locus-tag	class	description
ATY48_00020	COG0187	DNA topoisomerase II activity
ATY48_00030	COG0501	Belongs to the peptidase M48B family
ATY48_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY48_00090	COG4772	TonB-dependent receptor
ATY48_00100	COG3039	Transposase
ATY48_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY48_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY48_00145	COG3039	Transposase
ATY48_00155	COG1116	anion transmembrane transporter activity
ATY48_00175	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY48_00195	COG3039	Transposase
ATY48_00205	COG0513	Belongs to the DEAD box helicase family
ATY48_00240	COG3039	Transposase
ATY48_00290	COG1858	cytochrome C peroxidase
ATY48_00295	COG0702	epimerase
ATY48_00320	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY48_00335	COG0745	RESPONSE REGULATOR receiver
ATY48_00335	COG3706	GGDEF domain
ATY48_00345	COG2354	Protein conserved in bacteria
ATY48_00350	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY48_00360	COG3293	Transposase
ATY48_00370	COG3264	Mechanosensitive ion channel
ATY48_00370	COG1511	domain protein
ATY48_00450	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY48_00545	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY48_00555	COG0642	Histidine kinase
ATY48_00560	COG1090	epimerase
ATY48_00570	COG3039	Transposase
ATY48_00595	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_00640	COG1136	(ABC) transporter
ATY48_00655	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_00680	COG1272	protein, Hemolysin III
ATY48_00685	COG1111	helicase
ATY48_00685	COG1205	dead DEAH box helicase
ATY48_00740	COG0070	glutamate synthase
ATY48_00740	COG0067	glutamate synthase
ATY48_00740	COG0069	glutamate synthase activity
ATY48_00745	COG0493	'glutamate synthase
ATY48_00765	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_00785	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY48_00790	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY48_00795	COG1609	Transcriptional regulator
ATY48_00820	COG0366	Alpha amylase catalytic
ATY48_00825	COG0366	Alpha amylase catalytic
ATY48_00830	COG2801	Transposase and inactivated derivatives
ATY48_00845	COG3328	transposase activity
ATY48_00875	COG0606	chelatase, subunit chli
ATY48_00910	COG1166	arginine decarboxylase activity
ATY48_00920	COG3501	Rhs element vgr protein
ATY48_00985	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_01010	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY48_01025	COG0210	DNA helicase
ATY48_01040	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY48_01075	COG2937	Belongs to the GPAT DAPAT family
ATY48_01095	COG2963	transposase activity
ATY48_01110	COG2755	lipolytic protein G-D-S-L family
ATY48_01120	COG3186	Phenylalanine-4-hydroxylase
ATY48_01125	COG1522	sequence-specific DNA binding
ATY48_01140	COG4773	Receptor
ATY48_01180	COG1064	alcohol dehydrogenase
ATY48_01185	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY48_01190	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY48_01195	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY48_01200	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_01220	COG3039	Transposase
ATY48_01225	COG0676	glucose-6-phosphate 1-epimerase activity
ATY48_01245	COG3135	benzoate transporter
ATY48_01250	COG3135	benzoate transporter
ATY48_01285	COG2963	transposase activity
ATY48_01305	COG3293	Transposase
ATY48_01325	COG2853	Lipoprotein
ATY48_01340	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY48_01345	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY48_01350	COG1127	ABC transporter
ATY48_01380	COG3293	Transposase
ATY48_01410	COG2801	Transposase and inactivated derivatives
ATY48_01415	COG2963	transposase activity
ATY48_01435	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY48_01440	COG3293	Transposase
ATY48_01450	COG3265	gluconokinase activity
ATY48_01455	COG2211	Major facilitator Superfamily
ATY48_01460	COG3459	Glycosyltransferase 36 associated
ATY48_01475	COG2205	protein histidine kinase activity
ATY48_01485	COG1414	Transcriptional regulator
ATY48_01490	COG0738	Major facilitator superfamily
ATY48_01495	COG3254	rhamnose metabolic process
ATY48_01520	COG0339	signal peptide processing
ATY48_01545	COG0564	pseudouridine synthase activity
ATY48_01600	COG3293	Transposase
ATY48_01605	COG2963	transposase activity
ATY48_01650	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY48_01660	COG0842	Transport permease protein
ATY48_01665	COG1131	(ABC) transporter
ATY48_01670	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY48_01690	COG1476	TRANSCRIPTIONal
ATY48_01700	COG4555	ABC transporter
ATY48_01735	COG0625	glutathione transferase activity
ATY48_01770	COG0583	DNA-binding transcription factor activity
ATY48_01800	COG1199	ATP-dependent helicase activity
ATY48_01820	COG1566	PFAM secretion protein HlyD family protein
ATY48_01845	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY48_01855	COG0745	RESPONSE REGULATOR receiver
ATY48_01860	COG2205	protein histidine kinase activity
ATY48_01885	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY48_01885	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY48_01940	COG3237	CsbD-like
ATY48_01945	COG0180	Tryptophanyl-tRNA synthetase
ATY48_01950	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY48_01995	COG0753	catalase activity
ATY48_02000	COG1595	DNA-templated transcription, initiation
ATY48_02010	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY48_02020	COG0628	permease
ATY48_02035	COG1040	competence protein
ATY48_02055	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_02070	COG0463	Glycosyl transferase, family 2
ATY48_02080	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY48_02085	COG3100	YcgL domain-containing protein
ATY48_02100	COG3387	PFAM Glycoside hydrolase 15-related
ATY48_02105	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY48_02120	COG2239	Acts as a magnesium transporter
ATY48_02130	COG1042	CoA-binding domain protein
ATY48_02130	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY48_02130	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY48_02140	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY48_02145	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY48_02165	COG2963	transposase activity
ATY48_02170	COG2801	Transposase and inactivated derivatives
ATY48_02185	COG3485	protocatechuate 3,4-dioxygenase
ATY48_02190	COG3485	protocatechuate 3,4-dioxygenase
ATY48_02195	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY48_02200	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY48_02205	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY48_02215	COG1414	Transcriptional regulator
ATY48_02225	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_02230	COG4221	oxidoreductase activity
ATY48_02245	COG0018	arginyl-trna synthetase
ATY48_02250	COG2003	Belongs to the UPF0758 family
ATY48_02255	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY48_02280	COG0463	Glycosyl transferase, family 2
ATY48_02295	COG1475	DNA binding
ATY48_02300	COG1192	Involved in chromosome partitioning
ATY48_02315	COG0708	Exodeoxyribonuclease III
ATY48_02320	COG2211	Major facilitator Superfamily
ATY48_02335	COG0739	heme binding
ATY48_02375	COG2963	transposase activity
ATY48_02410	COG3293	Transposase
ATY48_02435	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY48_02455	COG2814	Major facilitator Superfamily
ATY48_02470	COG1289	transmembrane transporter activity
ATY48_02480	COG1136	(ABC) transporter
ATY48_02480	COG0577	efflux transmembrane transporter activity
ATY48_02485	COG0151	Belongs to the GarS family
ATY48_02505	COG2267	carboxylic ester hydrolase activity
ATY48_02515	COG2267	carboxylic ester hydrolase activity
ATY48_02520	COG2453	phosphatase
ATY48_02520	COG0671	phosphoesterase, PA-phosphatase related
ATY48_02530	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY48_02565	COG0439	Biotin carboxylase
ATY48_02575	COG0511	ligase activity, forming carbon-carbon bonds
ATY48_02595	COG1324	tolerance protein
ATY48_02615	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY48_02640	COG0534	Mate efflux family protein
ATY48_02645	COG0616	signal peptide processing
ATY48_02655	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_02675	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY48_02675	COG1754	DNA topoisomerase type I activity
ATY48_02695	COG0758	DNA mediated transformation
ATY48_02700	COG1652	LysM domain
ATY48_02705	COG0242	peptide deformylase activity
ATY48_02715	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY48_02715	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY48_02760	COG1560	Kdo2-lipid A biosynthetic process
ATY48_02770	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY48_02980	COG1294	oxidase, subunit
