CDO11_00005 PF00308 Bacterial dnaA protein CDO11_00005 PF08299 Bacterial dnaA protein helix-turn-helix CDO11_00005 PF11638 DnaA N-terminal domain CDO11_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CDO11_00010 PF02767 DNA polymerase III beta subunit, central domain CDO11_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CDO11_00015 PF02463 RecF/RecN/SMC N terminal domain CDO11_00020 PF00204 DNA gyrase B CDO11_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_00020 PF01751 Toprim domain CDO11_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_00025 PF02517 CAAX protease self-immunity CDO11_00030 PF01435 Peptidase family M48 CDO11_00035 PF09295 ChAPs (Chs5p-Arf1p-binding proteins) CDO11_00035 PF13181 Tetratricopeptide repeat CDO11_00040 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_00045 PF01618 CDO11_00045 CDO11_00050 PF02472 Biopolymer transport protein ExbD/TolR CDO11_00055 PF02472 Biopolymer transport protein ExbD/TolR CDO11_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDO11_00070 PF13091 PLD-like domain CDO11_00080 PF00316 Fructose-1-6-bisphosphatase CDO11_00085 PF00155 Aminotransferase class I and II CDO11_00090 PF00593 TonB dependent receptor CDO11_00090 PF07715 TonB-dependent Receptor Plug Domain CDO11_00105 PF01609 Transposase DDE domain CDO11_00105 PF05598 CDO11_00105 CDO11_00110 PF01070 FMN-dependent dehydrogenase CDO11_00115 PF04191 Phospholipid methyltransferase CDO11_00130 PF07055 Enoyl reductase FAD binding domain CDO11_00130 PF12241 Trans-2-enoyl-CoA reductase catalytic region CDO11_00130 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CDO11_00140 PF00294 pfkB family carbohydrate kinase CDO11_00155 PF01609 Transposase DDE domain CDO11_00155 PF05598 CDO11_00155 CDO11_00165 PF00005 ABC transporter CDO11_00175 PF01609 Transposase DDE domain CDO11_00175 PF05598 CDO11_00175 CDO11_00195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_00215 PF01609 Transposase DDE domain CDO11_00215 PF05598 CDO11_00215 CDO11_00225 PF00270 DEAD/DEAH box helicase CDO11_00225 PF00271 Helicase conserved C-terminal domain CDO11_00235 PF06903 CDO11_00235 CDO11_00240 PF00890 FAD binding domain CDO11_00240 PF13454 FAD-NAD(P)-binding CDO11_00260 PF15535 CDO11_00260 CDO11_00265 PF01609 Transposase DDE domain CDO11_00285 PF05593 CDO11_00285 CDO11_00290 PF12760 Transposase zinc-ribbon domain CDO11_00290 PF12762 CDO11_00290 CDO11_00305 PF03150 Di-haem cytochrome c peroxidase CDO11_00315 PF13460 NADH(P)-binding CDO11_00320 PF00128 Alpha amylase, catalytic domain CDO11_00320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00325 PF11154 CDO11_00325 CDO11_00330 PF00128 Alpha amylase, catalytic domain CDO11_00335 PF02446 4-alpha-glucanotransferase CDO11_00340 PF00128 Alpha amylase, catalytic domain CDO11_00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00340 PF11941 Domain of unknown function (DUF3459) CDO11_00345 PF00128 Alpha amylase, catalytic domain CDO11_00345 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_00345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00350 PF00534 Glycosyl transferases group 1 CDO11_00350 PF08323 Starch synthase catalytic domain CDO11_00355 PF00990 GGDEF domain CDO11_00360 PF02638 CDO11_00360 CDO11_00365 PF05661 CDO11_00365 CDO11_00375 PF03109 CDO11_00375 CDO11_00380 PF13586 CDO11_00380 CDO11_00385 PF13340 CDO11_00385 CDO11_00400 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDO11_00420 PF01464 Transglycosylase SLT domain CDO11_00430 PF01609 Transposase DDE domain CDO11_00430 PF05598 CDO11_00430 CDO11_00435 PF00263 CDO11_00435 CDO11_00435 PF03958 Bacterial type II/III secretion system short domain CDO11_00440 PF01311 CDO11_00440 CDO11_00445 PF09486 CDO11_00445 CDO11_00450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_00450 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_00455 PF02108 CDO11_00455 CDO11_00460 PF09502 CDO11_00460 CDO11_00465 PF01514 Secretory protein of YscJ/FliF family CDO11_00470 PF09487 CDO11_00470 CDO11_00475 PF09613 CDO11_00475 CDO11_00480 PF01312 FlhB HrpN YscU SpaS Family CDO11_00485 PF00771 FHIPEP family CDO11_00490 PF09483 CDO11_00490 CDO11_00495 PF01052 Surface presentation of antigens (SPOA) CDO11_00500 PF00813 CDO11_00500 CDO11_00505 PF01313 CDO11_00505 CDO11_00530 PF05932 Tir chaperone protein (CesT) family CDO11_00555 PF01609 Transposase DDE domain CDO11_00555 PF05598 CDO11_00555 CDO11_00560 PF01610 CDO11_00560 CDO11_00560 PF13542 CDO11_00560 CDO11_00565 PF13546 CDO11_00565 CDO11_00570 PF01609 Transposase DDE domain CDO11_00570 PF05598 CDO11_00570 CDO11_00575 PF01610 CDO11_00575 CDO11_00575 PF13542 CDO11_00575 CDO11_00580 PF05819 CDO11_00580 CDO11_00585 PF13855 Leucine rich repeat CDO11_00610 PF13180 PDZ domain CDO11_00610 PF13365 Trypsin-like peptidase domain CDO11_00625 PF01370 NAD dependent epimerase/dehydratase family CDO11_00625 PF08338 Domain of unknown function (DUF1731) CDO11_00630 PF13628 CDO11_00630 CDO11_00635 PF01609 Transposase DDE domain CDO11_00635 PF05598 CDO11_00635 CDO11_00655 PF13358 DDE superfamily endonuclease CDO11_00655 PF13551 Winged helix-turn helix CDO11_00655 PF13592 CDO11_00655 CDO11_00660 PF00665 Integrase core domain CDO11_00680 PF00293 NUDIX domain CDO11_00695 PF10116 CDO11_00695 CDO11_00710 PF13936 Helix-turn-helix domain CDO11_00715 PF16576 CDO11_00715 CDO11_00725 PF00005 ABC transporter CDO11_00730 PF02687 CDO11_00730 CDO11_00730 PF12704 MacB-like periplasmic core domain CDO11_00735 PF02687 CDO11_00735 CDO11_00735 PF12704 MacB-like periplasmic core domain CDO11_00750 PF08845 CDO11_00750 CDO11_00760 PF05016 Plasmid stabilisation system protein CDO11_00765 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CDO11_00770 PF03006 CDO11_00770 CDO11_00775 PF00270 DEAD/DEAH box helicase CDO11_00775 PF00271 Helicase conserved C-terminal domain CDO11_00775 PF09369 CDO11_00775 CDO11_00780 PF13482 RNase_H superfamily CDO11_00785 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_00790 PF00480 ROK family CDO11_00795 PF00593 TonB dependent receptor CDO11_00795 PF07715 TonB-dependent Receptor Plug Domain CDO11_00800 PF08975 Domain of unknown function (DUF1868) CDO11_00805 PF03435 Saccharopine dehydrogenase CDO11_00830 PF01028 Eukaryotic DNA topoisomerase I, catalytic core CDO11_00835 PF11720 Peptidase inhibitor I78 family CDO11_00840 PF00310 Glutamine amidotransferases class-II CDO11_00840 PF01493 GXGXG motif CDO11_00840 PF01645 Conserved region in glutamate synthase CDO11_00840 PF04898 Glutamate synthase central domain CDO11_00845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_00845 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDO11_00865 PF12760 Transposase zinc-ribbon domain CDO11_00865 PF12762 CDO11_00865 CDO11_00885 PF01609 Transposase DDE domain CDO11_00885 PF05598 CDO11_00885 CDO11_00900 PF00356 Bacterial regulatory proteins, lacI family CDO11_00900 PF13377 Periplasmic binding protein-like domain CDO11_00915 PF00135 Carboxylesterase family CDO11_00925 PF12850 Calcineurin-like phosphoesterase superfamily domain CDO11_00930 PF00128 Alpha amylase, catalytic domain CDO11_00930 PF02806 Alpha amylase, C-terminal all-beta domain CDO11_00930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_00935 PF00128 Alpha amylase, catalytic domain CDO11_00935 PF16657 CDO11_00935 CDO11_00940 PF00128 Alpha amylase, catalytic domain CDO11_00940 PF11896 Domain of unknown function (DUF3416) CDO11_00955 PF00872 CDO11_00955 CDO11_00985 PF13546 CDO11_00985 CDO11_00990 PF01078 Magnesium chelatase, subunit ChlI CDO11_00990 PF13335 CDO11_00990 CDO11_00990 PF13541 Subunit ChlI of Mg-chelatase CDO11_00995 PF04380 CDO11_00995 CDO11_01000 PF00543 Nitrogen regulatory protein P-II CDO11_01010 PF02838 Glycosyl hydrolase family 20, domain 2 CDO11_01010 PF07555 beta-N-acetylglucosaminidase CDO11_01025 PF13505 Outer membrane protein beta-barrel domain CDO11_01030 PF09851 CDO11_01030 CDO11_01030 PF14470 Bacterial PH domain CDO11_01035 PF01564 Spermine/spermidine synthase CDO11_01035 PF17284 CDO11_01035 CDO11_01040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_01045 PF01609 Transposase DDE domain CDO11_01045 PF05598 CDO11_01045 CDO11_01050 PF05954 Phage late control gene D protein (GPD) CDO11_01050 PF10106 CDO11_01050 CDO11_01050 PF13296 CDO11_01050 CDO11_01055 PF11678 CDO11_01055 CDO11_01060 PF11394 CDO11_01060 CDO11_01065 PF05488 PAAR motif CDO11_01070 PF11678 CDO11_01070 CDO11_01075 PF11394 CDO11_01075 CDO11_01090 PF01134 Glucose inhibited division protein A CDO11_01090 PF13932 GidA associated domain 3 CDO11_01105 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_01110 PF02698 DUF218 domain CDO11_01115 PF12680 SnoaL-like domain CDO11_01120 PF05118 Aspartyl/Asparaginyl beta-hydroxylase CDO11_01125 PF08241 Methyltransferase domain CDO11_01130 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_01135 PF12697 Alpha/beta hydrolase family CDO11_01145 PF13683 CDO11_01145 CDO11_01150 PF14315 CDO11_01150 CDO11_01155 PF04349 Periplasmic glucan biosynthesis protein, MdoG CDO11_01160 PF00512 His Kinase A (phospho-acceptor) domain CDO11_01160 PF01590 GAF domain CDO11_01165 PF00265 Thymidine kinase CDO11_01170 PF00580 UvrD/REP helicase N-terminal domain CDO11_01170 PF13361 UvrD-like helicase C-terminal domain CDO11_01185 PF04337 Protein of unknown function, DUF480 CDO11_01190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CDO11_01195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO11_01200 PF04820 Tryptophan halogenase CDO11_01205 PF00593 TonB dependent receptor CDO11_01210 PF00593 TonB dependent receptor CDO11_01210 PF13620 Carboxypeptidase regulatory-like domain CDO11_01215 PF00356 Bacterial regulatory proteins, lacI family CDO11_01215 PF13377 Periplasmic binding protein-like domain CDO11_01230 PF01553 Acyltransferase CDO11_01240 PF04325 Protein of unknown function (DUF465) CDO11_01255 PF02502 Ribose/Galactose Isomerase CDO11_01255 PF12408 Ribose-5-phosphate isomerase CDO11_01265 PF14300 Domain of unknown function (DUF4375) CDO11_01270 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CDO11_01275 PF01037 AsnC family CDO11_01275 PF13412 Winged helix-turn-helix DNA-binding CDO11_01300 PF08212 Lipocalin-like domain CDO11_01310 PF01609 Transposase DDE domain CDO11_01320 PF00107 Zinc-binding dehydrogenase CDO11_01320 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_01330 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01340 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01350 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_01360 PF02810 SEC-C motif CDO11_01375 PF01609 Transposase DDE domain CDO11_01375 PF05598 CDO11_01375 CDO11_01380 PF01263 Aldose 1-epimerase CDO11_01380 PF01471 Putative peptidoglycan binding domain CDO11_01380 PF13406 Transglycosylase SLT domain CDO11_01390 PF01126 Heme oxygenase CDO11_01395 PF00360 Phytochrome region CDO11_01395 PF01590 GAF domain CDO11_01395 PF08446 PAS fold CDO11_01395 PF08448 PAS fold CDO11_01435 PF12760 Transposase zinc-ribbon domain CDO11_01440 PF13546 CDO11_01440 CDO11_01445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO11_01445 PF06827 Zinc finger found in FPG and IleRS CDO11_01445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDO11_01450 PF12760 Transposase zinc-ribbon domain CDO11_01450 PF12762 CDO11_01450 CDO11_01455 PF13340 CDO11_01455 CDO11_01460 PF13586 CDO11_01460 CDO11_01470 PF04333 CDO11_01470 CDO11_01475 PF13466 STAS domain CDO11_01480 PF05494 Toluene tolerance, Ttg2 CDO11_01485 PF02470 CDO11_01485 CDO11_01490 PF02405 CDO11_01490 CDO11_01495 PF00005 ABC transporter CDO11_01505 PF13508 Acetyltransferase (GNAT) domain CDO11_01510 PF12760 Transposase zinc-ribbon domain CDO11_01510 PF12762 CDO11_01510 CDO11_01520 PF00665 Integrase core domain CDO11_01520 PF13936 Helix-turn-helix domain CDO11_01525 PF13340 CDO11_01525 CDO11_01530 PF13586 CDO11_01530 CDO11_01545 PF01609 Transposase DDE domain CDO11_01555 PF01610 CDO11_01555 CDO11_01555 PF13542 CDO11_01555 CDO11_01580 PF13360 PQQ-like domain CDO11_01590 PF13340 CDO11_01590 CDO11_01595 PF13586 CDO11_01595 CDO11_01600 PF13671 AAA domain CDO11_01605 PF13347 MFS/sugar transport protein CDO11_01610 PF06165 Glycosyltransferase family 36 CDO11_01610 PF17167 CDO11_01610 CDO11_01615 PF15979 CDO11_01615 CDO11_01625 PF00072 Response regulator receiver domain CDO11_01625 PF00512 His Kinase A (phospho-acceptor) domain CDO11_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_01625 PF12860 CDO11_01625 CDO11_01630 PF02659 CDO11_01630 CDO11_01635 PF01614 Bacterial transcriptional regulator CDO11_01635 PF09339 IclR helix-turn-helix domain CDO11_01640 PF07690 Major Facilitator Superfamily CDO11_01645 PF05336 Domain of unknown function (DUF718) CDO11_01650 PF05598 CDO11_01650 CDO11_01655 PF12760 Transposase zinc-ribbon domain CDO11_01655 PF12762 CDO11_01655 CDO11_01670 PF01432 Peptidase family M3 CDO11_01680 PF01553 Acyltransferase CDO11_01685 PF00472 RF-1 domain CDO11_01690 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) CDO11_01695 PF00849 RNA pseudouridylate synthase CDO11_01700 PF07883 Cupin domain CDO11_01705 PF03109 CDO11_01705 CDO11_01710 PF02036 SCP-2 sterol transfer family CDO11_01750 PF13586 CDO11_01750 CDO11_01755 PF13340 CDO11_01755 CDO11_01780 PF12760 Transposase zinc-ribbon domain CDO11_01780 PF12762 CDO11_01780 CDO11_01790 PF01609 Transposase DDE domain CDO11_01790 PF05598 CDO11_01790 CDO11_01810 PF02558 Ketopantoate reductase PanE/ApbA CDO11_01810 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDO11_01815 PF12686 CDO11_01815 CDO11_01820 PF01061 CDO11_01820 CDO11_01825 PF00005 ABC transporter CDO11_01830 PF00175 Oxidoreductase NAD-binding domain CDO11_01830 PF00970 Oxidoreductase FAD-binding domain CDO11_01835 PF01545 Cation efflux family CDO11_01840 PF02583 Metal-sensitive transcriptional repressor CDO11_01850 PF01381 Helix-turn-helix CDO11_01855 PF08386 TAP-like protein CDO11_01860 PF00005 ABC transporter CDO11_01865 PF12679 CDO11_01865 CDO11_01870 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_01875 PF04820 Tryptophan halogenase CDO11_01880 PF13621 Cupin-like domain CDO11_01885 PF07277 CDO11_01885 CDO11_01890 PF00593 TonB dependent receptor CDO11_01890 PF07715 TonB-dependent Receptor Plug Domain CDO11_01895 PF00043 Glutathione S-transferase, C-terminal domain CDO11_01895 PF02798 Glutathione S-transferase, N-terminal domain CDO11_01900 PF00326 Prolyl oligopeptidase family CDO11_01900 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_01910 PF05960 Bacterial protein of unknown function (DUF885) CDO11_01925 PF00490 Delta-aminolevulinic acid dehydratase CDO11_01930 PF13546 CDO11_01930 CDO11_01945 PF13460 NADH(P)-binding CDO11_01950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_01950 PF03466 LysR substrate binding domain CDO11_01955 PF01223 DNA/RNA non-specific endonuclease CDO11_01960 PF00175 Oxidoreductase NAD-binding domain CDO11_01960 PF00258 Flavodoxin CDO11_01960 PF03929 CDO11_01960 CDO11_01970 PF07676 WD40-like Beta Propeller Repeat CDO11_01975 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_01975 PF08501 Shikimate dehydrogenase substrate binding domain CDO11_01985 PF13307 Helicase C-terminal domain CDO11_01990 PF13340 CDO11_01990 CDO11_01995 PF13586 CDO11_01995 CDO11_02005 PF12760 Transposase zinc-ribbon domain CDO11_02005 PF12762 CDO11_02005 CDO11_02015 PF13437 HlyD family secretion protein CDO11_02020 PF00199 Catalase CDO11_02020 PF06628 Catalase-related immune-responsive CDO11_02025 PF12796 Ankyrin repeats (3 copies) CDO11_02045 PF01207 Dihydrouridine synthase (Dus) CDO11_02055 PF00072 Response regulator receiver domain CDO11_02055 PF00486 Transcriptional regulatory protein, C terminal CDO11_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_02070 PF07394 CDO11_02070 CDO11_02085 PF02237 Biotin protein ligase C terminal domain CDO11_02085 PF03099 Biotin/lipoate A/B protein ligase family CDO11_02085 PF08279 HTH domain CDO11_02090 PF03309 Type III pantothenate kinase CDO11_02095 PF05036 Sporulation related domain CDO11_02105 PF02223 Thymidylate kinase CDO11_02130 PF00491 Arginase family CDO11_02135 PF08085 CDO11_02135 CDO11_02140 PF08085 CDO11_02140 CDO11_02145 PF05532 CsbD-like CDO11_02150 PF00579 tRNA synthetases class I (W and Y) CDO11_02150 PF07411 Domain of unknown function (DUF1508) CDO11_02155 PF00753 Metallo-beta-lactamase superfamily CDO11_02165 PF02225 PA domain CDO11_02165 PF04389 Peptidase family M28 CDO11_02185 PF00892 EamA-like transporter family CDO11_02190 PF12697 Alpha/beta hydrolase family CDO11_02200 PF01292 Prokaryotic cytochrome b561 CDO11_02205 PF00199 Catalase CDO11_02210 PF04542 Sigma-70 region 2 CDO11_02210 PF08281 Sigma-70, region 4 CDO11_02220 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_02225 PF13419 Haloacid dehalogenase-like hydrolase CDO11_02230 PF01594 CDO11_02230 CDO11_02245 PF01040 UbiA prenyltransferase family CDO11_02250 PF00156 Phosphoribosyl transferase domain CDO11_02255 PF04055 Radical SAM superfamily CDO11_02255 PF06968 Biotin and Thiamin Synthesis associated domain CDO11_02260 PF00155 Aminotransferase class I and II CDO11_02275 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_02285 PF01494 FAD binding domain CDO11_02290 PF00535 Glycosyl transferase family 2 CDO11_02295 PF13723 CDO11_02295 CDO11_02300 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_02300 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_02305 PF05166 YcgL domain CDO11_02310 PF00023 Ankyrin repeat CDO11_02310 PF12796 Ankyrin repeats (3 copies) CDO11_02320 PF00723 Glycosyl hydrolases family 15 CDO11_02325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_02325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_02330 PF13546 CDO11_02330 CDO11_02335 PF00999 Sodium/hydrogen exchanger family CDO11_02335 PF02254 TrkA-N domain CDO11_02340 PF00571 CBS domain CDO11_02340 PF01769 Divalent cation transporter CDO11_02340 PF03448 MgtE intracellular N domain CDO11_02350 PF13302 Acetyltransferase (GNAT) domain CDO11_02350 PF13380 CoA binding domain CDO11_02350 PF13549 ATP-grasp domain CDO11_02350 PF13607 Succinyl-CoA ligase like flavodoxin domain CDO11_02355 PF04332 CDO11_02355 CDO11_02360 PF00317 Ribonucleotide reductase, all-alpha domain CDO11_02360 PF02867 Ribonucleotide reductase, barrel domain CDO11_02370 PF00268 Ribonucleotide reductase, small chain CDO11_02375 PF06114 Domain of unknown function (DUF955) CDO11_02385 PF00085 Thioredoxin CDO11_02400 PF00108 Thiolase, N-terminal domain CDO11_02400 PF02803 Thiolase, C-terminal domain CDO11_02405 PF00775 Dioxygenase CDO11_02405 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CDO11_02410 PF00775 Dioxygenase CDO11_02420 PF00206 Lyase CDO11_02420 PF10397 Adenylosuccinate lyase C-terminus CDO11_02425 PF00561 alpha/beta hydrolase fold CDO11_02430 PF02627 Carboxymuconolactone decarboxylase family CDO11_02435 PF12146 Putative lysophospholipase CDO11_02440 PF01614 Bacterial transcriptional regulator CDO11_02440 PF09339 IclR helix-turn-helix domain CDO11_02445 PF01163 RIO1 family CDO11_02455 PF00106 short chain dehydrogenase CDO11_02465 PF05036 Sporulation related domain CDO11_02470 PF00750 tRNA synthetases class I (R) CDO11_02470 PF03485 Arginyl tRNA synthetase N terminal domain CDO11_02470 PF05746 DALR anticodon binding domain CDO11_02475 PF04002 RadC-like JAB domain CDO11_02480 PF02441 Flavoprotein CDO11_02480 PF04127 DNA / pantothenate metabolism flavoprotein CDO11_02485 PF00692 dUTPase CDO11_02490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_02490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_02490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_02490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_02500 PF07578 Lipid A Biosynthesis N-terminal domain CDO11_02505 PF00535 Glycosyl transferase family 2 CDO11_02510 PF01370 NAD dependent epimerase/dehydratase family CDO11_02515 PF11731 CDO11_02515 CDO11_02520 PF02195 ParB-like nuclease domain CDO11_02525 PF13614 AAA domain CDO11_02535 PF00156 Phosphoribosyl transferase domain CDO11_02540 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_02545 PF07690 Major Facilitator Superfamily CDO11_02555 PF03702 Uncharacterised protein family (UPF0075) CDO11_02560 PF01551 Peptidase family M23 CDO11_02560 PF04225 Opacity-associated protein A LysM-like domain CDO11_02565 PF00579 tRNA synthetases class I (W and Y) CDO11_02600 PF00072 Response regulator receiver domain CDO11_02600 PF00512 His Kinase A (phospho-acceptor) domain CDO11_02600 PF01627 Hpt domain CDO11_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_02605 PF00072 Response regulator receiver domain CDO11_02605 PF00563 EAL domain CDO11_02605 PF00990 GGDEF domain CDO11_02610 PF13548 CDO11_02610 CDO11_02620 PF04519 CDO11_02620 CDO11_02625 PF04519 CDO11_02625 CDO11_02630 PF13340 CDO11_02630 CDO11_02635 PF13586 CDO11_02635 CDO11_02640 PF01521 Iron-sulphur cluster biosynthesis CDO11_02645 PF03583 Secretory lipase CDO11_02650 PF00293 NUDIX domain CDO11_02650 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDO11_02650 PF09297 NADH pyrophosphatase zinc ribbon domain CDO11_02655 PF03186 CDO11_02655 CDO11_02660 PF10825 CDO11_02660 CDO11_02665 PF04505 CDO11_02665 CDO11_02675 PF01553 Acyltransferase CDO11_02675 PF07690 Major Facilitator Superfamily CDO11_02690 PF12805 CDO11_02690 CDO11_02690 PF13515 CDO11_02690 CDO11_02695 PF14103 CDO11_02695 CDO11_02700 PF13304 AAA domain CDO11_02705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDO11_02705 PF02843 Phosphoribosylglycinamide synthetase, C domain CDO11_02705 PF02844 Phosphoribosylglycinamide synthetase, N domain CDO11_02710 PF14103 CDO11_02710 CDO11_02715 PF13304 AAA domain CDO11_02720 PF01808 AICARFT/IMPCHase bienzyme CDO11_02720 PF02142 MGS-like domain CDO11_02735 PF12146 Putative lysophospholipase CDO11_02745 PF12147 CDO11_02745 CDO11_02755 PF12760 Transposase zinc-ribbon domain CDO11_02755 PF12762 CDO11_02755 CDO11_02760 PF13546 CDO11_02760 CDO11_02765 PF02954 Bacterial regulatory protein, Fis family CDO11_02770 PF11906 CDO11_02770 CDO11_02780 PF01381 Helix-turn-helix CDO11_02795 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CDO11_02815 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CDO11_02815 PF02785 Biotin carboxylase C-terminal domain CDO11_02815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_02820 PF05635 23S rRNA-intervening sequence protein CDO11_02825 PF00364 Biotin-requiring enzyme CDO11_02830 PF01220 Dehydroquinase class II CDO11_02840 PF02683 CDO11_02840 CDO11_02840 PF11412 Disulphide bond corrector protein DsbC CDO11_02840 PF13899 Thioredoxin-like CDO11_02845 PF03091 CutA1 divalent ion tolerance protein CDO11_02850 PF12760 Transposase zinc-ribbon domain CDO11_02850 PF12762 CDO11_02850 CDO11_02860 PF13546 CDO11_02860 CDO11_02870 PF01548 CDO11_02870 CDO11_02875 PF00270 DEAD/DEAH box helicase CDO11_02875 PF00271 Helicase conserved C-terminal domain CDO11_02885 PF11304 CDO11_02885 CDO11_02900 PF01554 MatE CDO11_02905 PF01343 Peptidase family S49 CDO11_02915 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_02930 PF01300 Telomere recombination CDO11_02935 PF01131 DNA topoisomerase CDO11_02935 PF01751 Toprim domain CDO11_02935 PF13368 CDO11_02935 CDO11_02940 PF06271 CDO11_02940 CDO11_02940 PF14237 CDO11_02940 CDO11_02945 PF00114 Pilin (bacterial filament) CDO11_02945 PF14237 CDO11_02945 CDO11_02950 PF04361 CDO11_02950 CDO11_02955 PF02481 DNA recombination-mediator protein A CDO11_02960 PF01476 LysM domain CDO11_02965 PF01327 Polypeptide deformylase CDO11_02970 PF00551 Formyl transferase CDO11_02970 PF02911 Formyl transferase, C-terminal domain CDO11_02975 PF01029 NusB family CDO11_02975 PF01189 NOL1/NOP2/sun family CDO11_02980 PF13231 CDO11_02980 CDO11_02985 PF04932 CDO11_02985 CDO11_02990 PF00535 Glycosyl transferase family 2 CDO11_02995 PF02350 UDP-N-acetylglucosamine 2-epimerase CDO11_03000 PF03703 CDO11_03000 CDO11_03005 PF03703 CDO11_03005 CDO11_03010 PF00925 GTP cyclohydrolase II CDO11_03015 PF13420 Acetyltransferase (GNAT) domain CDO11_03025 PF03279 CDO11_03025 CDO11_03030 PF02580 D-Tyr-tRNA(Tyr) deacylase CDO11_03035 PF00140 Sigma-70 factor, region 1 CDO11_03035 PF03979 Sigma-70 factor, region 1 CDO11_03035 PF04539 Sigma-70 region 3 CDO11_03035 PF04542 Sigma-70 region 2 CDO11_03035 PF04545 Sigma-70, region 4 CDO11_03035 PF04546 Sigma-70, non-essential region CDO11_03050 PF00589 Phage integrase family CDO11_03070 PF07996 Type IV secretion system proteins CDO11_03085 PF04610 CDO11_03085 CDO11_03110 PF03852 DNA mismatch endonuclease Vsr CDO11_03115 PF00145 C-5 cytosine-specific DNA methylase CDO11_03165 PF01610 CDO11_03165 CDO11_03165 PF13542 CDO11_03165 CDO11_03195 PF00005 ABC transporter CDO11_03200 PF12040 CDO11_03200 CDO11_03200 PF12679 CDO11_03200 CDO11_03205 PF12040 CDO11_03205 CDO11_03210 PF00593 TonB dependent receptor CDO11_03210 PF07715 TonB-dependent Receptor Plug Domain CDO11_03215 PF11445 CDO11_03215 CDO11_03220 PF00691 OmpA family CDO11_03225 PF05650 CDO11_03225 CDO11_03230 PF11828 CDO11_03230 CDO11_03245 PF03692 CDO11_03245 CDO11_03250 PF00107 Zinc-binding dehydrogenase CDO11_03265 PF02322 CDO11_03265 CDO11_03270 PF01654 CDO11_03270 CDO11_03285 PF00072 Response regulator receiver domain CDO11_03285 PF00158 Sigma-54 interaction domain CDO11_03285 PF02954 Bacterial regulatory protein, Fis family CDO11_03300 PF01339 CheB methylesterase CDO11_03300 PF01739 CheR methyltransferase, SAM binding domain CDO11_03300 PF03705 CheR methyltransferase, all-alpha domain CDO11_03310 PF01266 FAD dependent oxidoreductase CDO11_03320 PF06580 CDO11_03320 CDO11_03335 PF13520 Amino acid permease CDO11_03350 PF09995 CDO11_03350 CDO11_03355 PF01431 Peptidase family M13 CDO11_03355 PF05649 Peptidase family M13 CDO11_03360 PF00535 Glycosyl transferase family 2 CDO11_03370 PF00248 Aldo/keto reductase family CDO11_03375 PF03358 NADPH-dependent FMN reductase CDO11_03380 PF07681 CDO11_03380 CDO11_03385 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_03390 PF04055 Radical SAM superfamily CDO11_03395 PF03167 Uracil DNA glycosylase superfamily CDO11_03395 PF13566 CDO11_03395 CDO11_03405 PF02469 Fasciclin domain CDO11_03420 PF00999 Sodium/hydrogen exchanger family CDO11_03425 PF00005 ABC transporter CDO11_03430 PF01061 CDO11_03430 CDO11_03435 PF11730 CDO11_03435 CDO11_03445 PF00082 Subtilase family CDO11_03445 PF04151 Bacterial pre-peptidase C-terminal domain CDO11_03450 PF03895 YadA-like C-terminal region CDO11_03450 PF05658 Head domain of trimeric autotransporter adhesin CDO11_03450 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO11_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_03460 PF00072 Response regulator receiver domain CDO11_03460 PF00486 Transcriptional regulatory protein, C terminal