ATY48_00080	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_00085	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_00085	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ATY48_00085	PWY-6638	sulfolactate degradation III
ATY48_00085	PWY-6642	(<i>R</i>)-cysteate degradation
ATY48_00085	PWY-6643	coenzyme M biosynthesis II
ATY48_00085	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY48_00085	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY48_00085	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY48_00110	PWY-6825	phosphatidylcholine biosynthesis V
ATY48_00125	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY48_00125	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY48_00125	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY48_00125	PWY-6113	superpathway of mycolate biosynthesis
ATY48_00125	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY48_00125	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_00125	PWY-7663	gondoate biosynthesis (anaerobic)
ATY48_00125	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY48_00125	PWY-7858	ATY48_00125
ATY48_00125	PWYG-321	mycolate biosynthesis
ATY48_00310	PWY-2661	trehalose biosynthesis V
ATY48_00315	PWY-5941	glycogen degradation II (eukaryotic)
ATY48_00315	PWY-6724	starch degradation II
ATY48_00315	PWY-6737	starch degradation V
ATY48_00315	PWY-7238	sucrose biosynthesis II
ATY48_00320	PWY-2661	trehalose biosynthesis V
ATY48_00325	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY48_00325	PWY-622	starch biosynthesis
ATY48_00325	PWY-7900	ATY48_00325
ATY48_00330	PWY-622	starch biosynthesis
ATY48_00420	PWY-7980	ATY48_00420
ATY48_00785	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY48_00790	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY48_00815	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY48_00815	PWY-622	starch biosynthesis
ATY48_00815	PWY-7900	ATY48_00815
ATY48_00820	PWY-2622	trehalose biosynthesis IV
ATY48_00820	PWY-7900	ATY48_00820
ATY48_00825	PWY-7900	ATY48_00825
ATY48_00890	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
ATY48_00910	PWY-40	putrescine biosynthesis I
ATY48_00910	PWY-43	putrescine biosynthesis II
ATY48_00910	PWY-6305	putrescine biosynthesis IV
ATY48_00910	PWY-6834	spermidine biosynthesis III
ATY48_00980	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_00990	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_01020	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY48_01045	PWY-5686	UMP biosynthesis
ATY48_01045	PWY-7790	ATY48_01045
ATY48_01045	PWY-7791	ATY48_01045
ATY48_01075	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY48_01075	PWY-6453	stigma estolide biosynthesis
ATY48_01075	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY48_01075	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY48_01120	PWY-6134	L-tyrosine biosynthesis IV
ATY48_01120	PWY-7158	L-phenylalanine degradation V
ATY48_01235	PWY-5874	heme degradation
ATY48_01425	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_01425	PWY-6416	quinate degradation II
ATY48_01425	PWY-6707	gallate biosynthesis
ATY48_01450	PWY-5530	sorbitol biosynthesis II
ATY48_01650	PWY-6654	phosphopantothenate biosynthesis III
ATY48_01760	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_01760	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY48_01790	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_01885	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY48_01885	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY48_01890	PWY-3961	phosphopantothenate biosynthesis II
ATY48_01905	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY48_01905	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_01905	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_01905	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY48_01905	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY48_01905	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY48_01925	PWY-31	canavanine degradation
ATY48_01925	PWY-4984	urea cycle
ATY48_01925	PWY-6305	putrescine biosynthesis IV
ATY48_01925	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY48_02040	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY48_02045	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_02045	PWY-6578	8-amino-7-oxononanoate biosynthesis III
ATY48_02045	PWY-7147	8-amino-7-oxononanoate biosynthesis II
ATY48_02105	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY48_02130	PWY-5392	reductive TCA cycle II
ATY48_02130	PWY-5537	pyruvate fermentation to acetate V
ATY48_02130	PWY-5538	pyruvate fermentation to acetate VI
ATY48_02130	PWY-5690	TCA cycle II (plants and fungi)
ATY48_02130	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_02130	PWY-6728	methylaspartate cycle
ATY48_02130	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_02130	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY48_02140	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY48_02140	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_02140	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY48_02140	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY48_02140	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_02140	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_02140	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_02140	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY48_02145	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY48_02145	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_02145	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY48_02145	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY48_02145	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_02145	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_02145	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_02145	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY48_02180	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY48_02180	PWY-2361	3-oxoadipate degradation
ATY48_02180	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY48_02185	PWY-6041	4-sulfocatechol degradation
ATY48_02190	PWY-6041	4-sulfocatechol degradation
ATY48_02195	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY48_02195	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY48_02195	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_02195	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY48_02200	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY48_02255	PWY-7851	ATY48_02255
ATY48_02265	PWY-6749	CMP-legionaminate biosynthesis I
ATY48_02310	PWY-5686	UMP biosynthesis
ATY48_02310	PWY-7790	ATY48_02310
ATY48_02310	PWY-7791	ATY48_02310
ATY48_02330	PWY-7883	ATY48_02330
ATY48_02430	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_02430	PWY-7761	ATY48_02430
ATY48_02485	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY48_02485	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY48_02485	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY48_02495	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY48_02495	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY48_02495	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY48_02580	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_02580	PWY-6416	quinate degradation II
ATY48_02580	PWY-6707	gallate biosynthesis
ATY48_02750	PWY-6168	flavin biosynthesis III (fungi)
ATY48_02750	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY48_02750	PWY-7991	ATY48_02750
ATY48_03215	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY48_03355	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY48_03355	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY48_03395	PWY-7980	ATY48_03395
ATY48_03405	PWY-7980	ATY48_03405
ATY48_03415	PWY-3461	L-tyrosine biosynthesis II
ATY48_03415	PWY-3462	L-phenylalanine biosynthesis II
ATY48_03415	PWY-6120	L-tyrosine biosynthesis III
ATY48_03415	PWY-6627	salinosporamide A biosynthesis
ATY48_03415	PWY-7626	bacilysin biosynthesis
ATY48_03425	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_03470	PWY-6749	CMP-legionaminate biosynthesis I
ATY48_03500	PWY-5386	methylglyoxal degradation I
ATY48_03540	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY48_03540	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY48_03540	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY48_03540	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY48_03540	PWY-6113	superpathway of mycolate biosynthesis
ATY48_03540	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY48_03540	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_03540	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY48_03540	PWY-7663	gondoate biosynthesis (anaerobic)
ATY48_03540	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY48_03540	PWY-7858	ATY48_03540
ATY48_03540	PWYG-321	mycolate biosynthesis