ATY48_02985	COG1271	oxidase subunit
ATY48_02990	COG2204	response regulator
ATY48_03025	COG2972	Histidine kinase
ATY48_03030	COG3279	Response regulator of the LytR AlgR family
ATY48_03035	COG3279	Response regulator of the LytR AlgR family
ATY48_03045	COG0531	amino acid
ATY48_03060	COG3590	peptidase
ATY48_03075	COG0667	Aldo Keto reductase
ATY48_03090	COG3384	dioxygenase
ATY48_03100	COG1573	uracil-dna glycosylase
ATY48_03105	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY48_03120	COG0025	NhaP-type Na H and K H
ATY48_03125	COG1131	(ABC) transporter
ATY48_03130	COG0842	Transport permease protein
ATY48_03150	COG1404	Belongs to the peptidase S8 family
ATY48_03165	COG0745	RESPONSE REGULATOR receiver
ATY48_03205	COG1522	sequence-specific DNA binding
ATY48_03210	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY48_03235	COG2205	protein histidine kinase activity
ATY48_03235	COG2202	Pas domain
ATY48_03260	COG2813	Specifically methylates the guanine in position
ATY48_03265	COG1187	pseudouridine synthase activity
ATY48_03270	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY48_03305	COG0697	spore germination
ATY48_03315	COG2011	ABC-type metal ion transport system permease component
ATY48_03345	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY48_03355	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY48_03375	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY48_03410	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ATY48_03460	COG3842	ATPase activity
ATY48_03465	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY48_03470	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY48_03485	COG3293	Transposase
ATY48_03525	COG0339	signal peptide processing
ATY48_03560	COG1956	GAF domain-containing protein
ATY48_03575	COG0720	synthase
ATY48_03585	COG0513	Belongs to the DEAD box helicase family
ATY48_03625	COG0626	cystathionine gamma-synthase activity
ATY48_03665	COG3328	transposase activity
ATY48_03690	COG2086	electron transfer activity
ATY48_03715	COG0662	Cupin 2, conserved barrel domain protein
ATY48_03715	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY48_03720	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY48_03755	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY48_03755	COG3218	ABC-type transport auxiliary lipoprotein component
ATY48_03760	COG1127	ABC transporter
ATY48_03765	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY48_03790	COG1183	phosphatidylcholine synthase activity
ATY48_03815	COG3039	Transposase
ATY48_03855	COG2801	Transposase and inactivated derivatives
ATY48_03860	COG2963	transposase activity
ATY48_03870	COG0525	valine-tRNA ligase activity
ATY48_03895	COG0795	lipopolysaccharide-transporting ATPase activity
ATY48_03905	COG4974	Belongs to the 'phage' integrase family
ATY48_03910	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY48_03920	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY48_03920	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY48_03925	COG5295	Hep Hag repeat protein
ATY48_03945	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY48_03955	COG1459	type II secretion system
ATY48_03960	COG2165	general secretion pathway protein
ATY48_03965	COG4970	Tfp pilus assembly protein FimT
ATY48_03970	COG2165	general secretion pathway protein
ATY48_03975	COG4795	General secretion pathway protein
ATY48_03980	COG3156	type II secretion system protein K
ATY48_03985	COG3166	PFAM Fimbrial assembly family protein
ATY48_04000	COG1450	Type ii and iii secretion system protein
ATY48_04010	COG2188	Transcriptional regulator
ATY48_04045	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY48_04050	COG1518	maintenance of DNA repeat elements
ATY48_04090	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY48_04115	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_04130	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY48_04135	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY48_04160	COG3829	transcription factor binding
ATY48_04185	COG3039	Transposase
ATY48_04225	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_04235	COG0678	peroxiredoxin activity
ATY48_04255	COG0330	HflC and HflK could
ATY48_04260	COG0330	HflC and HflK could
ATY48_04275	COG0308	aminopeptidase N
ATY48_04300	COG3039	Transposase
ATY48_04320	COG1560	Kdo2-lipid A biosynthetic process
ATY48_04325	COG1519	Transferase
ATY48_04330	COG1538	Outer membrane efflux protein
ATY48_04335	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY48_04415	COG3710	Transcriptional regulator
ATY48_04435	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY48_04480	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY48_04490	COG3781	membrane
ATY48_04505	COG0625	glutathione transferase activity
ATY48_04515	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY48_04540	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY48_04560	COG2963	transposase activity
ATY48_04565	COG2801	Transposase and inactivated derivatives
ATY48_04610	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_04640	COG2963	transposase activity
ATY48_04670	COG3293	Transposase
ATY48_04690	COG3039	Transposase
ATY48_04710	COG3293	Transposase
ATY48_04715	COG0584	glycerophosphoryl diester phosphodiesterase
ATY48_04745	COG0473	3-isopropylmalate dehydrogenase activity
ATY48_04775	COG2963	transposase activity
ATY48_04800	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY48_04805	COG0740	serine-type endopeptidase activity
ATY48_04840	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY48_04865	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY48_04870	COG0631	protein serine/threonine phosphatase activity
ATY48_04925	COG0582	viral genome integration into host DNA
ATY48_04935	COG0859	PFAM glycosyl transferase family 9
ATY48_04945	COG1234	tRNA 3'-trailer cleavage
ATY48_04950	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY48_04965	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY48_04970	COG0314	molybdopterin synthase activity
ATY48_04995	COG0537	adenosine 5'-monophosphoramidase activity
ATY48_05015	COG0714	Associated with various cellular activities
ATY48_05035	COG0242	peptide deformylase activity
ATY48_05070	COG3039	Transposase
ATY48_05090	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY48_05095	COG0726	polysaccharide deacetylase
ATY48_05140	COG2211	Major facilitator Superfamily
ATY48_05145	COG1609	Transcriptional regulator
ATY48_05150	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_05155	COG2851	Citrate transporter
ATY48_05170	COG0642	Histidine kinase
ATY48_05175	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY48_05180	COG2197	response regulator
ATY48_05205	COG0583	DNA-binding transcription factor activity
ATY48_05220	COG4191	Histidine kinase
ATY48_05235	COG0280	phosphate acetyltransferase
ATY48_05235	COG0281	malic enzyme
ATY48_05245	COG2963	transposase activity
ATY48_05250	COG2801	Transposase and inactivated derivatives
ATY48_05275	COG0352	thiamine-phosphate diphosphorylase activity
ATY48_05280	COG1773	rubredoxin
ATY48_05285	COG2912	Transglutaminase-like superfamily
ATY48_05305	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY48_05325	COG0006	proline dipeptidase activity
ATY48_05340	COG3293	Transposase
ATY48_05360	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY48_05380	COG1561	YicC-like family, N-terminal region
ATY48_05400	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY48_05410	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY48_05420	COG0254	rRNA binding
ATY48_05440	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY48_05490	COG0714	Associated with various cellular activities
ATY48_05510	COG2304	oxidoreductase activity
ATY48_05525	COG1301	dicarboxylic acid transport
ATY48_05530	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY48_05535	COG4773	Receptor
ATY48_05540	COG0739	heme binding
ATY48_05545	COG1376	ErfK ybiS ycfS ynhG family protein
ATY48_05570	COG1022	Amp-dependent synthetase and ligase
ATY48_05580	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_05590	COG0745	RESPONSE REGULATOR receiver
ATY48_05595	COG0642	Histidine kinase
ATY48_05615	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY48_05620	COG4149	molybdate abc transporter
ATY48_05625	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY48_05630	COG3453	Protein conserved in bacteria
ATY48_05630	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY48_05665	COG3293	Transposase
ATY48_05675	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY48_05680	COG3293	Transposase
ATY48_05695	COG2205	protein histidine kinase activity
ATY48_05700	COG0745	RESPONSE REGULATOR receiver
ATY48_05750	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY48_05755	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY48_05790	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY48_05810	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY48_05865	COG2201	protein-glutamate methylesterase activity
