locus-tag	class	description
CDO11_00020	COG0187	DNA topoisomerase II activity
CDO11_00030	COG0501	Belongs to the peptidase M48B family
CDO11_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDO11_00090	COG4772	TonB-dependent receptor
CDO11_00105	COG3039	Transposase
CDO11_00115	COG1755	Isoprenylcysteine carboxyl methyltransferase
CDO11_00140	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDO11_00155	COG3039	Transposase
CDO11_00165	COG1136	(ABC) transporter
CDO11_00215	COG3039	Transposase
CDO11_00225	COG0513	Belongs to the DEAD box helicase family
CDO11_00305	COG1858	cytochrome C peroxidase
CDO11_00315	COG0702	epimerase
CDO11_00340	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CDO11_00355	COG0745	RESPONSE REGULATOR receiver
CDO11_00355	COG3706	GGDEF domain
CDO11_00365	COG2354	Protein conserved in bacteria
CDO11_00375	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CDO11_00385	COG3293	Transposase
CDO11_00430	COG3039	Transposase
CDO11_00480	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CDO11_00555	COG3039	Transposase
CDO11_00570	COG3039	Transposase
CDO11_00610	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDO11_00620	COG0642	Histidine kinase
CDO11_00625	COG1090	epimerase
CDO11_00635	COG3039	Transposase
CDO11_00660	COG2826	transposase and inactivated derivatives, IS30 family
CDO11_00725	COG1136	(ABC) transporter
CDO11_00770	COG1272	protein, Hemolysin III
CDO11_00775	COG1111	helicase
CDO11_00775	COG1205	dead DEAH box helicase
CDO11_00840	COG0067	glutamate synthase
CDO11_00840	COG0069	glutamate synthase activity
CDO11_00840	COG0070	glutamate synthase
CDO11_00845	COG0493	'glutamate synthase
CDO11_00900	COG1609	Transcriptional regulator
CDO11_00935	COG0366	Alpha amylase catalytic
CDO11_00940	COG0366	Alpha amylase catalytic
CDO11_00990	COG0606	chelatase, subunit chli
CDO11_01040	COG1166	arginine decarboxylase activity
CDO11_01050	COG3501	Rhs element vgr protein
CDO11_01130	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_01155	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CDO11_01170	COG0210	DNA helicase
CDO11_01190	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
CDO11_01230	COG2937	Belongs to the GPAT DAPAT family
CDO11_01270	COG3186	Phenylalanine-4-hydroxylase
CDO11_01275	COG1522	sequence-specific DNA binding
CDO11_01285	COG2826	transposase and inactivated derivatives, IS30 family
CDO11_01320	COG1064	alcohol dehydrogenase
CDO11_01330	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CDO11_01340	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CDO11_01350	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CDO11_01375	COG3039	Transposase
CDO11_01380	COG0676	glucose-6-phosphate 1-epimerase activity
CDO11_01455	COG3293	Transposase
CDO11_01470	COG2853	Lipoprotein
CDO11_01485	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CDO11_01490	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CDO11_01495	COG1127	ABC transporter
CDO11_01525	COG3293	Transposase
CDO11_01580	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CDO11_01590	COG3293	Transposase
CDO11_01600	COG3265	gluconokinase activity
CDO11_01605	COG2211	Major facilitator Superfamily
CDO11_01610	COG3459	Glycosyltransferase 36 associated
CDO11_01625	COG2205	protein histidine kinase activity
CDO11_01635	COG1414	Transcriptional regulator
CDO11_01640	COG0738	Major facilitator superfamily
CDO11_01645	COG3254	rhamnose metabolic process
CDO11_01670	COG0339	signal peptide processing
CDO11_01695	COG0564	pseudouridine synthase activity
CDO11_01755	COG3293	Transposase
CDO11_01810	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CDO11_01820	COG0842	Transport permease protein
CDO11_01825	COG1131	(ABC) transporter
CDO11_01830	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CDO11_01850	COG1476	TRANSCRIPTIONal
CDO11_01860	COG4555	ABC transporter
CDO11_01895	COG0625	glutathione transferase activity
CDO11_01950	COG0583	DNA-binding transcription factor activity
CDO11_01985	COG1199	ATP-dependent helicase activity
CDO11_01990	COG3293	Transposase
CDO11_02015	COG1566	PFAM secretion protein HlyD family protein
CDO11_02045	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CDO11_02055	COG0745	RESPONSE REGULATOR receiver
CDO11_02060	COG2205	protein histidine kinase activity
CDO11_02085	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CDO11_02085	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CDO11_02145	COG3237	CsbD-like
CDO11_02150	COG0180	Tryptophanyl-tRNA synthetase
CDO11_02155	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDO11_02205	COG0753	catalase activity
CDO11_02210	COG1595	DNA-templated transcription, initiation
CDO11_02220	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CDO11_02230	COG0628	permease
CDO11_02250	COG1040	competence protein
CDO11_02275	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_02290	COG0463	Glycosyl transferase, family 2
CDO11_02300	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CDO11_02305	COG3100	YcgL domain-containing protein
CDO11_02320	COG3387	PFAM Glycoside hydrolase 15-related
CDO11_02325	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CDO11_02340	COG2239	Acts as a magnesium transporter
CDO11_02350	COG1042	CoA-binding domain protein
CDO11_02350	COG0045	succinate-CoA ligase (ADP-forming) activity
CDO11_02350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CDO11_02360	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CDO11_02370	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CDO11_02405	COG3485	protocatechuate 3,4-dioxygenase
CDO11_02410	COG3485	protocatechuate 3,4-dioxygenase
CDO11_02420	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CDO11_02425	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDO11_02430	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CDO11_02440	COG1414	Transcriptional regulator
CDO11_02455	COG4221	oxidoreductase activity
CDO11_02480	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CDO11_02505	COG0463	Glycosyl transferase, family 2
CDO11_02520	COG1475	DNA binding
CDO11_02525	COG1192	Involved in chromosome partitioning
CDO11_02540	COG0708	Exodeoxyribonuclease III
CDO11_02545	COG2211	Major facilitator Superfamily
CDO11_02560	COG0739	heme binding
CDO11_02630	COG3293	Transposase
CDO11_02655	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CDO11_02675	COG2814	Major facilitator Superfamily
CDO11_02690	COG1289	transmembrane transporter activity
CDO11_02700	COG1136	(ABC) transporter
CDO11_02700	COG0577	efflux transmembrane transporter activity
CDO11_02705	COG0151	Belongs to the GarS family
CDO11_02715	COG0419	ATPase involved in DNA repair
CDO11_02735	COG2267	carboxylic ester hydrolase activity
CDO11_02745	COG2267	carboxylic ester hydrolase activity
CDO11_02750	COG2453	phosphatase
CDO11_02750	COG0671	phosphoesterase, PA-phosphatase related
CDO11_02765	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CDO11_02815	COG0439	Biotin carboxylase
CDO11_02825	COG0511	ligase activity, forming carbon-carbon bonds
CDO11_02845	COG1324	tolerance protein
CDO11_02875	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CDO11_02900	COG0534	Mate efflux family protein
CDO11_02905	COG0616	signal peptide processing
CDO11_02915	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_02935	COG1754	DNA topoisomerase type I activity
CDO11_02935	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CDO11_02955	COG0758	DNA mediated transformation
CDO11_02960	COG1652	LysM domain
CDO11_02965	COG0242	peptide deformylase activity
CDO11_02975	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CDO11_02975	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CDO11_03025	COG1560	Kdo2-lipid A biosynthetic process
CDO11_03035	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CDO11_03250	COG1063	alcohol dehydrogenase
CDO11_03265	COG1294	oxidase, subunit
CDO11_03270	COG1271	oxidase subunit
CDO11_03285	COG2204	response regulator
CDO11_03320	COG2972	Histidine kinase
CDO11_03335	COG0531	amino acid
CDO11_03355	COG3590	peptidase
CDO11_03370	COG0667	Aldo Keto reductase
CDO11_03385	COG3384	dioxygenase
CDO11_03395	COG1573	uracil-dna glycosylase
CDO11_03405	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
CDO11_03420	COG0025	NhaP-type Na H and K H
CDO11_03425	COG1131	(ABC) transporter
CDO11_03430	COG0842	Transport permease protein
CDO11_03445	COG1404	Belongs to the peptidase S8 family
CDO11_03460	COG0745	RESPONSE REGULATOR receiver
