator
ATY44_17240	COG0754	glutathionylspermidine amidase activity
ATY44_17265	COG1842	Phage shock protein A
ATY44_17285	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY44_17295	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY44_17330	COG2201	protein-glutamate methylesterase activity
ATY44_17375	COG2201	protein-glutamate methylesterase activity
ATY44_17400	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY44_17420	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY44_17455	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY44_17460	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY44_17495	COG3039	Transposase
ATY44_17515	COG0745	RESPONSE REGULATOR receiver
ATY44_17520	COG2205	protein histidine kinase activity
ATY44_17535	COG3293	Transposase
ATY44_17540	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY44_17585	COG3453	Protein conserved in bacteria
ATY44_17585	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY44_17590	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY44_17595	COG4149	molybdate abc transporter
ATY44_17600	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY44_17620	COG0642	Histidine kinase
ATY44_17625	COG0745	RESPONSE REGULATOR receiver
ATY44_17635	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_17645	COG1022	Amp-dependent synthetase and ligase
ATY44_17670	COG1376	ErfK ybiS ycfS ynhG family protein
ATY44_17675	COG0739	heme binding
ATY44_17680	COG4773	Receptor
ATY44_17685	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY44_17690	COG1301	dicarboxylic acid transport
ATY44_17705	COG2304	oxidoreductase activity
ATY44_17725	COG0714	Associated with various cellular activities
ATY44_17775	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY44_17795	COG0254	rRNA binding
ATY44_17805	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY44_17815	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY44_17840	COG1561	YicC-like family, N-terminal region
ATY44_17860	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY44_17885	COG0006	proline dipeptidase activity
ATY44_17905	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY44_17915	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ATY44_17925	COG2912	Transglutaminase-like superfamily
ATY44_17930	COG1773	rubredoxin
ATY44_17935	COG0352	thiamine-phosphate diphosphorylase activity
ATY44_17960	COG2801	Transposase and inactivated derivatives
ATY44_17965	COG2963	transposase activity
ATY44_17975	COG0281	malic enzyme
ATY44_17975	COG0280	phosphate acetyltransferase
ATY44_17990	COG4191	Histidine kinase
ATY44_18005	COG0583	DNA-binding transcription factor activity
ATY44_18020	COG2197	response regulator
ATY44_18025	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY44_18030	COG0642	Histidine kinase
ATY44_18045	COG2851	Citrate transporter
ATY44_18050	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_18055	COG1609	Transcriptional regulator
ATY44_18105	COG0726	polysaccharide deacetylase
ATY44_18110	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY44_18145	COG0242	peptide deformylase activity
ATY44_18165	COG0714	Associated with various cellular activities
ATY44_18185	COG0537	adenosine 5'-monophosphoramidase activity
ATY44_18210	COG0314	molybdopterin synthase activity
ATY44_18215	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY44_18230	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY44_18235	COG1234	tRNA 3'-trailer cleavage
ATY44_18245	COG0859	PFAM glycosyl transferase family 9
ATY44_18255	COG0582	viral genome integration into host DNA
ATY44_18310	COG3501	Rhs element vgr protein
ATY44_18340	COG0631	protein serine/threonine phosphatase activity
ATY44_18345	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY44_18370	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY44_18405	COG0740	serine-type endopeptidase activity
ATY44_18410	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY44_18435	COG2963	transposase activity
ATY44_18465	COG0473	3-isopropylmalate dehydrogenase activity
ATY44_18495	COG4783	chaperone-mediated protein folding
ATY44_18510	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY44_18520	COG0438	transferase activity, transferring glycosyl groups
ATY44_18525	COG0671	phosphoesterase, PA-phosphatase related
ATY44_18540	COG2833	Protein of unknown function (DUF455)
ATY44_18560	COG0285	dihydrofolate synthase activity
ATY44_18565	COG0406	alpha-ribazole phosphatase activity
ATY44_18595	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY44_18600	COG4208	sulfate ABC transporter
ATY44_18605	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY44_18610	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY44_18615	COG0156	8-amino-7-oxononanoate synthase activity
