locus-tag	class	description
ATY49_00020	COG0187	DNA topoisomerase II activity
ATY49_00030	COG0501	Belongs to the peptidase M48B family
ATY49_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY49_00090	COG4772	TonB-dependent receptor
ATY49_00100	COG3039	Transposase
ATY49_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY49_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY49_00145	COG3039	Transposase
ATY49_00155	COG1116	anion transmembrane transporter activity
ATY49_00175	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY49_00195	COG3039	Transposase
ATY49_00205	COG0513	Belongs to the DEAD box helicase family
ATY49_00240	COG3039	Transposase
ATY49_00295	COG1858	cytochrome C peroxidase
ATY49_00300	COG0702	epimerase
ATY49_00325	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY49_00340	COG3706	GGDEF domain
ATY49_00340	COG0745	RESPONSE REGULATOR receiver
ATY49_00350	COG2354	Protein conserved in bacteria
ATY49_00355	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY49_00365	COG3293	Transposase
ATY49_00375	COG3264	Mechanosensitive ion channel
ATY49_00375	COG1511	domain protein
ATY49_00455	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY49_00555	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY49_00565	COG0642	Histidine kinase
ATY49_00570	COG1090	epimerase
ATY49_00580	COG3039	Transposase
ATY49_00605	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_00650	COG1136	(ABC) transporter
ATY49_00665	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_00690	COG1272	protein, Hemolysin III
ATY49_00695	COG1205	dead DEAH box helicase
ATY49_00695	COG1111	helicase
ATY49_00750	COG0070	glutamate synthase
ATY49_00750	COG0069	glutamate synthase activity
ATY49_00750	COG0067	glutamate synthase
ATY49_00755	COG0493	'glutamate synthase
ATY49_00775	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_00795	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY49_00800	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY49_00805	COG1609	Transcriptional regulator
ATY49_00830	COG0366	Alpha amylase catalytic
ATY49_00835	COG0366	Alpha amylase catalytic
ATY49_00840	COG2801	Transposase and inactivated derivatives
ATY49_00855	COG3328	transposase activity
ATY49_00885	COG0606	chelatase, subunit chli
ATY49_00920	COG1166	arginine decarboxylase activity
ATY49_01010	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_01035	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY49_01050	COG0210	DNA helicase
ATY49_01070	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY49_01105	COG2937	Belongs to the GPAT DAPAT family
ATY49_01125	COG2963	transposase activity
ATY49_01140	COG2755	lipolytic protein G-D-S-L family
ATY49_01150	COG3186	Phenylalanine-4-hydroxylase
ATY49_01155	COG1522	sequence-specific DNA binding
ATY49_01170	COG4773	Receptor
ATY49_01210	COG1064	alcohol dehydrogenase
ATY49_01215	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY49_01220	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY49_01225	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY49_01230	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_01250	COG3039	Transposase
ATY49_01255	COG0676	glucose-6-phosphate 1-epimerase activity
ATY49_01275	COG3135	benzoate transporter
ATY49_01280	COG3135	benzoate transporter
ATY49_01310	COG2801	Transposase and inactivated derivatives
ATY49_01315	COG2963	transposase activity
ATY49_01355	COG3293	Transposase
ATY49_01375	COG2853	Lipoprotein
ATY49_01390	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY49_01395	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY49_01400	COG1127	ABC transporter
ATY49_01430	COG3293	Transposase
ATY49_01460	COG2801	Transposase and inactivated derivatives
ATY49_01465	COG2963	transposase activity
ATY49_01485	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY49_01490	COG3293	Transposase
ATY49_01500	COG3265	gluconokinase activity
ATY49_01505	COG2211	Major facilitator Superfamily
ATY49_01510	COG3459	Glycosyltransferase 36 associated
ATY49_01525	COG2205	protein histidine kinase activity
ATY49_01535	COG1414	Transcriptional regulator
ATY49_01540	COG0738	Major facilitator superfamily
ATY49_01545	COG3254	rhamnose metabolic process
ATY49_01570	COG0339	signal peptide processing
ATY49_01595	COG0564	pseudouridine synthase activity
ATY49_01650	COG3293	Transposase
ATY49_01655	COG2963	transposase activity
ATY49_01700	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY49_01710	COG0842	Transport permease protein
ATY49_01715	COG1131	(ABC) transporter
ATY49_01720	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY49_01740	COG1476	TRANSCRIPTIONal
ATY49_01750	COG4555	ABC transporter
ATY49_01785	COG0625	glutathione transferase activity
ATY49_01820	COG0583	DNA-binding transcription factor activity
ATY49_01850	COG1199	ATP-dependent helicase activity
ATY49_01870	COG1566	PFAM secretion protein HlyD family protein
ATY49_01895	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY49_01905	COG0745	RESPONSE REGULATOR receiver
ATY49_01910	COG2205	protein histidine kinase activity
ATY49_01935	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY49_01935	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY49_01990	COG3237	CsbD-like
ATY49_01995	COG0180	Tryptophanyl-tRNA synthetase
ATY49_02000	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY49_02045	COG0753	catalase activity
ATY49_02050	COG1595	DNA-templated transcription, initiation
ATY49_02060	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY49_02070	COG0628	permease
ATY49_02085	COG1040	competence protein
ATY49_02105	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_02120	COG0463	Glycosyl transferase, family 2
ATY49_02130	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY49_02135	COG3100	YcgL domain-containing protein
ATY49_02150	COG3387	PFAM Glycoside hydrolase 15-related
ATY49_02155	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY49_02170	COG2239	Acts as a magnesium transporter
ATY49_02180	COG1042	CoA-binding domain protein
ATY49_02180	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY49_02180	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY49_02190	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY49_02195	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY49_02215	COG2963	transposase activity
ATY49_02235	COG3485	protocatechuate 3,4-dioxygenase
ATY49_02240	COG3485	protocatechuate 3,4-dioxygenase
ATY49_02245	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY49_02250	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY49_02255	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY49_02265	COG1414	Transcriptional regulator
ATY49_02275	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_02280	COG4221	oxidoreductase activity
ATY49_02295	COG0018	arginyl-trna synthetase
ATY49_02300	COG2003	Belongs to the UPF0758 family
ATY49_02305	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY49_02330	COG0463	Glycosyl transferase, family 2
ATY49_02345	COG1475	DNA binding
ATY49_02350	COG1192	Involved in chromosome partitioning
ATY49_02365	COG0708	Exodeoxyribonuclease III
ATY49_02370	COG2211	Major facilitator Superfamily
ATY49_02385	COG0739	heme binding
ATY49_02425	COG2963	transposase activity
ATY49_02460	COG3293	Transposase
ATY49_02485	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY49_02505	COG2814	Major facilitator Superfamily
ATY49_02520	COG1289	transmembrane transporter activity
ATY49_02530	COG0577	efflux transmembrane transporter activity
ATY49_02530	COG1136	(ABC) transporter
ATY49_02535	COG0151	Belongs to the GarS family
ATY49_02555	COG2267	carboxylic ester hydrolase activity
ATY49_02565	COG2267	carboxylic ester hydrolase activity
ATY49_02570	COG0671	phosphoesterase, PA-phosphatase related
ATY49_02570	COG2453	phosphatase
ATY49_02580	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY49_02615	COG0439	Biotin carboxylase
ATY49_02625	COG0511	ligase activity, forming carbon-carbon bonds
ATY49_02645	COG1324	tolerance protein
ATY49_02665	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY49_02685	COG0534	Mate efflux family protein
ATY49_02690	COG0616	signal peptide processing
ATY49_02700	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_02720	COG1754	DNA topoisomerase type I activity
ATY49_02720	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY49_02740	COG0758	DNA mediated transformation
ATY49_02745	COG1652	LysM domain
ATY49_02750	COG0242	peptide deformylase activity
ATY49_02760	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY49_02760	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY49_02805	COG1560	Kdo2-lipid A biosynthetic process
ATY49_02815	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY49_03025	COG1294	oxidase, subunit
ATY49_03030	COG1271	oxidase subunit
ATY49_03035	COG2204	response regulator
