locus-tag class description CDO11_00005 PF11638 DnaA N-terminal domain CDO11_00005 PF00308 Bacterial dnaA protein CDO11_00005 PF08299 Bacterial dnaA protein helix-turn-helix CDO11_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CDO11_00010 PF02767 DNA polymerase III beta subunit, central domain CDO11_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CDO11_00015 PF02463 RecF/RecN/SMC N terminal domain CDO11_00020 PF18053 DNA gyrase B subunit insert domain CDO11_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_00020 PF01751 Toprim domain CDO11_00020 PF00204 DNA gyrase B CDO11_00030 PF01435 Peptidase family M48 CDO11_00040 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_00045 PF01618 MotA/TolQ/ExbB proton channel family CDO11_00050 PF02472 Biopolymer transport protein ExbD/TolR CDO11_00055 PF02472 Biopolymer transport protein ExbD/TolR CDO11_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDO11_00070 PF13396 Phospholipase_D-nuclease N-terminal CDO11_00070 PF13091 PLD-like domain CDO11_00080 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDO11_00085 PF00155 Aminotransferase class I and II CDO11_00090 PF07715 TonB-dependent Receptor Plug Domain CDO11_00090 PF00593 TonB dependent receptor CDO11_00105 PF01609 Transposase DDE domain CDO11_00105 PF05598 Transposase domain (DUF772) CDO11_00110 PF01070 FMN-dependent dehydrogenase CDO11_00115 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CDO11_00130 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CDO11_00130 PF07055 Enoyl reductase FAD binding domain CDO11_00130 PF12241 Trans-2-enoyl-CoA reductase catalytic region CDO11_00140 PF00294 pfkB family carbohydrate kinase CDO11_00155 PF01609 Transposase DDE domain CDO11_00155 PF05598 Transposase domain (DUF772) CDO11_00165 PF00005 ABC transporter CDO11_00175 PF05598 Transposase domain (DUF772) CDO11_00215 PF05598 Transposase domain (DUF772) CDO11_00215 PF01609 Transposase DDE domain CDO11_00225 PF00271 Helicase conserved C-terminal domain CDO11_00225 PF00270 DEAD/DEAH box helicase CDO11_00235 PF06903 VirK protein CDO11_00305 PF03150 Di-haem cytochrome c peroxidase CDO11_00315 PF13460 NAD(P)H-binding CDO11_00320 PF00128 Alpha amylase, catalytic domain CDO11_00320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00330 PF00128 Alpha amylase, catalytic domain CDO11_00335 PF02446 4-alpha-glucanotransferase CDO11_00340 PF11941 Domain of unknown function (DUF3459) CDO11_00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00340 PF00128 Alpha amylase, catalytic domain CDO11_00345 PF00128 Alpha amylase, catalytic domain CDO11_00345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00345 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_00350 PF00534 Glycosyl transferases group 1 CDO11_00350 PF08323 Starch synthase catalytic domain CDO11_00355 PF00990 Diguanylate cyclase, GGDEF domain CDO11_00355 PF00072 Response regulator receiver domain CDO11_00365 PF05661 Protein of unknown function (DUF808) CDO11_00375 PF03109 ABC1 family CDO11_00385 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_00420 PF01464 Transglycosylase SLT domain CDO11_00430 PF01609 Transposase DDE domain CDO11_00430 PF05598 Transposase domain (DUF772) CDO11_00440 PF01311 Bacterial export proteins, family 1 CDO11_00450 PF18269 T3SS EscN ATPase C-terminal domain CDO11_00450 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_00450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_00465 PF01514 Secretory protein of YscJ/FliF family CDO11_00480 PF01312 FlhB HrpN YscU SpaS Family CDO11_00485 PF00771 FHIPEP family CDO11_00500 PF00813 FliP family CDO11_00505 PF01313 Bacterial export proteins, family 3 CDO11_00555 PF01609 Transposase DDE domain CDO11_00555 PF05598 Transposase domain (DUF772) CDO11_00570 PF01609 Transposase DDE domain CDO11_00570 PF05598 Transposase domain (DUF772) CDO11_00580 PF05819 NolX protein CDO11_00610 PF00595 PDZ domain CDO11_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_00620 PF08521 Two-component sensor kinase N-terminal CDO11_00620 PF00512 His Kinase A (phospho-acceptor) domain CDO11_00625 PF01370 NAD dependent epimerase/dehydratase family CDO11_00625 PF08338 Domain of unknown function (DUF1731) CDO11_00635 PF05598 Transposase domain (DUF772) CDO11_00635 PF01609 Transposase DDE domain CDO11_00660 PF13936 Helix-turn-helix domain CDO11_00660 PF00665 Integrase core domain CDO11_00680 PF00293 NUDIX domain CDO11_00680 PF13344 Haloacid dehalogenase-like hydrolase CDO11_00715 PF13533 Biotin-lipoyl like CDO11_00725 PF00005 ABC transporter CDO11_00750 PF08845 Toxin SymE, type I toxin-antitoxin system CDO11_00770 PF03006 Haemolysin-III related CDO11_00775 PF00271 Helicase conserved C-terminal domain CDO11_00775 PF00270 DEAD/DEAH box helicase CDO11_00775 PF09369 Domain of unknown function (DUF1998) CDO11_00840 PF00310 Glutamine amidotransferases class-II CDO11_00840 PF04898 Glutamate synthase central domain CDO11_00840 PF01645 Conserved region in glutamate synthase CDO11_00840 PF01493 GXGXG motif CDO11_00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_00845 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDO11_00885 PF05598 Transposase domain (DUF772) CDO11_00900 PF00356 Bacterial regulatory proteins, lacI family CDO11_00930 PF00128 Alpha amylase, catalytic domain CDO11_00930 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_00930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00935 PF16657 Maltogenic Amylase, C-terminal domain CDO11_00935 PF00128 Alpha amylase, catalytic domain CDO11_00940 PF11896 Domain of unknown function (DUF3416) CDO11_00940 PF00128 Alpha amylase, catalytic domain CDO11_00990 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDO11_00990 PF01078 Magnesium chelatase, subunit ChlI CDO11_00995 PF04380 Membrane fusogenic activity CDO11_01000 PF00543 Nitrogen regulatory protein P-II CDO11_01035 PF17284 Spermidine synthase tetramerisation domain CDO11_01040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_01040 PF17810 Arginine decarboxylase helical bundle domain CDO11_01040 PF17944 Arginine decarboxylase C-terminal helical extension CDO11_01045 PF05598 Transposase domain (DUF772) CDO11_01050 PF04717 Type VI secretion system, phage-baseplate injector CDO11_01050 PF16671 Actin cross-linking domain CDO11_01090 PF01134 Glucose inhibited division protein A CDO11_01090 PF13932 GidA associated domain CDO11_01105 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_01125 PF13649 Methyltransferase domain CDO11_01135 PF12697 Alpha/beta hydrolase family CDO11_01145 PF13276 HTH-like domain CDO11_01145 PF13683 Integrase core domain CDO11_01155 PF04349 Periplasmic glucan biosynthesis protein, MdoG CDO11_01165 PF00265 Thymidine kinase CDO11_01170 PF13361 UvrD-like helicase C-terminal domain CDO11_01170 PF00580 UvrD/REP helicase N-terminal domain CDO11_01185 PF04337 Protein of unknown function, DUF480 CDO11_01190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CDO11_01195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO11_01200 PF04820 Tryptophan halogenase CDO11_01215 PF00356 Bacterial regulatory proteins, lacI family CDO11_01230 PF01553 Acyltransferase CDO11_01270 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CDO11_01275 PF01037 Lrp/AsnC ligand binding domain CDO11_01285 PF00665 Integrase core domain CDO11_01285 PF13936 Helix-turn-helix domain CDO11_01320 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_01320 PF00107 Zinc-binding dehydrogenase CDO11_01330 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01340 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01350 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01360 PF02810 SEC-C motif CDO11_01375 PF05598 Transposase domain (DUF772) CDO11_01375 PF01609 Transposase DDE domain CDO11_01380 PF01263 Aldose 1-epimerase CDO11_01390 PF01126 Heme oxygenase CDO11_01395 PF13426 PAS domain CDO11_01395 PF00360 Phytochrome region CDO11_01395 PF01590 GAF domain CDO11_01395 PF08446 PAS fold CDO11_01445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO11_01445 PF06827 Zinc finger found in FPG and IleRS CDO11_01445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDO11_01455 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_01470 PF04333 MlaA lipoprotein CDO11_01480 PF05494 MlaC protein CDO11_01485 PF02470 MlaD protein CDO11_01490 PF02405 Permease MlaE CDO11_01495 PF00005 ABC transporter CDO11_01525 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_01580 PF01011 PQQ enzyme repeat CDO11_01580 PF13570 PQQ-like domain CDO11_01580 PF13360 PQQ-like domain CDO11_01590 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_01610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CDO11_01610 PF06165 Glycosyltransferase family 36 CDO11_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_01625 PF00512 His Kinase A (phospho-acceptor) domain CDO11_01630 PF02659 Putative manganese efflux pump CDO11_01635 PF01614 Bacterial transcriptional regulator CDO11_01635 PF09339 IclR helix-turn-helix domain CDO11_01640 PF07690 Major Facilitator Superfamily CDO11_01645 PF05336 L-rhamnose mutarotase CDO11_01670 PF01432 Peptidase family M3 CDO11_01685 PF00472 RF-1 domain CDO11_01695 PF00849 RNA pseudouridylate synthase CDO11_01705 PF03109 ABC1 family CDO11_01755 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_01810 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDO11_01810 PF02558 Ketopantoate reductase PanE/ApbA CDO11_01820 PF01061 ABC-2 type transporter CDO11_01825 PF00005 ABC transporter CDO11_01830 PF00175 Oxidoreductase NAD-binding domain CDO11_01830 PF01383 CpcD/allophycocyanin linker domain CDO11_01835 PF01545 Cation efflux family CDO11_01840 PF02583 Metal-sensitive transcriptional repressor CDO11_01850 PF01381 Helix-turn-helix CDO11_01860 PF00005 ABC transporter CDO11_01875 PF04820 Tryptophan halogenase CDO11_01895 PF02798 Glutathione S-transferase, N-terminal domain CDO11_01895 PF00043 Glutathione S-transferase, C-terminal domain CDO11_01900 PF00326 Prolyl oligopeptidase family CDO11_01900 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_01925 PF00490 Delta-aminolevulinic acid dehydratase CDO11_01950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_01950 PF03466 LysR substrate binding domain CDO11_01960 PF00175 Oxidoreductase NAD-binding domain CDO11_01960 PF00258 Flavodoxin CDO11_01960 PF00667 FAD binding domain CDO11_01975 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDO11_01975 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_01975 PF08501 Shikimate dehydrogenase substrate binding domain CDO11_01985 PF13307 Helicase C-terminal domain CDO11_01985 PF06733 DEAD_2 CDO11_01990 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_02015 PF13533 Biotin-lipoyl like CDO11_02020 PF00199 Catalase CDO11_02020 PF06628 Catalase-related immune-responsive CDO11_02045 PF01207 Dihydrouridine synthase (Dus) CDO11_02055 PF00072 Response regulator receiver domain CDO11_02055 PF00486 Transcriptional regulatory protein, C terminal CDO11_02060 PF00672 HAMP domain CDO11_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_02060 PF00512 His Kinase A (phospho-acceptor) domain CDO11_02085 PF02237 Biotin protein ligase C terminal domain CDO11_02085 PF03099 Biotin/lipoate A/B protein ligase family CDO11_02085 PF08279 HTH domain CDO11_02090 PF03309 Type III pantothenate kinase CDO11_02105 PF02223 Thymidylate kinase CDO11_02130 PF00491 Arginase family CDO11_02145 PF05532 CsbD-like CDO11_02150 PF00579 tRNA synthetases class I (W and Y) CDO11_02155 PF00753 Metallo-beta-lactamase superfamily CDO11_02185 PF00892 EamA-like transporter family CDO11_02205 PF00199 Catalase CDO11_02210 PF04542 Sigma-70 region 2 CDO11_02210 PF08281 Sigma-70, region 4 CDO11_02220 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO11_02220 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_02230 PF01594 AI-2E family transporter CDO11_02245 PF01040 UbiA prenyltransferase family CDO11_02255 PF04055 Radical SAM superfamily CDO11_02255 PF06968 Biotin and Thiamin Synthesis associated domain CDO11_02260 PF00155 Aminotransferase class I and II CDO11_02290 PF00535 Glycosyl transferase family 2 CDO11_02300 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_02300 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_02305 PF05166 YcgL domain CDO11_02320 PF00723 Glycosyl hydrolases family 15 CDO11_02325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_02325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_02335 PF02254 TrkA-N domain CDO11_02335 PF00999 Sodium/hydrogen exchanger family CDO11_02340 PF01769 Divalent cation transporter CDO11_02340 PF03448 MgtE intracellular N domain CDO11_02340 PF00571 CBS domain CDO11_02350 PF13607 Succinyl-CoA ligase like flavodoxin domain CDO11_02350 PF13380 CoA binding domain CDO11_02350 PF00583 Acetyltransferase (GNAT) family CDO11_02360 PF00317 Ribonucleotide reductase, all-alpha domain CDO11_02360 PF02867 Ribonucleotide reductase, barrel domain CDO11_02360 PF03477 ATP cone domain CDO11_02370 PF00268 Ribonucleotide reductase, small chain CDO11_02400 PF00108 Thiolase, N-terminal domain CDO11_02400 PF02803 Thiolase, C-terminal domain CDO11_02405 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CDO11_02405 PF00775 Dioxygenase CDO11_02420 PF10397 Adenylosuccinate lyase C-terminus CDO11_02420 PF00206 Lyase CDO11_02425 PF12146 Serine aminopeptidase, S33 CDO11_02430 PF02627 Carboxymuconolactone decarboxylase family CDO11_02440 PF09339 IclR helix-turn-helix domain CDO11_02440 PF01614 Bacterial transcriptional regulator CDO11_02455 PF00106 short chain dehydrogenase CDO11_02470 PF00750 tRNA synthetases class I (R) CDO11_02470 PF05746 DALR anticodon binding domain CDO11_02470 PF03485 Arginyl tRNA synthetase N terminal domain CDO11_02475 PF04002 RadC-like JAB domain CDO11_02480 PF04127 DNA / pantothenate metabolism flavoprotein CDO11_02480 PF02441 Flavoprotein CDO11_02485 PF00692 dUTPase CDO11_02490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_02490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_02490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_02490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_02505 PF00535 Glycosyl transferase family 2 CDO11_02510 PF01370 NAD dependent epimerase/dehydratase family CDO11_02520 PF17762 HTH domain found in ParB protein CDO11_02520 PF02195 ParB-like nuclease domain CDO11_02525 PF13614 AAA domain CDO11_02535 PF00156 Phosphoribosyl transferase domain CDO11_02540 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_02545 PF07690 Major Facilitator Superfamily CDO11_02555 PF03702 Anhydro-N-acetylmuramic acid kinase CDO11_02560 PF01551 Peptidase family M23 CDO11_02560 PF04225 Opacity-associated protein A LysM-like domain CDO11_02565 PF00579 tRNA synthetases class I (W and Y) CDO11_02600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_02600 PF00672 HAMP domain CDO11_02600 PF00072 Response regulator receiver domain CDO11_02600 PF01627 Hpt domain CDO11_02600 PF00512 His Kinase A (phospho-acceptor) domain CDO11_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_02605 PF00486 Transcriptional regulatory protein, C terminal CDO11_02605 PF00072 Response regulator receiver domain CDO11_02630 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_02640 PF01521 Iron-sulphur cluster biosynthesis CDO11_02650 PF00293 NUDIX domain CDO11_02650 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDO11_02650 PF09297 NADH pyrophosphatase zinc ribbon domain CDO11_02655 PF17113 Regulatory signalling modulator protein AmpE CDO11_02655 PF03186 CobD/Cbib protein CDO11_02675 PF07690 Major Facilitator Superfamily CDO11_02690 PF12805 FUSC-like inner membrane protein yccS CDO11_02700 PF12704 MacB-like periplasmic core domain CDO11_02700 PF02687 FtsX-like permease family CDO11_02700 PF00005 ABC transporter CDO11_02705 PF02844 Phosphoribosylglycinamide synthetase, N domain CDO11_02705 PF02843 Phosphoribosylglycinamide synthetase, C domain CDO11_02705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDO11_02715 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system CDO11_02720 PF02142 MGS-like domain CDO11_02720 PF01808 AICARFT/IMPCHase bienzyme CDO11_02735 PF12147 Putative methyltransferase CDO11_02735 PF12146 Serine aminopeptidase, S33 CDO11_02745 PF12147 Putative methyltransferase CDO11_02745 PF12146 Serine aminopeptidase, S33 CDO11_02750 PF00782 Dual specificity phosphatase, catalytic domain CDO11_02765 PF02954 Bacterial regulatory protein, Fis family CDO11_02780 PF01381 Helix-turn-helix CDO11_02815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_02815 PF00289 Biotin carboxylase, N-terminal domain CDO11_02815 PF02785 Biotin carboxylase C-terminal domain CDO11_02825 PF00364 Biotin-requiring enzyme CDO11_02830 PF01220 Dehydroquinase class II CDO11_02840 PF02683 Cytochrome C biogenesis protein transmembrane region CDO11_02840 PF11412 Disulphide bond corrector protein DsbC CDO11_02845 PF03091 CutA1 divalent ion tolerance protein CDO11_02875 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDO11_02875 PF18074 Primosomal protein N C-terminal domain CDO11_02875 PF17764 3′ DNA-binding domain (3′BD) CDO11_02875 PF00271 Helicase conserved C-terminal domain CDO11_02875 PF00270 DEAD/DEAH box helicase CDO11_02900 PF01554 MatE CDO11_02905 PF01343 Peptidase family S49 CDO11_02930 PF01300 Telomere recombination CDO11_02935 PF01751 Toprim domain CDO11_02935 PF01131 DNA topoisomerase CDO11_02935 PF13368 Topoisomerase C-terminal repeat CDO11_02945 PF00114 Pilin (bacterial filament) CDO11_02945 PF07963 Prokaryotic N-terminal methylation motif CDO11_02950 PF04361 Protein of unknown function (DUF494) CDO11_02955 PF17782 DprA winged helix domain CDO11_02955 PF02481 DNA recombination-mediator protein A CDO11_02960 PF01476 LysM domain CDO11_02965 PF01327 Polypeptide deformylase CDO11_02970 PF02911 Formyl transferase, C-terminal domain CDO11_02970 PF00551 Formyl transferase CDO11_02975 PF01029 NusB family CDO11_02975 PF01189 16S rRNA methyltransferase RsmB/F CDO11_02990 PF00535 Glycosyl transferase family 2 CDO11_03010 PF00925 GTP cyclohydrolase II CDO11_03025 PF03279 Bacterial lipid A biosynthesis acyltransferase CDO11_03030 PF02580 D-Tyr-tRNA(Tyr) deacylase CDO11_03035 PF04545 Sigma-70, region 4 CDO11_03035 PF04539 Sigma-70 region 3 CDO11_03035 PF04542 Sigma-70 region 2 CDO11_03035 PF00140 Sigma-70 factor, region 1.2 CDO11_03035 PF03979 Sigma-70 factor, region 1.1 CDO11_03035 PF04546 Sigma-70, non-essential region CDO11_03050 PF00589 Phage integrase family CDO11_03070 PF07996 Type IV secretion system proteins CDO11_03085 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CDO11_03110 PF03852 DNA mismatch endonuclease Vsr CDO11_03115 PF00145 C-5 cytosine-specific DNA methylase CDO11_03195 PF00005 ABC transporter CDO11_03210 PF00593 TonB dependent receptor CDO11_03210 PF07715 TonB-dependent Receptor Plug Domain CDO11_03250 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_03250 PF13823 Alcohol dehydrogenase GroES-associated CDO11_03250 PF00107 Zinc-binding dehydrogenase CDO11_03265 PF02322 Cytochrome bd terminal oxidase subunit II CDO11_03270 PF01654 Cytochrome bd terminal oxidase subunit I CDO11_03285 PF00158 Sigma-54 interaction domain CDO11_03285 PF00072 Response regulator receiver domain CDO11_03285 PF02954 Bacterial regulatory protein, Fis family CDO11_03300 PF08448 PAS fold CDO11_03300 PF03705 CheR methyltransferase, all-alpha domain CDO11_03300 PF01739 CheR methyltransferase, SAM binding domain CDO11_03300 PF01339 CheB methylesterase CDO11_03320 PF06580 Histidine kinase CDO11_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_03320 PF02743 Cache domain CDO11_03320 PF00672 HAMP domain CDO11_03335 PF13520 Amino acid permease CDO11_03355 PF01431 Peptidase family M13 CDO11_03355 PF05649 Peptidase family M13 CDO11_03370 PF00248 Aldo/keto reductase family CDO11_03375 PF03358 NADPH-dependent FMN reductase CDO11_03385 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_03395 PF03167 Uracil DNA glycosylase superfamily CDO11_03405 PF02469 Fasciclin domain CDO11_03420 PF00999 Sodium/hydrogen exchanger family CDO11_03425 PF00005 ABC transporter CDO11_03430 PF01061 ABC-2 type transporter CDO11_03445 PF04151 Bacterial pre-peptidase C-terminal domain CDO11_03445 PF00082 Subtilase family CDO11_03455 PF08448 PAS fold CDO11_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_03455 PF13188 PAS domain CDO11_03455 PF00072 Response regulator receiver domain CDO11_03455 PF00512 His Kinase A (phospho-acceptor) domain CDO11_03460 PF00072 Response regulator receiver domain CDO11_03460 PF00486 Transcriptional regulatory protein, C terminal CDO11_03480 PF00691 OmpA family CDO11_03480 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDO11_03485 PF01618 MotA/TolQ/ExbB proton channel family CDO11_03495 PF01641 SelR domain CDO11_03505 PF01037 Lrp/AsnC ligand binding domain CDO11_03510 PF01266 FAD dependent oxidoreductase CDO11_03515 PF00842 Alanine racemase, C-terminal domain CDO11_03515 PF01168 Alanine racemase, N-terminal domain CDO11_03535 PF00512 His Kinase A (phospho-acceptor) domain CDO11_03535 PF00989 PAS fold CDO11_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_03550 PF07995 Glucose / Sorbosone dehydrogenase CDO11_03570 PF05175 Methyltransferase small domain CDO11_03570 PF08468 Methyltransferase small domain N-terminal CDO11_03575 PF01479 