ATY45_00005	SM00382	ATPases associated with a variety of cellular activities
ATY45_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATY45_00010	SM00480	DNA polymerase III beta subunit
ATY45_00020	SM00387	Histidine kinase-like ATPases
ATY45_00020	SM00433	TopoisomeraseII
ATY45_00035	SM00028	Tetratricopeptide repeats
ATY45_00070	SM00155	Phospholipase D. Active site motifs.
ATY45_00190	SM01126	ATY45_00190
ATY45_00275	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_00295	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY45_00400	SM00382	ATPases associated with a variety of cellular activities
ATY45_00490	SM00267	diguanylate cyclase
ATY45_00500	SM00642	Alpha-amylase domain
ATY45_00505	SM00642	Alpha-amylase domain
ATY45_00515	SM00642	Alpha-amylase domain
ATY45_00525	SM00642	Alpha-amylase domain
ATY45_00555	SM01126	ATY45_00555
ATY45_00600	SM00487	DEAD-like helicases superfamily
ATY45_00600	SM00490	helicase superfamily c-terminal domain
ATY45_00635	SM01126	ATY45_00635
ATY45_00660	SM00487	DEAD-like helicases superfamily
ATY45_00660	SM00490	helicase superfamily c-terminal domain
ATY45_00735	SM01126	ATY45_00735
ATY45_00775	SM00354	helix_turn _helix lactose operon repressor
ATY45_00795	SM00642	Alpha-amylase domain
ATY45_00800	SM00642	Alpha-amylase domain
ATY45_00805	SM00642	Alpha-amylase domain
ATY45_00820	SM01126	ATY45_00820
ATY45_00860	SM00382	ATPases associated with a variety of cellular activities
ATY45_00870	SM00938	Nitrogen regulatory protein P-II
ATY45_00880	SM01126	ATY45_00880
ATY45_00935	SM01228	ATY45_00935
ATY45_01000	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_01000	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_01035	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATY45_01055	SM00354	helix_turn _helix lactose operon repressor
ATY45_01065	SM00563	Phosphate acyltransferases
ATY45_01070	SM00829	Enoylreductase
ATY45_01135	SM00382	ATPases associated with a variety of cellular activities
ATY45_01150	SM00382	ATPases associated with a variety of cellular activities
ATY45_01180	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_01205	SM00855	Phosphoglycerate mutase family
ATY45_01210	SM00867	YceI-like domain 
ATY45_01215	SM00155	Phospholipase D. Active site motifs.
ATY45_01225	SM00563	Phosphate acyltransferases
ATY45_01240	SM00028	Tetratricopeptide repeats
ATY45_01265	SM01230	ATY45_01265
ATY45_01270	SM00938	Nitrogen regulatory protein P-II
ATY45_01280	SM00387	Histidine kinase-like ATPases
ATY45_01280	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_01285	SM00382	ATPases associated with a variety of cellular activities
ATY45_01285	SM00448	cheY-homologous receiver domain
ATY45_01305	SM01126	ATY45_01305
ATY45_01375	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_01425	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_01450	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_01565	SM00633	Glycosyl hydrolase family 10
ATY45_01570	SM00633	Glycosyl hydrolase family 10
ATY45_01600	SM00758	ATY45_01600
ATY45_01600	SM01217	ATY45_01600
ATY45_01610	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_01625	SM00354	helix_turn _helix lactose operon repressor
ATY45_01705	SM00382	ATPases associated with a variety of cellular activities
ATY45_01715	SM00836	DALR anticodon binding domain
ATY45_01760	SM00833	Cobalamin synthesis protein cobW C-terminal domain
ATY45_01830	SM00878	Biotin carboxylase C-terminal domain
ATY45_01895	SM01126	ATY45_01895
ATY45_01965	SM00448	cheY-homologous receiver domain
ATY45_01965	SM00862	Transcriptional regulatory protein, C terminal
ATY45_01970	SM00387	Histidine kinase-like ATPases
ATY45_01975	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_02085	SM00563	Phosphate acyltransferases
ATY45_02145	SM00357	Cold shock protein domain
ATY45_02145	SM00382	ATPases associated with a variety of cellular activities
ATY45_02145	SM00959	Rho termination factor, N-terminal domain
ATY45_02155	SM00487	DEAD-like helicases superfamily
ATY45_02155	SM00490	helicase superfamily c-terminal domain
ATY45_02160	SM00382	ATPases associated with a variety of cellular activities
ATY45_02170	SM00448	cheY-homologous receiver domain
ATY45_02175	SM00986	Uracil DNA glycosylase superfamily
ATY45_02175	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_02220	SM00883	Chaperonin 10 Kd subunit
ATY45_02265	SM01126	ATY45_02265
ATY45_02305	SM00944	Pro-kumamolisin, activation domain
ATY45_02335	SM00867	YceI-like domain 
ATY45_02350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_02350	SM00331	Sigma factor PP2C-like phosphatases
ATY45_02435	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY45_02435	SM00474	3'-5' exonuclease
ATY45_02435	SM00475	5'-3' exonuclease
ATY45_02435	SM00482	DNA polymerase A domain
ATY45_02495	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_02500	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_02580	SM00382	ATPases associated with a variety of cellular activities
ATY45_02580	SM00448	cheY-homologous receiver domain
ATY45_02585	SM00387	Histidine kinase-like ATPases
ATY45_02585	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_02610	SM00450	Rhodanese Homology Domain
ATY45_02625	SM01126	ATY45_02625
ATY45_02635	SM01150	ATY45_02635
ATY45_02700	SM01126	ATY45_02700
ATY45_02715	SM00382	ATPases associated with a variety of cellular activities
ATY45_02775	SM00400	zinc finger
ATY45_02775	SM00493	ATY45_02775
ATY45_02775	SM00766	DNA primase DnaG DnaB-binding
ATY45_02810	SM00905	Dihydroneopterin aldolase
ATY45_02815	SM01217	ATY45_02815
ATY45_02825	SM01126	ATY45_02825
ATY45_02845	SM01126	ATY45_02845
ATY45_02855	SM01126	ATY45_02855
ATY45_02915	SM01126	ATY45_02915
ATY45_02930	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_02940	SM00644	ATY45_02940
ATY45_03040	SM01126	ATY45_03040
ATY45_03070	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_03165	SM00271	DnaJ molecular chaperone homology domain