CDO11_03465 PF13223 CDO11_03465 CDO11_03480 PF00691 OmpA family CDO11_03480 PF13677 CDO11_03480 CDO11_03485 PF01618 CDO11_03485 CDO11_03490 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CDO11_03495 PF01641 SelR domain CDO11_03505 PF01037 AsnC family CDO11_03505 PF13404 AsnC-type helix-turn-helix domain CDO11_03510 PF01266 FAD dependent oxidoreductase CDO11_03515 PF00842 Alanine racemase, C-terminal domain CDO11_03515 PF01168 Alanine racemase, N-terminal domain CDO11_03520 PF11454 CDO11_03520 CDO11_03535 PF00072 Response regulator receiver domain CDO11_03535 PF00512 His Kinase A (phospho-acceptor) domain CDO11_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_03535 PF08448 PAS fold CDO11_03535 PF13188 PAS domain CDO11_03545 PF11607 Protein of unknown function (DUF3247) CDO11_03550 PF07995 Glucose / Sorbosone dehydrogenase CDO11_03570 PF05175 Methyltransferase small domain CDO11_03575 PF00849 RNA pseudouridylate synthase CDO11_03580 PF13419 Haloacid dehalogenase-like hydrolase CDO11_03585 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_03590 PF07209 CDO11_03590 CDO11_03610 PF04461 Protein of unknown function (DUF520) CDO11_03615 PF00892 EamA-like transporter family CDO11_03620 PF00005 ABC transporter CDO11_03620 PF09383 NIL domain CDO11_03625 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_03630 PF03180 NLPA lipoprotein CDO11_03635 PF07301 CDO11_03635 CDO11_03640 PF03922 OmpW family CDO11_03645 PF03167 Uracil DNA glycosylase superfamily CDO11_03650 PF11101 CDO11_03650 CDO11_03655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_03655 PF00364 Biotin-requiring enzyme CDO11_03655 PF02817 e3 binding domain CDO11_03665 PF00364 Biotin-requiring enzyme CDO11_03665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_03665 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_03685 PF00119 ATP synthase A chain CDO11_03690 PF00137 ATP synthase subunit C CDO11_03695 PF00430 ATP synthase B/B' CF(0) CDO11_03700 PF00213 ATP synthase delta (OSCP) subunit CDO11_03705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_03705 PF00306 ATP synthase alpha/beta chain, C terminal domain CDO11_03705 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_03710 PF00231 ATP synthase CDO11_03715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_03715 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO11_03720 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDO11_03725 PF01817 Chorismate mutase type II CDO11_03735 PF04138 CDO11_03735 CDO11_03740 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_03740 PF12804 MobA-like NTP transferase domain CDO11_03740 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_03750 PF13340 CDO11_03750 CDO11_03755 PF12760 Transposase zinc-ribbon domain CDO11_03755 PF12762 CDO11_03755 CDO11_03760 PF13586 CDO11_03760 CDO11_03770 PF00005 ABC transporter CDO11_03775 PF16576 CDO11_03775 CDO11_03780 PF01380 SIS domain CDO11_03780 PF13522 Glutamine amidotransferase domain CDO11_03795 PF13340 CDO11_03795 CDO11_03800 PF13586 CDO11_03800 CDO11_03805 PF13358 DDE superfamily endonuclease CDO11_03805 PF13551 Winged helix-turn helix CDO11_03805 PF13592 CDO11_03805 CDO11_03815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_03820 PF05275 CDO11_03820 CDO11_03825 PF00394 Multicopper oxidase CDO11_03825 PF07731 Multicopper oxidase CDO11_03825 PF07732 Multicopper oxidase CDO11_03835 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_03840 PF01432 Peptidase family M3 CDO11_03850 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_03850 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_03855 PF07977 FabA-like domain CDO11_03865 PF00817 impB/mucB/samB family CDO11_03865 PF11799 impB/mucB/samB family C-terminal domain CDO11_03870 PF13419 Haloacid dehalogenase-like hydrolase CDO11_03875 PF04994 TfoX C-terminal domain CDO11_03880 PF13185 GAF domain CDO11_03885 PF13500 AAA domain CDO11_03890 PF09361 CDO11_03890 CDO11_03895 PF01242 6-pyruvoyl tetrahydropterin synthase CDO11_03905 PF00270 DEAD/DEAH box helicase CDO11_03905 PF00271 Helicase conserved C-terminal domain CDO11_03915 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_03920 PF13417 Glutathione S-transferase, N-terminal domain CDO11_03925 PF00437 Type II/IV secretion system protein CDO11_03930 PF14346 Domain of unknown function (DUF4398) CDO11_03940 PF04325 Protein of unknown function (DUF465) CDO11_03945 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_03945 PF00571 CBS domain CDO11_03950 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_03955 PF05050 Methyltransferase FkbM domain CDO11_03960 PF01370 NAD dependent epimerase/dehydratase family CDO11_03965 PF00534 Glycosyl transferases group 1 CDO11_03975 PF00535 Glycosyl transferase family 2 CDO11_03980 PF01757 CDO11_03980 CDO11_03985 PF13546 CDO11_03985 CDO11_04000 PF00005 ABC transporter CDO11_04000 PF14524 Wzt C-terminal domain CDO11_04005 PF01061 CDO11_04005 CDO11_04010 PF00766 Electron transfer flavoprotein FAD-binding domain CDO11_04010 PF01012 Electron transfer flavoprotein domain CDO11_04015 PF01012 Electron transfer flavoprotein domain CDO11_04020 PF16363 CDO11_04020 CDO11_04025 PF00483 Nucleotidyl transferase CDO11_04030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO11_04035 PF04321 RmlD substrate binding domain CDO11_04040 PF00483 Nucleotidyl transferase CDO11_04040 PF01050 Mannose-6-phosphate isomerase CDO11_04045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_04045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_04045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_04045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_04050 PF01144 Coenzyme A transferase CDO11_04055 PF01144 Coenzyme A transferase CDO11_04060 PF01609 Transposase DDE domain CDO11_04060 PF05598 CDO11_04060 CDO11_04065 PF05045 CDO11_04065 CDO11_04065 PF14307 CDO11_04065 CDO11_04070 PF01946 Thi4 family CDO11_04070 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CDO11_04075 PF13532 2OG-Fe(II) oxygenase superfamily CDO11_04085 PF03886 Protein of unknown function (DUF330) CDO11_04090 PF02470 CDO11_04090 CDO11_04095 PF00005 ABC transporter CDO11_04100 PF02405 CDO11_04100 CDO11_04105 PF06738 CDO11_04105 CDO11_04105 PF12821 CDO11_04105 CDO11_04110 PF00816 H-NS histone family CDO11_04115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_04115 PF03129 Anticodon binding domain CDO11_04115 PF04073 Aminoacyl-tRNA editing domain CDO11_04120 PF13511 CDO11_04120 CDO11_04125 PF01066 CDP-alcohol phosphatidyltransferase CDO11_04135 PF00583 Acetyltransferase (GNAT) family CDO11_04140 PF13546 CDO11_04140 CDO11_04145 PF13546 CDO11_04145 CDO11_04150 PF01609 Transposase DDE domain CDO11_04150 PF05598 CDO11_04150 CDO11_04155 PF13546 CDO11_04155 CDO11_04160 PF01464 Transglycosylase SLT domain CDO11_04160 PF14718 Soluble lytic murein transglycosylase L domain CDO11_04185 PF08241 Methyltransferase domain CDO11_04195 PF05598 CDO11_04195 CDO11_04200 PF04191 Phospholipid methyltransferase CDO11_04205 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_04205 PF08264 Anticodon-binding domain of tRNA CDO11_04205 PF10458 Valyl tRNA synthetase tRNA binding arm CDO11_04210 PF04364 DNA polymerase III chi subunit, HolC CDO11_04220 PF00883 Cytosol aminopeptidase family, catalytic domain CDO11_04220 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO11_04225 PF03739 CDO11_04225 CDO11_04230 PF03739 CDO11_04230 CDO11_04240 PF06271 CDO11_04240 CDO11_04245 PF00589 Phage integrase family CDO11_04245 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_04250 PF10411 Disulfide bond isomerase protein N-terminus CDO11_04250 PF13098 Thioredoxin-like domain CDO11_04260 PF02769 AIR synthase related protein, C-terminal domain CDO11_04260 PF13507 CobB/CobQ-like glutamine amidotransferase domain CDO11_04270 PF03895 YadA-like C-terminal region CDO11_04270 PF05658 Head domain of trimeric autotransporter adhesin CDO11_04270 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO11_04270 PF13018 CDO11_04270 CDO11_04280 PF00665 Integrase core domain CDO11_04280 PF13936 Helix-turn-helix domain CDO11_04285 PF00082 Subtilase family CDO11_04285 PF04151 Bacterial pre-peptidase C-terminal domain CDO11_04290 PF00437 Type II/IV secretion system protein CDO11_04290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_04300 PF00482 Type II secretion system (T2SS), protein F CDO11_04305 PF08334 Type II secretion system (T2SS), protein G CDO11_04310 PF12019 Type II transport protein GspH CDO11_04315 PF07963 Prokaryotic N-terminal methylation motif CDO11_04325 PF03934 Type II secretion system (T2SS), protein K CDO11_04330 PF05137 CDO11_04330 CDO11_04335 PF10741 CDO11_04335 CDO11_04345 PF00263 CDO11_04345 CDO11_04345 PF03958 Bacterial type II/III secretion system short domain CDO11_04360 PF00392 Bacterial regulatory proteins, gntR family CDO11_04360 PF07702 UTRA domain CDO11_04365 PF04973 CDO11_04365 CDO11_04375 PF00593 TonB dependent receptor CDO11_04375 PF07715 TonB-dependent Receptor Plug Domain CDO11_04380 PF01636 Phosphotransferase enzyme family CDO11_04390 PF00535 Glycosyl transferase family 2 CDO11_04400 PF13358 DDE superfamily endonuclease CDO11_04405 PF01609 Transposase DDE domain CDO11_04405 PF05598 CDO11_04405 CDO11_04410 PF09827 CRISPR associated protein Cas2 CDO11_04415 PF01867 CRISPR associated protein Cas1 CDO11_04420 PF01930 Domain of unknown function DUF83 CDO11_04425 PF05107 CDO11_04425 CDO11_04430 PF09709 CDO11_04430 CDO11_04435 PF09704 CRISPR-associated protein (Cas_Cas5) CDO11_04440 PF00270 DEAD/DEAH box helicase CDO11_04445 PF12760 Transposase zinc-ribbon domain CDO11_04445 PF12762 CDO11_04445 CDO11_04455 PF02545 Maf-like protein CDO11_04460 PF02620 CDO11_04460 CDO11_04465 PF01783 Ribosomal L32p protein family CDO11_04470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_04470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_04475 PF08670 CDO11_04475 CDO11_04480 PF00698 Acyl transferase domain CDO11_04485 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_04490 PF00550 Phosphopantetheine attachment site CDO11_04495 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO11_04495 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO11_04500 PF00425 chorismate binding enzyme CDO11_04500 PF04715 Anthranilate synthase component I, N terminal region CDO11_04505 PF02618 YceG-like family CDO11_04510 PF13177 DNA polymerase III, delta subunit CDO11_04515 PF07238 PilZ domain CDO11_04535 PF00158 Sigma-54 interaction domain CDO11_04535 PF02954 Bacterial regulatory protein, Fis family CDO11_04535 PF06506 Propionate catabolism activator CDO11_04540 PF13714 Phosphoenolpyruvate phosphomutase CDO11_04545 PF00285 Citrate synthase CDO11_04550 PF00330 Aconitase family (aconitate hydratase) CDO11_04550 PF00694 Aconitase C-terminal domain CDO11_04560 PF04303 PrpF protein CDO11_04565 PF00593 TonB dependent receptor CDO11_04565 PF07715 TonB-dependent Receptor Plug Domain CDO11_04570 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO11_04585 PF00593 TonB dependent receptor CDO11_04585 PF07715 TonB-dependent Receptor Plug Domain CDO11_04590 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_04590 PF16387 CDO11_04590 CDO11_04600 PF13546 CDO11_04600 CDO11_04610 PF00665 Integrase core domain CDO11_04615 PF00210 Ferritin-like domain CDO11_04620 PF08534 Redoxin CDO11_04625 PF00011 Hsp20/alpha crystallin family CDO11_04630 PF00226 DnaJ domain CDO11_04630 PF01556 DnaJ C terminal domain CDO11_04635 PF00072 Response regulator receiver domain CDO11_04640 PF01145 SPFH domain / Band 7 family CDO11_04645 PF01145 SPFH domain / Band 7 family CDO11_04650 PF09838 CDO11_04650 CDO11_04655 PF00709 Adenylosuccinate synthetase CDO11_04660 PF01433 Peptidase family M1 CDO11_04660 PF11838 ERAP1-like C-terminal domain CDO11_04665 PF08845 CDO11_04665 CDO11_04665 PF12760 Transposase zinc-ribbon domain CDO11_04670 PF01609 Transposase DDE domain CDO11_04670 PF05598 CDO11_04670 CDO11_04685 PF10882 CDO11_04685 CDO11_04690 PF10276 Zinc-finger domain CDO11_04695 PF00534 Glycosyl transferases group 1 CDO11_04695 PF13439 Glycosyltransferase Family 4 CDO11_04700 PF04932 CDO11_04700 CDO11_04705 PF03279 CDO11_04705 CDO11_04710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDO11_04715 PF02321 Outer membrane efflux protein CDO11_04720 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CDO11_04725 PF00440 Bacterial regulatory proteins, tetR family CDO11_04725 PF14246 AefR-like transcriptional repressor, C-terminal region CDO11_04730 PF07494 Two component regulator propeller CDO11_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_04740 PF03466 LysR substrate binding domain CDO11_04745 PF00330 Aconitase family (aconitate hydratase) CDO11_04750 PF00694 Aconitase C-terminal domain CDO11_04760 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_04765 PF00682 HMGL-like CDO11_04765 PF08502 LeuA allosteric (dimerisation) domain CDO11_04770 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_04775 PF13710 ACT domain CDO11_04780 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_04780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_04780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_04785 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDO11_04785 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CDO11_04795 PF01964 ThiC family CDO11_04795 PF13667 ThiC-associated domain CDO11_04800 PF00486 Transcriptional regulatory protein, C terminal CDO11_04800 PF07676 WD40-like Beta Propeller Repeat CDO11_04805 PF12833 Helix-turn-helix domain CDO11_04810 PF00593 TonB dependent receptor CDO11_04810 PF07715 TonB-dependent Receptor Plug Domain CDO11_04820 PF08668 HDOD domain CDO11_04825 PF00719 Inorganic pyrophosphatase CDO11_04840 PF12760 Transposase zinc-ribbon domain CDO11_04840 PF12762 CDO11_04840 CDO11_04855 PF13546 CDO11_04855 CDO11_04860 PF00365 Phosphofructokinase CDO11_04865 PF00406 Adenylate kinase CDO11_04870 PF01225 Mur ligase family, catalytic domain CDO11_04870 PF02875 Mur ligase family, glutamate ligase domain CDO11_04870 PF08245 Mur ligase middle domain CDO11_04875 PF02190 ATP-dependent protease La (LON) domain CDO11_04880 PF01062 CDO11_04880 CDO11_04895 PF00043 Glutathione S-transferase, C-terminal domain CDO11_04895 PF02798 Glutathione S-transferase, N-terminal domain CDO11_04900 PF00056 lactate/malate dehydrogenase, NAD binding domain CDO11_04900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDO11_04905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO11_04910 PF00009 Elongation factor Tu GTP binding domain CDO11_04910 PF00679 Elongation factor G C-terminus CDO11_04910 PF03144 Elongation factor Tu domain 2 CDO11_04915 PF09900 CDO11_04915 CDO11_04925 PF00924 Mechanosensitive ion channel CDO11_04930 PF01474 Class-II DAHP synthetase family CDO11_04935 PF00593 TonB dependent receptor CDO11_04935 PF07715 TonB-dependent Receptor Plug Domain CDO11_04940 PF02600 Disulfide bond formation protein DsbB CDO11_04960 PF01610 CDO11_04960 CDO11_04960 PF13542 CDO11_04960 CDO11_04970 PF00089 Trypsin CDO11_04990 PF01609 Transposase DDE domain CDO11_04990 PF05598 CDO11_04990 CDO11_05010 PF01610 CDO11_05010 CDO11_05010 PF13542 CDO11_05010 CDO11_05020 PF13546 CDO11_05020 CDO11_05030 PF00665 Integrase core domain CDO11_05030 PF13936 Helix-turn-helix domain CDO11_05040 PF12760 Transposase zinc-ribbon domain CDO11_05040 PF12762 CDO11_05040 CDO11_05050 PF01609 Transposase DDE domain CDO11_05055 PF13340 CDO11_05055 CDO11_05070 PF01609 Transposase DDE domain CDO11_05070 PF05598 CDO11_05070 CDO11_05075 PF07486 Cell Wall Hydrolase CDO11_05080 PF16387 CDO11_05080 CDO11_05085 PF13586 CDO11_05085 CDO11_05090 PF13340 CDO11_05090 CDO11_05095 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_05115 PF12760 Transposase zinc-ribbon domain CDO11_05115 PF12762 CDO11_05115 CDO11_05120 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO11_05125 PF12811 CDO11_05125 CDO11_05175 PF05697 Bacterial trigger factor protein (TF) CDO11_05175 PF05698 Bacterial trigger factor protein (TF) C-terminus CDO11_05180 PF00574 Clp protease CDO11_05185 PF06689 ClpX C4-type zinc finger CDO11_05185 PF07724 AAA domain (Cdc48 subfamily) CDO11_05185 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_05190 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_05190 PF02190 ATP-dependent protease La (LON) domain CDO11_05190 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO11_05195 PF00216 Bacterial DNA-binding protein CDO11_05215 PF13616 PPIC-type PPIASE domain CDO11_05215 PF13623 CDO11_05215 CDO11_05220 PF01464 Transglycosylase SLT domain CDO11_05220 PF01476 LysM domain CDO11_05225 PF00753 Metallo-beta-lactamase superfamily CDO11_05225 PF16123 CDO11_05225 CDO11_05235 PF00075 RNase H CDO11_05240 PF00929 Exonuclease CDO11_05250 PF13672 Protein phosphatase 2C CDO11_05280 PF11678 CDO11_05280 CDO11_05285 PF11394 CDO11_05285 CDO11_05295 PF11678 CDO11_05295 CDO11_05300 PF11394 CDO11_05300 CDO11_05305 PF05488 PAAR motif CDO11_05310 PF11678 CDO11_05310 CDO11_05315 PF11394 CDO11_05315 CDO11_05320 PF05488 PAAR motif CDO11_05330 PF12760 Transposase zinc-ribbon domain CDO11_05330 PF12762 CDO11_05330 CDO11_05335 PF00589 Phage integrase family CDO11_05345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CDO11_05350 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family CDO11_05355 PF12706 Beta-lactamase superfamily domain CDO11_05360 PF04055 Radical SAM superfamily CDO11_05360 PF06463 Molybdenum Cofactor Synthesis C CDO11_05360 PF13353 4Fe-4S single cluster domain CDO11_05365 PF14534 Domain of unknown function (DUF4440) CDO11_05370 PF01967 MoaC family CDO11_05375 PF02597 ThiS family CDO11_05380 PF02391 MoaE protein CDO11_05395 PF12169 DNA polymerase III subunits gamma and tau domain III CDO11_05395 PF12170 DNA polymerase III tau subunit V interacting with alpha CDO11_05395 PF13177 DNA polymerase III, delta subunit CDO11_05400 PF02575 YbaB/EbfC DNA-binding family CDO11_05405 PF02132 RecR protein CDO11_05405 PF13662 Toprim domain CDO11_05410 PF01230 HIT domain CDO11_05415 PF03843 CDO11_05415 CDO11_05420 PF01841 Transglutaminase-like superfamily CDO11_05420 PF11992 CDO11_05420 CDO11_05425 PF01882 CDO11_05425 CDO11_05430 PF07726 ATPase family associated with various cellular activities (AAA) CDO11_05435 PF13231 CDO11_05435 CDO11_05450 PF01327 Polypeptide deformylase CDO11_05470 PF01670 Glycosyl hydrolase family 12 CDO11_05480 PF09284 Rhamnogalacturonase B, N-terminal CDO11_05480 PF14683 Polysaccharide lyase family 4, domain III CDO11_05480 PF14686 Polysaccharide lyase family 4, domain II CDO11_05490 PF01610 CDO11_05490 CDO11_05490 PF13542 CDO11_05490 CDO11_05500 PF01609 Transposase DDE domain CDO11_05500 PF05598 CDO11_05500 CDO11_05510 PF14487 CDO11_05510 CDO11_05515 PF13546 CDO11_05515 CDO11_05520 PF14487 CDO11_05520 CDO11_05525 PF00462 Glutaredoxin CDO11_05525 PF00581 Rhodanese-like domain CDO11_05530 PF01522 Polysaccharide deacetylase CDO11_05540 PF08242 Methyltransferase domain CDO11_05545 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_05550 PF00155 Aminotransferase class I and II CDO11_05555 PF03193 Protein of unknown function, DUF258 CDO11_05560 PF08014 CDO11_05560 CDO11_05565 PF01965 DJ-1/PfpI family CDO11_05570 PF00128 Alpha amylase, catalytic domain CDO11_05575 PF00593 TonB dependent receptor CDO11_05575 PF07715 TonB-dependent Receptor Plug Domain CDO11_05580 PF07690 Major Facilitator Superfamily CDO11_05590 PF00356 Bacterial regulatory proteins, lacI family CDO11_05590 PF13377 Periplasmic binding protein-like domain CDO11_05595 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_05600 PF03600 Citrate transporter CDO11_05605 PF07396 Phosphate-selective porin O and P CDO11_05610 PF00072 Response regulator receiver domain CDO11_05610 PF00486 Transcriptional regulatory protein, C terminal CDO11_05615 PF00512 His Kinase A (phospho-acceptor) domain CDO11_05615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_05615 PF08521 CDO11_05615 CDO11_05620 PF13531 Bacterial extracellular solute-binding protein CDO11_05625 PF00072 Response regulator receiver domain CDO11_05625 PF00196 Bacterial regulatory proteins, luxR family CDO11_05630 PF12680 SnoaL-like domain CDO11_05635 PF00248 Aldo/keto reductase family CDO11_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_05640 PF03466 LysR substrate binding domain CDO11_05645 PF13531 Bacterial extracellular solute-binding protein CDO11_05650 PF00083 Sugar (and other) transporter CDO11_05655 PF00072 Response regulator receiver domain CDO11_05655 PF00512 His Kinase A (phospho-acceptor) domain CDO11_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_05655 PF02743 Cache domain CDO11_05655 PF12860 CDO11_05655 CDO11_05665 PF07396 Phosphate-selective porin O and P CDO11_05670 PF00375 Sodium:dicarboxylate symporter family CDO11_05675 PF00390 Malic enzyme, N-terminal domain CDO11_05675 PF01515 Phosphate acetyl/butaryl transferase CDO11_05675 PF03949 Malic enzyme, NAD binding domain CDO11_05705 PF02581 Thiamine monophosphate synthase/TENI CDO11_05710 PF00301 Rubredoxin CDO11_05715 PF13369 CDO11_05715 CDO11_05715 PF13371 Tetratricopeptide repeat CDO11_05720 PF02643 Uncharacterized ACR, COG1430 CDO11_05725 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDO11_05730 PF01878 EVE domain CDO11_05735 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDO11_05745 PF05164 Cell division protein ZapA CDO11_05755 PF03695 Uncharacterised protein family (UPF0149) CDO11_05760 PF00557 Metallopeptidase family M24 CDO11_05760 PF05195 Aminopeptidase P, N-terminal domain CDO11_05770 PF13586 CDO11_05770 CDO11_05775 PF13340 CDO11_05775 CDO11_05785 PF00557 Metallopeptidase family M24 CDO11_05790 PF07238 PilZ domain CDO11_05795 PF07793 CDO11_05795 CDO11_05800 PF04055 Radical SAM superfamily CDO11_05800 PF06969 HemN C-terminal domain CDO11_05805 PF01725 Ham1 family CDO11_05810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_05815 PF01138 3' exoribonuclease family, domain 1 CDO11_05815 PF03725 3' exoribonuclease family, domain 2 CDO11_05820 PF03755 CDO11_05820 CDO11_05820 PF08340 CDO11_05820 CDO11_05825 PF00625 Guanylate kinase CDO11_05840 PF01192 RNA polymerase Rpb6 CDO11_05845 PF02824 TGS domain CDO11_05845 PF04607 Region found in RelA / SpoT proteins CDO11_05845 PF13291 ACT domain CDO11_05845 PF13328 HD domain CDO11_05850 PF01042 Endoribonuclease L-PSP CDO11_05855 PF00270 DEAD/DEAH box helicase CDO11_05855 PF00271 Helicase conserved C-terminal domain CDO11_05855 PF17191 CDO11_05855 CDO11_05860 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO11_05865 PF01197 Ribosomal protein L31 CDO11_05870 PF00285 Citrate synthase CDO11_05880 PF00905 Penicillin binding protein transpeptidase domain CDO11_05880 PF00912 Transglycosylase CDO11_05880 PF17092 CDO11_05880 CDO11_05885 PF11104 Type IV pilus assembly protein PilM; CDO11_05890 PF05137 CDO11_05890 CDO11_05895 PF04350 Pilus assembly protein, PilO CDO11_05900 PF04351 Pilus assembly protein, PilP CDO11_05905 PF00263 CDO11_05905 CDO11_05905 PF03958 Bacterial type II/III secretion system short domain CDO11_05905 PF07660 Secretin and TonB N terminus short domain CDO11_05915 PF01610 CDO11_05915 CDO11_05915 PF13542 CDO11_05915 CDO11_05925 PF12760 Transposase zinc-ribbon domain CDO11_05935 PF01882 CDO11_05935 CDO11_05940 PF14316 CDO11_05940 CDO11_05945 PF00092 von Willebrand factor type A domain CDO11_05950 PF00515 Tetratricopeptide repeat CDO11_05950 PF13519 von Willebrand factor type A domain CDO11_05955 PF13584 CDO11_05955 CDO11_05965 PF12395 CDO11_05965 CDO11_05970 PF00375 Sodium:dicarboxylate symporter family CDO11_05975 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_05975 PF02779 Transketolase, pyrimidine binding domain CDO11_05975 PF02780 Transketolase, C-terminal domain CDO11_05985 PF01551 Peptidase family M23 CDO11_05990 PF01471 Putative peptidoglycan binding domain CDO11_05990 PF03734 L,D-transpeptidase catalytic domain CDO11_05995 PF00593 TonB dependent receptor CDO11_05995 PF07715 TonB-dependent Receptor Plug Domain CDO11_06000 PF16670 CDO11_06000 CDO11_06005 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDO11_06010 PF12261 CDO11_06010 CDO11_06015 PF00501 AMP-binding enzyme CDO11_06020 PF14518 Iron-containing redox enzyme CDO11_06025 PF00106 short chain dehydrogenase CDO11_06040 PF00072 Response regulator receiver domain CDO11_06040 PF00486 Transcriptional regulatory protein, C terminal CDO11_06045 PF00512 His Kinase A (phospho-acceptor) domain CDO11_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_06045 PF08521 CDO11_06045 CDO11_06050 PF03965 Penicillinase repressor CDO11_06055 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_06055 PF05569 BlaR1 peptidase M56 CDO11_06065 PF00005 ABC transporter CDO11_06070 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_06075 PF13531 Bacterial extracellular solute-binding protein CDO11_06080 PF00753 Metallo-beta-lactamase superfamily CDO11_06085 PF02265 S1/P1 Nuclease CDO11_06115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO11_06115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDO11_06125 PF13340 CDO11_06125 CDO11_06130 PF13586 CDO11_06130 CDO11_06135 PF12760 Transposase zinc-ribbon domain CDO11_06135 PF12762 CDO11_06135 CDO11_06145 PF00072 Response regulator receiver domain CDO11_06145 PF00486 Transcriptional regulatory protein, C terminal CDO11_06155 PF08443 RimK-like ATP-grasp domain CDO11_06160 PF01609 Transposase DDE domain CDO11_06160 PF05598 CDO11_06160 CDO11_06165 PF01569 PAP2 superfamily CDO11_06165 PF09335 CDO11_06165 CDO11_06165 PF14067 CDO11_06165 CDO11_06185 PF12889 Protein of unknown function (DUF3829) CDO11_06190 PF12889 Protein of unknown function (DUF3829) CDO11_06195 PF00520 Ion transport protein CDO11_06200 PF00202 Aminotransferase class-III CDO11_06205 PF13419 Haloacid dehalogenase-like hydrolase CDO11_06215 PF01593 Flavin containing amine oxidoreductase CDO11_06220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO11_06225 PF01042 Endoribonuclease L-PSP CDO11_06235 PF00127 Copper binding proteins, plastocyanin/azurin family CDO11_06245 PF00202 Aminotransferase class-III CDO11_06265 PF00665 Integrase core domain CDO11_06265 PF13936 Helix-turn-helix domain CDO11_06270 PF00665 Integrase core domain CDO11_06270 PF13276 CDO11_06270 CDO11_06275 PF01527 Transposase CDO11_06295 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_06315 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_06330 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_06350 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDO11_06360 PF01761 3-dehydroquinate synthase CDO11_06365 PF01202 Shikimate kinase CDO11_06370 PF01243 Pyridoxamine 5'-phosphate oxidase