CDO11_00005 SM00382 ATPases associated with a variety of cellular activities CDO11_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CDO11_00010 SM00480 DNA polymerase III beta subunit CDO11_00020 SM00387 Histidine kinase-like ATPases CDO11_00020 SM00433 TopoisomeraseII CDO11_00035 SM00028 Tetratricopeptide repeats CDO11_00070 SM00155 Phospholipase D. Active site motifs. CDO11_00165 SM00382 ATPases associated with a variety of cellular activities CDO11_00225 SM00487 DEAD-like helicases superfamily CDO11_00225 SM00490 helicase superfamily c-terminal domain CDO11_00290 SM01126 CDO11_00290 CDO11_00320 SM00642 Alpha-amylase domain CDO11_00330 SM00642 Alpha-amylase domain CDO11_00340 SM00642 Alpha-amylase domain CDO11_00345 SM00642 Alpha-amylase domain CDO11_00355 SM00267 diguanylate cyclase CDO11_00450 SM00382 ATPases associated with a variety of cellular activities CDO11_00585 SM00369 Leucine-rich repeats, typical (most populated) subfamily CDO11_00610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_00725 SM00382 ATPases associated with a variety of cellular activities CDO11_00775 SM00487 DEAD-like helicases superfamily CDO11_00775 SM00490 helicase superfamily c-terminal domain CDO11_00865 SM01126 CDO11_00865 CDO11_00900 SM00354 helix_turn _helix lactose operon repressor CDO11_00930 SM00642 Alpha-amylase domain CDO11_00935 SM00642 Alpha-amylase domain CDO11_00940 SM00642 Alpha-amylase domain CDO11_00990 SM00382 ATPases associated with a variety of cellular activities CDO11_01000 SM00938 Nitrogen regulatory protein P-II CDO11_01090 SM01228 CDO11_01090 CDO11_01160 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_01160 SM00388 His Kinase A (phosphoacceptor) domain CDO11_01195 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO11_01215 SM00354 helix_turn _helix lactose operon repressor CDO11_01230 SM00563 Phosphate acyltransferases CDO11_01275 SM00344 helix_turn_helix ASNC type CDO11_01320 SM00829 Enoylreductase CDO11_01395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_01395 SM00091 PAS domain CDO11_01445 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO11_01445 SM01232 CDO11_01445 CDO11_01450 SM01126 CDO11_01450 CDO11_01495 SM00382 ATPases associated with a variety of cellular activities CDO11_01510 SM01126 CDO11_01510 CDO11_01580 SM00564 beta-propeller repeat CDO11_01625 SM00091 PAS domain CDO11_01625 SM00387 Histidine kinase-like ATPases CDO11_01625 SM00388 His Kinase A (phosphoacceptor) domain CDO11_01625 SM00448 cheY-homologous receiver domain CDO11_01635 SM00346 helix_turn_helix isocitrate lyase regulation CDO11_01655 SM01126 CDO11_01655 CDO11_01680 SM00563 Phosphate acyltransferases CDO11_01780 SM01126 CDO11_01780 CDO11_01825 SM00382 ATPases associated with a variety of cellular activities CDO11_01850 SM00530 Helix-turn-helix XRE-family like proteins CDO11_01860 SM00382 ATPases associated with a variety of cellular activities CDO11_01880 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CDO11_01925 SM01004 Delta-aminolevulinic acid dehydratase CDO11_01955 SM00477 DNA/RNA non-specific endonuclease CDO11_01955 SM00892 DNA/RNA non-specific endonuclease CDO11_01985 SM00491 CDO11_01985 CDO11_02005 SM01126 CDO11_02005 CDO11_02020 SM01060 CDO11_02020 CDO11_02025 SM00248 ankyrin repeats CDO11_02055 SM00448 cheY-homologous receiver domain CDO11_02055 SM00862 Transcriptional regulatory protein, C terminal CDO11_02060 SM00387 Histidine kinase-like ATPases CDO11_02060 SM00388 His Kinase A (phosphoacceptor) domain CDO11_02155 SM00849 Metallo-beta-lactamase superfamily CDO11_02205 SM01060 CDO11_02205 CDO11_02255 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_02255 SM00876 Biotin and Thiamin Synthesis associated domain CDO11_02275 SM00822 CDO11_02275 CDO11_02300 SM00825 Beta-ketoacyl synthase CDO11_02310 SM00248 ankyrin repeats CDO11_02315 SM00226 Low molecular weight phosphatase family CDO11_02340 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_02340 SM00924 MgtE intracellular N domain CDO11_02350 SM00881 CoA binding domain CDO11_02420 SM00998 Adenylosuccinate lyase C-terminus CDO11_02445 SM00090 RIO-like kinase CDO11_02470 SM00836 DALR anticodon binding domain CDO11_02470 SM01016 Arginyl tRNA synthetase N terminal dom CDO11_02500 SM01259 CDO11_02500 CDO11_02520 SM00470 ParB-like nuclease domain CDO11_02600 SM00073 Histidine Phosphotransfer domain CDO11_02600 SM00387 Histidine kinase-like ATPases CDO11_02600 SM00388 His Kinase A (phosphoacceptor) domain CDO11_02600 SM00448 cheY-homologous receiver domain CDO11_02605 SM00052 Putative diguanylate phosphodiesterase CDO11_02605 SM00267 diguanylate cyclase CDO11_02605 SM00448 cheY-homologous receiver domain CDO11_02675 SM00563 Phosphate acyltransferases CDO11_02705 SM01209 CDO11_02705 CDO11_02705 SM01210 CDO11_02705 CDO11_02720 SM00798 AICARFT/IMPCHase bienzyme CDO11_02720 SM00851 MGS-like domain CDO11_02755 SM01126 CDO11_02755 CDO11_02780 SM00530 Helix-turn-helix XRE-family like proteins CDO11_02815 SM00878 Biotin carboxylase C-terminal domain CDO11_02850 SM01126 CDO11_02850 CDO11_02875 SM00487 DEAD-like helicases superfamily CDO11_02875 SM00490 helicase superfamily c-terminal domain CDO11_02935 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CDO11_02935 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CDO11_02935 SM00493 CDO11_02935 CDO11_02960 SM00257 Lysin motif CDO11_03195 SM00382 ATPases associated with a variety of cellular activities CDO11_03285 SM00382 ATPases associated with a variety of cellular activities CDO11_03285 SM00448 cheY-homologous receiver domain CDO11_03295 SM00448 cheY-homologous receiver domain CDO11_03300 SM00138 Methyltransferase, chemotaxis proteins CDO11_03320 SM00387 Histidine kinase-like ATPases CDO11_03390 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_03395 SM00986 Uracil