CDO11_03505	COG1522	sequence-specific DNA binding
CDO11_03510	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDO11_03535	COG2205	protein histidine kinase activity
CDO11_03535	COG2202	Pas domain
CDO11_03570	COG2813	Specifically methylates the guanine in position
CDO11_03575	COG1187	pseudouridine synthase activity
CDO11_03580	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDO11_03615	COG0697	spore germination
CDO11_03625	COG2011	ABC-type metal ion transport system permease component
CDO11_03655	COG0508	dehydrogenase complex catalyzes the overall conversion of
CDO11_03665	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDO11_03685	COG0356	it plays a direct role in the translocation of protons across the membrane
CDO11_03720	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CDO11_03770	COG3842	ATPase activity
CDO11_03775	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDO11_03780	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CDO11_03795	COG3293	Transposase
CDO11_03840	COG0339	signal peptide processing
CDO11_03880	COG1956	GAF domain-containing protein
CDO11_03895	COG0720	synthase
CDO11_03905	COG0513	Belongs to the DEAD box helicase family
CDO11_03950	COG0626	cystathionine gamma-synthase activity
CDO11_04015	COG2086	electron transfer activity
CDO11_04040	COG0662	Cupin 2, conserved barrel domain protein
CDO11_04040	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CDO11_04045	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDO11_04060	COG3039	Transposase
CDO11_04090	COG3218	ABC-type transport auxiliary lipoprotein component
CDO11_04090	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CDO11_04095	COG1127	ABC transporter
CDO11_04100	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CDO11_04125	COG1183	phosphatidylcholine synthase activity
CDO11_04150	COG3039	Transposase
CDO11_04205	COG0525	valine-tRNA ligase activity
CDO11_04230	COG0795	lipopolysaccharide-transporting ATPase activity
CDO11_04245	COG4974	Belongs to the 'phage' integrase family
CDO11_04250	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CDO11_04260	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CDO11_04260	COG0047	phosphoribosylformylglycinamidine synthase activity
CDO11_04270	COG5295	Hep Hag repeat protein
CDO11_04285	COG1404	Belongs to the peptidase S8 family
CDO11_04290	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CDO11_04300	COG1459	type II secretion system
CDO11_04305	COG2165	general secretion pathway protein
CDO11_04310	COG4970	Tfp pilus assembly protein FimT
CDO11_04315	COG2165	general secretion pathway protein
CDO11_04320	COG4795	General secretion pathway protein
CDO11_04325	COG3156	type II secretion system protein K
CDO11_04330	COG3166	PFAM Fimbrial assembly family protein
CDO11_04345	COG1450	Type ii and iii secretion system protein
CDO11_04360	COG2188	Transcriptional regulator
CDO11_04405	COG3039	Transposase
CDO11_04410	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
CDO11_04415	COG1518	maintenance of DNA repeat elements
CDO11_04460	COG1399	metal-binding, possibly nucleic acid-binding protein
CDO11_04485	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_04500	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CDO11_04505	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CDO11_04535	COG3829	transcription factor binding
CDO11_04610	COG2826	transposase and inactivated derivatives, IS30 family
CDO11_04620	COG0678	peroxiredoxin activity
CDO11_04640	COG0330	HflC and HflK could
CDO11_04645	COG0330	HflC and HflK could
CDO11_04660	COG0308	aminopeptidase N
CDO11_04705	COG1560	Kdo2-lipid A biosynthetic process
CDO11_04710	COG1519	Transferase
CDO11_04715	COG1538	Outer membrane efflux protein
CDO11_04720	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CDO11_04800	COG3710	Transcriptional regulator
CDO11_04825	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CDO11_04870	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CDO11_04880	COG3781	membrane
CDO11_04895	COG0625	glutathione transferase activity
CDO11_04905	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CDO11_04930	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
CDO11_04990	COG3039	Transposase
CDO11_05055	COG3293	Transposase
CDO11_05070	COG3039	Transposase
CDO11_05090	COG3293	Transposase
CDO11_05095	COG0584	glycerophosphoryl diester phosphodiesterase
CDO11_05120	COG0473	3-isopropylmalate dehydrogenase activity
CDO11_05175	COG0544	peptidyl-prolyl cis-trans isomerase activity
CDO11_05180	COG0740	serine-type endopeptidase activity
CDO11_05215	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDO11_05240	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CDO11_05250	COG0631	protein serine/threonine phosphatase activity
CDO11_05335	COG0582	viral genome integration into host DNA
CDO11_05345	COG0859	PFAM glycosyl transferase family 9
CDO11_05355	COG1234	tRNA 3'-trailer cleavage
CDO11_05360	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CDO11_05375	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CDO11_05380	COG0314	molybdopterin synthase activity
CDO11_05410	COG0537	adenosine 5'-monophosphoramidase activity
CDO11_05430	COG0714	Associated with various cellular activities
CDO11_05450	COG0242	peptide deformylase activity
CDO11_05500	COG3039	Transposase
CDO11_05525	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CDO11_05530	COG0726	polysaccharide deacetylase
CDO11_05580	COG2211	Major facilitator Superfamily
CDO11_05590	COG1609	Transcriptional regulator
CDO11_05595	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_05600	COG2851	Citrate transporter
CDO11_05615	COG0642	Histidine kinase
CDO11_05620	COG1840	ABC-type Fe3 transport system, periplasmic component
CDO11_05625	COG2197	response regulator
CDO11_05640	COG0583	DNA-binding transcription factor activity
CDO11_05655	COG4191	Histidine kinase
CDO11_05675	COG0280	phosphate acetyltransferase
CDO11_05675	COG0281	malic enzyme
CDO11_05705	COG0352	thiamine-phosphate diphosphorylase activity
CDO11_05710	COG1773	rubredoxin
CDO11_05715	COG2912	Transglutaminase-like superfamily
CDO11_05735	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CDO11_05760	COG0006	proline dipeptidase activity
CDO11_05775	COG3293	Transposase
CDO11_05800	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CDO11_05820	COG1561	YicC-like family, N-terminal region
CDO11_05845	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDO11_05855	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CDO11_05865	COG0254	rRNA binding
CDO11_05880	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CDO11_05950	COG2304	oxidoreductase activity
CDO11_05970	COG1301	dicarboxylic acid transport
CDO11_05975	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CDO11_05980	COG4773	Receptor
CDO11_05985	COG0739	heme binding
CDO11_05990	COG1376	ErfK ybiS ycfS ynhG family protein
CDO11_06015	COG1022	Amp-dependent synthetase and ligase
CDO11_06025	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_06040	COG0745	RESPONSE REGULATOR receiver
CDO11_06045	COG0642	Histidine kinase
CDO11_06065	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CDO11_06070	COG4149	molybdate abc transporter
CDO11_06075	COG0725	ABC transporter, periplasmic molybdate-binding protein
CDO11_06080	COG3453	Protein conserved in bacteria
CDO11_06080	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDO11_06115	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CDO11_06125	COG3293	Transposase
CDO11_06145	COG0745	RESPONSE REGULATOR receiver
CDO11_06160	COG3039	Transposase
CDO11_06195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CDO11_06200	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CDO11_06245	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CDO11_06315	COG2201	protein-glutamate methylesterase activity
CDO11_06350	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CDO11_06360	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CDO11_06380	COG1842	Phage shock protein A
CDO11_06405	COG0754	glutathionylspermidine amidase activity
CDO11_06430	COG0789	Transcriptional regulator
CDO11_06485	COG0531	amino acid
CDO11_06490	COG2197	response regulator
CDO11_06505	COG1113	amino acid transport
CDO11_06515	COG1271	oxidase subunit
CDO11_06520	COG1294	oxidase, subunit
CDO11_06540	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CDO11_06545	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDO11_06565	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDO11_06580	COG1137	ATPase activity
