locus-tag	class	description
ATY45_00020	COG0187	DNA topoisomerase II activity
ATY45_00030	COG0501	Belongs to the peptidase M48B family
ATY45_00060	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ATY45_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY45_00090	COG4772	TonB-dependent receptor
ATY45_00100	COG3039	Transposase
ATY45_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY45_00125	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ATY45_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY45_00160	COG3039	Transposase
ATY45_00225	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_00250	COG3039	Transposase
ATY45_00260	COG1090	epimerase
ATY45_00265	COG0642	Histidine kinase
ATY45_00275	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY45_00370	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY45_00455	COG1511	domain protein
ATY45_00455	COG3264	Mechanosensitive ion channel
ATY45_00465	COG3293	Transposase
ATY45_00475	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY45_00480	COG2354	Protein conserved in bacteria
ATY45_00490	COG0745	RESPONSE REGULATOR receiver
ATY45_00490	COG3706	GGDEF domain
ATY45_00505	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY45_00530	COG0702	epimerase
ATY45_00535	COG1858	cytochrome C peroxidase
ATY45_00600	COG0513	Belongs to the DEAD box helicase family
ATY45_00610	COG3039	Transposase
ATY45_00655	COG1272	protein, Hemolysin III
ATY45_00660	COG1111	helicase
ATY45_00660	COG1205	dead DEAH box helicase
ATY45_00715	COG0070	glutamate synthase
ATY45_00715	COG0069	glutamate synthase activity
ATY45_00715	COG0067	glutamate synthase
ATY45_00720	COG0493	'glutamate synthase
ATY45_00740	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_00765	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY45_00770	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY45_00775	COG1609	Transcriptional regulator
ATY45_00800	COG0366	Alpha amylase catalytic
ATY45_00805	COG0366	Alpha amylase catalytic
ATY45_00810	COG2801	Transposase and inactivated derivatives
ATY45_00825	COG3328	transposase activity
ATY45_00860	COG0606	chelatase, subunit chli
ATY45_00900	COG1166	arginine decarboxylase activity
ATY45_00915	COG3501	Rhs element vgr protein
ATY45_00970	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_00995	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY45_01010	COG0210	DNA helicase
ATY45_01030	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY45_01065	COG2937	Belongs to the GPAT DAPAT family
ATY45_01085	COG2963	transposase activity
ATY45_01090	COG3328	transposase activity
ATY45_01125	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY45_01135	COG1119	ATPase activity
ATY45_01150	COG0517	IMP dehydrogenase activity
ATY45_01150	COG1125	glycine betaine transport
ATY45_01165	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY45_01170	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY45_01175	COG3550	peptidyl-serine autophosphorylation
ATY45_01180	COG1396	sequence-specific DNA binding
ATY45_01200	COG0489	protein tyrosine kinase activity
ATY45_01205	COG2062	phosphohistidine phosphatase, SixA
ATY45_01215	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY45_01265	COG0174	glutamine synthetase
ATY45_01270	COG0347	Belongs to the P(II) protein family
ATY45_01275	COG0004	ammonium transporteR
ATY45_01280	COG3852	Histidine kinase
ATY45_01285	COG2204	response regulator
ATY45_01290	COG2032	superoxide dismutase activity
ATY45_01295	COG2032	superoxide dismutase activity
ATY45_01355	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY45_01360	COG1074	ATP-dependent DNA helicase activity
ATY45_01370	COG3549	Plasmid maintenance system killer
ATY45_01445	COG1764	response to oxidative stress
ATY45_01450	COG1846	Transcriptional regulator
ATY45_01510	COG3293	Transposase
ATY45_01545	COG2211	Major facilitator Superfamily
ATY45_01565	COG3693	PFAM glycoside hydrolase, family 10
ATY45_01570	COG3693	PFAM glycoside hydrolase, family 10
ATY45_01595	COG0246	Mannitol dehydrogenase
ATY45_01600	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY45_01610	COG4948	Mandelate Racemase Muconate Lactonizing
ATY45_01620	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY45_01640	COG2974	May be involved in recombination
ATY45_01660	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY45_01670	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY45_01680	COG0805	protein transport
ATY45_01690	COG0519	Catalyzes the synthesis of GMP from XMP
ATY45_01690	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY45_01705	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY45_01710	COG0752	glycyl-tRNA synthetase alpha subunit
ATY45_01720	COG0457	Tetratricopeptide repeat
ATY45_01725	COG4771	TonB-dependent receptor
ATY45_01740	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY45_01750	COG0697	spore germination
ATY45_01760	COG0523	cobalamin synthesis protein
ATY45_01820	COG1960	acyl-CoA dehydrogenase activity
ATY45_01825	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY45_01840	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_01875	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY45_01915	COG0084	hydrolase, TatD family'
ATY45_01925	COG0583	DNA-binding transcription factor activity
ATY45_01930	COG2814	Major facilitator Superfamily
ATY45_01940	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY45_01945	COG1902	pentaerythritol trinitrate reductase activity
ATY45_01965	COG0745	RESPONSE REGULATOR receiver
ATY45_01970	COG2205	protein histidine kinase activity
ATY45_01975	COG2205	protein histidine kinase activity
ATY45_01985	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY45_01990	COG0583	DNA-binding transcription factor activity
ATY45_02020	COG0702	epimerase
ATY45_02025	COG1733	regulation of RNA biosynthetic process
ATY45_02090	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY45_02120	COG2911	Protein conserved in bacteria
ATY45_02125	COG0729	surface antigen
ATY45_02135	COG2963	transposase activity
ATY45_02145	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY45_02150	COG3118	belongs to the thioredoxin family
ATY45_02160	COG2884	Cell division ATP-binding protein ftsE
ATY45_02165	COG2177	Part of the ABC transporter FtsEX involved in
ATY45_02170	COG2201	protein-glutamate methylesterase activity
ATY45_02180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY45_02190	COG1252	NADH dehydrogenase
ATY45_02220	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY45_02235	COG4771	TonB-dependent receptor
ATY45_02245	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY45_02285	COG3386	PFAM SMP-30 Gluconolaconase
ATY45_02300	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY45_02335	COG2353	YceI-like domain
ATY45_02420	COG3328	transposase activity
ATY45_02455	COG3039	Transposase
ATY45_02485	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY45_02510	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY45_02515	COG0318	PFAM AMP-dependent synthetase and ligase
ATY45_02525	COG0596	Alpha beta hydrolase
ATY45_02540	COG3177	Filamentation induced by cAMP protein fic
ATY45_02545	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY45_02560	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY45_02585	COG4191	Histidine kinase
ATY45_02590	COG0028	Belongs to the TPP enzyme family
ATY45_02610	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY45_02635	COG5383	Protein conserved in bacteria
ATY45_02645	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY45_02650	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY45_02655	COG1473	amidohydrolase
ATY45_02670	COG3328	transposase activity
ATY45_02775	COG0358	DNA primase activity
ATY45_02780	COG1295	ribonuclease BN
ATY45_02785	COG3293	Transposase
ATY45_02795	COG1610	YqeY-like protein
ATY45_02800	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY45_02810	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY45_02820	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_02840	COG3293	Transposase
ATY45_02870	COG2133	pyrroloquinoline quinone binding
ATY45_02880	COG4682	membrane
ATY45_02895	COG3293	Transposase
ATY45_02905	COG0531	amino acid
ATY45_02930	COG4948	Mandelate Racemase Muconate Lactonizing
ATY45_02940	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY45_02945	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY45_03020	COG0183	Belongs to the thiolase family
ATY45_03060	COG3104	oligopeptide transport
ATY45_03085	COG1320	monovalent cation:proton antiporter activity
ATY45_03090	COG2212	antiporter activity
ATY45_03100	COG0651	ATP synthesis coupled electron transport
ATY45_03105	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY45_03110	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY45_03110	COG2111	Na H antiporter
ATY45_03165	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY45_03175	COG0456	acetyltransferase