S4 domain CDO11_03575 PF00849 RNA pseudouridylate synthase CDO11_03580 PF13419 Haloacid dehalogenase-like hydrolase CDO11_03610 PF04461 Protein of unknown function (DUF520) CDO11_03615 PF00892 EamA-like transporter family CDO11_03620 PF09383 NIL domain CDO11_03620 PF00005 ABC transporter CDO11_03625 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_03630 PF03180 NLPA lipoprotein CDO11_03655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_03655 PF02817 e3 binding domain CDO11_03655 PF00364 Biotin-requiring enzyme CDO11_03665 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_03665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_03685 PF00119 ATP synthase A chain CDO11_03690 PF00137 ATP synthase subunit C CDO11_03695 PF00430 ATP synthase B/B' CF(0) CDO11_03700 PF00213 ATP synthase delta (OSCP) subunit CDO11_03705 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_03705 PF00306 ATP synthase alpha/beta chain, C terminal domain CDO11_03705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_03710 PF00231 ATP synthase CDO11_03715 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_03715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_03720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDO11_03725 PF01817 Chorismate mutase type II CDO11_03740 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_03740 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_03740 PF12804 MobA-like NTP transferase domain CDO11_03770 PF00005 ABC transporter CDO11_03770 PF08402 TOBE domain CDO11_03775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_03780 PF01380 SIS domain CDO11_03795 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_03815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_03820 PF05275 Copper resistance protein B precursor (CopB) CDO11_03825 PF07731 Multicopper oxidase CDO11_03825 PF07732 Multicopper oxidase CDO11_03825 PF00394 Multicopper oxidase CDO11_03840 PF01432 Peptidase family M3 CDO11_03850 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_03850 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_03855 PF07977 FabA-like domain CDO11_03865 PF11799 impB/mucB/samB family C-terminal domain CDO11_03865 PF00817 impB/mucB/samB family CDO11_03870 PF13419 Haloacid dehalogenase-like hydrolase CDO11_03880 PF13185 GAF domain CDO11_03895 PF01242 6-pyruvoyl tetrahydropterin synthase CDO11_03905 PF00271 Helicase conserved C-terminal domain CDO11_03905 PF00270 DEAD/DEAH box helicase CDO11_03920 PF13417 Glutathione S-transferase, N-terminal domain CDO11_03925 PF00437 Type II/IV secretion system protein CDO11_03945 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_03945 PF00571 CBS domain CDO11_03950 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_03960 PF01370 NAD dependent epimerase/dehydratase family CDO11_04000 PF00005 ABC transporter CDO11_04010 PF01012 Electron transfer flavoprotein domain CDO11_04010 PF00766 Electron transfer flavoprotein FAD-binding domain CDO11_04015 PF01012 Electron transfer flavoprotein domain CDO11_04020 PF16363 GDP-mannose 4,6 dehydratase CDO11_04025 PF00483 Nucleotidyl transferase CDO11_04030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO11_04035 PF04321 RmlD substrate binding domain CDO11_04040 PF00483 Nucleotidyl transferase CDO11_04040 PF01050 Mannose-6-phosphate isomerase CDO11_04045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_04045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_04045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_04045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_04050 PF01144 Coenzyme A transferase CDO11_04055 PF01144 Coenzyme A transferase CDO11_04060 PF01609 Transposase DDE domain CDO11_04060 PF05598 Transposase domain (DUF772) CDO11_04065 PF05045 Rhamnan synthesis protein F CDO11_04065 PF14307 Glycosyltransferase WbsX CDO11_04090 PF03886 ABC-type transport auxiliary lipoprotein component CDO11_04090 PF02470 MlaD protein CDO11_04095 PF00005 ABC transporter CDO11_04100 PF02405 Permease MlaE CDO11_04110 PF00816 H-NS histone family CDO11_04115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_04115 PF04073 Aminoacyl-tRNA editing domain CDO11_04115 PF03129 Anticodon binding domain CDO11_04125 PF01066 CDP-alcohol phosphatidyltransferase CDO11_04150 PF01609 Transposase DDE domain CDO11_04150 PF05598 Transposase domain (DUF772) CDO11_04160 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CDO11_04160 PF01464 Transglycosylase SLT domain CDO11_04195 PF05598 Transposase domain (DUF772) CDO11_04205 PF08264 Anticodon-binding domain of tRNA CDO11_04205 PF10458 Valyl tRNA synthetase tRNA binding arm CDO11_04205 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_04220 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_04220 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO11_04230 PF03739 Lipopolysaccharide export system permease LptF/LptG CDO11_04245 PF00589 Phage integrase family CDO11_04245 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_04250 PF13098 Thioredoxin-like domain CDO11_04250 PF10411 Disulfide bond isomerase protein N-terminus CDO11_04260 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDO11_04260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDO11_04260 PF02769 AIR synthase related protein, C-terminal domain CDO11_04270 PF03895 YadA-like membrane anchor domain CDO11_04270 PF13018 Extended Signal Peptide of Type V secretion system CDO11_04270 PF05658 Head domain of trimeric autotransporter adhesin CDO11_04270 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO11_04285 PF00082 Subtilase family CDO11_04285 PF04151 Bacterial pre-peptidase C-terminal domain CDO11_04290 PF00437 Type II/IV secretion system protein CDO11_04290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_04300 PF00482 Type II secretion system (T2SS), protein F CDO11_04305 PF08334 Type II secretion system (T2SS), protein G CDO11_04310 PF12019 Type II transport protein GspH CDO11_04315 PF07963 Prokaryotic N-terminal methylation motif CDO11_04325 PF03934 Type II secretion system (T2SS), protein K CDO11_04330 PF05137 Fimbrial assembly protein (PilN) CDO11_04335 PF10741 Type II secretion system (T2SS), protein M subtype b CDO11_04345 PF03958 Bacterial type II/III secretion system short domain CDO11_04345 PF00263 Bacterial type II and III secretion system protein CDO11_04360 PF07702 UTRA domain CDO11_04360 PF00392 Bacterial regulatory proteins, gntR family CDO11_04375 PF00593 TonB dependent receptor CDO11_04375 PF07715 TonB-dependent Receptor Plug Domain CDO11_04405 PF01609 Transposase DDE domain CDO11_04405 PF05598 Transposase domain (DUF772) CDO11_04410 PF09827 CRISPR associated protein Cas2 CDO11_04415 PF01867 CRISPR associated protein Cas1 CDO11_04435 PF09704 CRISPR-associated protein (Cas_Cas5) CDO11_04455 PF02545 Maf-like protein CDO11_04460 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDO11_04465 PF01783 Ribosomal L32p protein family CDO11_04470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_04470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_04480 PF00698 Acyl transferase domain CDO11_04490 PF00550 Phosphopantetheine attachment site CDO11_04495 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_04495 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_04500 PF04715 Anthranilate synthase component I, N terminal region CDO11_04500 PF00425 chorismate binding enzyme CDO11_04505 PF02618 YceG-like family CDO11_04510 PF09115 DNA polymerase III, delta subunit, C terminal CDO11_04535 PF02954 Bacterial regulatory protein, Fis family CDO11_04535 PF06506 Propionate catabolism activator CDO11_04535 PF00158 Sigma-54 interaction domain CDO11_04545 PF00285 Citrate synthase, C-terminal domain CDO11_04550 PF00694 Aconitase C-terminal domain CDO11_04550 PF00330 Aconitase family (aconitate hydratase) CDO11_04560 PF04303 PrpF protein CDO11_04565 PF07715 TonB-dependent Receptor Plug Domain CDO11_04565 PF00593 TonB dependent receptor CDO11_04610 PF00665 Integrase core domain CDO11_04610 PF13936 Helix-turn-helix domain CDO11_04620 PF08534 Redoxin CDO11_04630 PF00226 DnaJ domain CDO11_04630 PF01556 DnaJ C terminal domain CDO11_04635 PF00072 Response regulator receiver domain CDO11_04640 PF01145 SPFH domain / Band 7 family CDO11_04640 PF12221 Bacterial membrane protein N terminal CDO11_04645 PF01145 SPFH domain / Band 7 family CDO11_04655 PF00709 Adenylosuccinate synthetase CDO11_04660 PF01433 Peptidase family M1 domain CDO11_04660 PF11838 ERAP1-like C-terminal domain CDO11_04670 PF05598 Transposase domain (DUF772) CDO11_04705 PF03279 Bacterial lipid A biosynthesis acyltransferase CDO11_04710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDO11_04715 PF02321 Outer membrane efflux protein CDO11_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_04745 PF00330 Aconitase family (aconitate hydratase) CDO11_04750 PF00694 Aconitase C-terminal domain CDO11_04760 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_04765 PF08502 LeuA allosteric (dimerisation) domain CDO11_04765 PF00682 HMGL-like CDO11_04770 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_04780 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_04780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_04780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_04785 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDO11_04785 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDO11_04795 PF01964 Radical SAM ThiC family CDO11_04795 PF13667 ThiC-associated domain CDO11_04800 PF00486 Transcriptional regulatory protein, C terminal CDO11_04800 PF18500 CadC C-terminal domain 1 CDO11_04805 PF12833 Helix-turn-helix domain CDO11_04810 PF07715 TonB-dependent Receptor Plug Domain CDO11_04810 PF00593 TonB dependent receptor CDO11_04825 PF00719 Inorganic pyrophosphatase CDO11_04860 PF00365 Phosphofructokinase CDO11_04870 PF08245 Mur ligase middle domain CDO11_04870 PF02875 Mur ligase family, glutamate ligase domain CDO11_04870 PF01225 Mur ligase family, catalytic domain CDO11_04880 PF01062 Bestrophin, RFP-TM, chloride channel CDO11_04895 PF00043 Glutathione S-transferase, C-terminal domain CDO11_04895 PF02798 Glutathione S-transferase, N-terminal domain CDO11_04900 PF00056 lactate/malate dehydrogenase, NAD binding domain CDO11_04900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDO11_04905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO11_04930 PF01474 Class-II DAHP synthetase family CDO11_04940 PF02600 Disulfide bond formation protein DsbB CDO11_04955 PF05598 Transposase domain (DUF772) CDO11_04990 PF05598 Transposase domain (DUF772) CDO11_04990 PF01609 Transposase DDE domain CDO11_05055 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_05070 PF01609 Transposase DDE domain CDO11_05070 PF05598 Transposase domain (DUF772) CDO11_05090 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_05095 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_05120 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_05120 PF18324 Hypothetical protein TT1725 CDO11_05175 PF05698 Bacterial trigger factor protein (TF) C-terminus CDO11_05175 PF05697 Bacterial trigger factor protein (TF) CDO11_05180 PF00574 Clp protease CDO11_05185 PF07724 AAA domain (Cdc48 subfamily) CDO11_05185 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_05185 PF06689 ClpX C4-type zinc finger CDO11_05190 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO11_05190 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_05190 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDO11_05195 PF00216 Bacterial DNA-binding protein CDO11_05220 PF01476 LysM domain CDO11_05220 PF05257 CHAP domain CDO11_05225 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO11_05225 PF00753 Metallo-beta-lactamase superfamily CDO11_05235 PF00075 RNase H CDO11_05240 PF00929 Exonuclease CDO11_05335 PF13356 Arm DNA-binding domain CDO11_05335 PF00589 Phage integrase family CDO11_05345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CDO11_05355 PF12706 Beta-lactamase superfamily domain CDO11_05355 PF00753 Metallo-beta-lactamase superfamily CDO11_05360 PF04055 Radical SAM superfamily CDO11_05360 PF06463 Molybdenum Cofactor Synthesis C CDO11_05370 PF01967 MoaC family CDO11_05375 PF02597 ThiS family CDO11_05380 PF02391 MoaE protein CDO11_05395 PF12170 DNA polymerase III tau subunit V interacting with alpha CDO11_05395 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDO11_05395 PF12169 DNA polymerase III subunits gamma and tau domain III CDO11_05400 PF02575 YbaB/EbfC DNA-binding family CDO11_05405 PF02132 RecR protein CDO11_05405 PF13662 Toprim domain CDO11_05410 PF01230 HIT domain CDO11_05420 PF11992 Domain of unknown function (DUF3488) CDO11_05420 PF01841 Transglutaminase-like superfamily CDO11_05420 PF13559 Domain of unknown function (DUF4129) CDO11_05430 PF17863 AAA lid domain CDO11_05430 PF07726 ATPase family associated with various cellular activities (AAA) CDO11_05450 PF01327 Polypeptide deformylase CDO11_05500 PF01609 Transposase DDE domain CDO11_05500 PF05598 Transposase domain (DUF772) CDO11_05525 PF00462 Glutaredoxin CDO11_05530 PF01522 Polysaccharide deacetylase CDO11_05555 PF03193 RsgA GTPase CDO11_05570 PF00128 Alpha amylase, catalytic domain CDO11_05590 PF00356 Bacterial regulatory proteins, lacI family CDO11_05595 PF00106 short chain dehydrogenase CDO11_05600 PF03600 Citrate transporter CDO11_05610 PF00072 Response regulator receiver domain CDO11_05610 PF00486 Transcriptional regulatory protein, C terminal CDO11_05615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_05615 PF00512 His Kinase A (phospho-acceptor) domain CDO11_05615 PF08521 Two-component sensor kinase N-terminal CDO11_05625 PF00196 Bacterial regulatory proteins, luxR family CDO11_05625 PF00072 Response regulator receiver domain CDO11_05640 PF03466 LysR substrate binding domain CDO11_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_05650 PF07690 Major Facilitator Superfamily CDO11_05655 PF00512 His Kinase A (phospho-acceptor) domain CDO11_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_05670 PF00375 Sodium:dicarboxylate symporter family CDO11_05675 PF00390 Malic enzyme, N-terminal domain CDO11_05675 PF03949 Malic enzyme, NAD binding domain CDO11_05675 PF01515 Phosphate acetyl/butaryl transferase CDO11_05705 PF02581 Thiamine monophosphate synthase CDO11_05710 PF00301 Rubredoxin CDO11_05715 PF13369 Transglutaminase-like superfamily CDO11_05725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDO11_05735 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDO11_05745 PF05164 Cell division protein ZapA CDO11_05755 PF03695 Uncharacterised protein family (UPF0149) CDO11_05760 PF00557 Metallopeptidase family M24 CDO11_05760 PF05195 Aminopeptidase P, N-terminal domain CDO11_05775 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_05785 PF00557 Metallopeptidase family M24 CDO11_05800 PF04055 Radical SAM superfamily CDO11_05800 PF06969 HemN C-terminal domain CDO11_05805 PF01725 Ham1 family CDO11_05815 PF03725 3' exoribonuclease family, domain 2 CDO11_05815 PF01138 3' exoribonuclease family, domain 1 CDO11_05820 PF08340 Domain of unknown function (DUF1732) CDO11_05820 PF03755 YicC-like family, N-terminal region CDO11_05825 PF00625 Guanylate kinase CDO11_05840 PF01192 RNA polymerase Rpb6 CDO11_05845 PF02824 TGS domain CDO11_05845 PF13291 ACT domain CDO11_05845 PF04607 Region found in RelA / SpoT proteins CDO11_05850 PF01042 Endoribonuclease L-PSP CDO11_05855 PF17191 RecG wedge domain CDO11_05855 PF00271 Helicase conserved C-terminal domain CDO11_05855 PF00270 DEAD/DEAH box helicase CDO11_05860 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO11_05865 PF01197 Ribosomal protein L31 CDO11_05870 PF00285 Citrate synthase, C-terminal domain CDO11_05880 PF00912 Transglycosylase CDO11_05880 PF00905 Penicillin binding protein transpeptidase domain CDO11_05880 PF17092 Penicillin-binding protein OB-like domain CDO11_05905 PF03958 Bacterial type II/III secretion system short domain CDO11_05905 PF00263 Bacterial type II and III secretion system protein CDO11_05905 PF11741 AMIN domain CDO11_05905 PF07660 Secretin and TonB N terminus short domain CDO11_05950 PF00092 von Willebrand factor type A domain CDO11_05950 PF07584 Aerotolerance regulator N-terminal CDO11_05970 PF00375 Sodium:dicarboxylate symporter family CDO11_05975 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_05975 PF02780 Transketolase, C-terminal domain CDO11_05975 PF02779 Transketolase, pyrimidine binding domain CDO11_05980 PF00593 TonB dependent receptor CDO11_05980 PF07715 TonB-dependent Receptor Plug Domain CDO11_05985 PF01551 Peptidase family M23 CDO11_05985 PF04225 Opacity-associated protein A LysM-like domain CDO11_05990 PF01476 LysM domain CDO11_05990 PF03734 L,D-transpeptidase catalytic domain CDO11_06015 PF00501 AMP-binding enzyme CDO11_06040 PF00486 Transcriptional regulatory protein, C terminal CDO11_06040 PF00072 Response regulator receiver domain CDO11_06045 PF00512 His Kinase A (phospho-acceptor) domain CDO11_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_06045 PF08521 Two-component sensor kinase N-terminal CDO11_06065 PF03459 TOBE domain CDO11_06065 PF00005 ABC transporter CDO11_06070 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_06080 PF04273 Putative phosphatase (DUF442) CDO11_06080 PF00753 Metallo-beta-lactamase superfamily CDO11_06115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO11_06115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDO11_06125 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_06145 PF00486 Transcriptional regulatory protein, C terminal CDO11_06145 PF00072 Response regulator receiver domain CDO11_06155 PF18030 RimK PreATP-grasp domain CDO11_06155 PF08443 RimK-like ATP-grasp domain CDO11_06160 PF05598 Transposase domain (DUF772) CDO11_06160 PF01609 Transposase DDE domain CDO11_06195 PF00027 Cyclic nucleotide-binding domain CDO11_06195 PF00520 Ion transport protein CDO11_06200 PF00202 Aminotransferase class-III CDO11_06215 PF01593 Flavin containing amine oxidoreductase CDO11_06220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO11_06220 PF00034 Cytochrome c CDO11_06235 PF00127 Copper binding proteins, plastocyanin/azurin family CDO11_06245 PF00202 Aminotransferase class-III CDO11_06270 PF13276 HTH-like domain CDO11_06270 PF00665 Integrase core domain CDO11_06270 PF13333 Integrase core domain CDO11_06295 PF03377 TAL effector repeat CDO11_06315 PF03377 TAL effector repeat CDO11_06330 PF03377 TAL effector repeat CDO11_06350 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDO11_06360 PF01761 3-dehydroquinate synthase CDO11_06365 PF01202 Shikimate kinase CDO11_06370 PF01243 Pyridoxamine 5'-phosphate oxidase CDO11_06370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDO11_06380 PF04012 PspA/IM30 family CDO11_06405 PF03738 Glutathionylspermidine synthase preATP-grasp CDO11_06430 PF09278 MerR, DNA binding CDO11_06430 PF00376 MerR family regulatory protein CDO11_06465 PF12706 Beta-lactamase superfamily domain CDO11_06485 PF00324 Amino acid permease CDO11_06490 PF00196 Bacterial regulatory proteins, luxR family CDO11_06495 PF00561 alpha/beta hydrolase fold CDO11_06505 PF00324 Amino acid permease CDO11_06515 PF01654 Cytochrome bd terminal oxidase subunit I CDO11_06520 PF02322 Cytochrome bd terminal oxidase subunit II CDO11_06525 PF00756 Putative esterase CDO11_06540 PF05524 PEP-utilising enzyme, N-terminal CDO11_06540 PF00391 PEP-utilising enzyme, mobile domain CDO11_06540 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_06545 PF00381 PTS HPr component phosphorylation site CDO11_06555 PF03668 P-loop ATPase protein family CDO11_06560 PF07475 HPr Serine kinase C-terminal domain CDO11_06560 PF02603 HPr Serine kinase N terminus CDO11_06565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_06570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDO11_06575 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO11_06575 PF04963 Sigma-54 factor, core binding domain CDO11_06575 PF04552 Sigma-54, DNA binding domain CDO11_06580 PF00005 ABC transporter CDO11_06585 PF03968 OstA-like protein CDO11_06600 PF01380 SIS domain CDO11_06600 PF00571 CBS domain CDO11_06605 PF01722 BolA-like protein CDO11_06610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_06635 PF00551 Formyl transferase CDO11_06650 PF02769 AIR synthase related protein, C-terminal domain CDO11_06650 PF00586 AIR synthase related protein, N-terminal domain CDO11_06660 PF01594 AI-2E family transporter CDO11_06665 PF00308 Bacterial dnaA protein CDO11_06670 PF00483 Nucleotidyl transferase CDO11_06675 PF01636 Phosphotransferase enzyme family CDO11_06690 PF07687 Peptidase dimerisation domain CDO11_06690 PF01546 Peptidase family M20/M25/M40 CDO11_06730 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CDO11_06735 PF01263 Aldose 1-epimerase CDO11_06740 PF01578 Cytochrome C assembly protein CDO11_06750 PF02978 Signal peptide binding domain CDO11_06750 PF02881 SRP54-type protein, helical bundle domain CDO11_06750 PF00448 SRP54-type protein, GTPase domain CDO11_06765 PF03060 Nitronate monooxygenase CDO11_06775 PF00886 Ribosomal protein S16 CDO11_06780 PF01782 RimM N-terminal domain CDO11_06780 PF05239 PRC-barrel domain CDO11_06785 PF01746 tRNA (Guanine-1)-methyltransferase CDO11_06790 PF01245 Ribosomal protein L19 CDO11_06800 PF01554 MatE CDO11_06805 PF01479 S4 