CDO11_06585	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CDO11_06595	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CDO11_06605	COG0271	Belongs to the BolA IbaG family
CDO11_06635	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CDO11_06660	COG0628	permease
CDO11_06670	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CDO11_06675	COG3178	'Phosphotransferase
CDO11_06690	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDO11_06695	COG1555	photosystem II stabilization
CDO11_06740	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CDO11_06750	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CDO11_06800	COG0534	Mate efflux family protein
CDO11_06835	COG0542	response to heat
CDO11_06860	COG4206	TonB-dependent receptor
CDO11_06920	COG0019	diaminopimelate decarboxylase activity
CDO11_06935	COG4264	IucA IucC family
CDO11_06945	COG4772	TonB-dependent receptor
CDO11_06960	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CDO11_06960	COG4651	solute:proton antiporter activity
CDO11_06995	COG0488	(ABC) transporter
CDO11_07020	COG2755	lipolytic protein G-D-S-L family
CDO11_07020	COG0657	acetylesterase activity
CDO11_07040	COG2207	Transcriptional regulator
CDO11_07045	COG0326	Molecular chaperone. Has ATPase activity
CDO11_07070	COG3328	transposase activity
CDO11_07075	COG0174	glutamine synthetase
CDO11_07080	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CDO11_07090	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CDO11_07105	COG3039	Transposase
CDO11_07135	COG3039	Transposase
CDO11_07155	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CDO11_07160	COG0719	Fe-S assembly protein
CDO11_07165	COG0396	ATPase activity
CDO11_07170	COG0719	Fe-S assembly protein
CDO11_07175	COG1959	2 iron, 2 sulfur cluster binding
CDO11_07195	COG0693	protein deglycase activity
CDO11_07235	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CDO11_07265	COG0519	Catalyzes the synthesis of GMP from XMP
CDO11_07295	COG1764	response to oxidative stress
CDO11_07305	COG0384	phenazine biosynthesis protein PhzF
CDO11_07315	COG0527	aspartate kinase activity
CDO11_07345	COG0142	geranyltranstransferase activity
CDO11_07350	COG0629	single-stranded DNA binding
CDO11_07355	COG3706	GGDEF domain
CDO11_07355	COG4251	negative regulation of phosphorylation
CDO11_07355	COG5001	Diguanylate cyclase
CDO11_07355	COG2203	Gaf domain
CDO11_07385	COG2879	small protein
CDO11_07390	COG1966	Carbon starvation protein
CDO11_07395	COG1741	Belongs to the pirin family
CDO11_07405	COG3501	Rhs element vgr protein
CDO11_07425	COG3501	Rhs element vgr protein
CDO11_07455	COG3501	Rhs element vgr protein
CDO11_07500	COG1741	Belongs to the pirin family
CDO11_07510	COG1515	deoxyribonuclease V activity
CDO11_07530	COG3590	peptidase
CDO11_07535	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDO11_07545	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CDO11_07550	COG2199	diguanylate cyclase activity
CDO11_07550	COG2200	EAL domain
CDO11_07550	COG2202	Pas domain
CDO11_07555	COG0835	chemotaxis
CDO11_07560	COG0840	transmembrane signaling receptor activity
CDO11_07565	COG2198	Histidine kinase
CDO11_07565	COG0643	Histidine kinase
CDO11_07575	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CDO11_07585	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CDO11_07600	COG2205	protein histidine kinase activity
CDO11_07620	COG3039	Transposase
CDO11_07640	COG3039	Transposase
CDO11_07645	COG3039	Transposase
CDO11_07685	COG0735	belongs to the Fur family
CDO11_07735	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CDO11_07740	COG0084	hydrolase, TatD family'
CDO11_07755	COG1960	acyl-CoA dehydrogenase activity
CDO11_07770	COG0367	asparagine synthase
CDO11_07780	COG0305	Participates in initiation and elongation during chromosome replication
CDO11_07785	COG0415	Belongs to the DNA photolyase family
CDO11_07805	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_07855	COG3039	Transposase
CDO11_07960	COG0475	glutathione-regulated potassium exporter activity
CDO11_08060	COG5001	Diguanylate cyclase
CDO11_08060	COG5002	protein histidine kinase activity
CDO11_08065	COG1187	pseudouridine synthase activity
CDO11_08100	COG0475	glutathione-regulated potassium exporter activity
CDO11_08105	COG5000	phosphorelay sensor kinase activity
CDO11_08105	COG5002	protein histidine kinase activity
CDO11_08110	COG0745	RESPONSE REGULATOR receiver
CDO11_08140	COG1132	(ABC) transporter
CDO11_08150	COG3293	Transposase
CDO11_08170	COG3039	Transposase
CDO11_08185	COG3039	Transposase
CDO11_08220	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CDO11_08230	COG4969	Belongs to the N-Me-Phe pilin family
CDO11_08235	COG2194	sulfuric ester hydrolase activity
CDO11_08255	COG2184	nucleotidyltransferase activity
CDO11_08280	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CDO11_08295	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDO11_08295	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CDO11_08300	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CDO11_08305	COG0564	pseudouridine synthase activity
CDO11_08330	COG3387	PFAM Glycoside hydrolase 15-related
CDO11_08335	COG1877	trehalose-phosphatase activity
CDO11_08405	COG1946	Acyl-CoA thioesterase
CDO11_08420	COG0824	Thioesterase
CDO11_08425	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CDO11_08445	COG0268	Binds directly to 16S ribosomal RNA
CDO11_08450	COG0728	peptidoglycan biosynthetic process
CDO11_08455	COG0196	riboflavin kinase activity
CDO11_08485	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CDO11_08490	COG1845	cytochrome c oxidase, subunit III
CDO11_08495	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CDO11_08505	COG3501	Rhs element vgr protein
CDO11_08515	COG3209	COG3209 Rhs family protein
CDO11_08680	COG0824	Thioesterase
CDO11_08690	COG0848	biopolymer transport protein
CDO11_08705	COG2885	chlorophyll binding
CDO11_08715	COG0602	queuosine metabolic process
CDO11_08725	COG1187	pseudouridine synthase activity
CDO11_08770	COG3293	Transposase
CDO11_08810	COG0514	ATP-dependent DNA helicase (RecQ)
CDO11_08820	COG0783	Belongs to the Dps family
CDO11_08825	COG1643	Atp-dependent helicase
CDO11_08835	COG0837	glucose binding
CDO11_08840	COG0837	glucose binding
CDO11_08855	COG3293	Transposase
CDO11_08895	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDO11_08910	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CDO11_08920	COG1199	ATP-dependent helicase activity
CDO11_08930	COG1397	ADP-ribosylglycohydrolase
CDO11_08940	COG0189	ligase activity
CDO11_08955	COG0835	chemotaxis
CDO11_08960	COG0840	transmembrane signaling receptor activity
CDO11_09010	COG1446	asparaginase
CDO11_09015	COG3142	Participates in the control of copper homeostasis
CDO11_09075	COG3537	Alpha-1,2-mannosidase
CDO11_09145	COG1472	Belongs to the glycosyl hydrolase 3 family
CDO11_09165	COG3858	chitin binding
CDO11_09165	COG1388	LysM domain
CDO11_09180	COG0837	glucose binding
CDO11_09185	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CDO11_09195	COG0494	nUDIX hydrolase
CDO11_09205	COG3956	TIGRFAM MazG family protein
CDO11_09220	COG0330	HflC and HflK could
CDO11_09270	COG1960	acyl-CoA dehydrogenase activity
CDO11_09280	COG1309	transcriptional regulator
CDO11_09285	COG4771	TonB-dependent receptor
CDO11_09295	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CDO11_09305	COG0463	Glycosyl transferase, family 2
CDO11_09310	COG0516	GMP reductase activity
CDO11_09310	COG0517	IMP dehydrogenase activity
CDO11_09330	COG1272	protein, Hemolysin III
CDO11_09340	COG0739	heme binding
CDO11_09345	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDO11_09350	COG0626	cystathionine gamma-synthase activity
CDO11_09360	COG1760	l-serine dehydratase
CDO11_09375	COG2353	YceI-like domain
CDO11_09385	COG2353	YceI-like domain
CDO11_09435	COG3293	Transposase
CDO11_09445	COG3867	Arabinogalactan endo-beta-1,4-galactanase
CDO11_09465	COG1960	acyl-CoA dehydrogenase activity
CDO11_09490	COG1024	Enoyl-CoA hydratase
CDO11_09490	COG1250	3-hydroxyacyl-CoA dehydrogenase
CDO11_09505	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDO11_09570	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CDO11_09575	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
CDO11_09580	COG3046	protein related to deoxyribodipyrimidine photolyase
