locus-tag	class	description
ATY46_00020	COG0187	DNA topoisomerase II activity
ATY46_00030	COG0501	Belongs to the peptidase M48B family
ATY46_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY46_00090	COG4772	TonB-dependent receptor
ATY46_00100	COG3039	Transposase
ATY46_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY46_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY46_00145	COG3039	Transposase
ATY46_00155	COG1116	anion transmembrane transporter activity
ATY46_00175	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY46_00195	COG3039	Transposase
ATY46_00205	COG0513	Belongs to the DEAD box helicase family
ATY46_00240	COG3039	Transposase
ATY46_00290	COG1858	cytochrome C peroxidase
ATY46_00295	COG0702	epimerase
ATY46_00320	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY46_00335	COG3706	GGDEF domain
ATY46_00335	COG0745	RESPONSE REGULATOR receiver
ATY46_00345	COG2354	Protein conserved in bacteria
ATY46_00350	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY46_00360	COG3293	Transposase
ATY46_00370	COG1511	domain protein
ATY46_00370	COG3264	Mechanosensitive ion channel
ATY46_00450	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY46_00545	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY46_00555	COG0642	Histidine kinase
ATY46_00560	COG1090	epimerase
ATY46_00570	COG3039	Transposase
ATY46_00595	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_00640	COG1136	(ABC) transporter
ATY46_00655	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_00680	COG1272	protein, Hemolysin III
ATY46_00685	COG1111	helicase
ATY46_00685	COG1205	dead DEAH box helicase
ATY46_00740	COG0069	glutamate synthase activity
ATY46_00740	COG0067	glutamate synthase
ATY46_00740	COG0070	glutamate synthase
ATY46_00745	COG0493	'glutamate synthase
ATY46_00765	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_00785	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY46_00790	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY46_00795	COG1609	Transcriptional regulator
ATY46_00820	COG0366	Alpha amylase catalytic
ATY46_00825	COG0366	Alpha amylase catalytic
ATY46_00830	COG2801	Transposase and inactivated derivatives
ATY46_00845	COG3328	transposase activity
ATY46_00875	COG0606	chelatase, subunit chli
ATY46_00910	COG1166	arginine decarboxylase activity
ATY46_00925	COG3501	Rhs element vgr protein
ATY46_01000	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_01025	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY46_01040	COG0210	DNA helicase
ATY46_01055	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY46_01090	COG2937	Belongs to the GPAT DAPAT family
ATY46_01110	COG2963	transposase activity
ATY46_01125	COG2755	lipolytic protein G-D-S-L family
ATY46_01135	COG3186	Phenylalanine-4-hydroxylase
ATY46_01140	COG1522	sequence-specific DNA binding
ATY46_01155	COG4773	Receptor
ATY46_01195	COG1064	alcohol dehydrogenase
ATY46_01200	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY46_01205	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY46_01210	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY46_01215	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_01235	COG3039	Transposase
ATY46_01240	COG0676	glucose-6-phosphate 1-epimerase activity
ATY46_01260	COG3135	benzoate transporter
ATY46_01265	COG3135	benzoate transporter
ATY46_01300	COG2963	transposase activity
ATY46_01320	COG3293	Transposase
ATY46_01355	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY46_01360	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY46_01365	COG1127	ABC transporter
ATY46_01395	COG3293	Transposase
ATY46_01425	COG2801	Transposase and inactivated derivatives
ATY46_01430	COG2963	transposase activity
ATY46_01450	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY46_01455	COG3293	Transposase
ATY46_01465	COG3265	gluconokinase activity
ATY46_01470	COG2211	Major facilitator Superfamily
ATY46_01475	COG3459	Glycosyltransferase 36 associated
ATY46_01490	COG2205	protein histidine kinase activity
ATY46_01500	COG1414	Transcriptional regulator
ATY46_01505	COG0738	Major facilitator superfamily
ATY46_01510	COG3254	rhamnose metabolic process
ATY46_01535	COG0339	signal peptide processing
ATY46_01560	COG0564	pseudouridine synthase activity
ATY46_01615	COG3293	Transposase
ATY46_01620	COG2963	transposase activity
ATY46_01665	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY46_01675	COG0842	Transport permease protein
ATY46_01680	COG1131	(ABC) transporter
ATY46_01685	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY46_01705	COG1476	TRANSCRIPTIONal
ATY46_01715	COG4555	ABC transporter
ATY46_01750	COG0625	glutathione transferase activity
ATY46_01785	COG0583	DNA-binding transcription factor activity
ATY46_01815	COG1199	ATP-dependent helicase activity
ATY46_01835	COG1566	PFAM secretion protein HlyD family protein
ATY46_01860	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY46_01870	COG0745	RESPONSE REGULATOR receiver
ATY46_01875	COG2205	protein histidine kinase activity
ATY46_01900	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY46_01900	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY46_01955	COG3237	CsbD-like
ATY46_01960	COG0180	Tryptophanyl-tRNA synthetase
ATY46_01965	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY46_02010	COG0753	catalase activity
ATY46_02015	COG1595	DNA-templated transcription, initiation
ATY46_02025	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY46_02035	COG0628	permease
ATY46_02050	COG1040	competence protein
ATY46_02070	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_02085	COG0463	Glycosyl transferase, family 2
ATY46_02095	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY46_02100	COG3100	YcgL domain-containing protein
ATY46_02115	COG3387	PFAM Glycoside hydrolase 15-related
ATY46_02120	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY46_02135	COG2239	Acts as a magnesium transporter
ATY46_02145	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY46_02145	COG1042	CoA-binding domain protein
ATY46_02145	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY46_02155	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY46_02160	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY46_02180	COG2963	transposase activity
ATY46_02200	COG3485	protocatechuate 3,4-dioxygenase
ATY46_02205	COG3485	protocatechuate 3,4-dioxygenase
ATY46_02210	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY46_02215	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY46_02220	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY46_02230	COG1414	Transcriptional regulator
ATY46_02240	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_02245	COG4221	oxidoreductase activity
ATY46_02260	COG0018	arginyl-trna synthetase
ATY46_02265	COG2003	Belongs to the UPF0758 family
ATY46_02295	COG0463	Glycosyl transferase, family 2
ATY46_02310	COG1475	DNA binding
ATY46_02315	COG1192	Involved in chromosome partitioning
ATY46_02330	COG0708	Exodeoxyribonuclease III
ATY46_02335	COG2211	Major facilitator Superfamily
ATY46_02350	COG0739	heme binding
ATY46_02390	COG2963	transposase activity
ATY46_02425	COG3293	Transposase
ATY46_02450	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY46_02470	COG2814	Major facilitator Superfamily
ATY46_02485	COG1289	transmembrane transporter activity
ATY46_02495	COG1136	(ABC) transporter
ATY46_02495	COG0577	efflux transmembrane transporter activity
ATY46_02500	COG0151	Belongs to the GarS family
ATY46_02520	COG2267	carboxylic ester hydrolase activity
ATY46_02530	COG2267	carboxylic ester hydrolase activity
ATY46_02535	COG2453	phosphatase
ATY46_02535	COG0671	phosphoesterase, PA-phosphatase related
ATY46_02545	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY46_02580	COG0439	Biotin carboxylase
ATY46_02590	COG0511	ligase activity, forming carbon-carbon bonds
ATY46_02610	COG1324	tolerance protein
ATY46_02630	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY46_02655	COG0534	Mate efflux family protein
ATY46_02660	COG0616	signal peptide processing
ATY46_02670	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_02690	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY46_02690	COG1754	DNA topoisomerase type I activity
ATY46_02710	COG0758	DNA mediated transformation
ATY46_02715	COG1652	LysM domain
ATY46_02720	COG0242	peptide deformylase activity
ATY46_02730	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY46_02730	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY46_02775	COG1560	Kdo2-lipid A biosynthetic process
ATY46_02785	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY46_02995	COG1294	oxidase, subunit
ATY46_03000	COG1271	oxidase subunit
ATY46_03005	COG2204	response regulator