CDO11_06370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDO11_06375 PF09938 CDO11_06375 CDO11_06380 PF04012 CDO11_06380 CDO11_06385 PF07885 Ion channel CDO11_06390 PF10679 CDO11_06390 CDO11_06395 PF03994 CDO11_06395 CDO11_06400 PF06693 CDO11_06400 CDO11_06405 PF03738 Glutathionylspermidine synthase preATP-grasp CDO11_06420 PF07690 Major Facilitator Superfamily CDO11_06430 PF00376 MerR family regulatory protein CDO11_06430 PF09278 MerR, DNA binding CDO11_06435 PF01433 Peptidase family M1 CDO11_06440 PF00593 TonB dependent receptor CDO11_06440 PF07715 TonB-dependent Receptor Plug Domain CDO11_06450 PF07277 CDO11_06450 CDO11_06455 PF13621 Cupin-like domain CDO11_06460 PF04820 Tryptophan halogenase CDO11_06465 PF12706 Beta-lactamase superfamily domain CDO11_06480 PF13365 Trypsin-like peptidase domain CDO11_06485 PF13520 Amino acid permease CDO11_06490 PF00196 Bacterial regulatory proteins, luxR family CDO11_06490 PF03472 Autoinducer binding domain CDO11_06495 PF00561 alpha/beta hydrolase fold CDO11_06505 PF00324 Amino acid permease CDO11_06510 PF01610 CDO11_06510 CDO11_06510 PF13542 CDO11_06510 CDO11_06515 PF01654 CDO11_06515 CDO11_06520 PF02322 CDO11_06520 CDO11_06525 PF00326 Prolyl oligopeptidase family CDO11_06540 PF00391 PEP-utilising enzyme, mobile domain CDO11_06540 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_06540 PF05524 PEP-utilising enzyme, N-terminal CDO11_06545 PF00381 PTS HPr component phosphorylation site CDO11_06550 PF03610 PTS system fructose IIA component CDO11_06555 PF03668 CDO11_06555 CDO11_06560 PF02603 HPr Serine kinase N terminus CDO11_06560 PF07475 HPr Serine kinase C-terminal domain CDO11_06565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_06570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDO11_06575 PF00309 CDO11_06575 CDO11_06575 PF04552 Sigma-54, DNA binding domain CDO11_06575 PF04963 Sigma-54 factor, core binding domain CDO11_06580 PF00005 ABC transporter CDO11_06580 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO11_06585 PF03968 OstA-like protein CDO11_06590 PF06835 Lipopolysaccharide-assembly, LptC-related CDO11_06595 PF08282 haloacid dehalogenase-like hydrolase CDO11_06600 PF00571 CBS domain CDO11_06600 PF01380 SIS domain CDO11_06605 PF01722 BolA-like protein CDO11_06610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_06625 PF11306 Protein of unknown function (DUF3108) CDO11_06630 PF11306 Protein of unknown function (DUF3108) CDO11_06635 PF00551 Formyl transferase CDO11_06640 PF09997 CDO11_06640 CDO11_06650 PF00586 AIR synthase related protein, N-terminal domain CDO11_06650 PF02769 AIR synthase related protein, C-terminal domain CDO11_06655 PF09839 CDO11_06655 CDO11_06660 PF01594 CDO11_06660 CDO11_06665 PF00308 Bacterial dnaA protein CDO11_06670 PF00483 Nucleotidyl transferase CDO11_06675 PF01636 Phosphotransferase enzyme family CDO11_06680 PF04226 CDO11_06680 CDO11_06690 PF01546 Peptidase family M20/M25/M40 CDO11_06690 PF07687 Peptidase dimerisation domain CDO11_06695 PF12836 Helix-hairpin-helix motif CDO11_06705 PF05962 HutD CDO11_06720 PF13586 CDO11_06720 CDO11_06730 PF06964 Alpha-L-arabinofuranosidase C-terminus CDO11_06735 PF01263 Aldose 1-epimerase CDO11_06740 PF01578 CDO11_06740 CDO11_06745 PF12760 Transposase zinc-ribbon domain CDO11_06745 PF12762 CDO11_06745 CDO11_06750 PF00448 SRP54-type protein, GTPase domain CDO11_06750 PF02881 SRP54-type protein, helical bundle domain CDO11_06750 PF02978 Signal peptide binding domain CDO11_06765 PF03060 Nitronate monooxygenase CDO11_06770 PF01063 Aminotransferase class IV CDO11_06775 PF00886 Ribosomal protein S16 CDO11_06780 PF01782 RimM N-terminal domain CDO11_06780 PF05239 PRC-barrel domain CDO11_06785 PF01746 tRNA (Guanine-1)-methyltransferase CDO11_06790 PF01245 Ribosomal protein L19 CDO11_06800 PF01554 MatE CDO11_06805 PF01479 S4 domain CDO11_06815 PF01609 Transposase DDE domain CDO11_06830 PF01541 GIY-YIG catalytic domain CDO11_06835 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_06835 PF02861 Clp amino terminal domain CDO11_06835 PF07724 AAA domain (Cdc48 subfamily) CDO11_06835 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_06860 PF00593 TonB dependent receptor CDO11_06860 PF07715 TonB-dependent Receptor Plug Domain CDO11_06885 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDO11_06885 PF12557 Cob(I)alamin adenosyltransferase N terminal CDO11_06895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDO11_06900 PF02277 Phosphoribosyltransferase CDO11_06905 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_06910 PF02654 CDO11_06910 CDO11_06920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO11_06920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_06925 PF04183 IucA / IucC family CDO11_06925 PF06276 Ferric iron reductase FhuF-like transporter CDO11_06935 PF04183 IucA / IucC family CDO11_06935 PF06276 Ferric iron reductase FhuF-like transporter CDO11_06945 PF00593 TonB dependent receptor CDO11_06945 PF07715 TonB-dependent Receptor Plug Domain CDO11_06950 PF03328 HpcH/HpaI aldolase/citrate lyase family CDO11_06960 PF00999 Sodium/hydrogen exchanger family CDO11_06960 PF02254 TrkA-N domain CDO11_06970 PF00593 TonB dependent receptor CDO11_06970 PF07715 TonB-dependent Receptor Plug Domain CDO11_06975 PF00593 TonB dependent receptor CDO11_06975 PF07715 TonB-dependent Receptor Plug Domain CDO11_06980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_06990 PF00593 TonB dependent receptor CDO11_06990 PF07715 TonB-dependent Receptor Plug Domain CDO11_06995 PF00005 ABC transporter CDO11_06995 PF12848 ABC transporter CDO11_06995 PF16326 CDO11_06995 CDO11_07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_07010 PF03466 LysR substrate binding domain CDO11_07020 PF07859 alpha/beta hydrolase fold CDO11_07035 PF00486 Transcriptional regulatory protein, C terminal CDO11_07040 PF12833 Helix-turn-helix domain CDO11_07045 PF00183 Hsp90 protein CDO11_07045 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07065 PF05598 CDO11_07065 CDO11_07070 PF00872 CDO11_07070 CDO11_07075 PF00120 Glutamine synthetase, catalytic domain CDO11_07080 PF04204 Homoserine O-succinyltransferase CDO11_07085 PF01810 CDO11_07085 CDO11_07090 PF07722 Peptidase C26 CDO11_07095 PF00487 CDO11_07095 CDO11_07105 PF01609 Transposase DDE domain CDO11_07105 PF05598 CDO11_07105 CDO11_07110 PF00266 Aminotransferase class-V CDO11_07115 PF13683 CDO11_07115 CDO11_07120 PF12760 Transposase zinc-ribbon domain CDO11_07120 PF12762 CDO11_07120 CDO11_07130 PF13546 CDO11_07130 CDO11_07135 PF01609 Transposase DDE domain CDO11_07140 PF00355 Rieske [2Fe-2S] domain CDO11_07145 PF13673 Acetyltransferase (GNAT) domain CDO11_07155 PF00266 Aminotransferase class-V CDO11_07160 PF01458 Uncharacterized protein family (UPF0051) CDO11_07165 PF00005 ABC transporter CDO11_07170 PF01458 Uncharacterized protein family (UPF0051) CDO11_07175 PF02082 Transcriptional regulator CDO11_07180 PF00856 SET domain CDO11_07195 PF01965 DJ-1/PfpI family CDO11_07200 PF07273 Protein of unknown function (DUF1439) CDO11_07210 PF12977 Domain of Unknown Function with PDB structure (DUF3861) CDO11_07215 PF01551 Peptidase family M23 CDO11_07220 PF00216 Bacterial DNA-binding protein CDO11_07225 PF13546 CDO11_07225 CDO11_07230 PF03807 NADP oxidoreductase coenzyme F420-dependent CDO11_07230 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDO11_07235 PF01168 Alanine racemase, N-terminal domain CDO11_07240 PF00437 Type II/IV secretion system protein CDO11_07245 PF00437 Type II/IV secretion system protein CDO11_07250 PF02588 CDO11_07250 CDO11_07265 PF03352 Methyladenine glycosylase CDO11_07275 PF02622 Uncharacterized ACR, COG1678 CDO11_07280 PF03652 Uncharacterised protein family (UPF0081) CDO11_07285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_07285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_07295 PF02566 OsmC-like protein CDO11_07300 PF05433 CDO11_07300 CDO11_07305 PF02567 Phenazine biosynthesis-like protein CDO11_07315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO11_07315 PF00696 Amino acid kinase family CDO11_07315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO11_07330 PF08245 Mur ligase middle domain CDO11_07340 PF01738 Dienelactone hydrolase family CDO11_07345 PF00348 Polyprenyl synthetase CDO11_07350 PF00436 Single-strand binding protein family CDO11_07355 PF00990 GGDEF domain CDO11_07355 PF02743 Cache domain CDO11_07370 PF12760 Transposase zinc-ribbon domain CDO11_07370 PF12762 CDO11_07370 CDO11_07375 PF13419 Haloacid dehalogenase-like hydrolase CDO11_07385 PF04328 CDO11_07385 CDO11_07390 PF02554 CDO11_07390 CDO11_07390 PF13722 CDO11_07390 CDO11_07395 PF02678 Pirin CDO11_07395 PF05726 Pirin C-terminal cupin domain CDO11_07405 PF05954 Phage late control gene D protein (GPD) CDO11_07405 PF10106 CDO11_07405 CDO11_07405 PF13296 CDO11_07405 CDO11_07410 PF13503 CDO11_07410 CDO11_07415 PF11745 CDO11_07415 CDO11_07420 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) CDO11_07425 PF05954 Phage late control gene D protein (GPD) CDO11_07425 PF10106 CDO11_07425 CDO11_07425 PF13296 CDO11_07425 CDO11_07430 PF13503 CDO11_07430 CDO11_07440 PF11745 CDO11_07440 CDO11_07445 PF11745 CDO11_07445 CDO11_07455 PF10106 CDO11_07455 CDO11_07455 PF13296 CDO11_07455 CDO11_07460 PF13503 CDO11_07460 CDO11_07465 PF11745 CDO11_07465 CDO11_07470 PF11745 CDO11_07470 CDO11_07475 PF11745 CDO11_07475 CDO11_07480 PF11745 CDO11_07480 CDO11_07485 PF11745 CDO11_07485 CDO11_07490 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) CDO11_07500 PF02678 Pirin CDO11_07500 PF05726 Pirin C-terminal cupin domain CDO11_07510 PF04493 Endonuclease V CDO11_07515 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_07530 PF01431 Peptidase family M13 CDO11_07530 PF05649 Peptidase family M13 CDO11_07535 PF13091 PLD-like domain CDO11_07540 PF00072 Response regulator receiver domain CDO11_07540 PF01339 CheB methylesterase CDO11_07545 PF01739 CheR methyltransferase, SAM binding domain CDO11_07545 PF03705 CheR methyltransferase, all-alpha domain CDO11_07550 PF00072 Response regulator receiver domain CDO11_07550 PF00563 EAL domain CDO11_07555 PF01584 CheW-like domain CDO11_07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_07565 PF01584 CheW-like domain CDO11_07565 PF01627 Hpt domain CDO11_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07565 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_07570 PF13466 STAS domain CDO11_07575 PF00270 DEAD/DEAH box helicase CDO11_07575 PF00271 Helicase conserved C-terminal domain CDO11_07575 PF02559 CarD-like/TRCF domain CDO11_07575 PF03461 TRCF domain CDO11_07580 PF13302 Acetyltransferase (GNAT) domain CDO11_07585 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ CDO11_07600 PF00512 His Kinase A (phospho-acceptor) domain CDO11_07600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_07610 PF00112 Papain family cysteine protease CDO11_07615 PF06123 CDO11_07615 CDO11_07620 PF01609 Transposase DDE domain CDO11_07620 PF05598 CDO11_07620 CDO11_07625 PF13358 DDE superfamily endonuclease CDO11_07625 PF13551 Winged helix-turn helix CDO11_07625 PF13592 CDO11_07625 CDO11_07630 PF00112 Papain family cysteine protease CDO11_07635 PF06123 CDO11_07635 CDO11_07640 PF01609 Transposase DDE domain CDO11_07640 PF05598 CDO11_07640 CDO11_07645 PF01609 Transposase DDE domain CDO11_07645 PF05598 CDO11_07645 CDO11_07650 PF00112 Papain family cysteine protease CDO11_07665 PF13936 Helix-turn-helix domain CDO11_07670 PF00795 Carbon-nitrogen hydrolase CDO11_07675 PF12275 CDO11_07675 CDO11_07680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_07685 PF01475 Ferric uptake regulator family CDO11_07695 PF07883 Cupin domain CDO11_07715 PF04306 CDO11_07715 CDO11_07720 PF00313 'Cold-shock' DNA-binding domain CDO11_07725 PF05433 CDO11_07725 CDO11_07730 PF01322 Cytochrome C' CDO11_07735 PF00899 ThiF family CDO11_07740 PF01026 TatD related DNase CDO11_07750 PF05433 CDO11_07750 CDO11_07755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_07755 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_07755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_07765 PF00043 Glutathione S-transferase, C-terminal domain CDO11_07765 PF02798 Glutathione S-transferase, N-terminal domain CDO11_07770 PF00733 Asparagine synthase CDO11_07770 PF13537 Glutamine amidotransferase domain CDO11_07775 PF03358 NADPH-dependent FMN reductase CDO11_07780 PF00772 DnaB-like helicase N terminal domain CDO11_07780 PF03796 DnaB-like helicase C terminal domain CDO11_07785 PF00875 DNA photolyase CDO11_07785 PF03441 FAD binding domain of DNA photolyase CDO11_07800 PF00691 OmpA family CDO11_07800 PF13488 CDO11_07800 CDO11_07805 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_07810 PF00665 Integrase core domain CDO11_07810 PF13936 Helix-turn-helix domain CDO11_07815 PF00593 TonB dependent receptor CDO11_07815 PF07715 TonB-dependent Receptor Plug Domain CDO11_07820 PF00593 TonB dependent receptor CDO11_07820 PF07715 TonB-dependent Receptor Plug Domain CDO11_07830 PF03203 CDO11_07830 CDO11_07835 PF17067 CDO11_07835 CDO11_07840 PF00107 Zinc-binding dehydrogenase CDO11_07840 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_07845 PF00654 Voltage gated chloride channel CDO11_07855 PF01609 Transposase DDE domain CDO11_07855 PF05598 CDO11_07855 CDO11_07860 PF13546 CDO11_07860 CDO11_07865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_07865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_07870 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_07870 PF02805 Metal binding domain of Ada CDO11_07870 PF06029 AlkA N-terminal domain CDO11_07870 PF12833 Helix-turn-helix domain CDO11_07890 PF13211 CDO11_07890 CDO11_07895 PF01124 MAPEG family CDO11_07905 PF13275 S4 domain CDO11_07915 PF08281 Sigma-70, region 4 CDO11_07950 PF03737 Demethylmenaquinone methyltransferase CDO11_07960 PF00999 Sodium/hydrogen exchanger family CDO11_08000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_08000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO11_08005 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_08005 PF02805 Metal binding domain of Ada CDO11_08005 PF06029 AlkA N-terminal domain CDO11_08005 PF12833 Helix-turn-helix domain CDO11_08025 PF13211 CDO11_08025 CDO11_08030 PF01124 MAPEG family CDO11_08040 PF13275 S4 domain CDO11_08050 PF08281 Sigma-70, region 4 CDO11_08055 PF00270 DEAD/DEAH box helicase CDO11_08055 PF00271 Helicase conserved C-terminal domain CDO11_08055 PF03880 DbpA RNA binding domain CDO11_08060 PF00563 EAL domain CDO11_08060 PF00990 GGDEF domain CDO11_08065 PF00849 RNA pseudouridylate synthase CDO11_08065 PF01479 S4 domain CDO11_08090 PF03737 Demethylmenaquinone methyltransferase CDO11_08095 PF00144 Beta-lactamase CDO11_08095 PF11954 CDO11_08095 CDO11_08100 PF00999 Sodium/hydrogen exchanger family CDO11_08105 PF00512 His Kinase A (phospho-acceptor) domain CDO11_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08110 PF00072 Response regulator receiver domain CDO11_08110 PF00486 Transcriptional regulatory protein, C terminal CDO11_08115 PF02321 Outer membrane efflux protein CDO11_08120 PF06629 CDO11_08120 CDO11_08125 PF13437 HlyD family secretion protein CDO11_08125 PF13533 Biotin-lipoyl like CDO11_08130 PF00873 AcrB/AcrD/AcrF family CDO11_08135 PF07929 Plasmid pRiA4b ORF-3-like protein CDO11_08140 PF00005 ABC transporter CDO11_08140 PF00664 ABC transporter transmembrane region CDO11_08145 PF13586 CDO11_08145 CDO11_08150 PF13340 CDO11_08150 CDO11_08155 PF13546 CDO11_08155 CDO11_08165 PF05593 CDO11_08165 CDO11_08165 PF15523 CDO11_08165 CDO11_08170 PF01609 Transposase DDE domain CDO11_08170 PF05598 CDO11_08170 CDO11_08185 PF01609 Transposase DDE domain CDO11_08185 PF05598 CDO11_08185 CDO11_08200 PF13936 Helix-turn-helix domain CDO11_08205 PF15523 CDO11_08205 CDO11_08210 PF13546 CDO11_08210 CDO11_08215 PF01121 Dephospho-CoA kinase CDO11_08220 PF01478 Type IV leader peptidase family CDO11_08220 PF06750 CDO11_08220 CDO11_08225 PF00482 Type II secretion system (T2SS), protein F CDO11_08230 PF00114 Pilin (bacterial filament) CDO11_08230 PF07963 Prokaryotic N-terminal methylation motif CDO11_08235 PF00884 Sulfatase CDO11_08250 PF00437 Type II/IV secretion system protein CDO11_08250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_08255 PF02661 Fic/DOC family CDO11_08265 PF00072 Response regulator receiver domain CDO11_08265 PF00158 Sigma-54 interaction domain CDO11_08265 PF02954 Bacterial regulatory protein, Fis family CDO11_08270 PF00512 His Kinase A (phospho-acceptor) domain CDO11_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08275 PF00549 CoA-ligase CDO11_08275 PF08442 ATP-grasp domain CDO11_08280 PF00549 CoA-ligase CDO11_08280 PF02629 CoA binding domain CDO11_08295 PF00795 Carbon-nitrogen hydrolase CDO11_08295 PF02540 NAD synthase CDO11_08300 PF13525 Outer membrane lipoprotein CDO11_08305 PF00849 RNA pseudouridylate synthase CDO11_08310 PF02578 Multi-copper polyphenol oxidoreductase laccase CDO11_08315 PF13761 CDO11_08315 CDO11_08325 PF00982 Glycosyltransferase family 20 CDO11_08330 PF00723 Glycosyl hydrolases family 15 CDO11_08335 PF02358 Trehalose-phosphatase CDO11_08345 PF00593 TonB dependent receptor CDO11_08345 PF07715 TonB-dependent Receptor Plug Domain CDO11_08350 PF12098 CDO11_08350 CDO11_08355 PF14486 Domain of unknown function (DUF4432) CDO11_08370 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_08375 PF04376 CDO11_08375 CDO11_08375 PF04377 CDO11_08375 CDO11_08380 PF13202 EF hand CDO11_08405 PF13622 Thioesterase-like superfamily CDO11_08410 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_08415 PF04314 Protein of unknown function (DUF461) CDO11_08420 PF13279 Thioesterase-like superfamily CDO11_08430 PF00829 Ribosomal prokaryotic L21 protein CDO11_08435 PF01016 Ribosomal L27 protein CDO11_08440 PF01018 GTP1/OBG CDO11_08440 PF01926 50S ribosome-binding GTPase CDO11_08445 PF01649 Ribosomal protein S20 CDO11_08450 PF03023 CDO11_08450 CDO11_08455 PF01687 Riboflavin kinase CDO11_08455 PF06574 FAD synthetase CDO11_08460 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_08460 PF06827 Zinc finger found in FPG and IleRS CDO11_08460 PF08264 Anticodon-binding domain of tRNA CDO11_08465 PF01252 CDO11_08465 CDO11_08470 PF02401 LytB protein CDO11_08485 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_08490 PF00510 Cytochrome c oxidase subunit III CDO11_08495 PF03626 CDO11_08495 CDO11_08500 PF05299 M61 glycyl aminopeptidase CDO11_08500 PF07720 Tetratricopeptide repeat CDO11_08505 PF05954 Phage late control gene D protein (GPD) CDO11_08515 PF03527 CDO11_08515 CDO11_08515 PF05593 CDO11_08515 CDO11_08515 PF14440 CDO11_08515 CDO11_08520 PF14435 CDO11_08520 CDO11_08530 PF05598 CDO11_08530 CDO11_08545 PF14435 CDO11_08545 CDO11_08570 PF00488 MutS domain V CDO11_08570 PF01624 MutS domain I CDO11_08570 PF05188 MutS domain II CDO11_08570 PF05190 MutS family domain IV CDO11_08570 PF05192 MutS domain III CDO11_08590 PF13481 AAA domain CDO11_08590 PF13541 Subunit ChlI of Mg-chelatase CDO11_08605 PF13231 CDO11_08605 CDO11_08610 PF04185 Phosphoesterase family CDO11_08610 PF05506 CDO11_08610 CDO11_08615 PF04185 Phosphoesterase family CDO11_08620 PF04185 Phosphoesterase family CDO11_08625 PF07690 Major Facilitator Superfamily CDO11_08630 PF09723 CDO11_08630 CDO11_08635 PF11218 CDO11_08635 CDO11_08640 PF00152 tRNA synthetases class II (D, K and N) CDO11_08640 PF01336 OB-fold nucleic acid binding domain CDO11_08640 PF02938 GAD domain CDO11_08645 PF00583 Acetyltransferase (GNAT) family CDO11_08655 PF01709 Transcriptional regulator CDO11_08660 PF02075 Crossover junction endodeoxyribonuclease RuvC CDO11_08665 PF01330 RuvA N terminal domain CDO11_08665 PF07499 RuvA, C-terminal domain CDO11_08665 PF14520 Helix-hairpin-helix domain CDO11_08670 PF02705 CDO11_08670 CDO11_08675 PF05491 Holliday junction DNA helicase ruvB C-terminus CDO11_08675 PF05496 Holliday junction DNA helicase ruvB N-terminus CDO11_08680 PF03061 Thioesterase superfamily CDO11_08685 PF01618 CDO11_08685 CDO11_08690 PF02472 Biopolymer transport protein ExbD/TolR CDO11_08695 PF13103 TonB C terminal CDO11_08700 PF04052 TolB amino-terminal domain CDO11_08700 PF07676 WD40-like Beta Propeller Repeat CDO11_08705 PF00691 OmpA family CDO11_08710 PF13525 Outer membrane lipoprotein CDO11_08710 PF16331 CDO11_08710 CDO11_08715 PF04055 Radical SAM superfamily CDO11_08715 PF13394 4Fe-4S single cluster domain CDO11_08725 PF01479 S4 domain CDO11_08745 PF01810 CDO11_08745 CDO11_08760 PF01610 CDO11_08760 CDO11_08760 PF13542 CDO11_08760 CDO11_08765 PF13586 CDO11_08765 CDO11_08770 PF13340 CDO11_08770 CDO11_08775 PF01609 Transposase DDE domain CDO11_08775 PF05598 CDO11_08775 CDO11_08785 PF06508 Queuosine biosynthesis protein QueC CDO11_08800 PF00072 Response regulator receiver domain CDO11_08810 PF00270 DEAD/DEAH box helicase CDO11_08810 PF00271 Helicase conserved C-terminal domain CDO11_08810 PF00570 HRDC domain CDO11_08810 PF09382 RQC domain CDO11_08810 PF16124 CDO11_08810 CDO11_08820 PF00210 Ferritin-like domain CDO11_08825 PF00270 DEAD/DEAH box helicase CDO11_08825 PF00271 Helicase conserved C-terminal domain CDO11_08825 PF04408 Helicase associated domain (HA2) CDO11_08825 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDO11_08825 PF11898 CDO11_08825 CDO11_08830 PF00593 TonB dependent receptor CDO11_08830 PF07715 TonB-dependent Receptor Plug Domain CDO11_08835 PF02685 Glucokinase CDO11_08840 PF02685 Glucokinase CDO11_08850 PF10142 PhoPQ-activated pathogenicity-related protein CDO11_08855 PF13340 CDO11_08855 CDO11_08860 PF13586 CDO11_08860 CDO11_08870 PF04055 Radical SAM superfamily CDO11_08870 PF13186 Iron-sulfur cluster-binding domain CDO11_08870 PF13353 4Fe-4S single cluster domain CDO11_08875 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDO11_08880 PF03070 TENA/THI-4/PQQC family CDO11_08885 PF12706 Beta-lactamase superfamily domain CDO11_08890 PF08042 CDO11_08890 CDO11_08895 PF02824 TGS domain CDO11_08895 PF04607 Region found in RelA / SpoT proteins CDO11_08895 PF13291 ACT domain CDO11_08895 PF13328 HD domain CDO11_08905 PF00535 Glycosyl transferase family 2 CDO11_08905 PF13692 Glycosyl transferases group 1 CDO11_08910 PF00905 Penicillin binding protein transpeptidase domain CDO11_08910 PF00912 Transglycosylase CDO11_08910 PF14814 Bifunctional transglycosylase second domain CDO11_08920 PF13307 Helicase C-terminal domain CDO11_08925 PF00814 Glycoprotease family CDO11_08930 PF03747 ADP-ribosylglycohydrolase CDO11_08935 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_08940 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDO11_08940 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDO11_08945 PF00072 Response regulator receiver domain CDO11_08950 PF00072 Response regulator receiver domain CDO11_08955 PF01584 CheW-like domain CDO11_08960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_08965 PF00072 Response regulator receiver domain CDO11_08965 PF01584 CheW-like domain CDO11_08965 PF01627 Hpt domain CDO11_08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_08965 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_08970 PF01339 CheB methylesterase CDO11_08975 PF01584 CheW-like domain CDO11_08980 PF13302 Acetyltransferase (GNAT) domain CDO11_08985 PF13358 DDE superfamily endonuclease CDO11_08985 PF13518 Helix-turn-helix domain CDO11_09010 PF01112 Asparaginase CDO11_09015 PF03932 CutC family CDO11_09020 PF00560 Leucine Rich Repeat CDO11_09040 PF01610 CDO11_09040 CDO11_09040 PF13542 CDO11_09040 CDO11_09045 PF11747 CDO11_09045 CDO11_09065 PF01301 Glycosyl hydrolases family 35 CDO11_09075 PF07971 Glycosyl hydrolase family 92 CDO11_09080 PF06824 Protein of unknown function (DUF1237) CDO11_09090 PF13533 Biotin-lipoyl like CDO11_09110 PF13437 HlyD family secretion protein CDO11_09140 PF00005 ABC transporter CDO11_09140 PF00664 ABC transporter transmembrane region CDO11_09140 PF03412 Peptidase C39 family CDO11_09145 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_09145 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_09145 PF07691 PA14 domain CDO11_09145 PF14310 Fibronectin type III-like domain CDO11_09150 PF00703 Glycosyl hydrolases family 2 CDO11_09165 PF00704 Glycosyl hydrolases family 18 CDO11_09170 PF01120 Alpha-L-fucosidase CDO11_09170 PF16757 CDO11_09170 CDO11_09175 PF00593 TonB dependent receptor CDO11_09175 PF07715 TonB-dependent Receptor Plug Domain CDO11_09180 PF02685 Glucokinase CDO11_09185 PF04452 RNA methyltransferase CDO11_09190 PF00202 Aminotransferase class-III CDO11_09195 PF00293 NUDIX domain CDO11_09200 PF00459 Inositol monophosphatase family CDO11_09205 PF03819 MazG nucleotide pyrophosphohydrolase domain CDO11_09220 PF01145 SPFH domain / Band 7 family CDO11_09220 PF16200 CDO11_09220 CDO11_09230 PF01571 Aminomethyltransferase folate-binding domain CDO11_09230 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO11_09235 PF01597 Glycine cleavage H-protein CDO11_09255 PF00144 Beta-lactamase CDO11_09265 PF06993 CDO11_09265 CDO11_09270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_09270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_09270 PF09317 CDO11_09270 CDO11_09275 PF12146 Putative lysophospholipase CDO11_09280 PF00440 Bacterial regulatory proteins, tetR family CDO11_09285 PF00593 TonB dependent receptor CDO11_09285 PF07715 TonB-dependent Receptor Plug Domain CDO11_09295 PF01430 Hsp33 protein CDO11_09300 PF00912 Transglycosylase CDO11_09305 PF00535 Glycosyl transferase family 2 CDO11_09310 PF00571 CBS domain CDO11_09330 PF03006 CDO11_09330 CDO11_09335 PF00009 Elongation factor Tu GTP binding domain CDO11_09335 PF16658 CDO11_09335 CDO11_09340 PF01551 Peptidase family M23 CDO11_09345 PF00561 alpha/beta hydrolase fold CDO11_09350 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_09360 PF03313 CDO11_09360 CDO11_09360 PF03315 Serine dehydratase beta chain CDO11_09365 PF05768 Glutaredoxin-like domain (DUF836) CDO11_09370 PF05901 CDO11_09370 CDO11_09375 PF04264 YceI-like domain CDO11_09380 PF01292 Prokaryotic cytochrome b561 CDO11_09385 PF04264 YceI-like domain CDO11_09390 PF00072 Response regulator receiver domain CDO11_09390 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09390 PF07494 Two component regulator propeller CDO11_09390 PF07495 Y_Y_Y domain CDO11_09395 PF00072 Response regulator receiver domain CDO11_09395 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09395 PF07494 Two component regulator propeller CDO11_09395 PF07495 Y_Y_Y domain CDO11_09400 PF00072 Response regulator receiver domain CDO11_09400 PF00512 His Kinase A (phospho-acceptor) domain CDO11_09400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_09400 PF07494 Two component regulator propeller CDO11_09400 PF07495 Y_Y_Y