ATY49_03065	COG2972	Histidine kinase
ATY49_03070	COG3279	Response regulator of the LytR AlgR family
ATY49_03075	COG3279	Response regulator of the LytR AlgR family
ATY49_03085	COG0531	amino acid
ATY49_03100	COG3590	peptidase
ATY49_03115	COG0667	Aldo Keto reductase
ATY49_03130	COG3384	dioxygenase
ATY49_03140	COG1573	uracil-dna glycosylase
ATY49_03145	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY49_03160	COG0025	NhaP-type Na H and K H
ATY49_03165	COG1131	(ABC) transporter
ATY49_03170	COG0842	Transport permease protein
ATY49_03190	COG1404	Belongs to the peptidase S8 family
ATY49_03205	COG0745	RESPONSE REGULATOR receiver
ATY49_03245	COG1522	sequence-specific DNA binding
ATY49_03250	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY49_03275	COG2202	Pas domain
ATY49_03275	COG2205	protein histidine kinase activity
ATY49_03300	COG2813	Specifically methylates the guanine in position
ATY49_03305	COG1187	pseudouridine synthase activity
ATY49_03310	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY49_03345	COG0697	spore germination
ATY49_03355	COG2011	ABC-type metal ion transport system permease component
ATY49_03385	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY49_03395	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY49_03415	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY49_03450	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ATY49_03500	COG3842	ATPase activity
ATY49_03505	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY49_03510	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY49_03525	COG3293	Transposase
ATY49_03565	COG0339	signal peptide processing
ATY49_03600	COG1956	GAF domain-containing protein
ATY49_03615	COG0720	synthase
ATY49_03625	COG0513	Belongs to the DEAD box helicase family
ATY49_03665	COG0626	cystathionine gamma-synthase activity
ATY49_03705	COG3328	transposase activity
ATY49_03730	COG2086	electron transfer activity
ATY49_03755	COG0662	Cupin 2, conserved barrel domain protein
ATY49_03755	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY49_03760	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY49_03795	COG3218	ABC-type transport auxiliary lipoprotein component
ATY49_03795	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY49_03800	COG1127	ABC transporter
ATY49_03805	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY49_03830	COG1183	phosphatidylcholine synthase activity
ATY49_03855	COG3039	Transposase
ATY49_03895	COG2801	Transposase and inactivated derivatives
ATY49_03900	COG2963	transposase activity
ATY49_03910	COG0525	valine-tRNA ligase activity
ATY49_03935	COG0795	lipopolysaccharide-transporting ATPase activity
ATY49_03945	COG4974	Belongs to the 'phage' integrase family
ATY49_03950	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY49_03955	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY49_03955	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY49_03960	COG5295	Hep Hag repeat protein
ATY49_03980	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY49_03990	COG1459	type II secretion system
ATY49_03995	COG2165	general secretion pathway protein
ATY49_04000	COG4970	Tfp pilus assembly protein FimT
ATY49_04005	COG2165	general secretion pathway protein
ATY49_04010	COG4795	General secretion pathway protein
ATY49_04015	COG3156	type II secretion system protein K
ATY49_04020	COG3166	PFAM Fimbrial assembly family protein
ATY49_04035	COG1450	Type ii and iii secretion system protein
ATY49_04045	COG2188	Transcriptional regulator
ATY49_04080	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY49_04085	COG1518	maintenance of DNA repeat elements
ATY49_04125	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY49_04150	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_04165	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY49_04170	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY49_04195	COG3829	transcription factor binding
ATY49_04220	COG3039	Transposase
ATY49_04260	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_04270	COG0678	peroxiredoxin activity
ATY49_04290	COG0330	HflC and HflK could
ATY49_04295	COG0330	HflC and HflK could
ATY49_04310	COG0308	aminopeptidase N
ATY49_04335	COG3039	Transposase
ATY49_04355	COG1560	Kdo2-lipid A biosynthetic process
ATY49_04360	COG1519	Transferase
ATY49_04365	COG1538	Outer membrane efflux protein
ATY49_04370	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY49_04450	COG3710	Transcriptional regulator
ATY49_04470	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY49_04510	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY49_04520	COG3781	membrane
ATY49_04535	COG0625	glutathione transferase activity
ATY49_04545	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY49_04570	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY49_04590	COG2963	transposase activity
ATY49_04595	COG2801	Transposase and inactivated derivatives
ATY49_04640	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_04670	COG2963	transposase activity
ATY49_04700	COG3293	Transposase
ATY49_04720	COG3039	Transposase
ATY49_04740	COG3293	Transposase
ATY49_04745	COG0584	glycerophosphoryl diester phosphodiesterase
ATY49_04775	COG0473	3-isopropylmalate dehydrogenase activity
ATY49_04805	COG2963	transposase activity
ATY49_04830	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY49_04835	COG0740	serine-type endopeptidase activity
ATY49_04870	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY49_04895	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY49_04900	COG0631	protein serine/threonine phosphatase activity
ATY49_04925	COG3501	Rhs element vgr protein
ATY49_04965	COG0582	viral genome integration into host DNA
ATY49_04975	COG0859	PFAM glycosyl transferase family 9
ATY49_04985	COG1234	tRNA 3'-trailer cleavage
ATY49_04990	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY49_05005	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY49_05010	COG0314	molybdopterin synthase activity
ATY49_05100	COG0537	adenosine 5'-monophosphoramidase activity
ATY49_05120	COG0714	Associated with various cellular activities
ATY49_05140	COG0242	peptide deformylase activity
ATY49_05175	COG3039	Transposase
ATY49_05195	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY49_05200	COG0726	polysaccharide deacetylase
ATY49_05245	COG2211	Major facilitator Superfamily
ATY49_05250	COG1609	Transcriptional regulator
ATY49_05255	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_05260	COG2851	Citrate transporter
ATY49_05275	COG0642	Histidine kinase
ATY49_05280	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY49_05285	COG2197	response regulator
ATY49_05300	COG0583	DNA-binding transcription factor activity
ATY49_05315	COG4191	Histidine kinase
ATY49_05330	COG0281	malic enzyme
ATY49_05330	COG0280	phosphate acetyltransferase
ATY49_05340	COG2963	transposase activity
ATY49_05345	COG2801	Transposase and inactivated derivatives
ATY49_05365	COG0352	thiamine-phosphate diphosphorylase activity
ATY49_05370	COG1773	rubredoxin
ATY49_05375	COG2912	Transglutaminase-like superfamily
ATY49_05395	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY49_05415	COG0006	proline dipeptidase activity
ATY49_05430	COG3293	Transposase
ATY49_05450	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY49_05470	COG1561	YicC-like family, N-terminal region
ATY49_05490	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY49_05500	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY49_05510	COG0254	rRNA binding
ATY49_05530	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY49_05575	COG0714	Associated with various cellular activities
ATY49_05595	COG2304	oxidoreductase activity
ATY49_05610	COG1301	dicarboxylic acid transport
ATY49_05615	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY49_05620	COG4773	Receptor
ATY49_05625	COG0739	heme binding
ATY49_05630	COG1376	ErfK ybiS ycfS ynhG family protein
ATY49_05655	COG1022	Amp-dependent synthetase and ligase
ATY49_05665	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_05675	COG0745	RESPONSE REGULATOR receiver
ATY49_05680	COG0642	Histidine kinase
ATY49_05700	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY49_05705	COG4149	molybdate abc transporter
ATY49_05710	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY49_05715	COG3453	Protein conserved in bacteria
ATY49_05715	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY49_05750	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY49_05755	COG3293	Transposase
ATY49_05770	COG2205	protein histidine kinase activity
ATY49_05775	COG0745	RESPONSE REGULATOR receiver
ATY49_05790	COG3039	Transposase
ATY49_05825	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY49_05830	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY49_05865	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY49_05885	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY49_05965	COG3293	Transposase