ATY48_03550	PWY-181	photorespiration
ATY48_03565	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY48_03695	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY48_03695	PWY-6808	dTDP-D-forosamine biosynthesis
ATY48_03695	PWY-6942	dTDP-D-desosamine biosynthesis
ATY48_03695	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY48_03695	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY48_03695	PWY-6974	dTDP-L-olivose biosynthesis
ATY48_03695	PWY-6976	dTDP-L-mycarose biosynthesis
ATY48_03695	PWY-7104	dTDP-L-megosamine biosynthesis
ATY48_03695	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY48_03695	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY48_03695	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY48_03695	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY48_03695	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY48_03695	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY48_03695	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY48_03695	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY48_03695	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY48_03695	PWY-7688	ATY48_03695
ATY48_03695	PWY-7814	ATY48_03695
ATY48_03700	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY48_03700	PWY-6808	dTDP-D-forosamine biosynthesis
ATY48_03700	PWY-6942	dTDP-D-desosamine biosynthesis
ATY48_03700	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY48_03700	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY48_03700	PWY-6974	dTDP-L-olivose biosynthesis
ATY48_03700	PWY-6976	dTDP-L-mycarose biosynthesis
ATY48_03700	PWY-7104	dTDP-L-megosamine biosynthesis
ATY48_03700	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY48_03700	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY48_03700	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY48_03700	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY48_03700	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY48_03700	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY48_03700	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY48_03700	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY48_03700	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY48_03700	PWY-7688	ATY48_03700
ATY48_03700	PWY-7814	ATY48_03700
ATY48_03715	PWY-5659	GDP-mannose biosynthesis
ATY48_03715	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
ATY48_03720	PWY-6749	CMP-legionaminate biosynthesis I
ATY48_03790	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY48_03865	PWY-6825	phosphatidylcholine biosynthesis V
ATY48_03920	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY48_03920	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY48_03920	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY48_04100	PWY-4381	fatty acid biosynthesis initiation I
ATY48_04110	PWY-4381	fatty acid biosynthesis initiation I
ATY48_04110	PWY-6799	fatty acid biosynthesis (plant mitochondria)
ATY48_04110	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY48_04115	PWY-5367	petroselinate biosynthesis
ATY48_04115	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY48_04115	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY48_04115	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY48_04115	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY48_04115	PWY-6113	superpathway of mycolate biosynthesis
ATY48_04115	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY48_04115	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_04115	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY48_04115	PWY-7663	gondoate biosynthesis (anaerobic)
ATY48_04115	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY48_04115	PWY-7858	ATY48_04115
ATY48_04115	PWYG-321	mycolate biosynthesis
ATY48_04130	PWY-5958	acridone alkaloid biosynthesis
ATY48_04130	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY48_04130	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY48_04165	PWY-5747	2-methylcitrate cycle II
ATY48_04270	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_04325	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY48_04380	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY48_04385	PWY-6871	3-methylbutanol biosynthesis
ATY48_04400	PWY-5101	L-isoleucine biosynthesis II
ATY48_04400	PWY-5103	L-isoleucine biosynthesis III
ATY48_04400	PWY-5104	L-isoleucine biosynthesis IV
ATY48_04400	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ATY48_04400	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ATY48_04400	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ATY48_04400	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY48_04405	PWY-5103	L-isoleucine biosynthesis III
ATY48_04405	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY48_04410	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
ATY48_04435	PWY-7805	ATY48_04435
ATY48_04435	PWY-7807	ATY48_04435
ATY48_04470	PWY-1042	glycolysis IV (plant cytosol)
ATY48_04470	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_04470	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_04470	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_04475	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_04480	PWY-7883	ATY48_04480
ATY48_04510	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY48_04510	PWY-5392	reductive TCA cycle II
ATY48_04510	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY48_04510	PWY-5690	TCA cycle II (plants and fungi)
ATY48_04510	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_04510	PWY-6728	methylaspartate cycle
ATY48_04510	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_04510	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY48_04510	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY48_04530	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ATY48_04540	PWY-6164	3-dehydroquinate biosynthesis I
ATY48_04850	PWY-5386	methylglyoxal degradation I
ATY48_04940	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY48_04940	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
ATY48_04950	PWY-6823	molybdenum cofactor biosynthesis
ATY48_04960	PWY-6823	molybdenum cofactor biosynthesis
ATY48_04970	PWY-6823	molybdenum cofactor biosynthesis
ATY48_04970	PWY-7887	ATY48_04970
ATY48_05045	PWY-6717	(1,4)-&beta;-xylan degradation
ATY48_05045	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY48_05050	PWY-6769	rhamnogalacturonan type I degradation I (fungi)
ATY48_05050	PWY-6771	rhamnogalacturonan type I degradation II (bacteria)
ATY48_05150	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY48_05150	PWY-5741	ethylmalonyl-CoA pathway
ATY48_05150	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY48_05150	PWY-7948	ATY48_05150
ATY48_05235	PWY-1281	sulfoacetaldehyde degradation I
ATY48_05235	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY48_05235	PWY-5482	pyruvate fermentation to acetate II
ATY48_05235	PWY-5485	pyruvate fermentation to acetate IV
ATY48_05235	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY48_05235	PWY-6637	sulfolactate degradation II
ATY48_05235	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY48_05275	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY48_05275	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY48_05275	PWY-6897	thiamin salvage II
ATY48_05275	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY48_05275	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY48_05275	PWY-7356	thiamin salvage IV (yeast)
ATY48_05275	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY48_05295	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_05295	PWY-5723	Rubisco shunt
ATY48_05325	PWY-7799	ATY48_05325
ATY48_05325	PWY-7800	ATY48_05325
ATY48_05385	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_05440	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_05440	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_05440	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_05440	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_05530	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_05530	PWY-5723	Rubisco shunt
ATY48_05530	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY48_05530	PWY-6892	thiazole biosynthesis I (E. coli)
ATY48_05530	PWY-6901	superpathway of glucose and xylose degradation
ATY48_05530	PWY-7560	methylerythritol phosphate pathway II
ATY48_05675	PWY-1042	glycolysis IV (plant cytosol)
ATY48_05675	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_05675	PWY-6901	superpathway of glucose and xylose degradation
ATY48_05675	PWY-7003	glycerol degradation to butanol
ATY48_05810	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_05900	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ATY48_05900	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY48_05900	PWY-7766	ATY48_05900
ATY48_05910	PWY-6164	3-dehydroquinate biosynthesis I
