locus-tag class description ATY48_00005 PF08299 Bacterial dnaA protein helix-turn-helix ATY48_00005 PF11638 DnaA N-terminal domain ATY48_00005 PF00308 Bacterial dnaA protein ATY48_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ATY48_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ATY48_00010 PF02767 DNA polymerase III beta subunit, central domain ATY48_00015 PF02463 RecF/RecN/SMC N terminal domain ATY48_00020 PF00204 DNA gyrase B ATY48_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ATY48_00020 PF01751 Toprim domain ATY48_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_00020 PF18053 DNA gyrase B subunit insert domain ATY48_00030 PF01435 Peptidase family M48 ATY48_00040 PF03544 Gram-negative bacterial TonB protein C-terminal ATY48_00045 PF01618 MotA/TolQ/ExbB proton channel family ATY48_00050 PF02472 Biopolymer transport protein ExbD/TolR ATY48_00055 PF02472 Biopolymer transport protein ExbD/TolR ATY48_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ATY48_00070 PF13091 PLD-like domain ATY48_00070 PF13396 Phospholipase_D-nuclease N-terminal ATY48_00080 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ATY48_00085 PF00155 Aminotransferase class I and II ATY48_00090 PF07715 TonB-dependent Receptor Plug Domain ATY48_00090 PF00593 TonB dependent receptor ATY48_00100 PF01609 Transposase DDE domain ATY48_00100 PF05598 Transposase domain (DUF772) ATY48_00105 PF01070 FMN-dependent dehydrogenase ATY48_00110 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ATY48_00125 PF12241 Trans-2-enoyl-CoA reductase catalytic region ATY48_00125 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ATY48_00125 PF07055 Enoyl reductase FAD binding domain ATY48_00130 PF00294 pfkB family carbohydrate kinase ATY48_00145 PF01609 Transposase DDE domain ATY48_00145 PF05598 Transposase domain (DUF772) ATY48_00155 PF00005 ABC transporter ATY48_00165 PF05598 Transposase domain (DUF772) ATY48_00175 PF00364 Biotin-requiring enzyme ATY48_00175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY48_00195 PF05598 Transposase domain (DUF772) ATY48_00195 PF01609 Transposase DDE domain ATY48_00205 PF00270 DEAD/DEAH box helicase ATY48_00205 PF00271 Helicase conserved C-terminal domain ATY48_00215 PF06903 VirK protein ATY48_00240 PF01609 Transposase DDE domain ATY48_00240 PF05598 Transposase domain (DUF772) ATY48_00290 PF03150 Di-haem cytochrome c peroxidase ATY48_00295 PF13460 NAD(P)H-binding ATY48_00300 PF00128 Alpha amylase, catalytic domain ATY48_00300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY48_00310 PF00128 Alpha amylase, catalytic domain ATY48_00315 PF02446 4-alpha-glucanotransferase ATY48_00320 PF11941 Domain of unknown function (DUF3459) ATY48_00320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY48_00320 PF00128 Alpha amylase, catalytic domain ATY48_00325 PF02806 Alpha amylase, C-terminal all-beta domain ATY48_00325 PF00128 Alpha amylase, catalytic domain ATY48_00325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY48_00330 PF00534 Glycosyl transferases group 1 ATY48_00330 PF08323 Starch synthase catalytic domain ATY48_00335 PF00990 Diguanylate cyclase, GGDEF domain ATY48_00335 PF00072 Response regulator receiver domain ATY48_00345 PF05661 Protein of unknown function (DUF808) ATY48_00350 PF03109 ABC1 family ATY48_00360 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_00370 PF12795 Mechanosensitive ion channel porin domain ATY48_00370 PF00924 Mechanosensitive ion channel ATY48_00370 PF12794 Mechanosensitive ion channel inner membrane domain 1 ATY48_00395 PF01464 Transglycosylase SLT domain ATY48_00410 PF01311 Bacterial export proteins, family 1 ATY48_00420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY48_00420 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY48_00420 PF18269 T3SS EscN ATPase C-terminal domain ATY48_00435 PF01514 Secretory protein of YscJ/FliF family ATY48_00450 PF01312 FlhB HrpN YscU SpaS Family ATY48_00455 PF00771 FHIPEP family ATY48_00470 PF00813 FliP family ATY48_00475 PF01313 Bacterial export proteins, family 3 ATY48_00520 PF05819 NolX protein ATY48_00545 PF00595 PDZ domain ATY48_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_00555 PF08521 Two-component sensor kinase N-terminal ATY48_00555 PF00512 His Kinase A (phospho-acceptor) domain ATY48_00560 PF08338 Domain of unknown function (DUF1731) ATY48_00560 PF01370 NAD dependent epimerase/dehydratase family ATY48_00570 PF01609 Transposase DDE domain ATY48_00570 PF05598 Transposase domain (DUF772) ATY48_00595 PF00665 Integrase core domain ATY48_00595 PF13936 Helix-turn-helix domain ATY48_00610 PF13344 Haloacid dehalogenase-like hydrolase ATY48_00610 PF00293 NUDIX domain ATY48_00635 PF13533 Biotin-lipoyl like ATY48_00640 PF00005 ABC transporter ATY48_00655 PF13936 Helix-turn-helix domain ATY48_00655 PF00665 Integrase core domain ATY48_00665 PF08845 Toxin SymE, type I toxin-antitoxin system ATY48_00680 PF03006 Haemolysin-III related ATY48_00685 PF00271 Helicase conserved C-terminal domain ATY48_00685 PF09369 Domain of unknown function (DUF1998) ATY48_00685 PF00270 DEAD/DEAH box helicase ATY48_00740 PF01493 GXGXG motif ATY48_00740 PF01645 Conserved region in glutamate synthase ATY48_00740 PF04898 Glutamate synthase central domain ATY48_00740 PF00310 Glutamine amidotransferases class-II ATY48_00745 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_00745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ATY48_00765 PF00665 Integrase core domain ATY48_00765 PF13936 Helix-turn-helix domain ATY48_00780 PF05598 Transposase domain (DUF772) ATY48_00785 PF04962 KduI/IolB family ATY48_00790 PF04962 KduI/IolB family ATY48_00795 PF00356 Bacterial regulatory proteins, lacI family ATY48_00815 PF00128 Alpha amylase, catalytic domain ATY48_00815 PF02806 Alpha amylase, C-terminal all-beta domain ATY48_00815 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY48_00820 PF00128 Alpha amylase, catalytic domain ATY48_00820 PF16657 Maltogenic Amylase, C-terminal domain ATY48_00825 PF00128 Alpha amylase, catalytic domain ATY48_00825 PF11896 Domain of unknown function (DUF3416) ATY48_00830 PF13276 HTH-like domain ATY48_00830 PF13683 Integrase core domain ATY48_00845 PF00872 Transposase, Mutator family ATY48_00860 PF05598 Transposase domain (DUF772) ATY48_00875 PF01078 Magnesium chelatase, subunit ChlI ATY48_00875 PF13335 Magnesium chelatase, subunit ChlI C-terminal ATY48_00880 PF04380 Membrane fusogenic activity ATY48_00885 PF00543 Nitrogen regulatory protein P-II ATY48_00905 PF17284 Spermidine synthase tetramerisation domain ATY48_00910 PF17810 Arginine decarboxylase helical bundle domain ATY48_00910 PF17944 Arginine decarboxylase C-terminal helical extension ATY48_00910 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY48_00915 PF05598 Transposase domain (DUF772) ATY48_00920 PF04717 Type VI secretion system, phage-baseplate injector ATY48_00920 PF16671 Actin cross-linking domain ATY48_00950 PF13932 GidA associated domain ATY48_00950 PF01134 Glucose inhibited division protein A ATY48_00960 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_00980 PF13649 Methyltransferase domain ATY48_00990 PF12697 Alpha/beta hydrolase family ATY48_01000 PF13276 HTH-like domain ATY48_01000 PF13683 Integrase core domain ATY48_01010 PF04349 Periplasmic glucan biosynthesis protein, MdoG ATY48_01020 PF00265 Thymidine kinase ATY48_01025 PF00580 UvrD/REP helicase N-terminal domain ATY48_01025 PF13361 UvrD-like helicase C-terminal domain ATY48_01035 PF04337 Protein of unknown function, DUF480 ATY48_01040 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ATY48_01045 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATY48_01050 PF04820 Tryptophan halogenase ATY48_01065 PF00356 Bacterial regulatory proteins, lacI family ATY48_01075 PF01553 Acyltransferase ATY48_01095 PF01527 Transposase ATY48_01110 PF00657 GDSL-like Lipase/Acylhydrolase ATY48_01120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ATY48_01125 PF01037 Lrp/AsnC ligand binding domain ATY48_01135 PF00593 TonB dependent receptor ATY48_01135 PF07715 TonB-dependent Receptor Plug Domain ATY48_01135 PF07660 Secretin and TonB N terminus short domain ATY48_01140 PF00593 TonB dependent receptor ATY48_01140 PF07715 TonB-dependent Receptor Plug Domain ATY48_01150 PF05598 Transposase domain (DUF772) ATY48_01180 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_01180 PF00107 Zinc-binding dehydrogenase ATY48_01185 PF00150 Cellulase (glycosyl hydrolase family 5) ATY48_01190 PF00150 Cellulase (glycosyl hydrolase family 5) ATY48_01195 PF00150 Cellulase (glycosyl hydrolase family 5) ATY48_01200 PF00665 Integrase core domain ATY48_01200 PF13936 Helix-turn-helix domain ATY48_01210 PF02810 SEC-C motif ATY48_01220 PF05598 Transposase domain (DUF772) ATY48_01220 PF01609 Transposase DDE domain ATY48_01225 PF01263 Aldose 1-epimerase ATY48_01230 PF07690 Major Facilitator Superfamily ATY48_01235 PF01126 Heme oxygenase ATY48_01240 PF08446 PAS fold ATY48_01240 PF13426 PAS domain ATY48_01240 PF00360 Phytochrome region ATY48_01240 PF01590 GAF domain ATY48_01245 PF03594 Benzoate membrane transport protein ATY48_01250 PF03594 Benzoate membrane transport protein ATY48_01285 PF01527 Transposase ATY48_01295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATY48_01295 PF06827 Zinc finger found in FPG and IleRS ATY48_01295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATY48_01305 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_01315 PF05598 Transposase domain (DUF772) ATY48_01325 PF04333 MlaA lipoprotein ATY48_01335 PF05494 MlaC protein ATY48_01340 PF02470 MlaD protein ATY48_01345 PF02405 Permease MlaE ATY48_01350 PF00005 ABC transporter ATY48_01380 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_01410 PF13276 HTH-like domain ATY48_01410 PF13683 Integrase core domain ATY48_01415 PF01527 Transposase ATY48_01435 PF13570 PQQ-like domain ATY48_01435 PF13360 PQQ-like domain ATY48_01435 PF01011 PQQ enzyme repeat ATY48_01440 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_01460 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ATY48_01460 PF06165 Glycosyltransferase family 36 ATY48_01475 PF00512 His Kinase A (phospho-acceptor) domain ATY48_01475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_01480 PF02659 Putative manganese efflux pump ATY48_01485 PF09339 IclR helix-turn-helix domain ATY48_01485 PF01614 Bacterial transcriptional regulator ATY48_01490 PF07690 Major Facilitator Superfamily ATY48_01495 PF05336 L-rhamnose mutarotase ATY48_01520 PF01432 Peptidase family M3 ATY48_01535 PF00472 RF-1 domain ATY48_01545 PF00849 RNA pseudouridylate synthase ATY48_01555 PF03109 ABC1 family ATY48_01580 PF05598 Transposase domain (DUF772) ATY48_01600 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_01605 PF01527 Transposase ATY48_01650 PF08546 Ketopantoate reductase PanE/ApbA C terminal ATY48_01650 PF02558 Ketopantoate reductase PanE/ApbA ATY48_01660 PF01061 ABC-2 type transporter ATY48_01665 PF00005 ABC transporter ATY48_01670 PF00175 Oxidoreductase NAD-binding domain ATY48_01670 PF01383 CpcD/allophycocyanin linker domain ATY48_01675 PF01545 Cation efflux family ATY48_01680 PF02583 Metal-sensitive transcriptional repressor ATY48_01690 PF01381 Helix-turn-helix ATY48_01700 PF00005 ABC transporter ATY48_01715 PF04820 Tryptophan halogenase ATY48_01735 PF02798 Glutathione S-transferase, N-terminal domain ATY48_01735 PF00043 Glutathione S-transferase, C-terminal domain ATY48_01740 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY48_01740 PF00326 Prolyl oligopeptidase family ATY48_01760 PF00490 Delta-aminolevulinic acid dehydratase ATY48_01770 PF03466 LysR substrate binding domain ATY48_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_01780 PF00667 FAD binding domain ATY48_01780 PF00175 Oxidoreductase NAD-binding domain ATY48_01780 PF00258 Flavodoxin ATY48_01790 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATY48_01790 PF08501 Shikimate dehydrogenase substrate binding domain ATY48_01790 PF01488 Shikimate / quinate 5-dehydrogenase ATY48_01800 PF06733 DEAD_2 ATY48_01800 PF13307 Helicase C-terminal domain ATY48_01820 PF13533 Biotin-lipoyl like ATY48_01825 PF00199 Catalase ATY48_01825 PF06628 Catalase-related immune-responsive ATY48_01845 PF01207 Dihydrouridine synthase (Dus) ATY48_01855 PF00486 Transcriptional regulatory protein, C terminal ATY48_01855 PF00072 Response regulator receiver domain ATY48_01860 PF00512 His Kinase A (phospho-acceptor) domain ATY48_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_01860 PF00672 HAMP domain ATY48_01885 PF03099 Biotin/lipoate A/B protein ligase family ATY48_01885 PF02237 Biotin protein ligase C terminal domain ATY48_01885 PF08279 HTH domain ATY48_01890 PF03309 Type III pantothenate kinase ATY48_01905 PF02223 Thymidylate kinase ATY48_01925 PF00491 Arginase family ATY48_01940 PF05532 CsbD-like ATY48_01945 PF00579 tRNA synthetases class I (W and Y) ATY48_01950 PF00753 Metallo-beta-lactamase superfamily ATY48_01975 PF00892 EamA-like transporter family ATY48_01995 PF00199 Catalase ATY48_02000 PF04542 Sigma-70 region 2 ATY48_02000 PF08281 Sigma-70, region 4 ATY48_02010 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY48_02010 PF00883 Cytosol aminopeptidase family, catalytic domain ATY48_02020 PF01594 AI-2E family transporter ATY48_02030 PF01040 UbiA prenyltransferase family ATY48_02040 PF04055 Radical SAM superfamily ATY48_02040 PF06968 Biotin and Thiamin Synthesis associated domain ATY48_02045 PF00155 Aminotransferase class I and II ATY48_02070 PF00535 Glycosyl transferase family 2 ATY48_02080 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY48_02080 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY48_02085 PF05166 YcgL domain ATY48_02100 PF00723 Glycosyl hydrolases family 15 ATY48_02105 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY48_02105 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY48_02115 PF02254 TrkA-N domain ATY48_02115 PF00999 Sodium/hydrogen exchanger family ATY48_02120 PF03448 MgtE intracellular N domain ATY48_02120 PF01769 Divalent cation transporter ATY48_02120 PF00571 CBS domain ATY48_02130 PF00583 Acetyltransferase (GNAT) family ATY48_02130 PF13380 CoA binding domain ATY48_02130 PF13607 Succinyl-CoA ligase like flavodoxin domain ATY48_02140 PF03477 ATP cone domain ATY48_02140 PF02867 Ribonucleotide reductase, barrel domain ATY48_02140 PF00317 Ribonucleotide reductase, all-alpha domain ATY48_02145 PF00268 Ribonucleotide reductase, small chain ATY48_02165 PF01527 Transposase ATY48_02170 PF13683 Integrase core domain ATY48_02170 PF13276 HTH-like domain ATY48_02180 PF00108 Thiolase, N-terminal domain ATY48_02180 PF02803 Thiolase, C-terminal domain ATY48_02185 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ATY48_02185 PF00775 Dioxygenase ATY48_02195 PF10397 Adenylosuccinate lyase C-terminus ATY48_02195 PF00206 Lyase ATY48_02200 PF12146 Serine aminopeptidase, S33 ATY48_02205 PF02627 Carboxymuconolactone decarboxylase family ATY48_02215 PF01614 Bacterial transcriptional regulator ATY48_02215 PF09339 IclR helix-turn-helix domain ATY48_02225 PF13936 Helix-turn-helix domain ATY48_02225 PF00665 Integrase core domain ATY48_02230 PF00106 short chain dehydrogenase ATY48_02245 PF05746 DALR anticodon binding domain ATY48_02245 PF03485 Arginyl tRNA synthetase N terminal domain ATY48_02245 PF00750 tRNA synthetases class I (R) ATY48_02250 PF04002 RadC-like JAB domain ATY48_02255 PF02441 Flavoprotein ATY48_02255 PF04127 DNA / pantothenate metabolism flavoprotein ATY48_02260 PF00692 dUTPase ATY48_02265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY48_02265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY48_02265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY48_02265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY48_02280 PF00535 Glycosyl transferase family 2 ATY48_02285 PF01370 NAD dependent epimerase/dehydratase family ATY48_02295 PF02195 ParB-like nuclease domain ATY48_02295 PF17762 HTH domain found in ParB protein ATY48_02300 PF13614 AAA domain ATY48_02310 PF00156 Phosphoribosyl transferase domain ATY48_02315 PF03372 Endonuclease/Exonuclease/phosphatase family ATY48_02320 PF07690 Major Facilitator Superfamily ATY48_02330 PF03702 Anhydro-N-acetylmuramic acid kinase ATY48_02335 PF04225 Opacity-associated protein A LysM-like domain ATY48_02335 PF01551 Peptidase family M23 ATY48_02340 PF00579 tRNA synthetases class I (W and Y) ATY48_02375 PF01527 Transposase ATY48_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_02380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY48_02380 PF00072 Response regulator receiver domain ATY48_02380 PF01627 Hpt domain ATY48_02380 PF00512 His Kinase A (phospho-acceptor) domain ATY48_02380 PF00672 HAMP domain ATY48_02385 PF00072 Response regulator receiver domain ATY48_02385 PF00486 Transcriptional regulatory protein, C terminal ATY48_02410 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_02420 PF01521 Iron-sulphur cluster biosynthesis ATY48_02430 PF09297 NADH pyrophosphatase zinc ribbon domain ATY48_02430 PF00293 NUDIX domain ATY48_02430 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ATY48_02435 PF17113 Regulatory signalling modulator protein AmpE ATY48_02435 PF03186 CobD/Cbib protein ATY48_02455 PF07690 Major Facilitator Superfamily ATY48_02470 PF12805 FUSC-like inner membrane protein yccS ATY48_02480 PF00005 ABC transporter ATY48_02480 PF02687 FtsX-like permease family ATY48_02480 PF12704 MacB-like periplasmic core domain ATY48_02485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATY48_02485 PF02843 Phosphoribosylglycinamide synthetase, C domain ATY48_02485 PF02844 Phosphoribosylglycinamide synthetase, N domain ATY48_02495 PF01808 AICARFT/IMPCHase bienzyme ATY48_02495 PF02142 MGS-like domain ATY48_02505 PF12147 Putative methyltransferase ATY48_02505 PF12146 Serine aminopeptidase, S33 ATY48_02515 PF12147 Putative methyltransferase ATY48_02515 PF12146 Serine aminopeptidase, S33 ATY48_02520 PF00782 Dual specificity phosphatase, catalytic domain ATY48_02530 PF02954 Bacterial regulatory protein, Fis family ATY48_02540 PF01381 Helix-turn-helix ATY48_02565 PF02785 Biotin carboxylase C-terminal domain ATY48_02565 PF00289 Biotin carboxylase, N-terminal domain ATY48_02565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY48_02575 PF00364 Biotin-requiring enzyme ATY48_02580 PF01220 Dehydroquinase class II ATY48_02590 PF02683 Cytochrome C biogenesis protein transmembrane region ATY48_02590 PF11412 Disulphide bond corrector protein DsbC ATY48_02595 PF03091 CutA1 divalent ion tolerance protein ATY48_02615 PF18074 Primosomal protein N C-terminal domain ATY48_02615 PF17764 3′ DNA-binding domain (3′BD) ATY48_02615 PF00271 Helicase conserved C-terminal domain ATY48_02615 PF00270 DEAD/DEAH box helicase ATY48_02615 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ATY48_02640 PF01554 MatE ATY48_02645 PF01343 Peptidase family S49 ATY48_02670 PF01300 Telomere recombination ATY48_02675 PF13368 Topoisomerase C-terminal repeat ATY48_02675 PF01751 Toprim domain ATY48_02675 PF01131 DNA topoisomerase ATY48_02685 PF00114 Pilin (bacterial filament) ATY48_02685 PF07963 Prokaryotic N-terminal methylation motif ATY48_02690 PF04361 Protein of unknown function (DUF494) ATY48_02695 PF02481 DNA recombination-mediator protein A ATY48_02695 PF17782 DprA winged helix domain ATY48_02700 PF01476 LysM domain ATY48_02705 PF01327 Polypeptide deformylase ATY48_02710 PF02911 Formyl transferase, C-terminal domain ATY48_02710 PF00551 Formyl transferase ATY48_02715 PF01189 16S rRNA methyltransferase RsmB/F ATY48_02715 PF01029 NusB family ATY48_02730 PF00535 Glycosyl transferase family 2 ATY48_02750 PF00925 GTP cyclohydrolase II ATY48_02760 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY48_02765 PF02580 D-Tyr-tRNA(Tyr) deacylase ATY48_02770 PF04545 Sigma-70, region 4 ATY48_02770 PF04542 Sigma-70 region 2 ATY48_02770 PF00140 Sigma-70 factor, region 1.2 ATY48_02770 PF03979 Sigma-70 factor, region 1.1 ATY48_02770 PF04546 Sigma-70, non-essential region ATY48_02770 PF04539 Sigma-70 region 3 ATY48_02785 PF00589 Phage integrase family ATY48_02805 PF07996 Type IV secretion system proteins ATY48_02820 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ATY48_02835 PF03852 DNA mismatch endonuclease Vsr ATY48_02840 PF00145 C-5 cytosine-specific DNA methylase ATY48_02915 PF00005 ABC transporter ATY48_02930 PF07715 TonB-dependent Receptor Plug Domain ATY48_02930 PF00593 TonB dependent receptor ATY48_02980 PF02322 Cytochrome bd terminal oxidase subunit II ATY48_02985 PF01654 Cytochrome bd terminal oxidase subunit I ATY48_02990 PF00158 Sigma-54 interaction domain ATY48_02990 PF00072 Response regulator receiver domain ATY48_02990 PF02954 Bacterial regulatory protein, Fis family ATY48_03005 PF08448 PAS fold ATY48_03005 PF01739 CheR methyltransferase, SAM binding domain ATY48_03005 PF01339 CheB methylesterase ATY48_03005 PF03705 CheR methyltransferase, all-alpha domain ATY48_03025 PF00672 HAMP domain ATY48_03025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_03025 PF02743 Cache domain ATY48_03025 PF06580 Histidine kinase ATY48_03030 PF00072 Response regulator receiver domain ATY48_03030 PF04397 LytTr DNA-binding domain ATY48_03035 PF00072 Response regulator receiver domain ATY48_03035 PF04397 LytTr DNA-binding domain ATY48_03045 PF13520 Amino acid permease ATY48_03060 PF01431 Peptidase family M13 ATY48_03060 PF05649 Peptidase family M13 ATY48_03075 PF00248 Aldo/keto reductase family ATY48_03080 PF03358 NADPH-dependent FMN reductase ATY48_03090 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY48_03100 PF03167 Uracil DNA glycosylase superfamily ATY48_03105 PF02469 Fasciclin domain ATY48_03120 PF00999 Sodium/hydrogen exchanger family ATY48_03125 PF00005 ABC transporter ATY48_03130 PF01061 ABC-2 type transporter ATY48_03150 PF00082 Subtilase family ATY48_03150 PF04151 Bacterial pre-peptidase C-terminal domain ATY48_03160 PF00072 Response regulator receiver domain ATY48_03160 PF13188 PAS domain ATY48_03160 PF08448 PAS fold ATY48_03160 PF00512 His Kinase A (phospho-acceptor) domain ATY48_03160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_03165 PF00072 Response regulator receiver domain ATY48_03165 PF00486 Transcriptional regulatory protein, C terminal ATY48_03180 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY48_03180 PF00691 OmpA family ATY48_03185 