ATY49_05980	COG3039	Transposase
ATY49_05990	COG3293	Transposase
ATY49_06100	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY49_06100	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY49_06150	COG0124	histidyl-tRNA synthetase
ATY49_06165	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY49_06200	COG1012	belongs to the aldehyde dehydrogenase family
ATY49_06220	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ATY49_06225	COG0697	spore germination
ATY49_06230	COG1794	racemase activity, acting on amino acids and derivatives
ATY49_06250	COG0671	phosphoesterase, PA-phosphatase related
ATY49_06265	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY49_06275	COG2183	response to ionizing radiation
ATY49_06285	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY49_06285	COG0723	plastoquinol--plastocyanin reductase activity
ATY49_06300	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY49_06310	COG1183	phosphatidylcholine synthase activity
ATY49_06315	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_06355	COG0668	transmembrane transport
ATY49_06365	COG0590	tRNA wobble adenosine to inosine editing
ATY49_06370	COG1321	iron dependent repressor
ATY49_06375	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY49_06390	COG0583	DNA-binding transcription factor activity
ATY49_06410	COG0583	DNA-binding transcription factor activity
ATY49_06415	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY49_06470	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY49_06470	COG0475	glutathione-regulated potassium exporter activity
ATY49_06475	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY49_06485	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY49_06490	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY49_06505	COG0539	negative regulation of cytoplasmic translation
ATY49_06515	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY49_06525	COG2957	Belongs to the agmatine deiminase family
ATY49_06530	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY49_06550	COG0395	ABC-type sugar transport system, permease component
ATY49_06555	COG1175	transmembrane transport
ATY49_06585	COG2350	Protein conserved in bacteria
ATY49_06590	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY49_06595	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY49_06600	COG1187	pseudouridine synthase activity
ATY49_06625	COG0436	Aminotransferase
ATY49_06690	COG0277	FAD linked oxidase domain protein
ATY49_06695	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY49_06705	COG0531	amino acid
ATY49_06710	COG0531	amino acid
ATY49_06795	COG0583	DNA-binding transcription factor activity
ATY49_06805	COG3039	Transposase
ATY49_06840	COG2963	transposase activity
ATY49_06845	COG2801	Transposase and inactivated derivatives
ATY49_06860	COG3039	Transposase
ATY49_06900	COG3039	Transposase
ATY49_06905	COG3039	Transposase
ATY49_06920	COG1278	Cold shock
ATY49_06930	COG3328	transposase activity
ATY49_06945	COG3039	Transposase
ATY49_06955	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY49_06975	COG0557	exoribonuclease II activity
ATY49_06995	COG1960	acyl-CoA dehydrogenase activity
ATY49_07005	COG0646	methionine synthase
ATY49_07005	COG1410	methionine synthase
ATY49_07010	COG1410	methionine synthase
ATY49_07010	COG0646	methionine synthase
ATY49_07020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY49_07060	COG0386	Belongs to the glutathione peroxidase family
ATY49_07070	COG1725	Transcriptional regulator
ATY49_07075	COG1131	(ABC) transporter
ATY49_07115	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_07125	COG3293	Transposase
ATY49_07160	COG2850	peptidyl-arginine hydroxylation
ATY49_07195	COG1132	(ABC) transporter
ATY49_07200	COG0583	DNA-binding transcription factor activity
ATY49_07215	COG1605	Chorismate mutase
ATY49_07215	COG0287	Prephenate dehydrogenase
ATY49_07220	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY49_07245	COG0497	DNA recombination
ATY49_07255	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY49_07260	COG2914	Belongs to the UPF0125 (RnfH) family
ATY49_07290	COG1960	acyl-CoA dehydrogenase activity
ATY49_07320	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_07355	COG2814	Major facilitator Superfamily
ATY49_07360	COG1566	PFAM secretion protein HlyD family protein
ATY49_07395	COG4774	siderophore transport
ATY49_07410	COG0367	asparagine synthase
ATY49_07425	COG1393	Belongs to the ArsC family
ATY49_07445	COG0024	Methionine aminopeptidase
ATY49_07510	COG0575	Belongs to the CDS family
ATY49_07520	COG0750	zinc metalloprotease
ATY49_07570	COG4771	TonB-dependent receptor
ATY49_07575	COG1131	(ABC) transporter
ATY49_07660	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY49_07670	COG2040	homocysteine
ATY49_07675	COG0833	amino acid
ATY49_07705	COG2878	Part of a membrane complex involved in electron transport
ATY49_07725	COG1595	DNA-templated transcription, initiation
ATY49_07750	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY49_07765	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY49_07770	COG0251	oxidation-reduction process
ATY49_07780	COG0392	lysyltransferase activity
ATY49_07780	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY49_07830	COG2814	Major facilitator Superfamily
ATY49_07835	COG1902	pentaerythritol trinitrate reductase activity
ATY49_07845	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY49_07860	COG1047	Peptidyl-prolyl cis-trans
ATY49_07890	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY49_07900	COG1451	nucleotide metabolic process
ATY49_07915	COG0183	Belongs to the thiolase family
ATY49_07930	COG3706	GGDEF domain
ATY49_07930	COG0745	RESPONSE REGULATOR receiver
ATY49_07945	COG1793	dna ligase
ATY49_07945	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY49_07955	COG1793	dna ligase
ATY49_07960	COG1201	RNA secondary structure unwinding
ATY49_07985	COG1278	Cold shock
ATY49_07990	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY49_08005	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY49_08010	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY49_08015	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY49_08075	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY49_08090	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY49_08090	COG1024	Enoyl-CoA hydratase
ATY49_08110	COG1024	Enoyl-CoA hydratase
ATY49_08115	COG1960	acyl-CoA dehydrogenase activity
ATY49_08140	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY49_08190	COG2353	YceI-like domain
ATY49_08200	COG2353	YceI-like domain
ATY49_08210	COG1760	l-serine dehydratase
ATY49_08220	COG0626	cystathionine gamma-synthase activity
ATY49_08225	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY49_08230	COG0739	heme binding
ATY49_08240	COG1272	protein, Hemolysin III
ATY49_08250	COG0516	GMP reductase activity
ATY49_08250	COG0517	IMP dehydrogenase activity
ATY49_08255	COG0463	Glycosyl transferase, family 2
ATY49_08265	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY49_08275	COG4771	TonB-dependent receptor
ATY49_08280	COG1309	transcriptional regulator
ATY49_08290	COG1960	acyl-CoA dehydrogenase activity
ATY49_08330	COG0330	HflC and HflK could
ATY49_08340	COG3956	TIGRFAM MazG family protein
ATY49_08350	COG0494	nUDIX hydrolase
ATY49_08360	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY49_08365	COG0837	glucose binding
ATY49_08380	COG3858	chitin binding
ATY49_08380	COG1388	LysM domain
ATY49_08385	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY49_08395	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY49_08455	COG3537	Alpha-1,2-mannosidase
ATY49_08505	COG3142	Participates in the control of copper homeostasis
ATY49_08510	COG1446	asparaginase
ATY49_08525	COG2304	oxidoreductase activity
ATY49_08560	COG0840	transmembrane signaling receptor activity
ATY49_08565	COG0835	chemotaxis
ATY49_08580	COG0189	ligase activity
ATY49_08590	COG1397	ADP-ribosylglycohydrolase
ATY49_08600	COG1199	ATP-dependent helicase activity
ATY49_08610	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY49_08625	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY49_08660	COG3293	Transposase
ATY49_08670	COG0837	glucose binding
ATY49_08675	COG0837	glucose binding
ATY49_08680	COG0837	glucose binding
ATY49_08690	COG1643	Atp-dependent helicase
ATY49_08695	COG0783	Belongs to the Dps family
ATY49_08700	COG0514	ATP-dependent DNA helicase (RecQ)
ATY49_08730	COG3293	Transposase
ATY49_08775	COG1187	pseudouridine synthase activity
ATY49_08780	COG0602	queuosine metabolic process
ATY49_08790	COG2885	chlorophyll binding
ATY49_08805	COG0848	biopolymer transport protein
ATY49_08815	COG0824	Thioesterase
ATY49_08895	COG2963	transposase activity