ATY48_05900	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY48_05930	COG1842	Phage shock protein A
ATY48_05955	COG0754	glutathionylspermidine amidase activity
ATY48_05980	COG0789	Transcriptional regulator
ATY48_06035	COG0531	amino acid
ATY48_06040	COG2197	response regulator
ATY48_06050	COG1113	amino acid transport
ATY48_06060	COG1271	oxidase subunit
ATY48_06065	COG1294	oxidase, subunit
ATY48_06075	COG2239	Acts as a magnesium transporter
ATY48_06080	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY48_06085	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY48_06105	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY48_06120	COG1137	ATPase activity
ATY48_06125	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY48_06135	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY48_06145	COG0271	Belongs to the BolA IbaG family
ATY48_06170	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY48_06195	COG0628	permease
ATY48_06205	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY48_06210	COG3178	'Phosphotransferase
ATY48_06230	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY48_06235	COG1555	photosystem II stabilization
ATY48_06290	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY48_06300	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY48_06340	COG0534	Mate efflux family protein
ATY48_06370	COG0542	response to heat
ATY48_06385	COG2963	transposase activity
ATY48_06400	COG4206	TonB-dependent receptor
ATY48_06450	COG0019	diaminopimelate decarboxylase activity
ATY48_06465	COG4264	IucA IucC family
ATY48_06475	COG4772	TonB-dependent receptor
ATY48_06485	COG2801	Transposase and inactivated derivatives
ATY48_06490	COG4651	solute:proton antiporter activity
ATY48_06490	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY48_06520	COG0488	(ABC) transporter
ATY48_06540	COG0657	acetylesterase activity
ATY48_06540	COG2755	lipolytic protein G-D-S-L family
ATY48_06565	COG2207	Transcriptional regulator
ATY48_06570	COG0326	Molecular chaperone. Has ATPase activity
ATY48_06590	COG2963	transposase activity
ATY48_06600	COG3328	transposase activity
ATY48_06630	COG2801	Transposase and inactivated derivatives
ATY48_06635	COG2963	transposase activity
ATY48_06640	COG3039	Transposase
ATY48_06655	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY48_06660	COG0719	Fe-S assembly protein
ATY48_06665	COG0396	ATPase activity
ATY48_06670	COG0719	Fe-S assembly protein
ATY48_06675	COG1959	2 iron, 2 sulfur cluster binding
ATY48_06730	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY48_06735	COG3293	Transposase
ATY48_06765	COG0519	Catalyzes the synthesis of GMP from XMP
ATY48_06795	COG1764	response to oxidative stress
ATY48_06805	COG0384	phenazine biosynthesis protein PhzF
ATY48_06810	COG0384	phenazine biosynthesis protein PhzF
ATY48_06820	COG0527	aspartate kinase activity
ATY48_06850	COG0142	geranyltranstransferase activity
ATY48_06855	COG0629	single-stranded DNA binding
ATY48_06860	COG3706	GGDEF domain
ATY48_06860	COG5001	Diguanylate cyclase
ATY48_06860	COG4251	negative regulation of phosphorylation
ATY48_06860	COG2203	Gaf domain
ATY48_06865	COG3321	synthase
ATY48_06865	COG0604	alcohol dehydrogenase
ATY48_06865	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_06895	COG2879	small protein
ATY48_06900	COG1966	Carbon starvation protein
ATY48_06905	COG1741	Belongs to the pirin family
ATY48_06915	COG3501	Rhs element vgr protein
ATY48_06940	COG3501	Rhs element vgr protein
ATY48_06985	COG1741	Belongs to the pirin family
ATY48_06995	COG1515	deoxyribonuclease V activity
ATY48_07010	COG3590	peptidase
ATY48_07025	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY48_07030	COG2199	diguanylate cyclase activity
ATY48_07030	COG2200	EAL domain
ATY48_07030	COG2202	Pas domain
ATY48_07035	COG0835	chemotaxis
ATY48_07040	COG0840	transmembrane signaling receptor activity
ATY48_07045	COG0643	Histidine kinase
ATY48_07045	COG2198	Histidine kinase
ATY48_07055	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY48_07065	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY48_07075	COG2205	protein histidine kinase activity
ATY48_07100	COG3039	Transposase
ATY48_07120	COG3039	Transposase
ATY48_07160	COG0735	belongs to the Fur family
ATY48_07200	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY48_07205	COG0084	hydrolase, TatD family'
ATY48_07220	COG1960	acyl-CoA dehydrogenase activity
ATY48_07245	COG0367	asparagine synthase
ATY48_07255	COG0305	Participates in initiation and elongation during chromosome replication
ATY48_07260	COG0415	Belongs to the DNA photolyase family
ATY48_07380	COG5002	protein histidine kinase activity
ATY48_07380	COG5001	Diguanylate cyclase
ATY48_07385	COG1187	pseudouridine synthase activity
ATY48_07410	COG0475	glutathione-regulated potassium exporter activity
ATY48_07415	COG5002	protein histidine kinase activity
ATY48_07415	COG5000	phosphorelay sensor kinase activity
ATY48_07420	COG0745	RESPONSE REGULATOR receiver
ATY48_07450	COG1132	(ABC) transporter
ATY48_07460	COG3293	Transposase
ATY48_07470	COG3039	Transposase
ATY48_07480	COG3039	Transposase
ATY48_07490	COG3039	Transposase
ATY48_07515	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY48_07525	COG4969	Belongs to the N-Me-Phe pilin family
ATY48_07530	COG2194	sulfuric ester hydrolase activity
ATY48_07550	COG2184	nucleotidyltransferase activity
ATY48_07570	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY48_07580	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY48_07580	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY48_07585	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY48_07590	COG0564	pseudouridine synthase activity
ATY48_07615	COG3387	PFAM Glycoside hydrolase 15-related
ATY48_07620	COG1877	trehalose-phosphatase activity
ATY48_07680	COG1595	DNA-templated transcription, initiation
ATY48_07690	COG1946	Acyl-CoA thioesterase
ATY48_07705	COG0824	Thioesterase
ATY48_07710	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY48_07730	COG0268	Binds directly to 16S ribosomal RNA
ATY48_07735	COG0728	peptidoglycan biosynthetic process
ATY48_07740	COG0196	riboflavin kinase activity
ATY48_07770	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY48_07775	COG1845	cytochrome c oxidase, subunit III
ATY48_07780	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY48_07790	COG3501	Rhs element vgr protein
ATY48_07800	COG3209	COG3209 Rhs family protein
ATY48_07815	COG2963	transposase activity
ATY48_07845	COG2801	Transposase and inactivated derivatives
ATY48_07850	COG2963	transposase activity
ATY48_07870	COG2963	transposase activity
ATY48_07950	COG0824	Thioesterase
ATY48_07960	COG0848	biopolymer transport protein
ATY48_07975	COG2885	chlorophyll binding
ATY48_07985	COG0602	queuosine metabolic process
ATY48_07990	COG1187	pseudouridine synthase activity
ATY48_08035	COG3293	Transposase
ATY48_08065	COG0514	ATP-dependent DNA helicase (RecQ)
ATY48_08070	COG0783	Belongs to the Dps family
ATY48_08075	COG1643	Atp-dependent helicase
ATY48_08085	COG0837	glucose binding
ATY48_08090	COG0837	glucose binding
ATY48_08095	COG0837	glucose binding
ATY48_08105	COG3293	Transposase
ATY48_08140	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY48_08155	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY48_08165	COG1199	ATP-dependent helicase activity
ATY48_08175	COG1397	ADP-ribosylglycohydrolase
ATY48_08185	COG0189	ligase activity
ATY48_08200	COG0835	chemotaxis
ATY48_08205	COG0840	transmembrane signaling receptor activity
ATY48_08240	COG2304	oxidoreductase activity
ATY48_08255	COG1446	asparaginase
ATY48_08260	COG3142	Participates in the control of copper homeostasis
ATY48_08310	COG3537	Alpha-1,2-mannosidase
ATY48_08370	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY48_08380	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY48_08385	COG1388	LysM domain
ATY48_08385	COG3858	chitin binding
ATY48_08400	COG0837	glucose binding
ATY48_08405	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY48_08415	COG0494	nUDIX hydrolase
ATY48_08425	COG3956	TIGRFAM MazG family protein
ATY48_08435	COG0330	HflC and HflK could
ATY48_08475	COG1960	acyl-CoA dehydrogenase activity
ATY48_08485	COG1309	transcriptional regulator
ATY48_08490	COG4771	TonB-dependent receptor
ATY48_08500	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY48_08510	COG0463	Glycosyl transferase, family 2
ATY48_08515	COG0517	IMP dehydrogenase activity
ATY48_08515	COG0516	GMP reductase activity
ATY48_08525	COG1272	protein, Hemolysin III
ATY48_08535	COG0739	heme binding
ATY48_08540	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY48_08545	COG0626	cystathionine gamma-synthase activity