DNA glycosylase superfamily CDO11_03395 SM00987 UreE urease accessory protein, C-terminal domain CDO11_03405 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CDO11_03425 SM00382 ATPases associated with a variety of cellular activities CDO11_03455 SM00387 Histidine kinase-like ATPases CDO11_03455 SM00388 His Kinase A (phosphoacceptor) domain CDO11_03460 SM00448 cheY-homologous receiver domain CDO11_03460 SM00862 Transcriptional regulatory protein, C terminal CDO11_03505 SM00344 helix_turn_helix ASNC type CDO11_03515 SM01005 Alanine racemase, C-terminal domain CDO11_03535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_03535 SM00091 PAS domain CDO11_03535 SM00387 Histidine kinase-like ATPases CDO11_03535 SM00388 His Kinase A (phosphoacceptor) domain CDO11_03535 SM00448 cheY-homologous receiver domain CDO11_03620 SM00382 ATPases associated with a variety of cellular activities CDO11_03620 SM00930 CDO11_03620 CDO11_03645 SM00986 Uracil DNA glycosylase superfamily CDO11_03645 SM00987 UreE urease accessory protein, C-terminal domain CDO11_03715 SM00382 ATPases associated with a variety of cellular activities CDO11_03725 SM00830 Chorismate mutase type II CDO11_03755 SM01126 CDO11_03755 CDO11_03850 SM00825 Beta-ketoacyl synthase CDO11_03880 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_03905 SM00487 DEAD-like helicases superfamily CDO11_03905 SM00490 helicase superfamily c-terminal domain CDO11_03945 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_04000 SM00382 ATPases associated with a variety of cellular activities CDO11_04010 SM00893 Electron transfer flavoprotein domain CDO11_04015 SM00893 Electron transfer flavoprotein domain CDO11_04050 SM00882 Coenzyme A transferase CDO11_04055 SM00882 Coenzyme A transferase CDO11_04095 SM00382 ATPases associated with a variety of cellular activities CDO11_04110 SM00528 Domain in histone-like proteins of HNS family CDO11_04260 SM01211 CDO11_04260 CDO11_04290 SM00382 ATPases associated with a variety of cellular activities CDO11_04360 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO11_04360 SM00866 CDO11_04360 CDO11_04440 SM00487 DEAD-like helicases superfamily CDO11_04445 SM01126 CDO11_04445 CDO11_04480 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO11_04485 SM00822 CDO11_04485 CDO11_04495 SM00825 Beta-ketoacyl synthase CDO11_04535 SM00382 ATPases associated with a variety of cellular activities CDO11_04630 SM00271 DnaJ molecular chaperone homology domain CDO11_04635 SM00448 cheY-homologous receiver domain CDO11_04640 SM00244 prohibitin homologues CDO11_04645 SM00244 prohibitin homologues CDO11_04655 SM00788 Adenylosuccinate synthetase CDO11_04760 SM01329 CDO11_04760 CDO11_04765 SM00917 LeuA allosteric (dimerisation) domain CDO11_04800 SM00862 Transcriptional regulatory protein, C terminal CDO11_04805 SM00342 helix_turn_helix, arabinose operon control protein CDO11_04840 SM01126 CDO11_04840 CDO11_04875 SM00464 Found in ATP-dependent protease La (LON) CDO11_04910 SM00838 Elongation factor G C-terminus CDO11_05040 SM01126 CDO11_05040 CDO11_05115 SM01126 CDO11_05115 CDO11_05120 SM01329 CDO11_05120 CDO11_05185 SM00382 ATPases associated with a variety of cellular activities CDO11_05185 SM00994 ClpX C4-type zinc finger CDO11_05185 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_05190 SM00382 ATPases associated with a variety of cellular activities CDO11_05190 SM00464 Found in ATP-dependent protease La (LON) CDO11_05195 SM00411 bacterial (prokaryotic) histone like domain CDO11_05220 SM00257 Lysin motif CDO11_05225 SM00849 Metallo-beta-lactamase superfamily CDO11_05240 SM00479 CDO11_05240 CDO11_05250 SM00331 Sigma factor PP2C-like phosphatases CDO11_05250 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CDO11_05330 SM01126 CDO11_05330 CDO11_05355 SM00849 Metallo-beta-lactamase superfamily CDO11_05360 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_05395 SM00382 ATPases associated with a variety of cellular activities CDO11_05405 SM00493 CDO11_05405 CDO11_05420 SM00460 Transglutaminase/protease-like homologues CDO11_05430 SM00382 ATPases associated with a variety of cellular activities CDO11_05525 SM00450 Rhodanese Homology Domain CDO11_05560 SM01154 CDO11_05560 CDO11_05570 SM00642 Alpha-amylase domain CDO11_05590 SM00354 helix_turn _helix lactose operon repressor CDO11_05595 SM00822 CDO11_05595 CDO11_05610 SM00448 cheY-homologous receiver domain CDO11_05610 SM00862 Transcriptional regulatory protein, C terminal CDO11_05615 SM00387 Histidine kinase-like ATPases CDO11_05615 SM00388 His Kinase A (phosphoacceptor) domain CDO11_05625 SM00421 helix_turn_helix, Lux Regulon CDO11_05625 SM00448 cheY-homologous receiver domain CDO11_05655 SM00387 Histidine kinase-like ATPases CDO11_05655 SM00388 His Kinase A (phosphoacceptor) domain CDO11_05655 SM00448 cheY-homologous receiver domain CDO11_05675 SM00919 Malic enzyme, NAD binding domain CDO11_05675 SM01274 CDO11_05675 CDO11_05760 SM01011 Aminopeptidase P, N-terminal domain CDO11_05800 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_05825 SM00072 Guanylate kinase homologues. CDO11_05840 SM01409 CDO11_05840 CDO11_05845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_05845 SM00954 Region found in RelA / SpoT proteins CDO11_05855 SM00487 DEAD-like helicases superfamily CDO11_05855 SM00490 helicase superfamily c-terminal domain CDO11_05905 SM00965 Secretin and TonB N terminus short domain CDO11_05945 SM00327 von Willebrand factor (vWF) type A domain CDO11_05950 SM00028 Tetratricopeptide repeats CDO11_05950 SM00327 von Willebrand factor (vWF) type A domain CDO11_05975 SM00861 Transketolase, pyrimidine binding domain CDO11_06040 SM00448 cheY-homologous receiver domain CDO11_06040 SM00862 Transcriptional regulatory protein, C terminal CDO11_06045 SM00387 Histidine kinase-like