CDO11_09595	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
CDO11_09600	COG1278	Cold shock
CDO11_09620	COG1201	RNA secondary structure unwinding
CDO11_09625	COG1793	dna ligase
CDO11_09635	COG1793	dna ligase
CDO11_09635	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CDO11_09650	COG3706	GGDEF domain
CDO11_09650	COG0745	RESPONSE REGULATOR receiver
CDO11_09665	COG0183	Belongs to the thiolase family
CDO11_09685	COG1451	nucleotide metabolic process
CDO11_09700	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CDO11_09735	COG1047	Peptidyl-prolyl cis-trans
CDO11_09750	COG2824	Alkylphosphonate utilization operon protein PhnA
CDO11_09765	COG1902	pentaerythritol trinitrate reductase activity
CDO11_09770	COG2814	Major facilitator Superfamily
CDO11_09830	COG3293	Transposase
CDO11_09835	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CDO11_09835	COG0392	lysyltransferase activity
CDO11_09845	COG0251	oxidation-reduction process
CDO11_09850	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CDO11_09865	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CDO11_09890	COG1595	DNA-templated transcription, initiation
CDO11_09910	COG2878	Part of a membrane complex involved in electron transport
CDO11_09940	COG0833	amino acid
CDO11_09945	COG2040	homocysteine
CDO11_09960	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CDO11_09990	COG0529	Catalyzes the synthesis of activated sulfate
CDO11_09990	COG2895	sulfate adenylyltransferase (ATP) activity
CDO11_09995	COG0529	Catalyzes the synthesis of activated sulfate
CDO11_09995	COG2895	sulfate adenylyltransferase (ATP) activity
CDO11_10065	COG4771	TonB-dependent receptor
CDO11_10125	COG0750	zinc metalloprotease
CDO11_10135	COG0575	Belongs to the CDS family
CDO11_10200	COG0024	Methionine aminopeptidase
CDO11_10220	COG1393	Belongs to the ArsC family
CDO11_10235	COG0367	asparagine synthase
CDO11_10250	COG4774	siderophore transport
CDO11_10285	COG1566	PFAM secretion protein HlyD family protein
CDO11_10290	COG2814	Major facilitator Superfamily
CDO11_10345	COG1960	acyl-CoA dehydrogenase activity
CDO11_10370	COG2914	Belongs to the UPF0125 (RnfH) family
CDO11_10380	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CDO11_10390	COG0497	DNA recombination
CDO11_10420	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CDO11_10425	COG0287	Prephenate dehydrogenase
CDO11_10425	COG1605	Chorismate mutase
CDO11_10440	COG0583	DNA-binding transcription factor activity
CDO11_10450	COG1132	(ABC) transporter
CDO11_10485	COG2850	peptidyl-arginine hydroxylation
CDO11_10525	COG3293	Transposase
CDO11_10575	COG1131	(ABC) transporter
CDO11_10580	COG1725	Transcriptional regulator
CDO11_10590	COG0386	Belongs to the glutathione peroxidase family
CDO11_10630	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDO11_10640	COG1410	methionine synthase
CDO11_10640	COG0646	methionine synthase
CDO11_10645	COG1410	methionine synthase
CDO11_10645	COG0646	methionine synthase
CDO11_10655	COG1960	acyl-CoA dehydrogenase activity
CDO11_10685	COG0557	exoribonuclease II activity
CDO11_10705	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDO11_10710	COG3293	Transposase
CDO11_10725	COG3039	Transposase
CDO11_10745	COG3328	transposase activity
CDO11_10755	COG1278	Cold shock
CDO11_10770	COG3039	Transposase
CDO11_10780	COG3039	Transposase
CDO11_10830	COG3039	Transposase
CDO11_10880	COG3039	Transposase
CDO11_10890	COG0583	DNA-binding transcription factor activity
CDO11_10940	COG2201	protein-glutamate methylesterase activity
CDO11_10980	COG0531	amino acid
CDO11_10985	COG0531	amino acid
CDO11_10995	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CDO11_11000	COG0277	FAD linked oxidase domain protein
CDO11_11015	COG2801	Transposase and inactivated derivatives
CDO11_11065	COG0436	Aminotransferase
CDO11_11090	COG1187	pseudouridine synthase activity
CDO11_11095	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CDO11_11100	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CDO11_11105	COG2350	Protein conserved in bacteria
CDO11_11135	COG1175	transmembrane transport
CDO11_11140	COG0395	ABC-type sugar transport system, permease component
CDO11_11160	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDO11_11170	COG2957	Belongs to the agmatine deiminase family
CDO11_11180	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CDO11_11190	COG0539	negative regulation of cytoplasmic translation
CDO11_11205	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CDO11_11210	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CDO11_11220	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CDO11_11260	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CDO11_11265	COG0583	DNA-binding transcription factor activity
CDO11_11280	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_11295	COG0583	DNA-binding transcription factor activity
CDO11_11310	COG2201	protein-glutamate methylesterase activity
CDO11_11320	COG1914	H( )-stimulated, divalent metal cation uptake system
CDO11_11325	COG1321	iron dependent repressor
CDO11_11330	COG0590	tRNA wobble adenosine to inosine editing
CDO11_11340	COG0668	transmembrane transport
CDO11_11380	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_11385	COG1183	phosphatidylcholine synthase activity
CDO11_11395	COG3243	poly(R)-hydroxyalkanoic acid synthase
CDO11_11410	COG0723	plastoquinol--plastocyanin reductase activity
CDO11_11410	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDO11_11420	COG2183	response to ionizing radiation
CDO11_11435	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CDO11_11450	COG0671	phosphoesterase, PA-phosphatase related
CDO11_11475	COG1794	racemase activity, acting on amino acids and derivatives
CDO11_11485	COG0697	spore germination
CDO11_11510	COG1012	belongs to the aldehyde dehydrogenase family
CDO11_11545	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CDO11_11560	COG0124	histidyl-tRNA synthetase
CDO11_11615	COG0140	phosphoribosyl-ATP diphosphatase activity
CDO11_11615	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CDO11_11655	COG0653	protein targeting
CDO11_11795	COG3293	Transposase
CDO11_11805	COG3039	Transposase
CDO11_11825	COG3293	Transposase
CDO11_11865	COG3293	Transposase
CDO11_11895	COG2801	Transposase and inactivated derivatives
CDO11_11935	COG3328	transposase activity
CDO11_11980	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CDO11_12005	COG0811	peptide transport
CDO11_12035	COG4591	ABC-type transport system involved in lipoprotein release permease component
CDO11_12050	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CDO11_12065	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CDO11_12080	COG0354	folic acid binding
CDO11_12095	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CDO11_12105	COG0363	glucosamine-6-phosphate deaminase activity
CDO11_12110	COG0129	dihydroxy-acid dehydratase activity
CDO11_12115	COG0800	Aldolase
CDO11_12130	COG3293	Transposase
CDO11_12155	COG0784	Response regulator, receiver
CDO11_12155	COG2205	protein histidine kinase activity
CDO11_12155	COG5002	protein histidine kinase activity
CDO11_12170	COG3293	Transposase
CDO11_12190	COG3706	GGDEF domain
CDO11_12245	COG0386	Belongs to the glutathione peroxidase family
CDO11_12330	COG5001	Diguanylate cyclase
CDO11_12330	COG4251	negative regulation of phosphorylation
CDO11_12330	COG2203	Gaf domain
CDO11_12330	COG3706	GGDEF domain
CDO11_12350	COG1472	Belongs to the glycosyl hydrolase 3 family
CDO11_12400	COG0617	tRNA 3'-terminal CCA addition
CDO11_12415	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDO11_12465	COG4566	intracellular signal transduction
CDO11_12505	COG0077	Prephenate dehydratase
CDO11_12505	COG1605	Chorismate mutase
CDO11_12515	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CDO11_12565	COG2986	histidine ammonia-lyase
CDO11_12575	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CDO11_12615	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
CDO11_12630	COG3115	cell septum assembly
CDO11_12655	COG0316	Belongs to the HesB IscA family
CDO11_12685	COG0288	reversible hydration of carbon dioxide
CDO11_12710	COG2925	Exonuclease
CDO11_12720	COG0667	Aldo Keto reductase
CDO11_12790	COG0494	nUDIX hydrolase
CDO11_12800	COG1024	Enoyl-CoA hydratase
CDO11_12810	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CDO11_12825	COG3039	Transposase
CDO11_12840	COG3293	Transposase