ATY48_08555	COG1760	l-serine dehydratase
ATY48_08565	COG2353	YceI-like domain
ATY48_08575	COG2353	YceI-like domain
ATY48_08625	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY48_08650	COG1960	acyl-CoA dehydrogenase activity
ATY48_08655	COG1024	Enoyl-CoA hydratase
ATY48_08675	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY48_08675	COG1024	Enoyl-CoA hydratase
ATY48_08690	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY48_08750	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY48_08755	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY48_08760	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY48_08775	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY48_08780	COG1278	Cold shock
ATY48_08805	COG1201	RNA secondary structure unwinding
ATY48_08810	COG1793	dna ligase
ATY48_08820	COG1793	dna ligase
ATY48_08820	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY48_08835	COG0745	RESPONSE REGULATOR receiver
ATY48_08835	COG3706	GGDEF domain
ATY48_08850	COG0183	Belongs to the thiolase family
ATY48_08865	COG1451	nucleotide metabolic process
ATY48_08875	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY48_08910	COG1047	Peptidyl-prolyl cis-trans
ATY48_08925	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY48_08935	COG1902	pentaerythritol trinitrate reductase activity
ATY48_08940	COG2814	Major facilitator Superfamily
ATY48_08990	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY48_08990	COG0392	lysyltransferase activity
ATY48_09000	COG0251	oxidation-reduction process
ATY48_09005	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY48_09020	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY48_09045	COG1595	DNA-templated transcription, initiation
ATY48_09065	COG2878	Part of a membrane complex involved in electron transport
ATY48_09095	COG0833	amino acid
ATY48_09100	COG2040	homocysteine
ATY48_09110	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY48_09200	COG1131	(ABC) transporter
ATY48_09205	COG4771	TonB-dependent receptor
ATY48_09255	COG0750	zinc metalloprotease
ATY48_09265	COG0575	Belongs to the CDS family
ATY48_09330	COG0024	Methionine aminopeptidase
ATY48_09350	COG1393	Belongs to the ArsC family
ATY48_09365	COG0367	asparagine synthase
ATY48_09380	COG4774	siderophore transport
ATY48_09415	COG1566	PFAM secretion protein HlyD family protein
ATY48_09420	COG2814	Major facilitator Superfamily
ATY48_09455	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_09485	COG1960	acyl-CoA dehydrogenase activity
ATY48_09515	COG2914	Belongs to the UPF0125 (RnfH) family
ATY48_09520	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY48_09530	COG0497	DNA recombination
ATY48_09555	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY48_09560	COG0287	Prephenate dehydrogenase
ATY48_09560	COG1605	Chorismate mutase
ATY48_09575	COG0583	DNA-binding transcription factor activity
ATY48_09580	COG1132	(ABC) transporter
ATY48_09615	COG2850	peptidyl-arginine hydroxylation
ATY48_09650	COG3293	Transposase
ATY48_09660	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_09700	COG1131	(ABC) transporter
ATY48_09705	COG1725	Transcriptional regulator
ATY48_09715	COG0386	Belongs to the glutathione peroxidase family
ATY48_09755	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY48_09765	COG0646	methionine synthase
ATY48_09765	COG1410	methionine synthase
ATY48_09770	COG1410	methionine synthase
ATY48_09770	COG0646	methionine synthase
ATY48_09780	COG1960	acyl-CoA dehydrogenase activity
ATY48_09800	COG0557	exoribonuclease II activity
ATY48_09820	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY48_09830	COG3039	Transposase
ATY48_09845	COG3328	transposase activity
ATY48_09855	COG1278	Cold shock
ATY48_09870	COG3039	Transposase
ATY48_09880	COG3039	Transposase
ATY48_09900	COG3039	Transposase
ATY48_09935	COG3039	Transposase
ATY48_09955	COG2801	Transposase and inactivated derivatives
ATY48_09960	COG2963	transposase activity
ATY48_09990	COG3039	Transposase
ATY48_10000	COG0583	DNA-binding transcription factor activity
ATY48_10050	COG2201	protein-glutamate methylesterase activity
ATY48_10085	COG0531	amino acid
ATY48_10090	COG0531	amino acid
ATY48_10100	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY48_10105	COG0277	FAD linked oxidase domain protein
ATY48_10180	COG0436	Aminotransferase
ATY48_10205	COG1187	pseudouridine synthase activity
ATY48_10210	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY48_10215	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY48_10220	COG2350	Protein conserved in bacteria
ATY48_10250	COG1175	transmembrane transport
ATY48_10255	COG0395	ABC-type sugar transport system, permease component
ATY48_10280	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY48_10285	COG2957	Belongs to the agmatine deiminase family
ATY48_10295	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY48_10305	COG0539	negative regulation of cytoplasmic translation
ATY48_10320	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY48_10325	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY48_10335	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY48_10340	COG0475	glutathione-regulated potassium exporter activity
ATY48_10340	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY48_10395	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY48_10400	COG0583	DNA-binding transcription factor activity
ATY48_10420	COG0583	DNA-binding transcription factor activity
ATY48_10425	COG0583	DNA-binding transcription factor activity
ATY48_10440	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY48_10445	COG1321	iron dependent repressor
ATY48_10450	COG0590	tRNA wobble adenosine to inosine editing
ATY48_10460	COG0668	transmembrane transport
ATY48_10500	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_10505	COG1183	phosphatidylcholine synthase activity
ATY48_10515	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY48_10530	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY48_10530	COG0723	plastoquinol--plastocyanin reductase activity
ATY48_10540	COG2183	response to ionizing radiation
ATY48_10550	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY48_10565	COG0671	phosphoesterase, PA-phosphatase related
ATY48_10585	COG1794	racemase activity, acting on amino acids and derivatives
ATY48_10590	COG0697	spore germination
ATY48_10595	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ATY48_10615	COG1012	belongs to the aldehyde dehydrogenase family
ATY48_10650	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY48_10665	COG0124	histidyl-tRNA synthetase
ATY48_10715	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY48_10715	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY48_10860	COG3293	Transposase
ATY48_10880	COG3293	Transposase
ATY48_10910	COG3293	Transposase
ATY48_10930	COG2201	protein-glutamate methylesterase activity
ATY48_10960	COG3039	Transposase
ATY48_10980	COG3328	transposase activity
ATY48_11025	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY48_11050	COG0811	peptide transport
ATY48_11075	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY48_11090	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY48_11105	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY48_11115	COG0354	folic acid binding
ATY48_11125	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY48_11135	COG0363	glucosamine-6-phosphate deaminase activity
ATY48_11140	COG0129	dihydroxy-acid dehydratase activity
ATY48_11145	COG0800	Aldolase
ATY48_11180	COG0784	Response regulator, receiver
ATY48_11180	COG5002	protein histidine kinase activity
ATY48_11180	COG2205	protein histidine kinase activity
ATY48_11190	COG3293	Transposase
ATY48_11210	COG3706	GGDEF domain
ATY48_11265	COG0386	Belongs to the glutathione peroxidase family
ATY48_11350	COG4251	negative regulation of phosphorylation
ATY48_11350	COG3706	GGDEF domain
ATY48_11350	COG2203	Gaf domain
ATY48_11350	COG5001	Diguanylate cyclase
ATY48_11360	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY48_11390	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ATY48_11405	COG0617	tRNA 3'-terminal CCA addition
ATY48_11420	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY48_11470	COG4566	intracellular signal transduction
ATY48_11480	COG2963	transposase activity
ATY48_11495	COG1605	Chorismate mutase
ATY48_11495	COG0077	Prephenate dehydratase
ATY48_11505	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY48_11555	COG2986	histidine ammonia-lyase
ATY48_11565	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY48_11585	COG2963	transposase activity
ATY48_11605	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY48_11620	COG3115	cell septum assembly
ATY48_11645	COG0316	Belongs to the HesB IscA family
ATY48_11680	COG0288	reversible hydration of carbon dioxide