ATY45_03195	COG2963	transposase activity
ATY45_03210	COG4221	oxidoreductase activity
ATY45_03270	COG0697	spore germination
ATY45_03275	COG4305	rare lipoprotein A
ATY45_03280	COG5297	Belongs to the glycosyl hydrolase family 6
ATY45_03285	COG1113	amino acid transport
ATY45_03295	COG0598	Magnesium transport protein CorA
ATY45_03335	COG3293	Transposase
ATY45_03365	COG0840	transmembrane signaling receptor activity
ATY45_03375	COG5297	Belongs to the glycosyl hydrolase family 6
ATY45_03375	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY45_03380	COG0659	secondary active sulfate transmembrane transporter activity
ATY45_03390	COG3706	GGDEF domain
ATY45_03410	COG3293	Transposase
ATY45_03425	COG3275	phosphorelay sensor kinase activity
ATY45_03460	COG1505	serine-type exopeptidase activity
ATY45_03500	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY45_03525	COG0308	aminopeptidase N
ATY45_03530	COG2199	diguanylate cyclase activity
ATY45_03585	COG3039	Transposase
ATY45_03595	COG1077	Cell shape determining protein MreB Mrl
ATY45_03600	COG1792	Involved in formation and maintenance of cell shape
ATY45_03615	COG0772	Belongs to the SEDS family
ATY45_03640	COG3501	Rhs element vgr protein
ATY45_03660	COG3039	Transposase
ATY45_03675	COG2951	lytic endotransglycosylase activity
ATY45_03680	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY45_03690	COG1686	Belongs to the peptidase S11 family
ATY45_03725	COG1056	cytidyltransferase-related domain
ATY45_03725	COG1051	belongs to the nudix hydrolase family
ATY45_03765	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY45_03770	COG0673	inositol 2-dehydrogenase activity
ATY45_03775	COG2823	Periplasmic or secreted lipoprotein
ATY45_03780	COG4251	negative regulation of phosphorylation
ATY45_03785	COG0784	Response regulator, receiver
ATY45_03790	COG4191	Histidine kinase
ATY45_03795	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY45_03815	COG2801	Transposase and inactivated derivatives
ATY45_03835	COG3250	beta-galactosidase activity
ATY45_03860	COG1609	Transcriptional regulator
ATY45_03865	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY45_03870	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY45_03880	COG1215	transferase activity, transferring glycosyl groups
ATY45_03885	COG1649	PFAM Uncharacterised BCR, COG1649
ATY45_03885	COG0726	polysaccharide deacetylase
ATY45_03910	COG3293	Transposase
ATY45_03960	COG3039	Transposase
ATY45_03965	COG3039	Transposase
ATY45_03970	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY45_03975	COG3039	Transposase
ATY45_03980	COG2963	transposase activity
ATY45_03990	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY45_04060	COG2205	protein histidine kinase activity
ATY45_04065	COG0745	RESPONSE REGULATOR receiver
ATY45_04115	COG0488	(ABC) transporter
ATY45_04155	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY45_04155	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY45_04185	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY45_04220	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY45_04225	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY45_04235	COG2205	protein histidine kinase activity
ATY45_04240	COG0745	RESPONSE REGULATOR receiver
ATY45_04245	COG0277	FAD linked oxidase domain protein
ATY45_04250	COG1988	membrane-bound metal-dependent
ATY45_04290	COG3116	cell division
ATY45_04305	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY45_04330	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY45_04335	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY45_04360	COG4942	peptidase
ATY45_04360	COG1388	LysM domain
ATY45_04375	COG0494	nUDIX hydrolase
ATY45_04385	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY45_04395	COG3321	synthase
ATY45_04395	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_04395	COG0604	alcohol dehydrogenase
ATY45_04435	COG3039	Transposase
ATY45_04455	COG2226	methyltransferase
ATY45_04500	COG3293	Transposase
ATY45_04510	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY45_04520	COG4106	trans-aconitate 2-methyltransferase activity
ATY45_04525	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY45_04535	COG3039	Transposase
ATY45_04540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY45_04545	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY45_04555	COG0667	Aldo Keto reductase
ATY45_04580	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY45_04590	COG2175	clavaminate synthase activity
ATY45_04600	COG4181	ATPase activity
ATY45_04615	COG0642	Histidine kinase
ATY45_04625	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY45_04680	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY45_04695	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY45_04700	COG2096	Adenosyltransferase
ATY45_04710	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY45_04715	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY45_04755	COG0583	DNA-binding transcription factor activity
ATY45_04760	COG0318	PFAM AMP-dependent synthetase and ligase
ATY45_04770	COG1024	Enoyl-CoA hydratase
ATY45_04790	COG3386	PFAM SMP-30 Gluconolaconase
ATY45_04835	COG3293	Transposase
ATY45_04845	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_04870	COG0745	RESPONSE REGULATOR receiver
ATY45_04870	COG3706	GGDEF domain
ATY45_04880	COG2197	response regulator
ATY45_04910	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY45_04915	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY45_04920	COG0583	DNA-binding transcription factor activity
ATY45_04925	COG3634	alkyl hydroperoxide reductase activity
ATY45_04935	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY45_04975	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY45_04975	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY45_04990	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY45_05010	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY45_05015	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY45_05040	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY45_05050	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY45_05080	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY45_05100	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY45_05140	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY45_05155	COG0012	GTP binding
ATY45_05185	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY45_05190	COG0250	Participates in transcription elongation, termination and antitermination
ATY45_05205	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ATY45_05210	COG0222	ribosome binding
ATY45_05225	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY45_05260	COG0089	rRNA binding
ATY45_05285	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY45_05290	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY45_05295	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY45_05305	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ATY45_05315	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY45_05330	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ATY45_05335	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY45_05340	COG1841	ribosomal large subunit assembly
ATY45_05350	COG0201	protein transport
ATY45_05355	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY45_05370	COG0202	RNA polymerase activity
ATY45_05375	COG0203	ribosomal protein L17
ATY45_05400	COG2963	transposase activity
ATY45_05445	COG3551	Protein conserved in bacteria
ATY45_05475	COG2194	sulfuric ester hydrolase activity
ATY45_05485	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY45_05490	COG0745	RESPONSE REGULATOR receiver
ATY45_05495	COG0642	Histidine kinase
ATY45_05505	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY45_05510	COG2894	cell division
ATY45_05535	COG4585	Histidine kinase
ATY45_05540	COG2197	response regulator
ATY45_05555	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY45_05585	COG2963	transposase activity
ATY45_05635	COG3501	Rhs element vgr protein
ATY45_05645	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY45_05655	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY45_05660	COG3501	Rhs element vgr protein
ATY45_05710	COG3501	Rhs element vgr protein
ATY45_05715	COG2801	Transposase and inactivated derivatives
ATY45_05720	COG2963	transposase activity
ATY45_05735	COG3501	Rhs element vgr protein
ATY45_05760	COG3501	Rhs element vgr protein
ATY45_05825	COG3501	Rhs element vgr protein
ATY45_05920	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY45_05940	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY45_05945	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY45_05950	COG0732	type I restriction modification DNA specificity domain
ATY45_05955	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY45_05995	COG0406	alpha-ribazole phosphatase activity