domain CDO11_09420 PF00754 F5/8 type C domain CDO11_09420 PF01120 Alpha-L-fucosidase CDO11_09430 PF13586 CDO11_09430 CDO11_09435 PF13340 CDO11_09435 CDO11_09440 PF16355 CDO11_09440 CDO11_09445 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CDO11_09445 PF07745 Glycosyl hydrolase family 53 CDO11_09455 PF06114 Domain of unknown function (DUF955) CDO11_09455 PF09856 CDO11_09455 CDO11_09455 PF13560 Helix-turn-helix domain CDO11_09460 PF00171 Aldehyde dehydrogenase family CDO11_09465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_09465 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_09465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_09475 PF16113 CDO11_09475 CDO11_09480 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_09480 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_09485 PF01545 Cation efflux family CDO11_09490 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_09490 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_09490 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_09495 PF04542 Sigma-70 region 2 CDO11_09495 PF08281 Sigma-70, region 4 CDO11_09500 PF03872 Anti sigma-E protein RseA, N-terminal domain CDO11_09505 PF13180 PDZ domain CDO11_09505 PF13365 Trypsin-like peptidase domain CDO11_09510 PF00009 Elongation factor Tu GTP binding domain CDO11_09510 PF00679 Elongation factor G C-terminus CDO11_09510 PF03144 Elongation factor Tu domain 2 CDO11_09510 PF06421 GTP-binding protein LepA C-terminus CDO11_09515 PF00717 Peptidase S24-like CDO11_09520 PF16137 CDO11_09520 CDO11_09525 PF00035 Double-stranded RNA binding motif CDO11_09525 PF14622 Ribonuclease-III-like CDO11_09530 PF01926 50S ribosome-binding GTPase CDO11_09530 PF07650 KH domain CDO11_09535 PF02565 Recombination protein O C terminal CDO11_09535 PF11967 Recombination protein O N terminal CDO11_09540 PF00072 Response regulator receiver domain CDO11_09540 PF01627 Hpt domain CDO11_09545 PF05958 tRNA (Uracil-5-)-methyltransferase CDO11_09550 PF01928 CYTH domain CDO11_09555 PF01928 CYTH domain CDO11_09560 PF01610 CDO11_09560 CDO11_09560 PF13542 CDO11_09560 CDO11_09565 PF01609 Transposase DDE domain CDO11_09565 PF05598 CDO11_09565 CDO11_09570 PF01323 DSBA-like thioredoxin domain CDO11_09575 PF13450 NAD(P)-binding Rossmann-like domain CDO11_09580 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CDO11_09585 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_09590 PF00156 Phosphoribosyl transferase domain CDO11_09595 PF01048 Phosphorylase superfamily CDO11_09600 PF00313 'Cold-shock' DNA-binding domain CDO11_09615 PF00149 Calcineurin-like phosphoesterase CDO11_09620 PF00270 DEAD/DEAH box helicase CDO11_09620 PF00271 Helicase conserved C-terminal domain CDO11_09620 PF08494 CDO11_09620 CDO11_09625 PF01068 ATP dependent DNA ligase domain CDO11_09625 PF04675 DNA ligase N terminus CDO11_09625 PF04679 ATP dependent DNA ligase C terminal region CDO11_09645 PF04519 CDO11_09645 CDO11_09650 PF00990 GGDEF domain CDO11_09650 PF05227 CHASE3 domain CDO11_09665 PF00108 Thiolase, N-terminal domain CDO11_09665 PF02803 Thiolase, C-terminal domain CDO11_09670 PF00082 Subtilase family CDO11_09670 PF03797 Autotransporter beta-domain CDO11_09670 PF12951 CDO11_09670 CDO11_09675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO11_09675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDO11_09685 PF01863 Protein of unknown function DUF45 CDO11_09690 PF07043 CDO11_09690 CDO11_09695 PF10982 Protein of unknown function (DUF2789) CDO11_09700 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_09705 PF00924 Mechanosensitive ion channel CDO11_09715 PF13546 CDO11_09715 CDO11_09735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_09745 PF01545 Cation efflux family CDO11_09750 PF03831 PhnA protein CDO11_09750 PF08274 PhnA Zinc-Ribbon CDO11_09765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_09770 PF07690 Major Facilitator Superfamily CDO11_09795 PF09537 Domain of unknown function (DUF2383) CDO11_09800 PF13563 2'-5' RNA ligase superfamily CDO11_09810 PF09791 CDO11_09810 CDO11_09815 PF06057 Bacterial virulence protein (VirJ) CDO11_09825 PF13586 CDO11_09825 CDO11_09830 PF13340 CDO11_09830 CDO11_09835 PF03706 CDO11_09835 CDO11_09835 PF09924 Uncharacterized conserved protein (DUF2156) CDO11_09845 PF01042 Endoribonuclease L-PSP CDO11_09850 PF02353 Mycolic acid cyclopropane synthetase CDO11_09855 PF06966 CDO11_09855 CDO11_09860 PF11086 CDO11_09860 CDO11_09865 PF02353 Mycolic acid cyclopropane synthetase CDO11_09870 PF07103 CDO11_09870 CDO11_09875 PF01593 Flavin containing amine oxidoreductase CDO11_09880 PF00487 CDO11_09880 CDO11_09885 PF10099 CDO11_09885 CDO11_09890 PF04542 Sigma-70 region 2 CDO11_09890 PF08281 Sigma-70, region 4 CDO11_09910 PF04060 Putative Fe-S cluster CDO11_09910 PF14697 4Fe-4S dicluster domain CDO11_09915 PF12710 haloacid dehalogenase-like hydrolase CDO11_09920 PF01588 Putative tRNA binding domain CDO11_09920 PF09334 tRNA synthetases class I (M) CDO11_09925 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) CDO11_09940 PF00324 Amino acid permease CDO11_09945 PF02574 Homocysteine S-methyltransferase CDO11_09950 PF05960 Bacterial protein of unknown function (DUF885) CDO11_09960 PF02592 CDO11_09960 CDO11_09965 PF04367 CDO11_09965 CDO11_09975 PF01609 Transposase DDE domain CDO11_09975 PF05598 CDO11_09975 CDO11_09980 PF08845 CDO11_09980 CDO11_09985 PF05598 CDO11_09985 CDO11_09990 PF01583 Adenylylsulphate kinase CDO11_09995 PF01583 Adenylylsulphate kinase CDO11_10010 PF05598 CDO11_10010 CDO11_10025 PF06850 CDO11_10025 CDO11_10035 PF03653 CDO11_10035 CDO11_10050 PF12040 CDO11_10050 CDO11_10050 PF12679 CDO11_10050 CDO11_10055 PF12040 CDO11_10055 CDO11_10065 PF00593 TonB dependent receptor CDO11_10065 PF07715 TonB-dependent Receptor Plug Domain CDO11_10080 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDO11_10085 PF01336 OB-fold nucleic acid binding domain CDO11_10085 PF02811 PHP domain CDO11_10085 PF07733 Bacterial DNA polymerase III alpha subunit CDO11_10085 PF14579 Helix-hairpin-helix motif CDO11_10090 PF01351 Ribonuclease HII CDO11_10095 PF02684 CDO11_10095 CDO11_10100 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDO11_10105 PF07977 FabA-like domain CDO11_10110 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10110 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDO11_10120 PF01103 Surface antigen CDO11_10120 PF07244 Surface antigen variable number repeat CDO11_10125 PF02163 Peptidase family M50 CDO11_10130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDO11_10130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CDO11_10130 PF13288 DXP reductoisomerase C-terminal domain CDO11_10135 PF01148 Cytidylyltransferase family CDO11_10140 PF01255 Putative undecaprenyl diphosphate synthase CDO11_10145 PF01765 Ribosome recycling factor CDO11_10150 PF00696 Amino acid kinase family CDO11_10155 PF08668 HDOD domain CDO11_10160 PF00889 Elongation factor TS CDO11_10165 PF00318 Ribosomal protein S2 CDO11_10170 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CDO11_10180 PF05229 CDO11_10180 CDO11_10185 PF00577 Outer membrane usher protein CDO11_10185 PF13953 PapC C-terminal domain CDO11_10190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CDO11_10195 PF05229 CDO11_10195 CDO11_10200 PF00557 Metallopeptidase family M24 CDO11_10205 PF01909 Nucleotidyltransferase domain CDO11_10205 PF01966 HD domain CDO11_10205 PF08335 GlnD PII-uridylyltransferase CDO11_10210 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_10210 PF14602 Hexapeptide repeat of succinyl-transferase CDO11_10210 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDO11_10220 PF03960 ArsC family CDO11_10225 PF13508 Acetyltransferase (GNAT) domain CDO11_10230 PF01546 Peptidase family M20/M25/M40 CDO11_10230 PF07687 Peptidase dimerisation domain CDO11_10235 PF00733 Asparagine synthase CDO11_10235 PF13537 Glutamine amidotransferase domain CDO11_10240 PF13229 Right handed beta helix region CDO11_10250 PF00593 TonB dependent receptor CDO11_10250 PF07715 TonB-dependent Receptor Plug Domain CDO11_10255 PF01804 Penicillin amidase CDO11_10260 PF00210 Ferritin-like domain CDO11_10265 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_10265 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_10275 PF01047 MarR family CDO11_10280 PF02321 Outer membrane efflux protein CDO11_10285 PF00529 HlyD family secretion protein CDO11_10285 PF16576 CDO11_10285 CDO11_10290 PF07690 Major Facilitator Superfamily CDO11_10295 PF00144 Beta-lactamase CDO11_10330 PF04101 Glycosyltransferase family 28 C-terminal domain CDO11_10335 PF02779 Transketolase, pyrimidine binding domain CDO11_10335 PF02780 Transketolase, C-terminal domain CDO11_10335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDO11_10340 PF14279 CDO11_10340 CDO11_10345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_10345 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_10345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_10345 PF12418 CDO11_10345 CDO11_10345 PF12806 CDO11_10345 CDO11_10350 PF03168 Late embryogenesis abundant protein CDO11_10360 PF01668 SmpB protein CDO11_10365 PF03364 Polyketide cyclase / dehydrase and lipid transport CDO11_10370 PF03658 RnfH family Ubiquitin CDO11_10380 PF04355 SmpA / OmlA family CDO11_10385 PF01475 Ferric uptake regulator family CDO11_10390 PF02463 RecF/RecN/SMC N terminal domain CDO11_10395 PF01628 HrcA protein C terminal domain CDO11_10395 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CDO11_10400 PF01025 GrpE CDO11_10405 PF00012 Hsp70 protein CDO11_10410 PF00226 DnaJ domain CDO11_10410 PF00684 DnaJ central domain CDO11_10410 PF01556 DnaJ C terminal domain CDO11_10420 PF08543 Phosphomethylpyrimidine kinase CDO11_10425 PF01842 ACT domain CDO11_10425 PF02153 Prephenate dehydrogenase CDO11_10430 PF13546 CDO11_10430 CDO11_10435 PF02321 Outer membrane efflux protein CDO11_10440 PF03466 LysR substrate binding domain CDO11_10450 PF00005 ABC transporter CDO11_10450 PF00664 ABC transporter transmembrane region CDO11_10455 PF01205 Uncharacterized protein family UPF0029 CDO11_10455 PF09186 Domain of unknown function (DUF1949) CDO11_10460 PF03641 Possible lysine decarboxylase CDO11_10465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_10465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_10470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO11_10470 PF00364 Biotin-requiring enzyme CDO11_10470 PF02817 e3 binding domain CDO11_10475 PF00676 Dehydrogenase E1 component CDO11_10475 PF02779 Transketolase, pyrimidine binding domain CDO11_10475 PF16078 CDO11_10475 CDO11_10475 PF16870 CDO11_10475 CDO11_10480 PF13673 Acetyltransferase (GNAT) domain CDO11_10485 PF08007 Cupin superfamily protein CDO11_10490 PF13180 PDZ domain CDO11_10500 PF11259 CDO11_10500 CDO11_10505 PF00206 Lyase CDO11_10505 PF08328 Adenylosuccinate lyase C-terminal CDO11_10525 PF13340 CDO11_10525 CDO11_10530 PF13586 CDO11_10530 CDO11_10545 PF00206 Lyase CDO11_10545 PF10415 Fumarase C C-terminus CDO11_10565 PF13349 CDO11_10565 CDO11_10575 PF00005 ABC transporter CDO11_10580 PF00392 Bacterial regulatory proteins, gntR family CDO11_10590 PF00255 Glutathione peroxidase CDO11_10595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_10595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_10600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_10600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_10600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_10605 PF04102 SlyX CDO11_10610 PF09831 CDO11_10610 CDO11_10615 PF13557 CDO11_10615 CDO11_10620 PF00356 Bacterial regulatory proteins, lacI family CDO11_10620 PF13377 Periplasmic binding protein-like domain CDO11_10625 PF07690 Major Facilitator Superfamily CDO11_10630 PF00294 pfkB family carbohydrate kinase CDO11_10635 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) CDO11_10640 PF00809 Pterin binding enzyme CDO11_10640 PF02310 B12 binding domain CDO11_10640 PF02607 B12 binding domain CDO11_10640 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO11_10645 PF02574 Homocysteine S-methyltransferase CDO11_10650 PF01022 Bacterial regulatory protein, arsR family CDO11_10650 PF08241 Methyltransferase domain CDO11_10655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_10655 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_10655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_10675 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_10685 PF00575 S1 RNA binding domain CDO11_10685 PF00773 RNB domain CDO11_10685 PF08206 Ribonuclease B OB domain CDO11_10700 PF04828 Glutathione-dependent formaldehyde-activating enzyme CDO11_10705 PF00588 SpoU rRNA Methylase family CDO11_10705 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_10710 PF13340 CDO11_10710 CDO11_10715 PF13586 CDO11_10715 CDO11_10725 PF01609 Transposase DDE domain CDO11_10725 PF05598 CDO11_10725 CDO11_10735 PF12760 Transposase zinc-ribbon domain CDO11_10735 PF12762 CDO11_10735 CDO11_10740 PF13546 CDO11_10740 CDO11_10745 PF00872 CDO11_10745 CDO11_10750 PF05598 CDO11_10750 CDO11_10755 PF00313 'Cold-shock' DNA-binding domain CDO11_10760 PF00561 alpha/beta hydrolase fold CDO11_10770 PF01609 Transposase DDE domain CDO11_10770 PF05598 CDO11_10770 CDO11_10775 PF13546 CDO11_10775 CDO11_10780 PF01609 Transposase DDE domain CDO11_10780 PF05598 CDO11_10780 CDO11_10785 PF13546 CDO11_10785 CDO11_10795 PF12760 Transposase zinc-ribbon domain CDO11_10795 PF12762 CDO11_10795 CDO11_10815 PF12760 Transposase zinc-ribbon domain CDO11_10815 PF12762 CDO11_10815 CDO11_10825 PF13546 CDO11_10825 CDO11_10830 PF01609 Transposase DDE domain CDO11_10830 PF05598 CDO11_10830 CDO11_10840 PF05598 CDO11_10840 CDO11_10850 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_10855 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_10860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_10860 PF02403 Seryl-tRNA synthetase N-terminal domain CDO11_10875 PF13546 CDO11_10875 CDO11_10880 PF01609 Transposase DDE domain CDO11_10880 PF05598 CDO11_10880 CDO11_10885 PF02525 Flavodoxin-like fold CDO11_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_10890 PF03466 LysR substrate binding domain CDO11_10940 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_10945 PF13546 CDO11_10945 CDO11_10955 PF01650 Peptidase C13 family CDO11_10970 PF03079 ARD/ARD' family CDO11_10975 PF00596 Class II Aldolase and Adducin N-terminal domain CDO11_10980 PF13520 Amino acid permease CDO11_10985 PF13520 Amino acid permease CDO11_10990 PF00293 NUDIX domain CDO11_10995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_10995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_11000 PF01565 FAD binding domain CDO11_11000 PF02913 FAD linked oxidases, C-terminal domain CDO11_11005 PF09498 CDO11_11005 CDO11_11010 PF13387 CDO11_11010 CDO11_11015 PF13683 CDO11_11015 CDO11_11020 PF13432 Tetratricopeptide repeat CDO11_11025 PF03918 Cytochrome C biogenesis protein CDO11_11030 PF08534 Redoxin CDO11_11035 PF01578 CDO11_11035 CDO11_11035 PF16327 CDO11_11035 CDO11_11040 PF03100 CcmE CDO11_11045 PF04995 CDO11_11045 CDO11_11050 PF01578 CDO11_11050 CDO11_11055 PF03379 CDO11_11055 CDO11_11060 PF00005 ABC transporter CDO11_11065 PF00155 Aminotransferase class I and II CDO11_11070 PF00795 Carbon-nitrogen hydrolase CDO11_11075 PF12760 Transposase zinc-ribbon domain CDO11_11075 PF12762 CDO11_11075 CDO11_11080 PF05096 Glutamine cyclotransferase CDO11_11090 PF00849 RNA pseudouridylate synthase CDO11_11090 PF01479 S4 domain CDO11_11095 PF04079 Putative transcriptional regulators (Ypuh-like) CDO11_11100 PF02616 ScpA/B protein CDO11_11105 PF03795 YCII-related domain CDO11_11110 PF01722 BolA-like protein CDO11_11115 PF00356 Bacterial regulatory proteins, lacI family CDO11_11115 PF13377 Periplasmic binding protein-like domain CDO11_11120 PF00593 TonB dependent receptor CDO11_11120 PF07715 TonB-dependent Receptor Plug Domain CDO11_11125 PF10091 Putative glucoamylase CDO11_11130 PF13416 Bacterial extracellular solute-binding protein CDO11_11135 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_11140 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_11145 PF00754 F5/8 type C domain CDO11_11145 PF06202 Amylo-alpha-1,6-glucosidase CDO11_11155 PF01963 CDO11_11155 CDO11_11155 PF13420 Acetyltransferase (GNAT) domain CDO11_11160 PF00795 Carbon-nitrogen hydrolase CDO11_11170 PF04371 Porphyromonas-type peptidyl-arginine deiminase CDO11_11180 PF00444 Ribosomal protein L36 CDO11_11185 PF02224 Cytidylate kinase CDO11_11190 PF00575 S1 RNA binding domain CDO11_11195 PF00216 Bacterial DNA-binding protein CDO11_11200 PF06305 CDO11_11200 CDO11_11205 PF13432 Tetratricopeptide repeat CDO11_11210 PF00953 Glycosyl transferase family 4 CDO11_11215 PF02719 Polysaccharide biosynthesis protein CDO11_11215 PF13727 CoA-binding domain CDO11_11220 PF00483 Nucleotidyl transferase CDO11_11235 PF06844 Protein of unknown function (DUF1244) CDO11_11240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDO11_11240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDO11_11245 PF00478 IMP dehydrogenase / GMP reductase domain CDO11_11245 PF00571 CBS domain CDO11_11250 PF00117 Glutamine amidotransferase class-I CDO11_11250 PF00958 GMP synthase C terminal domain CDO11_11250 PF02540 NAD synthase CDO11_11255 PF10070 CDO11_11255 CDO11_11260 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_11260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_11265 PF03466 LysR substrate binding domain CDO11_11280 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_11290 PF03601 CDO11_11290 CDO11_11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_11295 PF03466 LysR substrate binding domain CDO11_11310 PF00072 Response regulator receiver domain CDO11_11310 PF17201 CDO11_11310 CDO11_11320 PF01566 CDO11_11320 CDO11_11325 PF01325 Iron dependent repressor, N-terminal DNA binding domain CDO11_11325 PF02742 Iron dependent repressor, metal binding and dimerisation domain CDO11_11330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_11335 PF00929 Exonuclease CDO11_11340 PF00924 Mechanosensitive ion channel CDO11_11345 PF00391 PEP-utilising enzyme, mobile domain CDO11_11345 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDO11_11345 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_11350 PF03618 CDO11_11350 CDO11_11355 PF06853 CDO11_11355 CDO11_11360 PF00293 NUDIX domain CDO11_11375 PF13546 CDO11_11375 CDO11_11380 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_11385 PF01066 CDP-alcohol phosphatidyltransferase CDO11_11390 PF09712 CDO11_11390 CDO11_11395 PF00561 alpha/beta hydrolase fold CDO11_11400 PF04024 CDO11_11400 CDO11_11410 PF01266 FAD dependent oxidoreductase CDO11_11420 PF00575 S1 RNA binding domain CDO11_11420 PF09371 Tex-like protein N-terminal domain CDO11_11420 PF12836 Helix-hairpin-helix motif CDO11_11420 PF16921 CDO11_11420 CDO11_11435 PF00072 Response regulator receiver domain CDO11_11435 PF02954 Bacterial regulatory protein, Fis family CDO11_11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_11445 PF04551 GcpE protein CDO11_11450 PF01569 PAP2 superfamily CDO11_11460 PF07690 Major Facilitator Superfamily CDO11_11465 PF00665 Integrase core domain CDO11_11465 PF13936 Helix-turn-helix domain CDO11_11485 PF00892 EamA-like transporter family CDO11_11490 PF01565 FAD binding domain CDO11_11490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDO11_11495 PF01180 Dihydroorotate dehydrogenase CDO11_11500 PF08241 Methyltransferase domain CDO11_11505 PF13828 CDO11_11505 CDO11_11510 PF00171 Aldehyde dehydrogenase family CDO11_11520 PF03073 TspO/MBR family CDO11_11525 PF00696 Amino acid kinase family CDO11_11525 PF00742 Homoserine dehydrogenase CDO11_11525 PF03447 Homoserine dehydrogenase, NAD binding domain CDO11_11525 PF13840 ACT domain CDO11_11530 PF00288 GHMP kinases N terminal domain CDO11_11530 PF08544 GHMP kinases C terminal CDO11_11540 PF07110 EthD domain CDO11_11545 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_11545 PF14821 Threonine synthase N terminus CDO11_11550 PF13645 CDO11_11550 CDO11_11560 PF03129 Anticodon binding domain CDO11_11560 PF13393 Histidyl-tRNA synthetase CDO11_11575 PF01371 Trp repressor protein CDO11_11580 PF01634 ATP phosphoribosyltransferase CDO11_11580 PF08029 HisG, C-terminal domain CDO11_11585 PF00815 Histidinol dehydrogenase CDO11_11590 PF00155 Aminotransferase class I and II CDO11_11595 PF00475 Imidazoleglycerol-phosphate dehydratase CDO11_11595 PF13242 HAD-hyrolase-like CDO11_11600 PF00117 Glutamine amidotransferase class-I CDO11_11605 PF00977 Histidine biosynthesis protein CDO11_11610 PF00977 Histidine biosynthesis protein CDO11_11615 PF01502 Phosphoribosyl-AMP cyclohydrolase CDO11_11615 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDO11_11620 PF16371 CDO11_11620 CDO11_11625 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_11655 PF02810 SEC-C motif CDO11_11675 PF02486 CDO11_11675 CDO11_11680 PF02303 Helix-destabilising protein CDO11_11695 PF10734 CDO11_11695 CDO11_11700 PF05707 Zonular occludens toxin (Zot) CDO11_11705 PF05857 CDO11_11705 CDO11_11720 PF12375 CDO11_11720 CDO11_11730 PF05857 CDO11_11730 CDO11_11735 PF05707 Zonular occludens toxin (Zot) CDO11_11740 PF10734 CDO11_11740 CDO11_11750 PF10389 Bacteriophage coat protein B CDO11_11760 PF02303 Helix-destabilising protein CDO11_11795 PF13340 CDO11_11795 CDO11_11800 PF13586 CDO11_11800 CDO11_11805 PF01609 Transposase DDE domain CDO11_11805 PF05598 CDO11_11805 CDO11_11825 PF13340 CDO11_11825 CDO11_11830 PF13586 CDO11_11830 CDO11_11860 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_11865 PF13340 CDO11_11865 CDO11_11870 PF13586 CDO11_11870 CDO11_11890 PF01527 Transposase CDO11_11895 PF00665 Integrase core domain CDO11_11895 PF13276 CDO11_11895 CDO11_11905 PF13936 Helix-turn-helix domain CDO11_11915 PF12760 Transposase zinc-ribbon domain CDO11_11915 PF12762 CDO11_11915 CDO11_11925 PF12760 Transposase zinc-ribbon domain CDO11_11925 PF12762 CDO11_11925 CDO11_11930 PF05593 CDO11_11930 CDO11_11935 PF00872 CDO11_11935 CDO11_11940 PF00665 Integrase core domain CDO11_11945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_11965 PF01066 CDP-alcohol phosphatidyltransferase CDO11_11970 PF01541 GIY-YIG catalytic domain CDO11_11970 PF02151 UvrB/uvrC motif CDO11_11970 PF08459 UvrC Helix-hairpin-helix N-terminal CDO11_11975 PF01436 NHL repeat CDO11_11980 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDO11_11985 PF02348 Cytidylyltransferase CDO11_11990 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDO11_11995 PF00005 ABC transporter CDO11_11995 PF00664 ABC transporter transmembrane region CDO11_12000 PF02472 Biopolymer transport protein ExbD/TolR CDO11_12005 PF01618 CDO11_12005 CDO11_12010 PF00753 Metallo-beta-lactamase superfamily CDO11_12010 PF03772 CDO11_12010 CDO11_12010 PF13567 CDO11_12010 CDO11_12015 PF12760 Transposase zinc-ribbon domain CDO11_12015 PF12762 CDO11_12015 CDO11_12030 PF00005 ABC transporter CDO11_12035 PF02687 CDO11_12035 CDO11_12035 PF12704 MacB-like periplasmic core domain CDO11_12045 PF03937 Flavinator of succinate dehydrogenase CDO11_12050 PF13085 2Fe-2S iron-sulfur cluster binding domain CDO11_12050 PF13534 4Fe-4S dicluster domain CDO11_12060 PF00890 FAD binding domain CDO11_12060 PF02910 Fumarate reductase flavoprotein C-term CDO11_12065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_12070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO11_12075 PF07896 Protein of unknown function (DUF1674) CDO11_12080 PF01571 Aminomethyltransferase folate-binding domain CDO11_12080 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO11_12090 PF00005 ABC transporter CDO11_12090 PF08402 TOBE domain CDO11_12095 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO11_12095 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO11_12105 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CDO11_12110 PF00920 Dehydratase family CDO11_12115 PF01081 KDPG and KHG aldolase CDO11_12120 PF01609 Transposase DDE domain CDO11_12120 PF05598 CDO11_12120 CDO11_12125 PF13586 CDO11_12125 CDO11_12130 PF13340 CDO11_12130 CDO11_12150 PF00072 Response regulator receiver domain CDO11_12155 PF00072 Response regulator receiver domain CDO11_12155 PF00512 His Kinase A (phospho-acceptor) domain CDO11_12155 PF01590 GAF domain CDO11_12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_12155 PF08447 PAS fold CDO11_12155 PF08448 PAS fold CDO11_12155 PF13185 GAF domain CDO11_12170 PF13340 CDO11_12170 CDO11_12175 PF13586 CDO11_12175 CDO11_12190 PF00990 GGDEF domain CDO11_12210 PF02253 Phospholipase A1 CDO11_12220 PF13410 Glutathione S-transferase, C-terminal domain CDO11_12230 PF05681 CDO11_12230 CDO11_12230 PF05683 Fumarase C-terminus CDO11_12235 PF00005 ABC transporter CDO11_12240 PF00175 Oxidoreductase NAD-binding domain CDO11_12240 PF00970 Oxidoreductase FAD-binding domain CDO11_12245 PF00255 Glutathione peroxidase CDO11_12255 PF08279 HTH domain CDO11_12270 PF04542 Sigma-70 region 2 CDO11_12270 PF08281 Sigma-70, region 4 CDO11_12280 PF01047 MarR family CDO11_12290 PF14542 GCN5-related N-acetyl-transferase CDO11_12300 PF01694 Rhomboid family CDO11_12310 PF00246 Zinc carboxypeptidase CDO11_12315 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_12315 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_12315 PF14310 Fibronectin type III-like domain CDO11_12330 PF00563 EAL domain CDO11_12330 PF00990 GGDEF domain CDO11_12330 PF01590 GAF domain CDO11_12340 PF00474 Sodium:solute symporter family CDO11_12350 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_12350 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_12355 PF05787 Bacterial protein of unknown function (DUF839) CDO11_12370 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CDO11_12375 PF00342 Phosphoglucose isomerase CDO11_12380 PF02261 Aspartate decarboxylase CDO11_12385 PF02569 Pantoate-beta-alanine ligase CDO11_12390 PF02548 Ketopantoate hydroxymethyltransferase CDO11_12395 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_12400 PF01743 Poly A polymerase head domain CDO11_12400 PF12626 Polymerase A arginine-rich C-terminus CDO11_12400 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_12410 PF02649 Type I GTP cyclohydrolase folE2 CDO11_12415 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_12415 PF11741 AMIN domain CDO11_12430 PF01609 Transposase DDE domain CDO11_12430 PF05598 CDO11_12430 CDO11_12435 PF00082 Subtilase family CDO11_12435 PF03797 Autotransporter beta-domain CDO11_12435 PF12951 CDO11_12435 CDO11_12445 PF16576 CDO11_12445 CDO11_12450 PF00873 AcrB/AcrD/AcrF family CDO11_12455 PF02321 Outer membrane efflux protein CDO11_12460 PF00512 His Kinase A (phospho-acceptor) domain