ATY46_03040	COG2972	Histidine kinase
ATY46_03045	COG3279	Response regulator of the LytR AlgR family
ATY46_03050	COG3279	Response regulator of the LytR AlgR family
ATY46_03060	COG0531	amino acid
ATY46_03090	COG0667	Aldo Keto reductase
ATY46_03105	COG3384	dioxygenase
ATY46_03115	COG1573	uracil-dna glycosylase
ATY46_03120	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY46_03135	COG0025	NhaP-type Na H and K H
ATY46_03140	COG1131	(ABC) transporter
ATY46_03145	COG0842	Transport permease protein
ATY46_03165	COG1404	Belongs to the peptidase S8 family
ATY46_03180	COG0745	RESPONSE REGULATOR receiver
ATY46_03220	COG1522	sequence-specific DNA binding
ATY46_03225	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY46_03250	COG2205	protein histidine kinase activity
ATY46_03250	COG2202	Pas domain
ATY46_03275	COG2813	Specifically methylates the guanine in position
ATY46_03280	COG1187	pseudouridine synthase activity
ATY46_03285	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY46_03320	COG0697	spore germination
ATY46_03330	COG2011	ABC-type metal ion transport system permease component
ATY46_03360	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY46_03370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY46_03390	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY46_03425	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ATY46_03475	COG3842	ATPase activity
ATY46_03480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY46_03485	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY46_03500	COG3293	Transposase
ATY46_03540	COG0339	signal peptide processing
ATY46_03575	COG1956	GAF domain-containing protein
ATY46_03590	COG0720	synthase
ATY46_03600	COG0513	Belongs to the DEAD box helicase family
ATY46_03640	COG0626	cystathionine gamma-synthase activity
ATY46_03675	COG3328	transposase activity
ATY46_03700	COG2086	electron transfer activity
ATY46_03725	COG0662	Cupin 2, conserved barrel domain protein
ATY46_03725	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY46_03730	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY46_03765	COG3218	ABC-type transport auxiliary lipoprotein component
ATY46_03765	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY46_03770	COG1127	ABC transporter
ATY46_03775	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY46_03800	COG1183	phosphatidylcholine synthase activity
ATY46_03825	COG3039	Transposase
ATY46_03860	COG2801	Transposase and inactivated derivatives
ATY46_03865	COG2963	transposase activity
ATY46_03875	COG0525	valine-tRNA ligase activity
ATY46_03900	COG0795	lipopolysaccharide-transporting ATPase activity
ATY46_03910	COG4974	Belongs to the 'phage' integrase family
ATY46_03915	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY46_03925	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY46_03925	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY46_03930	COG5295	Hep Hag repeat protein
ATY46_03950	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY46_03960	COG1459	type II secretion system
ATY46_03965	COG2165	general secretion pathway protein
ATY46_03970	COG4970	Tfp pilus assembly protein FimT
ATY46_03975	COG2165	general secretion pathway protein
ATY46_03980	COG4795	General secretion pathway protein
ATY46_03985	COG3156	type II secretion system protein K
ATY46_03990	COG3166	PFAM Fimbrial assembly family protein
ATY46_04005	COG1450	Type ii and iii secretion system protein
ATY46_04015	COG2188	Transcriptional regulator
ATY46_04050	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY46_04055	COG1518	maintenance of DNA repeat elements
ATY46_04095	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY46_04120	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_04135	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY46_04140	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY46_04165	COG3829	transcription factor binding
ATY46_04190	COG3039	Transposase
ATY46_04230	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_04240	COG0678	peroxiredoxin activity
ATY46_04260	COG0330	HflC and HflK could
ATY46_04265	COG0330	HflC and HflK could
ATY46_04280	COG0308	aminopeptidase N
ATY46_04305	COG3039	Transposase
ATY46_04325	COG1560	Kdo2-lipid A biosynthetic process
ATY46_04330	COG1519	Transferase
ATY46_04335	COG1538	Outer membrane efflux protein
ATY46_04340	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY46_04420	COG3710	Transcriptional regulator
ATY46_04440	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY46_04480	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY46_04490	COG3781	membrane
ATY46_04505	COG0625	glutathione transferase activity
ATY46_04515	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY46_04540	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY46_04560	COG2963	transposase activity
ATY46_04565	COG2801	Transposase and inactivated derivatives
ATY46_04610	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_04640	COG2963	transposase activity
ATY46_04670	COG3293	Transposase
ATY46_04690	COG3039	Transposase
ATY46_04710	COG3293	Transposase
ATY46_04715	COG0584	glycerophosphoryl diester phosphodiesterase
ATY46_04745	COG0473	3-isopropylmalate dehydrogenase activity
ATY46_04775	COG2963	transposase activity
ATY46_04800	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY46_04805	COG0740	serine-type endopeptidase activity
ATY46_04840	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY46_04865	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY46_04870	COG0631	protein serine/threonine phosphatase activity
ATY46_04895	COG3501	Rhs element vgr protein
ATY46_04935	COG0582	viral genome integration into host DNA
ATY46_04945	COG0859	PFAM glycosyl transferase family 9
ATY46_04955	COG1234	tRNA 3'-trailer cleavage
ATY46_04960	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY46_04975	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY46_04980	COG0314	molybdopterin synthase activity
ATY46_05005	COG0537	adenosine 5'-monophosphoramidase activity
ATY46_05025	COG0714	Associated with various cellular activities
ATY46_05045	COG0242	peptide deformylase activity
ATY46_05080	COG3039	Transposase
ATY46_05100	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY46_05105	COG0726	polysaccharide deacetylase
ATY46_05150	COG2211	Major facilitator Superfamily
ATY46_05155	COG1609	Transcriptional regulator
ATY46_05160	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_05165	COG2851	Citrate transporter
ATY46_05180	COG0642	Histidine kinase
ATY46_05185	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY46_05190	COG2197	response regulator
ATY46_05215	COG0583	DNA-binding transcription factor activity
ATY46_05230	COG4191	Histidine kinase
ATY46_05245	COG0280	phosphate acetyltransferase
ATY46_05245	COG0281	malic enzyme
ATY46_05255	COG2963	transposase activity
ATY46_05260	COG2801	Transposase and inactivated derivatives
ATY46_05285	COG0352	thiamine-phosphate diphosphorylase activity
ATY46_05290	COG1773	rubredoxin
ATY46_05295	COG2912	Transglutaminase-like superfamily
ATY46_05315	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY46_05335	COG0006	proline dipeptidase activity
ATY46_05350	COG3293	Transposase
ATY46_05370	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY46_05390	COG1561	YicC-like family, N-terminal region
ATY46_05410	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY46_05420	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY46_05430	COG0254	rRNA binding
ATY46_05450	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY46_05495	COG0714	Associated with various cellular activities
ATY46_05515	COG2304	oxidoreductase activity
ATY46_05530	COG1301	dicarboxylic acid transport
ATY46_05535	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY46_05540	COG4773	Receptor
ATY46_05545	COG0739	heme binding
ATY46_05550	COG1376	ErfK ybiS ycfS ynhG family protein
ATY46_05585	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_05595	COG0745	RESPONSE REGULATOR receiver
ATY46_05600	COG0642	Histidine kinase
ATY46_05620	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY46_05625	COG4149	molybdate abc transporter
ATY46_05630	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY46_05635	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY46_05635	COG3453	Protein conserved in bacteria
ATY46_05670	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY46_05675	COG3293	Transposase
ATY46_05690	COG2205	protein histidine kinase activity
ATY46_05695	COG0745	RESPONSE REGULATOR receiver
ATY46_05745	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY46_05750	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY46_05785	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY46_05805	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY46_05875	COG2201	protein-glutamate methylesterase activity