ATY49_08915	COG2963	transposase activity
ATY49_08920	COG2801	Transposase and inactivated derivatives
ATY49_08950	COG2963	transposase activity
ATY49_08975	COG3501	Rhs element vgr protein
ATY49_08985	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY49_08990	COG1845	cytochrome c oxidase, subunit III
ATY49_08995	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY49_09025	COG0196	riboflavin kinase activity
ATY49_09035	COG3293	Transposase
ATY49_09040	COG0728	peptidoglycan biosynthetic process
ATY49_09045	COG0268	Binds directly to 16S ribosomal RNA
ATY49_09065	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY49_09070	COG0824	Thioesterase
ATY49_09085	COG1946	Acyl-CoA thioesterase
ATY49_09095	COG1595	DNA-templated transcription, initiation
ATY49_09155	COG1877	trehalose-phosphatase activity
ATY49_09160	COG3387	PFAM Glycoside hydrolase 15-related
ATY49_09185	COG0564	pseudouridine synthase activity
ATY49_09190	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY49_09195	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY49_09195	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY49_09205	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY49_09225	COG2184	nucleotidyltransferase activity
ATY49_09245	COG2194	sulfuric ester hydrolase activity
ATY49_09250	COG4969	Belongs to the N-Me-Phe pilin family
ATY49_09260	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY49_09285	COG3039	Transposase
ATY49_09295	COG3039	Transposase
ATY49_09310	COG3039	Transposase
ATY49_09320	COG3293	Transposase
ATY49_09330	COG1132	(ABC) transporter
ATY49_09360	COG0745	RESPONSE REGULATOR receiver
ATY49_09365	COG5002	protein histidine kinase activity
ATY49_09365	COG5000	phosphorelay sensor kinase activity
ATY49_09370	COG0475	glutathione-regulated potassium exporter activity
ATY49_09395	COG1187	pseudouridine synthase activity
ATY49_09400	COG5002	protein histidine kinase activity
ATY49_09400	COG5001	Diguanylate cyclase
ATY49_09520	COG0415	Belongs to the DNA photolyase family
ATY49_09525	COG0305	Participates in initiation and elongation during chromosome replication
ATY49_09535	COG0367	asparagine synthase
ATY49_09560	COG1960	acyl-CoA dehydrogenase activity
ATY49_09575	COG0084	hydrolase, TatD family'
ATY49_09580	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY49_09620	COG0735	belongs to the Fur family
ATY49_09655	COG3039	Transposase
ATY49_09675	COG3039	Transposase
ATY49_09700	COG2205	protein histidine kinase activity
ATY49_09715	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY49_09725	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY49_09735	COG2198	Histidine kinase
ATY49_09735	COG0643	Histidine kinase
ATY49_09740	COG0840	transmembrane signaling receptor activity
ATY49_09745	COG0835	chemotaxis
ATY49_09750	COG2199	diguanylate cyclase activity
ATY49_09750	COG2200	EAL domain
ATY49_09750	COG2202	Pas domain
ATY49_09755	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY49_09770	COG3590	peptidase
ATY49_09785	COG1515	deoxyribonuclease V activity
ATY49_09795	COG1741	Belongs to the pirin family
ATY49_09835	COG3501	Rhs element vgr protein
ATY49_09860	COG3501	Rhs element vgr protein
ATY49_09870	COG1741	Belongs to the pirin family
ATY49_09875	COG1966	Carbon starvation protein
ATY49_09880	COG2879	small protein
ATY49_09905	COG0604	alcohol dehydrogenase
ATY49_09905	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_09905	COG3321	synthase
ATY49_09910	COG5001	Diguanylate cyclase
ATY49_09910	COG3706	GGDEF domain
ATY49_09910	COG4251	negative regulation of phosphorylation
ATY49_09910	COG2203	Gaf domain
ATY49_09915	COG0629	single-stranded DNA binding
ATY49_09920	COG0142	geranyltranstransferase activity
ATY49_09950	COG0527	aspartate kinase activity
ATY49_09960	COG0384	phenazine biosynthesis protein PhzF
ATY49_09965	COG0384	phenazine biosynthesis protein PhzF
ATY49_09975	COG1764	response to oxidative stress
ATY49_10005	COG0519	Catalyzes the synthesis of GMP from XMP
ATY49_10030	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY49_10085	COG1959	2 iron, 2 sulfur cluster binding
ATY49_10090	COG0719	Fe-S assembly protein
ATY49_10095	COG0396	ATPase activity
ATY49_10100	COG0719	Fe-S assembly protein
ATY49_10105	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY49_10120	COG3039	Transposase
ATY49_10125	COG2963	transposase activity
ATY49_10130	COG2801	Transposase and inactivated derivatives
ATY49_10160	COG3328	transposase activity
ATY49_10170	COG2963	transposase activity
ATY49_10190	COG0326	Molecular chaperone. Has ATPase activity
ATY49_10195	COG2207	Transcriptional regulator
ATY49_10220	COG2755	lipolytic protein G-D-S-L family
ATY49_10220	COG0657	acetylesterase activity
ATY49_10245	COG0488	(ABC) transporter
ATY49_10275	COG4651	solute:proton antiporter activity
ATY49_10275	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY49_10280	COG2801	Transposase and inactivated derivatives
ATY49_10290	COG4772	TonB-dependent receptor
ATY49_10300	COG4264	IucA IucC family
ATY49_10315	COG0019	diaminopimelate decarboxylase activity
ATY49_10365	COG4206	TonB-dependent receptor
ATY49_10380	COG2963	transposase activity
ATY49_10395	COG0542	response to heat
ATY49_10425	COG0534	Mate efflux family protein
ATY49_10465	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY49_10475	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY49_10530	COG1555	photosystem II stabilization
ATY49_10535	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY49_10555	COG3178	'Phosphotransferase
ATY49_10560	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY49_10570	COG0628	permease
ATY49_10595	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY49_10620	COG0271	Belongs to the BolA IbaG family
ATY49_10630	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY49_10640	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY49_10645	COG1137	ATPase activity
ATY49_10660	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY49_10680	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY49_10685	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY49_10690	COG2239	Acts as a magnesium transporter
ATY49_10700	COG1294	oxidase, subunit
ATY49_10705	COG1271	oxidase subunit
ATY49_10715	COG1113	amino acid transport
ATY49_10725	COG2197	response regulator
ATY49_10730	COG0531	amino acid
ATY49_10785	COG0789	Transcriptional regulator
ATY49_10805	COG0754	glutathionylspermidine amidase activity
ATY49_10830	COG1842	Phage shock protein A
ATY49_10850	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY49_10860	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY49_10895	COG2201	protein-glutamate methylesterase activity
ATY49_10940	COG3293	Transposase
ATY49_10970	COG3293	Transposase
ATY49_10990	COG2201	protein-glutamate methylesterase activity
ATY49_11020	COG3039	Transposase
ATY49_11035	COG3328	transposase activity
ATY49_11080	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY49_11105	COG0811	peptide transport
ATY49_11130	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY49_11145	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY49_11160	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY49_11170	COG0354	folic acid binding
ATY49_11180	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY49_11190	COG0363	glucosamine-6-phosphate deaminase activity
ATY49_11195	COG0129	dihydroxy-acid dehydratase activity
ATY49_11200	COG0800	Aldolase
ATY49_11235	COG5002	protein histidine kinase activity
ATY49_11235	COG2205	protein histidine kinase activity
ATY49_11235	COG0784	Response regulator, receiver
ATY49_11245	COG3293	Transposase
ATY49_11265	COG3706	GGDEF domain
ATY49_11320	COG0386	Belongs to the glutathione peroxidase family
ATY49_11405	COG2203	Gaf domain
ATY49_11405	COG3706	GGDEF domain
ATY49_11405	COG5001	Diguanylate cyclase
ATY49_11405	COG4251	negative regulation of phosphorylation
ATY49_11415	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY49_11445	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ATY49_11460	COG0617	tRNA 3'-terminal CCA addition
ATY49_11475	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY49_11490	COG2963	transposase activity
ATY49_11530	COG4566	intracellular signal transduction
ATY49_11540	COG2963	transposase activity
ATY49_11555	COG0077	Prephenate dehydratase
ATY49_11555	COG1605	Chorismate mutase
ATY49_11565	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY49_11610	COG2986	histidine ammonia-lyase
ATY49_11620	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY49_11640	COG2963	transposase activity
ATY49_11660	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY49_11675	COG3115	cell septum assembly
ATY49_11700	COG0316	Belongs to the HesB IscA family
ATY49_11735	COG0288	reversible hydration of carbon dioxide
ATY49_11760	COG2925	Exonuclease
ATY49_11770	COG0667	Aldo Keto reductase