PF01618 MotA/TolQ/ExbB proton channel family ATY48_03195 PF01641 SelR domain ATY48_03205 PF01037 Lrp/AsnC ligand binding domain ATY48_03210 PF01266 FAD dependent oxidoreductase ATY48_03215 PF01168 Alanine racemase, N-terminal domain ATY48_03215 PF00842 Alanine racemase, C-terminal domain ATY48_03235 PF00989 PAS fold ATY48_03235 PF00512 His Kinase A (phospho-acceptor) domain ATY48_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_03245 PF07995 Glucose / Sorbosone dehydrogenase ATY48_03260 PF08468 Methyltransferase small domain N-terminal ATY48_03260 PF05175 Methyltransferase small domain ATY48_03265 PF00849 RNA pseudouridylate synthase ATY48_03265 PF01479 S4 domain ATY48_03270 PF13419 Haloacid dehalogenase-like hydrolase ATY48_03300 PF04461 Protein of unknown function (DUF520) ATY48_03305 PF00892 EamA-like transporter family ATY48_03310 PF09383 NIL domain ATY48_03310 PF00005 ABC transporter ATY48_03315 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_03320 PF03180 NLPA lipoprotein ATY48_03345 PF02817 e3 binding domain ATY48_03345 PF00364 Biotin-requiring enzyme ATY48_03345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY48_03355 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_03355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY48_03375 PF00119 ATP synthase A chain ATY48_03380 PF00137 ATP synthase subunit C ATY48_03385 PF00430 ATP synthase B/B' CF(0) ATY48_03390 PF00213 ATP synthase delta (OSCP) subunit ATY48_03395 PF00306 ATP synthase alpha/beta chain, C terminal domain ATY48_03395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY48_03395 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY48_03400 PF00231 ATP synthase ATY48_03405 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY48_03405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY48_03410 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATY48_03415 PF01817 Chorismate mutase type II ATY48_03425 PF14602 Hexapeptide repeat of succinyl-transferase ATY48_03425 PF00132 Bacterial transferase hexapeptide (six repeats) ATY48_03425 PF12804 MobA-like NTP transferase domain ATY48_03430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_03430 PF00072 Response regulator receiver domain ATY48_03430 PF13426 PAS domain ATY48_03430 PF08448 PAS fold ATY48_03430 PF00512 His Kinase A (phospho-acceptor) domain ATY48_03460 PF08402 TOBE domain ATY48_03460 PF00005 ABC transporter ATY48_03465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_03470 PF01380 SIS domain ATY48_03485 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_03500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY48_03505 PF05275 Copper resistance protein B precursor (CopB) ATY48_03510 PF00394 Multicopper oxidase ATY48_03510 PF07732 Multicopper oxidase ATY48_03510 PF07731 Multicopper oxidase ATY48_03525 PF01432 Peptidase family M3 ATY48_03535 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY48_03535 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY48_03540 PF07977 FabA-like domain ATY48_03545 PF00817 impB/mucB/samB family ATY48_03545 PF11799 impB/mucB/samB family C-terminal domain ATY48_03550 PF13419 Haloacid dehalogenase-like hydrolase ATY48_03560 PF13185 GAF domain ATY48_03575 PF01242 6-pyruvoyl tetrahydropterin synthase ATY48_03585 PF00270 DEAD/DEAH box helicase ATY48_03585 PF00271 Helicase conserved C-terminal domain ATY48_03595 PF13417 Glutathione S-transferase, N-terminal domain ATY48_03600 PF00437 Type II/IV secretion system protein ATY48_03620 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_03620 PF00571 CBS domain ATY48_03625 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY48_03635 PF01370 NAD dependent epimerase/dehydratase family ATY48_03665 PF00872 Transposase, Mutator family ATY48_03675 PF00005 ABC transporter ATY48_03685 PF00766 Electron transfer flavoprotein FAD-binding domain ATY48_03685 PF01012 Electron transfer flavoprotein domain ATY48_03690 PF01012 Electron transfer flavoprotein domain ATY48_03695 PF16363 GDP-mannose 4,6 dehydratase ATY48_03700 PF00483 Nucleotidyl transferase ATY48_03705 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ATY48_03710 PF04321 RmlD substrate binding domain ATY48_03715 PF00483 Nucleotidyl transferase ATY48_03715 PF01050 Mannose-6-phosphate isomerase ATY48_03720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY48_03720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY48_03720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY48_03720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY48_03725 PF01144 Coenzyme A transferase ATY48_03730 PF01144 Coenzyme A transferase ATY48_03735 PF05045 Rhamnan synthesis protein F ATY48_03735 PF14307 Glycosyltransferase WbsX ATY48_03755 PF02470 MlaD protein ATY48_03755 PF03886 ABC-type transport auxiliary lipoprotein component ATY48_03760 PF00005 ABC transporter ATY48_03765 PF02405 Permease MlaE ATY48_03775 PF00816 H-NS histone family ATY48_03780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY48_03780 PF04073 Aminoacyl-tRNA editing domain ATY48_03780 PF03129 Anticodon binding domain ATY48_03790 PF01066 CDP-alcohol phosphatidyltransferase ATY48_03815 PF01609 Transposase DDE domain ATY48_03815 PF05598 Transposase domain (DUF772) ATY48_03825 PF01464 Transglycosylase SLT domain ATY48_03825 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ATY48_03830 PF00544 Pectate lyase ATY48_03855 PF13276 HTH-like domain ATY48_03855 PF13683 Integrase core domain ATY48_03860 PF01527 Transposase ATY48_03870 PF08264 Anticodon-binding domain of tRNA ATY48_03870 PF00133 tRNA synthetases class I (I, L, M and V) ATY48_03870 PF10458 Valyl tRNA synthetase tRNA binding arm ATY48_03885 PF00883 Cytosol aminopeptidase family, catalytic domain ATY48_03885 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY48_03895 PF03739 Lipopolysaccharide export system permease LptF/LptG ATY48_03905 PF00589 Phage integrase family ATY48_03905 PF02899 Phage integrase, N-terminal SAM-like domain ATY48_03910 PF13098 Thioredoxin-like domain ATY48_03910 PF10411 Disulfide bond isomerase protein N-terminus ATY48_03920 PF02769 AIR synthase related protein, C-terminal domain ATY48_03920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATY48_03920 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ATY48_03925 PF05658 Head domain of trimeric autotransporter adhesin ATY48_03925 PF03895 YadA-like membrane anchor domain ATY48_03925 PF13018 Extended Signal Peptide of Type V secretion system ATY48_03925 PF05662 Coiled stalk of trimeric autotransporter adhesin ATY48_03945 PF00437 Type II/IV secretion system protein ATY48_03945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY48_03955 PF00482 Type II secretion system (T2SS), protein F ATY48_03960 PF08334 Type II secretion system (T2SS), protein G ATY48_03965 PF12019 Type II transport protein GspH ATY48_03970 PF07963 Prokaryotic N-terminal methylation motif ATY48_03980 PF03934 Type II secretion system (T2SS), protein K ATY48_03985 PF05137 Fimbrial assembly protein (PilN) ATY48_03990 PF10741 Type II secretion system (T2SS), protein M subtype b ATY48_04000 PF03958 Bacterial type II/III secretion system short domain ATY48_04000 PF00263 Bacterial type II and III secretion system protein ATY48_04010 PF07702 UTRA domain ATY48_04010 PF00392 Bacterial regulatory proteins, gntR family ATY48_04020 PF07715 TonB-dependent Receptor Plug Domain ATY48_04020 PF00593 TonB dependent receptor ATY48_04045 PF09827 CRISPR associated protein Cas2 ATY48_04050 PF01867 CRISPR associated protein Cas1 ATY48_04070 PF09704 CRISPR-associated protein (Cas_Cas5) ATY48_04085 PF02545 Maf-like protein ATY48_04090 PF02620 Large ribosomal RNA subunit accumulation protein YceD ATY48_04095 PF01783 Ribosomal L32p protein family ATY48_04100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY48_04100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY48_04110 PF00698 Acyl transferase domain ATY48_04120 PF00550 Phosphopantetheine attachment site ATY48_04125 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY48_04125 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY48_04130 PF04715 Anthranilate synthase component I, N terminal region ATY48_04130 PF00425 chorismate binding enzyme ATY48_04135 PF02618 YceG-like family ATY48_04140 PF09115 DNA polymerase III, delta subunit, C terminal ATY48_04160 PF00158 Sigma-54 interaction domain ATY48_04160 PF06506 Propionate catabolism activator ATY48_04160 PF02954 Bacterial regulatory protein, Fis family ATY48_04170 PF00285 Citrate synthase, C-terminal domain ATY48_04175 PF00694 Aconitase C-terminal domain ATY48_04175 PF00330 Aconitase family (aconitate hydratase) ATY48_04180 PF04303 PrpF protein ATY48_04185 PF01609 Transposase DDE domain ATY48_04185 PF05598 Transposase domain (DUF772) ATY48_04190 PF07715 TonB-dependent Receptor Plug Domain ATY48_04190 PF00593 TonB dependent receptor ATY48_04225 PF00665 Integrase core domain ATY48_04225 PF13936 Helix-turn-helix domain ATY48_04235 PF08534 Redoxin ATY48_04245 PF01556 DnaJ C terminal domain ATY48_04245 PF00226 DnaJ domain ATY48_04250 PF00072 Response regulator receiver domain ATY48_04255 PF12221 Bacterial membrane protein N terminal ATY48_04255 PF01145 SPFH domain / Band 7 family ATY48_04260 PF01145 SPFH domain / Band 7 family ATY48_04270 PF00709 Adenylosuccinate synthetase ATY48_04275 PF01433 Peptidase family M1 domain ATY48_04275 PF11838 ERAP1-like C-terminal domain ATY48_04285 PF05598 Transposase domain (DUF772) ATY48_04300 PF05598 Transposase domain (DUF772) ATY48_04300 PF01609 Transposase DDE domain ATY48_04320 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY48_04325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ATY48_04330 PF02321 Outer membrane efflux protein ATY48_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_04365 PF00330 Aconitase family (aconitate hydratase) ATY48_04370 PF00694 Aconitase C-terminal domain ATY48_04380 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY48_04385 PF00682 HMGL-like ATY48_04385 PF08502 LeuA allosteric (dimerisation) domain ATY48_04390 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_04400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY48_04400 PF00205 Thiamine pyrophosphate enzyme, central domain ATY48_04400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY48_04405 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATY48_04405 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATY48_04410 PF01964 Radical SAM ThiC family ATY48_04410 PF13667 ThiC-associated domain ATY48_04415 PF18500 CadC C-terminal domain 1 ATY48_04415 PF00486 Transcriptional regulatory protein, C terminal ATY48_04420 PF12833 Helix-turn-helix domain ATY48_04425 PF07715 TonB-dependent Receptor Plug Domain ATY48_04425 PF00593 TonB dependent receptor ATY48_04435 PF00719 Inorganic pyrophosphatase ATY48_04470 PF00365 Phosphofructokinase ATY48_04480 PF01225 Mur ligase family, catalytic domain ATY48_04480 PF08245 Mur ligase middle domain ATY48_04480 PF02875 Mur ligase family, glutamate ligase domain ATY48_04490 PF01062 Bestrophin, RFP-TM, chloride channel ATY48_04505 PF02798 Glutathione S-transferase, N-terminal domain ATY48_04505 PF00043 Glutathione S-transferase, C-terminal domain ATY48_04510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATY48_04510 PF00056 lactate/malate dehydrogenase, NAD binding domain ATY48_04515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATY48_04540 PF01474 Class-II DAHP synthetase family ATY48_04550 PF02600 Disulfide bond formation protein DsbB ATY48_04560 PF01527 Transposase ATY48_04565 PF13683 Integrase core domain ATY48_04565 PF13276 HTH-like domain ATY48_04610 PF13936 Helix-turn-helix domain ATY48_04610 PF00665 Integrase core domain ATY48_04640 PF01527 Transposase ATY48_04670 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_04690 PF01609 Transposase DDE domain ATY48_04690 PF05598 Transposase domain (DUF772) ATY48_04710 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_04715 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY48_04745 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY48_04745 PF18324 Hypothetical protein TT1725 ATY48_04775 PF01527 Transposase ATY48_04800 PF05697 Bacterial trigger factor protein (TF) ATY48_04800 PF05698 Bacterial trigger factor protein (TF) C-terminus ATY48_04805 PF00574 Clp protease ATY48_04810 PF06689 ClpX C4-type zinc finger ATY48_04810 PF07724 AAA domain (Cdc48 subfamily) ATY48_04810 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_04815 PF02190 ATP-dependent protease La (LON) substrate-binding domain ATY48_04815 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_04815 PF05362 Lon protease (S16) C-terminal proteolytic domain ATY48_04820 PF00216 Bacterial DNA-binding protein ATY48_04845 PF05257 CHAP domain ATY48_04845 PF01476 LysM domain ATY48_04850 PF16123 Hydroxyacylglutathione hydrolase C-terminus ATY48_04850 PF00753 Metallo-beta-lactamase superfamily ATY48_04860 PF00075 RNase H ATY48_04865 PF00929 Exonuclease ATY48_04925 PF00589 Phage integrase family ATY48_04925 PF13356 Arm DNA-binding domain ATY48_04935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATY48_04945 PF00753 Metallo-beta-lactamase superfamily ATY48_04945 PF12706 Beta-lactamase superfamily domain ATY48_04950 PF04055 Radical SAM superfamily ATY48_04950 PF06463 Molybdenum Cofactor Synthesis C ATY48_04960 PF01967 MoaC family ATY48_04965 PF02597 ThiS family ATY48_04970 PF02391 MoaE protein ATY48_04980 PF12169 DNA polymerase III subunits gamma and tau domain III ATY48_04980 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ATY48_04980 PF12170 DNA polymerase III tau subunit V interacting with alpha ATY48_04985 PF02575 YbaB/EbfC DNA-binding family ATY48_04990 PF02132 RecR protein ATY48_04990 PF13662 Toprim domain ATY48_04995 PF01230 HIT domain ATY48_05005 PF11992 Domain of unknown function (DUF3488) ATY48_05005 PF01841 Transglutaminase-like superfamily ATY48_05005 PF13559 Domain of unknown function (DUF4129) ATY48_05015 PF07726 ATPase family associated with various cellular activities (AAA) ATY48_05015 PF17863 AAA lid domain ATY48_05035 PF01327 Polypeptide deformylase ATY48_05070 PF05598 Transposase domain (DUF772) ATY48_05070 PF01609 Transposase DDE domain ATY48_05090 PF00462 Glutaredoxin ATY48_05095 PF01522 Polysaccharide deacetylase ATY48_05115 PF03193 RsgA GTPase ATY48_05130 PF00128 Alpha amylase, catalytic domain ATY48_05145 PF00356 Bacterial regulatory proteins, lacI family ATY48_05150 PF00106 short chain dehydrogenase ATY48_05155 PF03600 Citrate transporter ATY48_05165 PF00072 Response regulator receiver domain ATY48_05165 PF00486 Transcriptional regulatory protein, C terminal ATY48_05170 PF00512 His Kinase A (phospho-acceptor) domain ATY48_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_05170 PF08521 Two-component sensor kinase N-terminal ATY48_05180 PF00072 Response regulator receiver domain ATY48_05180 PF00196 Bacterial regulatory proteins, luxR family ATY48_05205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_05205 PF03466 LysR substrate binding domain ATY48_05215 PF07690 Major Facilitator Superfamily ATY48_05220 PF00512 His Kinase A (phospho-acceptor) domain ATY48_05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_05230 PF00375 Sodium:dicarboxylate symporter family ATY48_05235 PF03949 Malic enzyme, NAD binding domain ATY48_05235 PF00390 Malic enzyme, N-terminal domain ATY48_05235 PF01515 Phosphate acetyl/butaryl transferase ATY48_05245 PF01527 Transposase ATY48_05250 PF13683 Integrase core domain ATY48_05250 PF13276 HTH-like domain ATY48_05260 PF01527 Transposase ATY48_05275 PF02581 Thiamine monophosphate synthase ATY48_05280 PF00301 Rubredoxin ATY48_05285 PF13369 Transglutaminase-like superfamily ATY48_05295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ATY48_05305 PF01812 5-formyltetrahydrofolate cyclo-ligase family ATY48_05310 PF05164 Cell division protein ZapA ATY48_05320 PF03695 Uncharacterised protein family (UPF0149) ATY48_05325 PF05195 Aminopeptidase P, N-terminal domain ATY48_05325 PF00557 Metallopeptidase family M24 ATY48_05340 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_05345 PF00557 Metallopeptidase family M24 ATY48_05360 PF06969 HemN C-terminal domain ATY48_05360 PF04055 Radical SAM superfamily ATY48_05365 PF01725 Ham1 family ATY48_05375 PF03725 3' exoribonuclease family, domain 2 ATY48_05375 PF01138 3' exoribonuclease family, domain 1 ATY48_05380 PF03755 YicC-like family, N-terminal region ATY48_05380 PF08340 Domain of unknown function (DUF1732) ATY48_05385 PF00625 Guanylate kinase ATY48_05395 PF01192 RNA polymerase Rpb6 ATY48_05400 PF02824 TGS domain ATY48_05400 PF04607 Region found in RelA / SpoT proteins ATY48_05400 PF13291 ACT domain ATY48_05405 PF01042 Endoribonuclease L-PSP ATY48_05410 PF17191 RecG wedge domain ATY48_05410 PF00271 Helicase conserved C-terminal domain ATY48_05410 PF00270 DEAD/DEAH box helicase ATY48_05415 PF01156 Inosine-uridine preferring nucleoside hydrolase ATY48_05420 PF01197 Ribosomal protein L31 ATY48_05425 PF00285 Citrate synthase, C-terminal domain ATY48_05440 PF17092 Penicillin-binding protein OB-like domain ATY48_05440 PF00905 Penicillin binding protein transpeptidase domain ATY48_05440 PF00912 Transglycosylase ATY48_05465 PF00263 Bacterial type II and III secretion system protein ATY48_05465 PF07660 Secretin and TonB N terminus short domain ATY48_05465 PF11741 AMIN domain ATY48_05465 PF03958 Bacterial type II/III secretion system short domain ATY48_05490 PF07726 ATPase family associated with various cellular activities (AAA) ATY48_05490 PF17863 AAA lid domain ATY48_05510 PF00092 von Willebrand factor type A domain ATY48_05510 PF07584 Aerotolerance regulator N-terminal ATY48_05525 PF00375 Sodium:dicarboxylate symporter family ATY48_05530 PF02779 Transketolase, pyrimidine binding domain ATY48_05530 PF02780 Transketolase, C-terminal domain ATY48_05530 PF00456 Transketolase, thiamine diphosphate binding domain ATY48_05535 PF07715 TonB-dependent Receptor Plug Domain ATY48_05535 PF00593 TonB dependent receptor ATY48_05540 PF04225 Opacity-associated protein A LysM-like domain ATY48_05540 PF01551 Peptidase family M23 ATY48_05545 PF03734 L,D-transpeptidase catalytic domain ATY48_05545 PF01476 LysM domain ATY48_05570 PF00501 AMP-binding enzyme ATY48_05590 PF00486 Transcriptional regulatory protein, C terminal ATY48_05590 PF00072 Response regulator receiver domain ATY48_05595 PF08521 Two-component sensor kinase N-terminal ATY48_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_05595 PF00512 His Kinase A (phospho-acceptor) domain ATY48_05615 PF00005 ABC transporter ATY48_05615 PF03459 TOBE domain ATY48_05620 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_05630 PF00753 Metallo-beta-lactamase superfamily ATY48_05630 PF04273 Putative phosphatase (DUF442) ATY48_05665 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_05675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATY48_05675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATY48_05680 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_05695 PF00512 His Kinase A (phospho-acceptor) domain ATY48_05695 PF00672 HAMP domain ATY48_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_05700 PF00072 Response regulator receiver domain ATY48_05700 PF00486 Transcriptional regulatory protein, C terminal ATY48_05710 PF08443 RimK-like ATP-grasp domain ATY48_05710 PF18030 RimK PreATP-grasp domain ATY48_05750 PF00520 Ion transport protein ATY48_05750 PF00027 Cyclic nucleotide-binding domain ATY48_05755 PF00202 Aminotransferase class-III ATY48_05770 PF01593 Flavin containing amine oxidoreductase ATY48_05775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATY48_05775 PF00034 Cytochrome c ATY48_05790 PF00155 Aminotransferase class I and II ATY48_05800 PF00127 Copper binding proteins, plastocyanin/azurin family ATY48_05810 PF00202 Aminotransferase class-III ATY48_05835 PF03377 TAL effector repeat ATY48_05850 PF03377 TAL effector repeat ATY48_05865 PF03377 TAL effector repeat ATY48_05880 PF03377 TAL effector repeat ATY48_05900 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATY48_05910 PF01761 3-dehydroquinate synthase ATY48_05915 PF01202 Shikimate kinase ATY48_05920 PF01243 Pyridoxamine 5'-phosphate oxidase ATY48_05920 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATY48_05930 PF04012 PspA/IM30 family ATY48_05955 PF03738 Glutathionylspermidine synthase preATP-grasp ATY48_05980 PF00376 MerR family regulatory protein ATY48_05980 PF09278 MerR, DNA binding ATY48_06015 PF12706 Beta-lactamase superfamily domain ATY48_06035 PF00324 Amino acid permease ATY48_06040 PF00196 Bacterial regulatory proteins, luxR family ATY48_06045 PF00561 alpha/beta hydrolase fold ATY48_06050 PF00324 Amino acid permease ATY48_06060 PF01654 Cytochrome bd terminal oxidase subunit I ATY48_06065 PF02322 Cytochrome bd terminal oxidase subunit II ATY48_06070 PF00756 Putative esterase ATY48_06075 PF03448 MgtE intracellular N domain ATY48_06075 PF01769 Divalent cation transporter ATY48_06075 PF00571 CBS domain ATY48_06080 PF00391 PEP-utilising enzyme, mobile domain ATY48_06080 PF02896 PEP-utilising enzyme, TIM barrel domain ATY48_06080 PF05524 PEP-utilising enzyme, N-terminal ATY48_06085 PF00381 PTS HPr component phosphorylation site ATY48_06095 PF03668 P-loop ATPase protein family ATY48_06100 PF02603 HPr Serine kinase N terminus ATY48_06100 PF07475 HPr Serine kinase C-terminal domain ATY48_06105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY48_06110 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ATY48_06115 PF04552 Sigma-54, DNA binding domain ATY48_06115 PF04963 Sigma-54 factor, core binding domain ATY48_06115 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY48_06120 PF00005 ABC transporter ATY48_06125 PF03968 OstA-like protein ATY48_06140 PF00571 CBS domain ATY48_06140 PF01380 SIS domain ATY48_06145 PF01722 BolA-like protein ATY48_06150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY48_06170 PF00551 Formyl transferase ATY48_06185 PF00586 AIR synthase related protein, N-terminal domain ATY48_06185 PF02769 AIR synthase related protein, C-terminal domain ATY48_06195 PF01594 AI-2E family transporter ATY48_06200 PF00308 Bacterial dnaA protein ATY48_06205 PF00483 Nucleotidyl transferase ATY48_06210 PF01636 Phosphotransferase enzyme family ATY48_06230 PF07687 Peptidase dimerisation domain ATY48_06230 PF01546 Peptidase family