ATY48_05915	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_05920	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY48_05920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY48_06135	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY48_06135	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY48_06150	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_06150	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_06150	PWY-7953	ATY48_06150
ATY48_06170	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY48_06170	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY48_06185	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY48_06185	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY48_06185	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY48_06285	PWY-6317	galactose degradation I (Leloir pathway)
ATY48_06310	PWY-723	alkylnitronates degradation
ATY48_06330	PWY-6829	tRNA methylation (yeast)
ATY48_06330	PWY-7285	methylwyosine biosynthesis
ATY48_06330	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
ATY48_06430	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY48_06430	PWY-7962	ATY48_06430
ATY48_06430	PWY-7971	ATY48_06430
ATY48_06430	PWY-7972	ATY48_06430
ATY48_06435	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY48_06435	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY48_06435	PWY-7964	ATY48_06435
ATY48_06435	PWY-7965	ATY48_06435
ATY48_06435	PWY-7966	ATY48_06435
ATY48_06435	PWY-7967	ATY48_06435
ATY48_06435	PWY-7968	ATY48_06435
ATY48_06435	PWY-7969	ATY48_06435
ATY48_06435	PWY-7970	ATY48_06435
ATY48_06445	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY48_06445	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY48_06445	PWY-7961	ATY48_06445
ATY48_06445	PWY-7963	ATY48_06445
ATY48_06445	PWY-7964	ATY48_06445
ATY48_06445	PWY-7965	ATY48_06445
ATY48_06445	PWY-7966	ATY48_06445
ATY48_06445	PWY-7967	ATY48_06445
ATY48_06445	PWY-7968	ATY48_06445
ATY48_06445	PWY-7969	ATY48_06445
ATY48_06445	PWY-7970	ATY48_06445
ATY48_06445	PWY-7975	ATY48_06445
ATY48_06655	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
ATY48_06725	PWY-3341	L-proline biosynthesis III
ATY48_06725	PWY-4981	L-proline biosynthesis II (from arginine)
ATY48_06725	PWY-6344	L-ornithine degradation II (Stickland reaction)
ATY48_06730	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY48_06790	PWY-5686	UMP biosynthesis
ATY48_06790	PWY-7790	ATY48_06790
ATY48_06790	PWY-7791	ATY48_06790
ATY48_06820	PWY-2941	L-lysine biosynthesis II
ATY48_06820	PWY-2942	L-lysine biosynthesis III
ATY48_06820	PWY-5097	L-lysine biosynthesis VI
ATY48_06820	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY48_06820	PWY-6559	spermidine biosynthesis II
ATY48_06820	PWY-6562	norspermidine biosynthesis
ATY48_06820	PWY-7153	grixazone biosynthesis
ATY48_06820	PWY-7977	ATY48_06820
ATY48_06835	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_06835	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_07000	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY48_07000	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_07155	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_07510	PWY-7851	ATY48_07510
ATY48_07565	PWY-5392	reductive TCA cycle II
ATY48_07565	PWY-5537	pyruvate fermentation to acetate V
ATY48_07565	PWY-5538	pyruvate fermentation to acetate VI
ATY48_07565	PWY-5690	TCA cycle II (plants and fungi)
ATY48_07565	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_07565	PWY-6728	methylaspartate cycle
ATY48_07565	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_07565	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY48_07570	PWY-5392	reductive TCA cycle II
ATY48_07570	PWY-5537	pyruvate fermentation to acetate V
ATY48_07570	PWY-5538	pyruvate fermentation to acetate VI
ATY48_07570	PWY-5690	TCA cycle II (plants and fungi)
ATY48_07570	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_07570	PWY-6728	methylaspartate cycle
ATY48_07570	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_07570	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY48_07580	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_07580	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY48_07580	PWY-7761	ATY48_07580
ATY48_07660	PWY-7802	ATY48_07660
ATY48_07740	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
ATY48_07740	PWY-6167	flavin biosynthesis II (archaea)
ATY48_07740	PWY-6168	flavin biosynthesis III (fungi)
ATY48_07740	PWY-7863	ATY48_07740
ATY48_07750	PWY-7884	ATY48_07750
ATY48_07755	PWY-7560	methylerythritol phosphate pathway II
ATY48_07770	PWY-3781	aerobic respiration I (cytochrome c)
ATY48_07770	PWY-4521	arsenite oxidation I (respiratory)
ATY48_07770	PWY-6692	Fe(II) oxidation
ATY48_07770	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY48_07770	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
ATY48_07880	PWY-7782	ATY48_07880
ATY48_07880	PWY-7783	ATY48_07880
ATY48_07985	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY48_08045	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY48_08085	PWY-2722	trehalose degradation IV
ATY48_08085	PWY-2723	trehalose degradation V
ATY48_08085	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_08085	PWY-5661	GDP-glucose biosynthesis
ATY48_08085	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_08085	PWY-7238	sucrose biosynthesis II
ATY48_08085	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_08090	PWY-2722	trehalose degradation IV
ATY48_08090	PWY-2723	trehalose degradation V
ATY48_08090	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_08090	PWY-5661	GDP-glucose biosynthesis
ATY48_08090	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_08090	PWY-7238	sucrose biosynthesis II
ATY48_08090	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_08095	PWY-2722	trehalose degradation IV
ATY48_08095	PWY-2723	trehalose degradation V
ATY48_08095	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_08095	PWY-5661	GDP-glucose biosynthesis
ATY48_08095	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_08095	PWY-7238	sucrose biosynthesis II
ATY48_08095	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_08130	PWY-6420	pyrroloquinoline quinone biosynthesis
ATY48_08155	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_08155	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_08155	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_08155	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_08305	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_08380	PWY-6902	chitin degradation II
ATY48_08380	PWY-7822	ATY48_08380
ATY48_08380	PWY-7883	ATY48_08380
ATY48_08390	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_08400	PWY-2722	trehalose degradation IV
ATY48_08400	PWY-2723	trehalose degradation V
ATY48_08400	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_08400	PWY-5661	GDP-glucose biosynthesis
ATY48_08400	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_08400	PWY-7238	sucrose biosynthesis II
ATY48_08400	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_08475	PWY-7094	fatty acid salvage
ATY48_08475	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY48_08505	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_08505	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_08505	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_08505	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_08545	PWY-801	L-homocysteine and L-cysteine interconversion
ATY48_08610	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_08620	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_08625	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_08645	PWY-5642	2,4-dinitrotoluene degradation
ATY48_08675	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY48_08675	PWY-5109	2-methylbutanoate biosynthesis
ATY48_08675	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY48_08675	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY48_08675	PWY-5177	glutaryl-CoA degradation
ATY48_08675	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_08675	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY48_08675	PWY-6583	pyruvate fermentation to butanol I
ATY48_08675	PWY-6863	pyruvate fermentation to hexanol
ATY48_08675	PWY-6883	pyruvate fermentation to butanol II
ATY48_08675	PWY-6944	androstenedione degradation
ATY48_08675	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY48_08675	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY48_08675	PWY-7007	methyl ketone biosynthesis
ATY48_08675	PWY-7046	4-coumarate degradation (anaerobic)
ATY48_08675	PWY-7094	fatty acid salvage
ATY48_08675	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY48_08675	PWY-735	jasmonic acid biosynthesis
ATY48_08675	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY48_08675	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY48_08675	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY48_08675	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ATY48_08675	PWY-7726	ATY48_08675