ATPases CDO11_06045 SM00388 His Kinase A (phosphoacceptor) domain CDO11_06065 SM00382 ATPases associated with a variety of cellular activities CDO11_06080 SM00849 Metallo-beta-lactamase superfamily CDO11_06115 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO11_06135 SM01126 CDO11_06135 CDO11_06145 SM00448 cheY-homologous receiver domain CDO11_06145 SM00862 Transcriptional regulatory protein, C terminal CDO11_06430 SM00422 helix_turn_helix, mercury resistance CDO11_06455 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CDO11_06465 SM00849 Metallo-beta-lactamase superfamily CDO11_06490 SM00421 helix_turn_helix, Lux Regulon CDO11_06580 SM00382 ATPases associated with a variety of cellular activities CDO11_06600 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_06730 SM00813 Alpha-L-arabinofuranosidase C-terminus CDO11_06745 SM01126 CDO11_06745 CDO11_06750 SM00382 ATPases associated with a variety of cellular activities CDO11_06750 SM00962 SRP54-type protein, GTPase domain CDO11_06750 SM00963 SRP54-type protein, helical bundle domain CDO11_06805 SM00363 S4 RNA-binding domain CDO11_06835 SM00382 ATPases associated with a variety of cellular activities CDO11_06835 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_06905 SM00855 Phosphoglycerate mutase family CDO11_06995 SM00382 ATPases associated with a variety of cellular activities CDO11_07035 SM00862 Transcriptional regulatory protein, C terminal CDO11_07040 SM00342 helix_turn_helix, arabinose operon control protein CDO11_07075 SM01230 CDO11_07075 CDO11_07120 SM01126 CDO11_07120 CDO11_07165 SM00382 ATPases associated with a variety of cellular activities CDO11_07180 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain CDO11_07220 SM00411 bacterial (prokaryotic) histone like domain CDO11_07240 SM00382 ATPases associated with a variety of cellular activities CDO11_07280 SM00732 Likely ribonuclease with RNase H fold. CDO11_07355 SM00267 diguanylate cyclase CDO11_07370 SM01126 CDO11_07370 CDO11_07515 SM00855 Phosphoglycerate mutase family CDO11_07535 SM00155 Phospholipase D. Active site motifs. CDO11_07540 SM00448 cheY-homologous receiver domain CDO11_07545 SM00138 Methyltransferase, chemotaxis proteins CDO11_07550 SM00052 Putative diguanylate phosphodiesterase CDO11_07550 SM00448 cheY-homologous receiver domain CDO11_07555 SM00260 Two component signalling adaptor domain CDO11_07560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_07560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_07565 SM00073 Histidine Phosphotransfer domain CDO11_07565 SM00260 Two component signalling adaptor domain CDO11_07565 SM00387 Histidine kinase-like ATPases CDO11_07565 SM01231 CDO11_07565 CDO11_07575 SM00487 DEAD-like helicases superfamily CDO11_07575 SM00490 helicase superfamily c-terminal domain CDO11_07575 SM00982 CDO11_07575 CDO11_07575 SM01058 CarD-like/TRCF domain CDO11_07600 SM00387 Histidine kinase-like ATPases CDO11_07600 SM00388 His Kinase A (phosphoacceptor) domain CDO11_07610 SM00645 Papain family cysteine protease CDO11_07630 SM00645 Papain family cysteine protease CDO11_07650 SM00645 Papain family cysteine protease CDO11_07720 SM00357 Cold shock protein domain CDO11_07840 SM00829 Enoylreductase CDO11_07870 SM00342 helix_turn_helix, arabinose operon control protein CDO11_07870 SM00478 endonuclease III CDO11_07870 SM01009 AlkA N-terminal domain CDO11_08005 SM00342 helix_turn_helix, arabinose operon control protein CDO11_08005 SM00478 endonuclease III CDO11_08005 SM01009 AlkA N-terminal domain CDO11_08055 SM00487 DEAD-like helicases superfamily CDO11_08055 SM00490 helicase superfamily c-terminal domain CDO11_08060 SM00052 Putative diguanylate phosphodiesterase CDO11_08060 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_08060 SM00091 PAS domain CDO11_08060 SM00267 diguanylate cyclase CDO11_08065 SM00363 S4 RNA-binding domain CDO11_08105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_08105 SM00387 Histidine kinase-like ATPases CDO11_08105 SM00388 His Kinase A (phosphoacceptor) domain CDO11_08110 SM00448 cheY-homologous receiver domain CDO11_08110 SM00862 Transcriptional regulatory protein, C terminal CDO11_08140 SM00382 ATPases associated with a variety of cellular activities CDO11_08265 SM00382 ATPases associated with a variety of cellular activities CDO11_08265 SM00448 cheY-homologous receiver domain CDO11_08270 SM00387 Histidine kinase-like ATPases CDO11_08270 SM00388 His Kinase A (phosphoacceptor) domain CDO11_08280 SM00881 CoA binding domain CDO11_08455 SM00904 Riboflavin kinase CDO11_08500 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_08570 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CDO11_08570 SM00534 ATPase domain of DNA mismatch repair MUTS family CDO11_08590 SM00382 ATPases associated with a variety of cellular activities CDO11_08630 SM00834 Putative regulatory protein CDO11_08665 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO11_08675 SM00382 ATPases associated with a variety of cellular activities CDO11_08800 SM00448 cheY-homologous receiver domain CDO11_08810 SM00341 Helicase and RNase D C-terminal CDO11_08810 SM00487 DEAD-like helicases superfamily CDO11_08810 SM00490 helicase superfamily c-terminal domain CDO11_08810 SM00956 CDO11_08810 CDO11_08825 SM00382 ATPases associated with a variety of cellular activities CDO11_08825 SM00487 DEAD-like helicases superfamily CDO11_08825 SM00490 helicase superfamily c-terminal domain CDO11_08825 SM00847 Helicase associated domain (HA2) Add an annotation CDO11_08895 SM00954 Region found in RelA / SpoT proteins CDO11_08920 SM00491 CDO11_08920 CDO11_08945 SM00448 cheY-homologous receiver domain CDO11_08950 SM00448 cheY-homologous receiver domain CDO11_08955 SM00260 Two component signalling adaptor domain CDO11_08960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_08965 