ATY49_11795	COG0488	(ABC) transporter
ATY49_11800	COG4133	protoheme IX ABC transporter activity
ATY49_11805	COG0488	(ABC) transporter
ATY49_11840	COG0494	nUDIX hydrolase
ATY49_11850	COG1024	Enoyl-CoA hydratase
ATY49_11860	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY49_11875	COG3039	Transposase
ATY49_11890	COG3293	Transposase
ATY49_11910	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY49_11915	COG0573	inorganic phosphate transmembrane transporter activity
ATY49_11930	COG0704	Plays a role in the regulation of phosphate uptake
ATY49_11940	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY49_11955	COG3328	transposase activity
ATY49_11985	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY49_11995	COG1862	Preprotein translocase
ATY49_12070	COG3293	Transposase
ATY49_12085	COG0405	Gamma-glutamyltransferase
ATY49_12090	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY49_12110	COG0742	ribosomal rna small subunit methyltransferase
ATY49_12135	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY49_12170	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_12175	COG3039	Transposase
ATY49_12205	COG0303	'Molybdopterin
ATY49_12215	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY49_12225	COG1426	Protein conserved in bacteria
ATY49_12240	COG0105	UTP biosynthetic process
ATY49_12250	COG1024	Enoyl-CoA hydratase
ATY49_12250	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY49_12255	COG0183	Belongs to the thiolase family
ATY49_12260	COG0038	chloride channel
ATY49_12280	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY49_12300	COG1674	ftsk spoiiie
ATY49_12305	COG0492	ferredoxin-NADP+ reductase activity
ATY49_12330	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY49_12335	COG0542	response to heat
ATY49_12340	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY49_12350	COG0482	sulfurtransferase activity
ATY49_12375	COG5001	Diguanylate cyclase
ATY49_12380	COG4585	Histidine kinase
ATY49_12390	COG5002	protein histidine kinase activity
ATY49_12410	COG0784	Response regulator, receiver
ATY49_12410	COG0835	chemotaxis
ATY49_12420	COG1558	bacterial-type flagellum-dependent cell motility
ATY49_12425	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY49_12430	COG1749	Flagellar hook protein flgE
ATY49_12435	COG4787	bacterial-type flagellum-dependent cell motility
ATY49_12440	COG4786	Flagellar basal body rod
ATY49_12470	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY49_12475	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY49_12505	COG2201	protein-glutamate methylesterase activity
ATY49_12510	COG2204	response regulator
ATY49_12525	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY49_12535	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_12565	COG1677	Flagellar hook-basal body complex protein FliE
ATY49_12615	COG3190	flagellar
ATY49_12625	COG1987	bacterial-type flagellum assembly
ATY49_12630	COG1684	flagellar biosynthetic protein fliR
ATY49_12635	COG5001	Diguanylate cyclase
ATY49_12635	COG3300	MHYT domain
ATY49_12640	COG5001	Diguanylate cyclase
ATY49_12640	COG3300	MHYT domain
ATY49_12655	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY49_12665	COG0455	bacterial-type flagellum organization
ATY49_12685	COG2198	Histidine kinase
ATY49_12685	COG0643	Histidine kinase
ATY49_12700	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_12715	COG3039	Transposase
ATY49_12720	COG3209	COG3209 Rhs family protein
ATY49_12730	COG3039	Transposase
ATY49_12740	COG3039	Transposase
ATY49_12835	COG3039	Transposase
ATY49_12840	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY49_12845	COG4988	ABC transporter
ATY49_12855	COG1271	oxidase subunit
ATY49_12860	COG1294	oxidase, subunit
ATY49_12920	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY49_12925	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY49_12935	COG0137	argininosuccinate synthase activity
ATY49_12940	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY49_12955	COG2166	iron-sulfur cluster assembly
ATY49_12970	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY49_12985	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY49_12995	COG4302	ethanolamine ammonia-lyase activity
ATY49_13000	COG3293	Transposase
ATY49_13025	COG3039	Transposase
ATY49_13035	COG4677	pectinesterase activity
ATY49_13075	COG0402	S-adenosylhomocysteine deaminase activity
ATY49_13090	COG1509	lysine 2,3-aminomutase activity
ATY49_13095	COG5001	Diguanylate cyclase
ATY49_13095	COG3300	MHYT domain
ATY49_13110	COG0483	inositol monophosphate 1-phosphatase activity
ATY49_13140	COG0513	Belongs to the DEAD box helicase family
ATY49_13160	COG0625	glutathione transferase activity
ATY49_13175	COG4681	YaeQ
ATY49_13180	COG2081	HI0933 family
ATY49_13200	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_13225	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY49_13230	COG0802	atpase or kinase
ATY49_13235	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY49_13235	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY49_13240	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY49_13250	COG3293	Transposase
ATY49_13270	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY49_13320	COG3328	transposase activity
ATY49_13350	COG2969	positive regulation of protein catabolic process
ATY49_13355	COG0625	glutathione transferase activity
ATY49_13360	COG2857	Cytochrome c1
ATY49_13365	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY49_13370	COG0723	plastoquinol--plastocyanin reductase activity
ATY49_13375	COG0741	lytic transglycosylase activity
ATY49_13400	COG1702	phosphate starvation-inducible protein PhoH
ATY49_13420	COG4535	Mg2 and Co2 transporter CorC
ATY49_13435	COG1012	belongs to the aldehyde dehydrogenase family
ATY49_13445	COG1177	transmembrane transport
ATY49_13490	COG0174	glutamine synthetase
ATY49_13495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY49_13500	COG3706	GGDEF domain
ATY49_13500	COG0745	RESPONSE REGULATOR receiver
ATY49_13505	COG0477	Major facilitator Superfamily
ATY49_13515	COG0243	molybdopterin cofactor binding
ATY49_13535	COG3293	Transposase
ATY49_13550	COG1121	(ABC) transporter
ATY49_13560	COG2733	membrane
ATY49_13565	COG0784	Response regulator, receiver
ATY49_13565	COG2205	protein histidine kinase activity
ATY49_13565	COG5002	protein histidine kinase activity
ATY49_13575	COG3039	Transposase
ATY49_13590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY49_13595	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY49_13615	COG1609	Transcriptional regulator
ATY49_13620	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY49_13620	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY49_13625	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY49_13630	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY49_13630	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY49_13645	COG3039	Transposase
ATY49_13690	COG3501	Rhs element vgr protein
ATY49_13710	COG3501	Rhs element vgr protein
ATY49_13765	COG4771	TonB-dependent receptor
ATY49_13775	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY49_13795	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY49_13800	COG1360	Flagellar Motor Protein
ATY49_13805	COG1192	Involved in chromosome partitioning
ATY49_13810	COG0835	chemotaxis
ATY49_13820	COG0745	RESPONSE REGULATOR receiver
ATY49_13850	COG0840	transmembrane signaling receptor activity
ATY49_13860	COG0840	transmembrane signaling receptor activity
ATY49_13865	COG0840	transmembrane signaling receptor activity
ATY49_13870	COG0840	transmembrane signaling receptor activity
ATY49_13875	COG0840	transmembrane signaling receptor activity
ATY49_13880	COG0840	transmembrane signaling receptor activity
ATY49_13890	COG0835	chemotaxis
ATY49_13915	COG0840	transmembrane signaling receptor activity
ATY49_13940	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY49_13970	COG0318	PFAM AMP-dependent synthetase and ligase
ATY49_13975	COG1024	Enoyl-CoA hydratase
ATY49_13980	COG2205	protein histidine kinase activity
ATY49_13980	COG2198	Histidine kinase
ATY49_13980	COG0784	Response regulator, receiver
ATY49_14000	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY49_14030	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY49_14040	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY49_14045	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY49_14055	COG0505	Belongs to the CarA family
ATY49_14060	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY49_14070	COG3293	Transposase
ATY49_14075	COG2258	MOSC domain
ATY49_14080	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY49_14145	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_14155	COG0477	Major facilitator Superfamily
ATY49_14165	COG1070	Carbohydrate kinase
ATY49_14180	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY49_14195	COG0800	Aldolase