CDO11_12860	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CDO11_12865	COG0573	inorganic phosphate transmembrane transporter activity
CDO11_12880	COG0704	Plays a role in the regulation of phosphate uptake
CDO11_12890	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CDO11_12905	COG3328	transposase activity
CDO11_12930	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CDO11_12940	COG1862	Preprotein translocase
CDO11_13020	COG3293	Transposase
CDO11_13035	COG0405	Gamma-glutamyltransferase
CDO11_13040	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDO11_13060	COG0742	ribosomal rna small subunit methyltransferase
CDO11_13080	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CDO11_13115	COG3039	Transposase
CDO11_13145	COG0303	'Molybdopterin
CDO11_13155	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CDO11_13165	COG1426	Protein conserved in bacteria
CDO11_13180	COG0105	UTP biosynthetic process
CDO11_13190	COG1024	Enoyl-CoA hydratase
CDO11_13190	COG1250	3-hydroxyacyl-CoA dehydrogenase
CDO11_13195	COG0183	Belongs to the thiolase family
CDO11_13200	COG0038	chloride channel
CDO11_13220	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CDO11_13245	COG1674	ftsk spoiiie
CDO11_13250	COG0492	ferredoxin-NADP+ reductase activity
CDO11_13275	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CDO11_13280	COG0542	response to heat
CDO11_13285	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CDO11_13295	COG0482	sulfurtransferase activity
CDO11_13320	COG5001	Diguanylate cyclase
CDO11_13325	COG4585	Histidine kinase
CDO11_13335	COG5002	protein histidine kinase activity
CDO11_13355	COG0784	Response regulator, receiver
CDO11_13355	COG0835	chemotaxis
CDO11_13365	COG1558	bacterial-type flagellum-dependent cell motility
CDO11_13370	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CDO11_13375	COG1749	Flagellar hook protein flgE
CDO11_13380	COG4787	bacterial-type flagellum-dependent cell motility
CDO11_13390	COG4786	Flagellar basal body rod
CDO11_13420	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CDO11_13425	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CDO11_13455	COG2201	protein-glutamate methylesterase activity
CDO11_13460	COG2204	response regulator
CDO11_13475	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CDO11_13485	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_13525	COG1677	Flagellar hook-basal body complex protein FliE
CDO11_13575	COG3190	flagellar
CDO11_13590	COG1987	bacterial-type flagellum assembly
CDO11_13595	COG1684	flagellar biosynthetic protein fliR
CDO11_13600	COG3300	MHYT domain
CDO11_13600	COG5001	Diguanylate cyclase
CDO11_13605	COG5001	Diguanylate cyclase
CDO11_13605	COG3300	MHYT domain
CDO11_13620	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CDO11_13635	COG0455	bacterial-type flagellum organization
CDO11_13655	COG2198	Histidine kinase
CDO11_13655	COG0643	Histidine kinase
CDO11_13690	COG3039	Transposase
CDO11_13705	COG3209	COG3209 Rhs family protein
CDO11_13715	COG3039	Transposase
CDO11_13725	COG3039	Transposase
CDO11_13820	COG3039	Transposase
CDO11_13830	COG4988	ABC transporter
CDO11_13845	COG3039	Transposase
CDO11_13915	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CDO11_13920	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CDO11_13930	COG0137	argininosuccinate synthase activity
CDO11_13935	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CDO11_13950	COG2166	iron-sulfur cluster assembly
CDO11_13965	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CDO11_13975	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CDO11_13990	COG3293	Transposase
CDO11_14015	COG3039	Transposase
CDO11_14025	COG4677	pectinesterase activity
CDO11_14060	COG0402	S-adenosylhomocysteine deaminase activity
CDO11_14075	COG1509	lysine 2,3-aminomutase activity
CDO11_14080	COG5001	Diguanylate cyclase
CDO11_14080	COG3300	MHYT domain
CDO11_14095	COG0483	inositol monophosphate 1-phosphatase activity
CDO11_14130	COG0513	Belongs to the DEAD box helicase family
CDO11_14150	COG0625	glutathione transferase activity
CDO11_14165	COG4681	YaeQ
CDO11_14170	COG2081	HI0933 family
CDO11_14190	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_14220	COG0860	N-Acetylmuramoyl-L-alanine amidase
CDO11_14225	COG0802	atpase or kinase
CDO11_14230	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CDO11_14230	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CDO11_14235	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CDO11_14245	COG3293	Transposase
CDO11_14265	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDO11_14350	COG3328	transposase activity
CDO11_14390	COG2969	positive regulation of protein catabolic process
CDO11_14395	COG0625	glutathione transferase activity
CDO11_14400	COG2857	Cytochrome c1
CDO11_14405	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CDO11_14410	COG0723	plastoquinol--plastocyanin reductase activity
CDO11_14415	COG0741	lytic transglycosylase activity
CDO11_14440	COG1702	phosphate starvation-inducible protein PhoH
CDO11_14460	COG4535	Mg2 and Co2 transporter CorC
CDO11_14475	COG1012	belongs to the aldehyde dehydrogenase family
CDO11_14490	COG1176	ABC-type spermidine putrescine transport system, permease component I
CDO11_14495	COG3842	ATPase activity
CDO11_14540	COG3706	GGDEF domain
CDO11_14540	COG0745	RESPONSE REGULATOR receiver
CDO11_14545	COG0477	Major facilitator Superfamily
CDO11_14555	COG0243	molybdopterin cofactor binding
CDO11_14580	COG1121	(ABC) transporter
CDO11_14590	COG2733	membrane
CDO11_14595	COG0784	Response regulator, receiver
CDO11_14595	COG2205	protein histidine kinase activity
CDO11_14595	COG5002	protein histidine kinase activity
CDO11_14605	COG3039	Transposase
CDO11_14625	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDO11_14630	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDO11_14650	COG1609	Transcriptional regulator
CDO11_14655	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDO11_14655	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CDO11_14660	COG1105	Belongs to the carbohydrate kinase PfkB family
CDO11_14665	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDO11_14665	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CDO11_14680	COG3039	Transposase
CDO11_14745	COG3501	Rhs element vgr protein
CDO11_14760	COG3501	Rhs element vgr protein
CDO11_14820	COG3039	Transposase
CDO11_14850	COG4771	TonB-dependent receptor
CDO11_14860	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CDO11_14880	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CDO11_14885	COG1360	Flagellar Motor Protein
CDO11_14890	COG1192	Involved in chromosome partitioning
CDO11_14895	COG0835	chemotaxis
CDO11_14905	COG0745	RESPONSE REGULATOR receiver
CDO11_14925	COG0840	transmembrane signaling receptor activity
CDO11_14940	COG0840	transmembrane signaling receptor activity
CDO11_14950	COG0840	transmembrane signaling receptor activity
CDO11_14960	COG0840	transmembrane signaling receptor activity
CDO11_14970	COG0840	transmembrane signaling receptor activity
CDO11_14975	COG0840	transmembrane signaling receptor activity
CDO11_14995	COG0835	chemotaxis
CDO11_15015	COG0840	transmembrane signaling receptor activity
CDO11_15045	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDO11_15075	COG0318	PFAM AMP-dependent synthetase and ligase
CDO11_15080	COG1024	Enoyl-CoA hydratase
CDO11_15085	COG0784	Response regulator, receiver
CDO11_15085	COG2198	Histidine kinase
CDO11_15085	COG2205	protein histidine kinase activity
CDO11_15105	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CDO11_15155	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CDO11_15165	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CDO11_15170	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CDO11_15180	COG0505	Belongs to the CarA family
CDO11_15185	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CDO11_15195	COG3293	Transposase
CDO11_15200	COG2258	MOSC domain
CDO11_15205	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDO11_15275	COG0477	Major facilitator Superfamily
CDO11_15285	COG1070	Carbohydrate kinase
CDO11_15295	COG1501	Belongs to the glycosyl hydrolase 31 family
CDO11_15310	COG0800	Aldolase
CDO11_15325	COG3734	2-keto-3-deoxy-galactonokinase
CDO11_15330	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CDO11_15340	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDO11_15355	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CDO11_15360	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CDO11_15370	COG0351	phosphomethylpyrimidine kinase