ATY48_08675	PWY-7778	ATY48_08675
ATY48_08675	PWY-7779	ATY48_08675
ATY48_08765	PWY-6902	chitin degradation II
ATY48_08765	PWY-7822	ATY48_08765
ATY48_08765	PWY-7883	ATY48_08765
ATY48_09215	PWY-4381	fatty acid biosynthesis initiation I
ATY48_09215	PWY-5743	3-hydroxypropanoate cycle
ATY48_09215	PWY-5744	glyoxylate assimilation
ATY48_09215	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_09215	PWY-6722	candicidin biosynthesis
ATY48_09240	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY48_09240	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY48_09240	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY48_09240	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY48_09240	PWY-6113	superpathway of mycolate biosynthesis
ATY48_09240	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY48_09240	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_09240	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY48_09240	PWY-7663	gondoate biosynthesis (anaerobic)
ATY48_09240	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY48_09240	PWY-7858	ATY48_09240
ATY48_09240	PWYG-321	mycolate biosynthesis
ATY48_09260	PWY-7560	methylerythritol phosphate pathway II
ATY48_09265	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY48_09265	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY48_09265	PWY-7817	ATY48_09265
ATY48_09330	PWY-7799	ATY48_09330
ATY48_09330	PWY-7800	ATY48_09330
ATY48_09470	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_09470	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_09470	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_09470	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_09475	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY48_09475	PWY-6892	thiazole biosynthesis I (E. coli)
ATY48_09475	PWY-7560	methylerythritol phosphate pathway II
ATY48_09555	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY48_09555	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY48_09560	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
ATY48_09595	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY48_09595	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY48_09600	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY48_09605	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY48_09630	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY48_09630	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY48_09630	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_09630	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY48_09670	PWY-5392	reductive TCA cycle II
ATY48_09670	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY48_09670	PWY-5690	TCA cycle II (plants and fungi)
ATY48_09670	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_09670	PWY-6728	methylaspartate cycle
ATY48_09670	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_09670	PWY-7254	TCA cycle VII (acetate-producers)
ATY48_09670	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY48_09725	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
ATY48_09725	PWY-7820	ATY48_09725
ATY48_09765	PWY-2201	folate transformations I
ATY48_09765	PWY-3841	folate transformations II
ATY48_09765	PWY-7977	ATY48_09765
ATY48_09815	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY48_09975	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
ATY48_10075	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY48_10075	PWY-5389	3-methylthiopropanoate biosynthesis
ATY48_10080	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY48_10195	PWY-7942	ATY48_10195
ATY48_10260	PWY-5941	glycogen degradation II (eukaryotic)
ATY48_10260	PWY-6724	starch degradation II
ATY48_10260	PWY-6737	starch degradation V
ATY48_10260	PWY-7238	sucrose biosynthesis II
ATY48_10285	PWY-43	putrescine biosynthesis II
ATY48_10300	PWY-7205	CMP phosphorylation
ATY48_10325	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_10325	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_10325	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_10335	PWY-3801	sucrose degradation II (sucrose synthase)
ATY48_10335	PWY-6527	stachyose degradation
ATY48_10335	PWY-7238	sucrose biosynthesis II
ATY48_10335	PWY-7343	UDP-glucose biosynthesis
ATY48_10335	PWY-7817	ATY48_10335
ATY48_10375	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
ATY48_10375	PWY-2201	folate transformations I
ATY48_10375	PWY-3841	folate transformations II
ATY48_10375	PWY-5030	L-histidine degradation III
ATY48_10375	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY48_10375	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY48_10375	PWY-7909	ATY48_10375
ATY48_10380	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY48_10380	PWY-6596	adenosine nucleotides degradation I
ATY48_10380	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_10385	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_10465	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_10465	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_10480	PWY-6502	oxidized GTP and dGTP detoxification
ATY48_10585	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_10585	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_10595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_10595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_10595	PWY-7953	ATY48_10595
ATY48_10600	PWY-5686	UMP biosynthesis
ATY48_10630	PWY-2941	L-lysine biosynthesis II
ATY48_10630	PWY-2942	L-lysine biosynthesis III
ATY48_10630	PWY-5097	L-lysine biosynthesis VI
ATY48_10630	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY48_10630	PWY-6559	spermidine biosynthesis II
ATY48_10630	PWY-6562	norspermidine biosynthesis
ATY48_10630	PWY-7153	grixazone biosynthesis
ATY48_10630	PWY-7977	ATY48_10630
ATY48_10635	PWY-702	L-methionine biosynthesis II
ATY48_11010	PWY-5269	cardiolipin biosynthesis II
ATY48_11010	PWY-5668	cardiolipin biosynthesis I
ATY48_11010	PWY-7817	ATY48_11010
ATY48_11030	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY48_11090	PWY-3781	aerobic respiration I (cytochrome c)
ATY48_11090	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY48_11090	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY48_11090	PWY-5690	TCA cycle II (plants and fungi)
ATY48_11090	PWY-6728	methylaspartate cycle
ATY48_11090	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_11090	PWY-7254	TCA cycle VII (acetate-producers)
ATY48_11090	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY48_11100	PWY-3781	aerobic respiration I (cytochrome c)
ATY48_11100	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY48_11100	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY48_11100	PWY-5690	TCA cycle II (plants and fungi)
ATY48_11100	PWY-6728	methylaspartate cycle
ATY48_11100	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_11100	PWY-7254	TCA cycle VII (acetate-producers)
ATY48_11100	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY48_11125	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY48_11130	PWY-2722	trehalose degradation IV
ATY48_11130	PWY-2723	trehalose degradation V
ATY48_11130	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_11130	PWY-5661	GDP-glucose biosynthesis
ATY48_11130	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_11130	PWY-7238	sucrose biosynthesis II
ATY48_11130	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_11135	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_11135	PWY-6855	chitin degradation I (archaea)
ATY48_11135	PWY-6906	chitin derivatives degradation
ATY48_11140	PWY-5101	L-isoleucine biosynthesis II
ATY48_11140	PWY-5103	L-isoleucine biosynthesis III
ATY48_11140	PWY-5104	L-isoleucine biosynthesis IV
ATY48_11140	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY48_11145	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY48_11145	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY48_11145	PWY-7242	D-fructuronate degradation
ATY48_11145	PWY-7310	D-glucosaminate degradation
ATY48_11145	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY48_11240	PWY-6803	phosphatidylcholine acyl editing
ATY48_11240	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ATY48_11240	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ATY48_11240	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY48_11240	PWY-7783	ATY48_11240
ATY48_11250	PWY-5392	reductive TCA cycle II
ATY48_11250	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY48_11250	PWY-5690	TCA cycle II (plants and fungi)
ATY48_11250	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_11250	PWY-6728	methylaspartate cycle
ATY48_11250	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_11250	PWY-7254	TCA cycle VII (acetate-producers)