SM00073 Histidine Phosphotransfer domain CDO11_08965 SM00260 Two component signalling adaptor domain CDO11_08965 SM00387 Histidine kinase-like ATPases CDO11_08965 SM00448 cheY-homologous receiver domain CDO11_08965 SM01231 CDO11_08965 CDO11_08975 SM00260 Two component signalling adaptor domain CDO11_09020 SM00369 Leucine-rich repeats, typical (most populated) subfamily CDO11_09080 SM01149 CDO11_09080 CDO11_09140 SM00382 ATPases associated with a variety of cellular activities CDO11_09145 SM00758 CDO11_09145 CDO11_09145 SM01217 CDO11_09145 CDO11_09165 SM00636 CDO11_09165 CDO11_09170 SM00812 Alpha-L-fucosidase CDO11_09220 SM00244 prohibitin homologues CDO11_09310 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_09375 SM00867 YceI-like domain CDO11_09385 SM00867 YceI-like domain CDO11_09390 SM00387 Histidine kinase-like ATPases CDO11_09390 SM00388 His Kinase A (phosphoacceptor) domain CDO11_09390 SM00448 cheY-homologous receiver domain CDO11_09395 SM00387 Histidine kinase-like ATPases CDO11_09395 SM00388 His Kinase A (phosphoacceptor) domain CDO11_09395 SM00448 cheY-homologous receiver domain CDO11_09400 SM00387 Histidine kinase-like ATPases CDO11_09400 SM00388 His Kinase A (phosphoacceptor) domain CDO11_09400 SM00448 cheY-homologous receiver domain CDO11_09420 SM00812 Alpha-L-fucosidase CDO11_09455 SM00530 Helix-turn-helix XRE-family like proteins CDO11_09505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_09510 SM00838 Elongation factor G C-terminus CDO11_09525 SM00358 Double-stranded RNA binding motif CDO11_09525 SM00535 Ribonuclease III family CDO11_09540 SM00448 cheY-homologous receiver domain CDO11_09550 SM01118 CDO11_09550 CDO11_09555 SM01118 CDO11_09555 CDO11_09600 SM00357 Cold shock protein domain CDO11_09620 SM00487 DEAD-like helicases superfamily CDO11_09620 SM00490 helicase superfamily c-terminal domain CDO11_09650 SM00267 diguanylate cyclase CDO11_09670 SM00869 Autotransporter beta-domain CDO11_09675 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO11_10085 SM00481 DNA polymerase alpha chain like domain CDO11_10125 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_10180 SM00972 Spore Coat Protein U domain CDO11_10195 SM00972 Spore Coat Protein U domain CDO11_10205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_10235 SM01172 CDO11_10235 CDO11_10240 SM00710 Parallel beta-helix repeats CDO11_10240 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CDO11_10265 SM00434 DNA Topoisomerase IV CDO11_10275 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_10335 SM00861 Transketolase, pyrimidine binding domain CDO11_10340 SM00507 HNH nucleases CDO11_10410 SM00271 DnaJ molecular chaperone homology domain CDO11_10450 SM00382 ATPases associated with a variety of cellular activities CDO11_10475 SM00861 Transketolase, pyrimidine binding domain CDO11_10485 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CDO11_10490 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_10575 SM00382 ATPases associated with a variety of cellular activities CDO11_10580 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO11_10600 SM00984 UDP binding domain CDO11_10620 SM00354 helix_turn _helix lactose operon repressor CDO11_10640 SM01018 B12 binding domain CDO11_10650 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO11_10685 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_10685 SM00357 Cold shock protein domain CDO11_10685 SM00955 CDO11_10685 CDO11_10705 SM00967 RNA 2'-O ribose methyltransferase substrate binding CDO11_10735 SM01126 CDO11_10735 CDO11_10795 SM01126 CDO11_10795 CDO11_10815 SM01126 CDO11_10815 CDO11_10975 SM01007 Class II Aldolase and Adducin N-terminal domain CDO11_11060 SM00382 ATPases associated with a variety of cellular activities CDO11_11075 SM01126 CDO11_11075 CDO11_11090 SM00363 S4 RNA-binding domain CDO11_11115 SM00354 helix_turn _helix lactose operon repressor CDO11_11190 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_11195 SM00411 bacterial (prokaryotic) histone like domain CDO11_11215 SM00822 CDO11_11215 CDO11_11245 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_11245 SM01240 CDO11_11245 CDO11_11310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_11325 SM00529 Helix-turn-helix diphteria tox regulatory element CDO11_11335 SM00479 CDO11_11335 CDO11_11420 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_11420 SM00732 Likely ribonuclease with RNase H fold. CDO11_11435 SM00448 cheY-homologous receiver domain CDO11_11440 SM00387 Histidine kinase-like ATPases CDO11_11450 SM00014 Acid phosphatase homologues CDO11_11915 SM01126 CDO11_11915 CDO11_11925 SM01126 CDO11_11925 CDO11_11970 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO11_11970 SM00465 GIY-YIG type nucleases (URI domain) CDO11_11980 SM00226 Low molecular weight phosphatase family CDO11_11995 SM00382 ATPases associated with a variety of cellular activities CDO11_12010 SM00849 Metallo-beta-lactamase superfamily CDO11_12015 SM01126 CDO11_12015 CDO11_12030 SM00382 ATPases associated with a variety of cellular activities CDO11_12090 SM00382 ATPases associated with a variety of cellular activities CDO11_12150 SM00448 cheY-homologous receiver domain CDO11_12155 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_12155 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_12155 SM00091 PAS domain CDO11_12155 SM00387 Histidine kinase-like ATPases CDO11_12155 SM00388 His Kinase A (phosphoacceptor) domain CDO11_12155 SM00448 cheY-homologous receiver domain CDO11_12190 SM00267 diguanylate cyclase CDO11_12235 SM00382 ATPases associated with a variety of cellular activities CDO11_12280 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_12310 SM00631 CDO11_12310 CDO11_12315 SM01217 CDO11_12315 CDO11_12330 SM00052 Putative diguanylate phosphodiesterase