CDO11_12460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_12465 PF00072 Response regulator receiver domain CDO11_12465 PF00196 Bacterial regulatory proteins, luxR family CDO11_12470 PF12951 CDO11_12470 CDO11_12480 PF13018 CDO11_12480 CDO11_12500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO11_12505 PF00800 Prephenate dehydratase CDO11_12505 PF01817 Chorismate mutase type II CDO11_12505 PF01842 ACT domain CDO11_12510 PF00266 Aminotransferase class-V CDO11_12515 PF00174 Oxidoreductase molybdopterin binding domain CDO11_12525 PF01794 CDO11_12525 CDO11_12530 PF16697 CDO11_12530 CDO11_12535 PF09650 CDO11_12535 CDO11_12540 PF05597 CDO11_12540 CDO11_12545 PF04471 Restriction endonuclease CDO11_12550 PF00392 Bacterial regulatory proteins, gntR family CDO11_12550 PF07702 UTRA domain CDO11_12555 PF01979 Amidohydrolase family CDO11_12560 PF07969 Amidohydrolase family CDO11_12565 PF00221 Aromatic amino acid lyase CDO11_12570 PF05013 N-formylglutamate amidohydrolase CDO11_12575 PF01175 Urocanase CDO11_12575 PF17391 CDO11_12575 CDO11_12575 PF17392 CDO11_12575 CDO11_12580 PF01757 CDO11_12580 CDO11_12595 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO11_12595 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO11_12600 PF01008 Initiation factor 2 subunit family CDO11_12610 PF11218 CDO11_12610 CDO11_12615 PF00152 tRNA synthetases class II (D, K and N) CDO11_12620 PF00533 BRCA1 C Terminus (BRCT) domain CDO11_12620 PF01653 NAD-dependent DNA ligase adenylation domain CDO11_12620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDO11_12620 PF03120 NAD-dependent DNA ligase OB-fold domain CDO11_12620 PF12826 Helix-hairpin-helix motif CDO11_12630 PF04354 ZipA, C-terminal FtsZ-binding domain CDO11_12635 PF02463 RecF/RecN/SMC N terminal domain CDO11_12640 PF01281 Ribosomal protein L9, N-terminal domain CDO11_12640 PF03948 Ribosomal protein L9, C-terminal domain CDO11_12645 PF01084 Ribosomal protein S18 CDO11_12650 PF01250 Ribosomal protein S6 CDO11_12655 PF01521 Iron-sulphur cluster biosynthesis CDO11_12660 PF00152 tRNA synthetases class II (D, K and N) CDO11_12660 PF01336 OB-fold nucleic acid binding domain CDO11_12685 PF00484 Carbonic anhydrase CDO11_12690 PF06052 3-hydroxyanthranilic acid dioxygenase CDO11_12700 PF00266 Aminotransferase class-V CDO11_12705 PF01494 FAD binding domain CDO11_12710 PF00929 Exonuclease CDO11_12710 PF08411 Exonuclease C-terminal CDO11_12715 PF09365 CDO11_12715 CDO11_12720 PF00248 Aldo/keto reductase family CDO11_12725 PF11159 CDO11_12725 CDO11_12730 PF06189 CDO11_12730 CDO11_12735 PF01513 ATP-NAD kinase CDO11_12745 PF01170 Putative RNA methylase family UPF0020 CDO11_12745 PF02926 THUMP domain CDO11_12745 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_12760 PF00583 Acetyltransferase (GNAT) family CDO11_12765 PF05728 Uncharacterised protein family (UPF0227) CDO11_12770 PF03473 MOSC domain CDO11_12775 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_12780 PF07920 Protein of unknown function (DUF1684) CDO11_12785 PF00581 Rhodanese-like domain CDO11_12790 PF00293 NUDIX domain CDO11_12790 PF06945 CDO11_12790 CDO11_12795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_12795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDO11_12800 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_12810 PF00633 Helix-hairpin-helix motif CDO11_12810 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_12820 PF00484 Carbonic anhydrase CDO11_12825 PF01609 Transposase DDE domain CDO11_12825 PF05598 CDO11_12825 CDO11_12830 PF13586 CDO11_12830 CDO11_12835 PF01610 CDO11_12835 CDO11_12835 PF13542 CDO11_12835 CDO11_12840 PF13340 CDO11_12840 CDO11_12850 PF07396 Phosphate-selective porin O and P CDO11_12855 PF12849 PBP superfamily domain CDO11_12860 PF12849 PBP superfamily domain CDO11_12865 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_12870 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_12875 PF00005 ABC transporter CDO11_12880 PF01895 PhoU domain CDO11_12885 PF11776 Domain of unknown function (DUF3315) CDO11_12890 PF00929 Exonuclease CDO11_12895 PF13546 CDO11_12895 CDO11_12900 PF01609 Transposase DDE domain CDO11_12900 PF05598 CDO11_12900 CDO11_12905 PF00872 CDO11_12905 CDO11_12910 PF13546 CDO11_12910 CDO11_12925 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_12930 PF02355 Protein export membrane protein CDO11_12930 PF07549 SecD/SecF GG Motif CDO11_12935 PF02355 Protein export membrane protein CDO11_12935 PF07549 SecD/SecF GG Motif CDO11_12935 PF13721 SecD export protein N-terminal TM region CDO11_12940 PF02699 Preprotein translocase subunit CDO11_12945 PF01702 Queuine tRNA-ribosyltransferase CDO11_12950 PF02547 Queuosine biosynthesis protein CDO11_12955 PF01037 AsnC family CDO11_12955 PF13412 Winged helix-turn-helix DNA-binding CDO11_12960 PF00202 Aminotransferase class-III CDO11_12970 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CDO11_12995 PF02333 Phytase CDO11_13000 PF00593 TonB dependent receptor CDO11_13005 PF07715 TonB-dependent Receptor Plug Domain CDO11_13010 PF14681 Uracil phosphoribosyltransferase CDO11_13020 PF13340 CDO11_13020 CDO11_13025 PF13586 CDO11_13025 CDO11_13030 PF13358 DDE superfamily endonuclease CDO11_13030 PF13551 Winged helix-turn helix CDO11_13030 PF13592 CDO11_13030 CDO11_13035 PF01019 Gamma-glutamyltranspeptidase CDO11_13040 PF00037 4Fe-4S binding domain CDO11_13055 PF01467 Cytidylyltransferase CDO11_13060 PF03602 Conserved hypothetical protein 95 CDO11_13065 PF00183 Hsp90 protein CDO11_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13075 PF13546 CDO11_13075 CDO11_13080 PF00581 Rhodanese-like domain CDO11_13080 PF00899 ThiF family CDO11_13085 PF13586 CDO11_13085 CDO11_13090 PF12760 Transposase zinc-ribbon domain CDO11_13090 PF12762 CDO11_13090 CDO11_13100 PF01609 Transposase DDE domain CDO11_13115 PF01609 Transposase DDE domain CDO11_13115 PF05598 CDO11_13115 CDO11_13120 PF13936 Helix-turn-helix domain CDO11_13125 PF13340 CDO11_13125 CDO11_13145 PF00994 Probable molybdopterin binding domain CDO11_13145 PF03453 MoeA N-terminal region (domain I and II) CDO11_13145 PF03454 MoeA C-terminal region (domain IV) CDO11_13150 PF01926 50S ribosome-binding GTPase CDO11_13150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDO11_13155 PF13360 PQQ-like domain CDO11_13160 PF09976 Tetratricopeptide repeat CDO11_13165 PF13413 Helix-turn-helix domain CDO11_13165 PF13464 CDO11_13165 CDO11_13170 PF13432 Tetratricopeptide repeat CDO11_13175 PF04055 Radical SAM superfamily CDO11_13180 PF00334 Nucleoside diphosphate kinase CDO11_13185 PF00440 Bacterial regulatory proteins, tetR family CDO11_13190 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_13190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO11_13190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO11_13195 PF00108 Thiolase, N-terminal domain CDO11_13195 PF02803 Thiolase, C-terminal domain CDO11_13200 PF00654 Voltage gated chloride channel CDO11_13210 PF02537 CDO11_13210 CDO11_13215 PF02641 Uncharacterized ACR, COG1993 CDO11_13220 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_13220 PF12002 MgsA AAA+ ATPase C terminal CDO11_13220 PF16193 CDO11_13220 CDO11_13235 PF03548 Outer membrane lipoprotein carrier protein LolA CDO11_13240 PF01841 Transglutaminase-like superfamily CDO11_13240 PF12969 Domain of Unknown Function with PDB structure (DUF3857) CDO11_13245 PF01580 FtsK/SpoIIIE family CDO11_13245 PF09397 Ftsk gamma domain CDO11_13245 PF13491 CDO11_13245 CDO11_13250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_13255 PF04339 CDO11_13255 CDO11_13270 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDO11_13275 PF01176 Translation initiation factor 1A / IF-1 CDO11_13280 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_13280 PF02861 Clp amino terminal domain CDO11_13280 PF07724 AAA domain (Cdc48 subfamily) CDO11_13280 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_13285 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDO11_13290 PF00293 NUDIX domain CDO11_13295 PF03054 tRNA methyl transferase CDO11_13300 PF04356 Protein of unknown function (DUF489) CDO11_13305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_13320 PF00563 EAL domain CDO11_13320 PF00990 GGDEF domain CDO11_13320 PF08447 PAS fold CDO11_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13325 PF07730 Histidine kinase CDO11_13325 PF08448 PAS fold CDO11_13325 PF13426 PAS domain CDO11_13330 PF00072 Response regulator receiver domain CDO11_13330 PF00563 EAL domain CDO11_13330 PF00990 GGDEF domain CDO11_13335 PF00512 His Kinase A (phospho-acceptor) domain CDO11_13335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13345 PF04316 Anti-sigma-28 factor, FlgM CDO11_13350 PF13144 SAF-like CDO11_13355 PF00072 Response regulator receiver domain CDO11_13355 PF01584 CheW-like domain CDO11_13360 PF00460 Flagella basal body rod protein CDO11_13365 PF00460 Flagella basal body rod protein CDO11_13365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13370 PF03963 CDO11_13370 CDO11_13370 PF13860 FlgD Ig-like domain CDO11_13370 PF13861 FlgD Tudor-like domain CDO11_13375 PF00460 Flagella basal body rod protein CDO11_13375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13375 PF07559 Flagellar basal body protein FlaE CDO11_13380 PF00460 Flagella basal body rod protein CDO11_13380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13390 PF00460 Flagella basal body rod protein CDO11_13390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13395 PF02107 CDO11_13395 CDO11_13400 PF02119 CDO11_13400 CDO11_13405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDO11_13405 PF10135 CDO11_13405 CDO11_13410 PF00460 Flagella basal body rod protein CDO11_13410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO11_13415 PF00669 Bacterial flagellin N-terminal helical region CDO11_13415 PF00700 Bacterial flagellin C-terminal helical region CDO11_13420 PF00669 Bacterial flagellin N-terminal helical region CDO11_13420 PF00700 Bacterial flagellin C-terminal helical region CDO11_13425 PF02465 CDO11_13425 CDO11_13425 PF07195 CDO11_13425 CDO11_13425 PF07196 Flagellin hook IN motif CDO11_13430 PF02561 Flagellar protein FliS CDO11_13440 PF16823 CDO11_13440 CDO11_13445 PF00072 Response regulator receiver domain CDO11_13445 PF00196 Bacterial regulatory proteins, luxR family CDO11_13450 PF00309 CDO11_13450 CDO11_13450 PF04552 Sigma-54, DNA binding domain CDO11_13450 PF04963 Sigma-54 factor, core binding domain CDO11_13455 PF00072 Response regulator receiver domain CDO11_13460 PF00158 Sigma-54 interaction domain CDO11_13460 PF02954 Bacterial regulatory protein, Fis family CDO11_13460 PF06490 CDO11_13460 CDO11_13465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_13475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_13475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_13480 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_13485 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_13490 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_13495 PF00355 Rieske [2Fe-2S] domain CDO11_13495 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDO11_13500 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_13505 PF05050 Methyltransferase FkbM domain CDO11_13510 PF00535 Glycosyl transferase family 2 CDO11_13525 PF02049 CDO11_13525 CDO11_13530 PF01514 Secretory protein of YscJ/FliF family CDO11_13530 PF08345 CDO11_13530 CDO11_13535 PF01706 FliG C-terminal domain CDO11_13535 PF14841 FliG middle domain CDO11_13535 PF14842 FliG N-terminal domain CDO11_13540 PF02108 CDO11_13540 CDO11_13545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_13550 PF02050 Flagellar FliJ protein CDO11_13555 PF02120 Flagellar hook-length control protein FliK CDO11_13560 PF03748 CDO11_13560 CDO11_13565 PF01052 Surface presentation of antigens (SPOA) CDO11_13565 PF02154 Flagellar motor switch protein FliM CDO11_13570 PF01052 Surface presentation of antigens (SPOA) CDO11_13575 PF04347 CDO11_13575 CDO11_13580 PF00813 CDO11_13580 CDO11_13590 PF01313 CDO11_13590 CDO11_13595 PF01311 CDO11_13595 CDO11_13600 PF00990 GGDEF domain CDO11_13600 PF07494 Two component regulator propeller CDO11_13600 PF07495 Y_Y_Y domain CDO11_13605 PF00990 GGDEF domain CDO11_13605 PF07495 Y_Y_Y domain CDO11_13610 PF00563 EAL domain CDO11_13610 PF00990 GGDEF domain CDO11_13610 PF03707 CDO11_13610 CDO11_13615 PF01312 FlhB HrpN YscU SpaS Family CDO11_13620 PF00771 FHIPEP family CDO11_13630 PF00448 SRP54-type protein, GTPase domain CDO11_13635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO11_13640 PF04539 Sigma-70 region 3 CDO11_13640 PF04542 Sigma-70 region 2 CDO11_13640 PF04545 Sigma-70, region 4 CDO11_13645 PF00072 Response regulator receiver domain CDO11_13650 PF04344 Chemotaxis phosphatase, CheZ CDO11_13655 PF01584 CheW-like domain CDO11_13655 PF01627 Hpt domain CDO11_13655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_13655 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_13685 PF13546 CDO11_13685 CDO11_13690 PF01609 Transposase DDE domain CDO11_13690 PF05598 CDO11_13690 CDO11_13695 PF12883 Protein of unknown function (DUF3828) CDO11_13700 PF12760 Transposase zinc-ribbon domain CDO11_13700 PF12762 CDO11_13700 CDO11_13705 PF05593 CDO11_13705 CDO11_13715 PF01609 Transposase DDE domain CDO11_13715 PF05598 CDO11_13715 CDO11_13725 PF01609 Transposase DDE domain CDO11_13725 PF05598 CDO11_13725 CDO11_13755 PF00034 Cytochrome c CDO11_13760 PF00034 Cytochrome c CDO11_13810 PF12760 Transposase zinc-ribbon domain CDO11_13810 PF12762 CDO11_13810 CDO11_13815 PF13546 CDO11_13815 CDO11_13820 PF01609 Transposase DDE domain CDO11_13820 PF05598 CDO11_13820 CDO11_13830 PF00005 ABC transporter CDO11_13830 PF00664 ABC transporter transmembrane region CDO11_13840 PF13936 Helix-turn-helix domain CDO11_13845 PF01609 Transposase DDE domain CDO11_13845 PF05598 CDO11_13845 CDO11_13860 PF08173 CDO11_13860 CDO11_13870 PF07690 Major Facilitator Superfamily CDO11_13875 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO11_13875 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO11_13880 PF00171 Aldehyde dehydrogenase family CDO11_13885 PF00696 Amino acid kinase family CDO11_13885 PF01472 PUA domain CDO11_13890 PF03795 YCII-related domain CDO11_13895 PF07883 Cupin domain CDO11_13900 PF00206 Lyase CDO11_13905 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_13915 PF00696 Amino acid kinase family CDO11_13915 PF04768 Protein of unknown function (DUF619) CDO11_13920 PF01546 Peptidase family M20/M25/M40 CDO11_13920 PF07687 Peptidase dimerisation domain CDO11_13925 PF13508 Acetyltransferase (GNAT) domain CDO11_13930 PF00764 Arginosuccinate synthase CDO11_13935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO11_13935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO11_13945 PF01406 tRNA synthetases class I (C) catalytic domain CDO11_13945 PF09190 DALR domain CDO11_13950 PF02657 Fe-S metabolism associated domain CDO11_13955 PF05977 Transmembrane secretion effector CDO11_13960 PF03572 Peptidase family S41 CDO11_13965 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO11_13970 PF01809 CDO11_13970 CDO11_13975 PF01979 Amidohydrolase family CDO11_13980 PF01551 Peptidase family M23 CDO11_13990 PF13340 CDO11_13990 CDO11_13995 PF13586 CDO11_13995 CDO11_14005 PF16242 CDO11_14005 CDO11_14010 PF13546 CDO11_14010 CDO11_14015 PF01609 Transposase DDE domain CDO11_14015 PF05598 CDO11_14015 CDO11_14025 PF01095 Pectinesterase CDO11_14040 PF00295 Glycosyl hydrolases family 28 CDO11_14050 PF13419 Haloacid dehalogenase-like hydrolase CDO11_14055 PF13489 Methyltransferase domain CDO11_14060 PF01979 Amidohydrolase family CDO11_14070 PF01132 Elongation factor P (EF-P) OB domain CDO11_14070 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_14070 PF09285 Elongation factor P, C-terminal CDO11_14075 PF13394 4Fe-4S single cluster domain CDO11_14080 PF00563 EAL domain CDO11_14080 PF00672 HAMP domain CDO11_14080 PF00990 GGDEF domain CDO11_14080 PF17203 CDO11_14080 CDO11_14085 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein CDO11_14090 PF00588 SpoU rRNA Methylase family CDO11_14095 PF00459 Inositol monophosphatase family CDO11_14100 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_14100 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_14105 PF00545 ribonuclease CDO11_14110 PF01337 Barstar (barnase inhibitor) CDO11_14125 PF00005 ABC transporter CDO11_14125 PF12848 ABC transporter CDO11_14125 PF16326 CDO11_14125 CDO11_14130 PF00270 DEAD/DEAH box helicase CDO11_14130 PF00271 Helicase conserved C-terminal domain CDO11_14130 PF03880 DbpA RNA binding domain CDO11_14135 PF00156 Phosphoribosyl transferase domain CDO11_14140 PF02696 CDO11_14140 CDO11_14145 PF00135 Carboxylesterase family CDO11_14150 PF00043 Glutathione S-transferase, C-terminal domain CDO11_14150 PF02798 Glutathione S-transferase, N-terminal domain CDO11_14155 PF00313 'Cold-shock' DNA-binding domain CDO11_14160 PF02639 CDO11_14160 CDO11_14165 PF07152 YaeQ protein CDO11_14170 PF03486 HI0933-like protein CDO11_14175 PF00563 EAL domain CDO11_14175 PF00990 GGDEF domain CDO11_14175 PF13188 PAS domain CDO11_14180 PF01435 Peptidase family M48 CDO11_14185 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_14190 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_14195 PF05233 CDO11_14195 CDO11_14195 PF07879 CDO11_14195 CDO11_14205 PF01963 CDO11_14205 CDO11_14210 PF07920 Protein of unknown function (DUF1684) CDO11_14215 PF01119 DNA mismatch repair protein, C-terminal domain CDO11_14215 PF08676 MutL C terminal dimerisation domain CDO11_14215 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_14220 PF01520 N-acetylmuramoyl-L-alanine amidase CDO11_14220 PF11741 AMIN domain CDO11_14225 PF02367 Uncharacterised P-loop hydrolase UPF0079 CDO11_14230 PF01256 Carbohydrate kinase CDO11_14230 PF03853 YjeF-related protein N-terminus CDO11_14235 PF08331 CDO11_14235 CDO11_14235 PF13484 CDO11_14235 CDO11_14240 PF13586 CDO11_14240 CDO11_14245 PF13340 CDO11_14245 CDO11_14250 PF02601 CDO11_14250 CDO11_14250 PF13742 CDO11_14250 CDO11_14255 PF06057 Bacterial virulence protein (VirJ) CDO11_14265 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_14280 PF00570 HRDC domain CDO11_14280 PF01612 3'-5' exonuclease CDO11_14290 PF13298 DNA polymerase Ligase (LigD) CDO11_14300 PF00816 H-NS histone family CDO11_14330 PF05016 Plasmid stabilisation system protein CDO11_14335 PF01402 Ribbon-helix-helix protein, copG family CDO11_14345 PF01402 Ribbon-helix-helix protein, copG family CDO11_14350 PF00872 CDO11_14350 CDO11_14355 PF12760 Transposase zinc-ribbon domain CDO11_14355 PF12762 CDO11_14355 CDO11_14380 PF11743 CDO11_14380 CDO11_14390 PF04386 Stringent starvation protein B CDO11_14395 PF00043 Glutathione S-transferase, C-terminal domain CDO11_14395 PF13417 Glutathione S-transferase, N-terminal domain CDO11_14400 PF02167 Cytochrome C1 family CDO11_14405 PF00032 Cytochrome b(C-terminal)/b6/petD CDO11_14405 PF00033 Cytochrome b(N-terminal)/b6/petB CDO11_14410 PF00355 Rieske [2Fe-2S] domain CDO11_14410 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDO11_14415 PF01464 Transglycosylase SLT domain CDO11_14435 PF00919 Uncharacterized protein family UPF0004 CDO11_14435 PF01938 TRAM domain CDO11_14435 PF04055 Radical SAM superfamily CDO11_14440 PF02562 PhoH-like protein CDO11_14450 PF02130 Uncharacterized protein family UPF0054 CDO11_14460 PF00571 CBS domain CDO11_14460 PF03471 Transporter associated domain CDO11_14465 PF13387 CDO11_14465 CDO11_14470 PF01544 CorA-like Mg2+ transporter protein CDO11_14475 PF00171 Aldehyde dehydrogenase family CDO11_14490 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_14495 PF00005 ABC transporter CDO11_14495 PF08402 TOBE domain CDO11_14500 PF02321 Outer membrane efflux protein CDO11_14505 PF07690 Major Facilitator Superfamily CDO11_14510 PF13533 Biotin-lipoyl like CDO11_14510 PF16576 CDO11_14510 CDO11_14520 PF00120 Glutamine synthetase, catalytic domain CDO11_14525 PF07722 Peptidase C26 CDO11_14540 PF00072 Response regulator receiver domain CDO11_14540 PF00990 GGDEF domain CDO11_14545 PF00083 Sugar (and other) transporter CDO11_14545 PF07690 Major Facilitator Superfamily CDO11_14555 PF00384 Molybdopterin oxidoreductase CDO11_14555 PF01568 Molydopterin dinucleotide binding domain CDO11_14560 PF02634 FdhD/NarQ family CDO11_14565 PF07690 Major Facilitator Superfamily CDO11_14575 PF00202 Aminotransferase class-III CDO11_14580 PF13086 AAA domain CDO11_14580 PF13087 AAA domain CDO11_14590 PF04286 CDO11_14590 CDO11_14595 PF00072 Response regulator receiver domain CDO11_14595 PF00512 His Kinase A (phospho-acceptor) domain CDO11_14595 PF01627 Hpt domain CDO11_14595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_14595 PF03924 CHASE domain CDO11_14595 PF08448 PAS fold CDO11_14595 PF13426 PAS domain CDO11_14600 PF00072 Response regulator receiver domain CDO11_14600 PF13487 HD domain CDO11_14605 PF01609 Transposase DDE domain CDO11_14605 PF05598 CDO11_14605 CDO11_14620 PF00440 Bacterial regulatory proteins, tetR family CDO11_14620 PF16859 CDO11_14620 CDO11_14625 PF16576 CDO11_14625 CDO11_14630 PF00873 AcrB/AcrD/AcrF family CDO11_14640 PF12760 Transposase zinc-ribbon domain CDO11_14640 PF12762 CDO11_14640 CDO11_14650 PF00356 Bacterial regulatory proteins, lacI family CDO11_14650 PF13377 Periplasmic binding protein-like domain CDO11_14655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO11_14655 PF00381 PTS HPr component phosphorylation site CDO11_14655 PF00391 PEP-utilising enzyme, mobile domain CDO11_14655 PF02896 PEP-utilising enzyme, TIM barrel domain CDO11_14655 PF05524 PEP-utilising enzyme, N-terminal CDO11_14660 PF00294 pfkB family carbohydrate kinase CDO11_14665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDO11_14670 PF04966 Carbohydrate-selective porin, OprB family CDO11_14680 PF01609 Transposase DDE domain CDO11_14680 PF05598 CDO11_14680 CDO11_14685 PF01610 CDO11_14685 CDO11_14685 PF13542 CDO11_14685 CDO11_14725 PF13503 CDO11_14725 CDO11_14745 PF05954 Phage late control gene D protein (GPD) CDO11_14755 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_14760 PF05954 Phage late control gene D protein (GPD) CDO11_14765 PF13546 CDO11_14765 CDO11_14770 PF06627 Protein of unknown function (DUF1153) CDO11_14780 PF13546 CDO11_14780 CDO11_14795 PF08845 CDO11_14795 CDO11_14820 PF01609 Transposase DDE domain CDO11_14820 PF05598 CDO11_14820 CDO11_14835 PF00593 TonB dependent receptor CDO11_14835 PF07715 TonB-dependent Receptor Plug Domain CDO11_14840 PF04314 Protein of unknown function (DUF461) CDO11_14850 PF00593 TonB dependent receptor CDO11_14850 PF07715 TonB-dependent Receptor Plug Domain CDO11_14860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_14860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_14865 PF07715 TonB-dependent Receptor Plug Domain CDO11_14870 PF00593 TonB dependent receptor CDO11_14880 PF01618 CDO11_14880 CDO11_14885 PF00691 OmpA family CDO11_14885 PF13677 CDO11_14885 CDO11_14890 PF13614 AAA domain CDO11_14895 PF01584 CheW-like domain CDO11_14900 PF13466 STAS domain CDO11_14905 PF00072 Response regulator receiver domain CDO11_14910 PF01584 CheW-like domain CDO11_14910 PF01627 Hpt domain CDO11_14910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_14910 PF02895 Signal transducing histidine kinase, homodimeric domain CDO11_14925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14935 PF13557 CDO11_14935 CDO11_14940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14945 PF12760 Transposase zinc-ribbon domain CDO11_14945 PF12762 CDO11_14945 CDO11_14950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14950 PF00672 HAMP domain CDO11_14950 PF12729 CDO11_14950 CDO11_14960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14960 PF00672 HAMP domain CDO11_14960 PF05227 CHASE3 domain CDO11_14970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14970 PF12729 CDO11_14970 CDO11_14975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_14975 PF00672 HAMP domain CDO11_14975 PF12729 CDO11_14975 CDO11_14990 PF07238 PilZ domain CDO11_14990 PF07317 Flagellar regulator YcgR CDO11_14995 PF01584 CheW-like domain CDO11_15015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO11_15015 PF00672 HAMP domain CDO11_15015 PF12729 CDO11_15015 CDO11_15020 PF01739 CheR methyltransferase, SAM binding domain CDO11_15020 PF03705 CheR methyltransferase, all-alpha domain CDO11_15025 PF03975 CheD chemotactic sensory transduction CDO11_15030 PF00072 Response regulator receiver domain CDO11_15030 PF01339 CheB methylesterase CDO11_15035 PF00563 EAL domain CDO11_15035 PF00990 GGDEF domain CDO11_15035 PF13185 GAF domain CDO11_15035 PF13426 PAS domain CDO11_15045 PF00561 alpha/beta hydrolase fold CDO11_15050 PF00330 Aconitase family (aconitate hydratase) CDO11_15050 PF06434 Aconitate hydratase 2 N-terminus CDO11_15050 PF11791 Aconitate B N-terminal domain CDO11_15055 PF01850 PIN domain CDO11_15060 PF04014 Antidote-toxin recognition MazE CDO11_15065 PF00330 Aconitase family (aconitate hydratase) CDO11_15065 PF00694 Aconitase C-terminal domain CDO11_15075 PF00501 AMP-binding enzyme CDO11_15075 PF13193 AMP-binding enzyme C-terminal domain CDO11_15080 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_15085 PF00072 Response regulator receiver domain CDO11_15085 PF00512 His Kinase A (phospho-acceptor) domain CDO11_15085 PF01627 Hpt domain CDO11_15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15095 PF00072 Response regulator receiver domain CDO11_15095 PF01966 HD domain CDO11_15100 PF00152 tRNA synthetases class II (D, K and N) CDO11_15100 PF01336 OB-fold nucleic acid binding domain CDO11_15105 PF00472 RF-1 domain CDO11_15105 PF03462 PCRF domain CDO11_15110 PF04397 LytTr DNA-binding domain CDO11_15125 PF13542 CDO11_15125 CDO11_15155 PF01368 DHH family CDO11_15155 PF02272 DHHA1 domain CDO11_15165 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_15165 PF03449 Transcription elongation factor, N-terminal CDO11_15170 PF02142 MGS-like domain CDO11_15170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_15170 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO11_15180 PF00117 Glutamine amidotransferase class-I CDO11_15180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDO11_15185 PF01113 Dihydrodipicolinate reductase, N-terminus CDO11_15185 PF05173 Dihydrodipicolinate reductase, C-terminus CDO11_15190 PF13586 CDO11_15190 CDO11_15195 PF13340 CDO11_15195 CDO11_15200 PF03473 MOSC domain CDO11_15200 PF03475 3-alpha domain CDO11_15205 PF00155 Aminotransferase class I and II CDO11_15225 PF02421 Ferrous iron transport protein B CDO11_15225 PF07664 CDO11_15225 CDO11_15225 PF07670 Nucleoside recognition CDO11_15230 PF04023 FeoA domain CDO11_15235 