domain CDO11_06830 PF01541 GIY-YIG catalytic domain CDO11_06835 PF17871 AAA lid domain CDO11_06835 PF02861 Clp amino terminal domain, pathogenicity island component CDO11_06835 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_06835 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_06835 PF07724 AAA domain (Cdc48 subfamily) CDO11_06860 PF00593 TonB dependent receptor CDO11_06860 PF07715 TonB-dependent Receptor Plug Domain CDO11_06885 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDO11_06885 PF12557 Cob(I)alamin adenosyltransferase N terminal CDO11_06895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDO11_06900 PF02277 Phosphoribosyltransferase CDO11_06910 PF02654 Cobalamin-5-phosphate synthase CDO11_06920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO11_06920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_06935 PF04183 IucA / IucC family CDO11_06935 PF06276 Ferric iron reductase FhuF-like transporter CDO11_06945 PF07660 Secretin and TonB N terminus short domain CDO11_06945 PF00593 TonB dependent receptor CDO11_06945 PF07715 TonB-dependent Receptor Plug Domain CDO11_06960 PF02254 TrkA-N domain CDO11_06960 PF00999 Sodium/hydrogen exchanger family CDO11_06970 PF07715 TonB-dependent Receptor Plug Domain CDO11_06970 PF00593 TonB dependent receptor CDO11_06975 PF00593 TonB dependent receptor CDO11_06975 PF07715 TonB-dependent Receptor Plug Domain CDO11_06990 PF07715 TonB-dependent Receptor Plug Domain CDO11_06990 PF00593 TonB dependent receptor CDO11_06995 PF00005 ABC transporter CDO11_06995 PF12848 ABC transporter CDO11_07010 PF03466 LysR substrate binding domain CDO11_07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_07020 PF07859 alpha/beta hydrolase fold CDO11_07020 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_07040 PF12833 Helix-turn-helix domain CDO11_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07045 PF00183 Hsp90 protein CDO11_07070 PF00872 Transposase, Mutator family CDO11_07075 PF00120 Glutamine synthetase, catalytic domain CDO11_07080 PF04204 Homoserine O-succinyltransferase CDO11_07085 PF01810 LysE type translocator CDO11_07090 PF07722 Peptidase C26 CDO11_07105 PF05598 Transposase domain (DUF772) CDO11_07105 PF01609 Transposase DDE domain CDO11_07135 PF05598 Transposase domain (DUF772) CDO11_07135 PF01609 Transposase DDE domain CDO11_07140 PF00355 Rieske [2Fe-2S] domain CDO11_07155 PF00266 Aminotransferase class-V CDO11_07160 PF01458 Uncharacterized protein family (UPF0051) CDO11_07165 PF00005 ABC transporter CDO11_07170 PF01458 Uncharacterized protein family (UPF0051) CDO11_07175 PF02082 Transcriptional regulator CDO11_07195 PF01965 DJ-1/PfpI family CDO11_07230 PF03807 NADP oxidoreductase coenzyme F420-dependent CDO11_07230 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDO11_07235 PF01168 Alanine racemase, N-terminal domain CDO11_07240 PF00437 Type II/IV secretion system protein CDO11_07245 PF00437 Type II/IV secretion system protein CDO11_07265 PF03352 Methyladenine glycosylase CDO11_07265 PF13302 Acetyltransferase (GNAT) domain CDO11_07265 PF00117 Glutamine amidotransferase class-I CDO11_07265 PF00958 GMP synthase C terminal domain CDO11_07265 PF13673 Acetyltransferase (GNAT) domain CDO11_07275 PF02622 Uncharacterized ACR, COG1678 CDO11_07280 PF03652 Holliday junction resolvase CDO11_07285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_07285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_07295 PF02566 OsmC-like protein CDO11_07305 PF02567 Phenazine biosynthesis-like protein CDO11_07315 PF00696 Amino acid kinase family CDO11_07315 PF01842 ACT domain CDO11_07330 PF08245 Mur ligase middle domain CDO11_07345 PF00348 Polyprenyl synthetase CDO11_07350 PF00436 Single-strand binding protein family CDO11_07355 PF00360 Phytochrome region CDO11_07355 PF00563 EAL domain CDO11_07355 PF01590 GAF domain CDO11_07355 PF00990 Diguanylate cyclase, GGDEF domain CDO11_07385 PF04328 Selenoprotein, putative CDO11_07390 PF02554 Carbon starvation protein CstA CDO11_07390 PF13722 5TM C-terminal transporter carbon starvation CstA CDO11_07395 PF02678 Pirin CDO11_07395 PF05726 Pirin C-terminal cupin domain CDO11_07405 PF04717 Type VI secretion system, phage-baseplate injector CDO11_07425 PF04717 Type VI secretion system, phage-baseplate injector CDO11_07455 PF04717 Type VI secretion system, phage-baseplate injector CDO11_07500 PF02678 Pirin CDO11_07500 PF05726 Pirin C-terminal cupin domain CDO11_07510 PF04493 Endonuclease V CDO11_07515 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_07530 PF05649 Peptidase family M13 CDO11_07530 PF01431 Peptidase family M13 CDO11_07535 PF13091 PLD-like domain CDO11_07540 PF00072 Response regulator receiver domain CDO11_07540 PF01339 CheB methylesterase CDO11_07545 PF03705 CheR methyltransferase, all-alpha domain CDO11_07545 PF01739 CheR methyltransferase, SAM binding domain CDO11_07550 PF13426 PAS domain CDO11_07550 PF00990 Diguanylate cyclase, GGDEF domain CDO11_07550 PF00563 EAL domain CDO11_07555 PF01584 CheW-like domain CDO11_07560 PF00672 HAMP domain CDO11_07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_07560 PF02203 Tar ligand binding domain homologue CDO11_07565 PF01584 CheW-like domain CDO11_07565 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07565 PF09078 CheY binding CDO11_07565 PF01627 Hpt domain CDO11_07575 PF17757 UvrB interaction domain CDO11_07575 PF00271 Helicase conserved C-terminal domain CDO11_07575 PF00270 DEAD/DEAH box helicase CDO11_07575 PF02559 CarD-like/TRCF domain CDO11_07575 PF03461 TRCF domain CDO11_07585 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDO11_07600 PF00672 HAMP domain CDO11_07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07600 PF00512 His Kinase A (phospho-acceptor) domain CDO11_07620 PF05598 Transposase domain (DUF772) CDO11_07620 PF01609 Transposase DDE domain CDO11_07640 PF05598 Transposase domain (DUF772) CDO11_07640 PF01609 Transposase DDE domain CDO11_07645 PF05598 Transposase domain (DUF772) CDO11_07645 PF01609 Transposase DDE domain CDO11_07680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_07685 PF01475 Ferric uptake regulator family CDO11_07720 PF00313 'Cold-shock' DNA-binding domain CDO11_07735 PF00899 ThiF family CDO11_07740 PF01026 TatD related DNase CDO11_07755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_07755 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_07755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_07765 PF13417 Glutathione S-transferase, N-terminal domain CDO11_07770 PF13537 Glutamine amidotransferase domain CDO11_07770 PF00733 Asparagine synthase CDO11_07775 PF03358 NADPH-dependent FMN reductase CDO11_07780 PF00772 DnaB-like helicase N terminal domain CDO11_07780 PF03796 DnaB-like helicase C terminal domain CDO11_07785 PF03441 FAD binding domain of DNA photolyase CDO11_07785 PF00875 DNA photolyase CDO11_07800 PF05736 OprF membrane domain CDO11_07800 PF00691 OmpA family CDO11_07820 PF00593 TonB dependent receptor CDO11_07820 PF07715 TonB-dependent Receptor Plug Domain CDO11_07840 PF00107 Zinc-binding dehydrogenase CDO11_07840 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_07845 PF00654 Voltage gated chloride channel CDO11_07855 PF01609 Transposase DDE domain CDO11_07855 PF05598 Transposase domain (DUF772) CDO11_07865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_07865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_07870 PF12833 Helix-turn-helix domain CDO11_07870 PF06029 AlkA N-terminal domain CDO11_07870 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_07870 PF02805 Metal binding domain of Ada CDO11_07915 PF04545 Sigma-70, region 4 CDO11_07915 PF04539 Sigma-70 region 3 CDO11_07915 PF04542 Sigma-70 region 2 CDO11_07950 PF03737 Aldolase/RraA CDO11_07960 PF00999 Sodium/hydrogen exchanger family CDO11_08000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_08000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_08005 PF12833 Helix-turn-helix domain CDO11_08005 PF02805 Metal binding domain of Ada CDO11_08005 PF06029 AlkA N-terminal domain CDO11_08005 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_08050 PF04545 Sigma-70, region 4 CDO11_08050 PF04539 Sigma-70 region 3 CDO11_08050 PF04542 Sigma-70 region 2 CDO11_08055 PF03880 DbpA RNA binding domain CDO11_08055 PF00270 DEAD/DEAH box helicase CDO11_08055 PF00271 Helicase conserved C-terminal domain CDO11_08060 PF00563 EAL domain CDO11_08060 PF00990 Diguanylate cyclase, GGDEF domain CDO11_08060 PF08448 PAS fold CDO11_08065 PF00849 RNA pseudouridylate synthase CDO11_08065 PF01479 S4 domain CDO11_08090 PF03737 Aldolase/RraA CDO11_08095 PF00144 Beta-lactamase CDO11_08100 PF00999 Sodium/hydrogen exchanger family CDO11_08105 PF00512 His Kinase A (phospho-acceptor) domain CDO11_08105 PF00672 HAMP domain CDO11_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08110 PF00486 Transcriptional regulatory protein, C terminal CDO11_08110 PF00072 Response regulator receiver domain CDO11_08115 PF02321 Outer membrane efflux protein CDO11_08130 PF00873 AcrB/AcrD/AcrF family CDO11_08140 PF00005 ABC transporter CDO11_08140 PF00664 ABC transporter transmembrane region CDO11_08150 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_08170 PF05598 Transposase domain (DUF772) CDO11_08170 PF01609 Transposase DDE domain CDO11_08185 PF05598 Transposase domain (DUF772) CDO11_08185 PF01609 Transposase DDE domain CDO11_08215 PF01121 Dephospho-CoA kinase CDO11_08220 PF06750 Bacterial Peptidase A24 N-terminal domain CDO11_08220 PF01478 Type IV leader peptidase family CDO11_08225 PF00482 Type II secretion system (T2SS), protein F CDO11_08230 PF07963 Prokaryotic N-terminal methylation motif CDO11_08230 PF00114 Pilin (bacterial filament) CDO11_08235 PF08019 Phosphoethanolamine transferase EptA/EptB CDO11_08235 PF00884 Sulfatase CDO11_08250 PF00437 Type II/IV secretion system protein CDO11_08250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_08255 PF02661 Fic/DOC family CDO11_08255 PF18543 Intracellular delivery domain CDO11_08265 PF02954 Bacterial regulatory protein, Fis family CDO11_08265 PF00072 Response regulator receiver domain CDO11_08265 PF00158 Sigma-54 interaction domain CDO11_08270 PF00512 His Kinase A (phospho-acceptor) domain CDO11_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08275 PF08442 ATP-grasp domain CDO11_08275 PF00549 CoA-ligase CDO11_08280 PF02629 CoA binding domain CDO11_08280 PF00549 CoA-ligase CDO11_08295 PF00795 Carbon-nitrogen hydrolase CDO11_08295 PF02540 NAD synthase CDO11_08300 PF13525 Outer membrane lipoprotein CDO11_08305 PF00849 RNA pseudouridylate synthase CDO11_08325 PF00982 Glycosyltransferase family 20 CDO11_08330 PF00723 Glycosyl hydrolases family 15 CDO11_08335 PF02358 Trehalose-phosphatase CDO11_08345 PF00593 TonB dependent receptor CDO11_08345 PF07715 TonB-dependent Receptor Plug Domain CDO11_08375 PF04376 Arginine-tRNA-protein transferase, N terminus CDO11_08375 PF04377 Arginine-tRNA-protein transferase, C terminus CDO11_08410 PF00378 Enoyl-CoA hydratase/isomerase CDO11_08425 PF17755 UvrA DNA-binding domain CDO11_08425 PF00005 ABC transporter CDO11_08425 PF17760 UvrA interaction domain CDO11_08430 PF00829 Ribosomal prokaryotic L21 protein CDO11_08435 PF01016 Ribosomal L27 protein CDO11_08440 PF01926 50S ribosome-binding GTPase CDO11_08440 PF01018 GTP1/OBG CDO11_08445 PF01649 Ribosomal protein S20 CDO11_08450 PF03023 Lipid II flippase MurJ CDO11_08455 PF01687 Riboflavin kinase CDO11_08455 PF06574 FAD synthetase CDO11_08460 PF06827 Zinc finger found in FPG and IleRS CDO11_08460 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_08460 PF08264 Anticodon-binding domain of tRNA CDO11_08465 PF01252 Signal peptidase (SPase) II CDO11_08470 PF02401 LytB protein CDO11_08485 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_08490 PF00510 Cytochrome c oxidase subunit III CDO11_08495 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDO11_08505 PF04717 Type VI secretion system, phage-baseplate injector CDO11_08515 PF05593 RHS Repeat CDO11_08515 PF03527 RHS protein CDO11_08570 PF00488 MutS domain V CDO11_08570 PF05190 MutS family domain IV CDO11_08570 PF05192 MutS domain III CDO11_08570 PF01624 MutS domain I CDO11_08570 PF05188 MutS domain II CDO11_08590 PF18073 Rubredoxin metal binding domain CDO11_08610 PF04185 Phosphoesterase family CDO11_08610 PF05506 Domain of unknown function (DUF756) CDO11_08615 PF05506 Domain of unknown function (DUF756) CDO11_08615 PF04185 Phosphoesterase family CDO11_08620 PF05506 Domain of unknown function (DUF756) CDO11_08620 PF04185 Phosphoesterase family CDO11_08640 PF00152 tRNA synthetases class II (D, K and N) CDO11_08640 PF01336 OB-fold nucleic acid binding domain CDO11_08640 PF02938 GAD domain CDO11_08655 PF01709 Transcriptional regulator CDO11_08660 PF02075 Crossover junction endodeoxyribonuclease RuvC CDO11_08665 PF07499 RuvA, C-terminal domain CDO11_08665 PF01330 RuvA N terminal domain CDO11_08670 PF02705 K+ potassium transporter CDO11_08675 PF17864 RuvB AAA lid domain CDO11_08675 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDO11_08675 PF05491 RuvB C-terminal winged helix domain CDO11_08680 PF03061 Thioesterase superfamily CDO11_08685 PF01618 MotA/TolQ/ExbB proton channel family CDO11_08690 PF02472 Biopolymer transport protein ExbD/TolR CDO11_08700 PF07676 WD40-like Beta Propeller Repeat CDO11_08700 PF04052 TolB amino-terminal domain CDO11_08705 PF00691 OmpA family CDO11_08715 PF04055 Radical SAM superfamily CDO11_08725 PF00849 RNA pseudouridylate synthase CDO11_08725 PF01479 S4 domain CDO11_08770 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_08775 PF05598 Transposase domain (DUF772) CDO11_08785 PF06508 Queuosine biosynthesis protein QueC CDO11_08810 PF09382 RQC domain CDO11_08810 PF00271 Helicase conserved C-terminal domain CDO11_08810 PF00270 DEAD/DEAH box helicase CDO11_08810 PF00570 HRDC domain CDO11_08810 PF16124 RecQ zinc-binding CDO11_08820 PF00210 Ferritin-like domain CDO11_08825 PF04408 Helicase associated domain (HA2) CDO11_08825 PF11898 Domain of unknown function (DUF3418) CDO11_08825 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDO11_08825 PF00271 Helicase conserved C-terminal domain CDO11_08825 PF00270 DEAD/DEAH box helicase CDO11_08835 PF02685 Glucokinase CDO11_08840 PF02685 Glucokinase CDO11_08855 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_08870 PF04055 Radical SAM superfamily CDO11_08870 PF13186 Iron-sulfur cluster-binding domain CDO11_08875 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDO11_08880 PF03070 TENA/THI-4/PQQC family CDO11_08885 PF12706 Beta-lactamase superfamily domain CDO11_08890 PF08042 PqqA family CDO11_08895 PF13291 ACT domain CDO11_08895 PF04607 Region found in RelA / SpoT proteins CDO11_08895 PF02824 TGS domain CDO11_08905 PF00535 Glycosyl transferase family 2 CDO11_08910 PF00905 Penicillin binding protein transpeptidase domain CDO11_08910 PF14814 Bifunctional transglycosylase second domain CDO11_08910 PF00912 Transglycosylase CDO11_08920 PF13307 Helicase C-terminal domain CDO11_08920 PF04851 Type III restriction enzyme, res subunit CDO11_08925 PF00814 Glycoprotease family CDO11_08930 PF03747 ADP-ribosylglycohydrolase CDO11_08940 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDO11_08940 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDO11_08945 PF00072 Response regulator receiver domain CDO11_08950 PF00072 Response regulator receiver domain CDO11_08955 PF01584 CheW-like domain CDO11_08960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_08960 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDO11_08965 PF00072 Response regulator receiver domain CDO11_08965 PF01627 Hpt domain CDO11_08965 PF01584 CheW-like domain CDO11_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08980 PF13302 Acetyltransferase (GNAT) domain CDO11_09010 PF01112 Asparaginase CDO11_09015 PF03932 CutC family CDO11_09065 PF01301 Glycosyl hydrolases family 35 CDO11_09075 PF07971 Glycosyl hydrolase family 92 CDO11_09075 PF17678 Glycosyl hydrolase family 92 N-terminal domain CDO11_09140 PF03412 Peptidase C39 family CDO11_09140 PF00005 ABC transporter CDO11_09140 PF00664 ABC transporter transmembrane region CDO11_09145 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_09145 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_09145 PF07691 PA14 domain CDO11_09145 PF14310 Fibronectin type III-like domain CDO11_09165 PF00704 Glycosyl hydrolases family 18 CDO11_09165 PF01476 LysM domain CDO11_09180 PF02685 Glucokinase CDO11_09185 PF04452 RNA methyltransferase CDO11_09190 PF00202 Aminotransferase class-III CDO11_09195 PF00293 NUDIX domain CDO11_09200 PF00459 Inositol monophosphatase family CDO11_09205 PF03819 MazG nucleotide pyrophosphohydrolase domain CDO11_09220 PF01145 SPFH domain / Band 7 family CDO11_09220 PF16200 C-terminal region of band_7 CDO11_09230 PF01571 Aminomethyltransferase folate-binding domain CDO11_09230 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO11_09235 PF01597 Glycine cleavage H-protein CDO11_09270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_09270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_09270 PF09317 Domain of unknown function (DUF1974) CDO11_09280 PF00440 Bacterial regulatory proteins, tetR family CDO11_09285 PF07715 TonB-dependent Receptor Plug Domain CDO11_09285 PF00593 TonB dependent receptor CDO11_09295 PF01430 Hsp33 protein CDO11_09300 PF00912 Transglycosylase CDO11_09305 PF00535 Glycosyl transferase family 2 CDO11_09310 PF00478 IMP dehydrogenase / GMP reductase domain CDO11_09310 PF00571 CBS domain CDO11_09330 PF03006 Haemolysin-III related CDO11_09335 PF16658 Class II release factor RF3, C-terminal domain CDO11_09335 PF00009 Elongation factor Tu GTP binding domain CDO11_09340 PF08525 Opacity-associated protein A N-terminal motif CDO11_09340 PF01476 LysM domain CDO11_09340 PF01551 Peptidase family M23 CDO11_09345 PF00561 alpha/beta hydrolase fold CDO11_09350 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_09360 PF03313 Serine dehydratase alpha chain CDO11_09360 PF03315 Serine dehydratase beta chain CDO11_09375 PF04264 YceI-like domain CDO11_09385 PF04264 YceI-like domain CDO11_09390 PF01627 Hpt domain CDO11_09390 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09390 PF00072 Response regulator receiver domain CDO11_09390 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_09390 PF00672 HAMP domain CDO11_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09395 PF00072 Response regulator receiver domain CDO11_09395 PF01627 Hpt domain CDO11_09395 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09395 PF00672 HAMP domain CDO11_09395 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_09400 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_09400 PF00672 HAMP domain CDO11_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09400 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09400 PF00072 Response regulator receiver domain CDO11_09400 PF01627 Hpt domain CDO11_09435 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_09445 PF07745 Glycosyl hydrolase family 53 CDO11_09455 PF06114 IrrE N-terminal-like domain CDO11_09455 PF01381 Helix-turn-helix CDO11_09455 PF09856 Predicted transcriptional regulator (DUF2083) CDO11_09460 PF00171 Aldehyde dehydrogenase family CDO11_09465 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_09465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_09465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_09475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_09475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_09475 PF00378 Enoyl-CoA hydratase/isomerase CDO11_09480 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_09480 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_09485 PF01545 Cation efflux family CDO11_09490 PF00378 Enoyl-CoA hydratase/isomerase CDO11_09490 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_09490 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_09495 PF04542 Sigma-70 region 2 CDO11_09495 PF08281 Sigma-70, region 4 CDO11_09505 PF13180 PDZ domain CDO11_09510 PF06421 GTP-binding protein LepA C-terminus CDO11_09510 PF00679 Elongation factor G C-terminus CDO11_09510 PF00009 Elongation factor Tu GTP binding domain CDO11_09510 PF03144 Elongation factor Tu domain 2 CDO11_09515 PF10502 Signal peptidase, peptidase S26 CDO11_09525 PF14622 Ribonuclease-III-like CDO11_09525 PF00035 Double-stranded RNA binding motif CDO11_09530 PF01926 50S ribosome-binding GTPase CDO11_09530 PF07650 KH domain CDO11_09535 PF11967 Recombination protein O N terminal CDO11_09535 PF02565 Recombination protein O C terminal CDO11_09545 PF05958 tRNA (Uracil-5-)-methyltransferase CDO11_09565 PF05598 Transposase domain (DUF772) CDO11_09570 PF01323 DSBA-like thioredoxin domain CDO11_09575 PF01593 Flavin containing amine oxidoreductase CDO11_09580 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CDO11_09585 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_09595 PF01048 Phosphorylase superfamily CDO11_09600 PF00313 'Cold-shock' DNA-binding domain CDO11_09620 PF00270 DEAD/DEAH box helicase CDO11_09620 PF08494 DEAD/H associated CDO11_09620 PF00271 Helicase conserved C-terminal domain CDO11_09625 PF04679 ATP dependent DNA ligase C terminal region CDO11_09625 PF01068 ATP dependent DNA ligase domain CDO11_09625 PF04675 DNA ligase N terminus CDO11_09635 