ATY45_03180	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATY45_03280	SM00060	Fibronectin type 3 domain
ATY45_03350	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_03360	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_03360	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_03360	SM00091	PAS domain
ATY45_03360	SM00267	diguanylate cyclase
ATY45_03375	SM00637	ATY45_03375
ATY45_03390	SM00267	diguanylate cyclase
ATY45_03430	SM00448	cheY-homologous receiver domain
ATY45_03430	SM00850	LytTr DNA-binding domain
ATY45_03510	SM00382	ATPases associated with a variety of cellular activities
ATY45_03510	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_03525	SM01263	ATY45_03525
ATY45_03530	SM00267	diguanylate cyclase
ATY45_03595	SM00268	Actin
ATY45_03690	SM00936	Penicillin-binding protein 5, C-terminal domain 
ATY45_03710	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_03715	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_03715	SM00245	tail specific protease
ATY45_03765	SM01350	ATY45_03765
ATY45_03775	SM00749	bacterial OsmY and nodulation domain
ATY45_03780	SM00387	Histidine kinase-like ATPases
ATY45_03780	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_03785	SM00448	cheY-homologous receiver domain
ATY45_03790	SM00387	Histidine kinase-like ATPases
ATY45_03790	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_03790	SM00448	cheY-homologous receiver domain
ATY45_03850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_03850	SM00866	ATY45_03850
ATY45_03860	SM00354	helix_turn _helix lactose operon repressor
ATY45_03900	SM01126	ATY45_03900
ATY45_03920	SM01126	ATY45_03920
ATY45_04060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_04060	SM00387	Histidine kinase-like ATPases
ATY45_04060	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_04065	SM00448	cheY-homologous receiver domain
ATY45_04065	SM00862	Transcriptional regulatory protein, C terminal
ATY45_04085	SM00829	Enoylreductase
ATY45_04115	SM00382	ATPases associated with a variety of cellular activities
ATY45_04235	SM00387	Histidine kinase-like ATPases
ATY45_04235	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_04240	SM00448	cheY-homologous receiver domain
ATY45_04240	SM00862	Transcriptional regulatory protein, C terminal
ATY45_04340	SM00842	Cell division protein FtsA
ATY45_04345	SM00864	Tubulin/FtsZ family, GTPase domain
ATY45_04345	SM00865	Tubulin/FtsZ family, C-terminal domain
ATY45_04365	SM00957	SecA DEAD-like domain
ATY45_04365	SM00958	SecA preprotein cross-linking domain
ATY45_04395	SM00829	Enoylreductase
ATY45_04460	SM00996	S-adenosyl-L-homocysteine hydrolase
ATY45_04460	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATY45_04580	SM00382	ATPases associated with a variety of cellular activities
ATY45_04600	SM00382	ATPases associated with a variety of cellular activities
ATY45_04610	SM00448	cheY-homologous receiver domain
ATY45_04610	SM00862	Transcriptional regulatory protein, C terminal
ATY45_04615	SM00387	Histidine kinase-like ATPases
ATY45_04615	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_04675	SM00650	Ribosomal RNA adenine dimethylases
ATY45_04730	SM01126	ATY45_04730
ATY45_04775	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_04870	SM00448	cheY-homologous receiver domain
ATY45_04875	SM00387	Histidine kinase-like ATPases
ATY45_04875	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_04875	SM00448	cheY-homologous receiver domain
ATY45_04880	SM00421	helix_turn_helix, Lux Regulon
ATY45_04905	SM01126	ATY45_04905
ATY45_04975	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATY45_04975	SM00475	5'-3' exonuclease
ATY45_04990	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATY45_04990	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATY45_05100	SM00852	Probable molybdopterin binding domain
ATY45_05105	SM00028	Tetratricopeptide repeats
ATY45_05110	SM00937	ATY45_05110
ATY45_05120	SM00028	Tetratricopeptide repeats
ATY45_05140	SM01400	ATY45_05140
ATY45_05190	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATY45_05190	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY45_05195	SM00649	Ribosomal protein L11/L12
ATY45_05220	SM00663	RNA polymerase I subunit A N-terminus
ATY45_05235	SM00838	Elongation factor G C-terminus
ATY45_05235	SM00889	Elongation factor G, domain IV
ATY45_05245	SM01403	ATY45_05245
ATY45_05265	SM01382	ATY45_05265
ATY45_05265	SM01383	ATY45_05265
ATY45_05280	SM00322	K homology RNA-binding domain
ATY45_05300	SM01374	ATY45_05300
ATY45_05305	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATY45_05365	SM00363	S4 RNA-binding domain
ATY45_05365	SM01390	ATY45_05365
ATY45_05370	SM00662	RNA polymerases D
ATY45_05425	SM00990	ATY45_05425
ATY45_05455	SM00382	ATPases associated with a variety of cellular activities
ATY45_05490	SM00448	cheY-homologous receiver domain
ATY45_05490	SM00862	Transcriptional regulatory protein, C terminal
ATY45_05495	SM00387	Histidine kinase-like ATPases
ATY45_05495	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_05540	SM00421	helix_turn_helix, Lux Regulon
ATY45_05540	SM00448	cheY-homologous receiver domain
ATY45_05555	SM00478	endonuclease III
ATY45_05815	SM00382	ATPases associated with a variety of cellular activities
ATY45_05815	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_05920	SM00487	DEAD-like helicases superfamily
ATY45_05920	SM00490	helicase superfamily c-terminal domain
ATY45_05955	SM00487	DEAD-like helicases superfamily
ATY45_05965	SM00220	Serine/Threonine protein kinases, catalytic domain
ATY45_05995	SM00855	Phosphoglycerate mutase family
ATY45_06020	SM00966	SpoVT / AbrB like domain 
ATY45_06040	SM00481	DNA polymerase alpha chain like domain
ATY45_06045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_06095	SM00091	PAS domain