ATY48_11705	COG2925	Exonuclease
ATY48_11715	COG0667	Aldo Keto reductase
ATY48_11745	COG0488	(ABC) transporter
ATY48_11750	COG4133	protoheme IX ABC transporter activity
ATY48_11755	COG0488	(ABC) transporter
ATY48_11790	COG0494	nUDIX hydrolase
ATY48_11800	COG1024	Enoyl-CoA hydratase
ATY48_11810	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY48_11825	COG3039	Transposase
ATY48_11840	COG3293	Transposase
ATY48_11860	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY48_11865	COG0573	inorganic phosphate transmembrane transporter activity
ATY48_11880	COG0704	Plays a role in the regulation of phosphate uptake
ATY48_11890	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY48_11905	COG3328	transposase activity
ATY48_11935	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY48_11945	COG1862	Preprotein translocase
ATY48_12025	COG3293	Transposase
ATY48_12040	COG0405	Gamma-glutamyltransferase
ATY48_12045	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY48_12065	COG0742	ribosomal rna small subunit methyltransferase
ATY48_12090	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY48_12125	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_12130	COG3039	Transposase
ATY48_12160	COG0303	'Molybdopterin
ATY48_12170	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY48_12180	COG1426	Protein conserved in bacteria
ATY48_12195	COG0105	UTP biosynthetic process
ATY48_12205	COG1024	Enoyl-CoA hydratase
ATY48_12205	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY48_12210	COG0183	Belongs to the thiolase family
ATY48_12215	COG0038	chloride channel
ATY48_12235	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY48_12255	COG1674	ftsk spoiiie
ATY48_12260	COG0492	ferredoxin-NADP+ reductase activity
ATY48_12285	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY48_12290	COG0542	response to heat
ATY48_12295	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY48_12305	COG0482	sulfurtransferase activity
ATY48_12330	COG5001	Diguanylate cyclase
ATY48_12335	COG4585	Histidine kinase
ATY48_12345	COG5002	protein histidine kinase activity
ATY48_12365	COG0784	Response regulator, receiver
ATY48_12365	COG0835	chemotaxis
ATY48_12375	COG1558	bacterial-type flagellum-dependent cell motility
ATY48_12380	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY48_12385	COG1749	Flagellar hook protein flgE
ATY48_12390	COG4787	bacterial-type flagellum-dependent cell motility
ATY48_12395	COG4786	Flagellar basal body rod
ATY48_12425	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY48_12430	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY48_12460	COG2201	protein-glutamate methylesterase activity
ATY48_12465	COG2204	response regulator
ATY48_12480	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY48_12490	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_12520	COG1677	Flagellar hook-basal body complex protein FliE
ATY48_12570	COG3190	flagellar
ATY48_12580	COG1987	bacterial-type flagellum assembly
ATY48_12585	COG1684	flagellar biosynthetic protein fliR
ATY48_12590	COG3300	MHYT domain
ATY48_12590	COG5001	Diguanylate cyclase
ATY48_12595	COG3300	MHYT domain
ATY48_12595	COG5001	Diguanylate cyclase
ATY48_12610	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY48_12620	COG0455	bacterial-type flagellum organization
ATY48_12640	COG2198	Histidine kinase
ATY48_12640	COG0643	Histidine kinase
ATY48_12655	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_12675	COG3039	Transposase
ATY48_12680	COG3209	COG3209 Rhs family protein
ATY48_12685	COG3293	Transposase
ATY48_12705	COG3039	Transposase
ATY48_12715	COG3039	Transposase
ATY48_12815	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY48_12820	COG4988	ABC transporter
ATY48_12835	COG3039	Transposase
ATY48_12840	COG1271	oxidase subunit
ATY48_12845	COG1294	oxidase, subunit
ATY48_12905	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY48_12910	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY48_12920	COG0137	argininosuccinate synthase activity
ATY48_12925	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY48_12940	COG2166	iron-sulfur cluster assembly
ATY48_12955	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY48_12970	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY48_12980	COG4302	ethanolamine ammonia-lyase activity
ATY48_12985	COG3293	Transposase
ATY48_13010	COG3039	Transposase
ATY48_13020	COG4677	pectinesterase activity
ATY48_13060	COG0402	S-adenosylhomocysteine deaminase activity
ATY48_13075	COG1509	lysine 2,3-aminomutase activity
ATY48_13080	COG5001	Diguanylate cyclase
ATY48_13080	COG3300	MHYT domain
ATY48_13095	COG0483	inositol monophosphate 1-phosphatase activity
ATY48_13125	COG0513	Belongs to the DEAD box helicase family
ATY48_13145	COG0625	glutathione transferase activity
ATY48_13160	COG4681	YaeQ
ATY48_13165	COG2081	HI0933 family
ATY48_13185	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_13210	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY48_13215	COG0802	atpase or kinase
ATY48_13220	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY48_13220	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY48_13225	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY48_13235	COG3293	Transposase
ATY48_13255	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY48_13305	COG3328	transposase activity
ATY48_13335	COG2969	positive regulation of protein catabolic process
ATY48_13340	COG0625	glutathione transferase activity
ATY48_13345	COG2857	Cytochrome c1
ATY48_13350	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY48_13355	COG0723	plastoquinol--plastocyanin reductase activity
ATY48_13360	COG0741	lytic transglycosylase activity
ATY48_13385	COG1702	phosphate starvation-inducible protein PhoH
ATY48_13405	COG4535	Mg2 and Co2 transporter CorC
ATY48_13420	COG1012	belongs to the aldehyde dehydrogenase family
ATY48_13430	COG1177	transmembrane transport
ATY48_13475	COG0174	glutamine synthetase
ATY48_13480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY48_13485	COG0745	RESPONSE REGULATOR receiver
ATY48_13485	COG3706	GGDEF domain
ATY48_13490	COG0477	Major facilitator Superfamily
ATY48_13500	COG0243	molybdopterin cofactor binding
ATY48_13525	COG1121	(ABC) transporter
ATY48_13535	COG2733	membrane
ATY48_13540	COG0784	Response regulator, receiver
ATY48_13540	COG2205	protein histidine kinase activity
ATY48_13540	COG5002	protein histidine kinase activity
ATY48_13550	COG3039	Transposase
ATY48_13555	COG2902	Dehydrogenase
ATY48_13565	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY48_13570	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY48_13590	COG1609	Transcriptional regulator
ATY48_13595	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY48_13595	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY48_13600	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY48_13605	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY48_13605	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY48_13620	COG3039	Transposase
ATY48_13655	COG3293	Transposase
ATY48_13685	COG3501	Rhs element vgr protein
ATY48_13705	COG3501	Rhs element vgr protein
ATY48_13725	COG3501	Rhs element vgr protein
ATY48_13770	COG3039	Transposase
ATY48_13800	COG4771	TonB-dependent receptor
ATY48_13810	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY48_13830	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY48_13835	COG1360	Flagellar Motor Protein
ATY48_13840	COG1192	Involved in chromosome partitioning
ATY48_13845	COG0835	chemotaxis
ATY48_13855	COG0745	RESPONSE REGULATOR receiver
ATY48_13885	COG0840	transmembrane signaling receptor activity
ATY48_13895	COG0840	transmembrane signaling receptor activity
ATY48_13900	COG0840	transmembrane signaling receptor activity
ATY48_13905	COG0840	transmembrane signaling receptor activity
ATY48_13910	COG0840	transmembrane signaling receptor activity
ATY48_13915	COG0840	transmembrane signaling receptor activity
ATY48_13925	COG0835	chemotaxis
ATY48_13945	COG0840	transmembrane signaling receptor activity
ATY48_13970	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY48_14000	COG0318	PFAM AMP-dependent synthetase and ligase
ATY48_14005	COG1024	Enoyl-CoA hydratase
ATY48_14010	COG0784	Response regulator, receiver
ATY48_14010	COG2205	protein histidine kinase activity
ATY48_14010	COG2198	Histidine kinase
ATY48_14030	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY48_14060	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY48_14070	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY48_14075	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY48_14085	COG0505	Belongs to the CarA family
ATY48_14090	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY48_14100	COG3293	Transposase
ATY48_14110	COG2258	MOSC domain