PF04675 DNA ligase N terminus CDO11_09635 PF01068 ATP dependent DNA ligase domain CDO11_09635 PF04679 ATP dependent DNA ligase C terminal region CDO11_09650 PF00990 Diguanylate cyclase, GGDEF domain CDO11_09650 PF00072 Response regulator receiver domain CDO11_09665 PF00108 Thiolase, N-terminal domain CDO11_09665 PF02803 Thiolase, C-terminal domain CDO11_09670 PF03797 Autotransporter beta-domain CDO11_09670 PF12951 Passenger-associated-transport-repeat CDO11_09670 PF00082 Subtilase family CDO11_09675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDO11_09675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO11_09685 PF01863 Protein of unknown function DUF45 CDO11_09690 PF07043 Protein of unknown function (DUF1328) CDO11_09700 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_09735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_09750 PF03831 PhnA domain CDO11_09750 PF08274 PhnA Zinc-Ribbon CDO11_09765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_09770 PF07690 Major Facilitator Superfamily CDO11_09830 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_09835 PF03706 Lysylphosphatidylglycerol synthase TM region CDO11_09835 PF09924 Uncharacterised conserved protein (DUF2156) CDO11_09845 PF01042 Endoribonuclease L-PSP CDO11_09890 PF04542 Sigma-70 region 2 CDO11_09890 PF04545 Sigma-70, region 4 CDO11_09910 PF04060 Putative Fe-S cluster CDO11_09920 PF09334 tRNA synthetases class I (M) CDO11_09920 PF01588 Putative tRNA binding domain CDO11_09940 PF00324 Amino acid permease CDO11_09945 PF02574 Homocysteine S-methyltransferase CDO11_09960 PF02592 Putative vitamin uptake transporter CDO11_09975 PF05598 Transposase domain (DUF772) CDO11_09990 PF00009 Elongation factor Tu GTP binding domain CDO11_09995 PF00009 Elongation factor Tu GTP binding domain CDO11_10065 PF00593 TonB dependent receptor CDO11_10065 PF07715 TonB-dependent Receptor Plug Domain CDO11_10080 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDO11_10085 PF02811 PHP domain CDO11_10085 PF14579 Helix-hairpin-helix motif CDO11_10085 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO11_10085 PF01336 OB-fold nucleic acid binding domain CDO11_10085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO11_10090 PF01351 Ribonuclease HII CDO11_10095 PF02684 Lipid-A-disaccharide synthetase CDO11_10100 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDO11_10105 PF07977 FabA-like domain CDO11_10110 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDO11_10110 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10120 PF01103 Surface antigen CDO11_10120 PF07244 Surface antigen variable number repeat CDO11_10125 PF17820 PDZ domain CDO11_10125 PF02163 Peptidase family M50 CDO11_10130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDO11_10130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDO11_10130 PF13288 DXP reductoisomerase C-terminal domain CDO11_10140 PF01255 Putative undecaprenyl diphosphate synthase CDO11_10145 PF01765 Ribosome recycling factor CDO11_10150 PF00696 Amino acid kinase family CDO11_10160 PF00889 Elongation factor TS CDO11_10165 PF00318 Ribosomal protein S2 CDO11_10200 PF00557 Metallopeptidase family M24 CDO11_10205 PF08335 GlnD PII-uridylyltransferase CDO11_10205 PF01966 HD domain CDO11_10205 PF01909 Nucleotidyltransferase domain CDO11_10210 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10210 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_10210 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDO11_10220 PF03960 ArsC family CDO11_10230 PF07687 Peptidase dimerisation domain CDO11_10230 PF01546 Peptidase family M20/M25/M40 CDO11_10235 PF13537 Glutamine amidotransferase domain CDO11_10235 PF00733 Asparagine synthase CDO11_10250 PF00593 TonB dependent receptor CDO11_10250 PF07715 TonB-dependent Receptor Plug Domain CDO11_10255 PF01804 Penicillin amidase CDO11_10260 PF00210 Ferritin-like domain CDO11_10265 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_10265 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_10280 PF02321 Outer membrane efflux protein CDO11_10285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_10285 PF00529 HlyD membrane-fusion protein of T1SS CDO11_10290 PF07690 Major Facilitator Superfamily CDO11_10335 PF02780 Transketolase, C-terminal domain CDO11_10335 PF02779 Transketolase, pyrimidine binding domain CDO11_10335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDO11_10345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_10345 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDO11_10345 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_10345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_10360 PF01668 SmpB protein CDO11_10365 PF03364 Polyketide cyclase / dehydrase and lipid transport CDO11_10370 PF03658 RnfH family Ubiquitin CDO11_10380 PF04355 SmpA / OmlA family CDO11_10385 PF01475 Ferric uptake regulator family CDO11_10390 PF02463 RecF/RecN/SMC N terminal domain CDO11_10395 PF01628 HrcA protein C terminal domain CDO11_10395 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CDO11_10400 PF01025 GrpE CDO11_10405 PF00012 Hsp70 protein CDO11_10410 PF00226 DnaJ domain CDO11_10410 PF00684 DnaJ central domain CDO11_10410 PF01556 DnaJ C terminal domain CDO11_10420 PF08543 Phosphomethylpyrimidine kinase CDO11_10425 PF01817 Chorismate mutase type II CDO11_10425 PF02153 Prephenate dehydrogenase CDO11_10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_10440 PF03466 LysR substrate binding domain CDO11_10450 PF00005 ABC transporter CDO11_10450 PF00664 ABC transporter transmembrane region CDO11_10455 PF01205 Uncharacterized protein family UPF0029 CDO11_10460 PF03641 Possible lysine decarboxylase CDO11_10465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_10465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_10470 PF02817 e3 binding domain CDO11_10470 PF00364 Biotin-requiring enzyme CDO11_10470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_10475 PF00676 Dehydrogenase E1 component CDO11_10475 PF16078 2-oxoglutarate dehydrogenase N-terminus CDO11_10475 PF16870 2-oxoglutarate dehydrogenase C-terminal CDO11_10475 PF02779 Transketolase, pyrimidine binding domain CDO11_10485 PF08007 Cupin superfamily protein CDO11_10505 PF08328 Adenylosuccinate lyase C-terminal CDO11_10505 PF00206 Lyase CDO11_10525 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_10545 PF10415 Fumarase C C-terminus CDO11_10545 PF00206 Lyase CDO11_10575 PF00005 ABC transporter CDO11_10580 PF00392 Bacterial regulatory proteins, gntR family CDO11_10590 PF00255 Glutathione peroxidase CDO11_10595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_10595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_10600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_10600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_10600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_10605 PF04102 SlyX CDO11_10625 PF07690 Major Facilitator Superfamily CDO11_10630 PF00294 pfkB family carbohydrate kinase CDO11_10640 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO11_10640 PF02574 Homocysteine S-methyltransferase CDO11_10640 PF02310 B12 binding domain CDO11_10640 PF00809 Pterin binding enzyme CDO11_10640 PF02607 B12 binding domain CDO11_10645 PF00809 Pterin binding enzyme CDO11_10645 PF02574 Homocysteine S-methyltransferase CDO11_10650 PF01209 ubiE/COQ5 methyltransferase family CDO11_10655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_10655 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_10655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_10685 PF00575 S1 RNA binding domain CDO11_10685 PF17876 Cold shock domain CDO11_10685 PF08461 Ribonuclease R winged-helix domain CDO11_10685 PF08206 Ribonuclease B OB domain CDO11_10685 PF00773 RNB domain CDO11_10705 PF00588 SpoU rRNA Methylase family CDO11_10705 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_10710 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_10725 PF05598 Transposase domain (DUF772) CDO11_10725 PF01609 Transposase DDE domain CDO11_10745 PF00872 Transposase, Mutator family CDO11_10755 PF00313 'Cold-shock' DNA-binding domain CDO11_10760 PF00561 alpha/beta hydrolase fold CDO11_10770 PF01609 Transposase DDE domain CDO11_10770 PF05598 Transposase domain (DUF772) CDO11_10780 PF05598 Transposase domain (DUF772) CDO11_10780 PF01609 Transposase DDE domain CDO11_10830 PF05598 Transposase domain (DUF772) CDO11_10830 PF01609 Transposase DDE domain CDO11_10840 PF05598 Transposase domain (DUF772) CDO11_10855 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_10860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_10860 PF02403 Seryl-tRNA synthetase N-terminal domain CDO11_10880 PF05598 Transposase domain (DUF772) CDO11_10880 PF01609 Transposase DDE domain CDO11_10885 PF02525 Flavodoxin-like fold CDO11_10890 PF03466 LysR substrate binding domain CDO11_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_10940 PF03377 TAL effector repeat CDO11_10970 PF03079 ARD/ARD' family CDO11_10975 PF00596 Class II Aldolase and Adducin N-terminal domain CDO11_10980 PF13520 Amino acid permease CDO11_10985 PF13520 Amino acid permease CDO11_10995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_10995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_11000 PF02913 FAD linked oxidases, C-terminal domain CDO11_11000 PF01565 FAD binding domain CDO11_11015 PF13276 HTH-like domain CDO11_11015 PF13683 Integrase core domain CDO11_11025 PF03918 Cytochrome C biogenesis protein CDO11_11030 PF08534 Redoxin CDO11_11035 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDO11_11035 PF01578 Cytochrome C assembly protein CDO11_11040 PF03100 CcmE CDO11_11050 PF01578 Cytochrome C assembly protein CDO11_11055 PF03379 CcmB protein CDO11_11060 PF00005 ABC transporter CDO11_11065 PF00155 Aminotransferase class I and II CDO11_11070 PF00795 Carbon-nitrogen hydrolase CDO11_11090 PF01479 S4 domain CDO11_11090 PF00849 RNA pseudouridylate synthase CDO11_11095 PF04079 Segregation and condensation complex subunit ScpB CDO11_11100 PF02616 Segregation and condensation protein ScpA CDO11_11105 PF03795 YCII-related domain CDO11_11115 PF00356 Bacterial regulatory proteins, lacI family CDO11_11135 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_11140 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_11160 PF00795 Carbon-nitrogen hydrolase CDO11_11170 PF04371 Porphyromonas-type peptidyl-arginine deiminase CDO11_11180 PF00444 Ribosomal protein L36 CDO11_11185 PF02224 Cytidylate kinase CDO11_11190 PF00575 S1 RNA binding domain CDO11_11195 PF00216 Bacterial DNA-binding protein CDO11_11205 PF18073 Rubredoxin metal binding domain CDO11_11210 PF00953 Glycosyl transferase family 4 CDO11_11215 PF02719 Polysaccharide biosynthesis protein CDO11_11220 PF00483 Nucleotidyl transferase CDO11_11240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDO11_11240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDO11_11245 PF00478 IMP dehydrogenase / GMP reductase domain CDO11_11245 PF00571 CBS domain CDO11_11250 PF00958 GMP synthase C terminal domain CDO11_11250 PF02540 NAD synthase CDO11_11250 PF00117 Glutamine amidotransferase class-I CDO11_11255 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CDO11_11260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_11260 PF00361 Proton-conducting membrane transporter CDO11_11260 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CDO11_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_11265 PF03466 LysR substrate binding domain CDO11_11290 PF03601 Conserved hypothetical protein 698 CDO11_11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_11295 PF03466 LysR substrate binding domain CDO11_11310 PF00072 Response regulator receiver domain CDO11_11320 PF01566 Natural resistance-associated macrophage protein CDO11_11325 PF01325 Iron dependent repressor, N-terminal DNA binding domain CDO11_11325 PF02742 Iron dependent repressor, metal binding and dimerisation domain CDO11_11330 PF14437 MafB19-like deaminase CDO11_11335 PF00929 Exonuclease CDO11_11340 PF00924 Mechanosensitive ion channel CDO11_11340 PF05552 Conserved TM helix CDO11_11345 PF00391 PEP-utilising enzyme, mobile domain CDO11_11345 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDO11_11345 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_11350 PF03618 Kinase/pyrophosphorylase CDO11_11385 PF01066 CDP-alcohol phosphatidyltransferase CDO11_11395 PF00561 alpha/beta hydrolase fold CDO11_11410 PF01266 FAD dependent oxidoreductase CDO11_11410 PF00355 Rieske [2Fe-2S] domain CDO11_11420 PF16921 Tex protein YqgF-like domain CDO11_11420 PF09371 Tex-like protein N-terminal domain CDO11_11420 PF00575 S1 RNA binding domain CDO11_11420 PF17674 HHH domain CDO11_11435 PF00072 Response regulator receiver domain CDO11_11445 PF04551 GcpE protein CDO11_11450 PF01569 PAP2 superfamily CDO11_11460 PF07690 Major Facilitator Superfamily CDO11_11475 PF01177 Asp/Glu/Hydantoin racemase CDO11_11485 PF00892 EamA-like transporter family CDO11_11490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDO11_11490 PF01565 FAD binding domain CDO11_11495 PF01180 Dihydroorotate dehydrogenase CDO11_11510 PF00171 Aldehyde dehydrogenase family CDO11_11520 PF03073 TspO/MBR family CDO11_11525 PF00696 Amino acid kinase family CDO11_11525 PF13840 ACT domain CDO11_11525 PF00742 Homoserine dehydrogenase CDO11_11525 PF03447 Homoserine dehydrogenase, NAD binding domain CDO11_11525 PF01842 ACT domain CDO11_11530 PF08544 GHMP kinases C terminal CDO11_11530 PF00288 GHMP kinases N terminal domain CDO11_11545 PF14821 Threonine synthase N terminus CDO11_11545 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_11560 PF03129 Anticodon binding domain CDO11_11560 PF13393 Histidyl-tRNA synthetase CDO11_11580 PF08029 HisG, C-terminal domain CDO11_11580 PF01634 ATP phosphoribosyltransferase CDO11_11585 PF00815 Histidinol dehydrogenase CDO11_11590 PF00155 Aminotransferase class I and II CDO11_11595 PF00475 Imidazoleglycerol-phosphate dehydratase CDO11_11600 PF00117 Glutamine amidotransferase class-I CDO11_11605 PF00977 Histidine biosynthesis protein CDO11_11610 PF00977 Histidine biosynthesis protein CDO11_11615 PF01502 Phosphoribosyl-AMP cyclohydrolase CDO11_11615 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDO11_11625 PF03377 TAL effector repeat CDO11_11655 PF01043 SecA preprotein cross-linking domain CDO11_11655 PF07517 SecA DEAD-like domain CDO11_11655 PF07516 SecA Wing and Scaffold domain CDO11_11655 PF02810 SEC-C motif CDO11_11760 PF02303 Helix-destabilising protein CDO11_11795 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_11805 PF01609 Transposase DDE domain CDO11_11805 PF05598 Transposase domain (DUF772) CDO11_11825 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_11860 PF03377 TAL effector repeat CDO11_11865 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_11895 PF13333 Integrase core domain CDO11_11895 PF00665 Integrase core domain CDO11_11895 PF13276 HTH-like domain CDO11_11935 PF00872 Transposase, Mutator family CDO11_11945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_11965 PF01066 CDP-alcohol phosphatidyltransferase CDO11_11970 PF01541 GIY-YIG catalytic domain CDO11_11970 PF02151 UvrB/uvrC motif CDO11_11970 PF08459 UvrC Helix-hairpin-helix N-terminal CDO11_11980 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDO11_11985 PF02348 Cytidylyltransferase CDO11_11990 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDO11_11995 PF00664 ABC transporter transmembrane region CDO11_11995 PF00005 ABC transporter CDO11_12005 PF01618 MotA/TolQ/ExbB proton channel family CDO11_12010 PF03772 Competence protein CDO11_12010 PF00753 Metallo-beta-lactamase superfamily CDO11_12030 PF00005 ABC transporter CDO11_12035 PF02687 FtsX-like permease family CDO11_12035 PF12704 MacB-like periplasmic core domain CDO11_12045 PF03937 Flavinator of succinate dehydrogenase CDO11_12050 PF13085 2Fe-2S iron-sulfur cluster binding domain CDO11_12060 PF02910 Fumarate reductase flavoprotein C-term CDO11_12060 PF00890 FAD binding domain CDO11_12065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_12070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_12080 PF01571 Aminomethyltransferase folate-binding domain CDO11_12090 PF00005 ABC transporter CDO11_12090 PF17912 MalK OB fold domain CDO11_12095 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_12095 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_12105 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CDO11_12110 PF00920 Dehydratase family CDO11_12115 PF01081 KDPG and KHG aldolase CDO11_12120 PF05598 Transposase domain (DUF772) CDO11_12130 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_12155 PF00072 Response regulator receiver domain CDO11_12155 PF01627 Hpt domain CDO11_12155 PF00512 His Kinase A (phospho-acceptor) domain CDO11_12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_12155 PF00672 HAMP domain CDO11_12155 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_12170 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_12190 PF08448 PAS fold CDO11_12190 PF00990 Diguanylate cyclase, GGDEF domain CDO11_12210 PF02253 Phospholipase A1 CDO11_12230 PF05681 Fumarate hydratase (Fumerase) CDO11_12230 PF05683 Fumarase C-terminus CDO11_12235 PF00005 ABC transporter CDO11_12240 PF00175 Oxidoreductase NAD-binding domain CDO11_12240 PF00970 Oxidoreductase FAD-binding domain CDO11_12245 PF00255 Glutathione peroxidase CDO11_12270 PF08281 Sigma-70, region 4 CDO11_12270 PF04542 Sigma-70 region 2 CDO11_12280 PF12802 MarR family CDO11_12315 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_12315 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_12315 PF14310 Fibronectin type III-like domain CDO11_12330 PF00990 Diguanylate cyclase, GGDEF domain CDO11_12330 PF00360 Phytochrome region CDO11_12330 PF00563 EAL domain CDO11_12330 PF01590 GAF domain CDO11_12340 PF00474 Sodium:solute symporter family CDO11_12350 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_12350 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_12350 PF14310 Fibronectin type III-like domain CDO11_12375 PF00342 Phosphoglucose isomerase CDO11_12380 PF02261 Aspartate decarboxylase CDO11_12385 PF02569 Pantoate-beta-alanine ligase CDO11_12390 PF02548 Ketopantoate hydroxymethyltransferase CDO11_12395 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_12400 PF01743 Poly A polymerase head domain CDO11_12400 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_12400 PF12626 Polymerase A arginine-rich C-terminus CDO11_12410 PF02649 Type I GTP cyclohydrolase folE2 CDO11_12415 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_12430 PF05598 Transposase domain (DUF772) CDO11_12435 PF00082 Subtilase family CDO11_12435 PF03797 Autotransporter beta-domain CDO11_12445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_12450 PF00873 AcrB/AcrD/AcrF family CDO11_12455 PF02321 Outer membrane efflux protein CDO11_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_12460 PF00512 His Kinase A (phospho-acceptor) domain CDO11_12460 PF08448 PAS fold CDO11_12460 PF13426 PAS domain CDO11_12460 PF00072 Response regulator receiver domain CDO11_12465 PF00072 Response regulator receiver domain CDO11_12465 PF00196 Bacterial regulatory proteins, luxR family CDO11_12470 PF12951 Passenger-associated-transport-repeat CDO11_12500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_12505 PF01842 ACT domain CDO11_12505 PF01817 Chorismate mutase type II CDO11_12505 PF00800 Prephenate dehydratase CDO11_12510 PF00266 Aminotransferase class-V CDO11_12515 PF00174 Oxidoreductase molybdopterin binding domain CDO11_12525 PF01794 Ferric reductase like transmembrane component CDO11_12550 PF07702 UTRA domain CDO11_12550 PF00392 Bacterial regulatory proteins, gntR family CDO11_12560 PF07969 Amidohydrolase family CDO11_12565 PF00221 Aromatic amino acid lyase CDO11_12575 PF01175 Urocanase Rossmann-like domain CDO11_12575 PF17391 Urocanase N-terminal domain CDO11_12575 PF17392 Urocanase C-terminal domain CDO11_12595 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_12595 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_12600 PF01008 Initiation factor 2 subunit family CDO11_12615 PF00152 tRNA synthetases class II (D, K and N) CDO11_12620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDO11_12620 PF12826 Helix-hairpin-helix motif CDO11_12620 PF01653 NAD-dependent DNA ligase adenylation domain CDO11_12620 PF03120 NAD-dependent DNA ligase OB-fold domain CDO11_12620 PF00533 BRCA1 C Terminus (BRCT) domain CDO11_12630 PF04354 ZipA, C-terminal FtsZ-binding domain CDO11_12635 PF02463 RecF/RecN/SMC N terminal domain CDO11_12640 PF01281 Ribosomal protein L9, N-terminal domain CDO11_12640 PF03948 Ribosomal protein L9, C-terminal domain CDO11_12645 PF01084 Ribosomal protein S18 CDO11_12650 PF01250 Ribosomal protein S6 CDO11_12655 PF01521 Iron-sulphur cluster biosynthesis CDO11_12660 PF01336 OB-fold nucleic acid binding domain CDO11_12660 PF00152 tRNA synthetases class II (D, K and N) CDO11_12685 PF00484 Carbonic anhydrase CDO11_12690 PF06052 3-hydroxyanthranilic acid dioxygenase CDO11_12700 PF00266 Aminotransferase class-V CDO11_12705 PF01494 FAD binding domain CDO11_12710 PF00929 Exonuclease CDO11_12710 PF08411 Exonuclease C-terminal CDO11_12720 PF00248 Aldo/keto reductase family CDO11_12735 PF01513 ATP-NAD kinase CDO11_12745 