ATY45_06095	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_06115	SM01060	ATY45_06115
ATY45_06175	SM00506	Appr-1"-p processing enzyme
ATY45_06210	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_06210	SM00387	Histidine kinase-like ATPases
ATY45_06295	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY45_06310	SM01126	ATY45_06310
ATY45_06385	SM00869	Autotransporter beta-domain
ATY45_06395	SM01126	ATY45_06395
ATY45_06430	SM00528	Domain in histone-like proteins of HNS family
ATY45_06465	SM01126	ATY45_06465
ATY45_06470	SM01126	ATY45_06470
ATY45_06480	SM00642	Alpha-amylase domain
ATY45_06495	SM01126	ATY45_06495
ATY45_06550	SM01126	ATY45_06550
ATY45_06655	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_06720	SM00977	TilS substrate C-terminal domain
ATY45_06725	SM00098	Alkaline phosphatase homologues
ATY45_06775	SM01126	ATY45_06775
ATY45_06785	SM01160	ATY45_06785
ATY45_06825	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_06860	SM00257	Lysin motif
ATY45_06890	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY45_06960	SM00052	Putative diguanylate phosphodiesterase
ATY45_06960	SM00267	diguanylate cyclase
ATY45_06960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_06990	SM00822	ATY45_06990
ATY45_07035	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
ATY45_07040	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
ATY45_07090	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_07090	SM00322	K homology RNA-binding domain
ATY45_07110	SM01387	ATY45_07110
ATY45_07115	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_07115	SM00322	K homology RNA-binding domain
ATY45_07135	SM01001	AIR carboxylase
ATY45_07215	SM00487	DEAD-like helicases superfamily
ATY45_07215	SM00490	helicase superfamily c-terminal domain
ATY45_07245	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY45_07270	SM00873	B3/4 domain
ATY45_07270	SM00874	tRNA synthetase B5 domain
ATY45_07270	SM00896	Ferredoxin-fold anticodon binding domain
ATY45_07275	SM00411	bacterial (prokaryotic) histone like domain
ATY45_07280	SM00422	helix_turn_helix, mercury resistance
ATY45_07470	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_07470	SM00091	PAS domain
ATY45_07470	SM00387	Histidine kinase-like ATPases
ATY45_07470	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_07470	SM00448	cheY-homologous receiver domain
ATY45_07480	SM00478	endonuclease III
ATY45_07490	SM00382	ATPases associated with a variety of cellular activities
ATY45_07490	SM00962	SRP54-type protein, GTPase domain
ATY45_07490	SM00963	SRP54-type protein, helical bundle domain
ATY45_07495	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_07520	SM01130	ATY45_07520
ATY45_07585	SM00944	Pro-kumamolisin, activation domain
ATY45_07650	SM01126	ATY45_07650
ATY45_07670	SM00852	Probable molybdopterin binding domain
ATY45_07710	SM01012	ATY45_07710
ATY45_07720	SM01126	ATY45_07720
ATY45_07730	SM01126	ATY45_07730
ATY45_07770	SM00984	UDP binding domain
ATY45_07790	SM00450	Rhodanese Homology Domain
ATY45_07795	SM00421	helix_turn_helix, Lux Regulon
ATY45_07795	SM00448	cheY-homologous receiver domain
ATY45_07815	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_07820	SM00363	S4 RNA-binding domain
ATY45_07950	SM00382	ATPases associated with a variety of cellular activities
ATY45_07950	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_07980	SM00240	Forkhead associated domain
ATY45_08005	SM00331	Sigma factor PP2C-like phosphatases
ATY45_08005	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY45_08030	SM00387	Histidine kinase-like ATPases
ATY45_08040	SM00448	cheY-homologous receiver domain
ATY45_08040	SM00862	Transcriptional regulatory protein, C terminal
ATY45_08275	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_08285	SM00382	ATPases associated with a variety of cellular activities
ATY45_08310	SM01091	Transporter associated domain
ATY45_08335	SM00387	Histidine kinase-like ATPases
ATY45_08335	SM00433	TopoisomeraseII
ATY45_08360	SM01192	ATY45_08360
ATY45_08360	SM01193	ATY45_08360
ATY45_08385	SM00463	Small MutS-related domain
ATY45_08405	SM00257	Lysin motif
ATY45_08415	SM01103	ATY45_08415
ATY45_08425	SM00382	ATPases associated with a variety of cellular activities
ATY45_08465	SM00382	ATPases associated with a variety of cellular activities
ATY45_08475	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATY45_08580	SM00670	Large family of predicted nucleotide-binding domains
ATY45_08600	SM01130	ATY45_08600
ATY45_08625	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_08645	SM00758	ATY45_08645
ATY45_08690	SM00841	Elongation factor P, C-terminal
ATY45_08690	SM01185	ATY45_08690
ATY45_08695	SM00822	ATY45_08695
ATY45_08715	SM00899	ATY45_08715
ATY45_08765	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATY45_08775	SM00851	MGS-like domain
ATY45_08775	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATY45_08800	SM01126	ATY45_08800
ATY45_08825	SM00850	LytTr DNA-binding domain
ATY45_08830	SM00937	ATY45_08830
ATY45_08840	SM00448	cheY-homologous receiver domain
ATY45_08840	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_08850	SM00073	Histidine Phosphotransfer domain
ATY45_08850	SM00387	Histidine kinase-like ATPases
ATY45_08850	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_08850	SM00448	cheY-homologous receiver domain
ATY45_08875	SM00966	SpoVT / AbrB like domain 
ATY45_08895	SM00052	Putative diguanylate phosphodiesterase
ATY45_08895	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_08895	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_08895	SM00091	PAS domain
ATY45_08895	SM00267	diguanylate cyclase
ATY45_08900	SM00448	cheY-homologous receiver domain
ATY45_08910	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_08960	SM00260	Two component signalling adaptor domain