CDO11_15400	COG0583	DNA-binding transcription factor activity
CDO11_15405	COG1741	Belongs to the pirin family
CDO11_15425	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CDO11_15430	COG0305	Participates in initiation and elongation during chromosome replication
CDO11_15450	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CDO11_15460	COG2137	regulation of response to DNA damage stimulus
CDO11_15485	COG1546	Belongs to the CinA family
CDO11_15490	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CDO11_15495	COG1923	regulation of RNA biosynthetic process
CDO11_15505	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CDO11_15510	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDO11_15520	COG1534	Rna-binding protein
CDO11_15535	COG1238	metal cluster binding
CDO11_15550	COG2840	Smr protein MutS2
CDO11_15620	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CDO11_15625	COG0306	phosphate transporter
CDO11_15640	COG1253	flavin adenine dinucleotide binding
CDO11_15655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CDO11_15670	COG0477	Major facilitator Superfamily
CDO11_15680	COG1132	(ABC) transporter
CDO11_15685	COG1136	(ABC) transporter
CDO11_15705	COG0438	transferase activity, transferring glycosyl groups
CDO11_15715	COG2264	protein methyltransferase activity
CDO11_15745	COG2244	polysaccharide biosynthetic process
CDO11_15795	COG1595	DNA-templated transcription, initiation
CDO11_15810	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CDO11_15830	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CDO11_15905	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDO11_15910	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDO11_15965	COG1858	cytochrome C peroxidase
CDO11_16000	COG0515	serine threonine protein kinase
CDO11_16005	COG0631	protein serine/threonine phosphatase activity
CDO11_16040	COG3501	Rhs element vgr protein
CDO11_16110	COG3039	Transposase
CDO11_16125	COG3039	Transposase
CDO11_16160	COG2801	Transposase and inactivated derivatives
CDO11_16170	COG0316	Belongs to the HesB IscA family
CDO11_16170	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CDO11_16175	COG2154	pterin-4-alpha-carbinolamine dehydratase
CDO11_16185	COG0428	transporter
CDO11_16190	COG0428	transporter
CDO11_16205	COG1530	ribonuclease E activity
CDO11_16220	COG3293	Transposase
CDO11_16235	COG3039	Transposase
CDO11_16255	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CDO11_16290	COG3039	Transposase
CDO11_16295	COG3039	Transposase
CDO11_16325	COG1648	precorrin-2 dehydrogenase activity
CDO11_16325	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CDO11_16350	COG0746	molybdenum cofactor guanylyltransferase activity
CDO11_16420	COG4206	TonB-dependent receptor
CDO11_16455	COG4206	TonB-dependent receptor
CDO11_16505	COG0531	amino acid
CDO11_16520	COG0006	proline dipeptidase activity
CDO11_16530	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDO11_16545	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDO11_16550	COG3938	Belongs to the proline racemase family
CDO11_16560	COG0552	protein localization to endoplasmic reticulum
CDO11_16585	COG0784	Response regulator, receiver
CDO11_16585	COG4191	Histidine kinase
CDO11_16675	COG3040	lipid binding
CDO11_16730	COG0438	transferase activity, transferring glycosyl groups
CDO11_16735	COG0438	transferase activity, transferring glycosyl groups
CDO11_16780	COG0776	regulation of translation
CDO11_16795	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CDO11_16800	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CDO11_16805	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CDO11_16845	COG4969	Belongs to the N-Me-Phe pilin family
CDO11_16885	COG1611	Belongs to the LOG family
CDO11_16900	COG2095	MarC family integral membrane protein
CDO11_16910	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CDO11_16915	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CDO11_16950	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CDO11_16970	COG0195	Participates in both transcription termination and antitermination
CDO11_16985	COG1007	ATP synthesis coupled electron transport
CDO11_17000	COG0713	ATP synthesis coupled electron transport
CDO11_17015	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CDO11_17020	COG1034	ATP synthesis coupled electron transport
CDO11_17025	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CDO11_17030	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
CDO11_17050	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CDO11_17070	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_17090	COG3293	Transposase
CDO11_17170	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CDO11_17175	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CDO11_17185	COG2890	protein-(glutamine-N5) methyltransferase activity
CDO11_17215	COG0433	COG0433 Predicted ATPase
CDO11_17220	COG2826	transposase and inactivated derivatives, IS30 family
CDO11_17235	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CDO11_17245	COG0412	Dienelactone hydrolase
CDO11_17275	COG0489	protein tyrosine kinase activity
CDO11_17320	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDO11_17325	COG2311	Membrane
CDO11_17330	COG1047	Peptidyl-prolyl cis-trans
CDO11_17335	COG0791	NLP P60 protein
CDO11_17340	COG0791	NLP P60 protein
CDO11_17360	COG1785	Belongs to the alkaline phosphatase family
CDO11_17365	COG0037	tRNA processing
CDO11_17375	COG0142	geranyltranstransferase activity
CDO11_17395	COG0312	modulator of DNA gyrase
CDO11_17400	COG3028	Belongs to the UPF0307 family
CDO11_17405	COG0312	modulator of DNA gyrase
CDO11_17415	COG3164	Protein of unknown function
CDO11_17420	COG1530	ribonuclease E activity
CDO11_17430	COG2968	Membrane
CDO11_17480	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CDO11_17510	COG3118	belongs to the thioredoxin family
CDO11_17525	COG3293	Transposase
CDO11_17590	COG3293	Transposase
CDO11_17605	COG3039	Transposase
CDO11_17610	COG3039	Transposase
CDO11_17630	COG3293	Transposase
CDO11_17705	COG3273	potassium ion transport
CDO11_17705	COG0471	metal ion transport
CDO11_17735	COG1970	mechanosensitive ion channel activity
CDO11_17750	COG3293	Transposase
CDO11_17765	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDO11_17795	COG0308	aminopeptidase N
CDO11_17800	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDO11_17810	COG0529	Catalyzes the synthesis of activated sulfate
CDO11_17810	COG2895	sulfate adenylyltransferase (ATP) activity
CDO11_17820	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CDO11_17850	COG2198	Histidine kinase
CDO11_17850	COG2205	protein histidine kinase activity
CDO11_17850	COG0784	Response regulator, receiver
CDO11_17905	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CDO11_17910	COG3588	fructose-bisphosphate aldolase
CDO11_17915	COG0469	pyruvate kinase activity
CDO11_17960	COG0753	catalase activity
CDO11_17985	COG3039	Transposase
CDO11_18005	COG2207	Transcriptional regulator
CDO11_18005	COG1917	Cupin 2, conserved barrel domain protein
CDO11_18035	COG0823	Involved in the tonB-independent uptake of proteins
CDO11_18035	COG1506	peptidase
CDO11_18060	COG3039	Transposase
CDO11_18065	COG1297	OPT oligopeptide transporter protein
CDO11_18135	COG0406	alpha-ribazole phosphatase activity
CDO11_18135	COG0328	RNA-DNA hybrid ribonuclease activity
CDO11_18170	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CDO11_18185	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
CDO11_18190	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
CDO11_18195	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CDO11_18215	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CDO11_18350	COG3501	Rhs element vgr protein
CDO11_18355	COG3501	Rhs element vgr protein
CDO11_18360	COG3179	chitinase
CDO11_18365	COG3501	Rhs element vgr protein
CDO11_18375	COG3501	Rhs element vgr protein
CDO11_18440	COG3501	Rhs element vgr protein
CDO11_18465	COG3501	Rhs element vgr protein
CDO11_18470	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDO11_18520	COG3501	Rhs element vgr protein
CDO11_18525	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDO11_18535	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDO11_18545	COG3501	Rhs element vgr protein
CDO11_18595	COG2963	transposase activity
CDO11_18625	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CDO11_18640	COG2197	response regulator