ATY44_18645	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY44_18645	COG1902	pentaerythritol trinitrate reductase activity
ATY44_18660	COG3293	Transposase
ATY44_18695	COG0584	glycerophosphoryl diester phosphodiesterase
ATY44_18705	COG3293	Transposase
ATY44_18725	COG3039	Transposase
ATY44_18740	COG0625	glutathione transferase activity
ATY44_18750	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY44_18775	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY44_18795	COG2963	transposase activity
ATY44_18845	COG2963	transposase activity
ATY44_18870	COG3293	Transposase
ATY44_18895	COG3293	Transposase
ATY44_18920	COG3781	membrane
ATY44_18930	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY44_18970	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY44_19080	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY44_19085	COG1538	Outer membrane efflux protein
ATY44_19090	COG1519	Transferase
ATY44_19095	COG1560	Kdo2-lipid A biosynthetic process
ATY44_19135	COG0308	aminopeptidase N
ATY44_19140	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ATY44_19150	COG0330	HflC and HflK could
ATY44_19155	COG0330	HflC and HflK could
ATY44_19175	COG0678	peroxiredoxin activity
ATY44_19240	COG3829	transcription factor binding
ATY44_19265	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY44_19270	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY44_19285	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_19310	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY44_19350	COG1518	maintenance of DNA repeat elements
ATY44_19355	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY44_19390	COG2188	Transcriptional regulator
ATY44_19400	COG1450	Type ii and iii secretion system protein
ATY44_19415	COG3166	PFAM Fimbrial assembly family protein
ATY44_19420	COG3156	type II secretion system protein K
ATY44_19425	COG4795	General secretion pathway protein
ATY44_19430	COG2165	general secretion pathway protein
ATY44_19435	COG4970	Tfp pilus assembly protein FimT
ATY44_19440	COG2165	general secretion pathway protein
ATY44_19445	COG1459	type II secretion system
ATY44_19455	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY44_19465	COG5295	Hep Hag repeat protein
ATY44_19470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY44_19470	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY44_19475	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY44_19480	COG4974	Belongs to the 'phage' integrase family
ATY44_19495	COG0795	lipopolysaccharide-transporting ATPase activity
ATY44_19520	COG0525	valine-tRNA ligase activity
ATY44_19530	COG2963	transposase activity
ATY44_19535	COG2801	Transposase and inactivated derivatives
ATY44_19545	COG3039	Transposase
ATY44_19570	COG3039	Transposase
ATY44_19600	COG1183	phosphatidylcholine synthase activity
ATY44_19625	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY44_19630	COG1127	ABC transporter
ATY44_19635	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY44_19635	COG3218	ABC-type transport auxiliary lipoprotein component
ATY44_19670	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY44_19675	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY44_19675	COG0662	Cupin 2, conserved barrel domain protein
ATY44_19700	COG2086	electron transfer activity
ATY44_19725	COG3328	transposase activity
ATY44_19765	COG0626	cystathionine gamma-synthase activity
ATY44_19795	COG0625	glutathione transferase activity
ATY44_19805	COG0513	Belongs to the DEAD box helicase family
ATY44_19815	COG0720	synthase
ATY44_19830	COG1956	GAF domain-containing protein
ATY44_19865	COG0339	signal peptide processing
ATY44_19890	COG3039	Transposase
ATY44_19905	COG3293	Transposase
ATY44_19920	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY44_19925	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY44_19930	COG3842	ATPase activity
ATY44_20015	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY44_20035	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY44_20045	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY44_20075	COG2011	ABC-type metal ion transport system permease component
ATY44_20085	COG0697	spore germination
ATY44_20120	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY44_20125	COG1187	pseudouridine synthase activity
ATY44_20130	COG2813	Specifically methylates the guanine in position
ATY44_20150	COG2205	protein histidine kinase activity
ATY44_20150	COG2202	Pas domain
ATY44_20175	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY44_20180	COG1522	sequence-specific DNA binding