ATY45_08970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_08970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_08975	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_08975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_08980	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_08980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_08985	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_08985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_08990	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_08990	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_08995	SM01126	ATY45_08995
ATY45_09000	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_09030	SM00073	Histidine Phosphotransfer domain
ATY45_09030	SM00260	Two component signalling adaptor domain
ATY45_09030	SM00387	Histidine kinase-like ATPases
ATY45_09030	SM01231	ATY45_09030
ATY45_09035	SM00448	cheY-homologous receiver domain
ATY45_09045	SM00260	Two component signalling adaptor domain
ATY45_09165	SM00354	helix_turn _helix lactose operon repressor
ATY45_09175	SM01126	ATY45_09175
ATY45_09210	SM00448	cheY-homologous receiver domain
ATY45_09210	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_09215	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_09215	SM00091	PAS domain
ATY45_09215	SM00387	Histidine kinase-like ATPases
ATY45_09215	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_09215	SM00448	cheY-homologous receiver domain
ATY45_09215	SM01079	ATY45_09215
ATY45_09285	SM00267	diguanylate cyclase
ATY45_09285	SM00448	cheY-homologous receiver domain
ATY45_09295	SM01230	ATY45_09295
ATY45_09305	SM01230	ATY45_09305
ATY45_09365	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_09365	SM01091	Transporter associated domain
ATY45_09390	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_09460	SM01126	ATY45_09460
ATY45_09465	SM01126	ATY45_09465
ATY45_09515	SM00528	Domain in histone-like proteins of HNS family
ATY45_09530	SM00474	3'-5' exonuclease
ATY45_09570	SM00646	ATY45_09570
ATY45_09575	SM00853	MutL C terminal dimerisation domain
ATY45_09575	SM01340	ATY45_09575
ATY45_09595	SM00822	ATY45_09595
ATY45_09610	SM00052	Putative diguanylate phosphodiesterase
ATY45_09610	SM00267	diguanylate cyclase
ATY45_09620	SM01322	ATY45_09620
ATY45_09630	SM00357	Cold shock protein domain
ATY45_09655	SM00382	ATPases associated with a variety of cellular activities
ATY45_09655	SM00487	DEAD-like helicases superfamily
ATY45_09655	SM00490	helicase superfamily c-terminal domain
ATY45_09660	SM00382	ATPases associated with a variety of cellular activities
ATY45_09700	SM00052	Putative diguanylate phosphodiesterase
ATY45_09700	SM00267	diguanylate cyclase
ATY45_09700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_09710	SM00841	Elongation factor P, C-terminal
ATY45_09710	SM01185	ATY45_09710
ATY45_09845	SM00387	Histidine kinase-like ATPases
ATY45_10035	SM00344	helix_turn_helix ASNC type
ATY45_10050	SM01323	ATY45_10050
ATY45_10115	SM00479	ATY45_10115
ATY45_10130	SM00382	ATPases associated with a variety of cellular activities
ATY45_10175	SM00947	Carbonic anhydrase
ATY45_10185	SM00478	endonuclease III
ATY45_10210	SM00450	Rhodanese Homology Domain
ATY45_10220	SM00644	ATY45_10220
ATY45_10250	SM00981	ATY45_10250
ATY45_10280	SM00479	ATY45_10280
ATY45_10305	SM00947	Carbonic anhydrase
ATY45_10360	SM00968	SMC proteins Flexible Hinge Domain
ATY45_10365	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ATY45_10375	SM00292	breast cancer carboxy-terminal domain
ATY45_10375	SM00532	Ligase N family
ATY45_10395	SM00434	DNA Topoisomerase IV
ATY45_10445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_10445	SM00866	ATY45_10445
ATY45_10465	SM00240	Forkhead associated domain
ATY45_10490	SM00830	Chorismate mutase type II
ATY45_10520	SM00869	Autotransporter beta-domain
ATY45_10525	SM00421	helix_turn_helix, Lux Regulon
ATY45_10525	SM00448	cheY-homologous receiver domain
ATY45_10530	SM00387	Histidine kinase-like ATPases
ATY45_10530	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_10550	SM00869	Autotransporter beta-domain
ATY45_10580	SM00646	ATY45_10580
ATY45_10650	SM00052	Putative diguanylate phosphodiesterase
ATY45_10650	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_10650	SM00267	diguanylate cyclase
ATY45_10665	SM01217	ATY45_10665
ATY45_10670	SM00631	ATY45_10670
ATY45_10700	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_10745	SM00382	ATPases associated with a variety of cellular activities
ATY45_10800	SM00267	diguanylate cyclase
ATY45_10915	SM00382	ATPases associated with a variety of cellular activities
ATY45_10950	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY45_10955	SM00226	Low molecular weight phosphatase family
ATY45_10975	SM00450	Rhodanese Homology Domain
ATY45_10995	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_10995	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_10995	SM00091	PAS domain
ATY45_10995	SM00387	Histidine kinase-like ATPases
ATY45_10995	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_10995	SM00448	cheY-homologous receiver domain
ATY45_11000	SM00448	cheY-homologous receiver domain
ATY45_11060	SM00382	ATPases associated with a variety of cellular activities
ATY45_11110	SM00382	ATPases associated with a variety of cellular activities
ATY45_11120	SM01126	ATY45_11120
ATY45_11125	SM00849	Metallo-beta-lactamase superfamily
ATY45_11140	SM00382	ATPases associated with a variety of cellular activities
ATY45_11155	SM00226	Low molecular weight phosphatase family
ATY45_11165	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY45_11165	SM00465	GIY-YIG type nucleases (URI domain)
ATY45_11200	SM01126	ATY45_11200
ATY45_11280	SM01126	ATY45_11280
ATY45_11515	SM00014	Acid phosphatase homologues
ATY45_11525	SM00387	Histidine kinase-like ATPases
ATY45_11530	SM00448	cheY-homologous receiver domain
ATY45_11540	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_11540	SM00732	Likely ribonuclease with RNase H fold.