CDO11_12330 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_12330 SM00267 diguanylate cyclase CDO11_12415 SM00646 CDO11_12415 CDO11_12435 SM00869 Autotransporter beta-domain CDO11_12460 SM00387 Histidine kinase-like ATPases CDO11_12460 SM00388 His Kinase A (phosphoacceptor) domain CDO11_12465 SM00421 helix_turn_helix, Lux Regulon CDO11_12465 SM00448 cheY-homologous receiver domain CDO11_12470 SM00869 Autotransporter beta-domain CDO11_12505 SM00830 Chorismate mutase type II CDO11_12530 SM00240 Forkhead associated domain CDO11_12550 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO11_12550 SM00866 CDO11_12550 CDO11_12595 SM00434 DNA Topoisomerase IV CDO11_12620 SM00292 breast cancer carboxy-terminal domain CDO11_12620 SM00532 Ligase N family CDO11_12630 SM00771 ZipA, C-terminal domain (FtsZ-binding) CDO11_12635 SM00968 SMC proteins Flexible Hinge Domain CDO11_12685 SM00947 Carbonic anhydrase CDO11_12710 SM00479 CDO11_12710 CDO11_12745 SM00981 CDO11_12745 CDO11_12775 SM00644 CDO11_12775 CDO11_12785 SM00450 Rhodanese Homology Domain CDO11_12810 SM00478 endonuclease III CDO11_12820 SM00947 Carbonic anhydrase CDO11_12875 SM00382 ATPases associated with a variety of cellular activities CDO11_12890 SM00479 CDO11_12890 CDO11_12940 SM01323 CDO11_12940 CDO11_12955 SM00344 helix_turn_helix ASNC type CDO11_13065 SM00387 Histidine kinase-like ATPases CDO11_13080 SM00450 Rhodanese Homology Domain CDO11_13090 SM01126 CDO11_13090 CDO11_13145 SM00852 Probable molybdopterin binding domain CDO11_13150 SM00382 ATPases associated with a variety of cellular activities CDO11_13155 SM00564 beta-propeller repeat CDO11_13170 SM00028 Tetratricopeptide repeats CDO11_13180 SM00562 CDO11_13180 CDO11_13220 SM00382 ATPases associated with a variety of cellular activities CDO11_13245 SM00382 ATPases associated with a variety of cellular activities CDO11_13245 SM00843 CDO11_13245 CDO11_13275 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_13280 SM00382 ATPases associated with a variety of cellular activities CDO11_13280 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_13305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_13320 SM00052 Putative diguanylate phosphodiesterase CDO11_13320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_13320 SM00091 PAS domain CDO11_13320 SM00267 diguanylate cyclase CDO11_13325 SM00091 PAS domain CDO11_13325 SM00387 Histidine kinase-like ATPases CDO11_13330 SM00052 Putative diguanylate phosphodiesterase CDO11_13330 SM00267 diguanylate cyclase CDO11_13330 SM00448 cheY-homologous receiver domain CDO11_13335 SM00387 Histidine kinase-like ATPases CDO11_13350 SM00858 CDO11_13350 CDO11_13355 SM00260 Two component signalling adaptor domain CDO11_13355 SM00448 cheY-homologous receiver domain CDO11_13405 SM00047 Lysozyme subfamily 2 CDO11_13445 SM00421 helix_turn_helix, Lux Regulon CDO11_13445 SM00448 cheY-homologous receiver domain CDO11_13455 SM00448 cheY-homologous receiver domain CDO11_13460 SM00382 ATPases associated with a variety of cellular activities CDO11_13480 SM00822 CDO11_13480 CDO11_13485 SM00822 CDO11_13485 CDO11_13545 SM00382 ATPases associated with a variety of cellular activities CDO11_13600 SM00267 diguanylate cyclase CDO11_13605 SM00267 diguanylate cyclase CDO11_13610 SM00052 Putative diguanylate phosphodiesterase CDO11_13610 SM00267 diguanylate cyclase CDO11_13630 SM00382 ATPases associated with a variety of cellular activities CDO11_13630 SM00962 SRP54-type protein, GTPase domain CDO11_13645 SM00448 cheY-homologous receiver domain CDO11_13655 SM00073 Histidine Phosphotransfer domain CDO11_13655 SM00260 Two component signalling adaptor domain CDO11_13655 SM00387 Histidine kinase-like ATPases CDO11_13655 SM01231 CDO11_13655 CDO11_13700 SM01126 CDO11_13700 CDO11_13810 SM01126 CDO11_13810 CDO11_13830 SM00382 ATPases associated with a variety of cellular activities CDO11_13875 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO11_13885 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDO11_13905 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDO11_13945 SM00840 CDO11_13945 CDO11_13960 SM00245 tail specific protease CDO11_13970 SM01234 CDO11_13970 CDO11_14070 SM00841 Elongation factor P, C-terminal CDO11_14070 SM01185 CDO11_14070 CDO11_14080 SM00052 Putative diguanylate phosphodiesterase CDO11_14080 SM00267 diguanylate cyclase CDO11_14080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_14125 SM00382 ATPases associated with a variety of cellular activities CDO11_14130 SM00382 ATPases associated with a variety of cellular activities CDO11_14130 SM00487 DEAD-like helicases superfamily CDO11_14130 SM00490 helicase superfamily c-terminal domain CDO11_14155 SM00357 Cold shock protein domain CDO11_14165 SM01322 CDO11_14165 CDO11_14175 SM00052 Putative diguanylate phosphodiesterase CDO11_14175 SM00267 diguanylate cyclase CDO11_14190 SM00822 CDO11_14190 CDO11_14215 SM00853 MutL C terminal dimerisation domain CDO11_14215 SM01340 CDO11_14215 CDO11_14220 SM00646 CDO11_14220 CDO11_14280 SM00474 3'-5' exonuclease CDO11_14300 SM00528 Domain in histone-like proteins of HNS family CDO11_14355 SM01126 CDO11_14355 CDO11_14435 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_14460 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO11_14460 SM01091 Transporter associated domain CDO11_14495 SM00382 ATPases associated with a variety of cellular activities CDO11_14520 SM01230 CDO11_14520 CDO11_14540 SM00267 diguanylate cyclase CDO11_14540 SM00448 cheY-homologous receiver domain CDO11_14595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_14595 SM00091 PAS domain CDO11_14595 SM00387 Histidine kinase-like ATPases CDO11_14595 SM00388 His Kinase A (phosphoacceptor) domain CDO11_14595 SM00448 cheY-homologous receiver domain CDO11_14595 SM01079 CDO11_14595 CDO11_14600 