ATY48_11250	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY48_11380	PWY-3801	sucrose degradation II (sucrose synthase)
ATY48_11380	PWY-5054	sorbitol biosynthesis I
ATY48_11380	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
ATY48_11380	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY48_11380	PWY-5659	GDP-mannose biosynthesis
ATY48_11380	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_11380	PWY-621	sucrose degradation III (sucrose invertase)
ATY48_11380	PWY-622	starch biosynthesis
ATY48_11380	PWY-6981	chitin biosynthesis
ATY48_11380	PWY-6992	1,5-anhydrofructose degradation
ATY48_11380	PWY-7238	sucrose biosynthesis II
ATY48_11380	PWY-7347	sucrose biosynthesis III
ATY48_11380	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_11385	PWY-5155	&beta;-alanine biosynthesis III
ATY48_11395	PWY-6654	phosphopantothenate biosynthesis III
ATY48_11400	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY48_11400	PWY-6148	tetrahydromethanopterin biosynthesis
ATY48_11400	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY48_11400	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY48_11400	PWY-7852	ATY48_11400
ATY48_11400	PWY-7853	ATY48_11400
ATY48_11415	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY48_11415	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY48_11415	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY48_11415	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY48_11415	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY48_11415	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY48_11415	PWY-7852	ATY48_11415
ATY48_11490	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_11495	PWY-3461	L-tyrosine biosynthesis II
ATY48_11495	PWY-3462	L-phenylalanine biosynthesis II
ATY48_11495	PWY-6120	L-tyrosine biosynthesis III
ATY48_11495	PWY-6627	salinosporamide A biosynthesis
ATY48_11495	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
ATY48_11495	PWY-7626	bacilysin biosynthesis
ATY48_11550	PWY-5028	L-histidine degradation II
ATY48_11550	PWY-5030	L-histidine degradation III
ATY48_11555	PWY-5028	L-histidine degradation II
ATY48_11555	PWY-5030	L-histidine degradation III
ATY48_11565	PWY-5028	L-histidine degradation II
ATY48_11565	PWY-5030	L-histidine degradation III
ATY48_11595	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY48_11595	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
ATY48_11680	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY48_11680	PWY-5743	3-hydroxypropanoate cycle
ATY48_11680	PWY-5744	glyoxylate assimilation
ATY48_11680	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_11680	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_11680	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY48_11680	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY48_11685	PWY-5647	2-nitrobenzoate degradation I
ATY48_11685	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY48_11685	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY48_11685	PWY-6505	L-tryptophan degradation XII (Geobacillus)
ATY48_11695	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY48_11695	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY48_11700	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY48_11700	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY48_11700	PWY-7717	ATY48_11700
ATY48_11700	PWY-7765	ATY48_11700
ATY48_11725	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_11725	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY48_11725	PWY-6596	adenosine nucleotides degradation I
ATY48_11725	PWY-6606	guanosine nucleotides degradation II
ATY48_11725	PWY-6607	guanosine nucleotides degradation I
ATY48_11725	PWY-6608	guanosine nucleotides degradation III
ATY48_11725	PWY-7185	UTP and CTP dephosphorylation I
ATY48_11725	PWY-7821	ATY48_11725
ATY48_11730	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY48_11730	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY48_11730	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
ATY48_11820	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY48_11820	PWY-5743	3-hydroxypropanoate cycle
ATY48_11820	PWY-5744	glyoxylate assimilation
ATY48_11820	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_11820	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_11820	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY48_11820	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY48_11950	PWY-6700	queuosine biosynthesis
ATY48_11955	PWY-6700	queuosine biosynthesis
ATY48_12005	PWY-4702	phytate degradation I
ATY48_12020	PWY-7183	pyrimidine nucleobases salvage I
ATY48_12040	PWY-4041	&gamma;-glutamyl cycle
ATY48_12040	PWY-4061	glutathione-mediated detoxification I
ATY48_12040	PWY-5826	hypoglycin biosynthesis
ATY48_12040	PWY-6842	glutathione-mediated detoxification II
ATY48_12040	PWY-7112	4-hydroxy-2-nonenal detoxification
ATY48_12040	PWY-7559	glutathione degradation (DUG pathway - yeast)
ATY48_12060	PWY-7851	ATY48_12060
ATY48_12160	PWY-6823	molybdenum cofactor biosynthesis
ATY48_12195	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY48_12195	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY48_12195	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_12195	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_12195	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY48_12195	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY48_12195	PWY-7205	CMP phosphorylation
ATY48_12195	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY48_12195	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_12195	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY48_12195	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_12195	PWY-7224	purine deoxyribonucleosides salvage
ATY48_12195	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_12195	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY48_12205	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY48_12205	PWY-5109	2-methylbutanoate biosynthesis
ATY48_12205	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY48_12205	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY48_12205	PWY-5177	glutaryl-CoA degradation
ATY48_12205	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_12205	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY48_12205	PWY-6583	pyruvate fermentation to butanol I
ATY48_12205	PWY-6863	pyruvate fermentation to hexanol
ATY48_12205	PWY-6883	pyruvate fermentation to butanol II
ATY48_12205	PWY-6944	androstenedione degradation
ATY48_12205	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY48_12205	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY48_12205	PWY-7007	methyl ketone biosynthesis
ATY48_12205	PWY-7046	4-coumarate degradation (anaerobic)
ATY48_12205	PWY-7094	fatty acid salvage
ATY48_12205	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY48_12205	PWY-735	jasmonic acid biosynthesis
ATY48_12205	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY48_12205	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY48_12205	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY48_12205	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ATY48_12205	PWY-7726	ATY48_12205
ATY48_12205	PWY-7778	ATY48_12205
ATY48_12205	PWY-7779	ATY48_12205
ATY48_12280	PWY-7801	ATY48_12280
ATY48_12305	PWY-7887	ATY48_12305
ATY48_12305	PWY-7892	ATY48_12305
ATY48_12480	PWY-4381	fatty acid biosynthesis initiation I
ATY48_12540	PWY-7980	ATY48_12540
ATY48_12850	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
ATY48_12870	PWY-3341	L-proline biosynthesis III
ATY48_12870	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY48_12875	PWY-3341	L-proline biosynthesis III
ATY48_12875	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY48_12890	PWY-4983	L-citrulline-nitric oxide cycle
ATY48_12890	PWY-4984	urea cycle
ATY48_12890	PWY-5	canavanine biosynthesis
ATY48_12890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_12890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_12895	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_12895	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_12905	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_12905	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_12920	PWY-4983	L-citrulline-nitric oxide cycle
ATY48_12920	PWY-4984	urea cycle
ATY48_12920	PWY-5	canavanine biosynthesis
ATY48_12920	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_12920	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_12925	PWY-5686	UMP biosynthesis
ATY48_12925	PWY-7790	ATY48_12925
ATY48_12925	PWY-7791	ATY48_12925
ATY48_12970	PWY-5686	UMP biosynthesis
ATY48_12970	PWY-7790	ATY48_12970
ATY48_12970	PWY-7791	ATY48_12970
ATY48_13020	PWY-1081	homogalacturonan degradation
ATY48_13020	PWY-7246	pectin degradation II
ATY48_13020	PWY-7248	pectin degradation III
ATY48_13050	PWY-181	photorespiration