ATY46_05925	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY46_05935	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY46_05955	COG1842	Phage shock protein A
ATY46_05980	COG0754	glutathionylspermidine amidase activity
ATY46_06005	COG0789	Transcriptional regulator
ATY46_06060	COG0531	amino acid
ATY46_06065	COG2197	response regulator
ATY46_06075	COG1113	amino acid transport
ATY46_06085	COG1271	oxidase subunit
ATY46_06090	COG1294	oxidase, subunit
ATY46_06100	COG2239	Acts as a magnesium transporter
ATY46_06105	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY46_06110	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY46_06130	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY46_06145	COG1137	ATPase activity
ATY46_06150	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY46_06160	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY46_06170	COG0271	Belongs to the BolA IbaG family
ATY46_06195	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY46_06220	COG0628	permease
ATY46_06230	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY46_06235	COG3178	'Phosphotransferase
ATY46_06255	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY46_06260	COG1555	photosystem II stabilization
ATY46_06315	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY46_06325	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY46_06365	COG0534	Mate efflux family protein
ATY46_06385	COG4206	TonB-dependent receptor
ATY46_06400	COG2963	transposase activity
ATY46_06415	COG0542	response to heat
ATY46_06475	COG0019	diaminopimelate decarboxylase activity
ATY46_06485	COG2814	Major facilitator Superfamily
ATY46_06490	COG4264	IucA IucC family
ATY46_06500	COG4772	TonB-dependent receptor
ATY46_06510	COG2801	Transposase and inactivated derivatives
ATY46_06515	COG4651	solute:proton antiporter activity
ATY46_06515	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY46_06545	COG0488	(ABC) transporter
ATY46_06570	COG2755	lipolytic protein G-D-S-L family
ATY46_06570	COG0657	acetylesterase activity
ATY46_06595	COG2207	Transcriptional regulator
ATY46_06600	COG0326	Molecular chaperone. Has ATPase activity
ATY46_06620	COG2963	transposase activity
ATY46_06660	COG2801	Transposase and inactivated derivatives
ATY46_06665	COG2963	transposase activity
ATY46_06670	COG3039	Transposase
ATY46_06685	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY46_06690	COG0719	Fe-S assembly protein
ATY46_06695	COG0396	ATPase activity
ATY46_06700	COG0719	Fe-S assembly protein
ATY46_06705	COG1959	2 iron, 2 sulfur cluster binding
ATY46_06760	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY46_06785	COG0519	Catalyzes the synthesis of GMP from XMP
ATY46_06815	COG1764	response to oxidative stress
ATY46_06825	COG0384	phenazine biosynthesis protein PhzF
ATY46_06830	COG0384	phenazine biosynthesis protein PhzF
ATY46_06840	COG0527	aspartate kinase activity
ATY46_06870	COG0142	geranyltranstransferase activity
ATY46_06875	COG0629	single-stranded DNA binding
ATY46_06880	COG3706	GGDEF domain
ATY46_06880	COG5001	Diguanylate cyclase
ATY46_06880	COG4251	negative regulation of phosphorylation
ATY46_06880	COG2203	Gaf domain
ATY46_06885	COG3321	synthase
ATY46_06885	COG0604	alcohol dehydrogenase
ATY46_06885	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_06910	COG2879	small protein
ATY46_06915	COG1966	Carbon starvation protein
ATY46_06920	COG1741	Belongs to the pirin family
ATY46_06930	COG3501	Rhs element vgr protein
ATY46_06955	COG3501	Rhs element vgr protein
ATY46_06995	COG1741	Belongs to the pirin family
ATY46_07005	COG1515	deoxyribonuclease V activity
ATY46_07020	COG3590	peptidase
ATY46_07035	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY46_07040	COG2202	Pas domain
ATY46_07040	COG2200	EAL domain
ATY46_07040	COG2199	diguanylate cyclase activity
ATY46_07045	COG0835	chemotaxis
ATY46_07050	COG0840	transmembrane signaling receptor activity
ATY46_07055	COG0643	Histidine kinase
ATY46_07055	COG2198	Histidine kinase
ATY46_07065	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY46_07075	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY46_07085	COG2205	protein histidine kinase activity
ATY46_07110	COG3039	Transposase
ATY46_07130	COG3039	Transposase
ATY46_07165	COG0735	belongs to the Fur family
ATY46_07205	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY46_07210	COG0084	hydrolase, TatD family'
ATY46_07225	COG1960	acyl-CoA dehydrogenase activity
ATY46_07255	COG0367	asparagine synthase
ATY46_07265	COG0305	Participates in initiation and elongation during chromosome replication
ATY46_07270	COG0415	Belongs to the DNA photolyase family
ATY46_07390	COG5002	protein histidine kinase activity
ATY46_07390	COG5001	Diguanylate cyclase
ATY46_07395	COG1187	pseudouridine synthase activity
ATY46_07420	COG0475	glutathione-regulated potassium exporter activity
ATY46_07425	COG5002	protein histidine kinase activity
ATY46_07425	COG5000	phosphorelay sensor kinase activity
ATY46_07430	COG0745	RESPONSE REGULATOR receiver
ATY46_07460	COG1132	(ABC) transporter
ATY46_07470	COG3293	Transposase
ATY46_07480	COG3039	Transposase
ATY46_07490	COG3039	Transposase
ATY46_07500	COG3039	Transposase
ATY46_07525	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY46_07535	COG4969	Belongs to the N-Me-Phe pilin family
ATY46_07540	COG2194	sulfuric ester hydrolase activity
ATY46_07560	COG2184	nucleotidyltransferase activity
ATY46_07580	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY46_07590	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY46_07590	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY46_07595	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY46_07600	COG0564	pseudouridine synthase activity
ATY46_07625	COG3387	PFAM Glycoside hydrolase 15-related
ATY46_07630	COG1877	trehalose-phosphatase activity
ATY46_07685	COG1595	DNA-templated transcription, initiation
ATY46_07695	COG1946	Acyl-CoA thioesterase
ATY46_07710	COG0824	Thioesterase
ATY46_07715	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY46_07735	COG0268	Binds directly to 16S ribosomal RNA
ATY46_07740	COG0728	peptidoglycan biosynthetic process
ATY46_07745	COG0196	riboflavin kinase activity
ATY46_07775	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY46_07780	COG1845	cytochrome c oxidase, subunit III
ATY46_07785	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY46_07820	COG2963	transposase activity
ATY46_07850	COG2801	Transposase and inactivated derivatives
ATY46_07855	COG2963	transposase activity
ATY46_07875	COG2963	transposase activity
ATY46_07955	COG0824	Thioesterase
ATY46_07965	COG0848	biopolymer transport protein
ATY46_07980	COG2885	chlorophyll binding
ATY46_07990	COG0602	queuosine metabolic process
ATY46_07995	COG1187	pseudouridine synthase activity
ATY46_08040	COG3293	Transposase
ATY46_08210	COG3179	chitinase
ATY46_08255	COG4695	Portal protein
ATY46_08290	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ATY46_08305	COG0514	ATP-dependent DNA helicase (RecQ)
ATY46_08310	COG0783	Belongs to the Dps family
ATY46_08315	COG1643	Atp-dependent helicase
ATY46_08325	COG0837	glucose binding
ATY46_08330	COG0837	glucose binding
ATY46_08335	COG0837	glucose binding
ATY46_08345	COG3293	Transposase
ATY46_08380	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY46_08395	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY46_08405	COG1199	ATP-dependent helicase activity
ATY46_08415	COG1397	ADP-ribosylglycohydrolase
ATY46_08425	COG0189	ligase activity
ATY46_08440	COG0835	chemotaxis
ATY46_08445	COG0840	transmembrane signaling receptor activity
ATY46_08480	COG2304	oxidoreductase activity
ATY46_08495	COG1446	asparaginase
ATY46_08500	COG3142	Participates in the control of copper homeostasis
ATY46_08550	COG3537	Alpha-1,2-mannosidase
ATY46_08580	COG3039	Transposase
ATY46_08615	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY46_08625	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY46_08630	COG1388	LysM domain
ATY46_08630	COG3858	chitin binding
ATY46_08645	COG0837	glucose binding
ATY46_08650	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY46_08660	COG0494	nUDIX hydrolase
ATY46_08670	COG3956	TIGRFAM MazG family protein
ATY46_08680	COG0330	HflC and HflK could
ATY46_08720	COG1960	acyl-CoA dehydrogenase activity
ATY46_08730	COG1309	transcriptional regulator
ATY46_08735	COG4771	TonB-dependent receptor
ATY46_08745	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY46_08760	COG0516	GMP reductase activity
ATY46_08760	COG0517	IMP dehydrogenase activity
ATY46_08770	COG1272	protein, Hemolysin III