ATY45_05995	COG0328	RNA-DNA hybrid ribonuclease activity
ATY45_06040	COG0587	DNA-directed DNA polymerase activity
ATY45_06055	COG1297	OPT oligopeptide transporter protein
ATY45_06070	COG0823	Involved in the tonB-independent uptake of proteins
ATY45_06070	COG1506	peptidase
ATY45_06095	COG2207	Transcriptional regulator
ATY45_06095	COG1917	Cupin 2, conserved barrel domain protein
ATY45_06115	COG0753	catalase activity
ATY45_06135	COG3039	Transposase
ATY45_06155	COG0126	phosphoglycerate kinase activity
ATY45_06165	COG0469	pyruvate kinase activity
ATY45_06170	COG3588	fructose-bisphosphate aldolase
ATY45_06175	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY45_06210	COG0784	Response regulator, receiver
ATY45_06210	COG2205	protein histidine kinase activity
ATY45_06210	COG2198	Histidine kinase
ATY45_06240	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY45_06250	COG0529	Catalyzes the synthesis of activated sulfate
ATY45_06250	COG2895	sulfate adenylyltransferase (ATP) activity
ATY45_06260	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY45_06265	COG0308	aminopeptidase N
ATY45_06295	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY45_06320	COG1970	mechanosensitive ion channel activity
ATY45_06330	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_06365	COG0471	metal ion transport
ATY45_06365	COG3273	potassium ion transport
ATY45_06410	COG2963	transposase activity
ATY45_06445	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_06450	COG3293	Transposase
ATY45_06475	COG3039	Transposase
ATY45_06490	COG3293	Transposase
ATY45_06500	COG3039	Transposase
ATY45_06545	COG3293	Transposase
ATY45_06560	COG3118	belongs to the thioredoxin family
ATY45_06585	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY45_06635	COG3039	Transposase
ATY45_06645	COG2968	Membrane
ATY45_06655	COG1530	ribonuclease E activity
ATY45_06660	COG3164	Protein of unknown function
ATY45_06680	COG0312	modulator of DNA gyrase
ATY45_06690	COG0312	modulator of DNA gyrase
ATY45_06710	COG0142	geranyltranstransferase activity
ATY45_06720	COG0037	tRNA processing
ATY45_06725	COG1785	Belongs to the alkaline phosphatase family
ATY45_06730	COG1301	dicarboxylic acid transport
ATY45_06745	COG0791	NLP P60 protein
ATY45_06750	COG0791	NLP P60 protein
ATY45_06755	COG1047	Peptidyl-prolyl cis-trans
ATY45_06760	COG2311	Membrane
ATY45_06765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY45_06800	COG0489	protein tyrosine kinase activity
ATY45_06820	COG0412	Dienelactone hydrolase
ATY45_06830	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY45_06850	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_06855	COG0433	COG0433 Predicted ATPase
ATY45_06875	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY45_06885	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY45_06890	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY45_06920	COG0133	tryptophan synthase activity
ATY45_06975	COG3293	Transposase
ATY45_06990	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_07010	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY45_07030	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY45_07035	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY45_07040	COG1034	ATP synthesis coupled electron transport
ATY45_07045	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY45_07060	COG0713	ATP synthesis coupled electron transport
ATY45_07075	COG1007	ATP synthesis coupled electron transport
ATY45_07090	COG0195	Participates in both transcription termination and antitermination
ATY45_07095	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
ATY45_07110	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY45_07145	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY45_07150	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY45_07160	COG2095	MarC family integral membrane protein
ATY45_07170	COG1611	Belongs to the LOG family
ATY45_07210	COG4969	Belongs to the N-Me-Phe pilin family
ATY45_07215	COG0556	nucleotide-excision repair
ATY45_07235	COG2963	transposase activity
ATY45_07250	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY45_07255	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY45_07260	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY45_07265	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ATY45_07275	COG0776	regulation of translation
ATY45_07320	COG0438	transferase activity, transferring glycosyl groups
ATY45_07325	COG0438	transferase activity, transferring glycosyl groups
ATY45_07450	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY45_07470	COG4191	Histidine kinase
ATY45_07470	COG0784	Response regulator, receiver
ATY45_07490	COG0552	protein localization to endoplasmic reticulum
ATY45_07500	COG3938	Belongs to the proline racemase family
ATY45_07505	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY45_07520	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY45_07530	COG0006	proline dipeptidase activity
ATY45_07545	COG0531	amino acid
ATY45_07595	COG4206	TonB-dependent receptor
ATY45_07620	COG4206	TonB-dependent receptor
ATY45_07625	COG3328	transposase activity
ATY45_07675	COG0746	molybdenum cofactor guanylyltransferase activity
ATY45_07700	COG1648	precorrin-2 dehydrogenase activity
ATY45_07700	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY45_07770	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY45_07800	COG3293	Transposase
ATY45_07815	COG1530	ribonuclease E activity
ATY45_07825	COG3064	Membrane
ATY45_07830	COG0428	transporter
ATY45_07835	COG0428	transporter
ATY45_07860	COG2801	Transposase and inactivated derivatives
ATY45_07900	COG3039	Transposase
ATY45_07970	COG3501	Rhs element vgr protein
ATY45_08005	COG0631	protein serine/threonine phosphatase activity
ATY45_08010	COG0515	serine threonine protein kinase
ATY45_08035	COG1858	cytochrome C peroxidase
ATY45_08045	COG4644	lycopene metabolic process
ATY45_08060	COG2963	transposase activity
ATY45_08090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY45_08095	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY45_08110	COG2201	protein-glutamate methylesterase activity
ATY45_08140	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY45_08160	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY45_08175	COG1595	DNA-templated transcription, initiation
ATY45_08225	COG2244	polysaccharide biosynthetic process
ATY45_08255	COG2264	protein methyltransferase activity
ATY45_08265	COG0438	transferase activity, transferring glycosyl groups
ATY45_08280	COG1136	(ABC) transporter
ATY45_08285	COG1132	(ABC) transporter
ATY45_08290	COG0477	Major facilitator Superfamily
ATY45_08295	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY45_08310	COG1253	flavin adenine dinucleotide binding
ATY45_08320	COG0306	phosphate transporter
ATY45_08385	COG2840	Smr protein MutS2
ATY45_08400	COG1238	metal cluster binding
ATY45_08415	COG1534	Rna-binding protein
ATY45_08425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY45_08430	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY45_08435	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY45_08440	COG1923	regulation of RNA biosynthetic process
ATY45_08445	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY45_08450	COG1546	Belongs to the CinA family
ATY45_08470	COG2137	regulation of response to DNA damage stimulus
ATY45_08480	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY45_08500	COG0305	Participates in initiation and elongation during chromosome replication
ATY45_08505	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY45_08535	COG1741	Belongs to the pirin family
ATY45_08540	COG0583	DNA-binding transcription factor activity
ATY45_08570	COG0351	phosphomethylpyrimidine kinase
ATY45_08580	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY45_08585	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY45_08600	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY45_08610	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY45_08615	COG3734	2-keto-3-deoxy-galactonokinase
ATY45_08630	COG0800	Aldolase
ATY45_08645	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY45_08660	COG1070	Carbohydrate kinase
ATY45_08670	COG0477	Major facilitator Superfamily
ATY45_08740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY45_08745	COG2258	MOSC domain
ATY45_08750	COG3293	Transposase
ATY45_08760	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY45_08765	COG0505	Belongs to the CarA family
ATY45_08775	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY45_08780	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY45_08790	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY45_08830	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY45_08850	COG0784	Response regulator, receiver
ATY45_08850	COG2205	protein histidine kinase activity