ATY48_13055	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
ATY48_13055	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
ATY48_13055	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
ATY48_13055	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
ATY48_13055	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
ATY48_13055	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
ATY48_13055	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
ATY48_13055	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
ATY48_13055	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
ATY48_13055	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
ATY48_13095	PWY-2301	<i>myo</i>-inositol biosynthesis
ATY48_13095	PWY-4702	phytate degradation I
ATY48_13095	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
ATY48_13100	PWY-6854	ethylene biosynthesis III (microbes)
ATY48_13130	PWY-6605	adenine and adenosine salvage II
ATY48_13130	PWY-6610	adenine and adenosine salvage IV
ATY48_13130	PWY-7805	ATY48_13130
ATY48_13130	PWY-7807	ATY48_13130
ATY48_13185	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY48_13185	PWY-5741	ethylmalonyl-CoA pathway
ATY48_13185	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY48_13185	PWY-7948	ATY48_13185
ATY48_13220	PWY-6938	NADH repair
ATY48_13225	PWY-6700	queuosine biosynthesis
ATY48_13355	PWY-3781	aerobic respiration I (cytochrome c)
ATY48_13355	PWY-6692	Fe(II) oxidation
ATY48_13355	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
ATY48_13355	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY48_13465	PWY-381	nitrate reduction II (assimilatory)
ATY48_13465	PWY-5675	nitrate reduction V (assimilatory)
ATY48_13465	PWY-6549	L-glutamine biosynthesis III
ATY48_13465	PWY-6963	ammonia assimilation cycle I
ATY48_13465	PWY-6964	ammonia assimilation cycle II
ATY48_13475	PWY-381	nitrate reduction II (assimilatory)
ATY48_13475	PWY-5675	nitrate reduction V (assimilatory)
ATY48_13475	PWY-6549	L-glutamine biosynthesis III
ATY48_13475	PWY-6963	ammonia assimilation cycle I
ATY48_13475	PWY-6964	ammonia assimilation cycle II
ATY48_13555	PWY-5022	4-aminobutanoate degradation V
ATY48_13555	PWY-6728	methylaspartate cycle
ATY48_13555	PWY-7126	ethylene biosynthesis IV
ATY48_13810	PWY-6854	ethylene biosynthesis III (microbes)
ATY48_13975	PWY-5747	2-methylcitrate cycle II
ATY48_14060	PWY-7805	ATY48_14060
ATY48_14060	PWY-7807	ATY48_14060
ATY48_14075	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_14075	PWY-5686	UMP biosynthesis
ATY48_14075	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_14075	PWY-7790	ATY48_14075
ATY48_14075	PWY-7791	ATY48_14075
ATY48_14085	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_14085	PWY-5686	UMP biosynthesis
ATY48_14085	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_14085	PWY-7790	ATY48_14085
ATY48_14085	PWY-7791	ATY48_14085
ATY48_14090	PWY-2941	L-lysine biosynthesis II
ATY48_14090	PWY-2942	L-lysine biosynthesis III
ATY48_14090	PWY-5097	L-lysine biosynthesis VI
ATY48_14200	PWY-4261	glycerol degradation I
ATY48_14210	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_14230	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY48_14230	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY48_14230	PWY-7242	D-fructuronate degradation
ATY48_14230	PWY-7310	D-glucosaminate degradation
ATY48_14230	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY48_14245	PWY-7130	L-glucose degradation
ATY48_14260	PWY-2941	L-lysine biosynthesis II
ATY48_14260	PWY-2942	L-lysine biosynthesis III
ATY48_14260	PWY-5097	L-lysine biosynthesis VI
ATY48_14290	PWY-6910	hydroxymethylpyrimidine salvage
ATY48_14290	PWY-7356	thiamin salvage IV (yeast)
ATY48_14290	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY48_14345	PWY-2681	<i>trans</i>-zeatin biosynthesis
ATY48_14415	PWY-2781	<i>cis</i>-zeatin biosynthesis
ATY48_14420	PWY-6614	tetrahydrofolate biosynthesis
ATY48_14460	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_14460	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY48_14460	PWY-6596	adenosine nucleotides degradation I
ATY48_14460	PWY-6606	guanosine nucleotides degradation II
ATY48_14460	PWY-6607	guanosine nucleotides degradation I
ATY48_14460	PWY-6608	guanosine nucleotides degradation III
ATY48_14460	PWY-7185	UTP and CTP dephosphorylation I
ATY48_14460	PWY-7821	ATY48_14460
ATY48_14475	PWY-7560	methylerythritol phosphate pathway II
ATY48_14480	PWY-7560	methylerythritol phosphate pathway II
ATY48_14490	PWY-1042	glycolysis IV (plant cytosol)
ATY48_14490	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY48_14490	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY48_14490	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_14490	PWY-5723	Rubisco shunt
ATY48_14490	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_14490	PWY-6886	1-butanol autotrophic biosynthesis
ATY48_14490	PWY-6901	superpathway of glucose and xylose degradation
ATY48_14490	PWY-7003	glycerol degradation to butanol
ATY48_14490	PWY-7124	ethylene biosynthesis V (engineered)
ATY48_14490	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY48_14500	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY48_14500	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY48_14505	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY48_14505	PWY-7177	UTP and CTP dephosphorylation II
ATY48_14505	PWY-7185	UTP and CTP dephosphorylation I
ATY48_14650	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_14650	PWY-6578	8-amino-7-oxononanoate biosynthesis III
ATY48_14650	PWY-7147	8-amino-7-oxononanoate biosynthesis II
ATY48_14665	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY48_14665	PWY-7688	ATY48_14665
ATY48_15045	PWY-7158	L-phenylalanine degradation V
ATY48_15130	PWY-6012	acyl carrier protein metabolism I
ATY48_15130	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY48_15130	PWY-6289	petrobactin biosynthesis
ATY48_15200	PWY-5194	siroheme biosynthesis
ATY48_15200	PWY-5196	factor 430 biosynthesis
ATY48_15200	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY48_15270	PWY-5194	siroheme biosynthesis
ATY48_15270	PWY-5196	factor 430 biosynthesis
ATY48_15270	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY48_15300	PWY-6823	molybdenum cofactor biosynthesis
ATY48_15665	PWY-6655	xanthan biosynthesis
ATY48_15665	PWY-6658	acetan biosynthesis
ATY48_15795	PWY-6617	adenosine nucleotides degradation III
ATY48_15795	PWY-7569	arginomycin biosynthesis
ATY48_15795	PWY-7570	blasticidin S biosynthesis
ATY48_15820	PWY-6854	ethylene biosynthesis III (microbes)
ATY48_15830	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY48_15830	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY48_15840	PWY-5316	nicotine biosynthesis
ATY48_15840	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_15840	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY48_15840	PWY-7342	superpathway of nicotine biosynthesis
ATY48_15970	PWY-1042	glycolysis IV (plant cytosol)
ATY48_15970	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_15970	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_15970	PWY-7003	glycerol degradation to butanol
ATY48_16020	PWY-6749	CMP-legionaminate biosynthesis I
ATY48_16025	PWY-4381	fatty acid biosynthesis initiation I
ATY48_16025	PWY-5743	3-hydroxypropanoate cycle
ATY48_16025	PWY-5744	glyoxylate assimilation
ATY48_16025	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_16025	PWY-6722	candicidin biosynthesis
ATY48_16070	PWY-2941	L-lysine biosynthesis II
ATY48_16070	PWY-2942	L-lysine biosynthesis III
ATY48_16070	PWY-5097	L-lysine biosynthesis VI
ATY48_16070	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY48_16070	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY48_16070	PWY-6559	spermidine biosynthesis II
ATY48_16070	PWY-6562	norspermidine biosynthesis
ATY48_16070	PWY-7153	grixazone biosynthesis
ATY48_16070	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY48_16070	PWY-7977	ATY48_16070
ATY48_16080	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY48_16095	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY48_16230	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY48_16230	PWY-5491	diethylphosphate degradation
ATY48_16340	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_16340	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY48_16340	PWY-7761	ATY48_16340
ATY48_16545	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY48_16545	PWY-6892	thiazole biosynthesis I (E. coli)
ATY48_16665	PWY-5278	sulfite oxidation III
ATY48_16665	PWY-5340	sulfate activation for sulfonation
ATY48_16665	PWY-6683	sulfate reduction III (assimilatory)
ATY48_16665	PWY-6932	selenate reduction
ATY48_16670	PWY-5278	sulfite oxidation III
ATY48_16670	PWY-5340	sulfate activation for sulfonation
ATY48_16670	PWY-6683	sulfate reduction III (assimilatory)