CDO11_18645	COG4585	Histidine kinase
CDO11_18665	COG2894	cell division
CDO11_18670	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CDO11_18680	COG0642	Histidine kinase
CDO11_18685	COG0745	RESPONSE REGULATOR receiver
CDO11_18690	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CDO11_18700	COG2194	sulfuric ester hydrolase activity
CDO11_18730	COG3551	Protein conserved in bacteria
CDO11_18780	COG3293	Transposase
CDO11_18795	COG0203	ribosomal protein L17
CDO11_18800	COG0202	RNA polymerase activity
CDO11_18815	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CDO11_18820	COG0201	protein transport
CDO11_18830	COG1841	ribosomal large subunit assembly
CDO11_18835	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CDO11_18855	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CDO11_18875	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CDO11_18880	COG0255	Belongs to the universal ribosomal protein uL29 family
CDO11_18885	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CDO11_18910	COG0089	rRNA binding
CDO11_18950	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CDO11_18965	COG0222	ribosome binding
CDO11_18970	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CDO11_18990	COG0250	Participates in transcription elongation, termination and antitermination
CDO11_18995	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CDO11_19025	COG0012	GTP binding
CDO11_19040	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CDO11_19080	COG0521	Mo-molybdopterin cofactor biosynthetic process
CDO11_19100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CDO11_19135	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CDO11_19145	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CDO11_19175	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CDO11_19180	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CDO11_19200	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CDO11_19215	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDO11_19215	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDO11_19260	COG2890	protein-(glutamine-N5) methyltransferase activity
CDO11_19270	COG3634	alkyl hydroperoxide reductase activity
CDO11_19275	COG0583	DNA-binding transcription factor activity
CDO11_19285	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CDO11_19355	COG4783	chaperone-mediated protein folding
CDO11_19370	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CDO11_19380	COG0438	transferase activity, transferring glycosyl groups
CDO11_19385	COG0671	phosphoesterase, PA-phosphatase related
CDO11_19410	COG2833	Protein of unknown function (DUF455)
CDO11_19430	COG0285	dihydrofolate synthase activity
CDO11_19440	COG0406	alpha-ribazole phosphatase activity
CDO11_19475	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CDO11_19480	COG4208	sulfate ABC transporter
CDO11_19485	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CDO11_19490	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CDO11_19495	COG0156	8-amino-7-oxononanoate synthase activity
CDO11_19530	COG0446	pyridine nucleotide-disulphide oxidoreductase
CDO11_19530	COG1902	pentaerythritol trinitrate reductase activity
CDO11_19575	COG0745	RESPONSE REGULATOR receiver
CDO11_19575	COG3706	GGDEF domain
CDO11_19615	COG3293	Transposase
CDO11_19665	COG3386	PFAM SMP-30 Gluconolaconase
CDO11_19685	COG1024	Enoyl-CoA hydratase
CDO11_19695	COG0318	PFAM AMP-dependent synthetase and ligase
CDO11_19700	COG0583	DNA-binding transcription factor activity
CDO11_19740	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CDO11_19745	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CDO11_19755	COG2096	Adenosyltransferase
CDO11_19760	COG0123	including yeast histone deacetylase and acetoin utilization protein
CDO11_19775	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CDO11_19835	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CDO11_19850	COG0642	Histidine kinase
CDO11_19865	COG4181	ATPase activity
CDO11_19875	COG2175	clavaminate synthase activity
CDO11_19925	COG0667	Aldo Keto reductase
CDO11_19935	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CDO11_19940	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDO11_19960	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CDO11_19975	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CDO11_19985	COG3293	Transposase
CDO11_20035	COG2226	methyltransferase
CDO11_20095	COG0604	alcohol dehydrogenase
CDO11_20095	COG1028	Short-chain dehydrogenase reductase Sdr
CDO11_20095	COG3321	synthase
CDO11_20110	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CDO11_20125	COG0494	nUDIX hydrolase
CDO11_20140	COG1388	LysM domain
CDO11_20140	COG4942	peptidase
CDO11_20165	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CDO11_20170	COG1181	Belongs to the D-alanine--D-alanine ligase family
CDO11_20190	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CDO11_20195	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CDO11_20210	COG3116	cell division
CDO11_20255	COG1988	membrane-bound metal-dependent
CDO11_20260	COG0277	FAD linked oxidase domain protein
CDO11_20265	COG0745	RESPONSE REGULATOR receiver
CDO11_20270	COG2205	protein histidine kinase activity
CDO11_20280	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CDO11_20285	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CDO11_20315	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CDO11_20345	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CDO11_20345	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CDO11_20385	COG0488	(ABC) transporter
CDO11_20430	COG0745	RESPONSE REGULATOR receiver
CDO11_20435	COG2205	protein histidine kinase activity
CDO11_20520	COG3039	Transposase
CDO11_20525	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CDO11_20530	COG3293	Transposase
CDO11_20540	COG3039	Transposase
CDO11_20590	COG3039	Transposase
CDO11_20600	COG3293	Transposase
CDO11_20635	COG0726	polysaccharide deacetylase
CDO11_20635	COG1649	PFAM Uncharacterised BCR, COG1649
CDO11_20640	COG1215	transferase activity, transferring glycosyl groups
CDO11_20650	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CDO11_20655	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CDO11_20660	COG1609	Transcriptional regulator
CDO11_20685	COG3250	beta-galactosidase activity
CDO11_20705	COG2963	transposase activity
CDO11_20740	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CDO11_20745	COG4191	Histidine kinase
CDO11_20750	COG0784	Response regulator, receiver
CDO11_20755	COG4251	negative regulation of phosphorylation
CDO11_20760	COG2823	Periplasmic or secreted lipoprotein
CDO11_20765	COG0673	inositol 2-dehydrogenase activity
CDO11_20770	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CDO11_20805	COG1051	belongs to the nudix hydrolase family
CDO11_20805	COG1056	cytidyltransferase-related domain
CDO11_20850	COG1686	Belongs to the peptidase S11 family
CDO11_20860	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CDO11_20865	COG2951	lytic endotransglycosylase activity
CDO11_20880	COG3409	Peptidoglycan-binding domain 1 protein
CDO11_20880	COG5632	N-Acetylmuramoyl-L-alanine amidase
CDO11_20880	COG1388	LysM domain
CDO11_20895	COG3501	Rhs element vgr protein
CDO11_20920	COG0772	Belongs to the SEDS family
CDO11_20935	COG1792	Involved in formation and maintenance of cell shape
CDO11_20940	COG1077	Cell shape determining protein MreB Mrl
CDO11_20950	COG3039	Transposase
CDO11_21000	COG2199	diguanylate cyclase activity
CDO11_21005	COG0308	aminopeptidase N
CDO11_21035	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CDO11_21080	COG1505	serine-type exopeptidase activity
CDO11_21115	COG3275	phosphorelay sensor kinase activity
CDO11_21140	COG3293	Transposase
CDO11_21165	COG0659	secondary active sulfate transmembrane transporter activity
CDO11_21170	COG5297	Belongs to the glycosyl hydrolase family 6
CDO11_21170	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CDO11_21210	COG3293	Transposase
CDO11_21250	COG0598	Magnesium transport protein CorA
CDO11_21260	COG1113	amino acid transport
CDO11_21270	COG5297	Belongs to the glycosyl hydrolase family 6
CDO11_21275	COG4305	rare lipoprotein A
CDO11_21280	COG0697	spore germination
CDO11_21340	COG4221	oxidoreductase activity
CDO11_21370	COG0456	acetyltransferase
CDO11_21380	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CDO11_21410	COG3227	Zinc metalloprotease (Elastase)