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_15240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_15245 PF00682 HMGL-like CDO11_15250 PF00106 short chain dehydrogenase CDO11_15255 PF01132 Elongation factor P (EF-P) OB domain CDO11_15255 PF08207 Elongation factor P (EF-P) KOW-like domain CDO11_15255 PF09285 Elongation factor P, C-terminal CDO11_15275 PF00083 Sugar (and other) transporter CDO11_15285 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO11_15285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO11_15295 PF01055 Glycosyl hydrolases family 31 CDO11_15295 PF07691 PA14 domain CDO11_15295 PF16338 CDO11_15295 CDO11_15295 PF17137 CDO11_15295 CDO11_15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15305 PF03466 LysR substrate binding domain CDO11_15310 PF01081 KDPG and KHG aldolase CDO11_15315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_15315 PF13378 Enolase C-terminal domain-like CDO11_15320 PF08450 SMP-30/Gluconolaconase/LRE-like region CDO11_15325 PF05035 2-keto-3-deoxy-galactonokinase CDO11_15330 PF00037 4Fe-4S binding domain CDO11_15330 PF11953 Domain of unknown function (DUF3470) CDO11_15340 PF00701 Dihydrodipicolinate synthetase family CDO11_15345 PF13740 ACT domain CDO11_15350 PF06877 Regulator of ribonuclease activity B CDO11_15355 PF00578 AhpC/TSA family CDO11_15360 PF02562 PhoH-like protein CDO11_15360 PF13638 PIN domain CDO11_15370 PF08543 Phosphomethylpyrimidine kinase CDO11_15395 PF00581 Rhodanese-like domain CDO11_15395 PF09335 CDO11_15395 CDO11_15400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15400 PF03466 LysR substrate binding domain CDO11_15405 PF02678 Pirin CDO11_15425 PF01745 Isopentenyl transferase CDO11_15430 PF03796 DnaB-like helicase C terminal domain CDO11_15440 PF13730 CDO11_15440 CDO11_15450 PF02599 Global regulator protein family CDO11_15455 PF01411 tRNA synthetases class II (A) CDO11_15455 PF02272 DHHA1 domain CDO11_15455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_15460 PF02631 RecX family CDO11_15470 PF00154 recA bacterial DNA recombination protein CDO11_15475 PF00717 Peptidase S24-like CDO11_15475 PF01726 LexA DNA binding domain CDO11_15480 PF03109 CDO11_15480 CDO11_15485 PF02464 Competence-damaged protein CDO11_15490 PF01926 50S ribosome-binding GTPase CDO11_15490 PF13167 CDO11_15490 CDO11_15490 PF16360 CDO11_15490 CDO11_15495 PF17209 CDO11_15495 CDO11_15500 PF01715 IPP transferase CDO11_15505 PF00809 Pterin binding enzyme CDO11_15510 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_15510 PF01434 Peptidase family M41 CDO11_15510 PF06480 FtsH Extracellular CDO11_15515 PF01728 FtsJ-like methyltransferase CDO11_15520 PF01985 CRS1 / YhbY (CRM) domain CDO11_15525 PF04430 Protein of unknown function (DUF498/DUF598) CDO11_15530 PF01476 LysM domain CDO11_15530 PF01551 Peptidase family M23 CDO11_15535 PF09335 CDO11_15535 CDO11_15540 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CDO11_15545 PF01975 Survival protein SurE CDO11_15550 PF01713 Smr domain CDO11_15555 PF01142 tRNA pseudouridine synthase D (TruD) CDO11_15560 PF02542 YgbB family CDO11_15570 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDO11_15575 PF04977 Septum formation initiator CDO11_15580 PF00113 Enolase, C-terminal TIM barrel domain CDO11_15580 PF03952 Enolase, N-terminal domain CDO11_15590 PF00793 DAHP synthetase I family CDO11_15595 PF00117 Glutamine amidotransferase class-I CDO11_15595 PF06418 CTP synthase N-terminus CDO11_15605 PF00204 DNA gyrase B CDO11_15605 PF00986 DNA gyrase B subunit, carboxyl terminus CDO11_15605 PF01751 Toprim domain CDO11_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15615 PF00450 Serine carboxypeptidase CDO11_15620 PF02698 DUF218 domain CDO11_15625 PF01384 CDO11_15625 CDO11_15630 PF01865 Protein of unknown function DUF47 CDO11_15640 PF00571 CBS domain CDO11_15640 PF01595 CDO11_15640 CDO11_15640 PF03471 Transporter associated domain CDO11_15650 PF16242 CDO11_15650 CDO11_15655 PF00296 Luciferase-like monooxygenase CDO11_15670 PF00083 Sugar (and other) transporter CDO11_15680 PF00005 ABC transporter CDO11_15695 PF14907 Uncharacterised nucleotidyltransferase CDO11_15700 PF13936 Helix-turn-helix domain CDO11_15705 PF00534 Glycosyl transferases group 1 CDO11_15705 PF13579 Glycosyl transferase 4-like domain CDO11_15710 PF00534 Glycosyl transferases group 1 CDO11_15710 PF13439 Glycosyltransferase Family 4 CDO11_15715 PF08241 Methyltransferase domain CDO11_15720 PF01979 Amidohydrolase family CDO11_15725 PF13649 Methyltransferase domain CDO11_15730 PF02706 Chain length determinant protein CDO11_15740 PF00535 Glycosyl transferase family 2 CDO11_15745 PF01943 CDO11_15745 CDO11_15750 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO11_15755 PF13480 Acetyltransferase (GNAT) domain CDO11_15765 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_15770 PF05523 WxcM-like, C-terminal CDO11_15775 PF01292 Prokaryotic cytochrome b561 CDO11_15785 PF00034 Cytochrome c CDO11_15795 PF04542 Sigma-70 region 2 CDO11_15795 PF04545 Sigma-70, region 4 CDO11_15800 PF13490 Putative zinc-finger CDO11_15805 PF00082 Subtilase family CDO11_15810 PF01578 CDO11_15810 CDO11_15815 PF04995 CDO11_15815 CDO11_15820 PF03100 CcmE CDO11_15825 PF01578 CDO11_15825 CDO11_15825 PF16327 CDO11_15825 CDO11_15830 PF08534 Redoxin CDO11_15835 PF03918 Cytochrome C biogenesis protein CDO11_15865 PF03377 Xanthomonas avirulence protein, Avr/PthA CDO11_15895 PF00873 AcrB/AcrD/AcrF family CDO11_15905 PF00873 AcrB/AcrD/AcrF family CDO11_15910 PF16576 CDO11_15910 CDO11_15935 PF01609 Transposase DDE domain CDO11_15935 PF05598 CDO11_15935 CDO11_15960 PF00072 Response regulator receiver domain CDO11_15960 PF00486 Transcriptional regulatory protein, C terminal CDO11_15965 PF00034 Cytochrome c CDO11_15965 PF03150 Di-haem cytochrome c peroxidase CDO11_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_15975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_15975 PF03466 LysR substrate binding domain CDO11_15980 PF06812 CDO11_15980 CDO11_16000 PF00069 Protein kinase domain CDO11_16000 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_16005 PF13672 Protein phosphatase 2C CDO11_16010 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) CDO11_16015 PF06744 CDO11_16015 CDO11_16015 PF06761 CDO11_16015 CDO11_16015 PF14331 CDO11_16015 CDO11_16020 PF00691 OmpA family CDO11_16020 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CDO11_16025 PF05936 CDO11_16025 CDO11_16040 PF05954 Phage late control gene D protein (GPD) CDO11_16045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_16055 PF14441 CDO11_16055 CDO11_16060 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_16060 PF07724 AAA domain (Cdc48 subfamily) CDO11_16060 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_16065 PF06996 CDO11_16065 CDO11_16070 PF05947 CDO11_16070 CDO11_16075 PF04965 Gene 25-like lysozyme CDO11_16080 PF07024 ImpE protein CDO11_16085 PF05638 Protein of unknown function (DUF796) CDO11_16090 PF05943 CDO11_16090 CDO11_16095 PF05591 CDO11_16095 CDO11_16105 PF13546 CDO11_16105 CDO11_16110 PF01609 Transposase DDE domain CDO11_16110 PF05598 CDO11_16110 CDO11_16120 PF01610 CDO11_16120 CDO11_16120 PF13542 CDO11_16120 CDO11_16125 PF01609 Transposase DDE domain CDO11_16125 PF05598 CDO11_16125 CDO11_16160 PF13683 CDO11_16160 CDO11_16170 PF01106 NifU-like domain CDO11_16175 PF01329 Pterin 4 alpha carbinolamine dehydratase CDO11_16180 PF03544 Gram-negative bacterial TonB protein C-terminal CDO11_16185 PF02535 CDO11_16185 CDO11_16200 PF00849 RNA pseudouridylate synthase CDO11_16200 PF01479 S4 domain CDO11_16205 PF00575 S1 RNA binding domain CDO11_16205 PF10150 Ribonuclease E/G family CDO11_16215 PF01609 Transposase DDE domain CDO11_16220 PF13340 CDO11_16220 CDO11_16225 PF00072 Response regulator receiver domain CDO11_16225 PF00196 Bacterial regulatory proteins, luxR family CDO11_16230 PF00581 Rhodanese-like domain CDO11_16235 PF01609 Transposase DDE domain CDO11_16235 PF05598 CDO11_16235 CDO11_16245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_16250 PF03486 HI0933-like protein CDO11_16255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO11_16255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO11_16255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO11_16265 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_16270 PF13546 CDO11_16270 CDO11_16285 PF10685 CDO11_16285 CDO11_16290 PF01609 Transposase DDE domain CDO11_16290 PF05598 CDO11_16290 CDO11_16295 PF01609 Transposase DDE domain CDO11_16295 PF05598 CDO11_16295 CDO11_16300 PF12760 Transposase zinc-ribbon domain CDO11_16300 PF12762 CDO11_16300 CDO11_16310 PF12760 Transposase zinc-ribbon domain CDO11_16310 PF12762 CDO11_16310 CDO11_16325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_16325 PF10414 Sirohaem synthase dimerisation region CDO11_16325 PF13241 Putative NAD(P)-binding CDO11_16325 PF14824 Sirohaem biosynthesis protein central CDO11_16350 PF12804 MobA-like NTP transferase domain CDO11_16355 PF00994 Probable molybdopterin binding domain CDO11_16355 PF03453 MoeA N-terminal region (domain I and II) CDO11_16355 PF03454 MoeA C-terminal region (domain IV) CDO11_16380 PF01610 CDO11_16380 CDO11_16380 PF13542 CDO11_16380 CDO11_16390 PF13340 CDO11_16390 CDO11_16395 PF13358 DDE superfamily endonuclease CDO11_16395 PF13551 Winged helix-turn helix CDO11_16395 PF13592 CDO11_16395 CDO11_16405 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) CDO11_16420 PF07715 TonB-dependent Receptor Plug Domain CDO11_16425 PF07715 TonB-dependent Receptor Plug Domain CDO11_16440 PF00326 Prolyl oligopeptidase family CDO11_16440 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_16445 PF04616 Glycosyl hydrolases family 43 CDO11_16450 PF00754 F5/8 type C domain CDO11_16450 PF07532 CDO11_16450 CDO11_16455 PF00593 TonB dependent receptor CDO11_16455 PF07715 TonB-dependent Receptor Plug Domain CDO11_16465 PF00082 Subtilase family CDO11_16465 PF09286 Pro-kumamolisin, activation domain CDO11_16500 PF00326 Prolyl oligopeptidase family CDO11_16500 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_16505 PF13520 Amino acid permease CDO11_16510 PF05960 Bacterial protein of unknown function (DUF885) CDO11_16515 PF05960 Bacterial protein of unknown function (DUF885) CDO11_16520 PF00557 Metallopeptidase family M24 CDO11_16520 PF01321 Creatinase/Prolidase N-terminal domain CDO11_16525 PF00171 Aldehyde dehydrogenase family CDO11_16530 PF00701 Dihydrodipicolinate synthetase family CDO11_16535 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_16540 PF13510 2Fe-2S iron-sulfur cluster binding domain CDO11_16545 PF01266 FAD dependent oxidoreductase CDO11_16550 PF05544 Proline racemase CDO11_16555 PF08448 PAS fold CDO11_16555 PF12833 Helix-turn-helix domain CDO11_16560 PF00448 SRP54-type protein, GTPase domain CDO11_16560 PF02881 SRP54-type protein, helical bundle domain CDO11_16575 PF00633 Helix-hairpin-helix motif CDO11_16575 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_16575 PF14815 NUDIX domain CDO11_16580 PF04362 Bacterial Fe(2+) trafficking CDO11_16585 PF00072 Response regulator receiver domain CDO11_16585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_16585 PF13426 PAS domain CDO11_16630 PF08843 Nucleotidyl transferase of unknown function (DUF1814) CDO11_16635 PF13338 CDO11_16635 CDO11_16645 PF04703 FaeA-like protein CDO11_16655 PF13358 DDE superfamily endonuclease CDO11_16655 PF13551 Winged helix-turn helix CDO11_16655 PF13592 CDO11_16655 CDO11_16675 PF08212 Lipocalin-like domain CDO11_16695 PF13358 DDE superfamily endonuclease CDO11_16695 PF13518 Helix-turn-helix domain CDO11_16700 PF01963 CDO11_16700 CDO11_16705 PF06172 Cupin superfamily (DUF985) CDO11_16710 PF03808 CDO11_16710 CDO11_16715 PF04230 CDO11_16715 CDO11_16725 PF13440 CDO11_16725 CDO11_16730 PF13692 Glycosyl transferases group 1 CDO11_16735 PF00534 Glycosyl transferases group 1 CDO11_16735 PF13439 Glycosyltransferase Family 4 CDO11_16740 PF01757 CDO11_16740 CDO11_16745 PF01757 CDO11_16745 CDO11_16755 PF02397 CDO11_16755 CDO11_16755 PF13727 CoA-binding domain CDO11_16760 PF02706 Chain length determinant protein CDO11_16760 PF13807 CDO11_16760 CDO11_16765 PF02563 Polysaccharide biosynthesis/export protein CDO11_16765 PF10531 SLBB domain CDO11_16775 PF13411 MerR HTH family regulatory protein CDO11_16780 PF00216 Bacterial DNA-binding protein CDO11_16785 PF01588 Putative tRNA binding domain CDO11_16785 PF03147 Ferredoxin-fold anticodon binding domain CDO11_16785 PF03483 B3/4 domain CDO11_16785 PF03484 tRNA synthetase B5 domain CDO11_16790 PF01409 tRNA synthetases class II core domain (F) CDO11_16790 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDO11_16795 PF00453 Ribosomal protein L20 CDO11_16800 PF01632 Ribosomal protein L35 CDO11_16805 PF00707 Translation initiation factor IF-3, C-terminal domain CDO11_16805 PF05198 Translation initiation factor IF-3, N-terminal domain CDO11_16810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO11_16810 PF02824 TGS domain CDO11_16810 PF03129 Anticodon binding domain CDO11_16810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_16840 PF00271 Helicase conserved C-terminal domain CDO11_16840 PF02151 UvrB/uvrC motif CDO11_16840 PF04851 Type III restriction enzyme, res subunit CDO11_16840 PF12344 Ultra-violet resistance protein B CDO11_16845 PF12019 Type II transport protein GspH CDO11_16855 PF07963 Prokaryotic N-terminal methylation motif CDO11_16855 PF16732 CDO11_16855 CDO11_16860 PF05567 Neisseria PilC beta-propeller domain CDO11_16865 PF14341 CDO11_16865 CDO11_16875 PF07963 Prokaryotic N-terminal methylation motif CDO11_16880 PF07963 Prokaryotic N-terminal methylation motif CDO11_16880 PF12019 Type II transport protein GspH CDO11_16885 PF03641 Possible lysine decarboxylase CDO11_16885 PF11892 Domain of unknown function (DUF3412) CDO11_16885 PF14793 Domain of unknown function (DUF4478) CDO11_16890 PF07715 TonB-dependent Receptor Plug Domain CDO11_16890 PF13620 Carboxypeptidase regulatory-like domain CDO11_16900 PF01914 CDO11_16900 CDO11_16905 PF00106 short chain dehydrogenase CDO11_16910 PF00462 Glutaredoxin CDO11_16915 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO11_16915 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO11_16920 PF02222 ATP-grasp domain CDO11_16925 PF00731 AIR carboxylase CDO11_16930 PF03966 Trm112p-like protein CDO11_16935 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDO11_16935 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDO11_16940 PF10030 CDO11_16940 CDO11_16945 PF00013 KH domain CDO11_16945 PF00575 S1 RNA binding domain CDO11_16945 PF01138 3' exoribonuclease family, domain 1 CDO11_16945 PF03725 3' exoribonuclease family, domain 2 CDO11_16945 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDO11_16950 PF00312 Ribosomal protein S15 CDO11_16955 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDO11_16955 PF09157 Pseudouridine synthase II TruB, C-terminal CDO11_16955 PF16198 CDO11_16955 CDO11_16960 PF02033 Ribosome-binding factor A CDO11_16965 PF00009 Elongation factor Tu GTP binding domain CDO11_16965 PF04760 Translation initiation factor IF-2, N-terminal region CDO11_16965 PF08364 CDO11_16965 CDO11_16965 PF11987 Translation-initiation factor 2 CDO11_16970 PF00575 S1 RNA binding domain CDO11_16970 PF08529 NusA N-terminal domain CDO11_16970 PF13184 NusA-like KH domain CDO11_16970 PF14520 Helix-hairpin-helix domain CDO11_16975 PF02576 Uncharacterised BCR, YhbC family COG0779 CDO11_16975 PF17384 CDO11_16975 CDO11_16985 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_16990 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_16995 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_16995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_17000 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_17005 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDO11_17010 PF12838 4Fe-4S dicluster domain CDO11_17015 PF00146 NADH dehydrogenase CDO11_17020 PF00384 Molybdopterin oxidoreductase CDO11_17020 PF01568 Molydopterin dinucleotide binding domain CDO11_17020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO11_17020 PF13510 2Fe-2S iron-sulfur cluster binding domain CDO11_17025 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO11_17025 PF10531 SLBB domain CDO11_17025 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO11_17030 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CDO11_17035 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDO11_17040 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDO11_17045 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDO11_17050 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDO11_17060 PF03840 Preprotein translocase SecG subunit CDO11_17065 PF00121 Triosephosphate isomerase CDO11_17070 PF00106 short chain dehydrogenase CDO11_17080 PF01152 Bacterial-like globin CDO11_17085 PF13586 CDO11_17085 CDO11_17090 PF13340 CDO11_17090 CDO11_17100 PF00563 EAL domain CDO11_17100 PF00672 HAMP domain CDO11_17100 PF00990 GGDEF domain CDO11_17100 PF14827 Sensory domain of two-component sensor kinase CDO11_17110 PF03171 2OG-Fe(II) oxygenase superfamily CDO11_17110 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CDO11_17115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO11_17115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO11_17115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO11_17115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO11_17120 PF01039 Carboxyl transferase domain CDO11_17125 PF00290 Tryptophan synthase alpha chain CDO11_17135 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_17140 PF03466 LysR substrate binding domain CDO11_17145 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDO11_17150 PF01416 tRNA pseudouridine synthase CDO11_17170 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO11_17170 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDO11_17175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_17175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_17180 PF01264 Chorismate synthase CDO11_17185 PF05175 Methyltransferase small domain CDO11_17190 PF02630 SCO1/SenC CDO11_17195 PF02666 CDO11_17195 CDO11_17205 PF01464 Transglycosylase SLT domain CDO11_17205 PF01476 LysM domain CDO11_17215 PF05872 CDO11_17215 CDO11_17220 PF13936 Helix-turn-helix domain CDO11_17225 PF01694 Rhomboid family CDO11_17235 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_17235 PF03449 Transcription elongation factor, N-terminal CDO11_17240 PF00919 Uncharacterized protein family UPF0004 CDO11_17240 PF04055 Radical SAM superfamily CDO11_17245 PF01738 Dienelactone hydrolase family CDO11_17250 PF01230 HIT domain CDO11_17270 PF00692 dUTPase CDO11_17275 PF10609 ParA/MinD ATPase like CDO11_17290 PF01431 Peptidase family M13 CDO11_17290 PF05649 Peptidase family M13 CDO11_17295 PF01694 Rhomboid family CDO11_17300 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO11_17305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO11_17310 PF12760 Transposase zinc-ribbon domain CDO11_17310 PF12762 CDO11_17310 CDO11_17320 PF01266 FAD dependent oxidoreductase CDO11_17325 PF04235 CDO11_17325 CDO11_17330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO11_17335 PF00877 NlpC/P60 family CDO11_17340 PF00877 NlpC/P60 family CDO11_17345 PF03061 Thioesterase superfamily CDO11_17360 PF00245 Alkaline phosphatase CDO11_17365 PF01171 PP-loop family CDO11_17365 PF09179 TilS substrate binding domain CDO11_17365 PF11734 TilS substrate C-terminal domain CDO11_17370 PF02609 Exonuclease VII small subunit CDO11_17375 PF00348 Polyprenyl synthetase CDO11_17385 PF09685 CDO11_17385 CDO11_17395 PF01523 Putative modulator of DNA gyrase CDO11_17400 PF04751 Protein of unknown function (DUF615) CDO11_17405 PF01523 Putative modulator of DNA gyrase CDO11_17415 PF13116 CDO11_17415 CDO11_17415 PF13502 CDO11_17415 CDO11_17420 PF00575 S1 RNA binding domain CDO11_17420 PF10150 Ribonuclease E/G family CDO11_17425 PF02545 Maf-like protein CDO11_17430 PF04402 Protein of unknown function (DUF541) CDO11_17440 PF00593 TonB dependent receptor CDO11_17440 PF07715 TonB-dependent Receptor Plug Domain CDO11_17440 PF13620 Carboxypeptidase regulatory-like domain CDO11_17455 PF02590 Predicted SPOUT methyltransferase CDO11_17475 PF02410 Oligomerisation domain CDO11_17480 PF01467 Cytidylyltransferase CDO11_17485 PF06144 DNA polymerase III, delta subunit CDO11_17490 PF04390 Lipopolysaccharide-assembly CDO11_17500 PF00133 tRNA synthetases class I (I, L, M and V) CDO11_17500 PF08264 Anticodon-binding domain of tRNA CDO11_17500 PF13603 Leucyl-tRNA synthetase, Domain 2 CDO11_17505 PF06197 CDO11_17505 CDO11_17510 PF00085 Thioredoxin CDO11_17510 PF14559 Tetratricopeptide repeat CDO11_17510 PF14561 Tetratricopeptide repeat CDO11_17515 PF14539 Domain of unknown function (DUF4442) CDO11_17520 PF12760 Transposase zinc-ribbon domain CDO11_17520 PF12762 CDO11_17520 CDO11_17525 PF13340 CDO11_17525 CDO11_17530 PF13586 CDO11_17530 CDO11_17545 PF13546 CDO11_17545 CDO11_17550 PF04070 CDO11_17550 CDO11_17555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO11_17565 PF13546 CDO11_17565 CDO11_17570 PF01609 Transposase DDE domain CDO11_17585 PF12760 Transposase zinc-ribbon domain CDO11_17585 PF12762 CDO11_17585 CDO11_17590 PF13340 CDO11_17590 CDO11_17595 PF13586 CDO11_17595 CDO11_17600 PF00128 Alpha amylase, catalytic domain CDO11_17600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO11_17605 PF01609 Transposase DDE domain CDO11_17605 PF05598 CDO11_17605 CDO11_17610 PF01609 Transposase DDE domain CDO11_17610 PF05598 CDO11_17610 CDO11_17620 PF13936 Helix-turn-helix domain CDO11_17625 PF13586 CDO11_17625 CDO11_17630 PF13340 CDO11_17630 CDO11_17645 PF00816 H-NS histone family CDO11_17655 PF01609 Transposase DDE domain CDO11_17665 PF00589 Phage integrase family CDO11_17685 PF00657 GDSL-like Lipase/Acylhydrolase CDO11_17685 PF03797 Autotransporter beta-domain CDO11_17690 PF02597 ThiS family CDO11_17695 PF05690 Thiazole biosynthesis protein ThiG CDO11_17700 PF02390 Putative methyltransferase CDO11_17705 PF02080 TrkA-C domain CDO11_17705 PF03600 Citrate transporter CDO11_17710 PF00355 Rieske [2Fe-2S] domain CDO11_17730 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_17735 PF01741 Large-conductance mechanosensitive channel, MscL CDO11_17745 PF13586 CDO11_17745 CDO11_17750 PF13340 CDO11_17750 CDO11_17765 PF00588 SpoU rRNA Methylase family CDO11_17765 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO11_17785 PF12760 Transposase zinc-ribbon domain CDO11_17785 PF12762 CDO11_17785 CDO11_17795 PF01433 Peptidase family M1 CDO11_17795 PF11838 ERAP1-like C-terminal domain CDO11_17800 PF00873 AcrB/AcrD/AcrF family CDO11_17805 PF16576 CDO11_17805 CDO11_17810 PF00009 Elongation factor Tu GTP binding domain CDO11_17810 PF01583 Adenylylsulphate kinase CDO11_17815 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_17820 PF00175 Oxidoreductase NAD-binding domain CDO11_17820 PF00258 Flavodoxin CDO11_17820 PF00667 FAD binding domain CDO11_17825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDO11_17825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO11_17830 PF01507 Phosphoadenosine phosphosulfate reductase family CDO11_17835 PF03929 CDO11_17835 CDO11_17840 PF00593 TonB dependent receptor CDO11_17840 PF07715 TonB-dependent Receptor Plug Domain CDO11_17845 PF11162 CDO11_17845 CDO11_17850 PF01590 GAF domain CDO11_17850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_17880 PF03466 LysR substrate binding domain CDO11_17885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_17885 PF13241 Putative NAD(P)-binding CDO11_17890 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_17900 PF04191 Phospholipid methyltransferase CDO11_17905 PF01661 Macro domain CDO11_17910 PF00274 Fructose-bisphosphate aldolase class-I CDO11_17915 PF00224 Pyruvate kinase, barrel domain CDO11_17915 PF02887 Pyruvate kinase, alpha/beta domain CDO11_17920 PF13419 Haloacid dehalogenase-like hydrolase CDO11_17925 PF00162 Phosphoglycerate kinase CDO11_17935 PF13163 CDO11_17935 CDO11_17940 PF10101 CDO11_17940 CDO11_17960 PF00199 Catalase CDO11_17960 PF06628 Catalase-related immune-responsive CDO11_17985 PF01609 Transposase DDE domain CDO11_17985 PF05598 CDO11_17985 CDO11_17995 PF13358 DDE superfamily endonuclease CDO11_17995 PF13551 Winged helix-turn helix CDO11_17995 PF13592 CDO11_17995 CDO11_18005 PF08448 PAS fold CDO11_18005 PF12833 Helix-turn-helix domain CDO11_18035 PF00326 Prolyl oligopeptidase family CDO11_18035 PF07676 WD40-like Beta Propeller Repeat CDO11_18045 PF13557 CDO11_18045 CDO11_18060 PF01609 Transposase DDE domain CDO11_18060 PF05598 CDO11_18060 CDO11_18065 PF03169 CDO11_18065 CDO11_18070 PF13365 Trypsin-like peptidase domain CDO11_18075 PF08668 HDOD domain CDO11_18085 PF02811 PHP domain CDO11_18085 PF07733 Bacterial DNA polymerase III alpha subunit CDO11_18085 PF14579 Helix-hairpin-helix motif CDO11_18095 PF00817 impB/mucB/samB family CDO11_18105 PF00717 Peptidase S24-like CDO11_18105 PF01726 LexA DNA binding domain CDO11_18110 PF04014 Antidote-toxin recognition MazE CDO11_18115 PF02661 Fic/DOC family CDO11_18135 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_18140 PF00440 Bacterial regulatory proteins, tetR family CDO11_18160 PF00069 Protein kinase domain CDO11_18170 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDO11_18170 PF04851 Type III restriction enzyme, res subunit CDO11_18170 PF11867 CDO11_18170 CDO11_18180 PF14355 CDO11_18180 CDO11_18185 PF01420 Type I restriction modification DNA specificity domain CDO11_18185 PF01909 Nucleotidyltransferase domain CDO11_18190 PF08780 Nucleotidyltransferase substrate binding protein like CDO11_18195 PF02384 N-6 DNA Methylase CDO11_18195 PF12161 HsdM N-terminal domain CDO11_18200 PF04471 Restriction endonuclease CDO11_18205 PF05016 Plasmid stabilisation system protein CDO11_18215 PF00271 Helicase conserved C-terminal domain CDO11_18215 PF04851 Type III restriction enzyme, res subunit CDO11_18215 PF08463 CDO11_18215 CDO11_18215 PF13643 CDO11_18215 CDO11_18220 PF07751 CDO11_18220 CDO11_18225 PF02384 N-6 DNA Methylase CDO11_18225 PF12161 HsdM N-terminal domain CDO11_18230 PF01420 Type I restriction modification DNA specificity domain CDO11_18235 PF05016 Plasmid stabilisation system protein CDO11_18255 PF05954 Phage late control gene D protein (GPD) CDO11_18280 PF13503 CDO11_18280 CDO11_18295 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_18295 PF02861 Clp amino terminal domain CDO11_18295 PF07724 AAA domain (Cdc48 subfamily) CDO11_18295 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_18300 PF06996 CDO11_18300 CDO11_18305 PF05947 CDO11_18305 CDO11_18310 PF04965 