ATY45_11610	SM00479	ATY45_11610
ATY45_11620	SM00529	Helix-turn-helix diphteria tox regulatory element
ATY45_11630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_11685	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_11685	SM01240	ATY45_11685
ATY45_11735	SM00822	ATY45_11735
ATY45_11755	SM00411	bacterial (prokaryotic) histone like domain
ATY45_11760	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_11860	SM00363	S4 RNA-binding domain
ATY45_11875	SM01126	ATY45_11875
ATY45_11890	SM00382	ATPases associated with a variety of cellular activities
ATY45_11975	SM01007	Class II Aldolase and Adducin N-terminal domain
ATY45_12020	SM00450	Rhodanese Homology Domain
ATY45_12030	SM01126	ATY45_12030
ATY45_12100	SM00852	Probable molybdopterin binding domain
ATY45_12105	SM00382	ATPases associated with a variety of cellular activities
ATY45_12110	SM00564	beta-propeller repeat
ATY45_12125	SM00028	Tetratricopeptide repeats
ATY45_12135	SM00562	ATY45_12135
ATY45_12185	SM00382	ATPases associated with a variety of cellular activities
ATY45_12205	SM00382	ATPases associated with a variety of cellular activities
ATY45_12205	SM00843	ATY45_12205
ATY45_12235	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_12240	SM00382	ATPases associated with a variety of cellular activities
ATY45_12240	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_12265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_12280	SM00052	Putative diguanylate phosphodiesterase
ATY45_12280	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_12280	SM00091	PAS domain
ATY45_12280	SM00267	diguanylate cyclase
ATY45_12285	SM00091	PAS domain
ATY45_12285	SM00387	Histidine kinase-like ATPases
ATY45_12290	SM00052	Putative diguanylate phosphodiesterase
ATY45_12290	SM00267	diguanylate cyclase
ATY45_12290	SM00448	cheY-homologous receiver domain
ATY45_12295	SM00387	Histidine kinase-like ATPases
ATY45_12310	SM00858	ATY45_12310
ATY45_12315	SM00260	Two component signalling adaptor domain
ATY45_12315	SM00448	cheY-homologous receiver domain
ATY45_12360	SM00047	Lysozyme subfamily 2
ATY45_12400	SM00421	helix_turn_helix, Lux Regulon
ATY45_12400	SM00448	cheY-homologous receiver domain
ATY45_12410	SM00448	cheY-homologous receiver domain
ATY45_12415	SM00382	ATPases associated with a variety of cellular activities
ATY45_12435	SM00822	ATY45_12435
ATY45_12440	SM00822	ATY45_12440
ATY45_12490	SM00382	ATPases associated with a variety of cellular activities
ATY45_12545	SM00267	diguanylate cyclase
ATY45_12550	SM00267	diguanylate cyclase
ATY45_12555	SM00052	Putative diguanylate phosphodiesterase
ATY45_12555	SM00267	diguanylate cyclase
ATY45_12570	SM00382	ATPases associated with a variety of cellular activities
ATY45_12570	SM00962	SRP54-type protein, GTPase domain
ATY45_12585	SM00448	cheY-homologous receiver domain
ATY45_12595	SM00073	Histidine Phosphotransfer domain
ATY45_12595	SM00260	Two component signalling adaptor domain
ATY45_12595	SM00387	Histidine kinase-like ATPases
ATY45_12595	SM01231	ATY45_12595
ATY45_12645	SM01126	ATY45_12645
ATY45_12730	SM01126	ATY45_12730
ATY45_12740	SM00382	ATPases associated with a variety of cellular activities
ATY45_12745	SM00382	ATPases associated with a variety of cellular activities
ATY45_12780	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ATY45_12790	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ATY45_12810	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATY45_12850	SM00840	ATY45_12850
ATY45_12865	SM00245	tail specific protease
ATY45_12880	SM01234	ATY45_12880
ATY45_13000	SM01126	ATY45_13000
ATY45_13050	SM01126	ATY45_13050
ATY45_13080	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATY45_13090	SM00316	Ribosomal protein S1-like RNA-binding domain
ATY45_13090	SM00357	Cold shock protein domain
ATY45_13090	SM00955	ATY45_13090
ATY45_13115	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATY45_13125	SM01018	B12 binding domain
ATY45_13145	SM00354	helix_turn _helix lactose operon repressor
ATY45_13165	SM00984	UDP binding domain
ATY45_13180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_13185	SM00382	ATPases associated with a variety of cellular activities
ATY45_13275	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_13280	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_13290	SM00861	Transketolase, pyrimidine binding domain
ATY45_13315	SM00382	ATPases associated with a variety of cellular activities
ATY45_13345	SM00271	DnaJ molecular chaperone homology domain
ATY45_13415	SM00507	HNH nucleases
ATY45_13420	SM00861	Transketolase, pyrimidine binding domain
ATY45_13445	SM01126	ATY45_13445
ATY45_13490	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATY45_13495	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_13500	SM00434	DNA Topoisomerase IV
ATY45_13530	SM00710	Parallel beta-helix repeats
ATY45_13530	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
ATY45_13535	SM01172	ATY45_13535
ATY45_13565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_13575	SM00972	Spore Coat Protein U domain
ATY45_13590	SM00972	Spore Coat Protein U domain
ATY45_13645	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_13680	SM00481	DNA polymerase alpha chain like domain
ATY45_13700	SM00382	ATPases associated with a variety of cellular activities
ATY45_14030	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATY45_14035	SM00869	Autotransporter beta-domain
ATY45_14055	SM00267	diguanylate cyclase
ATY45_14085	SM00487	DEAD-like helicases superfamily
ATY45_14085	SM00490	helicase superfamily c-terminal domain
ATY45_14100	SM00357	Cold shock protein domain
ATY45_14145	SM01118	ATY45_14145
ATY45_14155	SM00448	cheY-homologous receiver domain
ATY45_14170	SM00358	Double-stranded RNA binding motif
ATY45_14170	SM00535	Ribonuclease III family
ATY45_14185	SM00838	Elongation factor G C-terminus
ATY45_14190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_14240	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_14270	SM00812	Alpha-L-fucosidase
ATY45_14290	SM00387	Histidine kinase-like ATPases
ATY45_14290	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_14290	SM00448	cheY-homologous receiver domain
ATY45_14295	SM00387	Histidine kinase-like ATPases
ATY45_14295	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_14295	SM00448	cheY-homologous receiver domain
ATY45_14300	SM00387	Histidine kinase-like ATPases
ATY45_14300	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_14300	SM00448	cheY-homologous receiver domain
ATY45_14305	SM00867	YceI-like domain 
ATY45_14315	SM00867	YceI-like domain 
ATY45_14365	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_14450	SM00244	prohibitin homologues
ATY45_14495	SM00812	Alpha-L-fucosidase
ATY45_14500	SM00636	ATY45_14500
ATY45_14515	SM00758	ATY45_14515
ATY45_14515	SM01217	ATY45_14515
ATY45_14520	SM00382	ATPases associated with a variety of cellular activities
ATY45_14570	SM01149	ATY45_14570
ATY45_14610	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ATY45_14630	SM00327	von Willebrand factor (vWF) type A domain