SM00448 cheY-homologous receiver domain CDO11_14600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_14640 SM01126 CDO11_14640 CDO11_14650 SM00354 helix_turn _helix lactose operon repressor CDO11_14895 SM00260 Two component signalling adaptor domain CDO11_14905 SM00448 cheY-homologous receiver domain CDO11_14910 SM00073 Histidine Phosphotransfer domain CDO11_14910 SM00260 Two component signalling adaptor domain CDO11_14910 SM00387 Histidine kinase-like ATPases CDO11_14910 SM01231 CDO11_14910 CDO11_14925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14945 SM01126 CDO11_14945 CDO11_14950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_14960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_14970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_14975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_14975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_14995 SM00260 Two component signalling adaptor domain CDO11_15015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO11_15015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_15020 SM00138 Methyltransferase, chemotaxis proteins CDO11_15030 SM00448 cheY-homologous receiver domain CDO11_15035 SM00052 Putative diguanylate phosphodiesterase CDO11_15035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_15035 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_15035 SM00091 PAS domain CDO11_15035 SM00267 diguanylate cyclase CDO11_15060 SM00966 SpoVT / AbrB like domain CDO11_15085 SM00073 Histidine Phosphotransfer domain CDO11_15085 SM00387 Histidine kinase-like ATPases CDO11_15085 SM00388 His Kinase A (phosphoacceptor) domain CDO11_15085 SM00448 cheY-homologous receiver domain CDO11_15095 SM00448 cheY-homologous receiver domain CDO11_15095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_15105 SM00937 CDO11_15105 CDO11_15110 SM00850 LytTr DNA-binding domain CDO11_15170 SM00851 MGS-like domain CDO11_15170 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO11_15180 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CDO11_15230 SM00899 CDO11_15230 CDO11_15250 SM00822 CDO11_15250 CDO11_15255 SM00841 Elongation factor P, C-terminal CDO11_15255 SM01185 CDO11_15255 CDO11_15295 SM00758 CDO11_15295 CDO11_15315 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO11_15340 SM01130 CDO11_15340 CDO11_15360 SM00670 Large family of predicted nucleotide-binding domains CDO11_15455 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_15470 SM00382 ATPases associated with a variety of cellular activities CDO11_15510 SM00382 ATPases associated with a variety of cellular activities CDO11_15520 SM01103 CDO11_15520 CDO11_15530 SM00257 Lysin motif CDO11_15550 SM00463 Small MutS-related domain CDO11_15580 SM01192 CDO11_15580 CDO11_15580 SM01193 CDO11_15580 CDO11_15605 SM00387 Histidine kinase-like ATPases CDO11_15605 SM00433 TopoisomeraseII CDO11_15640 SM01091 Transporter associated domain CDO11_15680 SM00382 ATPases associated with a variety of cellular activities CDO11_15960 SM00448 cheY-homologous receiver domain CDO11_15960 SM00862 Transcriptional regulatory protein, C terminal CDO11_15970 SM00387 Histidine kinase-like ATPases CDO11_16005 SM00331 Sigma factor PP2C-like phosphatases CDO11_16005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CDO11_16060 SM00382 ATPases associated with a variety of cellular activities CDO11_16060 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_16200 SM00363 S4 RNA-binding domain CDO11_16205 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_16225 SM00421 helix_turn_helix, Lux Regulon CDO11_16225 SM00448 cheY-homologous receiver domain CDO11_16230 SM00450 Rhodanese Homology Domain CDO11_16255 SM00984 UDP binding domain CDO11_16300 SM01126 CDO11_16300 CDO11_16310 SM01126 CDO11_16310 CDO11_16355 SM00852 Probable molybdopterin binding domain CDO11_16465 SM00944 Pro-kumamolisin, activation domain CDO11_16530 SM01130 CDO11_16530 CDO11_16555 SM00342 helix_turn_helix, arabinose operon control protein CDO11_16560 SM00382 ATPases associated with a variety of cellular activities CDO11_16560 SM00962 SRP54-type protein, GTPase domain CDO11_16560 SM00963 SRP54-type protein, helical bundle domain CDO11_16575 SM00478 endonuclease III CDO11_16585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_16585 SM00091 PAS domain CDO11_16585 SM00387 Histidine kinase-like ATPases CDO11_16585 SM00388 His Kinase A (phosphoacceptor) domain CDO11_16585 SM00448 cheY-homologous receiver domain CDO11_16775 SM00422 helix_turn_helix, mercury resistance CDO11_16780 SM00411 bacterial (prokaryotic) histone like domain CDO11_16785 SM00873 B3/4 domain CDO11_16785 SM00874 tRNA synthetase B5 domain CDO11_16785 SM00896 Ferredoxin-fold anticodon binding domain CDO11_16810 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDO11_16840 SM00487 DEAD-like helicases superfamily CDO11_16840 SM00490 helicase superfamily c-terminal domain CDO11_16925 SM01001 AIR carboxylase CDO11_16945 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_16945 SM00322 K homology RNA-binding domain CDO11_16950 SM01387 CDO11_16950 CDO11_16970 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_16970 SM00322 K homology RNA-binding domain CDO11_17020 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO11_17025 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO11_17070 SM00822 CDO11_17070 CDO11_17100 SM00052 Putative diguanylate phosphodiesterase CDO11_17100 SM00267 diguanylate cyclase CDO11_17100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_17170 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDO11_17205 SM00257 Lysin motif CDO11_17240 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_17295 SM01160 CDO11_17295 CDO11_17310 SM01126 CDO11_17310 CDO11_17360 SM00098 Alkaline phosphatase homologues CDO11_17365 SM00977 TilS