M20/M25/M40 ATY48_06245 PF01527 Transposase ATY48_06260 PF05598 Transposase domain (DUF772) ATY48_06280 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ATY48_06285 PF01263 Aldose 1-epimerase ATY48_06290 PF01578 Cytochrome C assembly protein ATY48_06300 PF02881 SRP54-type protein, helical bundle domain ATY48_06300 PF02978 Signal peptide binding domain ATY48_06300 PF00448 SRP54-type protein, GTPase domain ATY48_06310 PF03060 Nitronate monooxygenase ATY48_06320 PF00886 Ribosomal protein S16 ATY48_06325 PF01782 RimM N-terminal domain ATY48_06325 PF05239 PRC-barrel domain ATY48_06330 PF01746 tRNA (Guanine-1)-methyltransferase ATY48_06335 PF01245 Ribosomal protein L19 ATY48_06340 PF01554 MatE ATY48_06345 PF01479 S4 domain ATY48_06365 PF01541 GIY-YIG catalytic domain ATY48_06370 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_06370 PF07724 AAA domain (Cdc48 subfamily) ATY48_06370 PF17871 AAA lid domain ATY48_06370 PF02861 Clp amino terminal domain, pathogenicity island component ATY48_06370 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_06385 PF01527 Transposase ATY48_06400 PF00593 TonB dependent receptor ATY48_06400 PF07715 TonB-dependent Receptor Plug Domain ATY48_06420 PF12557 Cob(I)alamin adenosyltransferase N terminal ATY48_06420 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ATY48_06430 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ATY48_06435 PF02277 Phosphoribosyltransferase ATY48_06445 PF02654 Cobalamin-5-phosphate synthase ATY48_06450 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY48_06450 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATY48_06465 PF06276 Ferric iron reductase FhuF-like transporter ATY48_06465 PF04183 IucA / IucC family ATY48_06475 PF00593 TonB dependent receptor ATY48_06475 PF07715 TonB-dependent Receptor Plug Domain ATY48_06475 PF07660 Secretin and TonB N terminus short domain ATY48_06485 PF13683 Integrase core domain ATY48_06485 PF13276 HTH-like domain ATY48_06490 PF00999 Sodium/hydrogen exchanger family ATY48_06490 PF02254 TrkA-N domain ATY48_06500 PF00593 TonB dependent receptor ATY48_06500 PF07715 TonB-dependent Receptor Plug Domain ATY48_06505 PF00593 TonB dependent receptor ATY48_06505 PF07715 TonB-dependent Receptor Plug Domain ATY48_06515 PF00593 TonB dependent receptor ATY48_06515 PF07715 TonB-dependent Receptor Plug Domain ATY48_06520 PF12848 ABC transporter ATY48_06520 PF00005 ABC transporter ATY48_06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_06530 PF03466 LysR substrate binding domain ATY48_06540 PF13472 GDSL-like Lipase/Acylhydrolase family ATY48_06540 PF07859 alpha/beta hydrolase fold ATY48_06565 PF12833 Helix-turn-helix domain ATY48_06570 PF00183 Hsp90 protein ATY48_06570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_06585 PF13276 HTH-like domain ATY48_06590 PF01527 Transposase ATY48_06600 PF00872 Transposase, Mutator family ATY48_06615 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY48_06630 PF13683 Integrase core domain ATY48_06630 PF13276 HTH-like domain ATY48_06635 PF01527 Transposase ATY48_06640 PF01609 Transposase DDE domain ATY48_06640 PF05598 Transposase domain (DUF772) ATY48_06645 PF00355 Rieske [2Fe-2S] domain ATY48_06655 PF00266 Aminotransferase class-V ATY48_06660 PF01458 Uncharacterized protein family (UPF0051) ATY48_06665 PF00005 ABC transporter ATY48_06670 PF01458 Uncharacterized protein family (UPF0051) ATY48_06675 PF02082 Transcriptional regulator ATY48_06725 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATY48_06725 PF03807 NADP oxidoreductase coenzyme F420-dependent ATY48_06730 PF01168 Alanine racemase, N-terminal domain ATY48_06735 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_06745 PF00437 Type II/IV secretion system protein ATY48_06750 PF00437 Type II/IV secretion system protein ATY48_06765 PF13673 Acetyltransferase (GNAT) domain ATY48_06765 PF13302 Acetyltransferase (GNAT) domain ATY48_06765 PF03352 Methyladenine glycosylase ATY48_06765 PF00117 Glutamine amidotransferase class-I ATY48_06765 PF00958 GMP synthase C terminal domain ATY48_06780 PF02622 Uncharacterized ACR, COG1678 ATY48_06785 PF03652 Holliday junction resolvase ATY48_06790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY48_06790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY48_06795 PF02566 OsmC-like protein ATY48_06805 PF02567 Phenazine biosynthesis-like protein ATY48_06810 PF02567 Phenazine biosynthesis-like protein ATY48_06815 PF02567 Phenazine biosynthesis-like protein ATY48_06820 PF00696 Amino acid kinase family ATY48_06820 PF01842 ACT domain ATY48_06835 PF08245 Mur ligase middle domain ATY48_06850 PF00348 Polyprenyl synthetase ATY48_06855 PF00436 Single-strand binding protein family ATY48_06860 PF00360 Phytochrome region ATY48_06860 PF01590 GAF domain ATY48_06860 PF00563 EAL domain ATY48_06860 PF00990 Diguanylate cyclase, GGDEF domain ATY48_06865 PF08659 KR domain ATY48_06865 PF00550 Phosphopantetheine attachment site ATY48_06865 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY48_06865 PF16197 Ketoacyl-synthetase C-terminal extension ATY48_06865 PF00107 Zinc-binding dehydrogenase ATY48_06865 PF14765 Polyketide synthase dehydratase ATY48_06865 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_06865 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY48_06865 PF00698 Acyl transferase domain ATY48_06895 PF04328 Selenoprotein, putative ATY48_06900 PF13722 5TM C-terminal transporter carbon starvation CstA ATY48_06900 PF02554 Carbon starvation protein CstA ATY48_06905 PF05726 Pirin C-terminal cupin domain ATY48_06905 PF02678 Pirin ATY48_06915 PF04717 Type VI secretion system, phage-baseplate injector ATY48_06940 PF04717 Type VI secretion system, phage-baseplate injector ATY48_06950 PF05598 Transposase domain (DUF772) ATY48_06985 PF02678 Pirin ATY48_06985 PF05726 Pirin C-terminal cupin domain ATY48_06995 PF04493 Endonuclease V ATY48_07000 PF00300 Histidine phosphatase superfamily (branch 1) ATY48_07010 PF01431 Peptidase family M13 ATY48_07010 PF05649 Peptidase family M13 ATY48_07020 PF01339 CheB methylesterase ATY48_07020 PF00072 Response regulator receiver domain ATY48_07025 PF01739 CheR methyltransferase, SAM binding domain ATY48_07025 PF03705 CheR methyltransferase, all-alpha domain ATY48_07030 PF00990 Diguanylate cyclase, GGDEF domain ATY48_07030 PF00563 EAL domain ATY48_07030 PF13426 PAS domain ATY48_07035 PF01584 CheW-like domain ATY48_07040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_07040 PF02203 Tar ligand binding domain homologue ATY48_07040 PF00672 HAMP domain ATY48_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_07045 PF09078 CheY binding ATY48_07045 PF01627 Hpt domain ATY48_07045 PF02895 Signal transducing histidine kinase, homodimeric domain ATY48_07045 PF01584 CheW-like domain ATY48_07055 PF00271 Helicase conserved C-terminal domain ATY48_07055 PF00270 DEAD/DEAH box helicase ATY48_07055 PF02559 CarD-like/TRCF domain ATY48_07055 PF03461 TRCF domain ATY48_07055 PF17757 UvrB interaction domain ATY48_07065 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ATY48_07075 PF00672 HAMP domain ATY48_07075 PF00512 His Kinase A (phospho-acceptor) domain ATY48_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_07100 PF01609 Transposase DDE domain ATY48_07100 PF05598 Transposase domain (DUF772) ATY48_07120 PF05598 Transposase domain (DUF772) ATY48_07120 PF01609 Transposase DDE domain ATY48_07155 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY48_07160 PF01475 Ferric uptake regulator family ATY48_07185 PF00313 'Cold-shock' DNA-binding domain ATY48_07200 PF00899 ThiF family ATY48_07205 PF01026 TatD related DNase ATY48_07220 PF02770 Acyl-CoA dehydrogenase, middle domain ATY48_07220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_07220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_07240 PF13417 Glutathione S-transferase, N-terminal domain ATY48_07245 PF00733 Asparagine synthase ATY48_07245 PF13537 Glutamine amidotransferase domain ATY48_07250 PF03358 NADPH-dependent FMN reductase ATY48_07255 PF00772 DnaB-like helicase N terminal domain ATY48_07255 PF03796 DnaB-like helicase C terminal domain ATY48_07260 PF00875 DNA photolyase ATY48_07260 PF03441 FAD binding domain of DNA photolyase ATY48_07270 PF00691 OmpA family ATY48_07270 PF05736 OprF membrane domain ATY48_07290 PF00593 TonB dependent receptor ATY48_07290 PF07715 TonB-dependent Receptor Plug Domain ATY48_07310 PF00107 Zinc-binding dehydrogenase ATY48_07310 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_07315 PF00654 Voltage gated chloride channel ATY48_07325 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATY48_07325 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATY48_07330 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY48_07330 PF02805 Metal binding domain of Ada ATY48_07330 PF06029 AlkA N-terminal domain ATY48_07330 PF12833 Helix-turn-helix domain ATY48_07375 PF00271 Helicase conserved C-terminal domain ATY48_07375 PF00270 DEAD/DEAH box helicase ATY48_07375 PF03880 DbpA RNA binding domain ATY48_07380 PF00563 EAL domain ATY48_07380 PF08448 PAS fold ATY48_07380 PF00990 Diguanylate cyclase, GGDEF domain ATY48_07385 PF00849 RNA pseudouridylate synthase ATY48_07385 PF01479 S4 domain ATY48_07400 PF03737 Aldolase/RraA ATY48_07405 PF00144 Beta-lactamase ATY48_07410 PF00999 Sodium/hydrogen exchanger family ATY48_07415 PF00512 His Kinase A (phospho-acceptor) domain ATY48_07415 PF00672 HAMP domain ATY48_07415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_07420 PF00072 Response regulator receiver domain ATY48_07420 PF00486 Transcriptional regulatory protein, C terminal ATY48_07425 PF02321 Outer membrane efflux protein ATY48_07440 PF00873 AcrB/AcrD/AcrF family ATY48_07450 PF00005 ABC transporter ATY48_07450 PF00664 ABC transporter transmembrane region ATY48_07460 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_07470 PF05598 Transposase domain (DUF772) ATY48_07470 PF01609 Transposase DDE domain ATY48_07480 PF01609 Transposase DDE domain ATY48_07480 PF05598 Transposase domain (DUF772) ATY48_07490 PF01609 Transposase DDE domain ATY48_07490 PF05598 Transposase domain (DUF772) ATY48_07510 PF01121 Dephospho-CoA kinase ATY48_07515 PF06750 Bacterial Peptidase A24 N-terminal domain ATY48_07515 PF01478 Type IV leader peptidase family ATY48_07520 PF00482 Type II secretion system (T2SS), protein F ATY48_07525 PF00114 Pilin (bacterial filament) ATY48_07525 PF07963 Prokaryotic N-terminal methylation motif ATY48_07530 PF00884 Sulfatase ATY48_07530 PF08019 Phosphoethanolamine transferase EptA/EptB ATY48_07545 PF00437 Type II/IV secretion system protein ATY48_07545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY48_07550 PF18543 Intracellular delivery domain ATY48_07550 PF02661 Fic/DOC family ATY48_07555 PF02954 Bacterial regulatory protein, Fis family ATY48_07555 PF00072 Response regulator receiver domain ATY48_07555 PF00158 Sigma-54 interaction domain ATY48_07560 PF00512 His Kinase A (phospho-acceptor) domain ATY48_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_07565 PF00549 CoA-ligase ATY48_07565 PF08442 ATP-grasp domain ATY48_07570 PF02629 CoA binding domain ATY48_07570 PF00549 CoA-ligase ATY48_07580 PF00795 Carbon-nitrogen hydrolase ATY48_07580 PF02540 NAD synthase ATY48_07585 PF13525 Outer membrane lipoprotein ATY48_07590 PF00849 RNA pseudouridylate synthase ATY48_07610 PF00982 Glycosyltransferase family 20 ATY48_07615 PF00723 Glycosyl hydrolases family 15 ATY48_07620 PF02358 Trehalose-phosphatase ATY48_07630 PF07715 TonB-dependent Receptor Plug Domain ATY48_07630 PF00593 TonB dependent receptor ATY48_07660 PF04376 Arginine-tRNA-protein transferase, N terminus ATY48_07660 PF04377 Arginine-tRNA-protein transferase, C terminus ATY48_07680 PF08281 Sigma-70, region 4 ATY48_07680 PF04542 Sigma-70 region 2 ATY48_07695 PF00378 Enoyl-CoA hydratase/isomerase ATY48_07710 PF17755 UvrA DNA-binding domain ATY48_07710 PF00005 ABC transporter ATY48_07710 PF17760 UvrA interaction domain ATY48_07715 PF00829 Ribosomal prokaryotic L21 protein ATY48_07720 PF01016 Ribosomal L27 protein ATY48_07725 PF01926 50S ribosome-binding GTPase ATY48_07725 PF01018 GTP1/OBG ATY48_07730 PF01649 Ribosomal protein S20 ATY48_07735 PF03023 Lipid II flippase MurJ ATY48_07740 PF06574 FAD synthetase ATY48_07740 PF01687 Riboflavin kinase ATY48_07745 PF00133 tRNA synthetases class I (I, L, M and V) ATY48_07745 PF08264 Anticodon-binding domain of tRNA ATY48_07745 PF06827 Zinc finger found in FPG and IleRS ATY48_07750 PF01252 Signal peptidase (SPase) II ATY48_07755 PF02401 LytB protein ATY48_07765 PF06481 COX Aromatic Rich Motif ATY48_07765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY48_07770 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY48_07775 PF00510 Cytochrome c oxidase subunit III ATY48_07780 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ATY48_07790 PF04717 Type VI secretion system, phage-baseplate injector ATY48_07800 PF05593 RHS Repeat ATY48_07800 PF03527 RHS protein ATY48_07800 PF14220 Domain of unknown function (DUF4329) ATY48_07815 PF01527 Transposase ATY48_07820 PF13683 Integrase core domain ATY48_07820 PF13276 HTH-like domain ATY48_07835 PF01624 MutS domain I ATY48_07835 PF05188 MutS domain II ATY48_07835 PF05192 MutS domain III ATY48_07835 PF05190 MutS family domain IV ATY48_07835 PF00488 MutS domain V ATY48_07845 PF13276 HTH-like domain ATY48_07845 PF13683 Integrase core domain ATY48_07850 PF01527 Transposase ATY48_07860 PF18073 Rubredoxin metal binding domain ATY48_07870 PF01527 Transposase ATY48_07880 PF05506 Domain of unknown function (DUF756) ATY48_07880 PF04185 Phosphoesterase family ATY48_07885 PF05506 Domain of unknown function (DUF756) ATY48_07885 PF04185 Phosphoesterase family ATY48_07890 PF04185 Phosphoesterase family ATY48_07890 PF05506 Domain of unknown function (DUF756) ATY48_07910 PF02938 GAD domain ATY48_07910 PF00152 tRNA synthetases class II (D, K and N) ATY48_07910 PF01336 OB-fold nucleic acid binding domain ATY48_07925 PF01709 Transcriptional regulator ATY48_07930 PF02075 Crossover junction endodeoxyribonuclease RuvC ATY48_07935 PF07499 RuvA, C-terminal domain ATY48_07935 PF01330 RuvA N terminal domain ATY48_07940 PF02705 K+ potassium transporter ATY48_07945 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATY48_07945 PF17864 RuvB AAA lid domain ATY48_07945 PF05491 RuvB C-terminal winged helix domain ATY48_07950 PF03061 Thioesterase superfamily ATY48_07955 PF01618 MotA/TolQ/ExbB proton channel family ATY48_07960 PF02472 Biopolymer transport protein ExbD/TolR ATY48_07970 PF07676 WD40-like Beta Propeller Repeat ATY48_07970 PF04052 TolB amino-terminal domain ATY48_07975 PF00691 OmpA family ATY48_07985 PF04055 Radical SAM superfamily ATY48_07990 PF00849 RNA pseudouridylate synthase ATY48_07990 PF01479 S4 domain ATY48_08035 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_08040 PF05598 Transposase domain (DUF772) ATY48_08045 PF06508 Queuosine biosynthesis protein QueC ATY48_08065 PF00270 DEAD/DEAH box helicase ATY48_08065 PF16124 RecQ zinc-binding ATY48_08065 PF00570 HRDC domain ATY48_08065 PF09382 RQC domain ATY48_08065 PF00271 Helicase conserved C-terminal domain ATY48_08070 PF00210 Ferritin-like domain ATY48_08075 PF04408 Helicase associated domain (HA2) ATY48_08075 PF11898 Domain of unknown function (DUF3418) ATY48_08075 PF00271 Helicase conserved C-terminal domain ATY48_08075 PF00270 DEAD/DEAH box helicase ATY48_08075 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ATY48_08085 PF02685 Glucokinase ATY48_08090 PF02685 Glucokinase ATY48_08095 PF02685 Glucokinase ATY48_08105 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_08120 PF04055 Radical SAM superfamily ATY48_08120 PF13186 Iron-sulfur cluster-binding domain ATY48_08125 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ATY48_08130 PF03070 TENA/THI-4/PQQC family ATY48_08135 PF12706 Beta-lactamase superfamily domain ATY48_08140 PF02824 TGS domain ATY48_08140 PF04607 Region found in RelA / SpoT proteins ATY48_08140 PF13291 ACT domain ATY48_08150 PF00535 Glycosyl transferase family 2 ATY48_08155 PF14814 Bifunctional transglycosylase second domain ATY48_08155 PF00905 Penicillin binding protein transpeptidase domain ATY48_08155 PF00912 Transglycosylase ATY48_08165 PF04851 Type III restriction enzyme, res subunit ATY48_08165 PF13307 Helicase C-terminal domain ATY48_08170 PF00814 Glycoprotease family ATY48_08175 PF03747 ADP-ribosylglycohydrolase ATY48_08185 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ATY48_08185 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ATY48_08190 PF00072 Response regulator receiver domain ATY48_08195 PF00072 Response regulator receiver domain ATY48_08200 PF01584 CheW-like domain ATY48_08205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_08205 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ATY48_08210 PF00072 Response regulator receiver domain ATY48_08210 PF01627 Hpt domain ATY48_08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_08210 PF01584 CheW-like domain ATY48_08225 PF13302 Acetyltransferase (GNAT) domain ATY48_08240 PF12450 von Willebrand factor ATY48_08240 PF00092 von Willebrand factor type A domain ATY48_08240 PF12034 Domain of unknown function (DUF3520) ATY48_08255 PF01112 Asparaginase ATY48_08260 PF03932 CutC family ATY48_08305 PF01301 Glycosyl hydrolases family 35 ATY48_08310 PF17678 Glycosyl hydrolase family 92 N-terminal domain ATY48_08310 PF07971 Glycosyl hydrolase family 92 ATY48_08365 PF00664 ABC transporter transmembrane region ATY48_08365 PF03412 Peptidase C39 family ATY48_08365 PF00005 ABC transporter ATY48_08370 PF14310 Fibronectin type III-like domain ATY48_08370 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_08370 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY48_08370 PF07691 PA14 domain ATY48_08380 PF07691 PA14 domain ATY48_08380 PF00728 Glycosyl hydrolase family 20, catalytic domain ATY48_08380 PF02838 Glycosyl hydrolase family 20, domain 2 ATY48_08385 PF00704 Glycosyl hydrolases family 18 ATY48_08385 PF01476 LysM domain ATY48_08400 PF02685 Glucokinase ATY48_08405 PF04452 RNA methyltransferase ATY48_08410 PF00202 Aminotransferase class-III ATY48_08415 PF00293 NUDIX domain ATY48_08420 PF00459 Inositol monophosphatase family ATY48_08425 PF03819 MazG nucleotide pyrophosphohydrolase domain ATY48_08435 PF01145 SPFH domain / Band 7 family ATY48_08435 PF16200 C-terminal region of band_7 ATY48_08445 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATY48_08445 PF01571 Aminomethyltransferase folate-binding domain ATY48_08450 PF01597 Glycine cleavage H-protein ATY48_08475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_08475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_08475 PF09317 Domain of unknown function (DUF1974) ATY48_08485 PF00440 Bacterial regulatory proteins, tetR family ATY48_08490 PF07715 TonB-dependent Receptor Plug Domain ATY48_08490 PF00593 TonB dependent receptor ATY48_08500 PF01430 Hsp33 protein ATY48_08505 PF00912 Transglycosylase ATY48_08510 PF00535 Glycosyl transferase family 2 ATY48_08515 PF00478 IMP dehydrogenase / GMP reductase domain ATY48_08515 PF00571 CBS domain ATY48_08525 PF03006 Haemolysin-III related ATY48_08530 PF16658 Class II release factor RF3, C-terminal domain ATY48_08530 PF00009 Elongation factor Tu GTP binding domain ATY48_08535 PF01551 Peptidase family M23 ATY48_08535 PF08525 Opacity-associated protein A N-terminal motif ATY48_08535 PF01476 LysM domain ATY48_08540 PF00561 alpha/beta hydrolase fold ATY48_08545 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY48_08555 PF03313 Serine dehydratase alpha chain ATY48_08555 PF03315 Serine dehydratase beta chain ATY48_08565 PF04264 YceI-like domain ATY48_08575 PF04264 YceI-like domain ATY48_08580 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY48_08580 PF00672 HAMP domain ATY48_08580 PF00512 His Kinase A (phospho-acceptor) domain ATY48_08580 PF01627 Hpt domain ATY48_08580 PF00072 Response regulator receiver domain ATY48_08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_08585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_08585 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY48_08585 PF00512 His Kinase A (phospho-acceptor) domain ATY48_08585 PF01627 Hpt domain ATY48_08585 PF00072 Response regulator receiver domain ATY48_08585 PF00672 HAMP domain ATY48_08590 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY48_08590 PF00072 Response regulator receiver domain ATY48_08590 PF01627 Hpt domain ATY48_08590 PF00512 His Kinase A (phospho-acceptor) domain ATY48_08590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_08590 PF00672 HAMP domain ATY48_08625 PF07745 Glycosyl hydrolase family 53 ATY48_08640 PF06114 IrrE N-terminal-like domain ATY48_08640 PF01381 Helix-turn-helix ATY48_08640 PF09856 Predicted transcriptional regulator (DUF2083) ATY48_08645 PF00171 Aldehyde dehydrogenase family ATY48_08650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_08650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_08650 PF02770 Acyl-CoA dehydrogenase, middle domain ATY48_08655 PF00378 Enoyl-CoA hydratase/isomerase ATY48_08660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY48_08660 PF00378 Enoyl-CoA hydratase/isomerase ATY48_08660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY48_08665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY48_08665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY48_08670 PF01545 Cation efflux family ATY48_08675 PF00378 Enoyl-CoA hydratase/isomerase ATY48_08675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY48_08675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY48_08680 PF04542 Sigma-70 region 2 ATY48_08680 PF08281 Sigma-70, region 4 ATY48_08690 PF13180 PDZ domain ATY48_08695 PF03144 Elongation factor Tu domain 2 ATY48_08695 PF00009 Elongation factor Tu GTP binding domain ATY48_08695 PF06421 GTP-binding protein LepA C-terminus ATY48_08695 PF00679 Elongation factor G C-terminus ATY48_08700 PF10502 Signal peptidase, peptidase S26 ATY48_08710 PF14622 Ribonuclease-III-like ATY48_08710 PF00035 Double-stranded RNA binding motif ATY48_08715 PF07650 KH domain ATY48_08715 PF01926 50S ribosome-binding GTPase ATY48_08720 PF11967 Recombination protein O N terminal ATY48_08720 PF02565 Recombination protein O C terminal ATY48_08730 PF05958 tRNA (Uracil-5-)-methyltransferase ATY48_08745 PF05598 Transposase domain (DUF772) ATY48_08750 PF01323 