ATY45_14655	SM00260	Two component signalling adaptor domain
ATY45_14665	SM00073	Histidine Phosphotransfer domain
ATY45_14665	SM00260	Two component signalling adaptor domain
ATY45_14665	SM00387	Histidine kinase-like ATPases
ATY45_14665	SM00448	cheY-homologous receiver domain
ATY45_14665	SM01231	ATY45_14665
ATY45_14670	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_14675	SM00260	Two component signalling adaptor domain
ATY45_14680	SM00448	cheY-homologous receiver domain
ATY45_14685	SM00448	cheY-homologous receiver domain
ATY45_14710	SM00491	ATY45_14710
ATY45_14735	SM00954	Region found in RelA / SpoT proteins
ATY45_14790	SM00382	ATPases associated with a variety of cellular activities
ATY45_14790	SM00487	DEAD-like helicases superfamily
ATY45_14790	SM00490	helicase superfamily c-terminal domain
ATY45_14790	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY45_14800	SM00341	Helicase and RNase D C-terminal
ATY45_14800	SM00487	DEAD-like helicases superfamily
ATY45_14800	SM00490	helicase superfamily c-terminal domain
ATY45_14800	SM00956	ATY45_14800
ATY45_14810	SM00448	cheY-homologous receiver domain
ATY45_14885	SM00382	ATPases associated with a variety of cellular activities
ATY45_14895	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATY45_14930	SM00834	Putative regulatory protein
ATY45_14970	SM00382	ATPases associated with a variety of cellular activities
ATY45_14995	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ATY45_14995	SM00534	ATPase domain of DNA mismatch repair MUTS family
ATY45_15070	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_15115	SM00904	Riboflavin kinase
ATY45_15280	SM00881	CoA binding domain
ATY45_15290	SM00387	Histidine kinase-like ATPases
ATY45_15290	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_15295	SM00382	ATPases associated with a variety of cellular activities
ATY45_15295	SM00448	cheY-homologous receiver domain
ATY45_15380	SM00382	ATPases associated with a variety of cellular activities
ATY45_15410	SM00448	cheY-homologous receiver domain
ATY45_15410	SM00862	Transcriptional regulatory protein, C terminal
ATY45_15415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_15415	SM00387	Histidine kinase-like ATPases
ATY45_15415	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_15445	SM00363	S4 RNA-binding domain
ATY45_15450	SM00052	Putative diguanylate phosphodiesterase
ATY45_15450	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_15450	SM00091	PAS domain
ATY45_15450	SM00267	diguanylate cyclase
ATY45_15455	SM00487	DEAD-like helicases superfamily
ATY45_15455	SM00490	helicase superfamily c-terminal domain
ATY45_15520	SM00829	Enoylreductase
ATY45_15645	SM00357	Cold shock protein domain
ATY45_15705	SM00645	Papain family cysteine protease
ATY45_15720	SM00645	Papain family cysteine protease
ATY45_15740	SM00645	Papain family cysteine protease
ATY45_15755	SM00387	Histidine kinase-like ATPases
ATY45_15755	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_15780	SM00487	DEAD-like helicases superfamily
ATY45_15780	SM00490	helicase superfamily c-terminal domain
ATY45_15780	SM00982	ATY45_15780
ATY45_15780	SM01058	CarD-like/TRCF domain
ATY45_15790	SM00073	Histidine Phosphotransfer domain
ATY45_15790	SM00260	Two component signalling adaptor domain
ATY45_15790	SM00387	Histidine kinase-like ATPases
ATY45_15790	SM01231	ATY45_15790
ATY45_15795	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
ATY45_15795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATY45_15800	SM00260	Two component signalling adaptor domain
ATY45_15805	SM00052	Putative diguanylate phosphodiesterase
ATY45_15805	SM00448	cheY-homologous receiver domain
ATY45_15810	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_15815	SM00448	cheY-homologous receiver domain
ATY45_15835	SM00855	Phosphoglycerate mutase family
ATY45_15890	SM01126	ATY45_15890
ATY45_15970	SM01126	ATY45_15970
ATY45_15985	SM00829	Enoylreductase
ATY45_15990	SM00267	diguanylate cyclase
ATY45_16065	SM00732	Likely ribonuclease with RNase H fold.
ATY45_16110	SM00382	ATPases associated with a variety of cellular activities
ATY45_16130	SM00411	bacterial (prokaryotic) histone like domain
ATY45_16165	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
ATY45_16180	SM00382	ATPases associated with a variety of cellular activities
ATY45_16220	SM01126	ATY45_16220
ATY45_16240	SM01126	ATY45_16240
ATY45_16300	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_16305	SM00862	Transcriptional regulatory protein, C terminal
ATY45_16350	SM00382	ATPases associated with a variety of cellular activities
ATY45_16440	SM00855	Phosphoglycerate mutase family
ATY45_16510	SM00382	ATPases associated with a variety of cellular activities
ATY45_16510	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_16550	SM00363	S4 RNA-binding domain
ATY45_16595	SM00382	ATPases associated with a variety of cellular activities
ATY45_16595	SM00962	SRP54-type protein, GTPase domain
ATY45_16595	SM00963	SRP54-type protein, helical bundle domain
ATY45_16600	SM01126	ATY45_16600
ATY45_16615	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATY45_16750	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_16770	SM00382	ATPases associated with a variety of cellular activities
ATY45_16815	SM00924	MgtE intracellular N domain
ATY45_16850	SM00421	helix_turn_helix, Lux Regulon
ATY45_16875	SM00849	Metallo-beta-lactamase superfamily
ATY45_16885	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_16910	SM00422	helix_turn_helix, mercury resistance
ATY45_17205	SM00448	cheY-homologous receiver domain
ATY45_17205	SM00862	Transcriptional regulatory protein, C terminal
ATY45_17210	SM00387	Histidine kinase-like ATPases
ATY45_17210	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_17215	SM01126	ATY45_17215
ATY45_17230	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATY45_17275	SM00849	Metallo-beta-lactamase superfamily
ATY45_17290	SM00382	ATPases associated with a variety of cellular activities
ATY45_17310	SM00387	Histidine kinase-like ATPases
ATY45_17310	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_17315	SM00448	cheY-homologous receiver domain
ATY45_17315	SM00862	Transcriptional regulatory protein, C terminal
ATY45_17375	SM00861	Transketolase, pyrimidine binding domain
ATY45_17395	SM00028	Tetratricopeptide repeats
ATY45_17395	SM00327	von Willebrand factor (vWF) type A domain
ATY45_17400	SM00327	von Willebrand factor (vWF) type A domain
ATY45_17415	SM00382	ATPases associated with a variety of cellular activities
ATY45_17440	SM00965	Secretin and TonB N terminus short domain
ATY45_17495	SM00487	DEAD-like helicases superfamily
ATY45_17495	SM00490	helicase superfamily c-terminal domain
ATY45_17505	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATY45_17505	SM00954	Region found in RelA / SpoT proteins
ATY45_17510	SM01409	ATY45_17510
ATY45_17520	SM00072	Guanylate kinase homologues.