ATY44_20220	COG0745	RESPONSE REGULATOR receiver
ATY44_20235	COG1404	Belongs to the peptidase S8 family
ATY44_20255	COG0842	Transport permease protein
ATY44_20260	COG1131	(ABC) transporter
ATY44_20265	COG0025	NhaP-type Na H and K H
ATY44_20280	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY44_20285	COG1573	uracil-dna glycosylase
ATY44_20295	COG3384	dioxygenase
ATY44_20310	COG0667	Aldo Keto reductase
ATY44_20325	COG3590	peptidase
ATY44_20340	COG0531	amino acid
ATY44_20350	COG3279	Response regulator of the LytR AlgR family
ATY44_20355	COG3279	Response regulator of the LytR AlgR family
ATY44_20360	COG2972	Histidine kinase
ATY44_20400	COG2963	transposase activity
ATY44_20425	COG2204	response regulator
ATY44_20435	COG1271	oxidase subunit
ATY44_20440	COG1294	oxidase, subunit
ATY44_20450	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_20465	COG3039	Transposase
ATY44_20520	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY44_20530	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY44_20545	COG2963	transposase activity
ATY44_20550	COG2801	Transposase and inactivated derivatives
ATY44_20650	COG2963	transposase activity
ATY44_20655	COG2801	Transposase and inactivated derivatives
ATY44_20800	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY44_20810	COG1560	Kdo2-lipid A biosynthetic process
ATY44_20855	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY44_20855	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY44_20865	COG0242	peptide deformylase activity
ATY44_20870	COG1652	LysM domain
ATY44_20875	COG0758	DNA mediated transformation
ATY44_20895	COG1754	DNA topoisomerase type I activity
ATY44_20895	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY44_20915	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_20925	COG0616	signal peptide processing
ATY44_20930	COG0534	Mate efflux family protein
ATY44_20950	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY44_20970	COG1324	tolerance protein
ATY44_20990	COG0511	ligase activity, forming carbon-carbon bonds
ATY44_21000	COG0439	Biotin carboxylase
ATY44_21035	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY44_21070	COG3210	domain, Protein
ATY44_21075	COG2831	hemolysin activation secretion protein
ATY44_21095	COG2453	phosphatase
ATY44_21095	COG0671	phosphoesterase, PA-phosphatase related
ATY44_21100	COG2267	carboxylic ester hydrolase activity
ATY44_21110	COG2267	carboxylic ester hydrolase activity
ATY44_21130	COG0151	Belongs to the GarS family
ATY44_21135	COG0577	efflux transmembrane transporter activity
ATY44_21135	COG1136	(ABC) transporter
ATY44_21145	COG1289	transmembrane transporter activity
ATY44_21160	COG2814	Major facilitator Superfamily
ATY44_21180	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY44_21230	COG2963	transposase activity
ATY44_21270	COG0739	heme binding
ATY44_21285	COG2211	Major facilitator Superfamily
ATY44_21290	COG0708	Exodeoxyribonuclease III
ATY44_21305	COG1192	Involved in chromosome partitioning
ATY44_21310	COG1475	DNA binding
ATY44_21325	COG0463	Glycosyl transferase, family 2
ATY44_21350	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY44_21375	COG4221	oxidoreductase activity
ATY44_21380	COG2826	transposase and inactivated derivatives, IS30 family
ATY44_21390	COG1414	Transcriptional regulator
ATY44_21400	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY44_21405	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY44_21410	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY44_21415	COG3485	protocatechuate 3,4-dioxygenase
ATY44_21420	COG3485	protocatechuate 3,4-dioxygenase
ATY44_21440	COG2963	transposase activity
ATY44_21465	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY44_21470	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY44_21480	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY44_21480	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY44_21480	COG1042	CoA-binding domain protein
ATY44_21490	COG2239	Acts as a magnesium transporter
ATY44_21505	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY44_21510	COG3387	PFAM Glycoside hydrolase 15-related
ATY44_21525	COG3100	YcgL domain-containing protein
ATY44_21530	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY44_21540	COG0463	Glycosyl transferase, family 2
ATY44_21555	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_21575	COG1040	competence protein
ATY44_21590	COG0628	permease
ATY44_21600	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY44_21610	COG1595	DNA-templated transcription, initiation
ATY44_21615	COG0753	catalase activity
ATY44_21660	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY44_21665	COG0180	Tryptophanyl-tRNA synthetase