DSBA-like thioredoxin domain ATY48_08755 PF01593 Flavin containing amine oxidoreductase ATY48_08760 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ATY48_08765 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_08775 PF01048 Phosphorylase superfamily ATY48_08780 PF00313 'Cold-shock' DNA-binding domain ATY48_08785 PF01494 FAD binding domain ATY48_08795 PF01494 FAD binding domain ATY48_08805 PF00271 Helicase conserved C-terminal domain ATY48_08805 PF00270 DEAD/DEAH box helicase ATY48_08805 PF08494 DEAD/H associated ATY48_08810 PF04675 DNA ligase N terminus ATY48_08810 PF01068 ATP dependent DNA ligase domain ATY48_08810 PF04679 ATP dependent DNA ligase C terminal region ATY48_08820 PF04675 DNA ligase N terminus ATY48_08820 PF04679 ATP dependent DNA ligase C terminal region ATY48_08820 PF01068 ATP dependent DNA ligase domain ATY48_08835 PF00072 Response regulator receiver domain ATY48_08835 PF00990 Diguanylate cyclase, GGDEF domain ATY48_08850 PF02803 Thiolase, C-terminal domain ATY48_08850 PF00108 Thiolase, N-terminal domain ATY48_08855 PF00082 Subtilase family ATY48_08855 PF12951 Passenger-associated-transport-repeat ATY48_08855 PF03797 Autotransporter beta-domain ATY48_08860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATY48_08860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATY48_08865 PF01863 Protein of unknown function DUF45 ATY48_08875 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY48_08910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY48_08925 PF03831 PhnA domain ATY48_08925 PF08274 PhnA Zinc-Ribbon ATY48_08935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY48_08940 PF07690 Major Facilitator Superfamily ATY48_08990 PF09924 Uncharacterised conserved protein (DUF2156) ATY48_08990 PF03706 Lysylphosphatidylglycerol synthase TM region ATY48_09000 PF01042 Endoribonuclease L-PSP ATY48_09045 PF04545 Sigma-70, region 4 ATY48_09045 PF04542 Sigma-70 region 2 ATY48_09065 PF04060 Putative Fe-S cluster ATY48_09075 PF09334 tRNA synthetases class I (M) ATY48_09075 PF01588 Putative tRNA binding domain ATY48_09095 PF00324 Amino acid permease ATY48_09100 PF02574 Homocysteine S-methyltransferase ATY48_09110 PF02592 Putative vitamin uptake transporter ATY48_09125 PF05598 Transposase domain (DUF772) ATY48_09200 PF00005 ABC transporter ATY48_09200 PF13732 Domain of unknown function (DUF4162) ATY48_09205 PF00593 TonB dependent receptor ATY48_09205 PF07715 TonB-dependent Receptor Plug Domain ATY48_09215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ATY48_09220 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY48_09220 PF01336 OB-fold nucleic acid binding domain ATY48_09220 PF02811 PHP domain ATY48_09220 PF14579 Helix-hairpin-helix motif ATY48_09220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY48_09225 PF01351 Ribonuclease HII ATY48_09230 PF02684 Lipid-A-disaccharide synthetase ATY48_09235 PF00132 Bacterial transferase hexapeptide (six repeats) ATY48_09235 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ATY48_09240 PF07977 FabA-like domain ATY48_09245 PF00132 Bacterial transferase hexapeptide (six repeats) ATY48_09245 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ATY48_09250 PF01103 Surface antigen ATY48_09250 PF07244 Surface antigen variable number repeat ATY48_09255 PF17820 PDZ domain ATY48_09255 PF02163 Peptidase family M50 ATY48_09260 PF13288 DXP reductoisomerase C-terminal domain ATY48_09260 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATY48_09260 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATY48_09270 PF01255 Putative undecaprenyl diphosphate synthase ATY48_09275 PF01765 Ribosome recycling factor ATY48_09280 PF00696 Amino acid kinase family ATY48_09290 PF00889 Elongation factor TS ATY48_09295 PF00318 Ribosomal protein S2 ATY48_09330 PF00557 Metallopeptidase family M24 ATY48_09335 PF08335 GlnD PII-uridylyltransferase ATY48_09335 PF01966 HD domain ATY48_09335 PF01909 Nucleotidyltransferase domain ATY48_09340 PF14602 Hexapeptide repeat of succinyl-transferase ATY48_09340 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ATY48_09340 PF00132 Bacterial transferase hexapeptide (six repeats) ATY48_09350 PF03960 ArsC family ATY48_09360 PF07687 Peptidase dimerisation domain ATY48_09360 PF01546 Peptidase family M20/M25/M40 ATY48_09365 PF00733 Asparagine synthase ATY48_09365 PF13537 Glutamine amidotransferase domain ATY48_09380 PF07715 TonB-dependent Receptor Plug Domain ATY48_09380 PF00593 TonB dependent receptor ATY48_09385 PF01804 Penicillin amidase ATY48_09390 PF00210 Ferritin-like domain ATY48_09395 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY48_09395 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY48_09410 PF02321 Outer membrane efflux protein ATY48_09415 PF00529 HlyD membrane-fusion protein of T1SS ATY48_09415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_09420 PF07690 Major Facilitator Superfamily ATY48_09455 PF13936 Helix-turn-helix domain ATY48_09455 PF00665 Integrase core domain ATY48_09475 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATY48_09475 PF02780 Transketolase, C-terminal domain ATY48_09475 PF02779 Transketolase, pyrimidine binding domain ATY48_09485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_09485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_09485 PF12806 Acetyl-CoA dehydrogenase C-terminal like ATY48_09485 PF02770 Acyl-CoA dehydrogenase, middle domain ATY48_09505 PF01668 SmpB protein ATY48_09510 PF03364 Polyketide cyclase / dehydrase and lipid transport ATY48_09515 PF03658 RnfH family Ubiquitin ATY48_09520 PF04355 SmpA / OmlA family ATY48_09525 PF01475 Ferric uptake regulator family ATY48_09530 PF02463 RecF/RecN/SMC N terminal domain ATY48_09535 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ATY48_09535 PF01628 HrcA protein C terminal domain ATY48_09540 PF01025 GrpE ATY48_09545 PF00012 Hsp70 protein ATY48_09550 PF00226 DnaJ domain ATY48_09550 PF01556 DnaJ C terminal domain ATY48_09550 PF00684 DnaJ central domain ATY48_09555 PF08543 Phosphomethylpyrimidine kinase ATY48_09560 PF01817 Chorismate mutase type II ATY48_09560 PF02153 Prephenate dehydrogenase ATY48_09575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_09575 PF03466 LysR substrate binding domain ATY48_09580 PF00664 ABC transporter transmembrane region ATY48_09580 PF00005 ABC transporter ATY48_09585 PF01205 Uncharacterized protein family UPF0029 ATY48_09590 PF03641 Possible lysine decarboxylase ATY48_09595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY48_09595 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_09600 PF02817 e3 binding domain ATY48_09600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY48_09600 PF00364 Biotin-requiring enzyme ATY48_09605 PF02779 Transketolase, pyrimidine binding domain ATY48_09605 PF16078 2-oxoglutarate dehydrogenase N-terminus ATY48_09605 PF16870 2-oxoglutarate dehydrogenase C-terminal ATY48_09605 PF00676 Dehydrogenase E1 component ATY48_09615 PF08007 Cupin superfamily protein ATY48_09630 PF00206 Lyase ATY48_09630 PF08328 Adenylosuccinate lyase C-terminal ATY48_09650 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_09660 PF00665 Integrase core domain ATY48_09660 PF13936 Helix-turn-helix domain ATY48_09670 PF10415 Fumarase C C-terminus ATY48_09670 PF00206 Lyase ATY48_09700 PF00005 ABC transporter ATY48_09705 PF00392 Bacterial regulatory proteins, gntR family ATY48_09715 PF00255 Glutathione peroxidase ATY48_09720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY48_09720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY48_09725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY48_09725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY48_09725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY48_09730 PF04102 SlyX ATY48_09750 PF07690 Major Facilitator Superfamily ATY48_09755 PF00294 pfkB family carbohydrate kinase ATY48_09765 PF02574 Homocysteine S-methyltransferase ATY48_09765 PF00809 Pterin binding enzyme ATY48_09765 PF02965 Vitamin B12 dependent methionine synthase, activation domain ATY48_09765 PF02607 B12 binding domain ATY48_09765 PF02310 B12 binding domain ATY48_09770 PF00809 Pterin binding enzyme ATY48_09770 PF02574 Homocysteine S-methyltransferase ATY48_09775 PF01209 ubiE/COQ5 methyltransferase family ATY48_09780 PF02770 Acyl-CoA dehydrogenase, middle domain ATY48_09780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_09780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_09800 PF08461 Ribonuclease R winged-helix domain ATY48_09800 PF08206 Ribonuclease B OB domain ATY48_09800 PF17876 Cold shock domain ATY48_09800 PF00575 S1 RNA binding domain ATY48_09800 PF00773 RNB domain ATY48_09820 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY48_09820 PF00588 SpoU rRNA Methylase family ATY48_09830 PF05598 Transposase domain (DUF772) ATY48_09830 PF01609 Transposase DDE domain ATY48_09845 PF00872 Transposase, Mutator family ATY48_09855 PF00313 'Cold-shock' DNA-binding domain ATY48_09860 PF00561 alpha/beta hydrolase fold ATY48_09870 PF01609 Transposase DDE domain ATY48_09870 PF05598 Transposase domain (DUF772) ATY48_09880 PF01609 Transposase DDE domain ATY48_09880 PF05598 Transposase domain (DUF772) ATY48_09900 PF05598 Transposase domain (DUF772) ATY48_09900 PF01609 Transposase DDE domain ATY48_09935 PF01609 Transposase DDE domain ATY48_09935 PF05598 Transposase domain (DUF772) ATY48_09950 PF05598 Transposase domain (DUF772) ATY48_09955 PF13276 HTH-like domain ATY48_09955 PF13683 Integrase core domain ATY48_09960 PF01527 Transposase ATY48_09970 PF03544 Gram-negative bacterial TonB protein C-terminal ATY48_09975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY48_09975 PF02403 Seryl-tRNA synthetase N-terminal domain ATY48_09990 PF05598 Transposase domain (DUF772) ATY48_09990 PF01609 Transposase DDE domain ATY48_09995 PF02525 Flavodoxin-like fold ATY48_10000 PF03466 LysR substrate binding domain ATY48_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_10015 PF03377 TAL effector repeat ATY48_10030 PF03377 TAL effector repeat ATY48_10050 PF03377 TAL effector repeat ATY48_10075 PF03079 ARD/ARD' family ATY48_10080 PF00596 Class II Aldolase and Adducin N-terminal domain ATY48_10085 PF13520 Amino acid permease ATY48_10090 PF13520 Amino acid permease ATY48_10100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY48_10100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY48_10105 PF02913 FAD linked oxidases, C-terminal domain ATY48_10105 PF01565 FAD binding domain ATY48_10140 PF03918 Cytochrome C biogenesis protein ATY48_10145 PF08534 Redoxin ATY48_10150 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY48_10150 PF01578 Cytochrome C assembly protein ATY48_10155 PF03100 CcmE ATY48_10165 PF01578 Cytochrome C assembly protein ATY48_10170 PF03379 CcmB protein ATY48_10175 PF00005 ABC transporter ATY48_10180 PF00155 Aminotransferase class I and II ATY48_10185 PF00795 Carbon-nitrogen hydrolase ATY48_10205 PF01479 S4 domain ATY48_10205 PF00849 RNA pseudouridylate synthase ATY48_10210 PF04079 Segregation and condensation complex subunit ScpB ATY48_10215 PF02616 Segregation and condensation protein ScpA ATY48_10220 PF03795 YCII-related domain ATY48_10230 PF00356 Bacterial regulatory proteins, lacI family ATY48_10250 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_10255 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_10280 PF00795 Carbon-nitrogen hydrolase ATY48_10285 PF04371 Porphyromonas-type peptidyl-arginine deiminase ATY48_10295 PF00444 Ribosomal protein L36 ATY48_10300 PF02224 Cytidylate kinase ATY48_10305 PF00575 S1 RNA binding domain ATY48_10310 PF00216 Bacterial DNA-binding protein ATY48_10320 PF18073 Rubredoxin metal binding domain ATY48_10325 PF00953 Glycosyl transferase family 4 ATY48_10330 PF02719 Polysaccharide biosynthesis protein ATY48_10335 PF00483 Nucleotidyl transferase ATY48_10340 PF00999 Sodium/hydrogen exchanger family ATY48_10340 PF02254 TrkA-N domain ATY48_10375 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATY48_10375 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATY48_10380 PF00478 IMP dehydrogenase / GMP reductase domain ATY48_10380 PF00571 CBS domain ATY48_10385 PF00117 Glutamine amidotransferase class-I ATY48_10385 PF00958 GMP synthase C terminal domain ATY48_10385 PF02540 NAD synthase ATY48_10390 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ATY48_10395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY48_10395 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ATY48_10395 PF00361 Proton-conducting membrane transporter ATY48_10400 PF03466 LysR substrate binding domain ATY48_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_10415 PF03601 Conserved hypothetical protein 698 ATY48_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_10420 PF03466 LysR substrate binding domain ATY48_10425 PF03466 LysR substrate binding domain ATY48_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_10440 PF01566 Natural resistance-associated macrophage protein ATY48_10445 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATY48_10445 PF01325 Iron dependent repressor, N-terminal DNA binding domain ATY48_10450 PF14437 MafB19-like deaminase ATY48_10455 PF00929 Exonuclease ATY48_10460 PF05552 Conserved TM helix ATY48_10460 PF00924 Mechanosensitive ion channel ATY48_10465 PF00391 PEP-utilising enzyme, mobile domain ATY48_10465 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATY48_10465 PF02896 PEP-utilising enzyme, TIM barrel domain ATY48_10470 PF03618 Kinase/pyrophosphorylase ATY48_10505 PF01066 CDP-alcohol phosphatidyltransferase ATY48_10515 PF00561 alpha/beta hydrolase fold ATY48_10530 PF01266 FAD dependent oxidoreductase ATY48_10530 PF00355 Rieske [2Fe-2S] domain ATY48_10540 PF00575 S1 RNA binding domain ATY48_10540 PF09371 Tex-like protein N-terminal domain ATY48_10540 PF17674 HHH domain ATY48_10540 PF16921 Tex protein YqgF-like domain ATY48_10550 PF00072 Response regulator receiver domain ATY48_10560 PF04551 GcpE protein ATY48_10565 PF01569 PAP2 superfamily ATY48_10575 PF07690 Major Facilitator Superfamily ATY48_10585 PF01177 Asp/Glu/Hydantoin racemase ATY48_10590 PF00892 EamA-like transporter family ATY48_10595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATY48_10595 PF01565 FAD binding domain ATY48_10600 PF01180 Dihydroorotate dehydrogenase ATY48_10615 PF00171 Aldehyde dehydrogenase family ATY48_10625 PF03073 TspO/MBR family ATY48_10630 PF13840 ACT domain ATY48_10630 PF01842 ACT domain ATY48_10630 PF00696 Amino acid kinase family ATY48_10630 PF00742 Homoserine dehydrogenase ATY48_10630 PF03447 Homoserine dehydrogenase, NAD binding domain ATY48_10635 PF08544 GHMP kinases C terminal ATY48_10635 PF00288 GHMP kinases N terminal domain ATY48_10650 PF14821 Threonine synthase N terminus ATY48_10650 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_10665 PF13393 Histidyl-tRNA synthetase ATY48_10665 PF03129 Anticodon binding domain ATY48_10680 PF08029 HisG, C-terminal domain ATY48_10680 PF01634 ATP phosphoribosyltransferase ATY48_10685 PF00815 Histidinol dehydrogenase ATY48_10690 PF00155 Aminotransferase class I and II ATY48_10695 PF00475 Imidazoleglycerol-phosphate dehydratase ATY48_10700 PF00117 Glutamine amidotransferase class-I ATY48_10705 PF00977 Histidine biosynthesis protein ATY48_10710 PF00977 Histidine biosynthesis protein ATY48_10715 PF01502 Phosphoribosyl-AMP cyclohydrolase ATY48_10715 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATY48_10725 PF03377 TAL effector repeat ATY48_10740 PF03377 TAL effector repeat ATY48_10830 PF02303 Helix-destabilising protein ATY48_10860 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_10880 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_10890 PF03377 TAL effector repeat ATY48_10905 PF03377 TAL effector repeat ATY48_10910 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_10930 PF03377 TAL effector repeat ATY48_10960 PF01609 Transposase DDE domain ATY48_10960 PF05598 Transposase domain (DUF772) ATY48_10980 PF00872 Transposase, Mutator family ATY48_10990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY48_11010 PF01066 CDP-alcohol phosphatidyltransferase ATY48_11015 PF02151 UvrB/uvrC motif ATY48_11015 PF08459 UvrC Helix-hairpin-helix N-terminal ATY48_11015 PF01541 GIY-YIG catalytic domain ATY48_11025 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATY48_11030 PF02348 Cytidylyltransferase ATY48_11035 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ATY48_11040 PF00664 ABC transporter transmembrane region ATY48_11040 PF00005 ABC transporter ATY48_11050 PF01618 MotA/TolQ/ExbB proton channel family ATY48_11055 PF03772 Competence protein ATY48_11055 PF00753 Metallo-beta-lactamase superfamily ATY48_11070 PF00005 ABC transporter ATY48_11075 PF02687 FtsX-like permease family ATY48_11075 PF12704 MacB-like periplasmic core domain ATY48_11085 PF03937 Flavinator of succinate dehydrogenase ATY48_11090 PF13085 2Fe-2S iron-sulfur cluster binding domain ATY48_11100 PF02910 Fumarate reductase flavoprotein C-term ATY48_11100 PF00890 FAD binding domain ATY48_11105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY48_11110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY48_11115 PF01571 Aminomethyltransferase folate-binding domain ATY48_11120 PF00005 ABC transporter ATY48_11120 PF17912 MalK OB fold domain ATY48_11125 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY48_11125 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY48_11130 PF02685 Glucokinase ATY48_11135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ATY48_11140 PF00920 Dehydratase family ATY48_11145 PF01081 KDPG and KHG aldolase ATY48_11150 PF05598 Transposase domain (DUF772) ATY48_11180 PF00672 HAMP domain ATY48_11180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY48_11180 PF00512 His Kinase A (phospho-acceptor) domain ATY48_11180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_11180 PF00072 Response regulator receiver domain ATY48_11180 PF01627 Hpt domain ATY48_11190 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_11210 PF00990 Diguanylate cyclase, GGDEF domain ATY48_11210 PF08448 PAS fold ATY48_11240 PF02253 Phospholipase A1 ATY48_11250 PF05681 Fumarate hydratase (Fumerase) ATY48_11250 PF05683 Fumarase C-terminus ATY48_11255 PF00005 ABC transporter ATY48_11260 PF00175 Oxidoreductase NAD-binding domain ATY48_11260 PF00970 Oxidoreductase FAD-binding domain ATY48_11265 PF00255 Glutathione peroxidase ATY48_11285 PF00082 Subtilase family ATY48_11290 PF04542 Sigma-70 region 2 ATY48_11290 PF08281 Sigma-70, region 4 ATY48_11300 PF12802 MarR family ATY48_11325 PF00854 POT family ATY48_11335 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY48_11335 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_11335 PF14310 Fibronectin type III-like domain ATY48_11350 PF00990 Diguanylate cyclase, GGDEF domain ATY48_11350 PF00360 Phytochrome region ATY48_11350 PF00563 EAL domain ATY48_11350 PF01590 GAF domain ATY48_11355 PF00474 Sodium:solute symporter family ATY48_11360 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY48_11360 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_11360 PF14310 Fibronectin type III-like domain ATY48_11380 PF00342 Phosphoglucose isomerase ATY48_11385 PF02261 Aspartate decarboxylase ATY48_11390 PF02569 Pantoate-beta-alanine ligase ATY48_11395 PF02548 Ketopantoate hydroxymethyltransferase ATY48_11400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY48_11405 PF01743 Poly A polymerase head domain ATY48_11405 PF12626 Polymerase A arginine-rich C-terminus ATY48_11405 PF12627 Probable RNA and SrmB- binding site of polymerase A ATY48_11415 PF02649 Type I GTP cyclohydrolase folE2 ATY48_11420 PF01520 N-acetylmuramoyl-L-alanine amidase ATY48_11440 PF05598 Transposase domain (DUF772) ATY48_11445 PF03797 Autotransporter beta-domain ATY48_11445 PF00082 Subtilase family ATY48_11450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_11455 PF00873 AcrB/AcrD/AcrF family ATY48_11460 PF02321 Outer membrane efflux protein ATY48_11465 PF08448 PAS fold ATY48_11465 PF00512 His Kinase A (phospho-acceptor) domain ATY48_11465 PF00072 Response regulator receiver domain ATY48_11465 PF13426 PAS domain ATY48_11465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_11470 PF00196 Bacterial regulatory proteins, luxR family ATY48_11470 PF00072 Response regulator receiver domain ATY48_11475 PF12951 Passenger-associated-transport-repeat ATY48_11480 PF01527 Transposase ATY48_11490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY48_11495 PF01817 Chorismate mutase type II ATY48_11495 PF01842 ACT domain ATY48_11495 PF00800 Prephenate dehydratase ATY48_11500 PF00266 Aminotransferase class-V ATY48_11505 PF00174 Oxidoreductase molybdopterin binding domain ATY48_11515 PF01794 Ferric reductase like transmembrane component ATY48_11540 PF00392 Bacterial regulatory proteins, gntR family ATY48_11540 PF07702 UTRA domain ATY48_11550 PF07969 Amidohydrolase family ATY48_11555 PF00221 Aromatic amino acid lyase ATY48_11565 PF01175 Urocanase Rossmann-like domain ATY48_11565 PF17392 Urocanase C-terminal domain ATY48_11565 PF17391 Urocanase N-terminal domain ATY48_11580 PF13276 HTH-like domain ATY48_11585 PF01527 Transposase ATY48_11590 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY48_11590 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY48_11595 PF01008 Initiation factor 2 subunit family ATY48_11605 PF00152 tRNA synthetases class II (D, K and N) ATY48_11610 PF03120 NAD-dependent DNA ligase OB-fold domain ATY48_11610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ATY48_11610 PF12826 Helix-hairpin-helix motif ATY48_11610 PF01653 NAD-dependent DNA ligase adenylation domain ATY48_11610 PF00533 BRCA1 C Terminus (BRCT) domain ATY48_11620 PF04354 ZipA, C-terminal FtsZ-binding domain ATY48_11625 PF02463 RecF/RecN/SMC N terminal domain ATY48_11630 PF03948 Ribosomal protein L9, C-terminal domain ATY48_11630 PF01281 Ribosomal protein L9, N-terminal domain ATY48_11635 PF01084 Ribosomal protein S18 ATY48_11640 PF01250 Ribosomal protein S6 ATY48_11645 PF01521 Iron-sulphur cluster biosynthesis ATY48_11650 PF00152 tRNA synthetases class II (D, K and N) ATY48_11650 PF01336 OB-fold nucleic acid binding domain ATY48_11680 PF00484 Carbonic anhydrase ATY48_11685 PF06052 3-hydroxyanthranilic acid dioxygenase ATY48_11695 PF00266 Aminotransferase class-V ATY48_11700 PF01494 FAD binding domain ATY48_11705 PF08411 Exonuclease