ATY45_17545	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_17570	SM01011	Aminopeptidase P, N-terminal domain
ATY45_17655	SM00919	Malic enzyme, NAD binding domain
ATY45_17655	SM01274	ATY45_17655
ATY45_17670	SM00387	Histidine kinase-like ATPases
ATY45_17670	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_17670	SM00448	cheY-homologous receiver domain
ATY45_17700	SM00421	helix_turn_helix, Lux Regulon
ATY45_17700	SM00448	cheY-homologous receiver domain
ATY45_17710	SM00387	Histidine kinase-like ATPases
ATY45_17710	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_17715	SM00448	cheY-homologous receiver domain
ATY45_17715	SM00862	Transcriptional regulatory protein, C terminal
ATY45_17730	SM00822	ATY45_17730
ATY45_17735	SM00354	helix_turn _helix lactose operon repressor
ATY45_17750	SM00642	Alpha-amylase domain
ATY45_17760	SM01154	ATY45_17760
ATY45_17790	SM00450	Rhodanese Homology Domain
ATY45_17845	SM00382	ATPases associated with a variety of cellular activities
ATY45_17855	SM00460	Transglutaminase/protease-like homologues
ATY45_17870	SM00493	ATY45_17870
ATY45_17880	SM00382	ATPases associated with a variety of cellular activities
ATY45_17910	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_17915	SM00849	Metallo-beta-lactamase superfamily
ATY45_17940	SM01126	ATY45_17940
ATY45_18005	SM00331	Sigma factor PP2C-like phosphatases
ATY45_18005	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATY45_18010	SM00479	ATY45_18010
ATY45_18025	SM00849	Metallo-beta-lactamase superfamily
ATY45_18030	SM00257	Lysin motif
ATY45_18055	SM00411	bacterial (prokaryotic) histone like domain
ATY45_18060	SM00382	ATPases associated with a variety of cellular activities
ATY45_18060	SM00464	Found in ATP-dependent protease La (LON)
ATY45_18065	SM00382	ATPases associated with a variety of cellular activities
ATY45_18065	SM00994	ClpX C4-type zinc finger
ATY45_18065	SM01086	C-terminal, D2-small domain, of ClpB protein
ATY45_18130	SM01329	ATY45_18130
ATY45_18135	SM01126	ATY45_18135
ATY45_18165	SM00448	cheY-homologous receiver domain
ATY45_18165	SM00862	Transcriptional regulatory protein, C terminal
ATY45_18170	SM00387	Histidine kinase-like ATPases
ATY45_18170	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_18190	SM00014	Acid phosphatase homologues
ATY45_18235	SM00855	Phosphoglycerate mutase family
ATY45_18255	SM00829	Enoylreductase
ATY45_18265	SM00382	ATPases associated with a variety of cellular activities
ATY45_18310	SM00829	Enoylreductase
ATY45_18365	SM01126	ATY45_18365
ATY45_18420	SM00838	Elongation factor G C-terminus
ATY45_18550	SM01126	ATY45_18550
ATY45_18595	SM00464	Found in ATP-dependent protease La (LON)
ATY45_18615	SM01126	ATY45_18615
ATY45_18625	SM01126	ATY45_18625
ATY45_18660	SM00342	helix_turn_helix, arabinose operon control protein
ATY45_18695	SM00917	LeuA allosteric (dimerisation) domain
ATY45_18700	SM01329	ATY45_18700
ATY45_18735	SM01126	ATY45_18735
ATY45_18810	SM00788	Adenylosuccinate synthetase
ATY45_18820	SM00244	prohibitin homologues
ATY45_18825	SM00244	prohibitin homologues
ATY45_18830	SM00448	cheY-homologous receiver domain
ATY45_18835	SM00271	DnaJ molecular chaperone homology domain
ATY45_18915	SM00382	ATPases associated with a variety of cellular activities
ATY45_18950	SM00825	Beta-ketoacyl synthase
ATY45_18960	SM00822	ATY45_18960
ATY45_18965	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATY45_18995	SM01126	ATY45_18995
ATY45_19000	SM00487	DEAD-like helicases superfamily
ATY45_19065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATY45_19065	SM00866	ATY45_19065
ATY45_19130	SM00382	ATPases associated with a variety of cellular activities
ATY45_19145	SM01211	ATY45_19145
ATY45_19230	SM00656	ATY45_19230
ATY45_19285	SM00528	Domain in histone-like proteins of HNS family
ATY45_19300	SM00382	ATPases associated with a variety of cellular activities
ATY45_19330	SM00882	Coenzyme A transferase
ATY45_19335	SM00882	Coenzyme A transferase
ATY45_19370	SM00893	Electron transfer flavoprotein domain
ATY45_19375	SM00893	Electron transfer flavoprotein domain
ATY45_19385	SM00382	ATPases associated with a variety of cellular activities
ATY45_19440	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_19475	SM00487	DEAD-like helicases superfamily
ATY45_19475	SM00490	helicase superfamily c-terminal domain
ATY45_19500	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_19525	SM00825	Beta-ketoacyl synthase
ATY45_19620	SM01126	ATY45_19620
ATY45_19645	SM00830	Chorismate mutase type II
ATY45_19655	SM00382	ATPases associated with a variety of cellular activities
ATY45_19725	SM00986	Uracil DNA glycosylase superfamily
ATY45_19725	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_19750	SM00382	ATPases associated with a variety of cellular activities
ATY45_19750	SM00930	ATY45_19750
ATY45_19820	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ATY45_19820	SM00091	PAS domain
ATY45_19820	SM00387	Histidine kinase-like ATPases
ATY45_19820	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_19820	SM00448	cheY-homologous receiver domain
ATY45_19840	SM01005	Alanine racemase, C-terminal domain
ATY45_19850	SM00344	helix_turn_helix ASNC type
ATY45_19890	SM00448	cheY-homologous receiver domain
ATY45_19890	SM00862	Transcriptional regulatory protein, C terminal