substrate C-terminal domain CDO11_17420 SM00316 Ribosomal protein S1-like RNA-binding domain CDO11_17520 SM01126 CDO11_17520 CDO11_17585 SM01126 CDO11_17585 CDO11_17600 SM00642 Alpha-amylase domain CDO11_17645 SM00528 Domain in histone-like proteins of HNS family CDO11_17685 SM00869 Autotransporter beta-domain CDO11_17765 SM00967 RNA 2'-O ribose methyltransferase substrate binding CDO11_17785 SM01126 CDO11_17785 CDO11_17850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_17850 SM00387 Histidine kinase-like ATPases CDO11_17905 SM00506 Appr-1"-p processing enzyme CDO11_17960 SM01060 CDO11_17960 CDO11_18005 SM00091 PAS domain CDO11_18005 SM00342 helix_turn_helix, arabinose operon control protein CDO11_18075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_18085 SM00481 DNA polymerase alpha chain like domain CDO11_18110 SM00966 SpoVT / AbrB like domain CDO11_18135 SM00855 Phosphoglycerate mutase family CDO11_18160 SM00220 Serine/Threonine protein kinases, catalytic domain CDO11_18170 SM00487 DEAD-like helicases superfamily CDO11_18215 SM00487 DEAD-like helicases superfamily CDO11_18215 SM00490 helicase superfamily c-terminal domain CDO11_18295 SM00382 ATPases associated with a variety of cellular activities CDO11_18295 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_18625 SM00478 endonuclease III CDO11_18640 SM00421 helix_turn_helix, Lux Regulon CDO11_18640 SM00448 cheY-homologous receiver domain CDO11_18680 SM00387 Histidine kinase-like ATPases CDO11_18680 SM00388 His Kinase A (phosphoacceptor) domain CDO11_18685 SM00448 cheY-homologous receiver domain CDO11_18685 SM00862 Transcriptional regulatory protein, C terminal CDO11_18720 SM00382 ATPases associated with a variety of cellular activities CDO11_18755 SM00990 CDO11_18755 CDO11_18800 SM00662 RNA polymerases D CDO11_18805 SM00363 S4 RNA-binding domain CDO11_18805 SM01390 CDO11_18805 CDO11_18865 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDO11_18870 SM01374 CDO11_18870 CDO11_18890 SM00322 K homology RNA-binding domain CDO11_18905 SM01382 CDO11_18905 CDO11_18905 SM01383 CDO11_18905 CDO11_18925 SM01403 CDO11_18925 CDO11_18940 SM00838 Elongation factor G C-terminus CDO11_18940 SM00889 Elongation factor G, domain IV CDO11_18955 SM00663 RNA polymerase I subunit A N-terminus CDO11_18980 SM00649 Ribosomal protein L11/L12 CDO11_18990 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CDO11_18990 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDO11_19040 SM01400 CDO11_19040 CDO11_19060 SM00028 Tetratricopeptide repeats CDO11_19070 SM00937 CDO11_19070 CDO11_19075 SM00028 Tetratricopeptide repeats CDO11_19080 SM00852 Probable molybdopterin binding domain CDO11_19200 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CDO11_19200 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CDO11_19215 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CDO11_19215 SM00475 5'-3' exonuclease CDO11_19300 SM01126 CDO11_19300 CDO11_19360 SM00448 cheY-homologous receiver domain CDO11_19360 SM00862 Transcriptional regulatory protein, C terminal CDO11_19365 SM00387 Histidine kinase-like ATPases CDO11_19365 SM00388 His Kinase A (phosphoacceptor) domain CDO11_19385 SM00014 Acid phosphatase homologues CDO11_19440 SM00855 Phosphoglycerate mutase family CDO11_19465 SM00829 Enoylreductase CDO11_19475 SM00382 ATPases associated with a variety of cellular activities CDO11_19525 SM00829 Enoylreductase CDO11_19570 SM00387 Histidine kinase-like ATPases CDO11_19570 SM00448 cheY-homologous receiver domain CDO11_19575 SM00448 cheY-homologous receiver domain CDO11_19680 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_19725 SM01126 CDO11_19725 CDO11_19785 SM00650 Ribosomal RNA adenine dimethylases CDO11_19850 SM00387 Histidine kinase-like ATPases CDO11_19850 SM00388 His Kinase A (phosphoacceptor) domain CDO11_19855 SM00448 cheY-homologous receiver domain CDO11_19855 SM00862 Transcriptional regulatory protein, C terminal CDO11_19865 SM00382 ATPases associated with a variety of cellular activities CDO11_20030 SM00996 S-adenosyl-L-homocysteine hydrolase CDO11_20030 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDO11_20095 SM00829 Enoylreductase CDO11_20135 SM00957 SecA DEAD-like domain CDO11_20135 SM00958 SecA preprotein cross-linking domain CDO11_20155 SM00864 Tubulin/FtsZ family, GTPase domain CDO11_20155 SM00865 Tubulin/FtsZ family, C-terminal domain CDO11_20160 SM00842 Cell division protein FtsA CDO11_20265 SM00448 cheY-homologous receiver domain CDO11_20265 SM00862 Transcriptional regulatory protein, C terminal CDO11_20270 SM00387 Histidine kinase-like ATPases CDO11_20270 SM00388 His Kinase A (phosphoacceptor) domain CDO11_20385 SM00382 ATPases associated with a variety of cellular activities CDO11_20415 SM00829 Enoylreductase CDO11_20430 SM00448 cheY-homologous receiver domain CDO11_20430 SM00862 Transcriptional regulatory protein, C terminal CDO11_20435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_20435 SM00387 Histidine kinase-like ATPases CDO11_20435 SM00388 His Kinase A (phosphoacceptor) domain CDO11_20580 SM01126 CDO11_20580 CDO11_20620 SM01126 CDO11_20620 CDO11_20660 SM00354 helix_turn _helix lactose operon repressor CDO11_20670 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO11_20670 SM00866 CDO11_20670 CDO11_20745 SM00387 Histidine kinase-like ATPases CDO11_20745 SM00388 His Kinase A (phosphoacceptor) domain CDO11_20745 SM00448 cheY-homologous receiver domain CDO11_20750 SM00448 cheY-homologous receiver domain CDO11_20755 SM00387 Histidine kinase-like ATPases CDO11_20755 SM00388 His Kinase A (phosphoacceptor) domain CDO11_20760 SM00749 bacterial OsmY and nodulation domain CDO11_20770 SM01350 CDO11_20770 CDO11_20815 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_20815 SM00245 tail specific protease CDO11_20830 