C-terminal ATY48_11705 PF00929 Exonuclease ATY48_11715 PF00248 Aldo/keto reductase family ATY48_11730 PF01513 ATP-NAD kinase ATY48_11735 PF01170 Putative RNA methylase family UPF0020 ATY48_11735 PF02926 THUMP domain ATY48_11735 PF10672 S-adenosylmethionine-dependent methyltransferase ATY48_11745 PF00005 ABC transporter ATY48_11745 PF12848 ABC transporter ATY48_11750 PF00005 ABC transporter ATY48_11755 PF00005 ABC transporter ATY48_11785 PF00581 Rhodanese-like domain ATY48_11790 PF00293 NUDIX domain ATY48_11795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY48_11795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY48_11800 PF00378 Enoyl-CoA hydratase/isomerase ATY48_11810 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY48_11810 PF10576 Iron-sulfur binding domain of endonuclease III ATY48_11810 PF00633 Helix-hairpin-helix motif ATY48_11820 PF00484 Carbonic anhydrase ATY48_11825 PF01609 Transposase DDE domain ATY48_11825 PF05598 Transposase domain (DUF772) ATY48_11840 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_11855 PF12849 PBP superfamily domain ATY48_11860 PF12849 PBP superfamily domain ATY48_11865 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_11870 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_11875 PF00005 ABC transporter ATY48_11880 PF01895 PhoU domain ATY48_11890 PF00929 Exonuclease ATY48_11905 PF00872 Transposase, Mutator family ATY48_11930 PF13495 Phage integrase, N-terminal SAM-like domain ATY48_11930 PF00589 Phage integrase family ATY48_11935 PF02355 Protein export membrane protein ATY48_11935 PF07549 SecD/SecF GG Motif ATY48_11940 PF02355 Protein export membrane protein ATY48_11940 PF07549 SecD/SecF GG Motif ATY48_11940 PF13721 SecD export protein N-terminal TM region ATY48_11945 PF02699 Preprotein translocase subunit ATY48_11950 PF01702 Queuine tRNA-ribosyltransferase ATY48_11955 PF02547 Queuosine biosynthesis protein ATY48_11990 PF05598 Transposase domain (DUF772) ATY48_12025 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_12045 PF00037 4Fe-4S binding domain ATY48_12060 PF01467 Cytidylyltransferase-like ATY48_12070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_12070 PF00183 Hsp90 protein ATY48_12090 PF00899 ThiF family ATY48_12105 PF05598 Transposase domain (DUF772) ATY48_12125 PF00665 Integrase core domain ATY48_12125 PF13936 Helix-turn-helix domain ATY48_12130 PF05598 Transposase domain (DUF772) ATY48_12130 PF01609 Transposase DDE domain ATY48_12160 PF00994 Probable molybdopterin binding domain ATY48_12160 PF03453 MoeA N-terminal region (domain I and II) ATY48_12160 PF03454 MoeA C-terminal region (domain IV) ATY48_12165 PF01926 50S ribosome-binding GTPase ATY48_12165 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATY48_12170 PF01011 PQQ enzyme repeat ATY48_12170 PF13360 PQQ-like domain ATY48_12180 PF13464 Domain of unknown function (DUF4115) ATY48_12190 PF04055 Radical SAM superfamily ATY48_12195 PF00334 Nucleoside diphosphate kinase ATY48_12205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY48_12205 PF00378 Enoyl-CoA hydratase/isomerase ATY48_12205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY48_12210 PF00108 Thiolase, N-terminal domain ATY48_12210 PF02803 Thiolase, C-terminal domain ATY48_12215 PF00654 Voltage gated chloride channel ATY48_12225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATY48_12235 PF12002 MgsA AAA+ ATPase C terminal ATY48_12235 PF16193 AAA C-terminal domain ATY48_12235 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_12245 PF03548 Outer membrane lipoprotein carrier protein LolA ATY48_12255 PF01580 FtsK/SpoIIIE family ATY48_12255 PF17854 FtsK alpha domain ATY48_12255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ATY48_12255 PF09397 Ftsk gamma domain ATY48_12260 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_12280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ATY48_12285 PF01176 Translation initiation factor 1A / IF-1 ATY48_12290 PF17871 AAA lid domain ATY48_12290 PF07724 AAA domain (Cdc48 subfamily) ATY48_12290 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_12290 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_12290 PF02861 Clp amino terminal domain, pathogenicity island component ATY48_12295 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATY48_12300 PF00293 NUDIX domain ATY48_12310 PF04356 Protein of unknown function (DUF489) ATY48_12315 PF12729 Four helix bundle sensory module for signal transduction ATY48_12315 PF00672 HAMP domain ATY48_12315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_12330 PF08447 PAS fold ATY48_12330 PF00990 Diguanylate cyclase, GGDEF domain ATY48_12330 PF00563 EAL domain ATY48_12330 PF08448 PAS fold ATY48_12335 PF07730 Histidine kinase ATY48_12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_12340 PF03707 Bacterial signalling protein N terminal repeat ATY48_12340 PF00563 EAL domain ATY48_12340 PF00990 Diguanylate cyclase, GGDEF domain ATY48_12345 PF13188 PAS domain ATY48_12345 PF13426 PAS domain ATY48_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_12345 PF00989 PAS fold ATY48_12345 PF00512 His Kinase A (phospho-acceptor) domain ATY48_12365 PF00072 Response regulator receiver domain ATY48_12365 PF01584 CheW-like domain ATY48_12375 PF00460 Flagella basal body rod protein ATY48_12375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY48_12380 PF03963 Flagellar hook capping protein - N-terminal region ATY48_12385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY48_12385 PF00460 Flagella basal body rod protein ATY48_12385 PF07559 Flagellar basal body protein FlaE ATY48_12390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY48_12390 PF00460 Flagella basal body rod protein ATY48_12395 PF00460 Flagella basal body rod protein ATY48_12395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY48_12400 PF02107 Flagellar L-ring protein ATY48_12405 PF02119 Flagellar P-ring protein ATY48_12410 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ATY48_12410 PF10135 Rod binding protein ATY48_12415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY48_12415 PF07196 Flagellin hook IN motif ATY48_12425 PF00700 Bacterial flagellin C-terminal helical region ATY48_12425 PF00669 Bacterial flagellin N-terminal helical region ATY48_12430 PF07195 Flagellar hook-associated protein 2 C-terminus ATY48_12430 PF07196 Flagellin hook IN motif ATY48_12430 PF02465 Flagellar hook-associated protein 2 N-terminus ATY48_12435 PF02561 Flagellar protein FliS ATY48_12450 PF00196 Bacterial regulatory proteins, luxR family ATY48_12450 PF00072 Response regulator receiver domain ATY48_12455 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY48_12455 PF04552 Sigma-54, DNA binding domain ATY48_12455 PF04963 Sigma-54 factor, core binding domain ATY48_12460 PF00072 Response regulator receiver domain ATY48_12460 PF01339 CheB methylesterase ATY48_12465 PF02954 Bacterial regulatory protein, Fis family ATY48_12465 PF00158 Sigma-54 interaction domain ATY48_12465 PF00072 Response regulator receiver domain ATY48_12470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY48_12480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY48_12480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY48_12515 PF00534 Glycosyl transferases group 1 ATY48_12515 PF00535 Glycosyl transferase family 2 ATY48_12520 PF02049 Flagellar hook-basal body complex protein FliE ATY48_12525 PF08345 Flagellar M-ring protein C-terminal ATY48_12525 PF01514 Secretory protein of YscJ/FliF family ATY48_12530 PF14841 FliG middle domain ATY48_12530 PF01706 FliG C-terminal domain ATY48_12530 PF14842 FliG N-terminal domain ATY48_12540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY48_12540 PF18269 T3SS EscN ATPase C-terminal domain ATY48_12560 PF02154 Flagellar motor switch protein FliM ATY48_12560 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY48_12565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY48_12570 PF04347 Flagellar biosynthesis protein, FliO ATY48_12575 PF00813 FliP family ATY48_12580 PF01313 Bacterial export proteins, family 3 ATY48_12585 PF01311 Bacterial export proteins, family 1 ATY48_12590 PF13188 PAS domain ATY48_12590 PF03707 Bacterial signalling protein N terminal repeat ATY48_12590 PF00563 EAL domain ATY48_12590 PF00990 Diguanylate cyclase, GGDEF domain ATY48_12595 PF00563 EAL domain ATY48_12595 PF13188 PAS domain ATY48_12595 PF00990 Diguanylate cyclase, GGDEF domain ATY48_12595 PF03707 Bacterial signalling protein N terminal repeat ATY48_12600 PF00563 EAL domain ATY48_12600 PF00990 Diguanylate cyclase, GGDEF domain ATY48_12600 PF03707 Bacterial signalling protein N terminal repeat ATY48_12605 PF01312 FlhB HrpN YscU SpaS Family ATY48_12610 PF00771 FHIPEP family ATY48_12615 PF00448 SRP54-type protein, GTPase domain ATY48_12620 PF10609 NUBPL iron-transfer P-loop NTPase ATY48_12625 PF04539 Sigma-70 region 3 ATY48_12625 PF04545 Sigma-70, region 4 ATY48_12625 PF04542 Sigma-70 region 2 ATY48_12630 PF00072 Response regulator receiver domain ATY48_12635 PF04344 Chemotaxis phosphatase, CheZ ATY48_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_12640 PF07194 P2 response regulator binding domain ATY48_12640 PF02895 Signal transducing histidine kinase, homodimeric domain ATY48_12640 PF01627 Hpt domain ATY48_12640 PF01584 CheW-like domain ATY48_12655 PF13936 Helix-turn-helix domain ATY48_12655 PF00665 Integrase core domain ATY48_12675 PF05598 Transposase domain (DUF772) ATY48_12675 PF01609 Transposase DDE domain ATY48_12680 PF05593 RHS Repeat ATY48_12680 PF03527 RHS protein ATY48_12685 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_12705 PF05598 Transposase domain (DUF772) ATY48_12705 PF01609 Transposase DDE domain ATY48_12715 PF05598 Transposase domain (DUF772) ATY48_12715 PF01609 Transposase DDE domain ATY48_12745 PF00873 AcrB/AcrD/AcrF family ATY48_12765 PF00034 Cytochrome c ATY48_12815 PF00005 ABC transporter ATY48_12815 PF00664 ABC transporter transmembrane region ATY48_12820 PF00005 ABC transporter ATY48_12820 PF00664 ABC transporter transmembrane region ATY48_12825 PF01654 Cytochrome bd terminal oxidase subunit I ATY48_12835 PF01609 Transposase DDE domain ATY48_12835 PF05598 Transposase domain (DUF772) ATY48_12840 PF01654 Cytochrome bd terminal oxidase subunit I ATY48_12845 PF02322 Cytochrome bd terminal oxidase subunit II ATY48_12865 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ATY48_12865 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ATY48_12870 PF00171 Aldehyde dehydrogenase family ATY48_12875 PF01472 PUA domain ATY48_12875 PF00696 Amino acid kinase family ATY48_12890 PF00206 Lyase ATY48_12895 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY48_12905 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase ATY48_12905 PF00696 Amino acid kinase family ATY48_12910 PF07687 Peptidase dimerisation domain ATY48_12910 PF01546 Peptidase family M20/M25/M40 ATY48_12920 PF00764 Arginosuccinate synthase ATY48_12925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY48_12925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY48_12935 PF09190 DALR domain ATY48_12935 PF01406 tRNA synthetases class I (C) catalytic domain ATY48_12940 PF02657 Fe-S metabolism associated domain ATY48_12955 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY48_12965 PF01809 Putative membrane protein insertion efficiency factor ATY48_12970 PF01979 Amidohydrolase family ATY48_12975 PF01551 Peptidase family M23 ATY48_12975 PF08460 Bacterial SH3 domain ATY48_12980 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ATY48_12985 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_13010 PF01609 Transposase DDE domain ATY48_13010 PF05598 Transposase domain (DUF772) ATY48_13020 PF01095 Pectinesterase ATY48_13040 PF00295 Glycosyl hydrolases family 28 ATY48_13050 PF13419 Haloacid dehalogenase-like hydrolase ATY48_13060 PF01979 Amidohydrolase family ATY48_13070 PF08207 Elongation factor P (EF-P) KOW-like domain ATY48_13070 PF01132 Elongation factor P (EF-P) OB domain ATY48_13070 PF09285 Elongation factor P, C-terminal ATY48_13075 PF04055 Radical SAM superfamily ATY48_13080 PF00990 Diguanylate cyclase, GGDEF domain ATY48_13080 PF00563 EAL domain ATY48_13080 PF13188 PAS domain ATY48_13080 PF03707 Bacterial signalling protein N terminal repeat ATY48_13090 PF00588 SpoU rRNA Methylase family ATY48_13095 PF00459 Inositol monophosphatase family ATY48_13100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY48_13100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY48_13105 PF00545 ribonuclease ATY48_13125 PF03880 DbpA RNA binding domain ATY48_13125 PF00270 DEAD/DEAH box helicase ATY48_13125 PF00271 Helicase conserved C-terminal domain ATY48_13130 PF00156 Phosphoribosyl transferase domain ATY48_13135 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ATY48_13145 PF14497 Glutathione S-transferase, C-terminal domain ATY48_13145 PF02798 Glutathione S-transferase, N-terminal domain ATY48_13150 PF00313 'Cold-shock' DNA-binding domain ATY48_13155 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ATY48_13160 PF07152 YaeQ protein ATY48_13170 PF00990 Diguanylate cyclase, GGDEF domain ATY48_13170 PF00563 EAL domain ATY48_13170 PF00072 Response regulator receiver domain ATY48_13175 PF01435 Peptidase family M48 ATY48_13180 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY48_13185 PF00106 short chain dehydrogenase ATY48_13190 PF05233 PHB accumulation regulatory domain ATY48_13190 PF07879 PHB/PHA accumulation regulator DNA-binding domain ATY48_13205 PF08676 MutL C terminal dimerisation domain ATY48_13205 PF01119 DNA mismatch repair protein, C-terminal domain ATY48_13210 PF11741 AMIN domain ATY48_13210 PF01520 N-acetylmuramoyl-L-alanine amidase ATY48_13215 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATY48_13220 PF03853 YjeF-related protein N-terminus ATY48_13220 PF01256 Carbohydrate kinase ATY48_13225 PF08331 Domain of unknown function (DUF1730) ATY48_13235 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_13240 PF02601 Exonuclease VII, large subunit ATY48_13240 PF13742 OB-fold nucleic acid binding domain ATY48_13255 PF03781 Sulfatase-modifying factor enzyme 1 ATY48_13260 PF00570 HRDC domain ATY48_13260 PF01612 3'-5' exonuclease ATY48_13300 PF00171 Aldehyde dehydrogenase family ATY48_13300 PF01619 Proline dehydrogenase ATY48_13300 PF14850 DNA-binding domain of Proline dehydrogenase ATY48_13300 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY48_13305 PF00872 Transposase, Mutator family ATY48_13335 PF04386 Stringent starvation protein B ATY48_13340 PF02798 Glutathione S-transferase, N-terminal domain ATY48_13340 PF00043 Glutathione S-transferase, C-terminal domain ATY48_13345 PF02167 Cytochrome C1 family ATY48_13350 PF00032 Cytochrome b(C-terminal)/b6/petD ATY48_13350 PF00033 Cytochrome b/b6/petB ATY48_13355 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ATY48_13355 PF00355 Rieske [2Fe-2S] domain ATY48_13360 PF01464 Transglycosylase SLT domain ATY48_13380 PF01938 TRAM domain ATY48_13380 PF04055 Radical SAM superfamily ATY48_13380 PF00919 Uncharacterized protein family UPF0004 ATY48_13385 PF02562 PhoH-like protein ATY48_13395 PF02130 Uncharacterized protein family UPF0054 ATY48_13405 PF00571 CBS domain ATY48_13405 PF03471 Transporter associated domain ATY48_13420 PF00171 Aldehyde dehydrogenase family ATY48_13430 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_13445 PF02321 Outer membrane efflux protein ATY48_13450 PF07690 Major Facilitator Superfamily ATY48_13455 PF13533 Biotin-lipoyl like ATY48_13465 PF00120 Glutamine synthetase, catalytic domain ATY48_13475 PF00120 Glutamine synthetase, catalytic domain ATY48_13480 PF01266 FAD dependent oxidoreductase ATY48_13485 PF00990 Diguanylate cyclase, GGDEF domain ATY48_13485 PF00072 Response regulator receiver domain ATY48_13490 PF07690 Major Facilitator Superfamily ATY48_13490 PF00083 Sugar (and other) transporter ATY48_13500 PF00384 Molybdopterin oxidoreductase ATY48_13505 PF02634 FdhD/NarQ family ATY48_13510 PF07690 Major Facilitator Superfamily ATY48_13520 PF00202 Aminotransferase class-III ATY48_13525 PF00005 ABC transporter ATY48_13535 PF04286 Protein of unknown function (DUF445) ATY48_13540 PF00072 Response regulator receiver domain ATY48_13540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_13540 PF00512 His Kinase A (phospho-acceptor) domain ATY48_13540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY48_13540 PF01627 Hpt domain ATY48_13540 PF00672 HAMP domain ATY48_13545 PF00072 Response regulator receiver domain ATY48_13550 PF01609 Transposase DDE domain ATY48_13550 PF05598 Transposase domain (DUF772) ATY48_13555 PF05088 Bacterial NAD-glutamate dehydrogenase ATY48_13565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_13565 PF00529 HlyD membrane-fusion protein of T1SS ATY48_13570 PF00873 AcrB/AcrD/AcrF family ATY48_13585 PF01609 Transposase DDE domain ATY48_13585 PF13006 Insertion element 4 transposase N-terminal ATY48_13590 PF00356 Bacterial regulatory proteins, lacI family ATY48_13595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY48_13595 PF00381 PTS HPr component phosphorylation site ATY48_13595 PF02896 PEP-utilising enzyme, TIM barrel domain ATY48_13595 PF05524 PEP-utilising enzyme, N-terminal ATY48_13595 PF00391 PEP-utilising enzyme, mobile domain ATY48_13600 PF00294 pfkB family carbohydrate kinase ATY48_13605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ATY48_13620 PF05598 Transposase domain (DUF772) ATY48_13620 PF01609 Transposase DDE domain ATY48_13655 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_13685 PF16671 Actin cross-linking domain ATY48_13685 PF04717 Type VI secretion system, phage-baseplate injector ATY48_13695 PF00665 Integrase core domain ATY48_13695 PF13333 Integrase core domain ATY48_13695 PF13276 HTH-like domain ATY48_13705 PF04717 Type VI secretion system, phage-baseplate injector ATY48_13705 PF16671 Actin cross-linking domain ATY48_13715 PF00665 Integrase core domain ATY48_13715 PF13333 Integrase core domain ATY48_13715 PF13276 HTH-like domain ATY48_13720 PF03377 TAL effector repeat ATY48_13725 PF04717 Type VI secretion system, phage-baseplate injector ATY48_13725 PF16671 Actin cross-linking domain ATY48_13770 PF01609 Transposase DDE domain ATY48_13770 PF05598 Transposase domain (DUF772) ATY48_13800 PF00593 TonB dependent receptor ATY48_13800 PF07715 TonB-dependent Receptor Plug Domain ATY48_13810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY48_13810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY48_13830 PF01618 MotA/TolQ/ExbB proton channel family ATY48_13835 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY48_13835 PF00691 OmpA family ATY48_13840 PF13614 AAA domain ATY48_13845 PF01584 CheW-like domain ATY48_13855 PF00072 Response regulator receiver domain ATY48_13860 PF09078 CheY binding ATY48_13860 PF01584 CheW-like domain ATY48_13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_13860 PF02895 Signal transducing histidine kinase, homodimeric domain ATY48_13860 PF01627 Hpt domain ATY48_13885 PF00672 HAMP domain ATY48_13885 PF02203 Tar ligand binding domain homologue ATY48_13885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13895 PF02203 Tar ligand binding domain homologue ATY48_13895 PF00672 HAMP domain ATY48_13895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13900 PF02203 Tar ligand binding domain homologue ATY48_13900 PF00672 HAMP domain ATY48_13905 PF00672 HAMP domain ATY48_13905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13905 PF02203 Tar ligand binding domain homologue ATY48_13910 PF02203 Tar ligand binding domain homologue ATY48_13910 PF00672 HAMP domain ATY48_13910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13915 PF02203 Tar ligand binding domain homologue ATY48_13915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13915 PF00672 HAMP domain ATY48_13920 PF07317 Flagellar regulator YcgR ATY48_13920 PF07238 PilZ domain ATY48_13925 PF01584 CheW-like domain ATY48_13945 PF02203 Tar ligand binding domain homologue ATY48_13945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_13945 PF00672 HAMP domain ATY48_13950 PF01739 CheR methyltransferase, SAM binding domain ATY48_13950 PF03705 CheR methyltransferase, all-alpha domain ATY48_13955 PF03975 CheD chemotactic sensory transduction ATY48_13960 PF01339 CheB methylesterase ATY48_13960 PF00072 Response regulator receiver domain ATY48_13965 PF03707 Bacterial signalling protein N terminal repeat ATY48_13965 PF00563 EAL domain ATY48_13965 PF00990 Diguanylate cyclase, GGDEF domain ATY48_13970 PF00561 alpha/beta hydrolase fold ATY48_13975 PF06434 Aconitate hydratase 2 N-terminus ATY48_13975 PF00330 Aconitase family (aconitate hydratase) ATY48_13975 PF11791 Aconitate B N-terminal domain ATY48_13990 PF00330 Aconitase family (aconitate hydratase) ATY48_13990 PF00694 Aconitase C-terminal domain ATY48_14000 PF13193 AMP-binding enzyme C-terminal domain ATY48_14000 PF00501 AMP-binding enzyme ATY48_14005 PF00378 Enoyl-CoA hydratase/isomerase ATY48_14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_14010 PF00072 Response regulator receiver domain ATY48_14010 PF01627 Hpt domain ATY48_14010 PF00512 His Kinase A (phospho-acceptor) domain ATY48_14020 PF00072 Response regulator receiver domain ATY48_14025 PF00152 tRNA synthetases class II (D, K and N) ATY48_14025 PF01336 OB-fold nucleic acid binding domain ATY48_14030 PF03462 PCRF domain ATY48_14030 PF00472 RF-1 domain ATY48_14045 PF13542 Helix-turn-helix domain of transposase family ISL3 ATY48_14045 PF01610 Transposase ATY48_14045 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ATY48_14060 PF17768 RecJ OB domain ATY48_14060 PF02272 DHHA1 domain ATY48_14060 PF01368 DHH family ATY48_14070 PF03449 Transcription elongation factor, N-terminal ATY48_14070 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY48_14075 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATY48_14075 PF02142 MGS-like domain ATY48_14075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY48_14085 PF00117 Glutamine amidotransferase class-I ATY48_14085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATY48_14090 PF05173 Dihydrodipicolinate reductase, C-terminus ATY48_14090 PF01113 Dihydrodipicolinate reductase, N-terminus ATY48_14100 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_14110 PF03473 MOSC domain ATY48_14110 PF03475 3-alpha domain ATY48_14115 PF00155 Aminotransferase class I