ATY45_19895	SM00387	Histidine kinase-like ATPases
ATY45_19895	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_19930	SM00382	ATPases associated with a variety of cellular activities
ATY45_19950	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATY45_19955	SM00986	Uracil DNA glycosylase superfamily
ATY45_19955	SM00987	UreE urease accessory protein, C-terminal domain 
ATY45_20020	SM00850	LytTr DNA-binding domain
ATY45_20025	SM00448	cheY-homologous receiver domain
ATY45_20030	SM00387	Histidine kinase-like ATPases
ATY45_20045	SM00138	Methyltransferase, chemotaxis proteins 
ATY45_20050	SM00448	cheY-homologous receiver domain
ATY45_20060	SM00382	ATPases associated with a variety of cellular activities
ATY45_20060	SM00448	cheY-homologous receiver domain
ATY45_20185	SM01126	ATY45_20185
ATY45_20240	SM00100	Cyclic nucleotide-monophosphate binding domain
ATY45_20240	SM00419	helix_turn_helix, cAMP Regulatory protein
ATY45_20260	SM00903	Flavin reductase like domain
ATY45_20495	SM00257	Lysin motif
ATY45_20520	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATY45_20520	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATY45_20520	SM00493	ATY45_20520
ATY45_20575	SM00487	DEAD-like helicases superfamily
ATY45_20575	SM00490	helicase superfamily c-terminal domain
ATY45_20590	SM01126	ATY45_20590
ATY45_20625	SM00878	Biotin carboxylase C-terminal domain
ATY45_20650	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_20665	SM01126	ATY45_20665
ATY45_20730	SM01126	ATY45_20730
ATY45_20760	SM00798	AICARFT/IMPCHase bienzyme
ATY45_20760	SM00851	MGS-like domain
ATY45_20770	SM01209	ATY45_20770
ATY45_20770	SM01210	ATY45_20770
ATY45_20800	SM00563	Phosphate acyltransferases
ATY45_20870	SM00052	Putative diguanylate phosphodiesterase
ATY45_20870	SM00267	diguanylate cyclase
ATY45_20870	SM00448	cheY-homologous receiver domain
ATY45_20875	SM00073	Histidine Phosphotransfer domain
ATY45_20875	SM00387	Histidine kinase-like ATPases
ATY45_20875	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_20875	SM00448	cheY-homologous receiver domain
ATY45_20960	SM00470	ParB-like nuclease domain
ATY45_20980	SM01259	ATY45_20980
ATY45_21010	SM00836	DALR anticodon binding domain
ATY45_21010	SM01016	Arginyl tRNA synthetase N terminal dom
ATY45_21035	SM00090	RIO-like kinase
ATY45_21060	SM00998	Adenylosuccinate lyase C-terminus
ATY45_21130	SM00881	CoA binding domain
ATY45_21140	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATY45_21140	SM00924	MgtE intracellular N domain
ATY45_21170	SM00226	Low molecular weight phosphatase family
ATY45_21175	SM00248	ankyrin repeats
ATY45_21185	SM00825	Beta-ketoacyl synthase
ATY45_21210	SM00822	ATY45_21210
ATY45_21225	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_21225	SM00876	Biotin and Thiamin Synthesis associated domain
ATY45_21270	SM01060	ATY45_21270
ATY45_21315	SM00849	Metallo-beta-lactamase superfamily
ATY45_21405	SM00387	Histidine kinase-like ATPases
ATY45_21405	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_21410	SM00448	cheY-homologous receiver domain
ATY45_21410	SM00862	Transcriptional regulatory protein, C terminal
ATY45_21435	SM00248	ankyrin repeats
ATY45_21440	SM01060	ATY45_21440
ATY45_21455	SM01126	ATY45_21455
ATY45_21465	SM00491	ATY45_21465
ATY45_21490	SM00477	DNA/RNA non-specific endonuclease
ATY45_21490	SM00892	DNA/RNA non-specific endonuclease
ATY45_21505	SM01004	Delta-aminolevulinic acid dehydratase
ATY45_21545	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATY45_21565	SM00382	ATPases associated with a variety of cellular activities
ATY45_21575	SM00530	Helix-turn-helix XRE-family like proteins 
ATY45_21600	SM00382	ATPases associated with a variety of cellular activities
ATY45_21650	SM01126	ATY45_21650
ATY45_21740	SM00563	Phosphate acyltransferases
ATY45_21760	SM01126	ATY45_21760
ATY45_21790	SM00346	helix_turn_helix isocitrate lyase regulation
ATY45_21810	SM00091	PAS domain
ATY45_21810	SM00387	Histidine kinase-like ATPases
ATY45_21810	SM00388	His Kinase A (phosphoacceptor) domain
ATY45_21810	SM00448	cheY-homologous receiver domain
ATY45_21840	SM00564	beta-propeller repeat
ATY45_21895	SM01126	ATY45_21895
ATY45_21930	SM01126	ATY45_21930
ATY45_21945	SM00382	ATPases associated with a variety of cellular activities
ATY45_21995	SM01126	ATY45_21995
ATY45_22000	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATY45_22000	SM01232	ATY45_22000
ATY45_22055	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATY45_22055	SM00091	PAS domain
ATY45_22105	SM00829	Enoylreductase
ATY45_22175	SM00344	helix_turn_helix ASNC type
ATY45_22225	SM00829	Enoylreductase
ATY45_22255	SM00487	DEAD-like helicases superfamily
ATY45_22255	SM00490	helicase superfamily c-terminal domain
ATY45_22255	SM00847	Helicase associated domain (HA2)  Add an annotation
ATY45_22265	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATY45_22315	SM00421	helix_turn_helix, Lux Regulon
ATY45_22315	SM00448	cheY-homologous receiver domain
ATY45_22430	SM00155	Phospholipase D. Active site motifs.
ATY45_22455	SM01126	ATY45_22455
ATY45_22495	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATY45_22525	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATY45_22525	SM00245	tail specific protease
ATY45_22735	SM00014	Acid phosphatase homologues
ATY45_22745	SM00028	Tetratricopeptide repeats