ATY45_08850	COG2198	Histidine kinase
ATY45_08855	COG1024	Enoyl-CoA hydratase
ATY45_08860	COG0318	PFAM AMP-dependent synthetase and ligase
ATY45_08890	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY45_08960	COG0835	chemotaxis
ATY45_08970	COG0840	transmembrane signaling receptor activity
ATY45_08975	COG0840	transmembrane signaling receptor activity
ATY45_08980	COG0840	transmembrane signaling receptor activity
ATY45_08985	COG0840	transmembrane signaling receptor activity
ATY45_08990	COG0840	transmembrane signaling receptor activity
ATY45_09000	COG0840	transmembrane signaling receptor activity
ATY45_09020	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_09035	COG0745	RESPONSE REGULATOR receiver
ATY45_09045	COG0835	chemotaxis
ATY45_09050	COG1192	Involved in chromosome partitioning
ATY45_09055	COG1360	Flagellar Motor Protein
ATY45_09060	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY45_09080	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY45_09090	COG4771	TonB-dependent receptor
ATY45_09135	COG3039	Transposase
ATY45_09150	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY45_09150	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY45_09155	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY45_09160	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY45_09160	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY45_09165	COG1609	Transcriptional regulator
ATY45_09185	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY45_09190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY45_09200	COG2902	Dehydrogenase
ATY45_09205	COG3039	Transposase
ATY45_09215	COG5002	protein histidine kinase activity
ATY45_09215	COG2205	protein histidine kinase activity
ATY45_09215	COG0784	Response regulator, receiver
ATY45_09220	COG2733	membrane
ATY45_09270	COG0243	molybdopterin cofactor binding
ATY45_09280	COG0477	Major facilitator Superfamily
ATY45_09285	COG3706	GGDEF domain
ATY45_09285	COG0745	RESPONSE REGULATOR receiver
ATY45_09290	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY45_09295	COG0174	glutamine synthetase
ATY45_09340	COG1177	transmembrane transport
ATY45_09350	COG1012	belongs to the aldehyde dehydrogenase family
ATY45_09365	COG4535	Mg2 and Co2 transporter CorC
ATY45_09385	COG1702	phosphate starvation-inducible protein PhoH
ATY45_09410	COG0741	lytic transglycosylase activity
ATY45_09415	COG0723	plastoquinol--plastocyanin reductase activity
ATY45_09420	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY45_09425	COG2857	Cytochrome c1
ATY45_09430	COG0625	glutathione transferase activity
ATY45_09435	COG2969	positive regulation of protein catabolic process
ATY45_09470	COG3328	transposase activity
ATY45_09480	COG3039	Transposase
ATY45_09535	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY45_09555	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY45_09560	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY45_09560	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY45_09565	COG0802	atpase or kinase
ATY45_09570	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY45_09595	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_09615	COG2081	HI0933 family
ATY45_09620	COG4681	YaeQ
ATY45_09635	COG0625	glutathione transferase activity
ATY45_09645	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ATY45_09655	COG0513	Belongs to the DEAD box helicase family
ATY45_09685	COG0483	inositol monophosphate 1-phosphatase activity
ATY45_09700	COG5001	Diguanylate cyclase
ATY45_09700	COG3300	MHYT domain
ATY45_09705	COG1509	lysine 2,3-aminomutase activity
ATY45_09720	COG0402	S-adenosylhomocysteine deaminase activity
ATY45_09770	COG3039	Transposase
ATY45_09780	COG0583	DNA-binding transcription factor activity
ATY45_09850	COG0742	ribosomal rna small subunit methyltransferase
ATY45_09870	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY45_09875	COG0405	Gamma-glutamyltransferase
ATY45_09890	COG3293	Transposase
ATY45_09945	COG3501	Rhs element vgr protein
ATY45_10000	COG3039	Transposase
ATY45_10050	COG1862	Preprotein translocase
ATY45_10060	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY45_10115	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY45_10125	COG0704	Plays a role in the regulation of phosphate uptake
ATY45_10140	COG0573	inorganic phosphate transmembrane transporter activity
ATY45_10145	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY45_10165	COG3293	Transposase
ATY45_10185	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY45_10195	COG1024	Enoyl-CoA hydratase
ATY45_10205	COG0494	nUDIX hydrolase
ATY45_10270	COG0667	Aldo Keto reductase
ATY45_10280	COG2925	Exonuclease
ATY45_10290	COG3844	kynureninase activity
ATY45_10305	COG0288	reversible hydration of carbon dioxide
ATY45_10340	COG0316	Belongs to the HesB IscA family
ATY45_10365	COG3115	cell septum assembly
ATY45_10380	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY45_10400	COG2963	transposase activity
ATY45_10420	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY45_10430	COG2986	histidine ammonia-lyase
ATY45_10480	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY45_10490	COG0077	Prephenate dehydratase
ATY45_10490	COG1605	Chorismate mutase
ATY45_10505	COG2963	transposase activity
ATY45_10510	COG3039	Transposase
ATY45_10525	COG4566	intracellular signal transduction
ATY45_10565	COG2963	transposase activity
ATY45_10580	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY45_10595	COG0617	tRNA 3'-terminal CCA addition
ATY45_10610	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ATY45_10640	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY45_10650	COG5001	Diguanylate cyclase
ATY45_10650	COG2203	Gaf domain
ATY45_10650	COG3706	GGDEF domain
ATY45_10650	COG4251	negative regulation of phosphorylation
ATY45_10735	COG0386	Belongs to the glutathione peroxidase family
ATY45_10800	COG3706	GGDEF domain
ATY45_10820	COG3293	Transposase
ATY45_10830	COG1247	-acetyltransferase
ATY45_10880	COG3293	Transposase
ATY45_10890	COG1247	-acetyltransferase
ATY45_10915	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY45_10940	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY45_10955	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY45_10965	COG0431	NADPH-dependent FMN reductase
ATY45_10970	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ATY45_10975	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY45_10995	COG0784	Response regulator, receiver
ATY45_10995	COG5002	protein histidine kinase activity
ATY45_10995	COG2205	protein histidine kinase activity
ATY45_11020	COG3293	Transposase
ATY45_11035	COG0800	Aldolase
ATY45_11040	COG0129	dihydroxy-acid dehydratase activity
ATY45_11045	COG0363	glucosamine-6-phosphate deaminase activity
ATY45_11055	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY45_11065	COG0354	folic acid binding
ATY45_11075	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY45_11090	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY45_11105	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY45_11130	COG0811	peptide transport
ATY45_11155	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY45_11225	COG2201	protein-glutamate methylesterase activity
ATY45_11245	COG3293	Transposase
ATY45_11310	COG3293	Transposase
ATY45_11365	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY45_11365	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY45_11420	COG0124	histidyl-tRNA synthetase
ATY45_11435	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY45_11470	COG1012	belongs to the aldehyde dehydrogenase family
ATY45_11495	COG0697	spore germination
ATY45_11500	COG1794	racemase activity, acting on amino acids and derivatives
ATY45_11515	COG0671	phosphoesterase, PA-phosphatase related
ATY45_11530	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY45_11540	COG2183	response to ionizing radiation
ATY45_11550	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY45_11550	COG0723	plastoquinol--plastocyanin reductase activity
ATY45_11565	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY45_11575	COG1183	phosphatidylcholine synthase activity
ATY45_11580	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_11605	COG0668	transmembrane transport
ATY45_11615	COG0590	tRNA wobble adenosine to inosine editing
ATY45_11620	COG1321	iron dependent repressor
ATY45_11625	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY45_11640	COG0583	DNA-binding transcription factor activity
ATY45_11645	COG0583	DNA-binding transcription factor activity
ATY45_11665	COG0583	DNA-binding transcription factor activity
ATY45_11670	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY45_11725	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY45_11725	COG0475	glutathione-regulated potassium exporter activity