and II ATY48_14135 PF07664 Ferrous iron transport protein B C terminus ATY48_14135 PF07670 Nucleoside recognition ATY48_14135 PF02421 Ferrous iron transport protein B ATY48_14145 PF00378 Enoyl-CoA hydratase/isomerase ATY48_14155 PF00682 HMGL-like ATY48_14160 PF00106 short chain dehydrogenase ATY48_14165 PF01132 Elongation factor P (EF-P) OB domain ATY48_14165 PF08207 Elongation factor P (EF-P) KOW-like domain ATY48_14165 PF09285 Elongation factor P, C-terminal ATY48_14180 PF13936 Helix-turn-helix domain ATY48_14180 PF00665 Integrase core domain ATY48_14190 PF00083 Sugar (and other) transporter ATY48_14200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ATY48_14200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ATY48_14215 PF01055 Glycosyl hydrolases family 31 ATY48_14215 PF16338 Domain of unknown function (DUF4968) ATY48_14215 PF17137 Domain of unknown function (DUF5110) ATY48_14225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_14225 PF03466 LysR substrate binding domain ATY48_14230 PF01081 KDPG and KHG aldolase ATY48_14235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY48_14235 PF13378 Enolase C-terminal domain-like ATY48_14240 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY48_14245 PF05035 2-keto-3-deoxy-galactonokinase ATY48_14250 PF11953 Domain of unknown function (DUF3470) ATY48_14250 PF00037 4Fe-4S binding domain ATY48_14260 PF00701 Dihydrodipicolinate synthetase family ATY48_14275 PF00578 AhpC/TSA family ATY48_14280 PF13638 PIN domain ATY48_14280 PF02562 PhoH-like protein ATY48_14290 PF08543 Phosphomethylpyrimidine kinase ATY48_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_14320 PF03466 LysR substrate binding domain ATY48_14325 PF17954 Quercetinase C-terminal cupin domain ATY48_14325 PF02678 Pirin ATY48_14350 PF03796 DnaB-like helicase C terminal domain ATY48_14350 PF00772 DnaB-like helicase N terminal domain ATY48_14370 PF02599 Global regulator protein family ATY48_14375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY48_14375 PF01411 tRNA synthetases class II (A) ATY48_14375 PF02272 DHHA1 domain ATY48_14380 PF02631 RecX family ATY48_14385 PF00154 recA bacterial DNA recombination protein ATY48_14390 PF01726 LexA DNA binding domain ATY48_14390 PF00717 Peptidase S24-like ATY48_14395 PF03109 ABC1 family ATY48_14400 PF02464 Competence-damaged protein ATY48_14405 PF13167 GTP-binding GTPase N-terminal ATY48_14405 PF01926 50S ribosome-binding GTPase ATY48_14405 PF16360 GTP-binding GTPase Middle Region ATY48_14410 PF17209 Hfq protein ATY48_14420 PF00809 Pterin binding enzyme ATY48_14425 PF01434 Peptidase family M41 ATY48_14425 PF17862 AAA+ lid domain ATY48_14425 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_14425 PF06480 FtsH Extracellular ATY48_14430 PF01728 FtsJ-like methyltransferase ATY48_14435 PF01985 CRS1 / YhbY (CRM) domain ATY48_14445 PF01551 Peptidase family M23 ATY48_14445 PF01476 LysM domain ATY48_14450 PF09335 SNARE associated Golgi protein ATY48_14460 PF01975 Survival protein SurE ATY48_14465 PF01713 Smr domain ATY48_14470 PF01142 tRNA pseudouridine synthase D (TruD) ATY48_14475 PF02542 YgbB family ATY48_14480 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATY48_14485 PF04977 Septum formation initiator ATY48_14490 PF00113 Enolase, C-terminal TIM barrel domain ATY48_14490 PF03952 Enolase, N-terminal domain ATY48_14500 PF00793 DAHP synthetase I family ATY48_14505 PF00117 Glutamine amidotransferase class-I ATY48_14505 PF06418 CTP synthase N-terminus ATY48_14515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_14515 PF01751 Toprim domain ATY48_14515 PF00986 DNA gyrase B subunit, carboxyl terminus ATY48_14515 PF00204 DNA gyrase B ATY48_14540 PF01384 Phosphate transporter family ATY48_14550 PF00571 CBS domain ATY48_14550 PF03471 Transporter associated domain ATY48_14550 PF01595 Cyclin M transmembrane N-terminal domain ATY48_14565 PF00296 Luciferase-like monooxygenase ATY48_14570 PF07690 Major Facilitator Superfamily ATY48_14575 PF00005 ABC transporter ATY48_14575 PF00664 ABC transporter transmembrane region ATY48_14580 PF00005 ABC transporter ATY48_14600 PF13579 Glycosyl transferase 4-like domain ATY48_14600 PF00534 Glycosyl transferases group 1 ATY48_14620 PF08241 Methyltransferase domain ATY48_14635 PF00535 Glycosyl transferase family 2 ATY48_14640 PF01943 Polysaccharide biosynthesis protein ATY48_14645 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY48_14665 PF05523 WxcM-like, C-terminal ATY48_14680 PF00034 Cytochrome c ATY48_14690 PF08281 Sigma-70, region 4 ATY48_14690 PF04542 Sigma-70 region 2 ATY48_14700 PF00082 Subtilase family ATY48_14705 PF01578 Cytochrome C assembly protein ATY48_14710 PF04995 Heme exporter protein D (CcmD) ATY48_14715 PF03100 CcmE ATY48_14720 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY48_14720 PF01578 Cytochrome C assembly protein ATY48_14725 PF08534 Redoxin ATY48_14730 PF03918 Cytochrome C biogenesis protein ATY48_14740 PF03377 TAL effector repeat ATY48_14770 PF03377 TAL effector repeat ATY48_14775 PF00873 AcrB/AcrD/AcrF family ATY48_14785 PF00873 AcrB/AcrD/AcrF family ATY48_14790 PF00529 HlyD membrane-fusion protein of T1SS ATY48_14790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_14820 PF01527 Transposase ATY48_14825 PF13276 HTH-like domain ATY48_14835 PF01526 Tn3 transposase DDE domain ATY48_14835 PF13700 Domain of unknown function (DUF4158) ATY48_14840 PF00486 Transcriptional regulatory protein, C terminal ATY48_14840 PF00072 Response regulator receiver domain ATY48_14845 PF00034 Cytochrome c ATY48_14845 PF03150 Di-haem cytochrome c peroxidase ATY48_14850 PF00512 His Kinase A (phospho-acceptor) domain ATY48_14850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_14855 PF03466 LysR substrate binding domain ATY48_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_14885 PF00069 Protein kinase domain ATY48_14925 PF16671 Actin cross-linking domain ATY48_14925 PF04717 Type VI secretion system, phage-baseplate injector ATY48_14935 PF05598 Transposase domain (DUF772) ATY48_14935 PF01609 Transposase DDE domain ATY48_14945 PF07724 AAA domain (Cdc48 subfamily) ATY48_14945 PF17871 AAA lid domain ATY48_14945 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_14945 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_14970 PF05638 Type VI secretion system effector, Hcp ATY48_14990 PF01609 Transposase DDE domain ATY48_14990 PF05598 Transposase domain (DUF772) ATY48_15010 PF01609 Transposase DDE domain ATY48_15010 PF05598 Transposase domain (DUF772) ATY48_15030 PF13276 HTH-like domain ATY48_15030 PF13683 Integrase core domain ATY48_15040 PF01106 NifU-like domain ATY48_15045 PF01329 Pterin 4 alpha carbinolamine dehydratase ATY48_15055 PF02535 ZIP Zinc transporter ATY48_15060 PF02535 ZIP Zinc transporter ATY48_15065 PF11737 Protein of unknown function (DUF3300) ATY48_15070 PF01479 S4 domain ATY48_15070 PF00849 RNA pseudouridylate synthase ATY48_15075 PF00575 S1 RNA binding domain ATY48_15075 PF10150 Ribonuclease E/G family ATY48_15075 PF12111 Polyribonucleotide phosphorylase C terminal ATY48_15085 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_15090 PF00196 Bacterial regulatory proteins, luxR family ATY48_15090 PF00072 Response regulator receiver domain ATY48_15100 PF05598 Transposase domain (DUF772) ATY48_15100 PF01609 Transposase DDE domain ATY48_15110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY48_15120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY48_15120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY48_15120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY48_15130 PF01648 4'-phosphopantetheinyl transferase superfamily ATY48_15130 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ATY48_15160 PF01609 Transposase DDE domain ATY48_15160 PF05598 Transposase domain (DUF772) ATY48_15190 PF00072 Response regulator receiver domain ATY48_15190 PF03861 ANTAR domain ATY48_15200 PF10414 Sirohaem synthase dimerisation region ATY48_15200 PF14824 Sirohaem biosynthesis protein central ATY48_15200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY48_15230 PF05598 Transposase domain (DUF772) ATY48_15230 PF01609 Transposase DDE domain ATY48_15260 PF03861 ANTAR domain ATY48_15260 PF00072 Response regulator receiver domain ATY48_15270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY48_15270 PF14824 Sirohaem biosynthesis protein central ATY48_15270 PF10414 Sirohaem synthase dimerisation region ATY48_15295 PF12804 MobA-like NTP transferase domain ATY48_15300 PF00994 Probable molybdopterin binding domain ATY48_15300 PF03454 MoeA C-terminal region (domain IV) ATY48_15300 PF03453 MoeA N-terminal region (domain I and II) ATY48_15360 PF07715 TonB-dependent Receptor Plug Domain ATY48_15360 PF00593 TonB dependent receptor ATY48_15380 PF04616 Glycosyl hydrolases family 43 ATY48_15385 PF07532 Bacterial Ig-like domain (group 4) ATY48_15390 PF00593 TonB dependent receptor ATY48_15390 PF07715 TonB-dependent Receptor Plug Domain ATY48_15400 PF00082 Subtilase family ATY48_15400 PF09286 Pro-kumamolisin, activation domain ATY48_15435 PF13520 Amino acid permease ATY48_15450 PF00557 Metallopeptidase family M24 ATY48_15450 PF01321 Creatinase/Prolidase N-terminal domain ATY48_15455 PF00171 Aldehyde dehydrogenase family ATY48_15460 PF00701 Dihydrodipicolinate synthetase family ATY48_15465 PF04324 BFD-like [2Fe-2S] binding domain ATY48_15465 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_15475 PF01266 FAD dependent oxidoreductase ATY48_15480 PF05544 Proline racemase ATY48_15490 PF00448 SRP54-type protein, GTPase domain ATY48_15490 PF02881 SRP54-type protein, helical bundle domain ATY48_15500 PF00633 Helix-hairpin-helix motif ATY48_15500 PF14815 NUDIX domain ATY48_15500 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY48_15505 PF04362 Bacterial Fe(2+) trafficking ATY48_15510 PF00072 Response regulator receiver domain ATY48_15510 PF13426 PAS domain ATY48_15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_15520 PF05598 Transposase domain (DUF772) ATY48_15620 PF03808 Glycosyl transferase WecB/TagA/CpsF family ATY48_15635 PF14667 Polysaccharide biosynthesis C-terminal domain ATY48_15645 PF00534 Glycosyl transferases group 1 ATY48_15645 PF13439 Glycosyltransferase Family 4 ATY48_15665 PF02397 Bacterial sugar transferase ATY48_15685 PF13411 MerR HTH family regulatory protein ATY48_15690 PF00216 Bacterial DNA-binding protein ATY48_15695 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATY48_15695 PF03147 Ferredoxin-fold anticodon binding domain ATY48_15695 PF03483 B3/4 domain ATY48_15695 PF01588 Putative tRNA binding domain ATY48_15695 PF03484 tRNA synthetase B5 domain ATY48_15700 PF01409 tRNA synthetases class II core domain (F) ATY48_15700 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATY48_15705 PF00453 Ribosomal protein L20 ATY48_15710 PF01632 Ribosomal protein L35 ATY48_15715 PF05198 Translation initiation factor IF-3, N-terminal domain ATY48_15715 PF00707 Translation initiation factor IF-3, C-terminal domain ATY48_15720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY48_15720 PF02824 TGS domain ATY48_15720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY48_15720 PF03129 Anticodon binding domain ATY48_15730 PF01527 Transposase ATY48_15750 PF12344 Ultra-violet resistance protein B ATY48_15750 PF04851 Type III restriction enzyme, res subunit ATY48_15750 PF17757 UvrB interaction domain ATY48_15750 PF02151 UvrB/uvrC motif ATY48_15750 PF00271 Helicase conserved C-terminal domain ATY48_15755 PF07963 Prokaryotic N-terminal methylation motif ATY48_15755 PF00114 Pilin (bacterial filament) ATY48_15765 PF07963 Prokaryotic N-terminal methylation motif ATY48_15765 PF00114 Pilin (bacterial filament) ATY48_15770 PF05567 Neisseria PilC beta-propeller domain ATY48_15790 PF12019 Type II transport protein GspH ATY48_15790 PF07963 Prokaryotic N-terminal methylation motif ATY48_15795 PF03641 Possible lysine decarboxylase ATY48_15795 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ATY48_15795 PF11892 Domain of unknown function (DUF3412) ATY48_15800 PF00593 TonB dependent receptor ATY48_15805 PF01914 MarC family integral membrane protein ATY48_15815 PF00462 Glutaredoxin ATY48_15820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY48_15820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY48_15825 PF02222 ATP-grasp domain ATY48_15825 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATY48_15830 PF00731 AIR carboxylase ATY48_15840 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATY48_15840 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATY48_15850 PF00013 KH domain ATY48_15850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATY48_15850 PF01138 3' exoribonuclease family, domain 1 ATY48_15850 PF03725 3' exoribonuclease family, domain 2 ATY48_15850 PF00575 S1 RNA binding domain ATY48_15855 PF00312 Ribosomal protein S15 ATY48_15860 PF09157 Pseudouridine synthase II TruB, C-terminal ATY48_15860 PF16198 tRNA pseudouridylate synthase B C-terminal domain ATY48_15860 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATY48_15865 PF02033 Ribosome-binding factor A ATY48_15870 PF08364 Bacterial translation initiation factor IF-2 associated region ATY48_15870 PF11987 Translation-initiation factor 2 ATY48_15870 PF04760 Translation initiation factor IF-2, N-terminal region ATY48_15870 PF00009 Elongation factor Tu GTP binding domain ATY48_15875 PF08529 NusA N-terminal domain ATY48_15875 PF00575 S1 RNA binding domain ATY48_15875 PF13184 NusA-like KH domain ATY48_15880 PF02576 RimP N-terminal domain ATY48_15880 PF17384 RimP C-terminal SH3 domain ATY48_15890 PF00361 Proton-conducting membrane transporter ATY48_15895 PF00361 Proton-conducting membrane transporter ATY48_15895 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ATY48_15900 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY48_15900 PF00361 Proton-conducting membrane transporter ATY48_15905 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY48_15910 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATY48_15915 PF12838 4Fe-4S dicluster domain ATY48_15920 PF00146 NADH dehydrogenase ATY48_15925 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ATY48_15925 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ATY48_15925 PF00384 Molybdopterin oxidoreductase ATY48_15930 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ATY48_15930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ATY48_15930 PF10531 SLBB domain ATY48_15940 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ATY48_15945 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ATY48_15950 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATY48_15955 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATY48_15970 PF00121 Triosephosphate isomerase ATY48_15990 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_16005 PF00563 EAL domain ATY48_16005 PF03707 Bacterial signalling protein N terminal repeat ATY48_16005 PF00990 Diguanylate cyclase, GGDEF domain ATY48_16020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY48_16020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY48_16020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY48_16020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY48_16025 PF01039 Carboxyl transferase domain ATY48_16025 PF17848 Acetyl-coA carboxylase zinc finger domain ATY48_16030 PF00290 Tryptophan synthase alpha chain ATY48_16040 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_16045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_16045 PF03466 LysR substrate binding domain ATY48_16050 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATY48_16055 PF01416 tRNA pseudouridine synthase ATY48_16070 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY48_16070 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATY48_16075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY48_16075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY48_16080 PF01264 Chorismate synthase ATY48_16085 PF05175 Methyltransferase small domain ATY48_16090 PF02630 SCO1/SenC ATY48_16095 PF02666 Phosphatidylserine decarboxylase ATY48_16105 PF05872 Bacterial protein of unknown function (DUF853) ATY48_16110 PF13936 Helix-turn-helix domain ATY48_16110 PF00665 Integrase core domain ATY48_16125 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY48_16125 PF03449 Transcription elongation factor, N-terminal ATY48_16130 PF00919 Uncharacterized protein family UPF0004 ATY48_16130 PF18693 TRAM domain ATY48_16130 PF04055 Radical SAM superfamily ATY48_16135 PF01738 Dienelactone hydrolase family ATY48_16150 PF00692 dUTPase ATY48_16155 PF10609 NUBPL iron-transfer P-loop NTPase ATY48_16190 PF01266 FAD dependent oxidoreductase ATY48_16195 PF04235 Protein of unknown function (DUF418) ATY48_16200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY48_16205 PF00877 NlpC/P60 family ATY48_16210 PF00877 NlpC/P60 family ATY48_16225 PF00375 Sodium:dicarboxylate symporter family ATY48_16230 PF00245 Alkaline phosphatase ATY48_16235 PF11734 TilS substrate C-terminal domain ATY48_16235 PF01171 PP-loop family ATY48_16235 PF09179 TilS substrate binding domain ATY48_16240 PF02609 Exonuclease VII small subunit ATY48_16245 PF00348 Polyprenyl synthetase ATY48_16265 PF01523 Putative modulator of DNA gyrase ATY48_16270 PF04751 Protein of unknown function (DUF615) ATY48_16275 PF01523 Putative modulator of DNA gyrase ATY48_16285 PF13116 Protein of unknown function ATY48_16285 PF13502 AsmA-like C-terminal region ATY48_16290 PF00575 S1 RNA binding domain ATY48_16290 PF10150 Ribonuclease E/G family ATY48_16295 PF02545 Maf-like protein ATY48_16300 PF04402 Protein of unknown function (DUF541) ATY48_16315 PF02590 Predicted SPOUT methyltransferase ATY48_16340 PF01467 Cytidylyltransferase-like ATY48_16355 PF08264 Anticodon-binding domain of tRNA ATY48_16355 PF00133 tRNA synthetases class I (I, L, M and V) ATY48_16355 PF13603 Leucyl-tRNA synthetase, Domain 2 ATY48_16365 PF00085 Thioredoxin ATY48_16375 PF05598 Transposase domain (DUF772) ATY48_16375 PF01609 Transposase DDE domain ATY48_16385 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_16435 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_16445 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY48_16445 PF00128 Alpha amylase, catalytic domain ATY48_16455 PF05598 Transposase domain (DUF772) ATY48_16455 PF01609 Transposase DDE domain ATY48_16480 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_16485 PF00665 Integrase core domain ATY48_16485 PF13936 Helix-turn-helix domain ATY48_16510 PF13683 Integrase core domain ATY48_16510 PF13276 HTH-like domain ATY48_16535 PF03797 Autotransporter beta-domain ATY48_16535 PF00657 GDSL-like Lipase/Acylhydrolase ATY48_16545 PF05690 Thiazole biosynthesis protein ThiG ATY48_16550 PF02390 Putative methyltransferase ATY48_16555 PF02080 TrkA-C domain ATY48_16555 PF03600 Citrate transporter ATY48_16585 PF13936 Helix-turn-helix domain ATY48_16585 PF00665 Integrase core domain ATY48_16590 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY48_16595 PF01741 Large-conductance mechanosensitive channel, MscL ATY48_16605 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_16615 PF00135 Carboxylesterase family ATY48_16620 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY48_16620 PF00588 SpoU rRNA Methylase family ATY48_16650 PF11838 ERAP1-like C-terminal domain ATY48_16650 PF01433 Peptidase family M1 domain ATY48_16655 PF00873 AcrB/AcrD/AcrF family ATY48_16660 PF00529 HlyD membrane-fusion protein of T1SS ATY48_16660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_16665 PF00009 Elongation factor Tu GTP binding domain ATY48_16670 PF01507 Phosphoadenosine phosphosulfate reductase family ATY48_16675 PF00258 Flavodoxin ATY48_16675 PF00667 FAD binding domain ATY48_16675 PF00175 Oxidoreductase NAD-binding domain ATY48_16680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATY48_16680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATY48_16685 PF01507 Phosphoadenosine phosphosulfate reductase family ATY48_16705 PF00512 His Kinase A (phospho-acceptor) domain ATY48_16705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_16705 PF00672 HAMP domain ATY48_16705 PF00072 Response regulator receiver domain ATY48_16705 PF01627 Hpt domain ATY48_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_16715 PF03466 LysR substrate binding domain ATY48_16720 PF10414 Sirohaem synthase dimerisation region ATY48_16720 PF14824 Sirohaem biosynthesis protein central ATY48_16720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY48_16725 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_16740 PF01661 Macro domain ATY48_16745 PF00274 Fructose-bisphosphate aldolase class-I ATY48_16750 PF00224 Pyruvate kinase, barrel domain ATY48_16750 PF02887 Pyruvate kinase, alpha/beta domain ATY48_16760 PF00162 Phosphoglycerate kinase ATY48_16790 PF18011 C-terminal domain found in long catalases ATY48_16790 PF06628 Catalase-related immune-responsive ATY48_16790 PF00199 Catalase ATY48_16805 PF05598 Transposase domain (DUF772) ATY48_16805 PF01609 Transposase DDE domain ATY48_16825 PF12833 Helix-turn-helix domain ATY48_16825 PF02311 AraC-like ligand binding domain ATY48_16845 PF05598 Transposase domain (DUF772) ATY48_16860 PF07676 WD40-like Beta Propeller Repeat ATY48_16860 PF00326 Prolyl oligopeptidase family ATY48_16860 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY48_16880 PF05598 Transposase domain (DUF772) ATY48_16880 PF01609 Transposase DDE domain ATY48_16885 PF03169 OPT oligopeptide transporter protein ATY48_16900 PF02811 PHP domain ATY48_16900 PF14579 Helix-hairpin-helix motif ATY48_16900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY48_16900 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY48_16915 PF01726 LexA DNA binding domain ATY48_16915 PF00717 Peptidase S24-like ATY48_16945 PF13456 Reverse transcriptase-like ATY48_16945 PF00300 Histidine phosphatase superfamily (branch 1) ATY48_16985 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY48_16985 PF18766 SWI2/SNF2 ATPase ATY48_16985 PF11867 Domain of unknown function (DUF3387) ATY48_17000 PF01420 Type I restriction modification DNA specificity domain ATY48_17005 PF01609 Transposase DDE domain ATY48_17005 PF05598 Transposase domain (DUF772) ATY48_17015 PF08780 Nucleotidyltransferase substrate binding protein like ATY48_17020 PF02384 N-6 DNA Methylase ATY48_17040 PF04851 Type III restriction