ATY48_16670	PWY-6932	selenate reduction
ATY48_16675	PWY-6683	sulfate reduction III (assimilatory)
ATY48_16680	PWY-6683	sulfate reduction III (assimilatory)
ATY48_16720	PWY-5194	siroheme biosynthesis
ATY48_16720	PWY-5196	factor 430 biosynthesis
ATY48_16720	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY48_16725	PWY-6936	seleno-amino acid biosynthesis
ATY48_16735	PWY-6825	phosphatidylcholine biosynthesis V
ATY48_16745	PWY-1042	glycolysis IV (plant cytosol)
ATY48_16745	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_16745	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_16745	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_16745	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY48_16750	PWY-1042	glycolysis IV (plant cytosol)
ATY48_16750	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY48_16750	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_16750	PWY-5723	Rubisco shunt
ATY48_16750	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_16750	PWY-6886	1-butanol autotrophic biosynthesis
ATY48_16750	PWY-6901	superpathway of glucose and xylose degradation
ATY48_16750	PWY-7003	glycerol degradation to butanol
ATY48_16750	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY48_16750	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY48_16760	PWY-1042	glycolysis IV (plant cytosol)
ATY48_16760	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY48_16760	PWY-6886	1-butanol autotrophic biosynthesis
ATY48_16760	PWY-6901	superpathway of glucose and xylose degradation
ATY48_16760	PWY-7003	glycerol degradation to butanol
ATY48_17775	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
ATY48_17795	PWY-7560	methylerythritol phosphate pathway II
ATY48_17810	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_17820	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
ATY48_17855	PWY-7731	ATY48_17855
ATY48_17885	PWY-5057	L-valine degradation II
ATY48_17885	PWY-5076	L-leucine degradation III
ATY48_17885	PWY-5078	L-isoleucine degradation II
ATY48_17885	PWY-5101	L-isoleucine biosynthesis II
ATY48_17885	PWY-5103	L-isoleucine biosynthesis III
ATY48_17885	PWY-5104	L-isoleucine biosynthesis IV
ATY48_17885	PWY-5108	L-isoleucine biosynthesis V
ATY48_17885	PWY-7767	ATY48_17885
ATY48_18025	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_18025	PWY-5723	Rubisco shunt
ATY48_18050	PWY-2582	brassinosteroid biosynthesis II
ATY48_18050	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY48_18050	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY48_18050	PWY-6948	sitosterol degradation to androstenedione
ATY48_18050	PWY-699	brassinosteroid biosynthesis I
ATY48_18050	PWY-7299	progesterone biosynthesis
ATY48_18135	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY48_18135	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY48_18135	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY48_18135	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY48_18150	PWY-2161	folate polyglutamylation
ATY48_18165	PWY-7782	ATY48_18165
ATY48_18165	PWY-7783	ATY48_18165
ATY48_18175	PWY-7378	aminopropanol phosphate biosynthesis II
ATY48_18365	PWY-5530	sorbitol biosynthesis II
ATY48_18500	PWY-3841	folate transformations II
ATY48_18500	PWY-6614	tetrahydrofolate biosynthesis
ATY48_18510	PWY-3841	folate transformations II
ATY48_18510	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY48_18510	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY48_18510	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY48_18510	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY48_18510	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY48_18535	PWY-7039	phosphatidate metabolism, as a signaling molecule
ATY48_18535	PWY-7817	ATY48_18535
ATY48_18650	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY48_18650	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
ATY48_18690	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY48_18690	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY48_18690	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_18690	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY48_18690	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
ATY48_18690	PWY-6549	L-glutamine biosynthesis III
ATY48_18690	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY48_18690	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY48_18690	PWY-7124	ethylene biosynthesis V (engineered)
ATY48_18700	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY48_18765	PWY-2201	folate transformations I
ATY48_18765	PWY-3841	folate transformations II
ATY48_18780	PWY-6502	oxidized GTP and dGTP detoxification
ATY48_18780	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY48_18780	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY48_18780	PWY-6897	thiamin salvage II
ATY48_18780	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY48_18780	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY48_18780	PWY-7356	thiamin salvage IV (yeast)
ATY48_18780	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY48_18825	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_18825	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_18825	PWY-7953	ATY48_18825
ATY48_18830	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_18830	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_18830	PWY-7953	ATY48_18830
ATY48_18835	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_18835	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_18835	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_18835	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_18840	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_18840	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_18840	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_18840	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_18845	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_18845	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_18845	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_18850	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY48_18850	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY48_18850	PWY-7953	ATY48_18850
ATY48_18860	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_18860	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_18960	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY48_18960	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY48_18960	PWY-6896	thiamin salvage I
ATY48_18960	PWY-6897	thiamin salvage II
ATY48_18970	PWY-6167	flavin biosynthesis II (archaea)
ATY48_18970	PWY-6168	flavin biosynthesis III (fungi)
ATY48_18975	PWY-6167	flavin biosynthesis II (archaea)
ATY48_18975	PWY-6168	flavin biosynthesis III (fungi)
ATY48_18975	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY48_18975	PWY-7991	ATY48_18975
ATY48_18980	PWY-6167	flavin biosynthesis II (archaea)
ATY48_18980	PWY-6168	flavin biosynthesis III (fungi)
ATY48_18980	PWY-7980	ATY48_18980
ATY48_18990	PWY-7991	ATY48_18990
ATY48_19010	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY48_19010	PWY-181	photorespiration
ATY48_19010	PWY-2161	folate polyglutamylation
ATY48_19010	PWY-2201	folate transformations I
ATY48_19010	PWY-3661	glycine betaine degradation I
ATY48_19010	PWY-3661-1	glycine betaine degradation II (mammalian)
ATY48_19010	PWY-3841	folate transformations II
ATY48_19010	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY48_19050	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY48_19060	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY48_19060	PWY-3162	L-tryptophan degradation V (side chain pathway)
ATY48_19060	PWY-5057	L-valine degradation II
ATY48_19060	PWY-5076	L-leucine degradation III
ATY48_19060	PWY-5078	L-isoleucine degradation II
ATY48_19060	PWY-5079	L-phenylalanine degradation III
ATY48_19060	PWY-5082	L-methionine degradation III
ATY48_19060	PWY-5480	pyruvate fermentation to ethanol I
ATY48_19060	PWY-5486	pyruvate fermentation to ethanol II
ATY48_19060	PWY-5751	phenylethanol biosynthesis
ATY48_19060	PWY-6313	serotonin degradation
ATY48_19060	PWY-6333	acetaldehyde biosynthesis I
ATY48_19060	PWY-6342	noradrenaline and adrenaline degradation
ATY48_19060	PWY-6587	pyruvate fermentation to ethanol III
ATY48_19060	PWY-6802	salidroside biosynthesis
ATY48_19060	PWY-6871	3-methylbutanol biosynthesis
ATY48_19060	PWY-7013	L-1,2-propanediol degradation
ATY48_19060	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY48_19060	PWY-7118	chitin degradation to ethanol
ATY48_19060	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY48_19060	PWY-7798	ATY48_19060
ATY48_19115	PWY-6840	homoglutathione biosynthesis
ATY48_19115	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY48_19285	PWY-6906	chitin derivatives degradation
ATY48_19285	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