ATY45_11730	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY45_11740	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY45_11745	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY45_11760	COG0539	negative regulation of cytoplasmic translation
ATY45_11770	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY45_11780	COG2957	Belongs to the agmatine deiminase family
ATY45_11785	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY45_11810	COG0395	ABC-type sugar transport system, permease component
ATY45_11815	COG1175	transmembrane transport
ATY45_11845	COG2350	Protein conserved in bacteria
ATY45_11850	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY45_11855	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY45_11860	COG1187	pseudouridine synthase activity
ATY45_11885	COG0436	Aminotransferase
ATY45_11950	COG0277	FAD linked oxidase domain protein
ATY45_11955	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY45_11965	COG0531	amino acid
ATY45_11970	COG0531	amino acid
ATY45_12010	COG3039	Transposase
ATY45_12020	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY45_12055	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_12100	COG0303	'Molybdopterin
ATY45_12110	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY45_12120	COG1426	Protein conserved in bacteria
ATY45_12135	COG0105	UTP biosynthetic process
ATY45_12145	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY45_12145	COG1024	Enoyl-CoA hydratase
ATY45_12150	COG0183	Belongs to the thiolase family
ATY45_12165	COG0038	chloride channel
ATY45_12185	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY45_12205	COG1674	ftsk spoiiie
ATY45_12210	COG0492	ferredoxin-NADP+ reductase activity
ATY45_12235	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY45_12240	COG0542	response to heat
ATY45_12245	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY45_12280	COG5001	Diguanylate cyclase
ATY45_12285	COG4585	Histidine kinase
ATY45_12295	COG5002	protein histidine kinase activity
ATY45_12315	COG0835	chemotaxis
ATY45_12315	COG0784	Response regulator, receiver
ATY45_12325	COG1558	bacterial-type flagellum-dependent cell motility
ATY45_12330	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY45_12335	COG1749	Flagellar hook protein flgE
ATY45_12340	COG4787	bacterial-type flagellum-dependent cell motility
ATY45_12345	COG4786	Flagellar basal body rod
ATY45_12375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY45_12380	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY45_12410	COG2201	protein-glutamate methylesterase activity
ATY45_12415	COG2204	response regulator
ATY45_12430	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY45_12440	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_12470	COG1677	Flagellar hook-basal body complex protein FliE
ATY45_12520	COG3190	flagellar
ATY45_12535	COG1987	bacterial-type flagellum assembly
ATY45_12540	COG1684	flagellar biosynthetic protein fliR
ATY45_12545	COG5001	Diguanylate cyclase
ATY45_12545	COG3300	MHYT domain
ATY45_12550	COG5001	Diguanylate cyclase
ATY45_12550	COG3300	MHYT domain
ATY45_12575	COG0455	bacterial-type flagellum organization
ATY45_12595	COG0643	Histidine kinase
ATY45_12595	COG2198	Histidine kinase
ATY45_12610	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_12740	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY45_12745	COG4988	ABC transporter
ATY45_12755	COG1271	oxidase subunit
ATY45_12760	COG1294	oxidase, subunit
ATY45_12820	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY45_12825	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY45_12835	COG0137	argininosuccinate synthase activity
ATY45_12840	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY45_12855	COG2166	iron-sulfur cluster assembly
ATY45_12870	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY45_12885	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY45_12895	COG4302	ethanolamine ammonia-lyase activity
ATY45_12915	COG3039	Transposase
ATY45_12935	COG4677	pectinesterase activity
ATY45_12975	COG2963	transposase activity
ATY45_12980	COG2801	Transposase and inactivated derivatives
ATY45_13025	COG1278	Cold shock
ATY45_13070	COG3039	Transposase
ATY45_13080	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY45_13090	COG0557	exoribonuclease II activity
ATY45_13110	COG1960	acyl-CoA dehydrogenase activity
ATY45_13120	COG0646	methionine synthase
ATY45_13120	COG1410	methionine synthase
ATY45_13125	COG1410	methionine synthase
ATY45_13125	COG0646	methionine synthase
ATY45_13135	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY45_13175	COG0386	Belongs to the glutathione peroxidase family
ATY45_13180	COG1725	Transcriptional regulator
ATY45_13185	COG1131	(ABC) transporter
ATY45_13225	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_13235	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_13245	COG3293	Transposase
ATY45_13280	COG2850	peptidyl-arginine hydroxylation
ATY45_13315	COG1132	(ABC) transporter
ATY45_13320	COG0583	DNA-binding transcription factor activity
ATY45_13335	COG1605	Chorismate mutase
ATY45_13335	COG0287	Prephenate dehydrogenase
ATY45_13340	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY45_13365	COG0497	DNA recombination
ATY45_13375	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY45_13380	COG2914	Belongs to the UPF0125 (RnfH) family
ATY45_13390	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ATY45_13410	COG1960	acyl-CoA dehydrogenase activity
ATY45_13440	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_13460	COG3293	Transposase
ATY45_13475	COG2814	Major facilitator Superfamily
ATY45_13480	COG1566	PFAM secretion protein HlyD family protein
ATY45_13495	COG2207	Transcriptional regulator
ATY45_13520	COG4774	siderophore transport
ATY45_13535	COG0367	asparagine synthase
ATY45_13550	COG1393	Belongs to the ArsC family
ATY45_13570	COG0024	Methionine aminopeptidase
ATY45_13635	COG0575	Belongs to the CDS family
ATY45_13645	COG0750	zinc metalloprotease
ATY45_13695	COG4771	TonB-dependent receptor
ATY45_13700	COG1131	(ABC) transporter
ATY45_13795	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY45_13805	COG2040	homocysteine
ATY45_13810	COG0833	amino acid
ATY45_13840	COG2878	Part of a membrane complex involved in electron transport
ATY45_13860	COG1595	DNA-templated transcription, initiation
ATY45_13885	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY45_13900	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY45_13905	COG0251	oxidation-reduction process
ATY45_13915	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY45_13915	COG0392	lysyltransferase activity
ATY45_13945	COG2814	Major facilitator Superfamily
ATY45_13950	COG1902	pentaerythritol trinitrate reductase activity
ATY45_13960	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY45_13975	COG1047	Peptidyl-prolyl cis-trans
ATY45_14010	COG3039	Transposase
ATY45_14015	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY45_14025	COG1451	nucleotide metabolic process
ATY45_14040	COG0183	Belongs to the thiolase family
ATY45_14055	COG0745	RESPONSE REGULATOR receiver
ATY45_14055	COG3706	GGDEF domain
ATY45_14070	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY45_14070	COG1793	dna ligase
ATY45_14080	COG1793	dna ligase
ATY45_14085	COG1201	RNA secondary structure unwinding
ATY45_14100	COG1278	Cold shock
ATY45_14105	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY45_14120	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY45_14125	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY45_14130	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY45_14190	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY45_14205	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY45_14205	COG1024	Enoyl-CoA hydratase
ATY45_14225	COG1024	Enoyl-CoA hydratase
ATY45_14230	COG1960	acyl-CoA dehydrogenase activity
ATY45_14255	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY45_14305	COG2353	YceI-like domain
ATY45_14315	COG2353	YceI-like domain
ATY45_14325	COG1760	l-serine dehydratase
ATY45_14335	COG0626	cystathionine gamma-synthase activity
ATY45_14340	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY45_14345	COG0739	heme binding
ATY45_14355	COG1272	protein, Hemolysin III
ATY45_14365	COG0516	GMP reductase activity
ATY45_14365	COG0517	IMP dehydrogenase activity
ATY45_14370	COG0463	Glycosyl transferase, family 2
ATY45_14380	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY45_14390	COG4771	TonB-dependent receptor
ATY45_14395	COG1309	transcriptional regulator
ATY45_14405	COG1960	acyl-CoA dehydrogenase activity
ATY45_14450	COG0330	HflC and HflK could
ATY45_14460	COG3956	TIGRFAM MazG family protein
ATY45_14470	COG0494	nUDIX hydrolase
ATY45_14480	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY45_14485	COG0837	glucose binding
ATY45_14500	COG3858	chitin binding
ATY45_14500	COG1388	LysM domain