ATY46_08780	COG0739	heme binding
ATY46_08785	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY46_08790	COG0626	cystathionine gamma-synthase activity
ATY46_08800	COG1760	l-serine dehydratase
ATY46_08810	COG2353	YceI-like domain
ATY46_08820	COG2353	YceI-like domain
ATY46_08870	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY46_08895	COG1960	acyl-CoA dehydrogenase activity
ATY46_08900	COG1024	Enoyl-CoA hydratase
ATY46_08920	COG1024	Enoyl-CoA hydratase
ATY46_08920	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY46_08935	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY46_08995	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY46_09005	COG3039	Transposase
ATY46_09015	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY46_09030	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY46_09035	COG1278	Cold shock
ATY46_09060	COG1201	RNA secondary structure unwinding
ATY46_09065	COG1793	dna ligase
ATY46_09075	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY46_09075	COG1793	dna ligase
ATY46_09090	COG3706	GGDEF domain
ATY46_09090	COG0745	RESPONSE REGULATOR receiver
ATY46_09105	COG0183	Belongs to the thiolase family
ATY46_09120	COG1451	nucleotide metabolic process
ATY46_09130	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY46_09165	COG1047	Peptidyl-prolyl cis-trans
ATY46_09180	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY46_09190	COG1902	pentaerythritol trinitrate reductase activity
ATY46_09195	COG2814	Major facilitator Superfamily
ATY46_09245	COG0392	lysyltransferase activity
ATY46_09245	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY46_09255	COG0251	oxidation-reduction process
ATY46_09260	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY46_09275	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY46_09300	COG1595	DNA-templated transcription, initiation
ATY46_09320	COG2878	Part of a membrane complex involved in electron transport
ATY46_09350	COG0833	amino acid
ATY46_09355	COG2040	homocysteine
ATY46_09365	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY46_09455	COG1131	(ABC) transporter
ATY46_09460	COG4771	TonB-dependent receptor
ATY46_09510	COG0750	zinc metalloprotease
ATY46_09520	COG0575	Belongs to the CDS family
ATY46_09585	COG0024	Methionine aminopeptidase
ATY46_09605	COG1393	Belongs to the ArsC family
ATY46_09620	COG0367	asparagine synthase
ATY46_09635	COG4774	siderophore transport
ATY46_09670	COG1566	PFAM secretion protein HlyD family protein
ATY46_09675	COG2814	Major facilitator Superfamily
ATY46_09710	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_09730	COG3039	Transposase
ATY46_09745	COG1960	acyl-CoA dehydrogenase activity
ATY46_09775	COG2914	Belongs to the UPF0125 (RnfH) family
ATY46_09780	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY46_09790	COG0497	DNA recombination
ATY46_09815	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY46_09820	COG1605	Chorismate mutase
ATY46_09820	COG0287	Prephenate dehydrogenase
ATY46_09835	COG0583	DNA-binding transcription factor activity
ATY46_09840	COG1132	(ABC) transporter
ATY46_09875	COG2850	peptidyl-arginine hydroxylation
ATY46_09910	COG3293	Transposase
ATY46_09920	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_09960	COG1131	(ABC) transporter
ATY46_09965	COG1725	Transcriptional regulator
ATY46_09975	COG0386	Belongs to the glutathione peroxidase family
ATY46_10015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY46_10025	COG1410	methionine synthase
ATY46_10025	COG0646	methionine synthase
ATY46_10030	COG0646	methionine synthase
ATY46_10030	COG1410	methionine synthase
ATY46_10040	COG1960	acyl-CoA dehydrogenase activity
ATY46_10060	COG0557	exoribonuclease II activity
ATY46_10080	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY46_10090	COG3039	Transposase
ATY46_10105	COG3328	transposase activity
ATY46_10115	COG1278	Cold shock
ATY46_10130	COG3039	Transposase
ATY46_10135	COG3039	Transposase
ATY46_10180	COG3039	Transposase
ATY46_10195	COG2801	Transposase and inactivated derivatives
ATY46_10200	COG2963	transposase activity
ATY46_10230	COG3039	Transposase
ATY46_10240	COG0583	DNA-binding transcription factor activity
ATY46_10325	COG0531	amino acid
ATY46_10330	COG0531	amino acid
ATY46_10340	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY46_10345	COG0277	FAD linked oxidase domain protein
ATY46_10410	COG0436	Aminotransferase
ATY46_10440	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY46_10445	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY46_10450	COG2350	Protein conserved in bacteria
ATY46_10480	COG1175	transmembrane transport
ATY46_10485	COG0395	ABC-type sugar transport system, permease component
ATY46_10505	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY46_10510	COG2957	Belongs to the agmatine deiminase family
ATY46_10520	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY46_10530	COG0539	negative regulation of cytoplasmic translation
ATY46_10545	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY46_10550	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY46_10560	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY46_10565	COG0475	glutathione-regulated potassium exporter activity
ATY46_10565	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY46_10620	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY46_10625	COG0583	DNA-binding transcription factor activity
ATY46_10645	COG0583	DNA-binding transcription factor activity
ATY46_10660	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY46_10665	COG1321	iron dependent repressor
ATY46_10670	COG0590	tRNA wobble adenosine to inosine editing
ATY46_10680	COG0668	transmembrane transport
ATY46_10720	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_10725	COG1183	phosphatidylcholine synthase activity
ATY46_10735	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY46_10750	COG0723	plastoquinol--plastocyanin reductase activity
ATY46_10750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY46_10760	COG2183	response to ionizing radiation
ATY46_10770	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY46_10785	COG0671	phosphoesterase, PA-phosphatase related
ATY46_10805	COG1794	racemase activity, acting on amino acids and derivatives
ATY46_10810	COG0697	spore germination
ATY46_10815	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ATY46_10835	COG1012	belongs to the aldehyde dehydrogenase family
ATY46_10870	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY46_10885	COG0124	histidyl-tRNA synthetase
ATY46_10935	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY46_10935	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY46_11150	COG3293	Transposase
ATY46_11160	COG3039	Transposase
ATY46_11175	COG3293	Transposase
ATY46_11205	COG3293	Transposase
ATY46_11255	COG3039	Transposase
ATY46_11270	COG3328	transposase activity
ATY46_11315	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY46_11340	COG0811	peptide transport
ATY46_11365	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY46_11380	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY46_11395	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY46_11405	COG0354	folic acid binding
ATY46_11415	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY46_11425	COG0363	glucosamine-6-phosphate deaminase activity
ATY46_11430	COG0129	dihydroxy-acid dehydratase activity
ATY46_11435	COG0800	Aldolase
ATY46_11470	COG0784	Response regulator, receiver
ATY46_11470	COG2205	protein histidine kinase activity
ATY46_11470	COG5002	protein histidine kinase activity
ATY46_11480	COG3293	Transposase
ATY46_11500	COG3706	GGDEF domain
ATY46_11555	COG0386	Belongs to the glutathione peroxidase family
ATY46_11640	COG3706	GGDEF domain
ATY46_11640	COG5001	Diguanylate cyclase
ATY46_11640	COG2203	Gaf domain
ATY46_11640	COG4251	negative regulation of phosphorylation
ATY46_11650	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY46_11680	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ATY46_11695	COG0617	tRNA 3'-terminal CCA addition
ATY46_11710	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY46_11725	COG2963	transposase activity
ATY46_11765	COG4566	intracellular signal transduction
ATY46_11775	COG2963	transposase activity
ATY46_11790	COG0077	Prephenate dehydratase
ATY46_11790	COG1605	Chorismate mutase
ATY46_11800	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY46_11850	COG2986	histidine ammonia-lyase
ATY46_11860	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY46_11880	COG2963	transposase activity
ATY46_11900	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY46_11915	COG3115	cell septum assembly
ATY46_11940	COG0316	Belongs to the HesB IscA family