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_12745 PF02926 THUMP domain CDO11_12745 PF01170 Putative RNA methylase family UPF0020 CDO11_12785 PF00581 Rhodanese-like domain CDO11_12790 PF00293 NUDIX domain CDO11_12795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_12795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_12800 PF00378 Enoyl-CoA hydratase/isomerase CDO11_12810 PF00633 Helix-hairpin-helix motif CDO11_12810 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_12810 PF10576 Iron-sulfur binding domain of endonuclease III CDO11_12820 PF00484 Carbonic anhydrase CDO11_12825 PF05598 Transposase domain (DUF772) CDO11_12825 PF01609 Transposase DDE domain CDO11_12840 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_12855 PF12849 PBP superfamily domain CDO11_12860 PF12849 PBP superfamily domain CDO11_12865 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_12870 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_12875 PF00005 ABC transporter CDO11_12880 PF01895 PhoU domain CDO11_12890 PF00929 Exonuclease CDO11_12905 PF00872 Transposase, Mutator family CDO11_12925 PF00589 Phage integrase family CDO11_12925 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_12930 PF07549 SecD/SecF GG Motif CDO11_12930 PF02355 Protein export membrane protein CDO11_12935 PF02355 Protein export membrane protein CDO11_12935 PF13721 SecD export protein N-terminal TM region CDO11_12935 PF07549 SecD/SecF GG Motif CDO11_12940 PF02699 Preprotein translocase subunit CDO11_12945 PF01702 Queuine tRNA-ribosyltransferase CDO11_12950 PF02547 Queuosine biosynthesis protein CDO11_13020 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_13040 PF00037 4Fe-4S binding domain CDO11_13055 PF01467 Cytidylyltransferase-like CDO11_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13065 PF00183 Hsp90 protein CDO11_13080 PF00899 ThiF family CDO11_13115 PF01609 Transposase DDE domain CDO11_13115 PF05598 Transposase domain (DUF772) CDO11_13145 PF00994 Probable molybdopterin binding domain CDO11_13145 PF03454 MoeA C-terminal region (domain IV) CDO11_13145 PF03453 MoeA N-terminal region (domain I and II) CDO11_13150 PF01926 50S ribosome-binding GTPase CDO11_13150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDO11_13155 PF01011 PQQ enzyme repeat CDO11_13155 PF13360 PQQ-like domain CDO11_13165 PF13464 Domain of unknown function (DUF4115) CDO11_13175 PF04055 Radical SAM superfamily CDO11_13180 PF00334 Nucleoside diphosphate kinase CDO11_13190 PF00378 Enoyl-CoA hydratase/isomerase CDO11_13190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_13190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_13195 PF00108 Thiolase, N-terminal domain CDO11_13195 PF02803 Thiolase, C-terminal domain CDO11_13200 PF00654 Voltage gated chloride channel CDO11_13210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDO11_13220 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_13220 PF12002 MgsA AAA+ ATPase C terminal CDO11_13220 PF16193 AAA C-terminal domain CDO11_13235 PF03548 Outer membrane lipoprotein carrier protein LolA CDO11_13245 PF01580 FtsK/SpoIIIE family CDO11_13245 PF17854 FtsK alpha domain CDO11_13245 PF09397 Ftsk gamma domain CDO11_13245 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDO11_13250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_13270 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDO11_13275 PF01176 Translation initiation factor 1A / IF-1 CDO11_13280 PF07724 AAA domain (Cdc48 subfamily) CDO11_13280 PF17871 AAA lid domain CDO11_13280 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_13280 PF02861 Clp amino terminal domain, pathogenicity island component CDO11_13280 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_13285 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDO11_13290 PF00293 NUDIX domain CDO11_13300 PF04356 Protein of unknown function (DUF489) CDO11_13305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_13305 PF12729 Four helix bundle sensory module for signal transduction CDO11_13305 PF00672 HAMP domain CDO11_13320 PF08447 PAS fold CDO11_13320 PF00563 EAL domain CDO11_13320 PF00990 Diguanylate cyclase, GGDEF domain CDO11_13320 PF08448 PAS fold CDO11_13325 PF07730 Histidine kinase CDO11_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13330 PF00563 EAL domain CDO11_13330 PF00990 Diguanylate cyclase, GGDEF domain CDO11_13330 PF03707 Bacterial signalling protein N terminal repeat CDO11_13335 PF13426 PAS domain CDO11_13335 PF00512 His Kinase A (phospho-acceptor) domain CDO11_13335 PF00989 PAS fold CDO11_13335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13335 PF13188 PAS domain CDO11_13355 PF01584 CheW-like domain CDO11_13355 PF00072 Response regulator receiver domain CDO11_13365 PF00460 Flagella basal body rod protein CDO11_13365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13370 PF03963 Flagellar hook capping protein - N-terminal region CDO11_13375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13375 PF07559 Flagellar basal body protein FlaE CDO11_13375 PF00460 Flagella basal body rod protein CDO11_13380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13380 PF00460 Flagella basal body rod protein CDO11_13390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13390 PF00460 Flagella basal body rod protein CDO11_13395 PF02107 Flagellar L-ring protein CDO11_13400 PF02119 Flagellar P-ring protein CDO11_13405 PF10135 Rod binding protein CDO11_13405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDO11_13410 PF07196 Flagellin hook IN motif CDO11_13410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13420 PF00669 Bacterial flagellin N-terminal helical region CDO11_13420 PF00700 Bacterial flagellin C-terminal helical region CDO11_13425 PF07196 Flagellin hook IN motif CDO11_13425 PF07195 Flagellar hook-associated protein 2 C-terminus CDO11_13425 PF02465 Flagellar hook-associated protein 2 N-terminus CDO11_13430 PF02561 Flagellar protein FliS CDO11_13445 PF00196 Bacterial regulatory proteins, luxR family CDO11_13445 PF00072 Response regulator receiver domain CDO11_13450 PF04963 Sigma-54 factor, core binding domain CDO11_13450 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO11_13450 PF04552 Sigma-54, DNA binding domain CDO11_13455 PF01339 CheB methylesterase CDO11_13455 PF00072 Response regulator receiver domain CDO11_13460 PF00158 Sigma-54 interaction domain CDO11_13460 PF00072 Response regulator receiver domain CDO11_13460 PF02954 Bacterial regulatory protein, Fis family CDO11_13465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_13475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_13475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_13510 PF00535 Glycosyl transferase family 2 CDO11_13510 PF00534 Glycosyl transferases group 1 CDO11_13525 PF02049 Flagellar hook-basal body complex protein FliE CDO11_13530 PF01514 Secretory protein of YscJ/FliF family CDO11_13530 PF08345 Flagellar M-ring protein C-terminal CDO11_13535 PF14841 FliG middle domain CDO11_13535 PF01706 FliG C-terminal domain CDO11_13535 PF14842 FliG N-terminal domain CDO11_13545 PF18269 T3SS EscN ATPase C-terminal domain CDO11_13545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_13565 PF02154 Flagellar motor switch protein FliM CDO11_13565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO11_13570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO11_13575 PF04347 Flagellar biosynthesis protein, FliO CDO11_13580 PF00813 FliP family CDO11_13590 PF01313 Bacterial export proteins, family 3 CDO11_13595 PF01311 Bacterial export proteins, family 1 CDO11_13600 PF00563 EAL domain CDO11_13600 PF03707 Bacterial signalling protein N terminal repeat CDO11_13600 PF00990 Diguanylate cyclase, GGDEF domain CDO11_13600 PF13188 PAS domain CDO11_13605 PF13188 PAS domain CDO11_13605 PF00563 EAL domain CDO11_13605 PF00990 Diguanylate cyclase, GGDEF domain CDO11_13605 PF03707 Bacterial signalling protein N terminal repeat CDO11_13610 PF03707 Bacterial signalling protein N terminal repeat CDO11_13610 PF00990 Diguanylate cyclase, GGDEF domain CDO11_13610 PF00563 EAL domain CDO11_13615 PF01312 FlhB HrpN YscU SpaS Family CDO11_13620 PF00771 FHIPEP family CDO11_13630 PF00448 SRP54-type protein, GTPase domain CDO11_13635 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_13640 PF04542 Sigma-70 region 2 CDO11_13640 PF04539 Sigma-70 region 3 CDO11_13640 PF04545 Sigma-70, region 4 CDO11_13645 PF00072 Response regulator receiver domain CDO11_13650 PF04344 Chemotaxis phosphatase, CheZ CDO11_13655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13655 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_13655 PF01627 Hpt domain CDO11_13655 PF07194 P2 response regulator binding domain CDO11_13655 PF01584 CheW-like domain CDO11_13690 PF05598 Transposase domain (DUF772) CDO11_13690 PF01609 Transposase DDE domain CDO11_13705 PF03527 RHS protein CDO11_13705 PF05593 RHS Repeat CDO11_13715 PF05598 Transposase domain (DUF772) CDO11_13715 PF01609 Transposase DDE domain CDO11_13725 PF05598 Transposase domain (DUF772) CDO11_13725 PF01609 Transposase DDE domain CDO11_13760 PF00034 Cytochrome c CDO11_13820 PF05598 Transposase domain (DUF772) CDO11_13820 PF01609 Transposase DDE domain CDO11_13830 PF00005 ABC transporter CDO11_13830 PF00664 ABC transporter transmembrane region CDO11_13845 PF01609 Transposase DDE domain CDO11_13845 PF05598 Transposase domain (DUF772) CDO11_13875 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO11_13875 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO11_13880 PF00171 Aldehyde dehydrogenase family CDO11_13885 PF01472 PUA domain CDO11_13885 PF00696 Amino acid kinase family CDO11_13900 PF00206 Lyase CDO11_13905 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_13915 PF00696 Amino acid kinase family CDO11_13915 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase CDO11_13920 PF07687 Peptidase dimerisation domain CDO11_13920 PF01546 Peptidase family M20/M25/M40 CDO11_13930 PF00764 Arginosuccinate synthase CDO11_13935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_13935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_13945 PF09190 DALR domain CDO11_13945 PF01406 tRNA synthetases class I (C) catalytic domain CDO11_13950 PF02657 Fe-S metabolism associated domain CDO11_13965 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_13970 PF01809 Putative membrane protein insertion efficiency factor CDO11_13975 PF01979 Amidohydrolase family CDO11_13980 PF01551 Peptidase family M23 CDO11_13980 PF08460 Bacterial SH3 domain CDO11_13990 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_14015 PF01609 Transposase DDE domain CDO11_14015 PF05598 Transposase domain (DUF772) CDO11_14025 PF01095 Pectinesterase CDO11_14040 PF00295 Glycosyl hydrolases family 28 CDO11_14050 PF13419 Haloacid dehalogenase-like hydrolase CDO11_14060 PF01979 Amidohydrolase family CDO11_14070 PF01132 Elongation factor P (EF-P) OB domain CDO11_14070 PF09285 Elongation factor P, C-terminal CDO11_14070 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_14075 PF04055 Radical SAM superfamily CDO11_14080 PF00563 EAL domain CDO11_14080 PF03707 Bacterial signalling protein N terminal repeat CDO11_14080 PF00990 Diguanylate cyclase, GGDEF domain CDO11_14080 PF13188 PAS domain CDO11_14090 PF00588 SpoU rRNA Methylase family CDO11_14095 PF00459 Inositol monophosphatase family CDO11_14100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_14100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_14105 PF00545 ribonuclease CDO11_14130 PF00271 Helicase conserved C-terminal domain CDO11_14130 PF00270 DEAD/DEAH box helicase CDO11_14130 PF03880 DbpA RNA binding domain CDO11_14135 PF00156 Phosphoribosyl transferase domain CDO11_14140 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDO11_14150 PF02798 Glutathione S-transferase, N-terminal domain CDO11_14150 PF14497 Glutathione S-transferase, C-terminal domain CDO11_14155 PF00313 'Cold-shock' DNA-binding domain CDO11_14160 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDO11_14165 PF07152 YaeQ protein CDO11_14175 PF00072 Response regulator receiver domain CDO11_14175 PF00563 EAL domain CDO11_14175 PF00990 Diguanylate cyclase, GGDEF domain CDO11_14180 PF01435 Peptidase family M48 CDO11_14185 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_14190 PF00106 short chain dehydrogenase CDO11_14195 PF05233 PHB accumulation regulatory domain CDO11_14195 PF07879 PHB/PHA accumulation regulator DNA-binding domain CDO11_14215 PF01119 DNA mismatch repair protein, C-terminal domain CDO11_14215 PF08676 MutL C terminal dimerisation domain CDO11_14220 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_14220 PF11741 AMIN domain CDO11_14225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDO11_14230 PF03853 YjeF-related protein N-terminus CDO11_14230 PF01256 Carbohydrate kinase CDO11_14235 PF08331 Domain of unknown function (DUF1730) CDO11_14245 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_14250 PF02601 Exonuclease VII, large subunit CDO11_14250 PF13742 OB-fold nucleic acid binding domain CDO11_14265 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_14280 PF00570 HRDC domain CDO11_14280 PF01612 3'-5' exonuclease CDO11_14285 PF01068 ATP dependent DNA ligase domain CDO11_14285 PF04679 ATP dependent DNA ligase C terminal region CDO11_14285 PF13298 DNA polymerase Ligase (LigD) CDO11_14335 PF01619 Proline dehydrogenase CDO11_14335 PF00171 Aldehyde dehydrogenase family CDO11_14335 PF14850 DNA-binding domain of Proline dehydrogenase CDO11_14335 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDO11_14350 PF00872 Transposase, Mutator family CDO11_14390 PF04386 Stringent starvation protein B CDO11_14395 PF02798 Glutathione S-transferase, N-terminal domain CDO11_14395 PF00043 Glutathione S-transferase, C-terminal domain CDO11_14400 PF02167 Cytochrome C1 family CDO11_14405 PF00033 Cytochrome b/b6/petB CDO11_14405 PF00032 Cytochrome b(C-terminal)/b6/petD CDO11_14410 PF00355 Rieske [2Fe-2S] domain CDO11_14410 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDO11_14415 PF01464 Transglycosylase SLT domain CDO11_14435 PF04055 Radical SAM superfamily CDO11_14435 PF01938 TRAM domain CDO11_14435 PF00919 Uncharacterized protein family UPF0004 CDO11_14440 PF02562 PhoH-like protein CDO11_14450 PF02130 Uncharacterized protein family UPF0054 CDO11_14460 PF03471 Transporter associated domain CDO11_14460 PF00571 CBS domain CDO11_14475 PF00171 Aldehyde dehydrogenase family CDO11_14490 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_14495 PF08402 TOBE domain CDO11_14495 PF00005 ABC transporter CDO11_14500 PF02321 Outer membrane efflux protein CDO11_14505 PF07690 Major Facilitator Superfamily CDO11_14510 PF13533 Biotin-lipoyl like CDO11_14520 PF00120 Glutamine synthetase, catalytic domain CDO11_14540 PF00990 Diguanylate cyclase, GGDEF domain CDO11_14540 PF00072 Response regulator receiver domain CDO11_14545 PF00083 Sugar (and other) transporter CDO11_14545 PF07690 Major Facilitator Superfamily CDO11_14555 PF00384 Molybdopterin oxidoreductase CDO11_14560 PF02634 FdhD/NarQ family CDO11_14565 PF07690 Major Facilitator Superfamily CDO11_14575 PF00202 Aminotransferase class-III CDO11_14580 PF00005 ABC transporter CDO11_14590 PF04286 Protein of unknown function (DUF445) CDO11_14595 PF00072 Response regulator receiver domain CDO11_14595 PF00672 HAMP domain CDO11_14595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_14595 PF01627 Hpt domain CDO11_14595 PF00512 His Kinase A (phospho-acceptor) domain CDO11_14595 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO11_14600 PF00072 Response regulator receiver domain CDO11_14605 PF05598 Transposase domain (DUF772) CDO11_14605 PF01609 Transposase DDE domain CDO11_14625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_14625 PF00529 HlyD membrane-fusion protein of T1SS CDO11_14630 PF00873 AcrB/AcrD/AcrF family CDO11_14650 PF00356 Bacterial regulatory proteins, lacI family CDO11_14655 PF00391 PEP-utilising enzyme, mobile domain CDO11_14655 PF00381 PTS HPr component phosphorylation site CDO11_14655 PF05524 PEP-utilising enzyme, N-terminal CDO11_14655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_14655 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_14660 PF00294 pfkB family carbohydrate kinase CDO11_14665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDO11_14680 PF05598 Transposase domain (DUF772) CDO11_14680 PF01609 Transposase DDE domain CDO11_14745 PF16671 Actin cross-linking domain CDO11_14745 PF04717 Type VI secretion system, phage-baseplate injector CDO11_14755 PF03377 TAL effector repeat CDO11_14760 PF16671 Actin cross-linking domain CDO11_14760 PF04717 Type VI secretion system, phage-baseplate injector CDO11_14820 PF05598 Transposase domain (DUF772) CDO11_14820 PF01609 Transposase DDE domain CDO11_14850 PF00593 TonB dependent receptor CDO11_14850 PF07715 TonB-dependent Receptor Plug Domain CDO11_14860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_14860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_14880 PF01618 MotA/TolQ/ExbB proton channel family CDO11_14885 PF00691 OmpA family CDO11_14885 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDO11_14890 PF13614 AAA domain CDO11_14895 PF01584 CheW-like domain CDO11_14905 PF00072 Response regulator receiver domain CDO11_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_14910 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_14910 PF09078 CheY binding CDO11_14910 PF01627 Hpt domain CDO11_14910 PF01584 CheW-like domain CDO11_14925 PF00672 HAMP domain CDO11_14925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14925 PF02203 Tar ligand binding domain homologue CDO11_14940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14940 PF00672 HAMP domain CDO11_14940 PF02203 Tar ligand binding domain homologue CDO11_14950 PF02203 Tar ligand binding domain homologue CDO11_14950 PF00672 HAMP domain CDO11_14950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14960 PF00672 HAMP domain CDO11_14960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14960 PF02203 Tar ligand binding domain homologue CDO11_14970 PF02203 Tar ligand binding domain homologue CDO11_14970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14970 PF00672 HAMP domain CDO11_14975 PF00672 HAMP domain CDO11_14975 PF02203 Tar ligand binding domain homologue CDO11_14975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14990 PF07238 PilZ domain CDO11_14990 PF07317 Flagellar regulator YcgR CDO11_14995 PF01584 CheW-like domain CDO11_15015 PF00672 HAMP domain CDO11_15015 PF02203 Tar ligand binding domain homologue CDO11_15015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_15020 PF03705 CheR methyltransferase, all-alpha domain CDO11_15020 PF01739 CheR methyltransferase, SAM binding domain CDO11_15025 PF03975 CheD chemotactic sensory transduction CDO11_15030 PF01339 CheB methylesterase CDO11_15030 PF00072 Response regulator receiver domain CDO11_15035 PF00563 EAL domain CDO11_15035 PF03707 Bacterial signalling protein N terminal repeat CDO11_15035 PF00990 Diguanylate cyclase, GGDEF domain CDO11_15045 PF00561 alpha/beta hydrolase fold CDO11_15050 PF00330 Aconitase family (aconitate hydratase) CDO11_15050 PF11791 Aconitate B N-terminal domain CDO11_15050 PF06434 Aconitate hydratase 2 N-terminus CDO11_15065 PF00694 Aconitase C-terminal domain CDO11_15065 PF00330 Aconitase family (aconitate hydratase) CDO11_15075 PF13193 AMP-binding enzyme C-terminal domain CDO11_15075 PF00501 AMP-binding enzyme CDO11_15080 PF00378 Enoyl-CoA hydratase/isomerase CDO11_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15085 PF00512 His Kinase A (phospho-acceptor) domain CDO11_15085 PF01627 Hpt domain CDO11_15085 PF00072 Response regulator receiver domain CDO11_15095 PF00072 Response regulator receiver domain CDO11_15100 PF01336 OB-fold nucleic acid binding domain CDO11_15100 PF00152 tRNA synthetases class II (D, K and N) CDO11_15105 PF03462 PCRF domain CDO11_15105 PF00472 RF-1 domain CDO11_15125 PF13542 Helix-turn-helix domain of transposase family ISL3 CDO11_15125 PF01610 Transposase CDO11_15125 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CDO11_15155 PF02272 DHHA1 domain CDO11_15155 PF17768 RecJ OB domain CDO11_15155 PF01368 DHH family CDO11_15165 PF03449 Transcription elongation factor, N-terminal CDO11_15165 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_15170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_15170 PF02142 MGS-like domain CDO11_15170 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO11_15180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDO11_15180 PF00117 Glutamine amidotransferase class-I CDO11_15185 PF01113 Dihydrodipicolinate reductase, N-terminus CDO11_15185 PF05173 Dihydrodipicolinate reductase, C-terminus CDO11_15195 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_15200 PF03473 MOSC domain CDO11_15200 PF03475 3-alpha domain CDO11_15205 PF00155 Aminotransferase class I and II CDO11_15225 PF02421 Ferrous iron transport protein B CDO11_15225 PF07664 Ferrous iron transport protein B C terminus CDO11_15225 PF07670 Nucleoside recognition CDO11_15235 PF00378 Enoyl-CoA hydratase/isomerase CDO11_15245 PF00682 HMGL-like CDO11_15250 PF00106 short chain dehydrogenase CDO11_15255 PF01132 Elongation factor P (EF-P) OB domain CDO11_15255 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_15255 