ATY48_14115	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY48_14180	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_14190	COG0477	Major facilitator Superfamily
ATY48_14200	COG1070	Carbohydrate kinase
ATY48_14215	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY48_14230	COG0800	Aldolase
ATY48_14245	COG3734	2-keto-3-deoxy-galactonokinase
ATY48_14250	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY48_14260	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY48_14275	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY48_14280	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY48_14290	COG0351	phosphomethylpyrimidine kinase
ATY48_14320	COG0583	DNA-binding transcription factor activity
ATY48_14325	COG1741	Belongs to the pirin family
ATY48_14345	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY48_14350	COG0305	Participates in initiation and elongation during chromosome replication
ATY48_14370	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY48_14380	COG2137	regulation of response to DNA damage stimulus
ATY48_14400	COG1546	Belongs to the CinA family
ATY48_14405	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY48_14410	COG1923	regulation of RNA biosynthetic process
ATY48_14420	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY48_14425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY48_14435	COG1534	Rna-binding protein
ATY48_14450	COG1238	metal cluster binding
ATY48_14465	COG2840	Smr protein MutS2
ATY48_14480	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ATY48_14540	COG0306	phosphate transporter
ATY48_14550	COG1253	flavin adenine dinucleotide binding
ATY48_14565	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY48_14570	COG0477	Major facilitator Superfamily
ATY48_14575	COG1132	(ABC) transporter
ATY48_14580	COG1136	(ABC) transporter
ATY48_14600	COG0438	transferase activity, transferring glycosyl groups
ATY48_14610	COG2264	protein methyltransferase activity
ATY48_14640	COG2244	polysaccharide biosynthetic process
ATY48_14690	COG1595	DNA-templated transcription, initiation
ATY48_14705	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY48_14725	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY48_14785	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY48_14790	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY48_14820	COG2963	transposase activity
ATY48_14835	COG4644	lycopene metabolic process
ATY48_14845	COG1858	cytochrome C peroxidase
ATY48_14885	COG0515	serine threonine protein kinase
ATY48_14890	COG0631	protein serine/threonine phosphatase activity
ATY48_14925	COG3501	Rhs element vgr protein
ATY48_14935	COG3039	Transposase
ATY48_14990	COG3039	Transposase
ATY48_15010	COG3039	Transposase
ATY48_15030	COG2801	Transposase and inactivated derivatives
ATY48_15040	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ATY48_15040	COG0316	Belongs to the HesB IscA family
ATY48_15045	COG2154	pterin-4-alpha-carbinolamine dehydratase
ATY48_15055	COG0428	transporter
ATY48_15060	COG0428	transporter
ATY48_15065	COG3064	Membrane
ATY48_15075	COG1530	ribonuclease E activity
ATY48_15085	COG3293	Transposase
ATY48_15100	COG3039	Transposase
ATY48_15120	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY48_15160	COG3039	Transposase
ATY48_15200	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY48_15200	COG1648	precorrin-2 dehydrogenase activity
ATY48_15230	COG3039	Transposase
ATY48_15270	COG1648	precorrin-2 dehydrogenase activity
ATY48_15270	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY48_15295	COG0746	molybdenum cofactor guanylyltransferase activity
ATY48_15360	COG4206	TonB-dependent receptor
ATY48_15390	COG4206	TonB-dependent receptor
ATY48_15435	COG0531	amino acid
ATY48_15450	COG0006	proline dipeptidase activity
ATY48_15460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY48_15475	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY48_15480	COG3938	Belongs to the proline racemase family
ATY48_15490	COG0552	protein localization to endoplasmic reticulum
ATY48_15510	COG0784	Response regulator, receiver
ATY48_15510	COG4191	Histidine kinase
ATY48_15530	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY48_15640	COG0438	transferase activity, transferring glycosyl groups
ATY48_15645	COG0438	transferase activity, transferring glycosyl groups
ATY48_15690	COG0776	regulation of translation
ATY48_15705	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY48_15710	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY48_15715	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY48_15730	COG2963	transposase activity
ATY48_15750	COG0556	nucleotide-excision repair
ATY48_15755	COG4969	Belongs to the N-Me-Phe pilin family
ATY48_15795	COG1611	Belongs to the LOG family
ATY48_15805	COG2095	MarC family integral membrane protein
ATY48_15815	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY48_15820	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY48_15855	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY48_15875	COG0195	Participates in both transcription termination and antitermination
ATY48_15890	COG1007	ATP synthesis coupled electron transport
ATY48_15905	COG0713	ATP synthesis coupled electron transport
ATY48_15920	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY48_15925	COG1034	ATP synthesis coupled electron transport
ATY48_15930	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY48_15935	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY48_15955	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY48_15975	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_15990	COG3293	Transposase
ATY48_16070	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY48_16075	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY48_16085	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY48_16105	COG0433	COG0433 Predicted ATPase
ATY48_16110	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_16125	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY48_16135	COG0412	Dienelactone hydrolase
ATY48_16155	COG0489	protein tyrosine kinase activity
ATY48_16190	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY48_16195	COG2311	Membrane
ATY48_16200	COG1047	Peptidyl-prolyl cis-trans
ATY48_16205	COG0791	NLP P60 protein
ATY48_16210	COG0791	NLP P60 protein
ATY48_16225	COG1301	dicarboxylic acid transport
ATY48_16230	COG1785	Belongs to the alkaline phosphatase family
ATY48_16235	COG0037	tRNA processing
ATY48_16245	COG0142	geranyltranstransferase activity
ATY48_16265	COG0312	modulator of DNA gyrase
ATY48_16270	COG3028	Belongs to the UPF0307 family
ATY48_16275	COG0312	modulator of DNA gyrase
ATY48_16285	COG3164	Protein of unknown function
ATY48_16290	COG1530	ribonuclease E activity
ATY48_16300	COG2968	Membrane
ATY48_16340	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY48_16365	COG3118	belongs to the thioredoxin family
ATY48_16375	COG3039	Transposase
ATY48_16385	COG3293	Transposase
ATY48_16435	COG3293	Transposase
ATY48_16455	COG3039	Transposase
ATY48_16480	COG3293	Transposase
ATY48_16485	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_16555	COG0471	metal ion transport
ATY48_16555	COG3273	potassium ion transport
ATY48_16585	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_16595	COG1970	mechanosensitive ion channel activity
ATY48_16605	COG3293	Transposase
ATY48_16615	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY48_16620	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY48_16650	COG0308	aminopeptidase N
ATY48_16655	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY48_16665	COG2895	sulfate adenylyltransferase (ATP) activity
ATY48_16665	COG0529	Catalyzes the synthesis of activated sulfate
ATY48_16675	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY48_16705	COG2205	protein histidine kinase activity
ATY48_16705	COG0784	Response regulator, receiver
ATY48_16705	COG2198	Histidine kinase
ATY48_16740	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY48_16745	COG3588	fructose-bisphosphate aldolase
ATY48_16750	COG0469	pyruvate kinase activity
ATY48_16790	COG0753	catalase activity
ATY48_16805	COG3039	Transposase
ATY48_16825	COG2207	Transcriptional regulator
ATY48_16825	COG1917	Cupin 2, conserved barrel domain protein
ATY48_16860	COG0823	Involved in the tonB-independent uptake of proteins
ATY48_16860	COG1506	peptidase
ATY48_16880	COG3039	Transposase
ATY48_16885	COG1297	OPT oligopeptide transporter protein
ATY48_16945	COG0406	alpha-ribazole phosphatase activity
ATY48_16945	COG0328	RNA-DNA hybrid ribonuclease activity
ATY48_16985	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY48_17000	COG0732	type I restriction modification DNA specificity domain
ATY48_17005	COG3039	Transposase