ATY48_19285	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
ATY48_19320	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_19355	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY48_19355	PWY-6148	tetrahydromethanopterin biosynthesis
ATY48_19355	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY48_19355	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY48_19355	PWY-7852	ATY48_19355
ATY48_19355	PWY-7853	ATY48_19355
ATY48_19420	PWY-5381	pyridine nucleotide cycling (plants)
ATY48_19460	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY48_19460	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY48_19465	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY48_19465	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY48_19480	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_19480	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_19530	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_19530	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY48_19530	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY48_19530	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_19535	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY48_19535	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY48_19600	PWY-5839	menaquinol-7 biosynthesis
ATY48_19600	PWY-5844	menaquinol-9 biosynthesis
ATY48_19600	PWY-5849	menaquinol-6 biosynthesis
ATY48_19600	PWY-5890	menaquinol-10 biosynthesis
ATY48_19600	PWY-5891	menaquinol-11 biosynthesis
ATY48_19600	PWY-5892	menaquinol-12 biosynthesis
ATY48_19600	PWY-5895	menaquinol-13 biosynthesis
ATY48_19645	PWY-2941	L-lysine biosynthesis II
ATY48_19645	PWY-5097	L-lysine biosynthesis VI
ATY48_19700	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_19700	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY48_19860	PWY-7892	ATY48_19860
ATY48_19940	PWY-5958	acridone alkaloid biosynthesis
ATY48_19940	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY48_19940	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY48_19955	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY48_19955	PWY-5723	Rubisco shunt
ATY48_20135	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY48_20135	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY48_20195	PWY-6454	vancomycin resistance I
ATY48_20195	PWY-6455	vancomycin resistance II
ATY48_20325	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY48_20325	PWY-6148	tetrahydromethanopterin biosynthesis
ATY48_20325	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY48_20325	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY48_20415	PWY-3781	aerobic respiration I (cytochrome c)
ATY48_20415	PWY-4521	arsenite oxidation I (respiratory)
ATY48_20415	PWY-6692	Fe(II) oxidation
ATY48_20415	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY48_20430	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
ATY48_20430	PWY-6853	ethylene biosynthesis II (microbes)
ATY48_20430	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY48_20495	PWY-6834	spermidine biosynthesis III
ATY48_20530	PWY-5958	acridone alkaloid biosynthesis
ATY48_20530	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY48_20530	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY48_20555	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY48_20555	PWY-6549	L-glutamine biosynthesis III
ATY48_20555	PWY-6728	methylaspartate cycle
ATY48_20555	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY48_20555	PWY-7124	ethylene biosynthesis V (engineered)
ATY48_20555	PWY-7254	TCA cycle VII (acetate-producers)
ATY48_20555	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY48_20620	PWY-6700	queuosine biosynthesis
ATY48_20690	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY48_20690	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY48_20690	PWY-7902	ATY48_20690
ATY48_20745	PWY-4381	fatty acid biosynthesis initiation I
ATY48_20840	PWY-5101	L-isoleucine biosynthesis II
ATY48_20840	PWY-5103	L-isoleucine biosynthesis III
ATY48_20840	PWY-5104	L-isoleucine biosynthesis IV
ATY48_20840	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY48_20875	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY48_20905	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY48_20905	PWY-6892	thiazole biosynthesis I (E. coli)
ATY48_20905	PWY-7560	methylerythritol phosphate pathway II
ATY48_21080	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY48_21080	PWY-6164	3-dehydroquinate biosynthesis I
ATY48_21080	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY48_21180	PWY-7980	ATY48_21180
ATY48_21235	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY48_21235	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY48_21235	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY48_21235	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY48_21235	PWY-6113	superpathway of mycolate biosynthesis
ATY48_21235	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY48_21235	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY48_21235	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY48_21235	PWY-7663	gondoate biosynthesis (anaerobic)
ATY48_21235	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY48_21235	PWY-7858	ATY48_21235
ATY48_21235	PWYG-321	mycolate biosynthesis
ATY48_21240	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY48_21240	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY48_21240	PWY-6453	stigma estolide biosynthesis
ATY48_21240	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY48_21240	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY48_21240	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY48_21240	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
ATY48_21240	PWY-7782	ATY48_21240
ATY48_21300	PWY-6825	phosphatidylcholine biosynthesis V
ATY48_21325	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY48_21325	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ATY48_21325	PWY-6936	seleno-amino acid biosynthesis
ATY48_21325	PWY-702	L-methionine biosynthesis II
ATY48_21345	PWY-6700	queuosine biosynthesis
ATY48_21350	PWY-2201	folate transformations I
ATY48_21350	PWY-3841	folate transformations II
ATY48_21370	PWY-2201	folate transformations I
ATY48_21370	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY48_21370	PWY-7909	ATY48_21370
ATY48_21465	PWY-6832	2-aminoethylphosphonate degradation II
ATY48_21480	PWY-5691	urate degradation to allantoin I
ATY48_21480	PWY-7394	urate degradation to allantoin II
ATY48_21480	PWY-7849	ATY48_21480
ATY48_21535	PWY-4381	fatty acid biosynthesis initiation I
ATY48_21535	PWY-5743	3-hydroxypropanoate cycle
ATY48_21535	PWY-5744	glyoxylate assimilation
ATY48_21535	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY48_21535	PWY-6722	candicidin biosynthesis
ATY48_21745	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY48_21765	PWY-6531	mannitol cycle
ATY48_21785	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
ATY48_21785	PWY-7248	pectin degradation III
ATY48_21790	PWY-6717	(1,4)-&beta;-xylan degradation
ATY48_21790	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY48_21795	PWY-6717	(1,4)-&beta;-xylan degradation
ATY48_21795	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY48_22060	PWY-6854	ethylene biosynthesis III (microbes)
ATY48_22065	PWY-6854	ethylene biosynthesis III (microbes)
ATY48_22090	PWY-381	nitrate reduction II (assimilatory)
ATY48_22090	PWY-5675	nitrate reduction V (assimilatory)
ATY48_22090	PWY-6549	L-glutamine biosynthesis III
ATY48_22090	PWY-6963	ammonia assimilation cycle I
ATY48_22090	PWY-6964	ammonia assimilation cycle II
ATY48_22095	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
ATY48_22185	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY48_22185	PWY-7550	ergothioneine biosynthesis II (fungi)
ATY48_22190	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY48_22370	PWY-5108	L-isoleucine biosynthesis V
ATY48_22370	PWY-5132	humulone biosynthesis
ATY48_22370	PWY-5133	cohumulone biosynthesis
ATY48_22370	PWY-6672	<i>cis</i>-genanyl-CoA degradation
ATY48_22370	PWY-7118	chitin degradation to ethanol
ATY48_22370	PWY-7857	ATY48_22370
ATY48_22405	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY48_22415	PWY-6012	acyl carrier protein metabolism I
ATY48_22415	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY48_22415	PWY-6289	petrobactin biosynthesis
ATY48_22470	PWY-7701	ATY48_22470
ATY48_22650	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY48_22650	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY48_22650	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY48_22650	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY48_22650	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY48_22650	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY48_22650	PWY-7852	ATY48_22650
ATY48_22795	PWY-6348	phosphate acquisition