ATY46_11975	COG0288	reversible hydration of carbon dioxide
ATY46_12000	COG2925	Exonuclease
ATY46_12010	COG0667	Aldo Keto reductase
ATY46_12040	COG0488	(ABC) transporter
ATY46_12045	COG4133	protoheme IX ABC transporter activity
ATY46_12050	COG0488	(ABC) transporter
ATY46_12085	COG0494	nUDIX hydrolase
ATY46_12095	COG1024	Enoyl-CoA hydratase
ATY46_12105	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY46_12120	COG3039	Transposase
ATY46_12135	COG3293	Transposase
ATY46_12155	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY46_12160	COG0573	inorganic phosphate transmembrane transporter activity
ATY46_12175	COG0704	Plays a role in the regulation of phosphate uptake
ATY46_12185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY46_12200	COG3328	transposase activity
ATY46_12230	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY46_12240	COG1862	Preprotein translocase
ATY46_12320	COG3293	Transposase
ATY46_12335	COG0405	Gamma-glutamyltransferase
ATY46_12340	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY46_12360	COG0742	ribosomal rna small subunit methyltransferase
ATY46_12385	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY46_12420	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_12425	COG3039	Transposase
ATY46_12455	COG0303	'Molybdopterin
ATY46_12465	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY46_12475	COG1426	Protein conserved in bacteria
ATY46_12490	COG0105	UTP biosynthetic process
ATY46_12500	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY46_12500	COG1024	Enoyl-CoA hydratase
ATY46_12505	COG0183	Belongs to the thiolase family
ATY46_12510	COG0038	chloride channel
ATY46_12530	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY46_12550	COG1674	ftsk spoiiie
ATY46_12555	COG0492	ferredoxin-NADP+ reductase activity
ATY46_12580	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY46_12585	COG0542	response to heat
ATY46_12590	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY46_12600	COG0482	sulfurtransferase activity
ATY46_12625	COG5001	Diguanylate cyclase
ATY46_12630	COG4585	Histidine kinase
ATY46_12640	COG5002	protein histidine kinase activity
ATY46_12660	COG0835	chemotaxis
ATY46_12660	COG0784	Response regulator, receiver
ATY46_12670	COG1558	bacterial-type flagellum-dependent cell motility
ATY46_12675	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY46_12680	COG1749	Flagellar hook protein flgE
ATY46_12685	COG4787	bacterial-type flagellum-dependent cell motility
ATY46_12690	COG4786	Flagellar basal body rod
ATY46_12720	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY46_12725	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY46_12755	COG2201	protein-glutamate methylesterase activity
ATY46_12760	COG2204	response regulator
ATY46_12775	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY46_12785	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_12815	COG1677	Flagellar hook-basal body complex protein FliE
ATY46_12865	COG3190	flagellar
ATY46_12875	COG1987	bacterial-type flagellum assembly
ATY46_12880	COG1684	flagellar biosynthetic protein fliR
ATY46_12885	COG5001	Diguanylate cyclase
ATY46_12885	COG3300	MHYT domain
ATY46_12890	COG5001	Diguanylate cyclase
ATY46_12890	COG3300	MHYT domain
ATY46_12905	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY46_12915	COG0455	bacterial-type flagellum organization
ATY46_12935	COG0643	Histidine kinase
ATY46_12935	COG2198	Histidine kinase
ATY46_12950	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_12965	COG3039	Transposase
ATY46_12970	COG3209	COG3209 Rhs family protein
ATY46_12980	COG3039	Transposase
ATY46_12990	COG3039	Transposase
ATY46_13085	COG3039	Transposase
ATY46_13090	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY46_13105	COG1271	oxidase subunit
ATY46_13110	COG1294	oxidase, subunit
ATY46_13170	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY46_13175	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY46_13185	COG0137	argininosuccinate synthase activity
ATY46_13190	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY46_13205	COG2166	iron-sulfur cluster assembly
ATY46_13220	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY46_13235	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY46_13245	COG4302	ethanolamine ammonia-lyase activity
ATY46_13250	COG3293	Transposase
ATY46_13275	COG3039	Transposase
ATY46_13285	COG4677	pectinesterase activity
ATY46_13325	COG0402	S-adenosylhomocysteine deaminase activity
ATY46_13340	COG1509	lysine 2,3-aminomutase activity
ATY46_13345	COG5001	Diguanylate cyclase
ATY46_13345	COG3300	MHYT domain
ATY46_13360	COG0483	inositol monophosphate 1-phosphatase activity
ATY46_13390	COG0513	Belongs to the DEAD box helicase family
ATY46_13410	COG0625	glutathione transferase activity
ATY46_13425	COG4681	YaeQ
ATY46_13430	COG2081	HI0933 family
ATY46_13450	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_13475	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY46_13480	COG0802	atpase or kinase
ATY46_13485	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY46_13485	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY46_13490	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY46_13500	COG3293	Transposase
ATY46_13520	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY46_13570	COG3328	transposase activity
ATY46_13600	COG2969	positive regulation of protein catabolic process
ATY46_13605	COG0625	glutathione transferase activity
ATY46_13610	COG2857	Cytochrome c1
ATY46_13620	COG0723	plastoquinol--plastocyanin reductase activity
ATY46_13625	COG0741	lytic transglycosylase activity
ATY46_13650	COG1702	phosphate starvation-inducible protein PhoH
ATY46_13670	COG4535	Mg2 and Co2 transporter CorC
ATY46_13685	COG1012	belongs to the aldehyde dehydrogenase family
ATY46_13695	COG1177	transmembrane transport
ATY46_13740	COG0174	glutamine synthetase
ATY46_13745	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY46_13750	COG3706	GGDEF domain
ATY46_13750	COG0745	RESPONSE REGULATOR receiver
ATY46_13755	COG0477	Major facilitator Superfamily
ATY46_13765	COG0243	molybdopterin cofactor binding
ATY46_13790	COG1121	(ABC) transporter
ATY46_13805	COG0784	Response regulator, receiver
ATY46_13805	COG5002	protein histidine kinase activity
ATY46_13805	COG2205	protein histidine kinase activity
ATY46_13815	COG3039	Transposase
ATY46_13830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY46_13835	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY46_13855	COG1609	Transcriptional regulator
ATY46_13860	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY46_13860	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY46_13865	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY46_13870	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY46_13870	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY46_13885	COG3039	Transposase
ATY46_13950	COG3501	Rhs element vgr protein
ATY46_14020	COG4771	TonB-dependent receptor
ATY46_14030	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY46_14050	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY46_14055	COG1360	Flagellar Motor Protein
ATY46_14060	COG1192	Involved in chromosome partitioning
ATY46_14065	COG0835	chemotaxis
ATY46_14075	COG0745	RESPONSE REGULATOR receiver
ATY46_14105	COG0840	transmembrane signaling receptor activity
ATY46_14115	COG0840	transmembrane signaling receptor activity
ATY46_14120	COG0840	transmembrane signaling receptor activity
ATY46_14125	COG0840	transmembrane signaling receptor activity
ATY46_14130	COG0840	transmembrane signaling receptor activity
ATY46_14135	COG0840	transmembrane signaling receptor activity
ATY46_14145	COG0835	chemotaxis
ATY46_14165	COG0840	transmembrane signaling receptor activity
ATY46_14190	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY46_14220	COG0318	PFAM AMP-dependent synthetase and ligase
ATY46_14225	COG1024	Enoyl-CoA hydratase
ATY46_14230	COG0784	Response regulator, receiver
ATY46_14230	COG2205	protein histidine kinase activity
ATY46_14230	COG2198	Histidine kinase
ATY46_14250	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY46_14280	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY46_14290	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY46_14295	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY46_14305	COG0505	Belongs to the CarA family
ATY46_14310	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY46_14320	COG3293	Transposase
ATY46_14325	COG2258	MOSC domain
ATY46_14330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY46_14395	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_14405	COG0477	Major facilitator Superfamily
ATY46_14415	COG1070	Carbohydrate kinase