Gene 25-like lysozyme CDO11_18315 PF05638 Protein of unknown function (DUF796) CDO11_18320 PF05943 CDO11_18320 CDO11_18325 PF05591 CDO11_18325 CDO11_18340 PF05936 CDO11_18340 CDO11_18345 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CDO11_18350 PF05954 Phage late control gene D protein (GPD) CDO11_18350 PF10106 CDO11_18350 CDO11_18350 PF13296 CDO11_18350 CDO11_18355 PF05954 Phage late control gene D protein (GPD) CDO11_18355 PF10106 CDO11_18355 CDO11_18355 PF13296 CDO11_18355 CDO11_18360 PF00182 Chitinase class I CDO11_18365 PF10106 CDO11_18365 CDO11_18365 PF13296 CDO11_18365 CDO11_18375 PF05954 Phage late control gene D protein (GPD) CDO11_18375 PF10106 CDO11_18375 CDO11_18375 PF13296 CDO11_18375 CDO11_18395 PF01609 Transposase DDE domain CDO11_18400 PF15584 CDO11_18400 CDO11_18415 PF01609 Transposase DDE domain CDO11_18425 PF15584 CDO11_18425 CDO11_18435 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CDO11_18440 PF05954 Phage late control gene D protein (GPD) CDO11_18440 PF10106 CDO11_18440 CDO11_18440 PF13296 CDO11_18440 CDO11_18445 PF10106 CDO11_18445 CDO11_18450 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) CDO11_18455 PF11745 CDO11_18455 CDO11_18460 PF13503 CDO11_18460 CDO11_18465 PF05954 Phage late control gene D protein (GPD) CDO11_18465 PF10106 CDO11_18465 CDO11_18465 PF13296 CDO11_18465 CDO11_18470 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18480 PF10106 CDO11_18480 CDO11_18485 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) CDO11_18490 PF11745 CDO11_18490 CDO11_18495 PF11745 CDO11_18495 CDO11_18505 PF11745 CDO11_18505 CDO11_18510 PF11745 CDO11_18510 CDO11_18515 PF13503 CDO11_18515 CDO11_18520 PF05954 Phage late control gene D protein (GPD) CDO11_18520 PF10106 CDO11_18520 CDO11_18520 PF13296 CDO11_18520 CDO11_18525 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18535 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_18545 PF05954 Phage late control gene D protein (GPD) CDO11_18545 PF10106 CDO11_18545 CDO11_18545 PF13296 CDO11_18545 CDO11_18555 PF06812 CDO11_18555 CDO11_18560 PF00691 OmpA family CDO11_18565 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) CDO11_18580 PF05488 PAAR motif CDO11_18585 PF13539 D-alanyl-D-alanine carboxypeptidase CDO11_18595 PF01527 Transposase CDO11_18595 PF13359 CDO11_18595 CDO11_18600 PF02222 ATP-grasp domain CDO11_18605 PF01145 SPFH domain / Band 7 family CDO11_18615 PF03869 Arc-like DNA binding domain CDO11_18620 PF02557 D-alanyl-D-alanine carboxypeptidase CDO11_18625 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO11_18630 PF04241 CDO11_18630 CDO11_18635 PF10604 Polyketide cyclase / dehydrase and lipid transport CDO11_18640 PF00072 Response regulator receiver domain CDO11_18640 PF00196 Bacterial regulatory proteins, luxR family CDO11_18645 PF07730 Histidine kinase CDO11_18655 PF00583 Acetyltransferase (GNAT) family CDO11_18660 PF03775 Septum formation inhibitor MinC, C-terminal domain CDO11_18660 PF05209 Septum formation inhibitor MinC, N-terminal domain CDO11_18665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO11_18670 PF03776 Septum formation topological specificity factor MinE CDO11_18680 PF00512 His Kinase A (phospho-acceptor) domain CDO11_18680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_18685 PF00072 Response regulator receiver domain CDO11_18685 PF00486 Transcriptional regulatory protein, C terminal CDO11_18690 PF13231 CDO11_18690 CDO11_18695 PF01569 PAP2 superfamily CDO11_18700 PF00884 Sulfatase CDO11_18700 PF08019 CDO11_18700 CDO11_18705 PF01401 Angiotensin-converting enzyme CDO11_18720 PF00005 ABC transporter CDO11_18720 PF00664 ABC transporter transmembrane region CDO11_18720 PF03412 Peptidase C39 family CDO11_18725 PF13437 HlyD family secretion protein CDO11_18725 PF13533 Biotin-lipoyl like CDO11_18730 PF13469 Sulfotransferase family CDO11_18740 PF02347 Glycine cleavage system P-protein CDO11_18755 PF08774 VRR-NUC domain CDO11_18760 PF11876 CDO11_18760 CDO11_18765 PF11876 CDO11_18765 CDO11_18775 PF13936 Helix-turn-helix domain CDO11_18780 PF13340 CDO11_18780 CDO11_18785 PF13586 CDO11_18785 CDO11_18790 PF13358 DDE superfamily endonuclease CDO11_18790 PF13551 Winged helix-turn helix CDO11_18790 PF13592 CDO11_18790 CDO11_18795 PF01196 Ribosomal protein L17 CDO11_18800 PF01000 RNA polymerase Rpb3/RpoA insert domain CDO11_18800 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDO11_18800 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDO11_18805 PF00163 Ribosomal protein S4/S9 N-terminal domain CDO11_18805 PF01479 S4 domain CDO11_18810 PF00411 Ribosomal protein S11 CDO11_18815 PF00416 Ribosomal protein S13/S18 CDO11_18820 PF00344 SecY translocase CDO11_18825 PF00828 Ribosomal protein L18e/L15 CDO11_18830 PF00327 Ribosomal protein L30p/L7e CDO11_18835 PF00333 Ribosomal protein S5, N-terminal domain CDO11_18835 PF03719 Ribosomal protein S5, C-terminal domain CDO11_18840 PF00861 Ribosomal L18p/L5e family CDO11_18845 PF00347 Ribosomal protein L6 CDO11_18850 PF00410 Ribosomal protein S8 CDO11_18855 PF00253 Ribosomal protein S14p/S29e CDO11_18860 PF00281 Ribosomal protein L5 CDO11_18860 PF00673 ribosomal L5P family C-terminus CDO11_18865 PF00467 KOW motif CDO11_18865 PF17136 CDO11_18865 CDO11_18870 PF00238 Ribosomal protein L14p/L23e CDO11_18875 PF00366 Ribosomal protein S17 CDO11_18880 PF00831 Ribosomal L29 protein CDO11_18885 PF00252 Ribosomal protein L16p/L10e CDO11_18890 PF00189 Ribosomal protein S3, C-terminal domain CDO11_18890 PF07650 KH domain CDO11_18895 PF00237 Ribosomal protein L22p/L17e CDO11_18900 PF00203 Ribosomal protein S19 CDO11_18905 PF00181 Ribosomal Proteins L2, RNA binding domain CDO11_18905 PF03947 Ribosomal Proteins L2, C-terminal domain CDO11_18910 PF00276 Ribosomal protein L23 CDO11_18915 PF00573 Ribosomal protein L4/L1 family CDO11_18920 PF00297 Ribosomal protein L3 CDO11_18925 PF00338 Ribosomal protein S10p/S20e CDO11_18935 PF00009 Elongation factor Tu GTP binding domain CDO11_18935 PF03143 Elongation factor Tu C-terminal domain CDO11_18935 PF03144 Elongation factor Tu domain 2 CDO11_18940 PF00009 Elongation factor Tu GTP binding domain CDO11_18940 PF00679 Elongation factor G C-terminus CDO11_18940 PF03144 Elongation factor Tu domain 2 CDO11_18940 PF03764 Elongation factor G, domain IV CDO11_18940 PF14492 Elongation Factor G, domain II CDO11_18945 PF00177 Ribosomal protein S7p/S5e CDO11_18950 PF00164 Ribosomal protein S12/S23 CDO11_18955 PF00623 RNA polymerase Rpb1, domain 2 CDO11_18955 PF04983 RNA polymerase Rpb1, domain 3 CDO11_18955 PF04997 RNA polymerase Rpb1, domain 1 CDO11_18955 PF04998 RNA polymerase Rpb1, domain 5 CDO11_18955 PF05000 RNA polymerase Rpb1, domain 4 CDO11_18960 PF00562 RNA polymerase Rpb2, domain 6 CDO11_18960 PF04560 RNA polymerase Rpb2, domain 7 CDO11_18960 PF04561 RNA polymerase Rpb2, domain 2 CDO11_18960 PF04563 RNA polymerase beta subunit CDO11_18960 PF04565 RNA polymerase Rpb2, domain 3 CDO11_18960 PF10385 RNA polymerase beta subunit external 1 domain CDO11_18965 PF00542 Ribosomal protein L7/L12 C-terminal domain CDO11_18965 PF16320 CDO11_18965 CDO11_18970 PF00466 Ribosomal protein L10 CDO11_18975 PF00687 Ribosomal protein L1p/L10e family CDO11_18980 PF00298 Ribosomal protein L11, RNA binding domain CDO11_18980 PF03946 Ribosomal protein L11, N-terminal domain CDO11_18990 PF00467 KOW motif CDO11_18990 PF02357 Transcription termination factor nusG CDO11_18995 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDO11_19005 PF00009 Elongation factor Tu GTP binding domain CDO11_19005 PF03143 Elongation factor Tu C-terminal domain CDO11_19005 PF03144 Elongation factor Tu domain 2 CDO11_19025 PF01926 50S ribosome-binding GTPase CDO11_19025 PF06071 Protein of unknown function (DUF933) CDO11_19030 PF01195 Peptidyl-tRNA hydrolase CDO11_19035 PF01386 Ribosomal L25p family CDO11_19035 PF14693 Ribosomal protein TL5, C-terminal domain CDO11_19040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDO11_19040 PF14572 Phosphoribosyl synthetase-associated domain CDO11_19050 PF00288 GHMP kinases N terminal domain CDO11_19050 PF08544 GHMP kinases C terminal CDO11_19055 PF03550 Outer membrane lipoprotein LolB CDO11_19060 PF13429 Tetratricopeptide repeat CDO11_19065 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDO11_19065 PF01488 Shikimate / quinate 5-dehydrogenase CDO11_19065 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDO11_19070 PF00472 RF-1 domain CDO11_19070 PF03462 PCRF domain CDO11_19075 PF13844 Glycosyl transferase family 41 CDO11_19075 PF14559 Tetratricopeptide repeat CDO11_19080 PF00994 Probable molybdopterin binding domain CDO11_19085 PF03976 Polyphosphate kinase 2 (PPK2) CDO11_19095 PF00708 Acylphosphatase CDO11_19100 PF00578 AhpC/TSA family CDO11_19105 PF03631 CDO11_19105 CDO11_19110 PF03358 NADPH-dependent FMN reductase CDO11_19115 PF09842 CDO11_19115 CDO11_19125 PF02055 O-Glycosyl hydrolase family 30 CDO11_19125 PF17189 CDO11_19125 CDO11_19130 PF00710 Asparaginase CDO11_19135 PF04073 Aminoacyl-tRNA editing domain CDO11_19145 PF01063 Aminotransferase class IV CDO11_19150 PF01883 Domain of unknown function DUF59 CDO11_19175 PF02233 NAD(P) transhydrogenase beta subunit CDO11_19180 PF12769 Domain of unknown function (DUF3814) CDO11_19185 PF04542 Sigma-70 region 2 CDO11_19185 PF08281 Sigma-70, region 4 CDO11_19195 PF11304 CDO11_19195 CDO11_19200 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDO11_19200 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDO11_19205 PF07793 CDO11_19205 CDO11_19210 PF00881 Nitroreductase family CDO11_19215 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_19215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_19220 PF00293 NUDIX domain CDO11_19225 PF05013 N-formylglutamate amidohydrolase CDO11_19230 PF00561 alpha/beta hydrolase fold CDO11_19255 PF00665 Integrase core domain CDO11_19255 PF13936 Helix-turn-helix domain CDO11_19260 PF05175 Methyltransferase small domain CDO11_19265 PF00578 AhpC/TSA family CDO11_19265 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDO11_19270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_19270 PF13192 Thioredoxin domain CDO11_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_19275 PF03466 LysR substrate binding domain CDO11_19285 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO11_19285 PF14760 Rnk N-terminus CDO11_19290 PF00923 Transaldolase CDO11_19295 PF13546 CDO11_19295 CDO11_19300 PF12760 Transposase zinc-ribbon domain CDO11_19300 PF12762 CDO11_19300 CDO11_19310 PF01965 DJ-1/PfpI family CDO11_19320 PF01625 Peptide methionine sulfoxide reductase CDO11_19325 PF08332 Calcium/calmodulin dependent protein kinase II Association CDO11_19345 PF02627 Carboxymuconolactone decarboxylase family CDO11_19350 PF00462 Glutaredoxin CDO11_19355 PF01435 Peptidase family M48 CDO11_19360 PF00072 Response regulator receiver domain CDO11_19360 PF00486 Transcriptional regulatory protein, C terminal CDO11_19365 PF00512 His Kinase A (phospho-acceptor) domain CDO11_19365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19365 PF11808 CDO11_19365 CDO11_19370 PF02503 Polyphosphate kinase middle domain CDO11_19370 PF13089 Polyphosphate kinase N-terminal domain CDO11_19370 PF13090 Polyphosphate kinase C-terminal domain CDO11_19375 PF02541 Ppx/GppA phosphatase family CDO11_19380 PF00534 Glycosyl transferases group 1 CDO11_19380 PF13439 Glycosyltransferase Family 4 CDO11_19385 PF01569 PAP2 superfamily CDO11_19390 PF00149 Calcineurin-like phosphoesterase CDO11_19410 PF04305 CDO11_19410 CDO11_19415 PF13522 Glutamine amidotransferase domain CDO11_19420 PF02674 CDO11_19420 CDO11_19425 PF05036 Sporulation related domain CDO11_19430 PF08245 Mur ligase middle domain CDO11_19440 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_19445 PF10459 Peptidase S46 CDO11_19455 PF00593 TonB dependent receptor CDO11_19455 PF07715 TonB-dependent Receptor Plug Domain CDO11_19465 PF00107 Zinc-binding dehydrogenase CDO11_19465 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_19470 PF09694 CDO11_19470 CDO11_19475 PF00005 ABC transporter CDO11_19475 PF12857 CDO11_19475 CDO11_19480 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_19485 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_19490 PF13531 Bacterial extracellular solute-binding protein CDO11_19495 PF00155 Aminotransferase class I and II CDO11_19505 PF00849 RNA pseudouridylate synthase CDO11_19505 PF01479 S4 domain CDO11_19515 PF00691 OmpA family CDO11_19515 PF13505 Outer membrane protein beta-barrel domain CDO11_19525 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_19525 PF13602 Zinc-binding dehydrogenase CDO11_19530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_19530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_19570 PF00072 Response regulator receiver domain CDO11_19570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19575 PF00072 Response regulator receiver domain CDO11_19580 PF09413 Domain of unknown function (DUF2007) CDO11_19585 PF13409 Glutathione S-transferase, N-terminal domain CDO11_19595 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO11_19595 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDO11_19610 PF13586 CDO11_19610 CDO11_19615 PF13340 CDO11_19615 CDO11_19620 PF13936 Helix-turn-helix domain CDO11_19650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_19655 PF01728 FtsJ-like methyltransferase CDO11_19660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_19665 PF08450 SMP-30/Gluconolaconase/LRE-like region CDO11_19675 PF13202 EF hand CDO11_19680 PF12802 MarR family CDO11_19685 PF00378 Enoyl-CoA hydratase/isomerase family CDO11_19690 PF00171 Aldehyde dehydrogenase family CDO11_19695 PF00501 AMP-binding enzyme CDO11_19695 PF13193 AMP-binding enzyme C-terminal domain CDO11_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_19700 PF03466 LysR substrate binding domain CDO11_19710 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDO11_19725 PF12760 Transposase zinc-ribbon domain CDO11_19725 PF12762 CDO11_19725 CDO11_19740 PF01494 FAD binding domain CDO11_19745 PF01494 FAD binding domain CDO11_19755 PF01923 Cobalamin adenosyltransferase CDO11_19760 PF00850 Histone deacetylase domain CDO11_19765 PF03968 OstA-like protein CDO11_19765 PF04453 Organic solvent tolerance protein CDO11_19770 PF00639 PPIC-type PPIASE domain CDO11_19770 PF09312 SurA N-terminal domain CDO11_19770 PF13616 PPIC-type PPIASE domain CDO11_19775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO11_19785 PF00398 Ribosomal RNA adenine dimethylase CDO11_19790 PF04379 Protein of unknown function (DUF525) CDO11_19795 PF00149 Calcineurin-like phosphoesterase CDO11_19800 PF00186 Dihydrofolate reductase CDO11_19810 PF00303 Thymidylate synthase CDO11_19815 PF01790 CDO11_19815 CDO11_19820 PF04536 TLP18 CDO11_19825 PF04536 TLP18 CDO11_19830 PF04011 LemA family CDO11_19835 PF01219 Prokaryotic diacylglycerol kinase CDO11_19850 PF00512 His Kinase A (phospho-acceptor) domain CDO11_19850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_19855 PF00072 Response regulator receiver domain CDO11_19855 PF00486 Transcriptional regulatory protein, C terminal CDO11_19860 PF13472 GDSL-like Lipase/Acylhydrolase family CDO11_19865 PF00005 ABC transporter CDO11_19870 PF02687 CDO11_19870 CDO11_19875 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDO11_19895 PF04342 CDO11_19895 CDO11_19920 PF10636 Hemin uptake protein hemP CDO11_19925 PF00248 Aldo/keto reductase family CDO11_19935 PF01773 Na+ dependent nucleoside transporter N-terminus CDO11_19935 PF07662 Na+ dependent nucleoside transporter C-terminus CDO11_19935 PF07670 Nucleoside recognition CDO11_19940 PF00294 pfkB family carbohydrate kinase CDO11_19955 PF08306 Glycosyl hydrolase family 98 CDO11_19955 PF08307 Glycosyl hydrolase family 98 C-terminal domain CDO11_19955 PF16990 CDO11_19955 CDO11_19960 PF01207 Dihydrouridine synthase (Dus) CDO11_19975 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDO11_19975 PF02772 S-adenosylmethionine synthetase, central domain CDO11_19975 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDO11_19980 PF13586 CDO11_19980 CDO11_19985 PF13340 CDO11_19985 CDO11_19990 PF00328 Histidine phosphatase superfamily (branch 2) CDO11_19995 PF00593 TonB dependent receptor CDO11_19995 PF07715 TonB-dependent Receptor Plug Domain CDO11_20005 PF13546 CDO11_20005 CDO11_20015 PF00440 Bacterial regulatory proteins, tetR family CDO11_20020 PF00311 Phosphoenolpyruvate carboxylase CDO11_20025 PF00326 Prolyl oligopeptidase family CDO11_20030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDO11_20030 PF05221 S-adenosyl-L-homocysteine hydrolase CDO11_20035 PF13649 Methyltransferase domain CDO11_20040 PF00685 Sulfotransferase domain CDO11_20050 PF11539 Protein of unknown function (DUF3228) CDO11_20055 PF09831 CDO11_20055 CDO11_20070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_20085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_20090 PF00082 Subtilase family CDO11_20095 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_20095 PF13602 Zinc-binding dehydrogenase CDO11_20110 PF02219 Methylenetetrahydrofolate reductase CDO11_20125 PF00293 NUDIX domain CDO11_20125 PF02581 Thiamine monophosphate synthase/TENI CDO11_20135 PF01043 SecA preprotein cross-linking domain CDO11_20135 PF02810 SEC-C motif CDO11_20135 PF07516 SecA Wing and Scaffold domain CDO11_20135 PF07517 SecA DEAD-like domain CDO11_20140 PF01551 Peptidase family M23 CDO11_20145 PF05258 CDO11_20145 CDO11_20150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDO11_20155 PF00091 Tubulin/FtsZ family, GTPase domain CDO11_20155 PF12327 FtsZ family, C-terminal domain CDO11_20160 PF02491 SHS2 domain inserted in FTSA CDO11_20160 PF14450 Cell division protein FtsA CDO11_20165 PF03799 Cell division protein FtsQ CDO11_20165 PF08478 POTRA domain, FtsQ-type CDO11_20170 PF01820 D-ala D-ala ligase N-terminus CDO11_20170 PF07478 D-ala D-ala ligase C-terminus CDO11_20175 PF01225 Mur ligase family, catalytic domain CDO11_20175 PF02875 Mur ligase family, glutamate ligase domain CDO11_20175 PF08245 Mur ligase middle domain CDO11_20180 PF03033 Glycosyltransferase family 28 N-terminal domain CDO11_20180 PF04101 Glycosyltransferase family 28 C-terminal domain CDO11_20185 PF01098 CDO11_20185 CDO11_20190 PF00953 Glycosyl transferase family 4 CDO11_20195 PF01225 Mur ligase family, catalytic domain CDO11_20195 PF02875 Mur ligase family, glutamate ligase domain CDO11_20195 PF08245 Mur ligase middle domain CDO11_20200 PF01225 Mur ligase family, catalytic domain CDO11_20200 PF02875 Mur ligase family, glutamate ligase domain CDO11_20200 PF08245 Mur ligase middle domain CDO11_20205 PF00905 Penicillin binding protein transpeptidase domain CDO11_20205 PF03717 Penicillin-binding Protein dimerisation domain CDO11_20210 PF04999 CDO11_20210 CDO11_20215 PF01795 MraW methylase family CDO11_20220 PF02381 MraZ protein CDO11_20225 PF05742 CDO11_20225 CDO11_20240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO11_20245 PF04348 LppC putative lipoprotein CDO11_20250 PF02021 Uncharacterised protein family UPF0102 CDO11_20255 PF04307 CDO11_20255 CDO11_20260 PF01565 FAD binding domain CDO11_20260 PF02913 FAD linked oxidases, C-terminal domain CDO11_20265 PF00072 Response regulator receiver domain CDO11_20265 PF00486 Transcriptional regulatory protein, C terminal CDO11_20270 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20270 PF00582 Universal stress protein family CDO11_20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20270 PF02702 Osmosensitive K+ channel His kinase sensor domain CDO11_20270 PF13493 Domain of unknown function (DUF4118) CDO11_20275 PF02669 CDO11_20275 CDO11_20280 PF00122 E1-E2 ATPase CDO11_20280 PF00702 haloacid dehalogenase-like hydrolase CDO11_20285 PF03814 CDO11_20285 CDO11_20290 PF09604 CDO11_20290 CDO11_20315 PF00586 AIR synthase related protein, N-terminal domain CDO11_20315 PF02769 AIR synthase related protein, C-terminal domain CDO11_20320 PF01029 NusB family CDO11_20325 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDO11_20330 PF00925 GTP cyclohydrolase II CDO11_20330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDO11_20335 PF00677 Lumazine binding domain CDO11_20345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_20345 PF01872 RibD C-terminal domain CDO11_20350 PF13673 Acetyltransferase (GNAT) domain CDO11_20355 PF03477 ATP cone domain CDO11_20365 PF00464 Serine hydroxymethyltransferase CDO11_20370 PF00593 TonB dependent receptor CDO11_20370 PF07715 TonB-dependent Receptor Plug Domain CDO11_20380 PF11776 Domain of unknown function (DUF3315) CDO11_20385 PF00005 ABC transporter CDO11_20385 PF12848 ABC transporter CDO11_20395 PF14329 CDO11_20395 CDO11_20400 PF14329 CDO11_20400 CDO11_20405 PF00756 Putative esterase CDO11_20415 PF00107 Zinc-binding dehydrogenase CDO11_20415 PF08240 Alcohol dehydrogenase GroES-like domain CDO11_20420 PF02583 Metal-sensitive transcriptional repressor CDO11_20425 PF00534 Glycosyl transferases group 1 CDO11_20430 PF00072 Response regulator receiver domain CDO11_20430 PF00486 Transcriptional regulatory protein, C terminal CDO11_20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20460 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDO11_20460 PF13546 CDO11_20460 CDO11_20470 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDO11_20475 PF01988 CDO11_20475 CDO11_20485 PF01926 50S ribosome-binding GTPase CDO11_20490 PF00034 Cytochrome c CDO11_20495 PF13462 Thioredoxin CDO11_20500 PF01323 DSBA-like thioredoxin domain CDO11_20505 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_20520 PF01609 Transposase DDE domain CDO11_20520 PF05598 CDO11_20520 CDO11_20525 PF00291 Pyridoxal-phosphate dependent enzyme CDO11_20525 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO11_20530 PF13340 CDO11_20530 CDO11_20535 PF13586 CDO11_20535 CDO11_20540 PF01609 Transposase DDE domain CDO11_20540 PF05598 CDO11_20540 CDO11_20550 PF01527 Transposase CDO11_20575 PF01743 Poly A polymerase head domain CDO11_20575 PF01966 HD domain CDO11_20575 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO11_20580 PF12760 Transposase zinc-ribbon domain CDO11_20580 PF12762 CDO11_20580 CDO11_20585 PF13936 Helix-turn-helix domain CDO11_20590 PF01609 Transposase DDE domain CDO11_20590 PF05598 CDO11_20590 CDO11_20600 PF13340 CDO11_20600 CDO11_20605 PF13586 CDO11_20605 CDO11_20620 PF12760 Transposase zinc-ribbon domain CDO11_20620 PF12762 CDO11_20620 CDO11_20630 PF14559 Tetratricopeptide repeat CDO11_20635 PF01522 Polysaccharide deacetylase CDO11_20635 PF14883 Hypothetical glycosyl hydrolase family 13 CDO11_20640 PF13641 Glycosyltransferase like family 2 CDO11_20645 PF13994 CDO11_20645 CDO11_20650 PF01979 Amidohydrolase family CDO11_20655 PF01380 SIS domain CDO11_20660 PF00356 Bacterial regulatory proteins, lacI family CDO11_20660 PF13377 Periplasmic binding protein-like domain CDO11_20665 PF07690 Major Facilitator Superfamily CDO11_20670 PF00392 Bacterial regulatory proteins, gntR family CDO11_20670 PF07702 UTRA domain CDO11_20675 PF07786 CDO11_20675 CDO11_20685 PF00703 Glycosyl hydrolases family 2 CDO11_20685 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CDO11_20685 PF02837 Glycosyl hydrolases family 2, sugar binding domain CDO11_20685 PF16355 CDO11_20685 CDO11_20690 PF00593 TonB dependent receptor CDO11_20690 PF07715 TonB-dependent Receptor Plug Domain CDO11_20695 PF13936 Helix-turn-helix domain CDO11_20705 PF01527 Transposase CDO11_20710 PF01610 CDO11_20710 CDO11_20710 PF13542 CDO11_20710 CDO11_20720 PF13333 CDO11_20720 CDO11_20730 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase CDO11_20735 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_20740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO11_20745 PF00072 Response regulator receiver domain CDO11_20745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20750 PF00072 Response regulator receiver domain CDO11_20755 PF00512 His Kinase A (phospho-acceptor) domain CDO11_20755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_20755 PF05227 CHASE3 domain CDO11_20755 PF13188 PAS domain CDO11_20760 PF04972 BON domain CDO11_20765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO11_20765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO11_20770 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CDO11_20770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_20780 PF05433 CDO11_20780 CDO11_20785 PF10001 CDO11_20785 CDO11_20800 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDO11_20805 PF00293 NUDIX domain CDO11_20805 PF01467 Cytidylyltransferase CDO11_20810 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_20815 PF00595 PDZ domain (Also known as DHR or GLGF) CDO11_20815 PF03572 Peptidase family S41 CDO11_20815 PF11818 CDO11_20815 CDO11_20820 PF06616 BsuBI/PstI restriction endonuclease C-terminus CDO11_20825 PF07669 Eco57I restriction-modification methylase CDO11_20830 PF04055 Radical SAM superfamily CDO11_20830 PF16881 CDO11_20830 CDO11_20835 PF03099 Biotin/lipoate A/B protein ligase family CDO11_20840 PF04359 Protein of unknown function (DUF493) CDO11_20850 PF00768 D-alanyl-D-alanine carboxypeptidase CDO11_20850 PF07943 Penicillin-binding protein 5, C-terminal domain CDO11_20860 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CDO11_20860 PF05036 Sporulation related domain CDO11_20865 PF13406 Transglycosylase SLT domain CDO11_20870 PF00295 Glycosyl hydrolases family 28 CDO11_20880 PF01476 LysM domain CDO11_20880 PF11860 CDO11_20880 CDO11_20890 PF12760 Transposase zinc-ribbon domain CDO11_20890 PF12762 CDO11_20890 CDO11_20895 PF05954 Phage late control gene D protein (GPD) CDO11_20895 PF10106 CDO11_20895 CDO11_20895 PF13296 CDO11_20895 CDO11_20900 PF15584 CDO11_20900 CDO11_20900 PF15602 CDO11_20900 CDO11_20910 PF05954 Phage late control gene D protein (GPD) CDO11_20910 PF10106 CDO11_20910 CDO11_20920 PF01098 CDO11_20920 CDO11_20925 PF00905 Penicillin binding protein transpeptidase domain CDO11_20925 PF03717 Penicillin-binding Protein dimerisation domain CDO11_20930 PF04093 CDO11_20930 CDO11_20935 PF04085 rod shape-determining protein MreC CDO11_20940 PF06723 MreB/Mbl protein CDO11_20945 PF00294 pfkB family carbohydrate kinase CDO11_20950 PF01609 Transposase DDE domain CDO11_20950 PF05598 CDO11_20950 CDO11_20970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO11_20975 PF13673 Acetyltransferase (GNAT) domain CDO11_20985 PF16576 CDO11_20985 CDO11_20995 PF01209 ubiE/COQ5 methyltransferase family CDO11_21000 PF00990 GGDEF domain CDO11_21005 PF01433 Peptidase family M1 CDO11_21005 PF09127 Leukotriene A4 hydrolase, C-terminal CDO11_21015 PF00702 haloacid dehalogenase-like hydrolase CDO11_21020 PF00004 ATPase