ATY45_14505	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY45_14515	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY45_14575	COG3537	Alpha-1,2-mannosidase
ATY45_14615	COG3142	Participates in the control of copper homeostasis
ATY45_14620	COG1446	asparaginase
ATY45_14630	COG2304	oxidoreductase activity
ATY45_14670	COG0840	transmembrane signaling receptor activity
ATY45_14675	COG0835	chemotaxis
ATY45_14690	COG0189	ligase activity
ATY45_14700	COG1397	ADP-ribosylglycohydrolase
ATY45_14710	COG1199	ATP-dependent helicase activity
ATY45_14720	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY45_14735	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY45_14750	COG0535	radical SAM domain protein
ATY45_14755	COG0535	radical SAM domain protein
ATY45_14770	COG0837	glucose binding
ATY45_14775	COG0837	glucose binding
ATY45_14780	COG0837	glucose binding
ATY45_14790	COG1643	Atp-dependent helicase
ATY45_14795	COG0783	Belongs to the Dps family
ATY45_14800	COG0514	ATP-dependent DNA helicase (RecQ)
ATY45_14830	COG3293	Transposase
ATY45_14845	COG0602	queuosine metabolic process
ATY45_14855	COG2885	chlorophyll binding
ATY45_14870	COG0848	biopolymer transport protein
ATY45_14880	COG0824	Thioesterase
ATY45_14985	COG2801	Transposase and inactivated derivatives
ATY45_15010	COG2801	Transposase and inactivated derivatives
ATY45_15015	COG2963	transposase activity
ATY45_15045	COG3328	transposase activity
ATY45_15055	COG3209	COG3209 Rhs family protein
ATY45_15065	COG3501	Rhs element vgr protein
ATY45_15075	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY45_15080	COG1845	cytochrome c oxidase, subunit III
ATY45_15085	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY45_15115	COG0196	riboflavin kinase activity
ATY45_15120	COG0728	peptidoglycan biosynthetic process
ATY45_15125	COG0268	Binds directly to 16S ribosomal RNA
ATY45_15145	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY45_15150	COG0824	Thioesterase
ATY45_15165	COG1946	Acyl-CoA thioesterase
ATY45_15175	COG1595	DNA-templated transcription, initiation
ATY45_15230	COG1877	trehalose-phosphatase activity
ATY45_15235	COG3387	PFAM Glycoside hydrolase 15-related
ATY45_15260	COG0564	pseudouridine synthase activity
ATY45_15265	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY45_15270	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY45_15270	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY45_15280	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY45_15300	COG2184	nucleotidyltransferase activity
ATY45_15320	COG2194	sulfuric ester hydrolase activity
ATY45_15325	COG4969	Belongs to the N-Me-Phe pilin family
ATY45_15335	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY45_15350	COG3039	Transposase
ATY45_15360	COG3039	Transposase
ATY45_15370	COG3293	Transposase
ATY45_15380	COG1132	(ABC) transporter
ATY45_15410	COG0745	RESPONSE REGULATOR receiver
ATY45_15415	COG5000	phosphorelay sensor kinase activity
ATY45_15415	COG5002	protein histidine kinase activity
ATY45_15420	COG0475	glutathione-regulated potassium exporter activity
ATY45_15425	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ATY45_15445	COG1187	pseudouridine synthase activity
ATY45_15450	COG5001	Diguanylate cyclase
ATY45_15450	COG5002	protein histidine kinase activity
ATY45_15555	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_15570	COG0415	Belongs to the DNA photolyase family
ATY45_15575	COG0305	Participates in initiation and elongation during chromosome replication
ATY45_15585	COG0367	asparagine synthase
ATY45_15610	COG1960	acyl-CoA dehydrogenase activity
ATY45_15625	COG0084	hydrolase, TatD family'
ATY45_15630	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY45_15670	COG0735	belongs to the Fur family
ATY45_15710	COG3039	Transposase
ATY45_15730	COG3039	Transposase
ATY45_15755	COG2205	protein histidine kinase activity
ATY45_15770	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY45_15780	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY45_15790	COG2198	Histidine kinase
ATY45_15790	COG0643	Histidine kinase
ATY45_15795	COG0840	transmembrane signaling receptor activity
ATY45_15800	COG0835	chemotaxis
ATY45_15805	COG2202	Pas domain
ATY45_15805	COG2199	diguanylate cyclase activity
ATY45_15805	COG2200	EAL domain
ATY45_15810	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY45_15825	COG3590	peptidase
ATY45_15840	COG1515	deoxyribonuclease V activity
ATY45_15850	COG1741	Belongs to the pirin family
ATY45_15900	COG3501	Rhs element vgr protein
ATY45_15925	COG3501	Rhs element vgr protein
ATY45_15940	COG3501	Rhs element vgr protein
ATY45_15950	COG1741	Belongs to the pirin family
ATY45_15955	COG1966	Carbon starvation protein
ATY45_15960	COG2879	small protein
ATY45_15985	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_15985	COG0604	alcohol dehydrogenase
ATY45_15985	COG3321	synthase
ATY45_15990	COG4251	negative regulation of phosphorylation
ATY45_15990	COG3706	GGDEF domain
ATY45_15990	COG5001	Diguanylate cyclase
ATY45_15990	COG2203	Gaf domain
ATY45_15995	COG0629	single-stranded DNA binding
ATY45_16000	COG0142	geranyltranstransferase activity
ATY45_16030	COG0527	aspartate kinase activity
ATY45_16040	COG0384	phenazine biosynthesis protein PhzF
ATY45_16045	COG0384	phenazine biosynthesis protein PhzF
ATY45_16055	COG1764	response to oxidative stress
ATY45_16085	COG0519	Catalyzes the synthesis of GMP from XMP
ATY45_16115	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY45_16170	COG1959	2 iron, 2 sulfur cluster binding
ATY45_16175	COG0719	Fe-S assembly protein
ATY45_16180	COG0396	ATPase activity
ATY45_16185	COG0719	Fe-S assembly protein
ATY45_16190	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY45_16205	COG3039	Transposase
ATY45_16210	COG2963	transposase activity
ATY45_16215	COG2801	Transposase and inactivated derivatives
ATY45_16230	COG3039	Transposase
ATY45_16260	COG3039	Transposase
ATY45_16265	COG3328	transposase activity
ATY45_16275	COG2963	transposase activity
ATY45_16295	COG0326	Molecular chaperone. Has ATPase activity
ATY45_16300	COG2207	Transcriptional regulator
ATY45_16325	COG0657	acetylesterase activity
ATY45_16325	COG2755	lipolytic protein G-D-S-L family
ATY45_16350	COG0488	(ABC) transporter
ATY45_16390	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY45_16390	COG4651	solute:proton antiporter activity
ATY45_16395	COG2801	Transposase and inactivated derivatives
ATY45_16405	COG4772	TonB-dependent receptor
ATY45_16415	COG4264	IucA IucC family
ATY45_16420	COG2814	Major facilitator Superfamily
ATY45_16430	COG0019	diaminopimelate decarboxylase activity
ATY45_16480	COG4206	TonB-dependent receptor
ATY45_16495	COG2963	transposase activity
ATY45_16510	COG0542	response to heat
ATY45_16555	COG0534	Mate efflux family protein
ATY45_16595	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY45_16605	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY45_16660	COG1555	photosystem II stabilization
ATY45_16665	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY45_16680	COG3178	'Phosphotransferase
ATY45_16685	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY45_16695	COG0628	permease
ATY45_16720	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY45_16745	COG0271	Belongs to the BolA IbaG family
ATY45_16755	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY45_16765	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY45_16770	COG1137	ATPase activity
ATY45_16785	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY45_16805	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY45_16810	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY45_16815	COG2239	Acts as a magnesium transporter
ATY45_16825	COG1294	oxidase, subunit
ATY45_16830	COG1271	oxidase subunit
ATY45_16840	COG1113	amino acid transport
ATY45_16850	COG2197	response regulator
ATY45_16855	COG0531	amino acid
ATY45_16910	COG0789	Transcriptional regulator
ATY45_16935	COG0754	glutathionylspermidine amidase activity
ATY45_16960	COG1842	Phage shock protein A
ATY45_16980	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY45_16990	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY45_17025	COG2201	protein-glutamate methylesterase activity
ATY45_17055	COG2201	protein-glutamate methylesterase activity
ATY45_17090	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY45_17110	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY45_17145	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY45_17150	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY45_17185	COG3039	Transposase
ATY45_17205	COG0745	RESPONSE REGULATOR receiver
ATY45_17210	COG2205	protein histidine kinase activity
ATY45_17225	COG3293	Transposase
ATY45_17230	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY45_17275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY45_17275	COG3453	Protein conserved in bacteria