ATY49_14210	COG3734	2-keto-3-deoxy-galactonokinase
ATY49_14215	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY49_14225	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY49_14240	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY49_14245	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY49_14255	COG0351	phosphomethylpyrimidine kinase
ATY49_14285	COG0583	DNA-binding transcription factor activity
ATY49_14290	COG1741	Belongs to the pirin family
ATY49_14310	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY49_14315	COG0305	Participates in initiation and elongation during chromosome replication
ATY49_14335	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY49_14345	COG2137	regulation of response to DNA damage stimulus
ATY49_14365	COG1546	Belongs to the CinA family
ATY49_14370	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY49_14375	COG1923	regulation of RNA biosynthetic process
ATY49_14385	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY49_14390	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY49_14400	COG1534	Rna-binding protein
ATY49_14415	COG1238	metal cluster binding
ATY49_14430	COG2840	Smr protein MutS2
ATY49_14500	COG1434	Gram-negative-bacterium-type cell wall biogenesis
ATY49_14505	COG0306	phosphate transporter
ATY49_14515	COG1253	flavin adenine dinucleotide binding
ATY49_14530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY49_14535	COG0477	Major facilitator Superfamily
ATY49_14540	COG1132	(ABC) transporter
ATY49_14545	COG1136	(ABC) transporter
ATY49_14565	COG0438	transferase activity, transferring glycosyl groups
ATY49_14575	COG2264	protein methyltransferase activity
ATY49_14605	COG2244	polysaccharide biosynthetic process
ATY49_14655	COG1595	DNA-templated transcription, initiation
ATY49_14670	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY49_14690	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY49_14750	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY49_14755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY49_14785	COG2963	transposase activity
ATY49_14800	COG4644	lycopene metabolic process
ATY49_14810	COG1858	cytochrome C peroxidase
ATY49_14850	COG0515	serine threonine protein kinase
ATY49_14855	COG0631	protein serine/threonine phosphatase activity
ATY49_14890	COG3501	Rhs element vgr protein
ATY49_14900	COG3039	Transposase
ATY49_14955	COG3039	Transposase
ATY49_14970	COG3039	Transposase
ATY49_15005	COG2801	Transposase and inactivated derivatives
ATY49_15015	COG0316	Belongs to the HesB IscA family
ATY49_15015	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ATY49_15020	COG2154	pterin-4-alpha-carbinolamine dehydratase
ATY49_15030	COG0428	transporter
ATY49_15035	COG0428	transporter
ATY49_15050	COG1530	ribonuclease E activity
ATY49_15060	COG3293	Transposase
ATY49_15075	COG3039	Transposase
ATY49_15095	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY49_15135	COG3039	Transposase
ATY49_15175	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY49_15175	COG1648	precorrin-2 dehydrogenase activity
ATY49_15200	COG0746	molybdenum cofactor guanylyltransferase activity
ATY49_15265	COG4206	TonB-dependent receptor
ATY49_15295	COG4206	TonB-dependent receptor
ATY49_15345	COG0531	amino acid
ATY49_15360	COG0006	proline dipeptidase activity
ATY49_15370	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY49_15385	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY49_15390	COG3938	Belongs to the proline racemase family
ATY49_15400	COG0552	protein localization to endoplasmic reticulum
ATY49_15420	COG4191	Histidine kinase
ATY49_15420	COG0784	Response regulator, receiver
ATY49_15440	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY49_15550	COG0438	transferase activity, transferring glycosyl groups
ATY49_15555	COG0438	transferase activity, transferring glycosyl groups
ATY49_15600	COG0776	regulation of translation
ATY49_15615	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY49_15620	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY49_15625	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY49_15640	COG2963	transposase activity
ATY49_15660	COG0556	nucleotide-excision repair
ATY49_15665	COG4969	Belongs to the N-Me-Phe pilin family
ATY49_15705	COG1611	Belongs to the LOG family
ATY49_15715	COG2095	MarC family integral membrane protein
ATY49_15725	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY49_15730	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY49_15765	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY49_15785	COG0195	Participates in both transcription termination and antitermination
ATY49_15800	COG1007	ATP synthesis coupled electron transport
ATY49_15815	COG0713	ATP synthesis coupled electron transport
ATY49_15830	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY49_15835	COG1034	ATP synthesis coupled electron transport
ATY49_15840	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY49_15845	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY49_15865	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY49_15885	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_15900	COG3293	Transposase
ATY49_15980	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY49_15985	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY49_15995	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY49_16015	COG0433	COG0433 Predicted ATPase
ATY49_16020	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_16035	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY49_16045	COG0412	Dienelactone hydrolase
ATY49_16065	COG0489	protein tyrosine kinase activity
ATY49_16100	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY49_16105	COG2311	Membrane
ATY49_16110	COG1047	Peptidyl-prolyl cis-trans
ATY49_16115	COG0791	NLP P60 protein
ATY49_16120	COG0791	NLP P60 protein
ATY49_16135	COG1301	dicarboxylic acid transport
ATY49_16140	COG1785	Belongs to the alkaline phosphatase family
ATY49_16145	COG0037	tRNA processing
ATY49_16155	COG0142	geranyltranstransferase activity
ATY49_16175	COG0312	modulator of DNA gyrase
ATY49_16185	COG0312	modulator of DNA gyrase
ATY49_16195	COG3164	Protein of unknown function
ATY49_16200	COG1530	ribonuclease E activity
ATY49_16210	COG2968	Membrane
ATY49_16245	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY49_16270	COG3118	belongs to the thioredoxin family
ATY49_16285	COG3293	Transposase
ATY49_16335	COG3293	Transposase
ATY49_16350	COG3039	Transposase
ATY49_16355	COG3039	Transposase
ATY49_16380	COG3293	Transposase
ATY49_16385	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_16415	COG2801	Transposase and inactivated derivatives
ATY49_16425	COG2963	transposase activity
ATY49_16470	COG0471	metal ion transport
ATY49_16470	COG3273	potassium ion transport
ATY49_16500	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_16510	COG1970	mechanosensitive ion channel activity
ATY49_16520	COG3293	Transposase
ATY49_16530	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY49_16535	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY49_16565	COG0308	aminopeptidase N
ATY49_16570	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY49_16580	COG0529	Catalyzes the synthesis of activated sulfate
ATY49_16580	COG2895	sulfate adenylyltransferase (ATP) activity
ATY49_16590	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY49_16620	COG2205	protein histidine kinase activity
ATY49_16620	COG2198	Histidine kinase
ATY49_16620	COG0784	Response regulator, receiver
ATY49_16655	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY49_16660	COG3588	fructose-bisphosphate aldolase
ATY49_16665	COG0469	pyruvate kinase activity
ATY49_16705	COG0753	catalase activity
ATY49_16720	COG3039	Transposase
ATY49_16740	COG2207	Transcriptional regulator
ATY49_16740	COG1917	Cupin 2, conserved barrel domain protein
ATY49_16765	COG1506	peptidase
ATY49_16765	COG0823	Involved in the tonB-independent uptake of proteins
ATY49_16780	COG1297	OPT oligopeptide transporter protein
ATY49_16795	COG0587	DNA-directed DNA polymerase activity
ATY49_16840	COG0406	alpha-ribazole phosphatase activity
ATY49_16840	COG0328	RNA-DNA hybrid ribonuclease activity
ATY49_16880	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY49_16885	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY49_16890	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY49_16895	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY49_16915	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY49_17005	COG3501	Rhs element vgr protein
ATY49_17070	COG3501	Rhs element vgr protein
ATY49_17095	COG3501	Rhs element vgr protein
ATY49_17100	COG3501	Rhs element vgr protein
ATY49_17105	COG3179	chitinase
ATY49_17110	COG3501	Rhs element vgr protein
ATY49_17165	COG3501	Rhs element vgr protein