family associated with various cellular activities (AAA) CDO11_21020 PF07724 AAA domain (Cdc48 subfamily) CDO11_21020 PF10431 C-terminal, D2-small domain, of ClpB protein CDO11_21025 PF00227 Proteasome subunit CDO11_21035 PF00589 Phage integrase family CDO11_21035 PF02899 Phage integrase, N-terminal SAM-like domain CDO11_21040 PF04340 Protein of unknown function, DUF484 CDO11_21045 PF01678 Diaminopimelate epimerase CDO11_21050 PF13627 CDO11_21050 CDO11_21055 PF04304 CDO11_21055 CDO11_21060 PF00326 Prolyl oligopeptidase family CDO11_21060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_21065 PF00155 Aminotransferase class I and II CDO11_21080 PF00326 Prolyl oligopeptidase family CDO11_21080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO11_21090 PF08212 Lipocalin-like domain CDO11_21095 PF08279 HTH domain CDO11_21095 PF13280 CDO11_21095 CDO11_21100 PF04338 Protein of unknown function, DUF481 CDO11_21105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDO11_21105 PF03900 Porphobilinogen deaminase, C-terminal domain CDO11_21110 PF00072 Response regulator receiver domain CDO11_21110 PF04397 LytTr DNA-binding domain CDO11_21115 PF06580 CDO11_21115 CDO11_21120 PF02230 Phospholipase/Carboxylesterase CDO11_21125 PF13632 Glycosyl transferase family group 2 CDO11_21140 PF13340 CDO11_21140 CDO11_21145 PF13586 CDO11_21145 CDO11_21155 PF02225 PA domain CDO11_21155 PF04389 Peptidase family M28 CDO11_21165 PF00916 CDO11_21165 CDO11_21165 PF01740 STAS domain CDO11_21170 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_21170 PF00553 Cellulose binding domain CDO11_21185 PF00990 GGDEF domain CDO11_21185 PF01590 GAF domain CDO11_21185 PF08447 PAS fold CDO11_21185 PF08448 PAS fold CDO11_21190 PF00675 Insulinase (Peptidase family M16) CDO11_21190 PF05193 Peptidase M16 inactive domain CDO11_21195 PF01590 GAF domain CDO11_21205 PF13586 CDO11_21205 CDO11_21210 PF13340 CDO11_21210 CDO11_21220 PF01904 Protein of unknown function DUF72 CDO11_21230 PF01204 Trehalase CDO11_21235 PF01382 Avidin family CDO11_21245 PF01987 Mitochondrial biogenesis AIM24 CDO11_21250 PF01544 CorA-like Mg2+ transporter protein CDO11_21260 PF00324 Amino acid permease CDO11_21270 PF01341 Glycosyl hydrolases family 6 CDO11_21275 PF00150 Cellulase (glycosyl hydrolase family 5) CDO11_21280 PF00892 EamA-like transporter family CDO11_21285 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDO11_21300 PF07759 CDO11_21300 CDO11_21310 PF00326 Prolyl oligopeptidase family CDO11_21310 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_21320 PF00326 Prolyl oligopeptidase family CDO11_21340 PF00106 short chain dehydrogenase CDO11_21340 PF13561 Enoyl-(Acyl carrier protein) reductase CDO11_21355 PF01212 Beta-eliminating lyase CDO11_21360 PF00425 chorismate binding enzyme CDO11_21360 PF04715 Anthranilate synthase component I, N terminal region CDO11_21365 PF00781 Diacylglycerol kinase catalytic domain CDO11_21370 PF00583 Acetyltransferase (GNAT) family CDO11_21375 PF00834 Ribulose-phosphate 3 epimerase family CDO11_21380 PF00226 DnaJ domain CDO11_21385 PF01259 SAICAR synthetase CDO11_21390 PF01936 NYN domain CDO11_21400 PF07504 Fungalysin/Thermolysin Propeptide Motif CDO11_21405 PF01447 Thermolysin metallopeptidase, catalytic domain CDO11_21405 PF02868 Thermolysin metallopeptidase, alpha-helical domain CDO11_21410 PF02868 Thermolysin metallopeptidase, alpha-helical domain CDO11_21415 PF06127 CDO11_21415 CDO11_21425 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_21425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO11_21425 PF04039 CDO11_21425 CDO11_21425 PF13244 CDO11_21425 CDO11_21430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO11_21435 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CDO11_21440 PF01899 CDO11_21440 CDO11_21445 PF04066 CDO11_21445 CDO11_21450 PF03334 CDO11_21450 CDO11_21460 PF01609 Transposase DDE domain CDO11_21460 PF05598 CDO11_21460 CDO11_21470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO11_21470 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal CDO11_21475 PF12802 MarR family CDO11_21480 PF13899 Thioredoxin-like CDO11_21485 PF00854 POT family CDO11_21490 PF03301 Tryptophan 2,3-dioxygenase CDO11_21500 PF00676 Dehydrogenase E1 component CDO11_21510 PF12760 Transposase zinc-ribbon domain CDO11_21510 PF12762 CDO11_21510 CDO11_21520 PF07653 Variant SH3 domain CDO11_21530 PF00108 Thiolase, N-terminal domain CDO11_21530 PF02803 Thiolase, C-terminal domain CDO11_21540 PF07219 CDO11_21540 CDO11_21545 PF04375 CDO11_21545 CDO11_21550 PF02602 Uroporphyrinogen-III synthase HemD CDO11_21555 PF01755 CDO11_21555 CDO11_21575 PF13546 CDO11_21575 CDO11_21580 PF01609 Transposase DDE domain CDO11_21580 PF05598 CDO11_21580 CDO11_21585 PF13419 Haloacid dehalogenase-like hydrolase CDO11_21590 PF13202 EF hand CDO11_21595 PF13202 EF hand CDO11_21605 PF14255 CDO11_21605 CDO11_21610 PF01427 D-ala-D-ala dipeptidase CDO11_21615 PF01510 N-acetylmuramoyl-L-alanine amidase CDO11_21620 PF00877 NlpC/P60 family CDO11_21620 PF12913 SH3 domain of the SH3b1 type CDO11_21620 PF12914 SH3 domain of SH3b2 type CDO11_21625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_21625 PF13378 Enolase C-terminal domain-like CDO11_21645 PF12760 Transposase zinc-ribbon domain CDO11_21645 PF12762 CDO11_21645 CDO11_21655 PF13586 CDO11_21655 CDO11_21660 PF13340 CDO11_21660 CDO11_21670 PF13520 Amino acid permease CDO11_21675 PF13586 CDO11_21675 CDO11_21680 PF01610 CDO11_21680 CDO11_21680 PF13542 CDO11_21680 CDO11_21685 PF13340 CDO11_21685 CDO11_21705 PF05360 CDO11_21705 CDO11_21710 PF01609 Transposase DDE domain CDO11_21710 PF05598 CDO11_21710 CDO11_21715 PF07995 Glucose / Sorbosone dehydrogenase CDO11_21730 PF12760 Transposase zinc-ribbon domain CDO11_21730 PF12762 CDO11_21730 CDO11_21750 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_21750 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_21750 PF14310 Fibronectin type III-like domain CDO11_21755 PF02152 Dihydroneopterin aldolase CDO11_21760 PF00814 Glycoprotease family CDO11_21765 PF01165 Ribosomal protein S21 CDO11_21770 PF09424 Yqey-like protein CDO11_21780 PF03631 CDO11_21780 CDO11_21785 PF01807 CHC2 zinc finger CDO11_21785 PF08275 DNA primase catalytic core, N-terminal domain CDO11_21785 PF08278 DNA primase DnaG DnaB-binding CDO11_21785 PF10410 DnaB-helicase binding domain of primase CDO11_21785 PF13155 Toprim-like CDO11_21800 PF13593 SBF-like CPA transporter family (DUF4137) CDO11_21805 PF13899 Thioredoxin-like CDO11_21815 PF01040 UbiA prenyltransferase family CDO11_21820 PF02628 CDO11_21820 CDO11_21830 PF02104 CDO11_21830 CDO11_21835 PF11137 CDO11_21835 CDO11_21840 PF00510 Cytochrome c oxidase subunit III CDO11_21845 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDO11_21855 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO11_21860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO11_21860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDO11_21865 PF10003 CDO11_21865 CDO11_21870 PF00171 Aldehyde dehydrogenase family CDO11_21870 PF01619 Proline dehydrogenase CDO11_21870 PF14850 DNA-binding domain of Proline dehydrogenase CDO11_21880 PF12760 Transposase zinc-ribbon domain CDO11_21880 PF12762 CDO11_21880 CDO11_21885 PF00210 Ferritin-like domain CDO11_21890 PF04324 BFD-like [2Fe-2S] binding domain CDO11_21895 PF00293 NUDIX domain CDO11_21910 PF00380 Ribosomal protein S9/S16 CDO11_21915 PF00572 Ribosomal protein L13 CDO11_21920 PF03232 CDO11_21920 CDO11_21925 PF00893 Small Multidrug Resistance protein CDO11_21930 PF02675 S-adenosylmethionine decarboxylase CDO11_21935 PF00027 Cyclic nucleotide-binding domain CDO11_21935 PF00325 Bacterial regulatory proteins, crp family CDO11_21940 PF12710 haloacid dehalogenase-like hydrolase CDO11_21945 PF00218 Indole-3-glycerol phosphate synthase CDO11_21950 PF00591 Glycosyl transferase family, a/b domain CDO11_21950 PF02885 Glycosyl transferase family, helical bundle domain CDO11_21955 PF01613 Flavin reductase like domain CDO11_21965 PF00117 Glutamine amidotransferase class-I CDO11_21970 PF07916 CDO11_21970 CDO11_21980 PF03466 LysR substrate binding domain CDO11_21990 PF03971 Monomeric isocitrate dehydrogenase CDO11_22000 PF01609 Transposase DDE domain CDO11_22000 PF05598 CDO11_22000 CDO11_22025 PF01609 Transposase DDE domain CDO11_22025 PF05598 CDO11_22025 CDO11_22030 PF00665 Integrase core domain CDO11_22030 PF13936 Helix-turn-helix domain CDO11_22035 PF00872 CDO11_22035 CDO11_22045 PF14489 QueF-like protein CDO11_22045 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDO11_22055 PF01546 Peptidase family M20/M25/M40 CDO11_22055 PF07687 Peptidase dimerisation domain CDO11_22060 PF16576 CDO11_22060 CDO11_22065 PF00873 AcrB/AcrD/AcrF family CDO11_22070 PF00873 AcrB/AcrD/AcrF family CDO11_22080 PF07063 Domain of unknown function (DUF1338) CDO11_22095 PF12760 Transposase zinc-ribbon domain CDO11_22095 PF12762 CDO11_22095 CDO11_22105 PF12760 Transposase zinc-ribbon domain CDO11_22105 PF12762 CDO11_22105 CDO11_22110 PF09500 Putative thioesterase (yiiD_Cterm) CDO11_22120 PF00581 Rhodanese-like domain CDO11_22125 PF02556 Preprotein translocase subunit SecB CDO11_22130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDO11_22130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDO11_22140 PF00205 Thiamine pyrophosphate enzyme, central domain CDO11_22140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO11_22140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO11_22145 PF00512 His Kinase A (phospho-acceptor) domain CDO11_22145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_22150 PF00072 Response regulator receiver domain CDO11_22150 PF00158 Sigma-54 interaction domain CDO11_22150 PF02954 Bacterial regulatory protein, Fis family CDO11_22165 PF07690 Major Facilitator Superfamily CDO11_22170 PF00588 SpoU rRNA Methylase family CDO11_22180 PF13698 CDO11_22180 CDO11_22185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO11_22185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO11_22190 PF02661 Fic/DOC family CDO11_22190 PF13784 Fic/DOC family N-terminal CDO11_22195 PF01555 DNA methylase CDO11_22200 PF04851 Type III restriction enzyme, res subunit CDO11_22205 PF00561 alpha/beta hydrolase fold CDO11_22210 PF03692 CDO11_22210 CDO11_22215 PF00501 AMP-binding enzyme CDO11_22220 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CDO11_22225 PF07043 CDO11_22225 CDO11_22230 PF01609 Transposase DDE domain CDO11_22230 PF05598 CDO11_22230 CDO11_22235 PF12802 MarR family CDO11_22245 PF11871 CDO11_22245 CDO11_22245 PF13487 HD domain CDO11_22250 PF07690 Major Facilitator Superfamily CDO11_22255 PF13340 CDO11_22255 CDO11_22265 PF13586 CDO11_22265 CDO11_22270 PF13358 DDE superfamily endonuclease CDO11_22270 PF13551 Winged helix-turn helix CDO11_22270 PF13592 CDO11_22270 CDO11_22275 PF00132 Bacterial transferase hexapeptide (six repeats) CDO11_22285 PF00920 Dehydratase family CDO11_22290 PF00589 Phage integrase family CDO11_22290 PF13495 Phage integrase, N-terminal SAM-like domain CDO11_22300 PF01610 CDO11_22300 CDO11_22300 PF13542 CDO11_22300 CDO11_22325 PF01218 Coproporphyrinogen III oxidase CDO11_22340 PF00476 DNA polymerase family A CDO11_22340 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO11_22340 PF01612 3'-5' exonuclease CDO11_22340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO11_22345 PF11191 Protein of unknown function (DUF2782) CDO11_22365 PF00456 Transketolase, thiamine diphosphate binding domain CDO11_22380 PF01609 Transposase DDE domain CDO11_22380 PF05598 CDO11_22380 CDO11_22400 PF13276 CDO11_22400 CDO11_22415 PF00672 HAMP domain CDO11_22415 PF02743 Cache domain CDO11_22415 PF07228 Stage II sporulation protein E (SpoIIE) CDO11_22420 PF13581 Histidine kinase-like ATPase domain CDO11_22425 PF13466 STAS domain CDO11_22435 PF04264 YceI-like domain CDO11_22440 PF00881 Nitroreductase family CDO11_22445 PF06258 CDO11_22445 CDO11_22465 PF02592 CDO11_22465 CDO11_22470 PF03710 Glutamate-ammonia ligase adenylyltransferase CDO11_22470 PF08335 GlnD PII-uridylyltransferase CDO11_22480 PF08450 SMP-30/Gluconolaconase/LRE-like region CDO11_22505 PF12760 Transposase zinc-ribbon domain CDO11_22505 PF12762 CDO11_22505 CDO11_22520 PF00793 DAHP synthetase I family CDO11_22530 PF00593 TonB dependent receptor CDO11_22535 PF07715 TonB-dependent Receptor Plug Domain CDO11_22545 PF00118 TCP-1/cpn60 chaperonin family CDO11_22550 PF00166 Chaperonin 10 Kd subunit CDO11_22560 PF01936 NYN domain CDO11_22560 PF12872 OST-HTH/LOTUS domain CDO11_22570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO11_22580 PF00140 Sigma-70 factor, region 1 CDO11_22580 PF04542 Sigma-70 region 2 CDO11_22580 PF04545 Sigma-70, region 4 CDO11_22585 PF03167 Uracil DNA glycosylase superfamily CDO11_22590 PF00072 Response regulator receiver domain CDO11_22600 PF00005 ABC transporter CDO11_22605 PF00270 DEAD/DEAH box helicase CDO11_22605 PF00271 Helicase conserved C-terminal domain CDO11_22605 PF12300 CDO11_22605 CDO11_22610 PF00085 Thioredoxin CDO11_22615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO11_22615 PF07497 Rho termination factor, RNA-binding domain CDO11_22615 PF07498 Rho termination factor, N-terminal domain CDO11_22625 PF01103 Surface antigen CDO11_22625 PF07244 Surface antigen variable number repeat CDO11_22625 PF17243 CDO11_22625 CDO11_22630 PF04357 CDO11_22630 CDO11_22650 PF03176 MMPL family CDO11_22660 PF03279 CDO11_22660 CDO11_22665 PF07977 FabA-like domain CDO11_22670 PF01553 Acyltransferase CDO11_22680 PF00550 Phosphopantetheine attachment site CDO11_22685 PF01494 FAD binding domain CDO11_22695 PF06189 CDO11_22695 CDO11_22705 PF00501 AMP-binding enzyme CDO11_22710 PF00326 Prolyl oligopeptidase family CDO11_22710 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CDO11_22735 PF04191 Phospholipid methyltransferase CDO11_22740 PF01638 HxlR-like helix-turn-helix CDO11_22745 PF05368 NmrA-like family CDO11_22755 PF03812 CDO11_22755 CDO11_22760 PF01717 Cobalamin-independent synthase, Catalytic domain CDO11_22765 PF08908 CDO11_22765 CDO11_22770 PF03358 NADPH-dependent FMN reductase CDO11_22775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_22775 PF03466 LysR substrate binding domain CDO11_22780 PF02677 CDO11_22780 CDO11_22790 PF02219 Methylenetetrahydrofolate reductase CDO11_22795 PF00512 His Kinase A (phospho-acceptor) domain CDO11_22800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_22805 PF00072 Response regulator receiver domain CDO11_22805 PF00486 Transcriptional regulatory protein, C terminal CDO11_22810 PF00551 Formyl transferase CDO11_22810 PF01842 ACT domain CDO11_22830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO11_22830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO11_22835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO11_22840 PF02146 Sir2 family CDO11_22850 PF07690 Major Facilitator Superfamily CDO11_22855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_22855 PF03466 LysR substrate binding domain CDO11_22875 PF01026 TatD related DNase CDO11_22890 PF00326 Prolyl oligopeptidase family CDO11_22895 PF00561 alpha/beta hydrolase fold CDO11_22900 PF12760 Transposase zinc-ribbon domain CDO11_22900 PF12762 CDO11_22900 CDO11_22910 PF13340 CDO11_22910 CDO11_22915 PF13586 CDO11_22915 CDO11_22920 PF13358 DDE superfamily endonuclease CDO11_22920 PF13551 Winged helix-turn helix CDO11_22920 PF13592 CDO11_22920 CDO11_22930 PF00266 Aminotransferase class-V CDO11_22935 PF01522 Polysaccharide deacetylase CDO11_22940 PF11533 Protein of unknown function (DUF3225) CDO11_22945 PF09349 OHCU decarboxylase CDO11_22975 PF01609 Transposase DDE domain CDO11_22990 PF00326 Prolyl oligopeptidase family CDO11_22995 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CDO11_22995 PF00364 Biotin-requiring enzyme CDO11_22995 PF02785 Biotin carboxylase C-terminal domain CDO11_22995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO11_23000 PF01039 Carboxyl transferase domain CDO11_23005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO11_23005 PF02770 Acyl-CoA dehydrogenase, middle domain CDO11_23005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO11_23010 PF00440 Bacterial regulatory proteins, tetR family CDO11_23025 PF11804 CDO11_23025 CDO11_23035 PF12365 CDO11_23035 CDO11_23045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO11_23055 PF03203 CDO11_23055 CDO11_23060 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO11_23060 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO11_23075 PF12146 Putative lysophospholipase CDO11_23080 PF03969 AFG1-like ATPase CDO11_23100 PF13469 Sulfotransferase family CDO11_23105 PF02092 CDO11_23105 CDO11_23105 PF05746 DALR anticodon binding domain CDO11_23110 PF02091 Glycyl-tRNA synthetase alpha subunit CDO11_23115 PF00437 Type II/IV secretion system protein CDO11_23115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDO11_23130 PF13546 CDO11_23130 CDO11_23140 PF00117 Glutamine amidotransferase class-I CDO11_23150 PF00902 Sec-independent protein translocase protein (TatC) CDO11_23155 PF02416 mttA/Hcf106 family CDO11_23160 PF02416 mttA/Hcf106 family CDO11_23165 PF04366 CDO11_23165 CDO11_23170 PF00762 Ferrochelatase CDO11_23175 PF00561 alpha/beta hydrolase fold CDO11_23190 PF01863 Protein of unknown function DUF45 CDO11_23200 PF04381 Putative exonuclease, RdgC CDO11_23205 PF01171 PP-loop family CDO11_23220 PF00356 Bacterial regulatory proteins, lacI family CDO11_23220 PF13377 Periplasmic binding protein-like domain CDO11_23225 PF03648 Glycosyl hydrolase family 67 N-terminus CDO11_23225 PF07477 Glycosyl hydrolase family 67 C-terminus CDO11_23225 PF07488 Glycosyl hydrolase family 67 middle domain CDO11_23230 PF02837 Glycosyl hydrolases family 2, sugar binding domain CDO11_23230 PF03629 Domain of unknown function (DUF303) CDO11_23235 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_23235 PF13378 Enolase C-terminal domain-like CDO11_23240 PF04616 Glycosyl hydrolases family 43 CDO11_23245 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO11_23245 PF01915 Glycosyl hydrolase family 3 C-terminal domain CDO11_23245 PF07691 PA14 domain CDO11_23245 PF14310 Fibronectin type III-like domain CDO11_23250 PF01232 Mannitol dehydrogenase Rossmann domain CDO11_23250 PF08125 Mannitol dehydrogenase C-terminal domain CDO11_23270 PF02614 Glucuronate isomerase CDO11_23275 PF00331 Glycosyl hydrolase family 10 CDO11_23290 PF07690 Major Facilitator Superfamily CDO11_23295 PF00593 TonB dependent receptor CDO11_23295 PF07715 TonB-dependent Receptor Plug Domain CDO11_23300 PF13347 MFS/sugar transport protein CDO11_23305 PF04616 Glycosyl hydrolases family 43 CDO11_23330 PF12760 Transposase zinc-ribbon domain CDO11_23330 PF12762 CDO11_23330 CDO11_23335 PF12792 CDO11_23335 CDO11_23340 PF13340 CDO11_23340 CDO11_23345 PF13586 CDO11_23345 CDO11_23350 PF00563 EAL domain CDO11_23355 PF00487 CDO11_23355 CDO11_23360 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO11_23360 PF00175 Oxidoreductase NAD-binding domain CDO11_23360 PF00970 Oxidoreductase FAD-binding domain CDO11_23365 PF00440 Bacterial regulatory proteins, tetR family CDO11_23375 PF13546 CDO11_23375 CDO11_23380 PF00665 Integrase core domain CDO11_23380 PF13936 Helix-turn-helix domain CDO11_23395 PF01047 MarR family CDO11_23400 PF02566 OsmC-like protein CDO11_23405 PF11101 CDO11_23405 CDO11_23435 PF13560 Helix-turn-helix domain CDO11_23440 PF15579 CDO11_23440 CDO11_23445 PF15648 CDO11_23445 CDO11_23460 PF05488 PAAR motif CDO11_23485 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO11_23495 PF01381 Helix-turn-helix CDO11_23500 PF05015 Plasmid maintenance system killer protein CDO11_23505 PF13245 Part of AAA domain CDO11_23505 PF13538 UvrD-like helicase C-terminal domain CDO11_23510 PF00580 UvrD/REP helicase N-terminal domain CDO11_23510 PF12705 PD-(D/E)XK nuclease superfamily CDO11_23510 PF13361 UvrD-like helicase C-terminal domain CDO11_23515 PF04257 Exodeoxyribonuclease V, gamma subunit CDO11_23520 PF13476 AAA domain CDO11_23535 PF07484 Phage Tail Collar Domain CDO11_23540 PF07484 Phage Tail Collar Domain CDO11_23545 PF07484 Phage Tail Collar Domain CDO11_23550 PF12760 Transposase zinc-ribbon domain CDO11_23550 PF12762 CDO11_23550 CDO11_23555 PF13358 DDE superfamily endonuclease CDO11_23560 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_23565 PF00080 Copper/zinc superoxide dismutase (SODC) CDO11_23570 PF00072 Response regulator receiver domain CDO11_23570 PF00158 Sigma-54 interaction domain CDO11_23570 PF02954 Bacterial regulatory protein, Fis family CDO11_23575 PF00512 His Kinase A (phospho-acceptor) domain CDO11_23575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO11_23580 PF00909 Ammonium Transporter Family CDO11_23585 PF00543 Nitrogen regulatory protein P-II CDO11_23590 PF00120 Glutamine synthetase, catalytic domain CDO11_23590 PF03951 Glutamine synthetase, beta-Grasp domain CDO11_23595 PF02673 CDO11_23595 CDO11_23600 PF03724 META domain CDO11_23600 PF14302 CDO11_23600 CDO11_23610 PF01161 Phosphatidylethanolamine-binding protein CDO11_23615 PF13432 Tetratricopeptide repeat CDO11_23625 PF12697 Alpha/beta hydrolase family CDO11_23630 PF01553 Acyltransferase CDO11_23635 PF03061 Thioesterase superfamily CDO11_23640 PF13091 PLD-like domain CDO11_23645 PF04264 YceI-like domain CDO11_23650 PF00300 Histidine phosphatase superfamily (branch 1) CDO11_23655 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO11_23660 PF03547 CDO11_23660 CDO11_23670 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDO11_23675 PF13560 Helix-turn-helix domain CDO11_23680 PF07804 HipA-like C-terminal domain CDO11_23680 PF13657 HipA N-terminal domain CDO11_23685 PF10017 CDO11_23685 CDO11_23690 PF03781 Sulfatase-modifying factor enzyme 1 CDO11_23690 PF12867 DinB superfamily CDO11_23695 PF00266 Aminotransferase class-V CDO11_23700 PF00528 Binding-protein-dependent transport system inner membrane component CDO11_23700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDO11_23705 PF00005 ABC transporter CDO11_23710 PF13202 EF hand CDO11_23715 PF00487 CDO11_23715 CDO11_23720 PF00005 ABC transporter CDO11_23730 PF01734 Patatin-like phospholipase CDO11_23745 PF01609 Transposase DDE domain CDO11_23745 PF05598 CDO11_23745 CDO11_23765 PF00248 Aldo/keto reductase family CDO11_23770 PF00107 Zinc-binding dehydrogenase CDO11_23770 PF16884 CDO11_23770 CDO11_23775 PF00248 Aldo/keto reductase family CDO11_23785 PF00849 RNA pseudouridylate synthase CDO11_23800 PF00271 Helicase conserved C-terminal domain CDO11_23800 PF04408 Helicase associated domain (HA2) CDO11_23800 PF08482 CDO11_23800 CDO11_23805 PF07308 CDO11_23805 CDO11_23810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO11_23810 PF13378 Enolase C-terminal domain-like CDO11_23820 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO11_23830 PF04909 Amidohydrolase CDO11_23835 PF00248 Aldo/keto reductase family CDO11_23845 PF04616 Glycosyl hydrolases family 43 CDO11_23870 PF00072 Response regulator receiver domain CDO11_23870 PF00196 Bacterial regulatory proteins, luxR family CDO11_23875 PF00501 AMP-binding enzyme CDO11_23875 PF13193 AMP-binding enzyme C-terminal domain CDO11_23875 PF16177 CDO11_23875 CDO11_23890 PF04341 CDO11_23890 CDO11_23895 PF00474 Sodium:solute symporter family CDO11_23910 PF03372 Endonuclease/Exonuclease/phosphatase family CDO11_23915 PF04828 Glutathione-dependent formaldehyde-activating enzyme CDO11_23920 PF04226 CDO11_23920 CDO11_23925 PF01648 4'-phosphopantetheinyl transferase superfamily CDO11_23930 PF09423 PhoD-like phosphatase CDO11_23930 PF16655 CDO11_23930 CDO11_23935 PF09423 PhoD-like phosphatase CDO11_23935 PF16655 CDO11_23935 CDO11_23940 PF02527 rRNA small subunit methyltransferase G CDO11_23955 PF00830 Ribosomal L28 family CDO11_23960 PF00471 Ribosomal protein L33 CDO11_23965 PF04909 Amidohydrolase CDO11_23970 PF01610 CDO11_23970 CDO11_23970 PF13542 CDO11_23970 CDO11_23975 PF04909 Amidohydrolase CDO11_23985 PF04303 PrpF protein CDO11_23990 PF03737 Demethylmenaquinone methyltransferase CDO11_23995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO11_23995 PF03466 LysR substrate binding domain CDO11_24000 PF13091 PLD-like domain CDO11_24000 PF13396 CDO11_24000 CDO11_24010 PF13454 FAD-NAD(P)-binding CDO11_24015 PF00580 UvrD/REP helicase N-terminal domain CDO11_24015 PF13361 UvrD-like helicase C-terminal domain CDO11_24025 PF12760 Transposase zinc-ribbon domain CDO11_24025 PF12762 CDO11_24025 CDO11_24030 PF13520 Amino acid permease CDO11_24040 PF02646 CDO11_24040 CDO11_24040 PF13602 Zinc-binding dehydrogenase CDO11_24050 PF00255 Glutathione peroxidase CDO11_24065 PF04055 Radical SAM superfamily CDO11_24075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDO11_24080 PF01694 Rhomboid family CDO11_24085 PF08850 CDO11_24085 CDO11_24090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO11_24090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO11_24100 PF03572 Peptidase family S41 CDO11_24100 PF13180 PDZ domain CDO11_24105 PF01551 Peptidase family M23 CDO11_24115 PF02225 PA domain CDO11_24115 PF04389 Peptidase family M28 CDO11_24120 PF13670 CDO11_24120 CDO11_24125 PF13546 CDO11_24125 CDO11_24135 PF09983 CDO11_24135 CDO11_24135 PF11795 CDO11_24135 CDO11_24140 PF13555 P-loop containing region of AAA domain CDO11_24140 PF13558 Putative exonuclease SbcCD, C subunit CDO11_24145 PF13835 CDO11_24145 CDO11_24150 PF11855 CDO11_24150 CDO11_24155 PF14103 CDO11_24155 CDO11_24160 PF13304 AAA domain CDO11_24165 PF01227 GTP cyclohydrolase I CDO11_24170 PF12802 MarR family CDO11_24175 PF07869 CDO11_24175 CDO11_24180 PF02321 Outer membrane efflux protein CDO11_24185 PF04632 CDO11_24185 CDO11_24190 PF00083 Sugar (and other) transporter CDO11_24195 PF13376 CDO11_24195 CDO11_24210 PF05016 Plasmid stabilisation system protein CDO11_24230 PF15579 CDO11_24230 CDO11_24235 PF15648 CDO11_24235 CDO11_24245 PF13503 CDO11_24245 CDO11_24250 PF05488 PAAR motif CDO11_24280 PF02595 Glycerate kinase family CDO11_24285 PF07690 Major Facilitator Superfamily CDO11_24300 PF10672 S-adenosylmethionine-dependent methyltransferase CDO11_24310 PF03741 CDO11_24310 CDO11_24315 PF01694 Rhomboid family CDO11_24320 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO11_24330 PF01569 PAP2 superfamily CDO11_24335 PF01926 50S ribosome-binding GTPase CDO11_24335 PF10396 GTP-binding protein TrmE N-terminus CDO11_24335 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CDO11_24340 PF00656 Caspase domain CDO11_24340 PF01522 Polysaccharide deacetylase CDO11_24340 PF13432 Tetratricopeptide repeat CDO11_24345 PF02096 60Kd inner membrane protein CDO11_24345 PF14849 YidC periplasmic domain CDO11_24350 PF00825 Ribonuclease P CDO11_24355 PF00468 Ribosomal protein L34