PF09285 Elongation factor P, C-terminal CDO11_15275 PF00083 Sugar (and other) transporter CDO11_15285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO11_15285 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO11_15295 PF01055 Glycosyl hydrolases family 31 CDO11_15295 PF16338 Domain of unknown function (DUF4968) CDO11_15295 PF17137 Domain of unknown function (DUF5110) CDO11_15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15305 PF03466 LysR substrate binding domain CDO11_15310 PF01081 KDPG and KHG aldolase CDO11_15315 PF13378 Enolase C-terminal domain-like CDO11_15315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_15320 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_15325 PF05035 2-keto-3-deoxy-galactonokinase CDO11_15330 PF11953 Domain of unknown function (DUF3470) CDO11_15330 PF00037 4Fe-4S binding domain CDO11_15340 PF00701 Dihydrodipicolinate synthetase family CDO11_15355 PF00578 AhpC/TSA family CDO11_15360 PF02562 PhoH-like protein CDO11_15360 PF13638 PIN domain CDO11_15370 PF08543 Phosphomethylpyrimidine kinase CDO11_15400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15400 PF03466 LysR substrate binding domain CDO11_15405 PF02678 Pirin CDO11_15405 PF17954 Quercetinase C-terminal cupin domain CDO11_15430 PF00772 DnaB-like helicase N terminal domain CDO11_15430 PF03796 DnaB-like helicase C terminal domain CDO11_15450 PF02599 Global regulator protein family CDO11_15455 PF02272 DHHA1 domain CDO11_15455 PF01411 tRNA synthetases class II (A) CDO11_15455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_15460 PF02631 RecX family CDO11_15470 PF00154 recA bacterial DNA recombination protein CDO11_15475 PF00717 Peptidase S24-like CDO11_15475 PF01726 LexA DNA binding domain CDO11_15480 PF03109 ABC1 family CDO11_15485 PF02464 Competence-damaged protein CDO11_15490 PF16360 GTP-binding GTPase Middle Region CDO11_15490 PF13167 GTP-binding GTPase N-terminal CDO11_15490 PF01926 50S ribosome-binding GTPase CDO11_15495 PF17209 Hfq protein CDO11_15505 PF00809 Pterin binding enzyme CDO11_15510 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_15510 PF01434 Peptidase family M41 CDO11_15510 PF17862 AAA+ lid domain CDO11_15510 PF06480 FtsH Extracellular CDO11_15515 PF01728 FtsJ-like methyltransferase CDO11_15520 PF01985 CRS1 / YhbY (CRM) domain CDO11_15530 PF01476 LysM domain CDO11_15530 PF01551 Peptidase family M23 CDO11_15535 PF09335 SNARE associated Golgi protein CDO11_15545 PF01975 Survival protein SurE CDO11_15550 PF01713 Smr domain CDO11_15555 PF01142 tRNA pseudouridine synthase D (TruD) CDO11_15560 PF02542 YgbB family CDO11_15570 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDO11_15575 PF04977 Septum formation initiator CDO11_15580 PF03952 Enolase, N-terminal domain CDO11_15580 PF00113 Enolase, C-terminal TIM barrel domain CDO11_15590 PF00793 DAHP synthetase I family CDO11_15595 PF00117 Glutamine amidotransferase class-I CDO11_15595 PF06418 CTP synthase N-terminus CDO11_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15605 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_15605 PF01751 Toprim domain CDO11_15605 PF00204 DNA gyrase B CDO11_15620 PF02698 DUF218 domain CDO11_15625 PF01384 Phosphate transporter family CDO11_15640 PF01595 Cyclin M transmembrane N-terminal domain CDO11_15640 PF03471 Transporter associated domain CDO11_15640 PF00571 CBS domain CDO11_15655 PF00296 Luciferase-like monooxygenase CDO11_15670 PF07690 Major Facilitator Superfamily CDO11_15680 PF00664 ABC transporter transmembrane region CDO11_15680 PF00005 ABC transporter CDO11_15685 PF00005 ABC transporter CDO11_15705 PF13579 Glycosyl transferase 4-like domain CDO11_15705 PF00534 Glycosyl transferases group 1 CDO11_15725 PF08241 Methyltransferase domain CDO11_15740 PF00535 Glycosyl transferase family 2 CDO11_15745 PF01943 Polysaccharide biosynthesis protein CDO11_15750 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_15770 PF05523 WxcM-like, C-terminal CDO11_15785 PF00034 Cytochrome c CDO11_15795 PF04542 Sigma-70 region 2 CDO11_15795 PF08281 Sigma-70, region 4 CDO11_15805 PF00082 Subtilase family CDO11_15810 PF01578 Cytochrome C assembly protein CDO11_15815 PF04995 Heme exporter protein D (CcmD) CDO11_15820 PF03100 CcmE CDO11_15825 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDO11_15825 PF01578 Cytochrome C assembly protein CDO11_15830 PF08534 Redoxin CDO11_15835 PF03918 Cytochrome C biogenesis protein CDO11_15865 PF03377 TAL effector repeat CDO11_15895 PF00873 AcrB/AcrD/AcrF family CDO11_15905 PF00873 AcrB/AcrD/AcrF family CDO11_15910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_15910 PF00529 HlyD membrane-fusion protein of T1SS CDO11_15960 PF00072 Response regulator receiver domain CDO11_15960 PF00486 Transcriptional regulatory protein, C terminal CDO11_15965 PF03150 Di-haem cytochrome c peroxidase CDO11_15965 PF00034 Cytochrome c CDO11_15970 PF00512 His Kinase A (phospho-acceptor) domain CDO11_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15975 PF03466 LysR substrate binding domain CDO11_16000 PF00069 Protein kinase domain CDO11_16040 PF16671 Actin cross-linking domain CDO11_16040 PF04717 Type VI secretion system, phage-baseplate injector CDO11_16060 PF07724 AAA domain (Cdc48 subfamily) CDO11_16060 PF17871 AAA lid domain CDO11_16060 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_16060 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_16085 PF05638 Type VI secretion system effector, Hcp CDO11_16110 PF05598 Transposase domain (DUF772) CDO11_16110 PF01609 Transposase DDE domain CDO11_16125 PF01609 Transposase DDE domain CDO11_16125 PF05598 Transposase domain (DUF772) CDO11_16160 PF13276 HTH-like domain CDO11_16160 PF13683 Integrase core domain CDO11_16170 PF01106 NifU-like domain CDO11_16175 PF01329 Pterin 4 alpha carbinolamine dehydratase CDO11_16185 PF02535 ZIP Zinc transporter CDO11_16190 PF02535 ZIP Zinc transporter CDO11_16200 PF01479 S4 domain CDO11_16200 PF00849 RNA pseudouridylate synthase CDO11_16205 PF00575 S1 RNA binding domain CDO11_16205 PF10150 Ribonuclease E/G family CDO11_16205 PF12111 Polyribonucleotide phosphorylase C terminal CDO11_16220 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_16225 PF00072 Response regulator receiver domain CDO11_16225 PF00196 Bacterial regulatory proteins, luxR family CDO11_16235 PF05598 Transposase domain (DUF772) CDO11_16235 PF01609 Transposase DDE domain CDO11_16245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_16255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_16255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_16255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_16265 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CDO11_16265 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_16290 PF01609 Transposase DDE domain CDO11_16290 PF05598 Transposase domain (DUF772) CDO11_16295 PF05598 Transposase domain (DUF772) CDO11_16295 PF01609 Transposase DDE domain CDO11_16325 PF10414 Sirohaem synthase dimerisation region CDO11_16325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_16325 PF14824 Sirohaem biosynthesis protein central CDO11_16350 PF12804 MobA-like NTP transferase domain CDO11_16355 PF00994 Probable molybdopterin binding domain CDO11_16355 PF03454 MoeA C-terminal region (domain IV) CDO11_16355 PF03453 MoeA N-terminal region (domain I and II) CDO11_16420 PF00593 TonB dependent receptor CDO11_16420 PF07715 TonB-dependent Receptor Plug Domain CDO11_16445 PF04616 Glycosyl hydrolases family 43 CDO11_16450 PF07532 Bacterial Ig-like domain (group 4) CDO11_16455 PF00593 TonB dependent receptor CDO11_16455 PF07715 TonB-dependent Receptor Plug Domain CDO11_16465 PF00082 Subtilase family CDO11_16465 PF09286 Pro-kumamolisin, activation domain CDO11_16505 PF13520 Amino acid permease CDO11_16520 PF01321 Creatinase/Prolidase N-terminal domain CDO11_16520 PF00557 Metallopeptidase family M24 CDO11_16525 PF00171 Aldehyde dehydrogenase family CDO11_16530 PF00701 Dihydrodipicolinate synthetase family CDO11_16535 PF04324 BFD-like [2Fe-2S] binding domain CDO11_16535 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_16545 PF01266 FAD dependent oxidoreductase CDO11_16550 PF05544 Proline racemase CDO11_16560 PF02881 SRP54-type protein, helical bundle domain CDO11_16560 PF00448 SRP54-type protein, GTPase domain CDO11_16575 PF14815 NUDIX domain CDO11_16575 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_16575 PF00633 Helix-hairpin-helix motif CDO11_16580 PF04362 Bacterial Fe(2+) trafficking CDO11_16585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_16585 PF13426 PAS domain CDO11_16585 PF00072 Response regulator receiver domain CDO11_16675 PF08212 Lipocalin-like domain CDO11_16710 PF03808 Glycosyl transferase WecB/TagA/CpsF family CDO11_16725 PF14667 Polysaccharide biosynthesis C-terminal domain CDO11_16735 PF13439 Glycosyltransferase Family 4 CDO11_16735 PF00534 Glycosyl transferases group 1 CDO11_16755 PF02397 Bacterial sugar transferase CDO11_16775 PF13411 MerR HTH family regulatory protein CDO11_16780 PF00216 Bacterial DNA-binding protein CDO11_16785 PF03484 tRNA synthetase B5 domain CDO11_16785 PF03147 Ferredoxin-fold anticodon binding domain CDO11_16785 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDO11_16785 PF03483 B3/4 domain CDO11_16785 PF01588 Putative tRNA binding domain CDO11_16790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDO11_16790 PF01409 tRNA synthetases class II core domain (F) CDO11_16795 PF00453 Ribosomal protein L20 CDO11_16800 PF01632 Ribosomal protein L35 CDO11_16805 PF05198 Translation initiation factor IF-3, N-terminal domain CDO11_16805 PF00707 Translation initiation factor IF-3, C-terminal domain CDO11_16810 PF03129 Anticodon binding domain CDO11_16810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_16810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_16810 PF02824 TGS domain CDO11_16840 PF12344 Ultra-violet resistance protein B CDO11_16840 PF17757 UvrB interaction domain CDO11_16840 PF00271 Helicase conserved C-terminal domain CDO11_16840 PF04851 Type III restriction enzyme, res subunit CDO11_16840 PF02151 UvrB/uvrC motif CDO11_16845 PF07963 Prokaryotic N-terminal methylation motif CDO11_16845 PF00114 Pilin (bacterial filament) CDO11_16855 PF00114 Pilin (bacterial filament) CDO11_16855 PF07963 Prokaryotic N-terminal methylation motif CDO11_16860 PF05567 Neisseria PilC beta-propeller domain CDO11_16880 PF07963 Prokaryotic N-terminal methylation motif CDO11_16880 PF12019 Type II transport protein GspH CDO11_16885 PF03641 Possible lysine decarboxylase CDO11_16885 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CDO11_16885 PF11892 Domain of unknown function (DUF3412) CDO11_16890 PF00593 TonB dependent receptor CDO11_16900 PF01914 MarC family integral membrane protein CDO11_16910 PF00462 Glutaredoxin CDO11_16915 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_16915 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_16920 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDO11_16920 PF02222 ATP-grasp domain CDO11_16925 PF00731 AIR carboxylase CDO11_16935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDO11_16935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDO11_16945 PF03725 3' exoribonuclease family, domain 2 CDO11_16945 PF01138 3' exoribonuclease family, domain 1 CDO11_16945 PF00575 S1 RNA binding domain CDO11_16945 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDO11_16945 PF00013 KH domain CDO11_16950 PF00312 Ribosomal protein S15 CDO11_16955 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDO11_16955 PF09157 Pseudouridine synthase II TruB, C-terminal CDO11_16955 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDO11_16960 PF02033 Ribosome-binding factor A CDO11_16965 PF04760 Translation initiation factor IF-2, N-terminal region CDO11_16965 PF00009 Elongation factor Tu GTP binding domain CDO11_16965 PF08364 Bacterial translation initiation factor IF-2 associated region CDO11_16965 PF11987 Translation-initiation factor 2 CDO11_16970 PF00575 S1 RNA binding domain CDO11_16970 PF08529 NusA N-terminal domain CDO11_16970 PF13184 NusA-like KH domain CDO11_16975 PF17384 RimP C-terminal SH3 domain CDO11_16975 PF02576 RimP N-terminal domain CDO11_16985 PF00361 Proton-conducting membrane transporter CDO11_16990 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDO11_16990 PF00361 Proton-conducting membrane transporter CDO11_16995 PF00361 Proton-conducting membrane transporter CDO11_16995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_17000 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_17005 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDO11_17010 PF12838 4Fe-4S dicluster domain CDO11_17015 PF00146 NADH dehydrogenase CDO11_17020 PF00384 Molybdopterin oxidoreductase CDO11_17020 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CDO11_17020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO11_17025 PF10531 SLBB domain CDO11_17025 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO11_17025 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO11_17035 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDO11_17040 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDO11_17045 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDO11_17050 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDO11_17065 PF00121 Triosephosphate isomerase CDO11_17090 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_17100 PF00990 Diguanylate cyclase, GGDEF domain CDO11_17100 PF00563 EAL domain CDO11_17100 PF03707 Bacterial signalling protein N terminal repeat CDO11_17115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_17115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_17115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_17115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_17120 PF01039 Carboxyl transferase domain CDO11_17120 PF17848 Acetyl-coA carboxylase zinc finger domain CDO11_17125 PF00290 Tryptophan synthase alpha chain CDO11_17135 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_17140 PF03466 LysR substrate binding domain CDO11_17145 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDO11_17150 PF01416 tRNA pseudouridine synthase CDO11_17170 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDO11_17170 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_17175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_17175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_17180 PF01264 Chorismate synthase CDO11_17185 PF05175 Methyltransferase small domain CDO11_17190 PF02630 SCO1/SenC CDO11_17195 PF02666 Phosphatidylserine decarboxylase CDO11_17215 PF05872 Bacterial protein of unknown function (DUF853) CDO11_17220 PF13936 Helix-turn-helix domain CDO11_17220 PF00665 Integrase core domain CDO11_17235 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_17235 PF03449 Transcription elongation factor, N-terminal CDO11_17240 PF18693 TRAM domain CDO11_17240 PF00919 Uncharacterized protein family UPF0004 CDO11_17240 PF04055 Radical SAM superfamily CDO11_17245 PF01738 Dienelactone hydrolase family CDO11_17270 PF00692 dUTPase CDO11_17275 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_17305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_17305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_17320 PF01266 FAD dependent oxidoreductase CDO11_17325 PF04235 Protein of unknown function (DUF418) CDO11_17330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_17335 PF00877 NlpC/P60 family CDO11_17340 PF00877 NlpC/P60 family CDO11_17360 PF00245 Alkaline phosphatase CDO11_17365 PF09179 TilS substrate binding domain CDO11_17365 PF11734 TilS substrate C-terminal domain CDO11_17365 PF01171 PP-loop family CDO11_17370 PF02609 Exonuclease VII small subunit CDO11_17375 PF00348 Polyprenyl synthetase CDO11_17395 PF01523 Putative modulator of DNA gyrase CDO11_17400 PF04751 Protein of unknown function (DUF615) CDO11_17405 PF01523 Putative modulator of DNA gyrase CDO11_17415 PF13502 AsmA-like C-terminal region CDO11_17415 PF13116 Protein of unknown function CDO11_17420 PF00575 S1 RNA binding domain CDO11_17420 PF10150 Ribonuclease E/G family CDO11_17425 PF02545 Maf-like protein CDO11_17430 PF04402 Protein of unknown function (DUF541) CDO11_17455 PF02590 Predicted SPOUT methyltransferase CDO11_17480 PF01467 Cytidylyltransferase-like CDO11_17500 PF13603 Leucyl-tRNA synthetase, Domain 2 CDO11_17500 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_17500 PF08264 Anticodon-binding domain of tRNA CDO11_17510 PF00085 Thioredoxin CDO11_17525 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_17590 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_17600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_17600 PF00128 Alpha amylase, catalytic domain CDO11_17605 PF01609 Transposase DDE domain CDO11_17605 PF05598 Transposase domain (DUF772) CDO11_17610 PF05598 Transposase domain (DUF772) CDO11_17610 PF01609 Transposase DDE domain CDO11_17630 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_17685 PF03797 Autotransporter beta-domain CDO11_17685 PF00657 GDSL-like Lipase/Acylhydrolase CDO11_17695 PF05690 Thiazole biosynthesis protein ThiG CDO11_17700 PF02390 Putative methyltransferase CDO11_17705 PF02080 TrkA-C domain CDO11_17705 PF03600 Citrate transporter CDO11_17730 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_17735 PF01741 Large-conductance mechanosensitive channel, MscL CDO11_17750 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_17765 PF00588 SpoU rRNA Methylase family CDO11_17765 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_17795 PF11838 ERAP1-like C-terminal domain CDO11_17795 PF01433 Peptidase family M1 domain CDO11_17800 PF00873 AcrB/AcrD/AcrF family CDO11_17805 PF00529 HlyD membrane-fusion protein of T1SS CDO11_17805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_17810 PF00009 Elongation factor Tu GTP binding domain CDO11_17815 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_17820 PF00667 FAD binding domain CDO11_17820 PF00258 Flavodoxin CDO11_17820 PF00175 Oxidoreductase NAD-binding domain CDO11_17825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO11_17825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDO11_17830 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_17850 PF00512 His Kinase A (phospho-acceptor) domain CDO11_17850 PF00672 HAMP domain CDO11_17850 PF01627 Hpt domain CDO11_17850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_17850 PF00072 Response regulator receiver domain CDO11_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_17880 PF03466 LysR substrate binding domain CDO11_17885 PF10414 Sirohaem synthase dimerisation region CDO11_17885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_17885 PF14824 Sirohaem biosynthesis protein central CDO11_17890 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_17905 PF01661 Macro domain CDO11_17910 PF00274 Fructose-bisphosphate aldolase class-I CDO11_17915 PF00224 Pyruvate kinase, barrel domain CDO11_17915 PF02887 Pyruvate kinase, alpha/beta domain CDO11_17925 PF00162 Phosphoglycerate kinase CDO11_17960 PF18011 C-terminal domain found in long catalases CDO11_17960 PF00199 Catalase CDO11_17960 PF06628 Catalase-related immune-responsive CDO11_17985 PF05598 Transposase domain (DUF772) CDO11_17985 PF01609 Transposase DDE domain CDO11_18005 PF12833 Helix-turn-helix domain CDO11_18005 PF02311 AraC-like ligand binding domain CDO11_18035 PF07676 WD40-like Beta Propeller Repeat CDO11_18035 PF00326 Prolyl oligopeptidase family CDO11_18035 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_18060 PF01609 Transposase DDE domain CDO11_18060 PF05598 Transposase domain (DUF772) CDO11_18065 PF03169 OPT oligopeptide transporter protein CDO11_18085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO11_18085 PF02811 PHP domain CDO11_18085 PF14579 Helix-hairpin-helix motif CDO11_18085 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO11_18105 PF01726 LexA DNA binding domain CDO11_18105 PF00717 Peptidase S24-like CDO11_18135 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_18135 PF13456 Reverse transcriptase-like CDO11_18170 PF18766 SWI2/SNF2 ATPase CDO11_18170 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDO11_18170 PF11867 Domain of unknown function (DUF3387) CDO11_18185 PF01909 Nucleotidyltransferase domain CDO11_18190 PF08780 Nucleotidyltransferase substrate binding protein like CDO11_18195 PF02384 N-6 DNA Methylase CDO11_18215 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDO11_18215 PF00271 Helicase conserved C-terminal domain CDO11_18215 PF04851 Type III restriction enzyme, res subunit CDO11_18215 PF08463 EcoEI R protein C-terminal CDO11_18225 PF02384 N-6 DNA Methylase CDO11_18230 PF01420 Type I restriction modification DNA specificity domain CDO11_18295 PF07724 AAA domain (Cdc48 subfamily) CDO11_18295 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_18295 PF17871 AAA lid domain CDO11_18295 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_18350 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18350 PF16671 Actin cross-linking domain CDO11_18355 PF16671 Actin cross-linking domain CDO11_18355 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18360 PF00182 Chitinase class I CDO11_18365 PF16671 Actin cross-linking domain CDO11_18365 