CDO11_21425	COG2111	Na H antiporter
CDO11_21425	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CDO11_21430	COG1006	Multisubunit Na H antiporter MnhC subunit
CDO11_21435	COG0651	ATP synthesis coupled electron transport
CDO11_21445	COG2212	antiporter activity
CDO11_21450	COG1320	monovalent cation:proton antiporter activity
CDO11_21460	COG3039	Transposase
CDO11_21485	COG3104	oligopeptide transport
CDO11_21500	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CDO11_21530	COG0183	Belongs to the thiolase family
CDO11_21580	COG3039	Transposase
CDO11_21610	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
CDO11_21615	COG3023	N-Acetylmuramoyl-L-alanine amidase
CDO11_21625	COG4948	Mandelate Racemase Muconate Lactonizing
CDO11_21660	COG3293	Transposase
CDO11_21670	COG0531	amino acid
CDO11_21685	COG3293	Transposase
CDO11_21705	COG4682	membrane
CDO11_21710	COG3039	Transposase
CDO11_21715	COG2133	pyrroloquinoline quinone binding
CDO11_21755	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CDO11_21765	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CDO11_21770	COG1610	YqeY-like protein
CDO11_21780	COG1295	ribonuclease BN
CDO11_21785	COG0358	DNA primase activity
CDO11_21845	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CDO11_21860	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CDO11_22025	COG3039	Transposase
CDO11_22035	COG3328	transposase activity
CDO11_22055	COG1473	amidohydrolase
CDO11_22060	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDO11_22065	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDO11_22080	COG5383	Protein conserved in bacteria
CDO11_22120	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CDO11_22140	COG0028	Belongs to the TPP enzyme family
CDO11_22145	COG4191	Histidine kinase
CDO11_22170	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CDO11_22185	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CDO11_22190	COG3177	Filamentation induced by cAMP protein fic
CDO11_22205	COG0596	Alpha beta hydrolase
CDO11_22215	COG0318	PFAM AMP-dependent synthetase and ligase
CDO11_22220	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CDO11_22275	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CDO11_22380	COG3039	Transposase
CDO11_22435	COG2353	YceI-like domain
CDO11_22465	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CDO11_22480	COG3386	PFAM SMP-30 Gluconolaconase
CDO11_22520	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CDO11_22535	COG4771	TonB-dependent receptor
CDO11_22550	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CDO11_22570	COG1252	NADH dehydrogenase
CDO11_22580	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CDO11_22590	COG3437	response regulator, receiver
CDO11_22595	COG2177	Part of the ABC transporter FtsEX involved in
CDO11_22600	COG2884	Cell division ATP-binding protein ftsE
CDO11_22610	COG3118	belongs to the thioredoxin family
CDO11_22615	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CDO11_22625	COG0729	surface antigen
CDO11_22630	COG2911	Protein conserved in bacteria
CDO11_22665	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CDO11_22680	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CDO11_22740	COG1733	regulation of RNA biosynthetic process
CDO11_22745	COG0702	epimerase
CDO11_22775	COG0583	DNA-binding transcription factor activity
CDO11_22780	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CDO11_22795	COG2205	protein histidine kinase activity
CDO11_22800	COG2205	protein histidine kinase activity
CDO11_22805	COG0745	RESPONSE REGULATOR receiver
CDO11_22835	COG1902	pentaerythritol trinitrate reductase activity
CDO11_22840	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CDO11_22850	COG2814	Major facilitator Superfamily
CDO11_22855	COG0583	DNA-binding transcription factor activity
CDO11_22875	COG0084	hydrolase, TatD family'
CDO11_22910	COG3293	Transposase
CDO11_22930	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CDO11_23000	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CDO11_23005	COG1960	acyl-CoA dehydrogenase activity
CDO11_23060	COG0523	cobalamin synthesis protein
CDO11_23070	COG0697	spore germination
CDO11_23080	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CDO11_23100	COG0457	Tetratricopeptide repeat
CDO11_23115	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CDO11_23140	COG0519	Catalyzes the synthesis of GMP from XMP
CDO11_23140	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CDO11_23150	COG0805	protein transport
CDO11_23160	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CDO11_23170	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CDO11_23225	COG3661	Belongs to the glycosyl hydrolase 67 family
CDO11_23235	COG4948	Mandelate Racemase Muconate Lactonizing
CDO11_23245	COG1472	Belongs to the glycosyl hydrolase 3 family
CDO11_23250	COG0246	Mannitol dehydrogenase
CDO11_23275	COG3693	PFAM glycoside hydrolase, family 10
CDO11_23300	COG2211	Major facilitator Superfamily
CDO11_23340	COG3293	Transposase
CDO11_23350	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CDO11_23395	COG1846	Transcriptional regulator
CDO11_23400	COG1764	response to oxidative stress
CDO11_23500	COG3549	Plasmid maintenance system killer
CDO11_23510	COG1074	ATP-dependent DNA helicase activity
CDO11_23515	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CDO11_23520	COG1196	nuclear chromosome segregation
CDO11_23560	COG2032	superoxide dismutase activity
CDO11_23565	COG2032	superoxide dismutase activity
CDO11_23570	COG2204	response regulator
CDO11_23575	COG3852	Histidine kinase
CDO11_23580	COG0004	ammonium transporteR
CDO11_23585	COG0347	Belongs to the P(II) protein family
CDO11_23590	COG0174	glutamine synthetase
CDO11_23640	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDO11_23650	COG2062	phosphohistidine phosphatase, SixA
CDO11_23655	COG0489	protein tyrosine kinase activity
CDO11_23675	COG1396	sequence-specific DNA binding
CDO11_23680	COG3550	peptidyl-serine autophosphorylation
CDO11_23685	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
CDO11_23690	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDO11_23705	COG1125	glycine betaine transport
CDO11_23705	COG0517	IMP dehydrogenase activity
CDO11_23720	COG1119	ATPase activity
CDO11_23730	COG1752	Esterase of the alpha-beta hydrolase superfamily
CDO11_23745	COG3039	Transposase
CDO11_23765	COG0656	L-ascorbic acid biosynthetic process
CDO11_23770	COG2130	NADP-dependent
CDO11_23775	COG0667	Aldo Keto reductase
CDO11_23785	COG1187	pseudouridine synthase activity
CDO11_23800	COG1643	Atp-dependent helicase
CDO11_23805	COG4807	Protein conserved in bacteria
CDO11_23810	COG4948	Mandelate Racemase Muconate Lactonizing
CDO11_23820	COG0179	Fumarylacetoacetate (FAA) hydrolase
CDO11_23845	COG3507	Belongs to the glycosyl hydrolase 43 family
CDO11_23890	COG3162	membrane
CDO11_23895	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CDO11_23910	COG0708	Exodeoxyribonuclease III
CDO11_23925	COG2091	lysine biosynthetic process via aminoadipic acid
CDO11_23935	COG3540	Alkaline phosphatase
CDO11_23955	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CDO11_23960	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CDO11_23965	COG2159	amidohydrolase
CDO11_23975	COG2159	amidohydrolase
CDO11_23990	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CDO11_23995	COG0583	DNA-binding transcription factor activity
CDO11_24000	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDO11_24015	COG0210	DNA helicase
CDO11_24030	COG0531	amino acid
CDO11_24040	COG1322	Protein conserved in bacteria
CDO11_24050	COG0386	Belongs to the glutathione peroxidase family
CDO11_24100	COG0793	Belongs to the peptidase S41A family
CDO11_24105	COG4942	peptidase
CDO11_24115	COG2234	aminopeptidase activity
CDO11_24160	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CDO11_24165	COG0302	gtp cyclohydrolase
CDO11_24190	COG0477	Major facilitator Superfamily
CDO11_24280	COG1929	Belongs to the glycerate kinase type-1 family
CDO11_24285	COG2271	Major facilitator Superfamily
CDO11_24300	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CDO11_24310	COG0861	Integral membrane protein TerC family
CDO11_24320	COG0584	glycerophosphoryl diester phosphodiesterase
CDO11_24330	COG0671	phosphoesterase, PA-phosphatase related
CDO11_24340	COG0726	polysaccharide deacetylase
CDO11_24355	COG0230	Belongs to the bacterial ribosomal protein bL34 family