locus-tag class description ATY42_00005 PF11638 DnaA N-terminal domain ATY42_00005 PF08299 Bacterial dnaA protein helix-turn-helix ATY42_00005 PF00308 Bacterial dnaA protein ATY42_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ATY42_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ATY42_00010 PF02767 DNA polymerase III beta subunit, central domain ATY42_00015 PF02463 RecF/RecN/SMC N terminal domain ATY42_00020 PF01751 Toprim domain ATY42_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_00020 PF18053 DNA gyrase B subunit insert domain ATY42_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ATY42_00020 PF00204 DNA gyrase B ATY42_00030 PF01435 Peptidase family M48 ATY42_00040 PF03544 Gram-negative bacterial TonB protein C-terminal ATY42_00045 PF01618 MotA/TolQ/ExbB proton channel family ATY42_00050 PF02472 Biopolymer transport protein ExbD/TolR ATY42_00055 PF02472 Biopolymer transport protein ExbD/TolR ATY42_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ATY42_00070 PF13091 PLD-like domain ATY42_00070 PF13396 Phospholipase_D-nuclease N-terminal ATY42_00080 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ATY42_00085 PF00155 Aminotransferase class I and II ATY42_00090 PF00593 TonB dependent receptor ATY42_00090 PF07715 TonB-dependent Receptor Plug Domain ATY42_00100 PF01609 Transposase DDE domain ATY42_00100 PF05598 Transposase domain (DUF772) ATY42_00105 PF01070 FMN-dependent dehydrogenase ATY42_00110 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ATY42_00125 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ATY42_00125 PF12241 Trans-2-enoyl-CoA reductase catalytic region ATY42_00125 PF07055 Enoyl reductase FAD binding domain ATY42_00130 PF00294 pfkB family carbohydrate kinase ATY42_00145 PF05598 Transposase domain (DUF772) ATY42_00145 PF01609 Transposase DDE domain ATY42_00160 PF00005 ABC transporter ATY42_00170 PF05598 Transposase domain (DUF772) ATY42_00180 PF00364 Biotin-requiring enzyme ATY42_00180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY42_00200 PF05598 Transposase domain (DUF772) ATY42_00200 PF01609 Transposase DDE domain ATY42_00210 PF00270 DEAD/DEAH box helicase ATY42_00210 PF00271 Helicase conserved C-terminal domain ATY42_00220 PF06903 VirK protein ATY42_00245 PF01609 Transposase DDE domain ATY42_00245 PF05598 Transposase domain (DUF772) ATY42_00295 PF03150 Di-haem cytochrome c peroxidase ATY42_00300 PF13460 NAD(P)H-binding ATY42_00305 PF00128 Alpha amylase, catalytic domain ATY42_00305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY42_00315 PF00128 Alpha amylase, catalytic domain ATY42_00320 PF02446 4-alpha-glucanotransferase ATY42_00325 PF11941 Domain of unknown function (DUF3459) ATY42_00325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY42_00325 PF00128 Alpha amylase, catalytic domain ATY42_00330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY42_00330 PF00128 Alpha amylase, catalytic domain ATY42_00330 PF02806 Alpha amylase, C-terminal all-beta domain ATY42_00335 PF00534 Glycosyl transferases group 1 ATY42_00335 PF08323 Starch synthase catalytic domain ATY42_00340 PF00072 Response regulator receiver domain ATY42_00340 PF00990 Diguanylate cyclase, GGDEF domain ATY42_00350 PF05661 Protein of unknown function (DUF808) ATY42_00355 PF03109 ABC1 family ATY42_00365 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_00375 PF00924 Mechanosensitive ion channel ATY42_00375 PF12794 Mechanosensitive ion channel inner membrane domain 1 ATY42_00375 PF12795 Mechanosensitive ion channel porin domain ATY42_00400 PF01464 Transglycosylase SLT domain ATY42_00415 PF01311 Bacterial export proteins, family 1 ATY42_00425 PF18269 T3SS EscN ATPase C-terminal domain ATY42_00425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY42_00425 