ATY44_21670	COG3237	CsbD-like
ATY44_21725	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY44_21725	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY44_21750	COG2205	protein histidine kinase activity
ATY44_21755	COG0745	RESPONSE REGULATOR receiver
ATY44_21765	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY44_21790	COG1566	PFAM secretion protein HlyD family protein
ATY44_21810	COG3039	Transposase
ATY44_21815	COG1199	ATP-dependent helicase activity
ATY44_21845	COG0583	DNA-binding transcription factor activity
ATY44_21880	COG0625	glutathione transferase activity
ATY44_21915	COG4555	ABC transporter
ATY44_21925	COG1476	TRANSCRIPTIONal
ATY44_21950	COG1131	(ABC) transporter
ATY44_21955	COG0842	Transport permease protein
ATY44_21965	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY44_22005	COG2963	transposase activity
ATY44_22015	COG3293	Transposase
ATY44_22045	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY44_22070	COG0564	pseudouridine synthase activity
ATY44_22095	COG0339	signal peptide processing
ATY44_22120	COG3254	rhamnose metabolic process
ATY44_22125	COG0738	Major facilitator superfamily
ATY44_22130	COG1414	Transcriptional regulator
ATY44_22140	COG3293	Transposase
ATY44_22150	COG2205	protein histidine kinase activity
ATY44_22165	COG3459	Glycosyltransferase 36 associated
ATY44_22170	COG2211	Major facilitator Superfamily
ATY44_22175	COG3265	gluconokinase activity
ATY44_22180	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY44_22200	COG2963	transposase activity
ATY44_22205	COG2801	Transposase and inactivated derivatives
ATY44_22230	COG3039	Transposase
ATY44_22285	COG1127	ABC transporter
ATY44_22290	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY44_22295	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY44_22310	COG2853	Lipoprotein
ATY44_22330	COG3293	Transposase
ATY44_22350	COG2963	transposase activity
ATY44_22385	COG3135	benzoate transporter
ATY44_22390	COG3135	benzoate transporter
ATY44_22410	COG0676	glucose-6-phosphate 1-epimerase activity
ATY44_22430	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY44_22435	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY44_22440	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY44_22445	COG1064	alcohol dehydrogenase
ATY44_22490	COG4773	Receptor
ATY44_22515	COG1522	sequence-specific DNA binding
ATY44_22520	COG3186	Phenylalanine-4-hydroxylase
ATY44_22530	COG2755	lipolytic protein G-D-S-L family
ATY44_22545	COG2963	transposase activity
ATY44_22560	COG0656	L-ascorbic acid biosynthetic process
ATY44_22565	COG2130	NADP-dependent
ATY44_22570	COG0667	Aldo Keto reductase
ATY44_22580	COG1187	pseudouridine synthase activity
ATY44_22595	COG1643	Atp-dependent helicase
ATY44_22600	COG4807	Protein conserved in bacteria
ATY44_22605	COG4948	Mandelate Racemase Muconate Lactonizing
ATY44_22610	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY44_22615	COG1028	Short-chain dehydrogenase reductase Sdr
ATY44_22635	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY44_22675	COG3162	membrane
ATY44_22680	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY44_22690	COG0708	Exodeoxyribonuclease III
ATY44_22705	COG2091	lysine biosynthetic process via aminoadipic acid
ATY44_22715	COG3540	Alkaline phosphatase
ATY44_22730	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY44_22735	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY44_22740	COG2159	amidohydrolase
ATY44_22750	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY44_22755	COG0583	DNA-binding transcription factor activity
ATY44_22760	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY44_22775	COG0210	DNA helicase
ATY44_22790	COG0531	amino acid
ATY44_22795	COG1322	Protein conserved in bacteria
ATY44_22805	COG0386	Belongs to the glutathione peroxidase family
ATY44_22820	COG3293	Transposase
ATY44_22855	COG0793	Belongs to the peptidase S41A family
ATY44_22860	COG4942	peptidase
ATY44_22870	COG2234	aminopeptidase activity
ATY44_22920	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY44_22925	COG0302	gtp cyclohydrolase
ATY44_22945	COG0477	Major facilitator Superfamily
ATY44_23030	COG1929	Belongs to the glycerate kinase type-1 family
ATY44_23035	COG2271	Major facilitator Superfamily
ATY44_23050	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY44_23055	COG0861	Integral membrane protein TerC family
ATY44_23065	COG0584	glycerophosphoryl diester phosphodiesterase
ATY44_23075	COG0671	phosphoesterase, PA-phosphatase related
ATY44_23085	COG0726	polysaccharide deacetylase
ATY44_23100	COG0230	Belongs to the bacterial ribosomal protein bL34 family