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18375 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18375 PF16671 Actin cross-linking domain CDO11_18440 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18440 PF16671 Actin cross-linking domain CDO11_18465 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18470 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18520 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18525 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18535 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18545 PF04717 Type VI secretion system, phage-baseplate injector CDO11_18560 PF04972 BON domain CDO11_18560 PF00691 OmpA family CDO11_18595 PF01527 Transposase CDO11_18600 PF02222 ATP-grasp domain CDO11_18625 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_18640 PF00196 Bacterial regulatory proteins, luxR family CDO11_18640 PF00072 Response regulator receiver domain CDO11_18645 PF07730 Histidine kinase CDO11_18660 PF05209 Septum formation inhibitor MinC, N-terminal domain CDO11_18660 PF03775 Septum formation inhibitor MinC, C-terminal domain CDO11_18665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO11_18670 PF03776 Septum formation topological specificity factor MinE CDO11_18680 PF08521 Two-component sensor kinase N-terminal CDO11_18680 PF00512 His Kinase A (phospho-acceptor) domain CDO11_18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_18685 PF00072 Response regulator receiver domain CDO11_18685 PF00486 Transcriptional regulatory protein, C terminal CDO11_18690 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CDO11_18700 PF08019 Phosphoethanolamine transferase EptA/EptB CDO11_18700 PF00884 Sulfatase CDO11_18720 PF00005 ABC transporter CDO11_18720 PF03412 Peptidase C39 family CDO11_18720 PF00664 ABC transporter transmembrane region CDO11_18740 PF02347 Glycine cleavage system P-protein CDO11_18780 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_18795 PF01196 Ribosomal protein L17 CDO11_18800 PF01000 RNA polymerase Rpb3/RpoA insert domain CDO11_18800 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDO11_18800 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDO11_18805 PF01479 S4 domain CDO11_18805 PF00163 Ribosomal protein S4/S9 N-terminal domain CDO11_18810 PF00411 Ribosomal protein S11 CDO11_18815 PF00416 Ribosomal protein S13/S18 CDO11_18820 PF00344 SecY translocase CDO11_18825 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDO11_18830 PF00327 Ribosomal protein L30p/L7e CDO11_18835 PF00333 Ribosomal protein S5, N-terminal domain CDO11_18835 PF03719 Ribosomal protein S5, C-terminal domain CDO11_18840 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDO11_18845 PF00347 Ribosomal protein L6 CDO11_18850 PF00410 Ribosomal protein S8 CDO11_18855 PF00253 Ribosomal protein S14p/S29e CDO11_18860 PF00673 ribosomal L5P family C-terminus CDO11_18860 PF00281 Ribosomal protein L5 CDO11_18865 PF00467 KOW motif CDO11_18865 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDO11_18870 PF00238 Ribosomal protein L14p/L23e CDO11_18875 PF00366 Ribosomal protein S17 CDO11_18880 PF00831 Ribosomal L29 protein CDO11_18885 PF00252 Ribosomal protein L16p/L10e CDO11_18890 PF07650 KH domain CDO11_18890 PF00189 Ribosomal protein S3, C-terminal domain CDO11_18895 PF00237 Ribosomal protein L22p/L17e CDO11_18900 PF00203 Ribosomal protein S19 CDO11_18905 PF00181 Ribosomal Proteins L2, RNA binding domain CDO11_18905 PF03947 Ribosomal Proteins L2, C-terminal domain CDO11_18910 PF00276 Ribosomal protein L23 CDO11_18915 PF00573 Ribosomal protein L4/L1 family CDO11_18920 PF00297 Ribosomal protein L3 CDO11_18925 PF00338 Ribosomal protein S10p/S20e CDO11_18935 PF03143 Elongation factor Tu C-terminal domain CDO11_18935 PF00009 Elongation factor Tu GTP binding domain CDO11_18935 PF03144 Elongation factor Tu domain 2 CDO11_18940 PF00009 Elongation factor Tu GTP binding domain CDO11_18940 PF03764 Elongation factor G, domain IV CDO11_18940 PF00679 Elongation factor G C-terminus CDO11_18940 PF03144 Elongation factor Tu domain 2 CDO11_18940 PF14492 Elongation Factor G, domain II CDO11_18945 PF00177 Ribosomal protein S7p/S5e CDO11_18950 PF00164 Ribosomal protein S12/S23 CDO11_18955 PF04998 RNA polymerase Rpb1, domain 5 CDO11_18955 PF05000 RNA polymerase Rpb1, domain 4 CDO11_18955 PF04983 RNA polymerase Rpb1, domain 3 CDO11_18955 PF00623 RNA polymerase Rpb1, domain 2 CDO11_18955 PF04997 RNA polymerase Rpb1, domain 1 CDO11_18960 PF04560 RNA polymerase Rpb2, domain 7 CDO11_18960 PF00562 RNA polymerase Rpb2, domain 6 CDO11_18960 PF10385 RNA polymerase beta subunit external 1 domain CDO11_18960 PF04565 RNA polymerase Rpb2, domain 3 CDO11_18960 PF04561 RNA polymerase Rpb2, domain 2 CDO11_18960 PF04563 RNA polymerase beta subunit CDO11_18965 PF00542 Ribosomal protein L7/L12 C-terminal domain CDO11_18965 PF16320 Ribosomal protein L7/L12 dimerisation domain CDO11_18970 PF00466 Ribosomal protein L10 CDO11_18975 PF00687 Ribosomal protein L1p/L10e family CDO11_18980 PF00298 Ribosomal protein L11, RNA binding domain CDO11_18980 PF03946 Ribosomal protein L11, N-terminal domain CDO11_18990 PF00467 KOW motif CDO11_18990 PF02357 Transcription termination factor nusG CDO11_18995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDO11_19005 PF03144 Elongation factor Tu domain 2 CDO11_19005 PF03143 Elongation factor Tu C-terminal domain CDO11_19005 PF00009 Elongation factor Tu GTP binding domain CDO11_19025 PF01926 50S ribosome-binding GTPase CDO11_19025 PF06071 Protein of unknown function (DUF933) CDO11_19030 PF01195 Peptidyl-tRNA hydrolase CDO11_19035 PF01386 Ribosomal L25p family CDO11_19035 PF14693 Ribosomal protein TL5, C-terminal domain CDO11_19040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDO11_19040 PF14572 Phosphoribosyl synthetase-associated domain CDO11_19050 PF00288 GHMP kinases N terminal domain CDO11_19050 PF08544 GHMP kinases C terminal CDO11_19055 PF03550 Outer membrane lipoprotein LolB CDO11_19065 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDO11_19065 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_19065 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDO11_19070 PF03462 PCRF domain CDO11_19070 PF00472 RF-1 domain CDO11_19080 PF00994 Probable molybdopterin binding domain CDO11_19085 PF03976 Polyphosphate kinase 2 (PPK2) CDO11_19095 PF00708 Acylphosphatase CDO11_19100 PF08534 Redoxin CDO11_19105 PF03631 Virulence factor BrkB CDO11_19110 PF03358 NADPH-dependent FMN reductase CDO11_19125 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain CDO11_19125 PF17189 Glycosyl hydrolase family 30 beta sandwich domain CDO11_19135 PF04073 Aminoacyl-tRNA editing domain CDO11_19145 PF01063 Amino-transferase class IV CDO11_19175 PF02233 NAD(P) transhydrogenase beta subunit CDO11_19180 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDO11_19200 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDO11_19200 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDO11_19200 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDO11_19215 PF01612 3'-5' exonuclease CDO11_19215 PF00476 DNA polymerase family A CDO11_19215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_19215 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_19220 PF00293 NUDIX domain CDO11_19230 PF00561 alpha/beta hydrolase fold CDO11_19260 PF17827 PrmC N-terminal domain CDO11_19260 PF05175 Methyltransferase small domain CDO11_19265 PF00578 AhpC/TSA family CDO11_19265 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDO11_19270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_19270 PF13192 Thioredoxin domain CDO11_19275 PF03466 LysR substrate binding domain CDO11_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_19285 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_19285 PF03449 Transcription elongation factor, N-terminal CDO11_19290 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDO11_19320 PF01625 Peptide methionine sulfoxide reductase CDO11_19350 PF00462 Glutaredoxin CDO11_19355 PF01435 Peptidase family M48 CDO11_19355 PF13181 Tetratricopeptide repeat CDO11_19360 PF00072 Response regulator receiver domain CDO11_19360 PF00486 Transcriptional regulatory protein, C terminal CDO11_19365 PF00512 His Kinase A (phospho-acceptor) domain CDO11_19365 PF11808 Phosphate regulon sensor protein PhoR CDO11_19365 PF00989 PAS fold CDO11_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19370 PF02503 Polyphosphate kinase middle domain CDO11_19370 PF13089 Polyphosphate kinase N-terminal domain CDO11_19370 PF17941 Polyphosphate kinase C-terminal domain 1 CDO11_19370 PF13090 Polyphosphate kinase C-terminal domain 2 CDO11_19375 PF02541 Ppx/GppA phosphatase family CDO11_19380 PF00534 Glycosyl transferases group 1 CDO11_19380 PF13439 Glycosyltransferase Family 4 CDO11_19385 PF01569 PAP2 superfamily CDO11_19390 PF00149 Calcineurin-like phosphoesterase CDO11_19410 PF04305 Protein of unknown function (DUF455) CDO11_19415 PF00156 Phosphoribosyl transferase domain CDO11_19430 PF08245 Mur ligase middle domain CDO11_19430 PF02875 Mur ligase family, glutamate ligase domain CDO11_19440 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_19445 PF10459 Peptidase S46 CDO11_19465 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_19465 PF00107 Zinc-binding dehydrogenase CDO11_19475 PF00005 ABC transporter CDO11_19475 PF17850 CysA C-terminal regulatory domain CDO11_19475 PF12857 TOBE-like domain CDO11_19480 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_19485 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_19495 PF00155 Aminotransferase class I and II CDO11_19505 PF00849 RNA pseudouridylate synthase CDO11_19515 PF00691 OmpA family CDO11_19515 PF05736 OprF membrane domain CDO11_19525 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_19525 PF00107 Zinc-binding dehydrogenase CDO11_19530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_19530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_19570 PF01627 Hpt domain CDO11_19570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19570 PF00672 HAMP domain CDO11_19570 PF00512 His Kinase A (phospho-acceptor) domain CDO11_19570 PF00072 Response regulator receiver domain CDO11_19570 PF17149 Periplasmic sensor domain found in signal transduction proteins CDO11_19575 PF00072 Response regulator receiver domain CDO11_19575 PF00990 Diguanylate cyclase, GGDEF domain CDO11_19595 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_19595 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDO11_19615 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_19655 PF01728 FtsJ-like methyltransferase CDO11_19655 PF18125 RlmM ferredoxin-like domain CDO11_19660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO11_19660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_19665 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_19685 PF00378 Enoyl-CoA hydratase/isomerase CDO11_19690 PF00171 Aldehyde dehydrogenase family CDO11_19695 PF00501 AMP-binding enzyme CDO11_19695 PF13193 AMP-binding enzyme C-terminal domain CDO11_19700 PF03466 LysR substrate binding domain CDO11_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_19710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_19740 PF01494 FAD binding domain CDO11_19745 PF01494 FAD binding domain CDO11_19755 PF01923 Cobalamin adenosyltransferase CDO11_19760 PF00850 Histone deacetylase domain CDO11_19765 PF03968 OstA-like protein CDO11_19765 PF04453 LPS transport system D CDO11_19770 PF00639 PPIC-type PPIASE domain CDO11_19770 PF09312 SurA N-terminal domain CDO11_19775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO11_19785 PF00398 Ribosomal RNA adenine dimethylase CDO11_19790 PF04379 ApaG domain CDO11_19795 PF00149 Calcineurin-like phosphoesterase CDO11_19800 PF00186 Dihydrofolate reductase CDO11_19810 PF00303 Thymidylate synthase CDO11_19815 PF01790 Prolipoprotein diacylglyceryl transferase CDO11_19835 PF01219 Prokaryotic diacylglycerol kinase CDO11_19850 PF08521 Two-component sensor kinase N-terminal CDO11_19850 PF00512 His Kinase A (phospho-acceptor) domain CDO11_19850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19855 PF00486 Transcriptional regulatory protein, C terminal CDO11_19855 PF00072 Response regulator receiver domain CDO11_19860 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_19865 PF00005 ABC transporter CDO11_19875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDO11_19925 PF00248 Aldo/keto reductase family CDO11_19935 PF01773 Na+ dependent nucleoside transporter N-terminus CDO11_19935 PF07670 Nucleoside recognition CDO11_19935 PF07662 Na+ dependent nucleoside transporter C-terminus CDO11_19940 PF00294 pfkB family carbohydrate kinase CDO11_19960 PF01207 Dihydrouridine synthase (Dus) CDO11_19975 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDO11_19975 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDO11_19975 PF02772 S-adenosylmethionine synthetase, central domain CDO11_19985 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_19990 PF00328 Histidine phosphatase superfamily (branch 2) CDO11_20020 PF00311 Phosphoenolpyruvate carboxylase CDO11_20030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDO11_20030 PF05221 S-adenosyl-L-homocysteine hydrolase CDO11_20035 PF13649 Methyltransferase domain CDO11_20070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_20090 PF00082 Subtilase family CDO11_20090 PF09286 Pro-kumamolisin, activation domain CDO11_20095 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_20095 PF00107 Zinc-binding dehydrogenase CDO11_20095 PF16197 Ketoacyl-synthetase C-terminal extension CDO11_20095 PF00698 Acyl transferase domain CDO11_20095 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_20095 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_20095 PF08659 KR domain CDO11_20095 PF00550 Phosphopantetheine attachment site CDO11_20095 PF14765 Polyketide synthase dehydratase CDO11_20110 PF02219 Methylenetetrahydrofolate reductase CDO11_20125 PF00293 NUDIX domain CDO11_20135 PF02810 SEC-C motif CDO11_20135 PF01043 SecA preprotein cross-linking domain CDO11_20135 PF07516 SecA Wing and Scaffold domain CDO11_20135 PF07517 SecA DEAD-like domain CDO11_20140 PF01551 Peptidase family M23 CDO11_20140 PF01476 LysM domain CDO11_20150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDO11_20155 PF00091 Tubulin/FtsZ family, GTPase domain CDO11_20155 PF12327 FtsZ family, C-terminal domain CDO11_20160 PF02491 SHS2 domain inserted in FTSA CDO11_20165 PF03799 Cell division protein FtsQ CDO11_20165 PF08478 POTRA domain, FtsQ-type CDO11_20170 PF01820 D-ala D-ala ligase N-terminus CDO11_20170 PF07478 D-ala D-ala ligase C-terminus CDO11_20175 PF08245 Mur ligase middle domain CDO11_20175 PF02875 Mur ligase family, glutamate ligase domain CDO11_20175 PF01225 Mur ligase family, catalytic domain CDO11_20180 PF04101 Glycosyltransferase family 28 C-terminal domain CDO11_20180 PF03033 Glycosyltransferase family 28 N-terminal domain CDO11_20185 PF01098 Cell cycle protein CDO11_20190 PF00953 Glycosyl transferase family 4 CDO11_20195 PF08245 Mur ligase middle domain CDO11_20195 PF01225 Mur ligase family, catalytic domain CDO11_20195 PF02875 Mur ligase family, glutamate ligase domain CDO11_20200 PF08245 Mur ligase middle domain CDO11_20200 PF02875 Mur ligase family, glutamate ligase domain CDO11_20200 PF01225 Mur ligase family, catalytic domain CDO11_20205 PF00905 Penicillin binding protein transpeptidase domain CDO11_20205 PF03717 Penicillin-binding Protein dimerisation domain CDO11_20210 PF04999 Cell division protein FtsL CDO11_20215 PF01795 MraW methylase family CDO11_20220 PF02381 MraZ protein, putative antitoxin-like CDO11_20240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_20250 PF02021 Uncharacterised protein family UPF0102 CDO11_20255 PF04307 LexA-binding, inner membrane-associated putative hydrolase CDO11_20260 PF01565 FAD binding domain CDO11_20260 PF02913 FAD linked oxidases, C-terminal domain CDO11_20265 PF00072 Response regulator receiver domain CDO11_20265 PF00486 Transcriptional regulatory protein, C terminal CDO11_20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20270 PF02702 Osmosensitive K+ channel His kinase sensor domain CDO11_20270 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20270 PF13493 Domain of unknown function (DUF4118) CDO11_20270 PF13492 GAF domain CDO11_20275 PF02669 K+-transporting ATPase, c chain CDO11_20285 PF03814 Potassium-transporting ATPase A subunit CDO11_20315 PF02769 AIR synthase related protein, C-terminal domain CDO11_20315 PF00586 AIR synthase related protein, N-terminal domain CDO11_20320 PF01029 NusB family CDO11_20325 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDO11_20330 PF00925 GTP cyclohydrolase II CDO11_20330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDO11_20335 PF00677 Lumazine binding domain CDO11_20345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_20345 PF01872 RibD C-terminal domain CDO11_20355 PF03477 ATP cone domain CDO11_20365 PF00464 Serine hydroxymethyltransferase CDO11_20385 PF00005 ABC transporter CDO11_20385 PF12848 ABC transporter CDO11_20405 PF00756 Putative esterase CDO11_20415 PF00107 Zinc-binding dehydrogenase CDO11_20415 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_20420 PF02583 Metal-sensitive transcriptional repressor CDO11_20430 PF00072 Response regulator receiver domain CDO11_20430 PF00486 Transcriptional regulatory protein, C terminal CDO11_20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20435 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20435 PF00672 HAMP domain CDO11_20435 PF16527 Two-component sensor protein CpxA, periplasmic domain CDO11_20470 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDO11_20485 PF01926 50S ribosome-binding GTPase CDO11_20490 PF00034 Cytochrome c CDO11_20520 PF01609 Transposase DDE domain CDO11_20520 PF05598 Transposase domain (DUF772) CDO11_20525 PF13291 ACT domain CDO11_20525 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_20530 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_20540 PF01609 Transposase DDE domain CDO11_20540 PF05598 Transposase domain (DUF772) CDO11_20550 PF01527 Transposase CDO11_20575 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_20575 PF01966 HD domain CDO11_20575 PF01743 Poly A polymerase head domain CDO11_20590 PF05598 Transposase domain (DUF772) CDO11_20590 PF01609 Transposase DDE domain CDO11_20600 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_20635 PF01522 Polysaccharide deacetylase CDO11_20635 PF14883 Hypothetical glycosyl hydrolase family 13 CDO11_20640 PF00535 Glycosyl transferase family 2 CDO11_20650 PF01979 Amidohydrolase family CDO11_20655 PF01380 SIS domain CDO11_20660 PF00356 Bacterial regulatory proteins, lacI family CDO11_20665 PF07690 Major Facilitator Superfamily CDO11_20685 PF16355 Domain of unknown function (DUF4982) CDO11_20685 PF00703 Glycosyl hydrolases family 2 CDO11_20685 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CDO11_20685 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CDO11_20685 PF02837 Glycosyl hydrolases family 2, sugar binding domain CDO11_20705 PF01527 Transposase CDO11_20740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_20745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20745 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20750 PF00072 Response regulator receiver domain CDO11_20755 PF00360 Phytochrome region CDO11_20755 PF08446 PAS fold CDO11_20755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20755 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20755 PF01590 GAF domain CDO11_20760 PF04972 BON domain CDO11_20765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO11_20765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_20770 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CDO11_20770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_20805 PF00293 NUDIX domain CDO11_20805 PF01467 Cytidylyltransferase-like CDO11_20815 PF03572 Peptidase family S41 CDO11_20815 PF11818 C-terminal domain of tail specific protease (DUF3340) CDO11_20815 PF00595 PDZ domain CDO11_20815 PF17804 Tail specific protease N-terminal domain CDO11_20825 PF07669 Eco57I restriction-modification methylase CDO11_20825 PF12950 TaqI-like C-terminal specificity domain CDO11_20830 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CDO11_20830 PF04055 Radical SAM superfamily CDO11_20835 PF03099 Biotin/lipoate A/B protein ligase family CDO11_20840 PF04359 Protein of unknown function (DUF493) CDO11_20850 PF00768 D-alanyl-D-alanine carboxypeptidase CDO11_20850 PF07943 Penicillin-binding protein 5, C-terminal domain CDO11_20860 PF05036 Sporulation related domain CDO11_20860 PF03330 Lytic transglycolase CDO11_20865 PF13406 Transglycosylase SLT domain CDO11_20880 PF01471 Putative peptidoglycan binding domain CDO11_20880 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_20880 PF01476 LysM domain CDO11_20895 PF16671 Actin cross-linking domain CDO11_20895 PF04717 Type VI secretion system, phage-baseplate injector CDO11_20920 PF01098 Cell cycle protein CDO11_20925 PF00905 Penicillin binding protein transpeptidase domain CDO11_20925 PF03717 Penicillin-binding Protein dimerisation domain CDO11_20935 PF04085 rod shape-determining protein MreC CDO11_20945 PF00294 pfkB family carbohydrate kinase CDO11_20950 PF01609 Transposase DDE domain CDO11_20950 PF05598 