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY42_00440 PF01514 Secretory protein of YscJ/FliF family ATY42_00455 PF01312 FlhB HrpN YscU SpaS Family ATY42_00460 PF00771 FHIPEP family ATY42_00475 PF00813 FliP family ATY42_00480 PF01313 Bacterial export proteins, family 3 ATY42_00525 PF05819 NolX protein ATY42_00550 PF00595 PDZ domain ATY42_00560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_00560 PF00512 His Kinase A (phospho-acceptor) domain ATY42_00560 PF08521 Two-component sensor kinase N-terminal ATY42_00565 PF08338 Domain of unknown function (DUF1731) ATY42_00565 PF01370 NAD dependent epimerase/dehydratase family ATY42_00575 PF01609 Transposase DDE domain ATY42_00575 PF05598 Transposase domain (DUF772) ATY42_00600 PF00665 Integrase core domain ATY42_00600 PF13936 Helix-turn-helix domain ATY42_00615 PF13344 Haloacid dehalogenase-like hydrolase ATY42_00615 PF00293 NUDIX domain ATY42_00640 PF13533 Biotin-lipoyl like ATY42_00645 PF05598 Transposase domain (DUF772) ATY42_00645 PF01609 Transposase DDE domain ATY42_00650 PF00005 ABC transporter ATY42_00665 PF00665 Integrase core domain ATY42_00665 PF13936 Helix-turn-helix domain ATY42_00675 PF08845 Toxin SymE, type I toxin-antitoxin system ATY42_00690 PF03006 Haemolysin-III related ATY42_00695 PF00271 Helicase conserved C-terminal domain ATY42_00695 PF09369 Domain of unknown function (DUF1998) ATY42_00695 PF00270 DEAD/DEAH box helicase ATY42_00750 PF01645 Conserved region in glutamate synthase ATY42_00750 PF00310 Glutamine amidotransferases class-II ATY42_00750 PF04898 Glutamate synthase central domain ATY42_00750 PF01493 GXGXG motif ATY42_00755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_00755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ATY42_00775 PF13936 Helix-turn-helix domain ATY42_00775 PF00665 Integrase core domain ATY42_00790 PF05598 Transposase domain (DUF772) ATY42_00795 PF04962 KduI/IolB family ATY42_00800 PF04962 KduI/IolB family ATY42_00805 PF00356 Bacterial regulatory proteins, lacI family ATY42_00825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY42_00825 PF02806 Alpha amylase, C-terminal all-beta domain ATY42_00825 PF00128 Alpha amylase, catalytic domain ATY42_00830 PF16657 Maltogenic Amylase, C-terminal domain ATY42_00830 PF00128 Alpha amylase, catalytic domain ATY42_00835 PF00128 Alpha amylase, catalytic domain ATY42_00835 PF11896 Domain of unknown function (DUF3416) ATY42_00840 PF13683 Integrase core domain ATY42_00840 PF13276 HTH-like domain ATY42_00855 PF00872 Transposase, Mutator family ATY42_00870 PF05598 Transposase domain (DUF772) ATY42_00885 PF13335 Magnesium chelatase, subunit ChlI C-terminal ATY42_00885 PF01078 Magnesium chelatase, subunit ChlI ATY42_00890 PF04380 Membrane fusogenic activity ATY42_00895 PF00543 Nitrogen regulatory protein P-II ATY42_00915 PF17284 Spermidine synthase tetramerisation domain ATY42_00920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY42_00920 PF17810 Arginine decarboxylase helical bundle domain ATY42_00920 PF17944 Arginine decarboxylase C-terminal helical extension ATY42_00925 PF05598 Transposase domain (DUF772) ATY42_00930 PF04717 Type VI secretion system, phage-baseplate injector ATY42_00930 PF16671 Actin cross-linking domain ATY42_00960 PF01134 Glucose inhibited division protein A ATY42_00960 PF13932 GidA associated domain ATY42_00970 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_00990 PF13649 Methyltransferase domain ATY42_01000 PF12697 Alpha/beta hydrolase family ATY42_01010 PF13683 Integrase core domain ATY42_01010 PF13276 HTH-like domain ATY42_01020 PF04349 Periplasmic glucan biosynthesis protein, MdoG ATY42_01030 PF00265 Thymidine kinase ATY42_01035 PF13361 UvrD-like helicase C-terminal domain ATY42_01035 PF00580 