ATY48_17015	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY48_17020	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY48_17040	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY48_17120	COG3501	Rhs element vgr protein
ATY48_17185	COG3501	Rhs element vgr protein
ATY48_17240	COG3501	Rhs element vgr protein
ATY48_17270	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY48_17280	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY48_17290	COG3501	Rhs element vgr protein
ATY48_17340	COG2963	transposase activity
ATY48_17375	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY48_17390	COG2197	response regulator
ATY48_17395	COG4585	Histidine kinase
ATY48_17410	COG2894	cell division
ATY48_17415	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY48_17425	COG0642	Histidine kinase
ATY48_17430	COG0745	RESPONSE REGULATOR receiver
ATY48_17435	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY48_17445	COG2194	sulfuric ester hydrolase activity
ATY48_17475	COG3551	Protein conserved in bacteria
ATY48_17520	COG2963	transposase activity
ATY48_17530	COG3293	Transposase
ATY48_17545	COG0203	ribosomal protein L17
ATY48_17550	COG0202	RNA polymerase activity
ATY48_17565	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY48_17570	COG0201	protein transport
ATY48_17580	COG1841	ribosomal large subunit assembly
ATY48_17585	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY48_17605	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY48_17625	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY48_17630	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY48_17635	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY48_17660	COG0089	rRNA binding
ATY48_17700	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY48_17735	COG0250	Participates in transcription elongation, termination and antitermination
ATY48_17740	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY48_17770	COG0012	GTP binding
ATY48_17785	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY48_17825	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY48_17845	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY48_17875	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY48_17885	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY48_17915	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY48_17920	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY48_17940	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY48_17955	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY48_17955	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY48_18000	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY48_18010	COG3634	alkyl hydroperoxide reductase activity
ATY48_18015	COG0583	DNA-binding transcription factor activity
ATY48_18020	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY48_18085	COG4783	chaperone-mediated protein folding
ATY48_18100	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY48_18110	COG0438	transferase activity, transferring glycosyl groups
ATY48_18115	COG0671	phosphoesterase, PA-phosphatase related
ATY48_18130	COG2833	Protein of unknown function (DUF455)
ATY48_18150	COG0285	dihydrofolate synthase activity
ATY48_18155	COG0406	alpha-ribazole phosphatase activity
ATY48_18185	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY48_18190	COG4208	sulfate ABC transporter
ATY48_18195	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY48_18200	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY48_18205	COG0156	8-amino-7-oxononanoate synthase activity
ATY48_18235	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY48_18235	COG1902	pentaerythritol trinitrate reductase activity
ATY48_18245	COG2963	transposase activity
ATY48_18280	COG0745	RESPONSE REGULATOR receiver
ATY48_18280	COG3706	GGDEF domain
ATY48_18310	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_18320	COG3293	Transposase
ATY48_18370	COG3386	PFAM SMP-30 Gluconolaconase
ATY48_18390	COG1024	Enoyl-CoA hydratase
ATY48_18400	COG0318	PFAM AMP-dependent synthetase and ligase
ATY48_18405	COG0583	DNA-binding transcription factor activity
ATY48_18445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY48_18450	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY48_18460	COG2096	Adenosyltransferase
ATY48_18465	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY48_18480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY48_18535	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY48_18545	COG0642	Histidine kinase
ATY48_18560	COG4181	ATPase activity
ATY48_18570	COG2175	clavaminate synthase activity
ATY48_18580	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY48_18605	COG0667	Aldo Keto reductase
ATY48_18615	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY48_18620	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY48_18635	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY48_18640	COG4106	trans-aconitate 2-methyltransferase activity
ATY48_18650	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY48_18660	COG3293	Transposase
ATY48_18705	COG2226	methyltransferase
ATY48_18755	COG0604	alcohol dehydrogenase
ATY48_18755	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_18755	COG3321	synthase
ATY48_18765	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY48_18780	COG0494	nUDIX hydrolase
ATY48_18795	COG4942	peptidase
ATY48_18795	COG1388	LysM domain
ATY48_18820	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY48_18825	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY48_18850	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY48_18865	COG3116	cell division
ATY48_18905	COG1988	membrane-bound metal-dependent
ATY48_18910	COG0277	FAD linked oxidase domain protein
ATY48_18915	COG0745	RESPONSE REGULATOR receiver
ATY48_18920	COG2205	protein histidine kinase activity
ATY48_18930	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY48_18935	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY48_18960	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY48_18990	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY48_18990	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY48_19030	COG0488	(ABC) transporter
ATY48_19075	COG0745	RESPONSE REGULATOR receiver
ATY48_19080	COG2205	protein histidine kinase activity
ATY48_19155	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY48_19165	COG2963	transposase activity
ATY48_19170	COG3039	Transposase
ATY48_19175	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY48_19180	COG3293	Transposase
ATY48_19190	COG3039	Transposase
ATY48_19195	COG3039	Transposase
ATY48_19235	COG3039	Transposase
ATY48_19240	COG3293	Transposase
ATY48_19270	COG0726	polysaccharide deacetylase
ATY48_19270	COG1649	PFAM Uncharacterised BCR, COG1649
ATY48_19275	COG1215	transferase activity, transferring glycosyl groups
ATY48_19285	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY48_19290	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY48_19295	COG1609	Transcriptional regulator
ATY48_19320	COG3250	beta-galactosidase activity
ATY48_19355	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY48_19360	COG4191	Histidine kinase
ATY48_19365	COG0784	Response regulator, receiver
ATY48_19370	COG4251	negative regulation of phosphorylation
ATY48_19375	COG2823	Periplasmic or secreted lipoprotein
ATY48_19380	COG0673	inositol 2-dehydrogenase activity
ATY48_19385	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY48_19425	COG1056	cytidyltransferase-related domain
ATY48_19425	COG1051	belongs to the nudix hydrolase family
ATY48_19480	COG1686	Belongs to the peptidase S11 family
ATY48_19490	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY48_19495	COG2951	lytic endotransglycosylase activity
ATY48_19530	COG0772	Belongs to the SEDS family
ATY48_19545	COG1792	Involved in formation and maintenance of cell shape
ATY48_19550	COG1077	Cell shape determining protein MreB Mrl
ATY48_19605	COG2199	diguanylate cyclase activity
ATY48_19610	COG0308	aminopeptidase N
ATY48_19635	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY48_19675	COG1505	serine-type exopeptidase activity
ATY48_19710	COG3275	phosphorelay sensor kinase activity
ATY48_19725	COG3293	Transposase
ATY48_19740	COG3706	GGDEF domain
ATY48_19750	COG0659	secondary active sulfate transmembrane transporter activity
ATY48_19755	COG5297	Belongs to the glycosyl hydrolase family 6
ATY48_19755	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY48_19765	COG0840	transmembrane signaling receptor activity
ATY48_19795	COG3293	Transposase
ATY48_19830	COG0598	Magnesium transport protein CorA
ATY48_19840	COG1113	amino acid transport
ATY48_19845	COG5297	Belongs to the glycosyl hydrolase family 6
ATY48_19850	COG4305	rare lipoprotein A
ATY48_19855	COG0697	spore germination
ATY48_19915	COG4221	oxidoreductase activity
ATY48_19930	COG2963	transposase activity
ATY48_19950	COG0456	acetyltransferase