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_20850 SM00936 Penicillin-binding protein 5, C-terminal domain CDO11_20880 SM00257 Lysin motif CDO11_20890 SM01126 CDO11_20890 CDO11_20940 SM00268 Actin CDO11_21000 SM00267 diguanylate cyclase CDO11_21005 SM01263 CDO11_21005 CDO11_21020 SM00382 ATPases associated with a variety of cellular activities CDO11_21020 SM01086 C-terminal, D2-small domain, of ClpB protein CDO11_21110 SM00448 cheY-homologous receiver domain CDO11_21110 SM00850 LytTr DNA-binding domain CDO11_21170 SM00637 CDO11_21170 CDO11_21185 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_21185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO11_21185 SM00091 PAS domain CDO11_21185 SM00267 diguanylate cyclase CDO11_21195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO11_21270 SM00060 Fibronectin type 3 domain CDO11_21365 SM00046 Diacylglycerol kinase catalytic domain (presumed) CDO11_21380 SM00271 DnaJ molecular chaperone homology domain CDO11_21475 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_21510 SM01126 CDO11_21510 CDO11_21615 SM00644 CDO11_21615 CDO11_21625 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO11_21645 SM01126 CDO11_21645 CDO11_21730 SM01126 CDO11_21730 CDO11_21750 SM01217 CDO11_21750 CDO11_21755 SM00905 Dihydroneopterin aldolase CDO11_21785 SM00400 zinc finger CDO11_21785 SM00493 CDO11_21785 CDO11_21785 SM00766 DNA primase DnaG DnaB-binding CDO11_21880 SM01126 CDO11_21880 CDO11_21935 SM00100 Cyclic nucleotide-monophosphate binding domain CDO11_21935 SM00419 helix_turn_helix, cAMP Regulatory protein CDO11_21955 SM00903 Flavin reductase like domain CDO11_22080 SM01150 CDO11_22080 CDO11_22095 SM01126 CDO11_22095 CDO11_22105 SM01126 CDO11_22105 CDO11_22120 SM00450 Rhodanese Homology Domain CDO11_22145 SM00387 Histidine kinase-like ATPases CDO11_22145 SM00388 His Kinase A (phosphoacceptor) domain CDO11_22150 SM00382 ATPases associated with a variety of cellular activities CDO11_22150 SM00448 cheY-homologous receiver domain CDO11_22235 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_22245 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO11_22340 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CDO11_22340 SM00474 3'-5' exonuclease CDO11_22340 SM00475 5'-3' exonuclease CDO11_22340 SM00482 DNA polymerase A domain CDO11_22355 SM00910 CDO11_22355 CDO11_22415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO11_22415 SM00331 Sigma factor PP2C-like phosphatases CDO11_22435 SM00867 YceI-like domain CDO11_22505 SM01126 CDO11_22505 CDO11_22550 SM00883 Chaperonin 10 Kd subunit CDO11_22585 SM00986 Uracil DNA glycosylase superfamily CDO11_22585 SM00987 UreE urease accessory protein, C-terminal domain CDO11_22590 SM00448 cheY-homologous receiver domain CDO11_22600 SM00382 ATPases associated with a variety of cellular activities CDO11_22605 SM00487 DEAD-like helicases superfamily CDO11_22605 SM00490 helicase superfamily c-terminal domain CDO11_22615 SM00357 Cold shock protein domain CDO11_22615 SM00382 ATPases associated with a variety of cellular activities CDO11_22615 SM00959 Rho termination factor, N-terminal domain CDO11_22670 SM00563 Phosphate acyltransferases CDO11_22795 SM00388 His Kinase A (phosphoacceptor) domain CDO11_22800 SM00387 Histidine kinase-like ATPases CDO11_22805 SM00448 cheY-homologous receiver domain CDO11_22805 SM00862 Transcriptional regulatory protein, C terminal CDO11_22900 SM01126 CDO11_22900 CDO11_22995 SM00878 Biotin carboxylase C-terminal domain CDO11_23060 SM00833 Cobalamin synthesis protein cobW C-terminal domain CDO11_23105 SM00836 DALR anticodon binding domain CDO11_23115 SM00382 ATPases associated with a variety of cellular activities CDO11_23220 SM00354 helix_turn _helix lactose operon repressor CDO11_23235 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO11_23245 SM00758 CDO11_23245 CDO11_23245 SM01217 CDO11_23245 CDO11_23275 SM00633 Glycosyl hydrolase family 10 CDO11_23330 SM01126 CDO11_23330 CDO11_23350 SM00052 Putative diguanylate phosphodiesterase CDO11_23395 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_23435 SM00530 Helix-turn-helix XRE-family like proteins CDO11_23495 SM00530 Helix-turn-helix XRE-family like proteins CDO11_23550 SM01126 CDO11_23550 CDO11_23570 SM00382 ATPases associated with a variety of cellular activities CDO11_23570 SM00448 cheY-homologous receiver domain CDO11_23575 SM00387 Histidine kinase-like ATPases CDO11_23575 SM00388 His Kinase A (phosphoacceptor) domain CDO11_23585 SM00938 Nitrogen regulatory protein P-II CDO11_23590 SM01230 CDO11_23590 CDO11_23615 SM00028 Tetratricopeptide repeats CDO11_23630 SM00563 Phosphate acyltransferases CDO11_23640 SM00155 Phospholipase D. Active site motifs. CDO11_23645 SM00867 YceI-like domain CDO11_23650 SM00855 Phosphoglycerate mutase family CDO11_23675 SM00530 Helix-turn-helix XRE-family like proteins CDO11_23705 SM00382 ATPases associated with a variety of cellular activities CDO11_23720 SM00382 ATPases associated with a variety of cellular activities CDO11_23770 SM00829 Enoylreductase CDO11_23800 SM00487 DEAD-like helicases superfamily CDO11_23800 SM00490 helicase superfamily c-terminal domain CDO11_23800 SM00847 Helicase associated domain (HA2) Add an annotation CDO11_23810 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO11_23870 SM00421 helix_turn_helix, Lux Regulon CDO11_23870 SM00448 cheY-homologous receiver domain CDO11_24000 SM00155 Phospholipase D. Active site motifs. CDO11_24025 SM01126 CDO11_24025 CDO11_24065 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO11_24100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO11_24100 SM00245 tail specific protease CDO11_24170 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO11_24330 SM00014 Acid phosphatase homologues CDO11_24340 SM00028 Tetratricopeptide repeats