ATY46_14430	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY46_14445	COG0800	Aldolase
ATY46_14460	COG3734	2-keto-3-deoxy-galactonokinase
ATY46_14465	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY46_14475	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY46_14490	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY46_14495	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY46_14505	COG0351	phosphomethylpyrimidine kinase
ATY46_14535	COG0583	DNA-binding transcription factor activity
ATY46_14540	COG1741	Belongs to the pirin family
ATY46_14560	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY46_14565	COG0305	Participates in initiation and elongation during chromosome replication
ATY46_14585	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY46_14595	COG2137	regulation of response to DNA damage stimulus
ATY46_14615	COG1546	Belongs to the CinA family
ATY46_14620	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY46_14625	COG1923	regulation of RNA biosynthetic process
ATY46_14635	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY46_14640	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY46_14650	COG1534	Rna-binding protein
ATY46_14665	COG1238	metal cluster binding
ATY46_14680	COG2840	Smr protein MutS2
ATY46_14745	COG1434	Gram-negative-bacterium-type cell wall biogenesis
ATY46_14750	COG0306	phosphate transporter
ATY46_14760	COG1253	flavin adenine dinucleotide binding
ATY46_14775	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY46_14780	COG0477	Major facilitator Superfamily
ATY46_14785	COG1132	(ABC) transporter
ATY46_14790	COG1136	(ABC) transporter
ATY46_14810	COG0438	transferase activity, transferring glycosyl groups
ATY46_14820	COG2264	protein methyltransferase activity
ATY46_14850	COG2244	polysaccharide biosynthetic process
ATY46_14900	COG1595	DNA-templated transcription, initiation
ATY46_14915	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY46_14935	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY46_14980	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY46_14985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY46_15015	COG2963	transposase activity
ATY46_15030	COG4644	lycopene metabolic process
ATY46_15040	COG1858	cytochrome C peroxidase
ATY46_15080	COG0515	serine threonine protein kinase
ATY46_15085	COG0631	protein serine/threonine phosphatase activity
ATY46_15120	COG3501	Rhs element vgr protein
ATY46_15130	COG3039	Transposase
ATY46_15140	COG3039	Transposase
ATY46_15190	COG3039	Transposase
ATY46_15210	COG3039	Transposase
ATY46_15240	COG2801	Transposase and inactivated derivatives
ATY46_15250	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ATY46_15250	COG0316	Belongs to the HesB IscA family
ATY46_15255	COG2154	pterin-4-alpha-carbinolamine dehydratase
ATY46_15265	COG0428	transporter
ATY46_15270	COG0428	transporter
ATY46_15285	COG1530	ribonuclease E activity
ATY46_15300	COG3293	Transposase
ATY46_15315	COG3039	Transposase
ATY46_15335	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY46_15375	COG3039	Transposase
ATY46_15415	COG1648	precorrin-2 dehydrogenase activity
ATY46_15415	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY46_15440	COG0746	molybdenum cofactor guanylyltransferase activity
ATY46_15505	COG4206	TonB-dependent receptor
ATY46_15535	COG4206	TonB-dependent receptor
ATY46_15585	COG0531	amino acid
ATY46_15600	COG0006	proline dipeptidase activity
ATY46_15610	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY46_15625	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY46_15630	COG3938	Belongs to the proline racemase family
ATY46_15640	COG0552	protein localization to endoplasmic reticulum
ATY46_15660	COG4191	Histidine kinase
ATY46_15660	COG0784	Response regulator, receiver
ATY46_15675	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY46_15785	COG0438	transferase activity, transferring glycosyl groups
ATY46_15790	COG0438	transferase activity, transferring glycosyl groups
ATY46_15835	COG0776	regulation of translation
ATY46_15850	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY46_15855	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY46_15860	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY46_15875	COG2963	transposase activity
ATY46_15895	COG0556	nucleotide-excision repair
ATY46_15900	COG4969	Belongs to the N-Me-Phe pilin family
ATY46_15940	COG1611	Belongs to the LOG family
ATY46_15950	COG2095	MarC family integral membrane protein
ATY46_15960	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY46_15965	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY46_16000	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY46_16020	COG0195	Participates in both transcription termination and antitermination
ATY46_16035	COG1007	ATP synthesis coupled electron transport
ATY46_16050	COG0713	ATP synthesis coupled electron transport
ATY46_16065	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY46_16070	COG1034	ATP synthesis coupled electron transport
ATY46_16075	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY46_16080	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY46_16100	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY46_16120	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_16135	COG3293	Transposase
ATY46_16215	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY46_16220	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY46_16230	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY46_16250	COG0433	COG0433 Predicted ATPase
ATY46_16255	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_16270	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY46_16280	COG0412	Dienelactone hydrolase
ATY46_16300	COG0489	protein tyrosine kinase activity
ATY46_16335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY46_16340	COG2311	Membrane
ATY46_16345	COG1047	Peptidyl-prolyl cis-trans
ATY46_16350	COG0791	NLP P60 protein
ATY46_16355	COG0791	NLP P60 protein
ATY46_16370	COG1301	dicarboxylic acid transport
ATY46_16375	COG1785	Belongs to the alkaline phosphatase family
ATY46_16380	COG0037	tRNA processing
ATY46_16390	COG0142	geranyltranstransferase activity
ATY46_16410	COG0312	modulator of DNA gyrase
ATY46_16420	COG0312	modulator of DNA gyrase
ATY46_16425	COG3164	Protein of unknown function
ATY46_16430	COG1530	ribonuclease E activity
ATY46_16440	COG2968	Membrane
ATY46_16475	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY46_16500	COG3118	belongs to the thioredoxin family
ATY46_16515	COG3293	Transposase
ATY46_16565	COG3293	Transposase
ATY46_16580	COG3039	Transposase
ATY46_16605	COG3293	Transposase
ATY46_16610	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_16635	COG2801	Transposase and inactivated derivatives
ATY46_16645	COG2963	transposase activity
ATY46_16690	COG0471	metal ion transport
ATY46_16690	COG3273	potassium ion transport
ATY46_16720	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_16730	COG1970	mechanosensitive ion channel activity
ATY46_16740	COG3293	Transposase
ATY46_16750	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY46_16755	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY46_16785	COG0308	aminopeptidase N
ATY46_16790	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY46_16800	COG2895	sulfate adenylyltransferase (ATP) activity
ATY46_16800	COG0529	Catalyzes the synthesis of activated sulfate
ATY46_16810	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY46_16840	COG0784	Response regulator, receiver
ATY46_16840	COG2205	protein histidine kinase activity
ATY46_16840	COG2198	Histidine kinase
ATY46_16880	COG3588	fructose-bisphosphate aldolase
ATY46_16885	COG0469	pyruvate kinase activity
ATY46_16925	COG0753	catalase activity
ATY46_16940	COG3039	Transposase
ATY46_16960	COG1917	Cupin 2, conserved barrel domain protein
ATY46_16960	COG2207	Transcriptional regulator
ATY46_16995	COG1506	peptidase
ATY46_16995	COG0823	Involved in the tonB-independent uptake of proteins
ATY46_17010	COG1297	OPT oligopeptide transporter protein
ATY46_17025	COG0587	DNA-directed DNA polymerase activity
ATY46_17070	COG0406	alpha-ribazole phosphatase activity
ATY46_17070	COG0328	RNA-DNA hybrid ribonuclease activity
ATY46_17110	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY46_17135	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY46_17140	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY46_17160	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY46_17240	COG3501	Rhs element vgr protein
ATY46_17305	COG3501	Rhs element vgr protein
ATY46_17310	COG3501	Rhs element vgr protein
ATY46_17315	COG3179	chitinase
ATY46_17320	COG3501	Rhs element vgr protein
ATY46_17375	COG3501	Rhs element vgr protein