enzyme, res subunit ATY48_17040 PF08463 EcoEI R protein C-terminal ATY48_17040 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY48_17040 PF00271 Helicase conserved C-terminal domain ATY48_17050 PF02384 N-6 DNA Methylase ATY48_17055 PF01420 Type I restriction modification DNA specificity domain ATY48_17120 PF04717 Type VI secretion system, phage-baseplate injector ATY48_17120 PF16671 Actin cross-linking domain ATY48_17130 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_17130 PF07724 AAA domain (Cdc48 subfamily) ATY48_17130 PF17871 AAA lid domain ATY48_17130 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_17185 PF04717 Type VI secretion system, phage-baseplate injector ATY48_17185 PF16671 Actin cross-linking domain ATY48_17240 PF16671 Actin cross-linking domain ATY48_17240 PF04717 Type VI secretion system, phage-baseplate injector ATY48_17270 PF03781 Sulfatase-modifying factor enzyme 1 ATY48_17280 PF03781 Sulfatase-modifying factor enzyme 1 ATY48_17290 PF04717 Type VI secretion system, phage-baseplate injector ATY48_17305 PF00691 OmpA family ATY48_17305 PF04972 BON domain ATY48_17340 PF01527 Transposase ATY48_17345 PF05598 Transposase domain (DUF772) ATY48_17350 PF02222 ATP-grasp domain ATY48_17375 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY48_17390 PF00072 Response regulator receiver domain ATY48_17390 PF00196 Bacterial regulatory proteins, luxR family ATY48_17395 PF07730 Histidine kinase ATY48_17405 PF05209 Septum formation inhibitor MinC, N-terminal domain ATY48_17405 PF03775 Septum formation inhibitor MinC, C-terminal domain ATY48_17410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ATY48_17415 PF03776 Septum formation topological specificity factor MinE ATY48_17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_17425 PF00512 His Kinase A (phospho-acceptor) domain ATY48_17425 PF08521 Two-component sensor kinase N-terminal ATY48_17430 PF00486 Transcriptional regulatory protein, C terminal ATY48_17430 PF00072 Response regulator receiver domain ATY48_17435 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ATY48_17445 PF08019 Phosphoethanolamine transferase EptA/EptB ATY48_17445 PF00884 Sulfatase ATY48_17465 PF00664 ABC transporter transmembrane region ATY48_17465 PF00005 ABC transporter ATY48_17465 PF03412 Peptidase C39 family ATY48_17485 PF02347 Glycine cleavage system P-protein ATY48_17520 PF01527 Transposase ATY48_17530 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_17545 PF01196 Ribosomal protein L17 ATY48_17550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATY48_17550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATY48_17550 PF01000 RNA polymerase Rpb3/RpoA insert domain ATY48_17555 PF01479 S4 domain ATY48_17555 PF00163 Ribosomal protein S4/S9 N-terminal domain ATY48_17560 PF00411 Ribosomal protein S11 ATY48_17565 PF00416 Ribosomal protein S13/S18 ATY48_17570 PF00344 SecY translocase ATY48_17575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATY48_17580 PF00327 Ribosomal protein L30p/L7e ATY48_17585 PF03719 Ribosomal protein S5, C-terminal domain ATY48_17585 PF00333 Ribosomal protein S5, N-terminal domain ATY48_17590 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATY48_17595 PF00347 Ribosomal protein L6 ATY48_17600 PF00410 Ribosomal protein S8 ATY48_17605 PF00253 Ribosomal protein S14p/S29e ATY48_17610 PF00673 ribosomal L5P family C-terminus ATY48_17610 PF00281 Ribosomal protein L5 ATY48_17615 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATY48_17615 PF00467 KOW motif ATY48_17620 PF00238 Ribosomal protein L14p/L23e ATY48_17625 PF00366 Ribosomal protein S17 ATY48_17630 PF00831 Ribosomal L29 protein ATY48_17635 PF00252 Ribosomal protein L16p/L10e ATY48_17640 PF00189 Ribosomal protein S3, C-terminal domain ATY48_17640 PF07650 KH domain ATY48_17645 PF00237 Ribosomal protein L22p/L17e ATY48_17650 PF00203 Ribosomal protein S19 ATY48_17655 PF03947 Ribosomal Proteins L2, C-terminal domain ATY48_17655 PF00181 Ribosomal Proteins L2, RNA binding domain ATY48_17660 PF00276 Ribosomal protein L23 ATY48_17665 PF00573 Ribosomal protein L4/L1 family ATY48_17670 PF00297 Ribosomal protein L3 ATY48_17675 PF00338 Ribosomal protein S10p/S20e ATY48_17685 PF03143 Elongation factor Tu C-terminal domain ATY48_17685 PF03144 Elongation factor Tu domain 2 ATY48_17685 PF00009 Elongation factor Tu GTP binding domain ATY48_17690 PF14492 Elongation Factor G, domain II ATY48_17690 PF00679 Elongation factor G C-terminus ATY48_17690 PF03144 Elongation factor Tu domain 2 ATY48_17690 PF00009 Elongation factor Tu GTP binding domain ATY48_17690 PF03764 Elongation factor G, domain IV ATY48_17695 PF00177 Ribosomal protein S7p/S5e ATY48_17700 PF00164 Ribosomal protein S12/S23 ATY48_17705 PF04998 RNA polymerase Rpb1, domain 5 ATY48_17705 PF05000 RNA polymerase Rpb1, domain 4 ATY48_17705 PF04983 RNA polymerase Rpb1, domain 3 ATY48_17705 PF00623 RNA polymerase Rpb1, domain 2 ATY48_17705 PF04997 RNA polymerase Rpb1, domain 1 ATY48_17710 PF10385 RNA polymerase beta subunit external 1 domain ATY48_17710 PF04563 RNA polymerase beta subunit ATY48_17710 PF04565 RNA polymerase Rpb2, domain 3 ATY48_17710 PF04561 RNA polymerase Rpb2, domain 2 ATY48_17710 PF00562 RNA polymerase Rpb2, domain 6 ATY48_17710 PF04560 RNA polymerase Rpb2, domain 7 ATY48_17715 PF00542 Ribosomal protein L7/L12 C-terminal domain ATY48_17715 PF16320 Ribosomal protein L7/L12 dimerisation domain ATY48_17720 PF00466 Ribosomal protein L10 ATY48_17725 PF00687 Ribosomal protein L1p/L10e family ATY48_17730 PF03946 Ribosomal protein L11, N-terminal domain ATY48_17730 PF00298 Ribosomal protein L11, RNA binding domain ATY48_17735 PF00467 KOW motif ATY48_17735 PF02357 Transcription termination factor nusG ATY48_17740 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ATY48_17750 PF03144 Elongation factor Tu domain 2 ATY48_17750 PF03143 Elongation factor Tu C-terminal domain ATY48_17750 PF00009 Elongation factor Tu GTP binding domain ATY48_17770 PF01926 50S ribosome-binding GTPase ATY48_17770 PF06071 Protein of unknown function (DUF933) ATY48_17775 PF01195 Peptidyl-tRNA hydrolase ATY48_17780 PF14693 Ribosomal protein TL5, C-terminal domain ATY48_17780 PF01386 Ribosomal L25p family ATY48_17785 PF14572 Phosphoribosyl synthetase-associated domain ATY48_17785 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATY48_17795 PF08544 GHMP kinases C terminal ATY48_17795 PF00288 GHMP kinases N terminal domain ATY48_17800 PF03550 Outer membrane lipoprotein LolB ATY48_17810 PF01488 Shikimate / quinate 5-dehydrogenase ATY48_17810 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATY48_17810 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATY48_17815 PF03462 PCRF domain ATY48_17815 PF00472 RF-1 domain ATY48_17825 PF00994 Probable molybdopterin binding domain ATY48_17830 PF03976 Polyphosphate kinase 2 (PPK2) ATY48_17840 PF00708 Acylphosphatase ATY48_17845 PF08534 Redoxin ATY48_17850 PF03631 Virulence factor BrkB ATY48_17855 PF03358 NADPH-dependent FMN reductase ATY48_17865 PF17189 Glycosyl hydrolase family 30 beta sandwich domain ATY48_17865 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain ATY48_17875 PF04073 Aminoacyl-tRNA editing domain ATY48_17885 PF01063 Amino-transferase class IV ATY48_17915 PF02233 NAD(P) transhydrogenase beta subunit ATY48_17920 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY48_17940 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY48_17940 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ATY48_17940 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ATY48_17955 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY48_17955 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY48_17955 PF00476 DNA polymerase family A ATY48_17955 PF01612 3'-5' exonuclease ATY48_17960 PF00293 NUDIX domain ATY48_17970 PF00561 alpha/beta hydrolase fold ATY48_18000 PF17827 PrmC N-terminal domain ATY48_18000 PF05175 Methyltransferase small domain ATY48_18005 PF00578 AhpC/TSA family ATY48_18005 PF10417 C-terminal domain of 1-Cys peroxiredoxin ATY48_18010 PF13192 Thioredoxin domain ATY48_18010 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_18015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_18015 PF03466 LysR substrate binding domain ATY48_18020 PF03449 Transcription elongation factor, N-terminal ATY48_18020 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY48_18025 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATY48_18045 PF01625 Peptide methionine sulfoxide reductase ATY48_18080 PF00462 Glutaredoxin ATY48_18085 PF01435 Peptidase family M48 ATY48_18085 PF13181 Tetratricopeptide repeat ATY48_18090 PF00072 Response regulator receiver domain ATY48_18090 PF00486 Transcriptional regulatory protein, C terminal ATY48_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_18095 PF00512 His Kinase A (phospho-acceptor) domain ATY48_18095 PF11808 Phosphate regulon sensor protein PhoR ATY48_18095 PF00989 PAS fold ATY48_18100 PF13089 Polyphosphate kinase N-terminal domain ATY48_18100 PF17941 Polyphosphate kinase C-terminal domain 1 ATY48_18100 PF13090 Polyphosphate kinase C-terminal domain 2 ATY48_18100 PF02503 Polyphosphate kinase middle domain ATY48_18105 PF02541 Ppx/GppA phosphatase family ATY48_18110 PF00534 Glycosyl transferases group 1 ATY48_18110 PF13439 Glycosyltransferase Family 4 ATY48_18115 PF01569 PAP2 superfamily ATY48_18120 PF00149 Calcineurin-like phosphoesterase ATY48_18130 PF04305 Protein of unknown function (DUF455) ATY48_18135 PF00156 Phosphoribosyl transferase domain ATY48_18150 PF08245 Mur ligase middle domain ATY48_18150 PF02875 Mur ligase family, glutamate ligase domain ATY48_18155 PF00300 Histidine phosphatase superfamily (branch 1) ATY48_18160 PF10459 Peptidase S46 ATY48_18165 PF05506 Domain of unknown function (DUF756) ATY48_18165 PF04185 Phosphoesterase family ATY48_18175 PF00107 Zinc-binding dehydrogenase ATY48_18175 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_18185 PF12857 TOBE-like domain ATY48_18185 PF00005 ABC transporter ATY48_18185 PF17850 CysA C-terminal regulatory domain ATY48_18190 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_18195 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_18205 PF00155 Aminotransferase class I and II ATY48_18215 PF00849 RNA pseudouridylate synthase ATY48_18225 PF00691 OmpA family ATY48_18225 PF05736 OprF membrane domain ATY48_18230 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_18230 PF00107 Zinc-binding dehydrogenase ATY48_18235 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_18235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY48_18245 PF01527 Transposase ATY48_18275 PF00512 His Kinase A (phospho-acceptor) domain ATY48_18275 PF01627 Hpt domain ATY48_18275 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY48_18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_18275 PF00072 Response regulator receiver domain ATY48_18275 PF00672 HAMP domain ATY48_18280 PF00072 Response regulator receiver domain ATY48_18280 PF00990 Diguanylate cyclase, GGDEF domain ATY48_18300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ATY48_18300 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY48_18310 PF00665 Integrase core domain ATY48_18310 PF13936 Helix-turn-helix domain ATY48_18320 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_18360 PF01728 FtsJ-like methyltransferase ATY48_18360 PF18125 RlmM ferredoxin-like domain ATY48_18365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY48_18365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY48_18370 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY48_18390 PF00378 Enoyl-CoA hydratase/isomerase ATY48_18395 PF00171 Aldehyde dehydrogenase family ATY48_18400 PF13193 AMP-binding enzyme C-terminal domain ATY48_18400 PF00501 AMP-binding enzyme ATY48_18405 PF03466 LysR substrate binding domain ATY48_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_18415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY48_18445 PF01494 FAD binding domain ATY48_18450 PF01494 FAD binding domain ATY48_18460 PF01923 Cobalamin adenosyltransferase ATY48_18465 PF00850 Histone deacetylase domain ATY48_18470 PF03968 OstA-like protein ATY48_18470 PF04453 LPS transport system D ATY48_18475 PF09312 SurA N-terminal domain ATY48_18475 PF00639 PPIC-type PPIASE domain ATY48_18480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ATY48_18485 PF00398 Ribosomal RNA adenine dimethylase ATY48_18490 PF04379 ApaG domain ATY48_18495 PF00149 Calcineurin-like phosphoesterase ATY48_18500 PF00186 Dihydrofolate reductase ATY48_18510 PF00303 Thymidylate synthase ATY48_18515 PF01790 Prolipoprotein diacylglyceryl transferase ATY48_18535 PF01219 Prokaryotic diacylglycerol kinase ATY48_18545 PF08521 Two-component sensor kinase N-terminal ATY48_18545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_18545 PF00512 His Kinase A (phospho-acceptor) domain ATY48_18550 PF00072 Response regulator receiver domain ATY48_18550 PF00486 Transcriptional regulatory protein, C terminal ATY48_18555 PF13472 GDSL-like Lipase/Acylhydrolase family ATY48_18560 PF00005 ABC transporter ATY48_18570 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ATY48_18580 PF00005 ABC transporter ATY48_18605 PF00248 Aldo/keto reductase family ATY48_18615 PF07662 Na+ dependent nucleoside transporter C-terminus ATY48_18615 PF01773 Na+ dependent nucleoside transporter N-terminus ATY48_18615 PF07670 Nucleoside recognition ATY48_18620 PF00294 pfkB family carbohydrate kinase ATY48_18635 PF01207 Dihydrouridine synthase (Dus) ATY48_18640 PF13649 Methyltransferase domain ATY48_18650 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATY48_18650 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATY48_18650 PF02772 S-adenosylmethionine synthetase, central domain ATY48_18660 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_18665 PF00328 Histidine phosphatase superfamily (branch 2) ATY48_18690 PF00311 Phosphoenolpyruvate carboxylase ATY48_18700 PF05221 S-adenosyl-L-homocysteine hydrolase ATY48_18700 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ATY48_18705 PF13649 Methyltransferase domain ATY48_18735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY48_18750 PF09286 Pro-kumamolisin, activation domain ATY48_18750 PF00082 Subtilase family ATY48_18755 PF00550 Phosphopantetheine attachment site ATY48_18755 PF00698 Acyl transferase domain ATY48_18755 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_18755 PF00107 Zinc-binding dehydrogenase ATY48_18755 PF16197 Ketoacyl-synthetase C-terminal extension ATY48_18755 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY48_18755 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY48_18755 PF08659 KR domain ATY48_18755 PF14765 Polyketide synthase dehydratase ATY48_18765 PF02219 Methylenetetrahydrofolate reductase ATY48_18780 PF00293 NUDIX domain ATY48_18790 PF07517 SecA DEAD-like domain ATY48_18790 PF07516 SecA Wing and Scaffold domain ATY48_18790 PF01043 SecA preprotein cross-linking domain ATY48_18790 PF02810 SEC-C motif ATY48_18795 PF01476 LysM domain ATY48_18795 PF01551 Peptidase family M23 ATY48_18805 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ATY48_18810 PF00091 Tubulin/FtsZ family, GTPase domain ATY48_18810 PF12327 FtsZ family, C-terminal domain ATY48_18815 PF02491 SHS2 domain inserted in FTSA ATY48_18820 PF03799 Cell division protein FtsQ ATY48_18820 PF08478 POTRA domain, FtsQ-type ATY48_18825 PF07478 D-ala D-ala ligase C-terminus ATY48_18825 PF01820 D-ala D-ala ligase N-terminus ATY48_18830 PF01225 Mur ligase family, catalytic domain ATY48_18830 PF02875 Mur ligase family, glutamate ligase domain ATY48_18830 PF08245 Mur ligase middle domain ATY48_18835 PF03033 Glycosyltransferase family 28 N-terminal domain ATY48_18835 PF04101 Glycosyltransferase family 28 C-terminal domain ATY48_18840 PF01098 Cell cycle protein ATY48_18845 PF00953 Glycosyl transferase family 4 ATY48_18850 PF08245 Mur ligase middle domain ATY48_18850 PF02875 Mur ligase family, glutamate ligase domain ATY48_18850 PF01225 Mur ligase family, catalytic domain ATY48_18855 PF08245 Mur ligase middle domain ATY48_18855 PF02875 Mur ligase family, glutamate ligase domain ATY48_18855 PF01225 Mur ligase family, catalytic domain ATY48_18860 PF00905 Penicillin binding protein transpeptidase domain ATY48_18860 PF03717 Penicillin-binding Protein dimerisation domain ATY48_18865 PF04999 Cell division protein FtsL ATY48_18870 PF01795 MraW methylase family ATY48_18875 PF02381 MraZ protein, putative antitoxin-like ATY48_18890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY48_18900 PF02021 Uncharacterised protein family UPF0102 ATY48_18905 PF04307 LexA-binding, inner membrane-associated putative hydrolase ATY48_18910 PF01565 FAD binding domain ATY48_18910 PF02913 FAD linked oxidases, C-terminal domain ATY48_18915 PF00486 Transcriptional regulatory protein, C terminal ATY48_18915 PF00072 Response regulator receiver domain ATY48_18920 PF00512 His Kinase A (phospho-acceptor) domain ATY48_18920 PF13493 Domain of unknown function (DUF4118) ATY48_18920 PF13492 GAF domain ATY48_18920 PF02702 Osmosensitive K+ channel His kinase sensor domain ATY48_18920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_18925 PF02669 K+-transporting ATPase, c chain ATY48_18935 PF03814 Potassium-transporting ATPase A subunit ATY48_18960 PF00586 AIR synthase related protein, N-terminal domain ATY48_18960 PF02769 AIR synthase related protein, C-terminal domain ATY48_18965 PF01029 NusB family ATY48_18970 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATY48_18975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATY48_18975 PF00925 GTP cyclohydrolase II ATY48_18980 PF00677 Lumazine binding domain ATY48_18990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATY48_18990 PF01872 RibD C-terminal domain ATY48_19000 PF03477 ATP cone domain ATY48_19010 PF00464 Serine hydroxymethyltransferase ATY48_19030 PF00005 ABC transporter ATY48_19030 PF12848 ABC transporter ATY48_19050 PF00756 Putative esterase ATY48_19060 PF08240 Alcohol dehydrogenase GroES-like domain ATY48_19060 PF00107 Zinc-binding dehydrogenase ATY48_19065 PF02583 Metal-sensitive transcriptional repressor ATY48_19075 PF00072 Response regulator receiver domain ATY48_19075 PF00486 Transcriptional regulatory protein, C terminal ATY48_19080 PF00512 His Kinase A (phospho-acceptor) domain ATY48_19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_19080 PF16527 Two-component sensor protein CpxA, periplasmic domain ATY48_19080 PF00672 HAMP domain ATY48_19115 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATY48_19130 PF01926 50S ribosome-binding GTPase ATY48_19135 PF00034 Cytochrome c ATY48_19155 PF02028 BCCT, betaine/carnitine/choline family transporter ATY48_19165 PF01527 Transposase ATY48_19170 PF05598 Transposase domain (DUF772) ATY48_19170 PF01609 Transposase DDE domain ATY48_19175 PF13291 ACT domain ATY48_19175 PF00291 Pyridoxal-phosphate dependent enzyme ATY48_19180 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_19190 PF05598 Transposase domain (DUF772) ATY48_19190 PF01609 Transposase DDE domain ATY48_19195 PF01609 Transposase DDE domain ATY48_19195 PF05598 Transposase domain (DUF772) ATY48_19200 PF01527 Transposase ATY48_19220 PF01966 HD domain ATY48_19220 PF12627 Probable RNA and SrmB- binding site of polymerase A ATY48_19220 PF01743 Poly A polymerase head domain ATY48_19235 PF05598 Transposase domain (DUF772) ATY48_19235 PF01609 Transposase DDE domain ATY48_19240 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_19270 PF14883 Hypothetical glycosyl hydrolase family 13 ATY48_19270 PF01522 Polysaccharide deacetylase ATY48_19275 PF00535 Glycosyl transferase family 2 ATY48_19285 PF01979 Amidohydrolase family ATY48_19290 PF01380 SIS domain ATY48_19295 PF00356 Bacterial regulatory proteins, lacI family ATY48_19300 PF07690 Major Facilitator Superfamily ATY48_19320 PF02837 Glycosyl hydrolases family 2, sugar binding domain ATY48_19320 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ATY48_19320 PF16355 Domain of unknown function (DUF4982) ATY48_19320 PF00703 Glycosyl hydrolases family 2 ATY48_19320 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ATY48_19355 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY48_19360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_19360 PF00512 His Kinase A (phospho-acceptor) domain ATY48_19365 PF00072 Response regulator receiver domain ATY48_19370 PF08446 PAS fold ATY48_19370 PF00512 His Kinase A (phospho-acceptor) domain ATY48_19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_19370 PF01590 GAF domain ATY48_19370 PF00360 Phytochrome region ATY48_19375 PF04972 BON domain ATY48_19380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY48_19380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY48_19385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY48_19385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ATY48_19425 PF01467 Cytidylyltransferase-like ATY48_19425 PF00293 NUDIX domain ATY48_19435 PF05598 Transposase domain (DUF772) ATY48_19445 PF03572 Peptidase family S41 ATY48_19445 PF11818 C-terminal domain of tail specific protease (DUF3340) ATY48_19445 PF17804 Tail specific protease N-terminal domain ATY48_19445 PF00595 PDZ domain ATY48_19455 PF07669 Eco57I restriction-modification methylase ATY48_19455 PF12950 TaqI-like C-terminal specificity domain ATY48_19460 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ATY48_19460 PF04055 Radical SAM superfamily ATY48_19465 PF03099 Biotin/lipoate A/B protein ligase family ATY48_19470 PF04359 Protein of unknown function (DUF493) ATY48_19480 PF07943 Penicillin-binding protein 5, C-terminal domain ATY48_19480 PF00768 D-alanyl-D-alanine carboxypeptidase ATY48_19490 PF05036 Sporulation related domain ATY48_19490 PF03330 Lytic transglycolase ATY48_19495 PF13406 Transglycosylase SLT domain ATY48_19530 PF01098 Cell cycle protein ATY48_19535 PF03717 Penicillin-binding Protein dimerisation domain ATY48_19535 PF00905 Penicillin binding protein transpeptidase domain ATY48_19545 PF04085 rod shape-determining protein MreC ATY48_19555 PF00294 pfkB family carbohydrate kinase ATY48_19575 PF13673 Acetyltransferase (GNAT) domain ATY48_19590 PF13533 Biotin-lipoyl like ATY48_19600 PF01209 ubiE/COQ5 methyltransferase family ATY48_19605 PF17152 Periplasmic sensor domain ATY48_19605 PF00990 Diguanylate cyclase, GGDEF domain ATY48_19610 