ATY45_17280	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY45_17285	COG4149	molybdate abc transporter
ATY45_17290	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY45_17310	COG0642	Histidine kinase
ATY45_17315	COG0745	RESPONSE REGULATOR receiver
ATY45_17325	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_17335	COG1022	Amp-dependent synthetase and ligase
ATY45_17360	COG1376	ErfK ybiS ycfS ynhG family protein
ATY45_17365	COG0739	heme binding
ATY45_17370	COG4773	Receptor
ATY45_17375	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY45_17380	COG1301	dicarboxylic acid transport
ATY45_17395	COG2304	oxidoreductase activity
ATY45_17415	COG0714	Associated with various cellular activities
ATY45_17465	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY45_17485	COG0254	rRNA binding
ATY45_17495	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY45_17505	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY45_17525	COG1561	YicC-like family, N-terminal region
ATY45_17545	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY45_17570	COG0006	proline dipeptidase activity
ATY45_17590	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY45_17600	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ATY45_17610	COG2912	Transglutaminase-like superfamily
ATY45_17615	COG1773	rubredoxin
ATY45_17620	COG0352	thiamine-phosphate diphosphorylase activity
ATY45_17640	COG2801	Transposase and inactivated derivatives
ATY45_17645	COG2963	transposase activity
ATY45_17655	COG0280	phosphate acetyltransferase
ATY45_17655	COG0281	malic enzyme
ATY45_17670	COG4191	Histidine kinase
ATY45_17685	COG0583	DNA-binding transcription factor activity
ATY45_17700	COG2197	response regulator
ATY45_17705	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY45_17710	COG0642	Histidine kinase
ATY45_17725	COG2851	Citrate transporter
ATY45_17730	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_17735	COG1609	Transcriptional regulator
ATY45_17765	COG1162	GTPase activity
ATY45_17785	COG0726	polysaccharide deacetylase
ATY45_17790	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY45_17825	COG0242	peptide deformylase activity
ATY45_17845	COG0714	Associated with various cellular activities
ATY45_17865	COG0537	adenosine 5'-monophosphoramidase activity
ATY45_17890	COG0314	molybdopterin synthase activity
ATY45_17895	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY45_17910	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY45_17915	COG1234	tRNA 3'-trailer cleavage
ATY45_17925	COG0859	PFAM glycosyl transferase family 9
ATY45_17935	COG0582	viral genome integration into host DNA
ATY45_17975	COG3501	Rhs element vgr protein
ATY45_18005	COG0631	protein serine/threonine phosphatase activity
ATY45_18010	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY45_18035	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY45_18070	COG0740	serine-type endopeptidase activity
ATY45_18075	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY45_18100	COG2963	transposase activity
ATY45_18130	COG0473	3-isopropylmalate dehydrogenase activity
ATY45_18160	COG4783	chaperone-mediated protein folding
ATY45_18175	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY45_18185	COG0438	transferase activity, transferring glycosyl groups
ATY45_18190	COG0671	phosphoesterase, PA-phosphatase related
ATY45_18210	COG2833	Protein of unknown function (DUF455)
ATY45_18230	COG0285	dihydrofolate synthase activity
ATY45_18235	COG0406	alpha-ribazole phosphatase activity
ATY45_18265	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY45_18270	COG4208	sulfate ABC transporter
ATY45_18275	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY45_18280	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY45_18285	COG0156	8-amino-7-oxononanoate synthase activity
ATY45_18315	COG1902	pentaerythritol trinitrate reductase activity
ATY45_18315	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY45_18325	COG3293	Transposase
ATY45_18360	COG0584	glycerophosphoryl diester phosphodiesterase
ATY45_18370	COG3293	Transposase
ATY45_18390	COG3039	Transposase
ATY45_18405	COG0625	glutathione transferase activity
ATY45_18415	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY45_18440	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY45_18510	COG2963	transposase activity
ATY45_18540	COG3293	Transposase
ATY45_18565	COG3293	Transposase
ATY45_18590	COG3781	membrane
ATY45_18600	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY45_18640	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY45_18750	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY45_18755	COG1538	Outer membrane efflux protein
ATY45_18760	COG1519	Transferase
ATY45_18765	COG1560	Kdo2-lipid A biosynthetic process
ATY45_18805	COG0308	aminopeptidase N
ATY45_18810	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ATY45_18820	COG0330	HflC and HflK could
ATY45_18825	COG0330	HflC and HflK could
ATY45_18845	COG0678	peroxiredoxin activity
ATY45_18855	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_18900	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ATY45_18915	COG3829	transcription factor binding
ATY45_18940	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY45_18945	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY45_18960	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_18985	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY45_19025	COG1518	maintenance of DNA repeat elements
ATY45_19030	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY45_19065	COG2188	Transcriptional regulator
ATY45_19075	COG1450	Type ii and iii secretion system protein
ATY45_19090	COG3166	PFAM Fimbrial assembly family protein
ATY45_19095	COG3156	type II secretion system protein K
ATY45_19100	COG4795	General secretion pathway protein
ATY45_19105	COG2165	general secretion pathway protein
ATY45_19110	COG4970	Tfp pilus assembly protein FimT
ATY45_19115	COG2165	general secretion pathway protein
ATY45_19120	COG1459	type II secretion system
ATY45_19130	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY45_19140	COG5295	Hep Hag repeat protein
ATY45_19145	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY45_19145	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY45_19150	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY45_19155	COG4974	Belongs to the 'phage' integrase family
ATY45_19170	COG0795	lipopolysaccharide-transporting ATPase activity
ATY45_19195	COG0525	valine-tRNA ligase activity
ATY45_19205	COG2963	transposase activity
ATY45_19210	COG2801	Transposase and inactivated derivatives
ATY45_19220	COG3039	Transposase
ATY45_19245	COG3039	Transposase
ATY45_19270	COG1183	phosphatidylcholine synthase activity
ATY45_19295	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY45_19300	COG1127	ABC transporter
ATY45_19305	COG3218	ABC-type transport auxiliary lipoprotein component
ATY45_19305	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY45_19340	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY45_19345	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY45_19345	COG0662	Cupin 2, conserved barrel domain protein
ATY45_19370	COG2086	electron transfer activity
ATY45_19395	COG3328	transposase activity
ATY45_19435	COG0626	cystathionine gamma-synthase activity
ATY45_19475	COG0513	Belongs to the DEAD box helicase family
ATY45_19485	COG0720	synthase
ATY45_19500	COG1956	GAF domain-containing protein
ATY45_19535	COG0339	signal peptide processing
ATY45_19575	COG3293	Transposase
ATY45_19590	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY45_19595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY45_19600	COG3842	ATPase activity
ATY45_19650	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ATY45_19685	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY45_19705	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY45_19715	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY45_19745	COG2011	ABC-type metal ion transport system permease component
ATY45_19755	COG0697	spore germination
ATY45_19790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY45_19795	COG1187	pseudouridine synthase activity
ATY45_19800	COG2813	Specifically methylates the guanine in position
ATY45_19820	COG2205	protein histidine kinase activity
ATY45_19820	COG2202	Pas domain
ATY45_19845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY45_19850	COG1522	sequence-specific DNA binding
ATY45_19890	COG0745	RESPONSE REGULATOR receiver
ATY45_19905	COG1404	Belongs to the peptidase S8 family
ATY45_19925	COG0842	Transport permease protein
ATY45_19930	COG1131	(ABC) transporter
ATY45_19935	COG0025	NhaP-type Na H and K H
ATY45_19950	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY45_19955	COG1573	uracil-dna glycosylase
ATY45_19965	COG3384	dioxygenase