ATY46_17400	COG3501	Rhs element vgr protein
ATY46_17410	COG3039	Transposase
ATY46_17420	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY46_17430	COG3501	Rhs element vgr protein
ATY46_17480	COG2963	transposase activity
ATY46_17510	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY46_17525	COG2197	response regulator
ATY46_17530	COG4585	Histidine kinase
ATY46_17545	COG2894	cell division
ATY46_17550	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY46_17560	COG0642	Histidine kinase
ATY46_17565	COG0745	RESPONSE REGULATOR receiver
ATY46_17570	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY46_17580	COG2194	sulfuric ester hydrolase activity
ATY46_17610	COG3551	Protein conserved in bacteria
ATY46_17655	COG2963	transposase activity
ATY46_17665	COG3293	Transposase
ATY46_17680	COG0203	ribosomal protein L17
ATY46_17685	COG0202	RNA polymerase activity
ATY46_17700	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY46_17705	COG0201	protein transport
ATY46_17715	COG1841	ribosomal large subunit assembly
ATY46_17720	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY46_17740	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY46_17760	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY46_17765	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY46_17770	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY46_17795	COG0089	rRNA binding
ATY46_17835	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY46_17870	COG0250	Participates in transcription elongation, termination and antitermination
ATY46_17875	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY46_17905	COG0012	GTP binding
ATY46_17920	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY46_17960	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY46_17980	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY46_18010	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY46_18020	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY46_18050	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY46_18055	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY46_18075	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY46_18090	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY46_18090	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY46_18135	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY46_18145	COG3634	alkyl hydroperoxide reductase activity
ATY46_18150	COG0583	DNA-binding transcription factor activity
ATY46_18155	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY46_18160	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY46_18220	COG4783	chaperone-mediated protein folding
ATY46_18235	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY46_18245	COG0438	transferase activity, transferring glycosyl groups
ATY46_18250	COG0671	phosphoesterase, PA-phosphatase related
ATY46_18265	COG2833	Protein of unknown function (DUF455)
ATY46_18285	COG0285	dihydrofolate synthase activity
ATY46_18290	COG0406	alpha-ribazole phosphatase activity
ATY46_18320	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY46_18325	COG4208	sulfate ABC transporter
ATY46_18330	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY46_18335	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY46_18340	COG0156	8-amino-7-oxononanoate synthase activity
ATY46_18370	COG1902	pentaerythritol trinitrate reductase activity
ATY46_18370	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY46_18380	COG2963	transposase activity
ATY46_18415	COG0745	RESPONSE REGULATOR receiver
ATY46_18415	COG3706	GGDEF domain
ATY46_18445	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_18455	COG3293	Transposase
ATY46_18500	COG3386	PFAM SMP-30 Gluconolaconase
ATY46_18520	COG1024	Enoyl-CoA hydratase
ATY46_18530	COG0318	PFAM AMP-dependent synthetase and ligase
ATY46_18535	COG0583	DNA-binding transcription factor activity
ATY46_18575	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY46_18580	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY46_18590	COG2096	Adenosyltransferase
ATY46_18595	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY46_18610	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY46_18665	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY46_18675	COG0642	Histidine kinase
ATY46_18690	COG4181	ATPase activity
ATY46_18700	COG2175	clavaminate synthase activity
ATY46_18710	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY46_18735	COG0667	Aldo Keto reductase
ATY46_18745	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY46_18750	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY46_18765	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY46_18770	COG4106	trans-aconitate 2-methyltransferase activity
ATY46_18780	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY46_18790	COG3293	Transposase
ATY46_18835	COG2226	methyltransferase
ATY46_18885	COG0604	alcohol dehydrogenase
ATY46_18885	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_18885	COG3321	synthase
ATY46_18895	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY46_18905	COG0494	nUDIX hydrolase
ATY46_18920	COG4942	peptidase
ATY46_18920	COG1388	LysM domain
ATY46_18945	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY46_18950	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY46_18970	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY46_18975	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY46_18990	COG3116	cell division
ATY46_19030	COG1988	membrane-bound metal-dependent
ATY46_19035	COG0277	FAD linked oxidase domain protein
ATY46_19040	COG0745	RESPONSE REGULATOR receiver
ATY46_19045	COG2205	protein histidine kinase activity
ATY46_19055	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY46_19060	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY46_19085	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY46_19115	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY46_19115	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY46_19155	COG0488	(ABC) transporter
ATY46_19200	COG0745	RESPONSE REGULATOR receiver
ATY46_19205	COG2205	protein histidine kinase activity
ATY46_19275	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY46_19285	COG2963	transposase activity
ATY46_19290	COG3039	Transposase
ATY46_19295	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY46_19300	COG3293	Transposase
ATY46_19310	COG3039	Transposase
ATY46_19350	COG3039	Transposase
ATY46_19355	COG3293	Transposase
ATY46_19390	COG0726	polysaccharide deacetylase
ATY46_19390	COG1649	PFAM Uncharacterised BCR, COG1649
ATY46_19395	COG1215	transferase activity, transferring glycosyl groups
ATY46_19405	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY46_19410	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY46_19415	COG1609	Transcriptional regulator
ATY46_19440	COG3250	beta-galactosidase activity
ATY46_19475	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY46_19480	COG4191	Histidine kinase
ATY46_19485	COG0784	Response regulator, receiver
ATY46_19490	COG4251	negative regulation of phosphorylation
ATY46_19495	COG2823	Periplasmic or secreted lipoprotein
ATY46_19500	COG0673	inositol 2-dehydrogenase activity
ATY46_19505	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY46_19545	COG1056	cytidyltransferase-related domain
ATY46_19545	COG1051	belongs to the nudix hydrolase family
ATY46_19580	COG1686	Belongs to the peptidase S11 family
ATY46_19590	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY46_19595	COG2951	lytic endotransglycosylase activity
ATY46_19630	COG0772	Belongs to the SEDS family
ATY46_19645	COG1792	Involved in formation and maintenance of cell shape
ATY46_19705	COG2199	diguanylate cyclase activity
ATY46_19710	COG0308	aminopeptidase N
ATY46_19735	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY46_19775	COG1505	serine-type exopeptidase activity
ATY46_19810	COG3275	phosphorelay sensor kinase activity
ATY46_19830	COG3706	GGDEF domain
ATY46_19840	COG0659	secondary active sulfate transmembrane transporter activity
ATY46_19845	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY46_19845	COG5297	Belongs to the glycosyl hydrolase family 6
ATY46_19855	COG0840	transmembrane signaling receptor activity
ATY46_19885	COG3293	Transposase
ATY46_19920	COG0598	Magnesium transport protein CorA
ATY46_19930	COG1113	amino acid transport
ATY46_19935	COG5297	Belongs to the glycosyl hydrolase family 6
ATY46_19940	COG4305	rare lipoprotein A
ATY46_19945	COG0697	spore germination
ATY46_20005	COG4221	oxidoreductase activity
ATY46_20020	COG2963	transposase activity
ATY46_20040	COG0456	acetyltransferase
ATY46_20050	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY46_20080	COG3227	Zinc metalloprotease (Elastase)