ATY49_17190	COG3501	Rhs element vgr protein
ATY49_17200	COG3039	Transposase
ATY49_17210	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY49_17220	COG3501	Rhs element vgr protein
ATY49_17270	COG2963	transposase activity
ATY49_17300	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY49_17315	COG2197	response regulator
ATY49_17320	COG4585	Histidine kinase
ATY49_17335	COG2894	cell division
ATY49_17340	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY49_17350	COG0642	Histidine kinase
ATY49_17355	COG0745	RESPONSE REGULATOR receiver
ATY49_17360	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY49_17370	COG2194	sulfuric ester hydrolase activity
ATY49_17400	COG3551	Protein conserved in bacteria
ATY49_17445	COG2963	transposase activity
ATY49_17455	COG3293	Transposase
ATY49_17470	COG0203	ribosomal protein L17
ATY49_17475	COG0202	RNA polymerase activity
ATY49_17490	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY49_17495	COG0201	protein transport
ATY49_17505	COG1841	ribosomal large subunit assembly
ATY49_17510	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY49_17530	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY49_17550	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY49_17555	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY49_17560	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY49_17585	COG0089	rRNA binding
ATY49_17625	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY49_17660	COG0250	Participates in transcription elongation, termination and antitermination
ATY49_17665	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY49_17695	COG0012	GTP binding
ATY49_17710	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY49_17750	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY49_17770	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY49_17800	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY49_17810	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY49_17840	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY49_17845	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY49_17865	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY49_17880	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY49_17880	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY49_17925	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY49_17935	COG3634	alkyl hydroperoxide reductase activity
ATY49_17940	COG0583	DNA-binding transcription factor activity
ATY49_17945	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY49_17950	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY49_18010	COG4783	chaperone-mediated protein folding
ATY49_18025	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY49_18035	COG0438	transferase activity, transferring glycosyl groups
ATY49_18040	COG0671	phosphoesterase, PA-phosphatase related
ATY49_18055	COG2833	Protein of unknown function (DUF455)
ATY49_18075	COG0285	dihydrofolate synthase activity
ATY49_18080	COG0406	alpha-ribazole phosphatase activity
ATY49_18110	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY49_18115	COG4208	sulfate ABC transporter
ATY49_18120	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY49_18125	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY49_18130	COG0156	8-amino-7-oxononanoate synthase activity
ATY49_18160	COG1902	pentaerythritol trinitrate reductase activity
ATY49_18160	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY49_18170	COG2963	transposase activity
ATY49_18205	COG0745	RESPONSE REGULATOR receiver
ATY49_18205	COG3706	GGDEF domain
ATY49_18235	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_18245	COG3293	Transposase
ATY49_18290	COG3386	PFAM SMP-30 Gluconolaconase
ATY49_18310	COG1024	Enoyl-CoA hydratase
ATY49_18320	COG0318	PFAM AMP-dependent synthetase and ligase
ATY49_18325	COG0583	DNA-binding transcription factor activity
ATY49_18365	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY49_18370	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY49_18380	COG2096	Adenosyltransferase
ATY49_18385	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY49_18400	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY49_18415	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ATY49_18455	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY49_18465	COG0642	Histidine kinase
ATY49_18480	COG4181	ATPase activity
ATY49_18490	COG2175	clavaminate synthase activity
ATY49_18500	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY49_18525	COG0667	Aldo Keto reductase
ATY49_18535	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY49_18540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY49_18555	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY49_18560	COG4106	trans-aconitate 2-methyltransferase activity
ATY49_18570	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY49_18580	COG3293	Transposase
ATY49_18625	COG2226	methyltransferase
ATY49_18675	COG0604	alcohol dehydrogenase
ATY49_18675	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_18675	COG3321	synthase
ATY49_18685	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY49_18695	COG0494	nUDIX hydrolase
ATY49_18710	COG1388	LysM domain
ATY49_18710	COG4942	peptidase
ATY49_18735	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY49_18740	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY49_18765	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY49_18780	COG3116	cell division
ATY49_18820	COG1988	membrane-bound metal-dependent
ATY49_18825	COG0277	FAD linked oxidase domain protein
ATY49_18830	COG0745	RESPONSE REGULATOR receiver
ATY49_18835	COG2205	protein histidine kinase activity
ATY49_18845	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY49_18850	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY49_18875	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY49_18905	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY49_18905	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY49_18945	COG0488	(ABC) transporter
ATY49_18990	COG0745	RESPONSE REGULATOR receiver
ATY49_18995	COG2205	protein histidine kinase activity
ATY49_19070	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY49_19080	COG2963	transposase activity
ATY49_19085	COG3039	Transposase
ATY49_19090	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY49_19095	COG3293	Transposase
ATY49_19105	COG3039	Transposase
ATY49_19145	COG3039	Transposase
ATY49_19150	COG3293	Transposase
ATY49_19180	COG0726	polysaccharide deacetylase
ATY49_19180	COG1649	PFAM Uncharacterised BCR, COG1649
ATY49_19185	COG1215	transferase activity, transferring glycosyl groups
ATY49_19195	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY49_19200	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY49_19205	COG1609	Transcriptional regulator
ATY49_19230	COG3250	beta-galactosidase activity
ATY49_19265	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY49_19270	COG4191	Histidine kinase
ATY49_19275	COG0784	Response regulator, receiver
ATY49_19280	COG4251	negative regulation of phosphorylation
ATY49_19285	COG2823	Periplasmic or secreted lipoprotein
ATY49_19290	COG0673	inositol 2-dehydrogenase activity
ATY49_19295	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY49_19335	COG1056	cytidyltransferase-related domain
ATY49_19335	COG1051	belongs to the nudix hydrolase family
ATY49_19370	COG1686	Belongs to the peptidase S11 family
ATY49_19380	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY49_19385	COG2951	lytic endotransglycosylase activity
ATY49_19420	COG0772	Belongs to the SEDS family
ATY49_19435	COG1792	Involved in formation and maintenance of cell shape
ATY49_19440	COG1077	Cell shape determining protein MreB Mrl
ATY49_19490	COG2199	diguanylate cyclase activity
ATY49_19495	COG0308	aminopeptidase N
ATY49_19520	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY49_19560	COG1505	serine-type exopeptidase activity
ATY49_19595	COG3275	phosphorelay sensor kinase activity
ATY49_19615	COG3706	GGDEF domain
ATY49_19625	COG0659	secondary active sulfate transmembrane transporter activity
ATY49_19630	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY49_19630	COG5297	Belongs to the glycosyl hydrolase family 6
ATY49_19640	COG0840	transmembrane signaling receptor activity
ATY49_19670	COG3293	Transposase
ATY49_19710	COG0598	Magnesium transport protein CorA
ATY49_19720	COG1113	amino acid transport
ATY49_19725	COG5297	Belongs to the glycosyl hydrolase family 6
ATY49_19730	COG4305	rare lipoprotein A
ATY49_19735	COG0697	spore germination
ATY49_19795	COG4221	oxidoreductase activity
ATY49_19810	COG2963	transposase activity
ATY49_19830	COG0456	acetyltransferase
ATY49_19840	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY49_19870	COG3227	Zinc metalloprotease (Elastase)
ATY49_19885	COG2111	Na H antiporter