ATY45_19980	COG0667	Aldo Keto reductase
ATY45_19995	COG3590	peptidase
ATY45_20010	COG0531	amino acid
ATY45_20020	COG3279	Response regulator of the LytR AlgR family
ATY45_20025	COG3279	Response regulator of the LytR AlgR family
ATY45_20030	COG2972	Histidine kinase
ATY45_20065	COG1271	oxidase subunit
ATY45_20070	COG1294	oxidase, subunit
ATY45_20080	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_20095	COG3039	Transposase
ATY45_20150	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY45_20160	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY45_20175	COG2963	transposase activity
ATY45_20180	COG2801	Transposase and inactivated derivatives
ATY45_20280	COG2963	transposase activity
ATY45_20425	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY45_20435	COG1560	Kdo2-lipid A biosynthetic process
ATY45_20480	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY45_20480	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY45_20490	COG0242	peptide deformylase activity
ATY45_20495	COG1652	LysM domain
ATY45_20500	COG0758	DNA mediated transformation
ATY45_20520	COG1754	DNA topoisomerase type I activity
ATY45_20520	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY45_20540	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_20550	COG0616	signal peptide processing
ATY45_20555	COG0534	Mate efflux family protein
ATY45_20575	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY45_20595	COG1324	tolerance protein
ATY45_20615	COG0511	ligase activity, forming carbon-carbon bonds
ATY45_20625	COG0439	Biotin carboxylase
ATY45_20660	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY45_20715	COG2831	hemolysin activation secretion protein
ATY45_20735	COG0671	phosphoesterase, PA-phosphatase related
ATY45_20735	COG2453	phosphatase
ATY45_20740	COG2267	carboxylic ester hydrolase activity
ATY45_20750	COG2267	carboxylic ester hydrolase activity
ATY45_20770	COG0151	Belongs to the GarS family
ATY45_20775	COG1136	(ABC) transporter
ATY45_20775	COG0577	efflux transmembrane transporter activity
ATY45_20785	COG1289	transmembrane transporter activity
ATY45_20800	COG2814	Major facilitator Superfamily
ATY45_20820	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY45_20845	COG3293	Transposase
ATY45_20880	COG2963	transposase activity
ATY45_20920	COG0739	heme binding
ATY45_20935	COG2211	Major facilitator Superfamily
ATY45_20940	COG0708	Exodeoxyribonuclease III
ATY45_20955	COG1192	Involved in chromosome partitioning
ATY45_20960	COG1475	DNA binding
ATY45_20975	COG0463	Glycosyl transferase, family 2
ATY45_21000	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY45_21025	COG4221	oxidoreductase activity
ATY45_21030	COG2826	transposase and inactivated derivatives, IS30 family
ATY45_21040	COG1414	Transcriptional regulator
ATY45_21050	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY45_21055	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY45_21060	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY45_21065	COG3485	protocatechuate 3,4-dioxygenase
ATY45_21070	COG3485	protocatechuate 3,4-dioxygenase
ATY45_21090	COG2963	transposase activity
ATY45_21115	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY45_21120	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY45_21130	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY45_21130	COG1042	CoA-binding domain protein
ATY45_21130	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY45_21140	COG2239	Acts as a magnesium transporter
ATY45_21160	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY45_21165	COG3387	PFAM Glycoside hydrolase 15-related
ATY45_21180	COG3100	YcgL domain-containing protein
ATY45_21185	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY45_21195	COG0463	Glycosyl transferase, family 2
ATY45_21210	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_21230	COG1040	competence protein
ATY45_21245	COG0628	permease
ATY45_21255	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY45_21265	COG1595	DNA-templated transcription, initiation
ATY45_21270	COG0753	catalase activity
ATY45_21315	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY45_21320	COG0180	Tryptophanyl-tRNA synthetase
ATY45_21325	COG3237	CsbD-like
ATY45_21380	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY45_21380	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY45_21405	COG2205	protein histidine kinase activity
ATY45_21410	COG0745	RESPONSE REGULATOR receiver
ATY45_21420	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY45_21445	COG1566	PFAM secretion protein HlyD family protein
ATY45_21465	COG1199	ATP-dependent helicase activity
ATY45_21495	COG0583	DNA-binding transcription factor activity
ATY45_21530	COG0625	glutathione transferase activity
ATY45_21565	COG4555	ABC transporter
ATY45_21575	COG1476	TRANSCRIPTIONal
ATY45_21595	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY45_21600	COG1131	(ABC) transporter
ATY45_21605	COG0842	Transport permease protein
ATY45_21665	COG2963	transposase activity
ATY45_21670	COG3293	Transposase
ATY45_21700	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY45_21725	COG0564	pseudouridine synthase activity
ATY45_21745	COG0339	signal peptide processing
ATY45_21765	COG3293	Transposase
ATY45_21780	COG3254	rhamnose metabolic process
ATY45_21785	COG0738	Major facilitator superfamily
ATY45_21790	COG1414	Transcriptional regulator
ATY45_21800	COG3293	Transposase
ATY45_21810	COG2205	protein histidine kinase activity
ATY45_21825	COG3459	Glycosyltransferase 36 associated
ATY45_21830	COG2211	Major facilitator Superfamily
ATY45_21835	COG3265	gluconokinase activity
ATY45_21840	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY45_21860	COG2963	transposase activity
ATY45_21865	COG2801	Transposase and inactivated derivatives
ATY45_21890	COG3039	Transposase
ATY45_21945	COG1127	ABC transporter
ATY45_21950	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY45_21955	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY45_21970	COG2853	Lipoprotein
ATY45_21990	COG3293	Transposase
ATY45_22010	COG2963	transposase activity
ATY45_22045	COG3135	benzoate transporter
ATY45_22050	COG3135	benzoate transporter
ATY45_22070	COG0676	glucose-6-phosphate 1-epimerase activity
ATY45_22090	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY45_22095	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY45_22100	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY45_22105	COG1064	alcohol dehydrogenase
ATY45_22150	COG4773	Receptor
ATY45_22175	COG1522	sequence-specific DNA binding
ATY45_22180	COG3186	Phenylalanine-4-hydroxylase
ATY45_22190	COG2755	lipolytic protein G-D-S-L family
ATY45_22205	COG2963	transposase activity
ATY45_22220	COG0656	L-ascorbic acid biosynthetic process
ATY45_22225	COG2130	NADP-dependent
ATY45_22230	COG0667	Aldo Keto reductase
ATY45_22240	COG1187	pseudouridine synthase activity
ATY45_22255	COG1643	Atp-dependent helicase
ATY45_22260	COG4807	Protein conserved in bacteria
ATY45_22265	COG4948	Mandelate Racemase Muconate Lactonizing
ATY45_22270	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY45_22275	COG1028	Short-chain dehydrogenase reductase Sdr
ATY45_22295	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY45_22335	COG3162	membrane
ATY45_22340	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY45_22350	COG0708	Exodeoxyribonuclease III
ATY45_22365	COG2091	lysine biosynthetic process via aminoadipic acid
ATY45_22375	COG3540	Alkaline phosphatase
ATY45_22380	COG0357	Ribosomal RNA small subunit methyltransferase G
ATY45_22395	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY45_22400	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY45_22405	COG2159	amidohydrolase
ATY45_22420	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY45_22425	COG0583	DNA-binding transcription factor activity
ATY45_22430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY45_22445	COG0210	DNA helicase
ATY45_22460	COG0531	amino acid
ATY45_22465	COG1322	Protein conserved in bacteria
ATY45_22475	COG0386	Belongs to the glutathione peroxidase family
ATY45_22490	COG3293	Transposase
ATY45_22525	COG0793	Belongs to the peptidase S41A family
ATY45_22530	COG4942	peptidase
ATY45_22540	COG2234	aminopeptidase activity
ATY45_22585	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY45_22590	COG0302	gtp cyclohydrolase
ATY45_22610	COG0477	Major facilitator Superfamily
ATY45_22690	COG1929	Belongs to the glycerate kinase type-1 family
ATY45_22695	COG2271	Major facilitator Superfamily
ATY45_22710	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY45_22715	COG0861	Integral membrane protein TerC family
ATY45_22725	COG0584	glycerophosphoryl diester phosphodiesterase
ATY45_22735	COG0671	phosphoesterase, PA-phosphatase related
ATY45_22745	COG0726	polysaccharide deacetylase
ATY45_22760	COG0230	Belongs to the bacterial ribosomal protein bL34 family