ATY46_20095	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY46_20095	COG2111	Na H antiporter
ATY46_20100	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY46_20105	COG0651	ATP synthesis coupled electron transport
ATY46_20115	COG2212	antiporter activity
ATY46_20120	COG1320	monovalent cation:proton antiporter activity
ATY46_20125	COG3293	Transposase
ATY46_20135	COG3039	Transposase
ATY46_20205	COG3293	Transposase
ATY46_20215	COG0183	Belongs to the thiolase family
ATY46_20265	COG3039	Transposase
ATY46_20295	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY46_20300	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY46_20310	COG4948	Mandelate Racemase Muconate Lactonizing
ATY46_20335	COG3293	Transposase
ATY46_20345	COG0531	amino acid
ATY46_20360	COG3293	Transposase
ATY46_20375	COG4682	membrane
ATY46_20380	COG3039	Transposase
ATY46_20385	COG2133	pyrroloquinoline quinone binding
ATY46_20415	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_20425	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY46_20435	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY46_20440	COG1610	YqeY-like protein
ATY46_20445	COG1295	ribonuclease BN
ATY46_20450	COG0358	DNA primase activity
ATY46_20505	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY46_20515	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY46_20530	COG2963	transposase activity
ATY46_20635	COG2963	transposase activity
ATY46_20640	COG2801	Transposase and inactivated derivatives
ATY46_20700	COG3039	Transposase
ATY46_20710	COG3328	transposase activity
ATY46_20725	COG1473	amidohydrolase
ATY46_20730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY46_20735	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY46_20745	COG5383	Protein conserved in bacteria
ATY46_20775	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY46_20795	COG0028	Belongs to the TPP enzyme family
ATY46_20800	COG4191	Histidine kinase
ATY46_20825	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY46_20840	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY46_20845	COG3177	Filamentation induced by cAMP protein fic
ATY46_20860	COG0596	Alpha beta hydrolase
ATY46_20870	COG0318	PFAM AMP-dependent synthetase and ligase
ATY46_20875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY46_20925	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY46_20960	COG3039	Transposase
ATY46_20985	COG2801	Transposase and inactivated derivatives
ATY46_20990	COG2963	transposase activity
ATY46_21075	COG2353	YceI-like domain
ATY46_21110	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY46_21125	COG3386	PFAM SMP-30 Gluconolaconase
ATY46_21170	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY46_21180	COG4771	TonB-dependent receptor
ATY46_21195	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY46_21225	COG1252	NADH dehydrogenase
ATY46_21235	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY46_21245	COG2201	protein-glutamate methylesterase activity
ATY46_21250	COG2177	Part of the ABC transporter FtsEX involved in
ATY46_21255	COG2884	Cell division ATP-binding protein ftsE
ATY46_21265	COG3118	belongs to the thioredoxin family
ATY46_21270	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY46_21280	COG2963	transposase activity
ATY46_21290	COG0729	surface antigen
ATY46_21295	COG2911	Protein conserved in bacteria
ATY46_21325	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY46_21340	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATY46_21395	COG1733	regulation of RNA biosynthetic process
ATY46_21400	COG0702	epimerase
ATY46_21430	COG0583	DNA-binding transcription factor activity
ATY46_21435	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY46_21445	COG2205	protein histidine kinase activity
ATY46_21450	COG2205	protein histidine kinase activity
ATY46_21455	COG0745	RESPONSE REGULATOR receiver
ATY46_21475	COG1902	pentaerythritol trinitrate reductase activity
ATY46_21480	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY46_21490	COG2814	Major facilitator Superfamily
ATY46_21495	COG0583	DNA-binding transcription factor activity
ATY46_21505	COG0084	hydrolase, TatD family'
ATY46_21535	COG3293	Transposase
ATY46_21555	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY46_21610	COG2826	transposase and inactivated derivatives, IS30 family
ATY46_21625	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY46_21630	COG1960	acyl-CoA dehydrogenase activity
ATY46_21690	COG0523	cobalamin synthesis protein
ATY46_21700	COG0697	spore germination
ATY46_21710	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY46_21730	COG0457	Tetratricopeptide repeat
ATY46_21745	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY46_21760	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY46_21760	COG0519	Catalyzes the synthesis of GMP from XMP
ATY46_21770	COG0805	protein transport
ATY46_21780	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY46_21790	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY46_21830	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY46_21840	COG4948	Mandelate Racemase Muconate Lactonizing
ATY46_21850	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY46_21855	COG0246	Mannitol dehydrogenase
ATY46_21880	COG3693	PFAM glycoside hydrolase, family 10
ATY46_21885	COG3693	PFAM glycoside hydrolase, family 10
ATY46_21905	COG2211	Major facilitator Superfamily
ATY46_21935	COG3293	Transposase
ATY46_21990	COG1846	Transcriptional regulator
ATY46_21995	COG1764	response to oxidative stress
ATY46_22080	COG3549	Plasmid maintenance system killer
ATY46_22095	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY46_22135	COG2032	superoxide dismutase activity
ATY46_22140	COG2032	superoxide dismutase activity
ATY46_22145	COG2204	response regulator
ATY46_22150	COG3852	Histidine kinase
ATY46_22155	COG0004	ammonium transporteR
ATY46_22160	COG0347	Belongs to the P(II) protein family
ATY46_22165	COG0174	glutamine synthetase
ATY46_22215	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY46_22225	COG2062	phosphohistidine phosphatase, SixA
ATY46_22230	COG0489	protein tyrosine kinase activity
ATY46_22250	COG1396	sequence-specific DNA binding
ATY46_22255	COG3550	peptidyl-serine autophosphorylation
ATY46_22260	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY46_22265	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY46_22280	COG0517	IMP dehydrogenase activity
ATY46_22280	COG1125	glycine betaine transport
ATY46_22295	COG1119	ATPase activity
ATY46_22305	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY46_22320	COG3039	Transposase
ATY46_22330	COG2963	transposase activity
ATY46_22345	COG0656	L-ascorbic acid biosynthetic process
ATY46_22350	COG2130	NADP-dependent
ATY46_22355	COG0667	Aldo Keto reductase
ATY46_22365	COG1187	pseudouridine synthase activity
ATY46_22380	COG1643	Atp-dependent helicase
ATY46_22385	COG4807	Protein conserved in bacteria
ATY46_22390	COG4948	Mandelate Racemase Muconate Lactonizing
ATY46_22395	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY46_22400	COG1028	Short-chain dehydrogenase reductase Sdr
ATY46_22420	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY46_22460	COG3162	membrane
ATY46_22465	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY46_22475	COG0708	Exodeoxyribonuclease III
ATY46_22490	COG2091	lysine biosynthetic process via aminoadipic acid
ATY46_22500	COG3540	Alkaline phosphatase
ATY46_22520	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY46_22525	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY46_22550	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY46_22555	COG0583	DNA-binding transcription factor activity
ATY46_22560	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY46_22575	COG0210	DNA helicase
ATY46_22590	COG0531	amino acid
ATY46_22595	COG1322	Protein conserved in bacteria
ATY46_22605	COG0386	Belongs to the glutathione peroxidase family
ATY46_22660	COG0793	Belongs to the peptidase S41A family
ATY46_22665	COG4942	peptidase
ATY46_22675	COG2234	aminopeptidase activity
ATY46_22725	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY46_22730	COG0302	gtp cyclohydrolase
ATY46_22755	COG0477	Major facilitator Superfamily
ATY46_22835	COG1929	Belongs to the glycerate kinase type-1 family
ATY46_22840	COG2271	Major facilitator Superfamily
ATY46_22855	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY46_22860	COG0861	Integral membrane protein TerC family
ATY46_22870	COG0584	glycerophosphoryl diester phosphodiesterase
ATY46_22880	COG0671	phosphoesterase, PA-phosphatase related
ATY46_22890	COG0726	polysaccharide deacetylase
ATY46_22905	COG0230	Belongs to the bacterial ribosomal protein bL34 family