PF01433 Peptidase family M1 domain ATY48_19610 PF11838 ERAP1-like C-terminal domain ATY48_19625 PF07724 AAA domain (Cdc48 subfamily) ATY48_19625 PF10431 C-terminal, D2-small domain, of ClpB protein ATY48_19625 PF00004 ATPase family associated with various cellular activities (AAA) ATY48_19630 PF00227 Proteasome subunit ATY48_19635 PF02899 Phage integrase, N-terminal SAM-like domain ATY48_19635 PF00589 Phage integrase family ATY48_19645 PF01678 Diaminopimelate epimerase ATY48_19660 PF00326 Prolyl oligopeptidase family ATY48_19660 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY48_19665 PF00155 Aminotransferase class I and II ATY48_19675 PF00326 Prolyl oligopeptidase family ATY48_19675 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY48_19700 PF03900 Porphobilinogen deaminase, C-terminal domain ATY48_19700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATY48_19705 PF00072 Response regulator receiver domain ATY48_19705 PF04397 LytTr DNA-binding domain ATY48_19710 PF07694 5TMR of 5TMR-LYT ATY48_19710 PF06580 Histidine kinase ATY48_19720 PF13632 Glycosyl transferase family group 2 ATY48_19725 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_19740 PF08448 PAS fold ATY48_19740 PF00990 Diguanylate cyclase, GGDEF domain ATY48_19750 PF00916 Sulfate permease family ATY48_19750 PF01740 STAS domain ATY48_19755 PF00553 Cellulose binding domain ATY48_19755 PF00150 Cellulase (glycosyl hydrolase family 5) ATY48_19765 PF00672 HAMP domain ATY48_19765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY48_19765 PF02203 Tar ligand binding domain homologue ATY48_19770 PF03707 Bacterial signalling protein N terminal repeat ATY48_19770 PF00990 Diguanylate cyclase, GGDEF domain ATY48_19770 PF00563 EAL domain ATY48_19795 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_19810 PF01204 Trehalase ATY48_19830 PF01544 CorA-like Mg2+ transporter protein ATY48_19840 PF00324 Amino acid permease ATY48_19845 PF00553 Cellulose binding domain ATY48_19845 PF00041 Fibronectin type III domain ATY48_19845 PF01341 Glycosyl hydrolases family 6 ATY48_19850 PF03330 Lytic transglycolase ATY48_19855 PF00892 EamA-like transporter family ATY48_19880 PF07759 Protein of unknown function (DUF1615) ATY48_19915 PF00106 short chain dehydrogenase ATY48_19930 PF01527 Transposase ATY48_19940 PF04715 Anthranilate synthase component I, N terminal region ATY48_19940 PF00425 chorismate binding enzyme ATY48_19945 PF00781 Diacylglycerol kinase catalytic domain ATY48_19950 PF00583 Acetyltransferase (GNAT) family ATY48_19955 PF00834 Ribulose-phosphate 3 epimerase family ATY48_19960 PF05099 Tellurite resistance protein TerB ATY48_19960 PF00226 DnaJ domain ATY48_19980 PF01447 Thermolysin metallopeptidase, catalytic domain ATY48_19980 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY48_19980 PF01483 Proprotein convertase P-domain ATY48_19980 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY48_19985 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY48_19985 PF01447 Thermolysin metallopeptidase, catalytic domain ATY48_19985 PF01483 Proprotein convertase P-domain ATY48_19985 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY48_19990 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY48_19990 PF01447 Thermolysin metallopeptidase, catalytic domain ATY48_19990 PF03413 Peptidase propeptide and YPEB domain ATY48_19990 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY48_20005 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ATY48_20005 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY48_20005 PF13244 Domain of unknown function (DUF4040) ATY48_20005 PF00361 Proton-conducting membrane transporter ATY48_20010 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY48_20015 PF00361 Proton-conducting membrane transporter ATY48_20025 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ATY48_20030 PF03334 Na+/H+ antiporter subunit ATY48_20035 PF05598 Transposase domain (DUF772) ATY48_20035 PF01609 Transposase DDE domain ATY48_20040 PF04209 homogentisate 1,2-dioxygenase ATY48_20045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY48_20050 PF01047 MarR family ATY48_20060 PF00854 POT family ATY48_20065 PF03301 Tryptophan 2,3-dioxygenase ATY48_20105 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_20115 PF02803 Thiolase, C-terminal domain ATY48_20115 PF00108 Thiolase, N-terminal domain ATY48_20165 PF05598 Transposase domain (DUF772) ATY48_20165 PF01609 Transposase DDE domain ATY48_20195 PF01427 D-ala-D-ala dipeptidase ATY48_20200 PF01510 N-acetylmuramoyl-L-alanine amidase ATY48_20210 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY48_20210 PF13378 Enolase C-terminal domain-like ATY48_20240 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_20250 PF13520 Amino acid permease ATY48_20265 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_20280 PF05360 yiaA/B two helix domain ATY48_20285 PF07995 Glucose / Sorbosone dehydrogenase ATY48_20315 PF13936 Helix-turn-helix domain ATY48_20315 PF00665 Integrase core domain ATY48_20320 PF14310 Fibronectin type III-like domain ATY48_20320 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY48_20320 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_20325 PF02152 Dihydroneopterin aldolase ATY48_20330 PF00814 Glycoprotease family ATY48_20335 PF01165 Ribosomal protein S21 ATY48_20340 PF09424 Yqey-like protein ATY48_20345 PF03631 Virulence factor BrkB ATY48_20350 PF08278 DNA primase DnaG DnaB-binding ATY48_20350 PF10410 DnaB-helicase binding domain of primase ATY48_20350 PF01807 CHC2 zinc finger ATY48_20350 PF08275 DNA primase catalytic core, N-terminal domain ATY48_20370 PF13593 SBF-like CPA transporter family (DUF4137) ATY48_20380 PF01040 UbiA prenyltransferase family ATY48_20405 PF00510 Cytochrome c oxidase subunit III ATY48_20410 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ATY48_20415 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY48_20420 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ATY48_20420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY48_20430 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY48_20430 PF00171 Aldehyde dehydrogenase family ATY48_20430 PF14850 DNA-binding domain of Proline dehydrogenase ATY48_20430 PF01619 Proline dehydrogenase ATY48_20435 PF01527 Transposase ATY48_20450 PF00210 Ferritin-like domain ATY48_20460 PF00293 NUDIX domain ATY48_20475 PF00380 Ribosomal protein S9/S16 ATY48_20480 PF00572 Ribosomal protein L13 ATY48_20485 PF03232 Ubiquinone biosynthesis protein COQ7 ATY48_20490 PF00893 Small Multidrug Resistance protein ATY48_20495 PF02675 S-adenosylmethionine decarboxylase ATY48_20500 PF00325 Bacterial regulatory proteins, crp family ATY48_20500 PF00027 Cyclic nucleotide-binding domain ATY48_20510 PF00218 Indole-3-glycerol phosphate synthase ATY48_20515 PF02885 Glycosyl transferase family, helical bundle domain ATY48_20515 PF00591 Glycosyl transferase family, a/b domain ATY48_20530 PF00117 Glutamine amidotransferase class-I ATY48_20540 PF01527 Transposase ATY48_20545 PF13276 HTH-like domain ATY48_20545 PF13683 Integrase core domain ATY48_20555 PF03971 Monomeric isocitrate dehydrogenase ATY48_20565 PF05598 Transposase domain (DUF772) ATY48_20605 PF05598 Transposase domain (DUF772) ATY48_20605 PF01609 Transposase DDE domain ATY48_20615 PF00872 Transposase, Mutator family ATY48_20620 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ATY48_20620 PF14489 QueF-like protein ATY48_20630 PF01546 Peptidase family M20/M25/M40 ATY48_20630 PF07687 Peptidase dimerisation domain ATY48_20635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY48_20640 PF00873 AcrB/AcrD/AcrF family ATY48_20645 PF00873 AcrB/AcrD/AcrF family ATY48_20650 PF07063 Domain of unknown function (DUF1338) ATY48_20680 PF00581 Rhodanese-like domain ATY48_20685 PF02556 Preprotein translocase subunit SecB ATY48_20690 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATY48_20690 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATY48_20700 PF00205 Thiamine pyrophosphate enzyme, central domain ATY48_20700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY48_20700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY48_20705 PF00512 His Kinase A (phospho-acceptor) domain ATY48_20705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_20710 PF00158 Sigma-54 interaction domain ATY48_20710 PF00072 Response regulator receiver domain ATY48_20710 PF02954 Bacterial regulatory protein, Fis family ATY48_20725 PF07690 Major Facilitator Superfamily ATY48_20730 PF00588 SpoU rRNA Methylase family ATY48_20745 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY48_20745 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY48_20750 PF13784 Fic/DOC family N-terminal ATY48_20750 PF02661 Fic/DOC family ATY48_20755 PF01555 DNA methylase ATY48_20765 PF00561 alpha/beta hydrolase fold ATY48_20770 PF03692 Putative zinc- or iron-chelating domain ATY48_20775 PF00501 AMP-binding enzyme ATY48_20780 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ATY48_20785 PF05598 Transposase domain (DUF772) ATY48_20795 PF01966 HD domain ATY48_20795 PF11871 Domain of unknown function (DUF3391) ATY48_20800 PF07690 Major Facilitator Superfamily ATY48_20830 PF00132 Bacterial transferase hexapeptide (six repeats) ATY48_20835 PF03692 Putative zinc- or iron-chelating domain ATY48_20840 PF00920 Dehydratase family ATY48_20845 PF13495 Phage integrase, N-terminal SAM-like domain ATY48_20845 PF00589 Phage integrase family ATY48_20850 PF05598 Transposase domain (DUF772) ATY48_20865 PF05598 Transposase domain (DUF772) ATY48_20865 PF01609 Transposase DDE domain ATY48_20875 PF01218 Coproporphyrinogen III oxidase ATY48_20880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY48_20880 PF00476 DNA polymerase family A ATY48_20880 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY48_20880 PF01612 3'-5' exonuclease ATY48_20890 PF13683 Integrase core domain ATY48_20890 PF13276 HTH-like domain ATY48_20895 PF01527 Transposase ATY48_20905 PF00456 Transketolase, thiamine diphosphate binding domain ATY48_20905 PF17831 Pyruvate dehydrogenase E1 component middle domain ATY48_20930 PF03377 TAL effector repeat ATY48_20940 PF05598 Transposase domain (DUF772) ATY48_20980 PF04264 YceI-like domain ATY48_20985 PF00881 Nitroreductase family ATY48_21020 PF02592 Putative vitamin uptake transporter ATY48_21025 PF03710 Glutamate-ammonia ligase adenylyltransferase ATY48_21025 PF08335 GlnD PII-uridylyltransferase ATY48_21035 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY48_21080 PF00793 DAHP synthetase I family ATY48_21090 PF07715 TonB-dependent Receptor Plug Domain ATY48_21090 PF00593 TonB dependent receptor ATY48_21100 PF00118 TCP-1/cpn60 chaperonin family ATY48_21105 PF00166 Chaperonin 10 Kd subunit ATY48_21135 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY48_21145 PF04545 Sigma-70, region 4 ATY48_21145 PF04542 Sigma-70 region 2 ATY48_21150 PF03167 Uracil DNA glycosylase superfamily ATY48_21155 PF00072 Response regulator receiver domain ATY48_21155 PF01339 CheB methylesterase ATY48_21160 PF18075 FtsX extracellular domain ATY48_21165 PF00005 ABC transporter ATY48_21170 PF12300 ATP-dependent RNA helicase RhlB ATY48_21170 PF00271 Helicase conserved C-terminal domain ATY48_21170 PF00270 DEAD/DEAH box helicase ATY48_21175 PF00085 Thioredoxin ATY48_21180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY48_21180 PF07498 Rho termination factor, N-terminal domain ATY48_21180 PF07497 Rho termination factor, RNA-binding domain ATY48_21200 PF01103 Surface antigen ATY48_21200 PF17243 POTRA domain TamA domain 1 ATY48_21205 PF04357 TamB, inner membrane protein subunit of TAM complex ATY48_21235 PF07977 FabA-like domain ATY48_21240 PF01553 Acyltransferase ATY48_21255 PF04820 Tryptophan halogenase ATY48_21305 PF01638 HxlR-like helix-turn-helix ATY48_21310 PF05368 NmrA-like family ATY48_21320 PF03812 2-keto-3-deoxygluconate permease ATY48_21325 PF01717 Cobalamin-independent synthase, Catalytic domain ATY48_21325 PF08267 Cobalamin-independent synthase, N-terminal domain ATY48_21335 PF03358 NADPH-dependent FMN reductase ATY48_21340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_21340 PF03466 LysR substrate binding domain ATY48_21345 PF02677 Epoxyqueuosine reductase QueH ATY48_21355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_21355 PF00512 His Kinase A (phospho-acceptor) domain ATY48_21355 PF00672 HAMP domain ATY48_21360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_21360 PF00512 His Kinase A (phospho-acceptor) domain ATY48_21360 PF00672 HAMP domain ATY48_21365 PF00486 Transcriptional regulatory protein, C terminal ATY48_21365 PF00072 Response regulator receiver domain ATY48_21370 PF00551 Formyl transferase ATY48_21380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY48_21380 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY48_21385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY48_21390 PF02146 Sir2 family ATY48_21400 PF07690 Major Facilitator Superfamily ATY48_21405 PF03466 LysR substrate binding domain ATY48_21405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_21415 PF01026 TatD related DNase ATY48_21445 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_21465 PF00266 Aminotransferase class-V ATY48_21480 PF09349 OHCU decarboxylase ATY48_21480 PF01014 Uricase ATY48_21515 PF01609 Transposase DDE domain ATY48_21515 PF05598 Transposase domain (DUF772) ATY48_21520 PF13936 Helix-turn-helix domain ATY48_21520 PF00665 Integrase core domain ATY48_21525 PF00326 Prolyl oligopeptidase family ATY48_21530 PF00364 Biotin-requiring enzyme ATY48_21530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY48_21530 PF02785 Biotin carboxylase C-terminal domain ATY48_21530 PF00289 Biotin carboxylase, N-terminal domain ATY48_21535 PF01039 Carboxyl transferase domain ATY48_21540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY48_21540 PF02770 Acyl-CoA dehydrogenase, middle domain ATY48_21540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY48_21600 PF02492 CobW/HypB/UreG, nucleotide-binding domain ATY48_21600 PF07683 Cobalamin synthesis protein cobW C-terminal domain ATY48_21620 PF03969 AFG1-like ATPase ATY48_21625 PF00005 ABC transporter ATY48_21625 PF03412 Peptidase C39 family ATY48_21625 PF00664 ABC transporter transmembrane region ATY48_21635 PF07715 TonB-dependent Receptor Plug Domain ATY48_21635 PF00593 TonB dependent receptor ATY48_21640 PF13181 Tetratricopeptide repeat ATY48_21645 PF05746 DALR anticodon binding domain ATY48_21645 PF02092 Glycyl-tRNA synthetase beta subunit ATY48_21650 PF02091 Glycyl-tRNA synthetase alpha subunit ATY48_21655 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY48_21655 PF00437 Type II/IV secretion system protein ATY48_21670 PF00958 GMP synthase C terminal domain ATY48_21670 PF00117 Glutamine amidotransferase class-I ATY48_21680 PF00902 Sec-independent protein translocase protein (TatC) ATY48_21685 PF02416 mttA/Hcf106 family ATY48_21690 PF02416 mttA/Hcf106 family ATY48_21700 PF00762 Ferrochelatase ATY48_21705 PF12697 Alpha/beta hydrolase family ATY48_21720 PF04381 Putative exonuclease, RdgC ATY48_21725 PF01171 PP-loop family ATY48_21735 PF00356 Bacterial regulatory proteins, lacI family ATY48_21740 PF03648 Glycosyl hydrolase family 67 N-terminus ATY48_21740 PF07477 Glycosyl hydrolase family 67 C-terminus ATY48_21740 PF07488 Glycosyl hydrolase family 67 middle domain ATY48_21750 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY48_21750 PF13378 Enolase C-terminal domain-like ATY48_21755 PF04616 Glycosyl hydrolases family 43 ATY48_21755 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY48_21760 PF07691 PA14 domain ATY48_21760 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY48_21760 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY48_21760 PF14310 Fibronectin type III-like domain ATY48_21765 PF08125 Mannitol dehydrogenase C-terminal domain ATY48_21765 PF01232 Mannitol dehydrogenase Rossmann domain ATY48_21785 PF02614 Glucuronate isomerase ATY48_21790 PF00553 Cellulose binding domain ATY48_21790 PF03422 Carbohydrate binding module (family 6) ATY48_21790 PF00331 Glycosyl hydrolase family 10 ATY48_21795 PF00553 Cellulose binding domain ATY48_21795 PF03422 Carbohydrate binding module (family 6) ATY48_21795 PF00331 Glycosyl hydrolase family 10 ATY48_21820 PF04616 Glycosyl hydrolases family 43 ATY48_21850 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY48_21865 PF00487 Fatty acid desaturase ATY48_21870 PF00111 2Fe-2S iron-sulfur cluster binding domain ATY48_21870 PF00175 Oxidoreductase NAD-binding domain ATY48_21870 PF00970 Oxidoreductase FAD-binding domain ATY48_21875 PF00440 Bacterial regulatory proteins, tetR family ATY48_21910 PF01047 MarR family ATY48_21915 PF02566 OsmC-like protein ATY48_22000 PF01381 Helix-turn-helix ATY48_22005 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ATY48_22010 PF13538 UvrD-like helicase C-terminal domain ATY48_22015 PF13361 UvrD-like helicase C-terminal domain ATY48_22015 PF00580 UvrD/REP helicase N-terminal domain ATY48_22015 PF12705 PD-(D/E)XK nuclease superfamily ATY48_22020 PF17946 RecC C-terminal domain ATY48_22060 PF00080 Copper/zinc superoxide dismutase (SODC) ATY48_22065 PF00080 Copper/zinc superoxide dismutase (SODC) ATY48_22070 PF02954 Bacterial regulatory protein, Fis family ATY48_22070 PF00072 Response regulator receiver domain ATY48_22070 PF00158 Sigma-54 interaction domain ATY48_22075 PF00989 PAS fold ATY48_22075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY48_22075 PF00512 His Kinase A (phospho-acceptor) domain ATY48_22080 PF00909 Ammonium Transporter Family ATY48_22085 PF00543 Nitrogen regulatory protein P-II ATY48_22090 PF03951 Glutamine synthetase, beta-Grasp domain ATY48_22090 PF00120 Glutamine synthetase, catalytic domain ATY48_22095 PF02673 Bacitracin resistance protein BacA ATY48_22135 PF03061 Thioesterase superfamily ATY48_22140 PF13091 PLD-like domain ATY48_22155 PF01883 Iron-sulfur cluster assembly protein ATY48_22155 PF10609 NUBPL iron-transfer P-loop NTPase ATY48_22175 PF01381 Helix-turn-helix ATY48_22180 PF13657 HipA N-terminal domain ATY48_22180 PF07804 HipA-like C-terminal domain ATY48_22185 PF10017 Histidine-specific methyltransferase, SAM-dependent ATY48_22190 PF12867 DinB superfamily ATY48_22190 PF03781 Sulfatase-modifying factor enzyme 1 ATY48_22200 PF00528 Binding-protein-dependent transport system inner membrane component ATY48_22205 PF00005 ABC transporter ATY48_22205 PF00571 CBS domain ATY48_22220 PF00005 ABC transporter ATY48_22230 PF01734 Patatin-like phospholipase ATY48_22245 PF05598 Transposase domain (DUF772) ATY48_22245 PF01609 Transposase DDE domain ATY48_22250 PF13683 Integrase core domain ATY48_22250 PF13276 HTH-like domain ATY48_22255 PF01527 Transposase ATY48_22270 PF00248 Aldo/keto reductase family ATY48_22275 PF00107 Zinc-binding dehydrogenase ATY48_22275 PF16884 N-terminal domain of oxidoreductase ATY48_22280 PF00248 Aldo/keto reductase family ATY48_22290 PF00849 RNA pseudouridylate synthase ATY48_22305 PF08482 ATP-dependent helicase C-terminal ATY48_22305 PF00270 DEAD/DEAH box helicase ATY48_22305 PF04408 Helicase associated domain (HA2) ATY48_22305 PF00271 Helicase conserved C-terminal domain ATY48_22310 PF07308 Protein of unknown function (DUF1456) ATY48_22315 PF13378 Enolase C-terminal domain-like ATY48_22315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY48_22320 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY48_22335 PF00248 Aldo/keto reductase family ATY48_22345 PF04616 Glycosyl hydrolases family 43 ATY48_22345 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY48_22365 PF00196 Bacterial regulatory proteins, luxR family ATY48_22365 PF00072 Response regulator receiver domain ATY48_22370 PF16177 Acetyl-coenzyme A synthetase N-terminus ATY48_22370 PF00501 AMP-binding enzyme ATY48_22370 PF13193 AMP-binding enzyme C-terminal domain ATY48_22385 PF04341 Protein of unknown function, DUF485 ATY48_22390 PF00474 Sodium:solute symporter family ATY48_22400 PF03372 Endonuclease/Exonuclease/phosphatase family ATY48_22410 PF04226 Transglycosylase associated protein ATY48_22415 PF01648 4'-phosphopantetheinyl transferase superfamily ATY48_22420 PF16655 PhoD-like phosphatase, N-terminal domain ATY48_22420 PF09423 PhoD-like phosphatase ATY48_22425 PF16655 PhoD-like phosphatase, N-terminal domain ATY48_22425 PF09423 PhoD-like phosphatase ATY48_22430 PF02527 rRNA small subunit methyltransferase G ATY48_22440 PF00830 Ribosomal L28 family ATY48_22445 PF00471 Ribosomal protein L33 ATY48_22465 PF04303 PrpF protein ATY48_22470 PF03737 Aldolase/RraA ATY48_22475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY48_22475 PF03466 LysR substrate binding domain ATY48_22480 PF13091 PLD-like domain ATY48_22480 PF13396 Phospholipase_D-nuclease N-terminal ATY48_22495 PF13361 UvrD-like helicase C-terminal domain ATY48_22495 PF00580 UvrD/REP helicase N-terminal domain ATY48_22510 PF13520 Amino acid permease ATY48_22515 PF02646 RmuC family ATY48_22525 PF00255 Glutathione peroxidase ATY48_22535 PF05598 Transposase domain (DUF772) ATY48_22550 PF04055 Radical SAM superfamily ATY48_22560 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ATY48_22575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY48_22575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY48_22580 PF13180 PDZ domain ATY48_22580 PF03572 Peptidase family S41 ATY48_22585 PF01551 Peptidase family M23 ATY48_22595 PF04389 Peptidase family M28 ATY48_22610 PF05598 Transposase domain (DUF772) ATY48_22645 PF02463 RecF/RecN/SMC N terminal domain ATY48_22650 PF01227 GTP cyclohydrolase I ATY48_22675 PF00083 Sugar (and other) transporter ATY48_22750 PF02595 Glycerate kinase family ATY48_22755 PF07690 Major Facilitator Superfamily ATY48_22770 PF10672 S-adenosylmethionine-dependent methyltransferase ATY48_22770 PF17785 PUA-like domain ATY48_22775 PF03741 Integral membrane protein TerC family ATY48_22780 PF01694 Rhomboid family ATY48_22785 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY48_22795 PF01569 PAP2 superfamily ATY48_22800 PF01926 50S ribosome-binding GTPase ATY48_22800 PF12631 MnmE helical domain ATY48_22800 PF10396 GTP-binding protein TrmE N-terminus ATY48_22805 PF01522 Polysaccharide deacetylase ATY48_22810 PF02096 60Kd inner membrane protein ATY48_22810 PF14849 YidC periplasmic domain ATY48_22815 PF00825 Ribonuclease P ATY48_22820 PF00468 Ribosomal protein L34