Transposase domain (DUF772) CDO11_20975 PF13673 Acetyltransferase (GNAT) domain CDO11_20985 PF13533 Biotin-lipoyl like CDO11_20995 PF01209 ubiE/COQ5 methyltransferase family CDO11_21000 PF00990 Diguanylate cyclase, GGDEF domain CDO11_21000 PF17152 Periplasmic sensor domain CDO11_21005 PF11838 ERAP1-like C-terminal domain CDO11_21005 PF01433 Peptidase family M1 domain CDO11_21020 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_21020 PF07724 AAA domain (Cdc48 subfamily) CDO11_21020 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_21025 PF00227 Proteasome subunit CDO11_21035 PF00589 Phage integrase family CDO11_21035 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_21045 PF01678 Diaminopimelate epimerase CDO11_21060 PF00326 Prolyl oligopeptidase family CDO11_21060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_21065 PF00155 Aminotransferase class I and II CDO11_21080 PF00326 Prolyl oligopeptidase family CDO11_21080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_21105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDO11_21105 PF03900 Porphobilinogen deaminase, C-terminal domain CDO11_21110 PF04397 LytTr DNA-binding domain CDO11_21110 PF00072 Response regulator receiver domain CDO11_21115 PF06580 Histidine kinase CDO11_21115 PF07694 5TMR of 5TMR-LYT CDO11_21125 PF13632 Glycosyl transferase family group 2 CDO11_21140 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_21165 PF01740 STAS domain CDO11_21165 PF00916 Sulfate permease family CDO11_21170 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_21170 PF00553 Cellulose binding domain CDO11_21185 PF00563 EAL domain CDO11_21185 PF03707 Bacterial signalling protein N terminal repeat CDO11_21185 PF00990 Diguanylate cyclase, GGDEF domain CDO11_21210 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_21230 PF01204 Trehalase CDO11_21250 PF01544 CorA-like Mg2+ transporter protein CDO11_21260 PF00324 Amino acid permease CDO11_21270 PF00041 Fibronectin type III domain CDO11_21270 PF00553 Cellulose binding domain CDO11_21270 PF01341 Glycosyl hydrolases family 6 CDO11_21275 PF03330 Lytic transglycolase CDO11_21280 PF00892 EamA-like transporter family CDO11_21300 PF07759 Protein of unknown function (DUF1615) CDO11_21340 PF00106 short chain dehydrogenase CDO11_21360 PF04715 Anthranilate synthase component I, N terminal region CDO11_21360 PF00425 chorismate binding enzyme CDO11_21365 PF00781 Diacylglycerol kinase catalytic domain CDO11_21370 PF00583 Acetyltransferase (GNAT) family CDO11_21375 PF00834 Ribulose-phosphate 3 epimerase family CDO11_21380 PF00226 DnaJ domain CDO11_21380 PF05099 Tellurite resistance protein TerB CDO11_21385 PF01259 SAICAR synthetase CDO11_21400 PF02868 Thermolysin metallopeptidase, alpha-helical domain CDO11_21400 PF01447 Thermolysin metallopeptidase, catalytic domain CDO11_21400 PF01483 Proprotein convertase P-domain CDO11_21400 PF07504 Fungalysin/Thermolysin Propeptide Motif CDO11_21405 PF02868 Thermolysin metallopeptidase, alpha-helical domain CDO11_21405 PF01447 Thermolysin metallopeptidase, catalytic domain CDO11_21405 PF07504 Fungalysin/Thermolysin Propeptide Motif CDO11_21405 PF01483 Proprotein convertase P-domain CDO11_21410 PF03413 Peptidase propeptide and YPEB domain CDO11_21410 PF07504 Fungalysin/Thermolysin Propeptide Motif CDO11_21410 PF02868 Thermolysin metallopeptidase, alpha-helical domain CDO11_21410 PF01447 Thermolysin metallopeptidase, catalytic domain CDO11_21425 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDO11_21425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_21425 PF13244 Domain of unknown function (DUF4040) CDO11_21425 PF00361 Proton-conducting membrane transporter CDO11_21430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_21435 PF00361 Proton-conducting membrane transporter CDO11_21445 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDO11_21450 PF03334 Na+/H+ antiporter subunit CDO11_21460 PF01609 Transposase DDE domain CDO11_21460 PF05598 Transposase domain (DUF772) CDO11_21470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_21475 PF01047 MarR family CDO11_21485 PF00854 POT family CDO11_21490 PF03301 Tryptophan 2,3-dioxygenase CDO11_21500 PF00676 Dehydrogenase E1 component CDO11_21530 PF00108 Thiolase, N-terminal domain CDO11_21530 PF02803 Thiolase, C-terminal domain CDO11_21580 PF01609 Transposase DDE domain CDO11_21580 PF05598 Transposase domain (DUF772) CDO11_21610 PF01427 D-ala-D-ala dipeptidase CDO11_21615 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_21625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_21625 PF13378 Enolase C-terminal domain-like CDO11_21660 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_21670 PF13520 Amino acid permease CDO11_21685 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_21705 PF05360 yiaA/B two helix domain CDO11_21710 PF01609 Transposase DDE domain CDO11_21710 PF05598 Transposase domain (DUF772) CDO11_21715 PF07995 Glucose / Sorbosone dehydrogenase CDO11_21750 PF14310 Fibronectin type III-like domain CDO11_21750 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_21750 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_21755 PF02152 Dihydroneopterin aldolase CDO11_21760 PF00814 Glycoprotease family CDO11_21765 PF01165 Ribosomal protein S21 CDO11_21770 PF09424 Yqey-like protein CDO11_21780 PF03631 Virulence factor BrkB CDO11_21785 PF01807 CHC2 zinc finger CDO11_21785 PF08278 DNA primase DnaG DnaB-binding CDO11_21785 PF10410 DnaB-helicase binding domain of primase CDO11_21785 PF08275 DNA primase catalytic core, N-terminal domain CDO11_21800 PF13593 SBF-like CPA transporter family (DUF4137) CDO11_21815 PF01040 UbiA prenyltransferase family CDO11_21840 PF00510 Cytochrome c oxidase subunit III CDO11_21845 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDO11_21855 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_21860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDO11_21860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO11_21870 PF00171 Aldehyde dehydrogenase family CDO11_21870 PF01619 Proline dehydrogenase CDO11_21870 PF14850 DNA-binding domain of Proline dehydrogenase CDO11_21870 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDO11_21885 PF00210 Ferritin-like domain CDO11_21895 PF00293 NUDIX domain CDO11_21910 PF00380 Ribosomal protein S9/S16 CDO11_21915 PF00572 Ribosomal protein L13 CDO11_21920 PF03232 Ubiquinone biosynthesis protein COQ7 CDO11_21925 PF00893 Small Multidrug Resistance protein CDO11_21930 PF02675 S-adenosylmethionine decarboxylase CDO11_21935 PF00027 Cyclic nucleotide-binding domain CDO11_21935 PF00325 Bacterial regulatory proteins, crp family CDO11_21945 PF00218 Indole-3-glycerol phosphate synthase CDO11_21950 PF00591 Glycosyl transferase family, a/b domain CDO11_21950 PF02885 Glycosyl transferase family, helical bundle domain CDO11_21965 PF00117 Glutamine amidotransferase class-I CDO11_21990 PF03971 Monomeric isocitrate dehydrogenase CDO11_22000 PF05598 Transposase domain (DUF772) CDO11_22025 PF05598 Transposase domain (DUF772) CDO11_22025 PF01609 Transposase DDE domain CDO11_22035 PF00872 Transposase, Mutator family CDO11_22045 PF14489 QueF-like protein CDO11_22045 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDO11_22055 PF01546 Peptidase family M20/M25/M40 CDO11_22055 PF07687 Peptidase dimerisation domain CDO11_22060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO11_22065 PF00873 AcrB/AcrD/AcrF family CDO11_22070 PF00873 AcrB/AcrD/AcrF family CDO11_22080 PF07063 Domain of unknown function (DUF1338) CDO11_22120 PF00581 Rhodanese-like domain CDO11_22125 PF02556 Preprotein translocase subunit SecB CDO11_22130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDO11_22130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDO11_22140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_22140 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_22140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_22145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_22145 PF00512 His Kinase A (phospho-acceptor) domain CDO11_22150 PF02954 Bacterial regulatory protein, Fis family CDO11_22150 PF00072 Response regulator receiver domain CDO11_22150 PF00158 Sigma-54 interaction domain CDO11_22165 PF07690 Major Facilitator Superfamily CDO11_22170 PF00588 SpoU rRNA Methylase family CDO11_22185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_22185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_22190 PF13784 Fic/DOC family N-terminal CDO11_22190 PF02661 Fic/DOC family CDO11_22195 PF01555 DNA methylase CDO11_22205 PF00561 alpha/beta hydrolase fold CDO11_22210 PF03692 Putative zinc- or iron-chelating domain CDO11_22215 PF00501 AMP-binding enzyme CDO11_22220 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CDO11_22230 PF05598 Transposase domain (DUF772) CDO11_22245 PF01966 HD domain CDO11_22245 PF11871 Domain of unknown function (DUF3391) CDO11_22250 PF07690 Major Facilitator Superfamily CDO11_22275 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_22280 PF03692 Putative zinc- or iron-chelating domain CDO11_22285 PF00920 Dehydratase family CDO11_22290 PF00589 Phage integrase family CDO11_22290 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_22325 PF01218 Coproporphyrinogen III oxidase CDO11_22340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_22340 PF00476 DNA polymerase family A CDO11_22340 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_22340 PF01612 3'-5' exonuclease CDO11_22365 PF17831 Pyruvate dehydrogenase E1 component middle domain CDO11_22365 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_22380 PF05598 Transposase domain (DUF772) CDO11_22380 PF01609 Transposase DDE domain CDO11_22400 PF13333 Integrase core domain CDO11_22400 PF13276 HTH-like domain CDO11_22400 PF00665 Integrase core domain CDO11_22405 PF01527 Transposase CDO11_22435 PF04264 YceI-like domain CDO11_22440 PF00881 Nitroreductase family CDO11_22465 PF02592 Putative vitamin uptake transporter CDO11_22470 PF03710 Glutamate-ammonia ligase adenylyltransferase CDO11_22470 PF08335 GlnD PII-uridylyltransferase CDO11_22480 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO11_22520 PF00793 DAHP synthetase I family CDO11_22535 PF00593 TonB dependent receptor CDO11_22535 PF07715 TonB-dependent Receptor Plug Domain CDO11_22545 PF00118 TCP-1/cpn60 chaperonin family CDO11_22550 PF00166 Chaperonin 10 Kd subunit CDO11_22570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_22580 PF04545 Sigma-70, region 4 CDO11_22580 PF04542 Sigma-70 region 2 CDO11_22585 PF03167 Uracil DNA glycosylase superfamily CDO11_22590 PF00072 Response regulator receiver domain CDO11_22595 PF18075 FtsX extracellular domain CDO11_22600 PF00005 ABC transporter CDO11_22605 PF12300 ATP-dependent RNA helicase RhlB CDO11_22605 PF00270 DEAD/DEAH box helicase CDO11_22605 PF00271 Helicase conserved C-terminal domain CDO11_22610 PF00085 Thioredoxin CDO11_22615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_22615 PF07498 Rho termination factor, N-terminal domain CDO11_22615 PF07497 Rho termination factor, RNA-binding domain CDO11_22625 PF17243 POTRA domain TamA domain 1 CDO11_22625 PF01103 Surface antigen CDO11_22630 PF04357 TamB, inner membrane protein subunit of TAM complex CDO11_22665 PF07977 FabA-like domain CDO11_22670 PF01553 Acyltransferase CDO11_22680 PF00550 Phosphopantetheine attachment site CDO11_22685 PF04820 Tryptophan halogenase CDO11_22740 PF01638 HxlR-like helix-turn-helix CDO11_22745 PF05368 NmrA-like family CDO11_22755 PF03812 2-keto-3-deoxygluconate permease CDO11_22760 PF08267 Cobalamin-independent synthase, N-terminal domain CDO11_22760 PF01717 Cobalamin-independent synthase, Catalytic domain CDO11_22770 PF03358 NADPH-dependent FMN reductase CDO11_22775 PF03466 LysR substrate binding domain CDO11_22775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_22780 PF02677 Epoxyqueuosine reductase QueH CDO11_22795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_22795 PF00672 HAMP domain CDO11_22795 PF00512 His Kinase A (phospho-acceptor) domain CDO11_22800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_22800 PF00672 HAMP domain CDO11_22800 PF00512 His Kinase A (phospho-acceptor) domain CDO11_22805 PF00486 Transcriptional regulatory protein, C terminal CDO11_22805 PF00072 Response regulator receiver domain CDO11_22810 PF00551 Formyl transferase CDO11_22830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_22830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_22835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_22840 PF02146 Sir2 family CDO11_22850 PF07690 Major Facilitator Superfamily CDO11_22855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_22855 PF03466 LysR substrate binding domain CDO11_22875 PF01026 TatD related DNase CDO11_22910 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_22930 PF00266 Aminotransferase class-V CDO11_22945 PF01014 Uricase CDO11_22945 PF09349 OHCU decarboxylase CDO11_22990 PF00326 Prolyl oligopeptidase family CDO11_22995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_22995 PF02785 Biotin carboxylase C-terminal domain CDO11_22995 PF00289 Biotin carboxylase, N-terminal domain CDO11_22995 PF00364 Biotin-requiring enzyme CDO11_23000 PF01039 Carboxyl transferase domain CDO11_23005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_23005 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_23005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_23060 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO11_23060 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO11_23080 PF03969 AFG1-like ATPase CDO11_23100 PF13181 Tetratricopeptide repeat CDO11_23105 PF05746 DALR anticodon binding domain CDO11_23105 PF02092 Glycyl-tRNA synthetase beta subunit CDO11_23110 PF02091 Glycyl-tRNA synthetase alpha subunit CDO11_23115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_23115 PF00437 Type II/IV secretion system protein CDO11_23140 PF00117 Glutamine amidotransferase class-I CDO11_23140 PF00958 GMP synthase C terminal domain CDO11_23150 PF00902 Sec-independent protein translocase protein (TatC) CDO11_23155 PF02416 mttA/Hcf106 family CDO11_23160 PF02416 mttA/Hcf106 family CDO11_23170 PF00762 Ferrochelatase CDO11_23175 PF12697 Alpha/beta hydrolase family CDO11_23200 PF04381 Putative exonuclease, RdgC CDO11_23205 PF01171 PP-loop family CDO11_23220 PF00356 Bacterial regulatory proteins, lacI family CDO11_23225 PF03648 Glycosyl hydrolase family 67 N-terminus CDO11_23225 PF07488 Glycosyl hydrolase family 67 middle domain CDO11_23225 PF07477 Glycosyl hydrolase family 67 C-terminus CDO11_23235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_23235 PF13378 Enolase C-terminal domain-like CDO11_23240 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDO11_23240 PF04616 Glycosyl hydrolases family 43 CDO11_23245 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_23245 PF14310 Fibronectin type III-like domain CDO11_23245 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_23245 PF07691 PA14 domain CDO11_23250 PF01232 Mannitol dehydrogenase Rossmann domain CDO11_23250 PF08125 Mannitol dehydrogenase C-terminal domain CDO11_23270 PF02614 Glucuronate isomerase CDO11_23275 PF00331 Glycosyl hydrolase family 10 CDO11_23275 PF03422 Carbohydrate binding module (family 6) CDO11_23275 PF00553 Cellulose binding domain CDO11_23305 PF04616 Glycosyl hydrolases family 43 CDO11_23340 PF13340 Putative transposase of IS4/5 family (DUF4096) CDO11_23350 PF12792 CSS motif domain associated with EAL CDO11_23350 PF00563 EAL domain CDO11_23355 PF00487 Fatty acid desaturase CDO11_23360 PF00175 Oxidoreductase NAD-binding domain CDO11_23360 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO11_23360 PF00970 Oxidoreductase FAD-binding domain CDO11_23365 PF00440 Bacterial regulatory proteins, tetR family CDO11_23395 PF01047 MarR family CDO11_23400 PF02566 OsmC-like protein CDO11_23495 PF01381 Helix-turn-helix CDO11_23500 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CDO11_23505 PF13538 UvrD-like helicase C-terminal domain CDO11_23510 PF00580 UvrD/REP helicase N-terminal domain CDO11_23510 PF13361 UvrD-like helicase C-terminal domain CDO11_23510 PF12705 PD-(D/E)XK nuclease superfamily CDO11_23515 PF17946 RecC C-terminal domain CDO11_23560 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_23565 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_23570 PF00072 Response regulator receiver domain CDO11_23570 PF00158 Sigma-54 interaction domain CDO11_23570 PF02954 Bacterial regulatory protein, Fis family CDO11_23575 PF00989 PAS fold CDO11_23575 PF00512 His Kinase A (phospho-acceptor) domain CDO11_23575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_23580 PF00909 Ammonium Transporter Family CDO11_23585 PF00543 Nitrogen regulatory protein P-II CDO11_23590 PF00120 Glutamine synthetase, catalytic domain CDO11_23590 PF03951 Glutamine synthetase, beta-Grasp domain CDO11_23595 PF02673 Bacitracin resistance protein BacA CDO11_23635 PF03061 Thioesterase superfamily CDO11_23640 PF13091 PLD-like domain CDO11_23655 PF01883 Iron-sulfur cluster assembly protein CDO11_23655 PF10609 NUBPL iron-transfer P-loop NTPase CDO11_23675 PF01381 Helix-turn-helix CDO11_23680 PF13657 HipA N-terminal domain CDO11_23680 PF07804 HipA-like C-terminal domain CDO11_23685 PF10017 Histidine-specific methyltransferase, SAM-dependent CDO11_23690 PF12867 DinB superfamily CDO11_23690 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_23700 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_23705 PF00005 ABC transporter CDO11_23705 PF00571 CBS domain CDO11_23720 PF00005 ABC transporter CDO11_23730 PF01734 Patatin-like phospholipase CDO11_23745 PF05598 Transposase domain (DUF772) CDO11_23745 PF01609 Transposase DDE domain CDO11_23765 PF00248 Aldo/keto reductase family CDO11_23770 PF16884 N-terminal domain of oxidoreductase CDO11_23770 PF00107 Zinc-binding dehydrogenase CDO11_23775 PF00248 Aldo/keto reductase family CDO11_23785 PF00849 RNA pseudouridylate synthase CDO11_23800 PF04408 Helicase associated domain (HA2) CDO11_23800 PF08482 ATP-dependent helicase C-terminal CDO11_23800 PF00270 DEAD/DEAH box helicase CDO11_23800 PF00271 Helicase conserved C-terminal domain CDO11_23805 PF07308 Protein of unknown function (DUF1456) CDO11_23810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_23810 PF13378 Enolase C-terminal domain-like CDO11_23820 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_23835 PF00248 Aldo/keto reductase family CDO11_23845 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDO11_23845 PF04616 Glycosyl hydrolases family 43 CDO11_23870 PF00072 Response regulator receiver domain CDO11_23870 PF00196 Bacterial regulatory proteins, luxR family CDO11_23875 PF13193 AMP-binding enzyme C-terminal domain CDO11_23875 PF00501 AMP-binding enzyme CDO11_23875 PF16177 Acetyl-coenzyme A synthetase N-terminus CDO11_23890 PF04341 Protein of unknown function, DUF485 CDO11_23895 PF00474 Sodium:solute symporter family CDO11_23910 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_23920 PF04226 Transglycosylase associated protein CDO11_23925 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_23930 PF09423 PhoD-like phosphatase CDO11_23930 PF16655 PhoD-like phosphatase, N-terminal domain CDO11_23935 PF16655 PhoD-like phosphatase, N-terminal domain CDO11_23935 PF09423 PhoD-like phosphatase CDO11_23940 PF02527 rRNA small subunit methyltransferase G CDO11_23955 PF00830 Ribosomal L28 family CDO11_23960 PF00471 Ribosomal protein L33 CDO11_23965 PF04909 Amidohydrolase CDO11_23975 PF04909 Amidohydrolase CDO11_23985 PF04303 PrpF protein CDO11_23990 PF03737 Aldolase/RraA CDO11_23995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_23995 PF03466 LysR substrate binding domain CDO11_24000 PF13091 PLD-like domain CDO11_24000 PF13396 Phospholipase_D-nuclease N-terminal CDO11_24015 PF00580 UvrD/REP helicase N-terminal domain CDO11_24015 PF13361 UvrD-like helicase C-terminal domain CDO11_24030 PF13520 Amino acid permease CDO11_24040 PF02646 RmuC family CDO11_24050 PF00255 Glutathione peroxidase CDO11_24065 PF04055 Radical SAM superfamily CDO11_24075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDO11_24090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_24090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_24100 PF03572 Peptidase family S41 CDO11_24100 PF13180 PDZ domain CDO11_24105 PF01551 Peptidase family M23 CDO11_24115 PF04389 Peptidase family M28 CDO11_24160 PF02463 RecF/RecN/SMC N terminal domain CDO11_24165 PF01227 GTP cyclohydrolase I CDO11_24190 PF00083 Sugar (and other) transporter CDO11_24280 PF02595 Glycerate kinase family CDO11_24285 PF07690 Major Facilitator Superfamily CDO11_24300 PF17785 PUA-like domain CDO11_24300 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_24310 PF03741 Integral membrane protein TerC family CDO11_24315 PF01694 Rhomboid family CDO11_24320 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_24330 PF01569 PAP2 superfamily CDO11_24335 PF01926 50S ribosome-binding GTPase CDO11_24335 PF12631 MnmE helical domain CDO11_24335 PF10396 GTP-binding protein TrmE N-terminus CDO11_24340 PF01522 Polysaccharide deacetylase CDO11_24345 PF02096 60Kd inner membrane protein CDO11_24345 PF14849 YidC periplasmic domain CDO11_24350 PF00825 Ribonuclease P CDO11_24355 PF00468 Ribosomal protein L34