ATY49_19885	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY49_19890	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY49_19895	COG0651	ATP synthesis coupled electron transport
ATY49_19905	COG2212	antiporter activity
ATY49_19910	COG1320	monovalent cation:proton antiporter activity
ATY49_19915	COG3293	Transposase
ATY49_19925	COG3039	Transposase
ATY49_19950	COG3104	oligopeptide transport
ATY49_19995	COG3293	Transposase
ATY49_20005	COG0183	Belongs to the thiolase family
ATY49_20055	COG3039	Transposase
ATY49_20085	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY49_20110	COG4948	Mandelate Racemase Muconate Lactonizing
ATY49_20140	COG3293	Transposase
ATY49_20150	COG0531	amino acid
ATY49_20165	COG3293	Transposase
ATY49_20180	COG4682	membrane
ATY49_20185	COG3039	Transposase
ATY49_20195	COG2133	pyrroloquinoline quinone binding
ATY49_20225	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_20235	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY49_20245	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY49_20250	COG1610	YqeY-like protein
ATY49_20255	COG1295	ribonuclease BN
ATY49_20260	COG0358	DNA primase activity
ATY49_20315	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY49_20325	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY49_20340	COG2963	transposase activity
ATY49_20345	COG2801	Transposase and inactivated derivatives
ATY49_20445	COG2963	transposase activity
ATY49_20450	COG2801	Transposase and inactivated derivatives
ATY49_20510	COG3039	Transposase
ATY49_20520	COG3328	transposase activity
ATY49_20535	COG1473	amidohydrolase
ATY49_20540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY49_20545	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY49_20555	COG5383	Protein conserved in bacteria
ATY49_20585	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY49_20605	COG0028	Belongs to the TPP enzyme family
ATY49_20610	COG4191	Histidine kinase
ATY49_20635	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY49_20650	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY49_20655	COG3177	Filamentation induced by cAMP protein fic
ATY49_20670	COG0596	Alpha beta hydrolase
ATY49_20680	COG0318	PFAM AMP-dependent synthetase and ligase
ATY49_20685	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY49_20735	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY49_20765	COG3039	Transposase
ATY49_20790	COG2801	Transposase and inactivated derivatives
ATY49_20795	COG2963	transposase activity
ATY49_20880	COG2353	YceI-like domain
ATY49_20915	COG3039	Transposase
ATY49_20920	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY49_20935	COG3386	PFAM SMP-30 Gluconolaconase
ATY49_20980	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY49_20990	COG4771	TonB-dependent receptor
ATY49_21005	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY49_21035	COG1252	NADH dehydrogenase
ATY49_21045	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY49_21055	COG2201	protein-glutamate methylesterase activity
ATY49_21060	COG2177	Part of the ABC transporter FtsEX involved in
ATY49_21065	COG2884	Cell division ATP-binding protein ftsE
ATY49_21075	COG3118	belongs to the thioredoxin family
ATY49_21080	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY49_21090	COG2963	transposase activity
ATY49_21100	COG0729	surface antigen
ATY49_21105	COG2911	Protein conserved in bacteria
ATY49_21135	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY49_21150	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATY49_21200	COG1733	regulation of RNA biosynthetic process
ATY49_21205	COG0702	epimerase
ATY49_21235	COG0583	DNA-binding transcription factor activity
ATY49_21240	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY49_21250	COG2205	protein histidine kinase activity
ATY49_21255	COG2205	protein histidine kinase activity
ATY49_21260	COG0745	RESPONSE REGULATOR receiver
ATY49_21280	COG1902	pentaerythritol trinitrate reductase activity
ATY49_21285	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY49_21295	COG2814	Major facilitator Superfamily
ATY49_21300	COG0583	DNA-binding transcription factor activity
ATY49_21310	COG0084	hydrolase, TatD family'
ATY49_21340	COG3293	Transposase
ATY49_21360	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY49_21415	COG3293	Transposase
ATY49_21425	COG2826	transposase and inactivated derivatives, IS30 family
ATY49_21440	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY49_21445	COG1960	acyl-CoA dehydrogenase activity
ATY49_21505	COG0523	cobalamin synthesis protein
ATY49_21515	COG0697	spore germination
ATY49_21525	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY49_21540	COG4771	TonB-dependent receptor
ATY49_21545	COG0457	Tetratricopeptide repeat
ATY49_21560	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY49_21575	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY49_21575	COG0519	Catalyzes the synthesis of GMP from XMP
ATY49_21585	COG0805	protein transport
ATY49_21595	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY49_21605	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY49_21645	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY49_21655	COG4948	Mandelate Racemase Muconate Lactonizing
ATY49_21665	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY49_21670	COG0246	Mannitol dehydrogenase
ATY49_21695	COG3693	PFAM glycoside hydrolase, family 10
ATY49_21700	COG3693	PFAM glycoside hydrolase, family 10
ATY49_21720	COG2211	Major facilitator Superfamily
ATY49_21755	COG3293	Transposase
ATY49_21815	COG1846	Transcriptional regulator
ATY49_21820	COG1764	response to oxidative stress
ATY49_21905	COG3549	Plasmid maintenance system killer
ATY49_21915	COG1074	ATP-dependent DNA helicase activity
ATY49_21920	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY49_21960	COG2032	superoxide dismutase activity
ATY49_21965	COG2032	superoxide dismutase activity
ATY49_21970	COG2204	response regulator
ATY49_21975	COG3852	Histidine kinase
ATY49_21980	COG0004	ammonium transporteR
ATY49_21985	COG0347	Belongs to the P(II) protein family
ATY49_21990	COG0174	glutamine synthetase
ATY49_22040	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY49_22050	COG2062	phosphohistidine phosphatase, SixA
ATY49_22055	COG0489	protein tyrosine kinase activity
ATY49_22075	COG1396	sequence-specific DNA binding
ATY49_22080	COG3550	peptidyl-serine autophosphorylation
ATY49_22085	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY49_22090	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY49_22105	COG1125	glycine betaine transport
ATY49_22105	COG0517	IMP dehydrogenase activity
ATY49_22120	COG1119	ATPase activity
ATY49_22130	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY49_22145	COG3039	Transposase
ATY49_22155	COG2963	transposase activity
ATY49_22170	COG0656	L-ascorbic acid biosynthetic process
ATY49_22175	COG2130	NADP-dependent
ATY49_22180	COG0667	Aldo Keto reductase
ATY49_22190	COG1187	pseudouridine synthase activity
ATY49_22205	COG1643	Atp-dependent helicase
ATY49_22210	COG4807	Protein conserved in bacteria
ATY49_22215	COG4948	Mandelate Racemase Muconate Lactonizing
ATY49_22220	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY49_22225	COG1028	Short-chain dehydrogenase reductase Sdr
ATY49_22245	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY49_22285	COG3162	membrane
ATY49_22290	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY49_22300	COG0708	Exodeoxyribonuclease III
ATY49_22315	COG2091	lysine biosynthetic process via aminoadipic acid
ATY49_22325	COG3540	Alkaline phosphatase
ATY49_22345	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY49_22350	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY49_22375	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY49_22380	COG0583	DNA-binding transcription factor activity
ATY49_22385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY49_22400	COG0210	DNA helicase
ATY49_22415	COG0531	amino acid
ATY49_22420	COG1322	Protein conserved in bacteria
ATY49_22430	COG0386	Belongs to the glutathione peroxidase family
ATY49_22485	COG0793	Belongs to the peptidase S41A family
ATY49_22490	COG4942	peptidase
ATY49_22500	COG2234	aminopeptidase activity
ATY49_22550	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY49_22555	COG0302	gtp cyclohydrolase
ATY49_22580	COG0477	Major facilitator Superfamily
ATY49_22660	COG1929	Belongs to the glycerate kinase type-1 family
ATY49_22665	COG2271	Major facilitator Superfamily
ATY49_22680	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY49_22685	COG0861	Integral membrane protein TerC family
ATY49_22695	COG0584	glycerophosphoryl diester phosphodiesterase
ATY49_22705	COG0671	phosphoesterase, PA-phosphatase related
ATY49_22715	COG0726	polysaccharide deacetylase
ATY49_22730	COG0230	Belongs to the bacterial ribosomal protein bL34 family