ATY48_19960	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY48_19990	COG3227	Zinc metalloprotease (Elastase)
ATY48_20005	COG2111	Na H antiporter
ATY48_20005	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY48_20010	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY48_20015	COG0651	ATP synthesis coupled electron transport
ATY48_20025	COG2212	antiporter activity
ATY48_20030	COG1320	monovalent cation:proton antiporter activity
ATY48_20035	COG3039	Transposase
ATY48_20060	COG3104	oligopeptide transport
ATY48_20105	COG3293	Transposase
ATY48_20115	COG0183	Belongs to the thiolase family
ATY48_20165	COG3039	Transposase
ATY48_20195	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY48_20200	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY48_20210	COG4948	Mandelate Racemase Muconate Lactonizing
ATY48_20240	COG3293	Transposase
ATY48_20250	COG0531	amino acid
ATY48_20265	COG3293	Transposase
ATY48_20280	COG4682	membrane
ATY48_20285	COG2133	pyrroloquinoline quinone binding
ATY48_20315	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_20325	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY48_20335	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY48_20340	COG1610	YqeY-like protein
ATY48_20345	COG1295	ribonuclease BN
ATY48_20350	COG0358	DNA primase activity
ATY48_20410	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY48_20420	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY48_20435	COG2963	transposase activity
ATY48_20540	COG2963	transposase activity
ATY48_20545	COG2801	Transposase and inactivated derivatives
ATY48_20605	COG3039	Transposase
ATY48_20615	COG3328	transposase activity
ATY48_20630	COG1473	amidohydrolase
ATY48_20635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY48_20640	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY48_20650	COG5383	Protein conserved in bacteria
ATY48_20680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY48_20700	COG0028	Belongs to the TPP enzyme family
ATY48_20705	COG4191	Histidine kinase
ATY48_20730	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY48_20745	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY48_20750	COG3177	Filamentation induced by cAMP protein fic
ATY48_20765	COG0596	Alpha beta hydrolase
ATY48_20775	COG0318	PFAM AMP-dependent synthetase and ligase
ATY48_20780	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY48_20830	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY48_20865	COG3039	Transposase
ATY48_20890	COG2801	Transposase and inactivated derivatives
ATY48_20895	COG2963	transposase activity
ATY48_20980	COG2353	YceI-like domain
ATY48_21020	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY48_21035	COG3386	PFAM SMP-30 Gluconolaconase
ATY48_21080	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY48_21090	COG4771	TonB-dependent receptor
ATY48_21105	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY48_21135	COG1252	NADH dehydrogenase
ATY48_21145	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY48_21155	COG2201	protein-glutamate methylesterase activity
ATY48_21160	COG2177	Part of the ABC transporter FtsEX involved in
ATY48_21165	COG2884	Cell division ATP-binding protein ftsE
ATY48_21175	COG3118	belongs to the thioredoxin family
ATY48_21180	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY48_21200	COG0729	surface antigen
ATY48_21205	COG2911	Protein conserved in bacteria
ATY48_21235	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY48_21305	COG1733	regulation of RNA biosynthetic process
ATY48_21310	COG0702	epimerase
ATY48_21340	COG0583	DNA-binding transcription factor activity
ATY48_21345	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY48_21355	COG2205	protein histidine kinase activity
ATY48_21360	COG2205	protein histidine kinase activity
ATY48_21365	COG0745	RESPONSE REGULATOR receiver
ATY48_21385	COG1902	pentaerythritol trinitrate reductase activity
ATY48_21390	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY48_21400	COG2814	Major facilitator Superfamily
ATY48_21405	COG0583	DNA-binding transcription factor activity
ATY48_21415	COG0084	hydrolase, TatD family'
ATY48_21445	COG3293	Transposase
ATY48_21465	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY48_21515	COG3039	Transposase
ATY48_21520	COG2826	transposase and inactivated derivatives, IS30 family
ATY48_21535	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY48_21540	COG1960	acyl-CoA dehydrogenase activity
ATY48_21600	COG0523	cobalamin synthesis protein
ATY48_21610	COG0697	spore germination
ATY48_21620	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY48_21635	COG4771	TonB-dependent receptor
ATY48_21640	COG0457	Tetratricopeptide repeat
ATY48_21655	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY48_21670	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY48_21670	COG0519	Catalyzes the synthesis of GMP from XMP
ATY48_21680	COG0805	protein transport
ATY48_21690	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY48_21700	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY48_21740	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY48_21750	COG4948	Mandelate Racemase Muconate Lactonizing
ATY48_21760	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY48_21765	COG0246	Mannitol dehydrogenase
ATY48_21790	COG3693	PFAM glycoside hydrolase, family 10
ATY48_21795	COG3693	PFAM glycoside hydrolase, family 10
ATY48_21815	COG2211	Major facilitator Superfamily
ATY48_21850	COG3293	Transposase
ATY48_21910	COG1846	Transcriptional regulator
ATY48_21915	COG1764	response to oxidative stress
ATY48_22005	COG3549	Plasmid maintenance system killer
ATY48_22015	COG1074	ATP-dependent DNA helicase activity
ATY48_22020	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY48_22060	COG2032	superoxide dismutase activity
ATY48_22065	COG2032	superoxide dismutase activity
ATY48_22070	COG2204	response regulator
ATY48_22075	COG3852	Histidine kinase
ATY48_22080	COG0004	ammonium transporteR
ATY48_22085	COG0347	Belongs to the P(II) protein family
ATY48_22090	COG0174	glutamine synthetase
ATY48_22140	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY48_22150	COG2062	phosphohistidine phosphatase, SixA
ATY48_22155	COG0489	protein tyrosine kinase activity
ATY48_22175	COG1396	sequence-specific DNA binding
ATY48_22180	COG3550	peptidyl-serine autophosphorylation
ATY48_22185	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY48_22190	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY48_22205	COG1125	glycine betaine transport
ATY48_22205	COG0517	IMP dehydrogenase activity
ATY48_22220	COG1119	ATPase activity
ATY48_22230	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY48_22245	COG3039	Transposase
ATY48_22255	COG2963	transposase activity
ATY48_22270	COG0656	L-ascorbic acid biosynthetic process
ATY48_22275	COG2130	NADP-dependent
ATY48_22280	COG0667	Aldo Keto reductase
ATY48_22290	COG1187	pseudouridine synthase activity
ATY48_22305	COG1643	Atp-dependent helicase
ATY48_22310	COG4807	Protein conserved in bacteria
ATY48_22315	COG4948	Mandelate Racemase Muconate Lactonizing
ATY48_22320	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY48_22325	COG1028	Short-chain dehydrogenase reductase Sdr
ATY48_22345	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY48_22385	COG3162	membrane
ATY48_22390	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY48_22400	COG0708	Exodeoxyribonuclease III
ATY48_22415	COG2091	lysine biosynthetic process via aminoadipic acid
ATY48_22425	COG3540	Alkaline phosphatase
ATY48_22440	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY48_22445	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY48_22470	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY48_22475	COG0583	DNA-binding transcription factor activity
ATY48_22480	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY48_22495	COG0210	DNA helicase
ATY48_22510	COG0531	amino acid
ATY48_22515	COG1322	Protein conserved in bacteria
ATY48_22525	COG0386	Belongs to the glutathione peroxidase family
ATY48_22580	COG0793	Belongs to the peptidase S41A family
ATY48_22585	COG4942	peptidase
ATY48_22595	COG2234	aminopeptidase activity
ATY48_22645	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY48_22650	COG0302	gtp cyclohydrolase
ATY48_22675	COG0477	Major facilitator Superfamily
ATY48_22750	COG1929	Belongs to the glycerate kinase type-1 family
ATY48_22755	COG2271	Major facilitator Superfamily
ATY48_22770	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY48_22775	COG0861	Integral membrane protein TerC family
ATY48_22785	COG0584	glycerophosphoryl diester phosphodiesterase
ATY48_22795	COG0671	phosphoesterase, PA-phosphatase related
ATY48_22805	COG0726	polysaccharide deacetylase
ATY48_22820	COG0230	Belongs to the bacterial ribosomal protein bL34 family