UvrD/REP helicase N-terminal domain ATY42_01045 PF04337 Protein of unknown function, DUF480 ATY42_01050 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ATY42_01055 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ATY42_01060 PF04820 Tryptophan halogenase ATY42_01075 PF00356 Bacterial regulatory proteins, lacI family ATY42_01085 PF01553 Acyltransferase ATY42_01105 PF01527 Transposase ATY42_01120 PF00657 GDSL-like Lipase/Acylhydrolase ATY42_01130 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ATY42_01135 PF01037 Lrp/AsnC ligand binding domain ATY42_01145 PF07660 Secretin and TonB N terminus short domain ATY42_01145 PF07715 TonB-dependent Receptor Plug Domain ATY42_01145 PF00593 TonB dependent receptor ATY42_01150 PF07715 TonB-dependent Receptor Plug Domain ATY42_01150 PF00593 TonB dependent receptor ATY42_01160 PF05598 Transposase domain (DUF772) ATY42_01190 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_01190 PF00107 Zinc-binding dehydrogenase ATY42_01195 PF00150 Cellulase (glycosyl hydrolase family 5) ATY42_01200 PF00150 Cellulase (glycosyl hydrolase family 5) ATY42_01205 PF00150 Cellulase (glycosyl hydrolase family 5) ATY42_01210 PF13936 Helix-turn-helix domain ATY42_01210 PF00665 Integrase core domain ATY42_01220 PF02810 SEC-C motif ATY42_01230 PF05598 Transposase domain (DUF772) ATY42_01230 PF01609 Transposase DDE domain ATY42_01235 PF01263 Aldose 1-epimerase ATY42_01240 PF07690 Major Facilitator Superfamily ATY42_01245 PF01126 Heme oxygenase ATY42_01250 PF13426 PAS domain ATY42_01250 PF00360 Phytochrome region ATY42_01250 PF01590 GAF domain ATY42_01250 PF08446 PAS fold ATY42_01255 PF03594 Benzoate membrane transport protein ATY42_01260 PF03594 Benzoate membrane transport protein ATY42_01295 PF01527 Transposase ATY42_01305 PF06827 Zinc finger found in FPG and IleRS ATY42_01305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ATY42_01305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ATY42_01315 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_01325 PF05598 Transposase domain (DUF772) ATY42_01335 PF04333 MlaA lipoprotein ATY42_01345 PF05494 MlaC protein ATY42_01350 PF02470 MlaD protein ATY42_01355 PF02405 Permease MlaE ATY42_01360 PF00005 ABC transporter ATY42_01390 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_01420 PF13683 Integrase core domain ATY42_01420 PF13276 HTH-like domain ATY42_01425 PF01527 Transposase ATY42_01445 PF01011 PQQ enzyme repeat ATY42_01445 PF13570 PQQ-like domain ATY42_01445 PF13360 PQQ-like domain ATY42_01450 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_01470 PF06165 Glycosyltransferase family 36 ATY42_01470 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ATY42_01485 PF00512 His Kinase A (phospho-acceptor) domain ATY42_01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_01490 PF02659 Putative manganese efflux pump ATY42_01495 PF09339 IclR helix-turn-helix domain ATY42_01495 PF01614 Bacterial transcriptional regulator ATY42_01500 PF07690 Major Facilitator Superfamily ATY42_01505 PF05336 L-rhamnose mutarotase ATY42_01530 PF01432 Peptidase family M3 ATY42_01545 PF00472 RF-1 domain ATY42_01555 PF00849 RNA pseudouridylate synthase ATY42_01565 PF03109 ABC1 family ATY42_01610 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_01615 PF01527 Transposase ATY42_01660 PF02558 Ketopantoate reductase PanE/ApbA ATY42_01660 PF08546 Ketopantoate reductase PanE/ApbA C terminal ATY42_01670 PF01061 ABC-2 type transporter ATY42_01675 PF00005 ABC transporter ATY42_01680 PF00175 Oxidoreductase NAD-binding domain ATY42_01680 PF01383 CpcD/allophycocyanin linker domain ATY42_01685 PF01545 Cation efflux family ATY42_01690 PF02583 Metal-sensitive transcriptional repressor ATY42_01700 PF01381 Helix-turn-helix ATY42_01710 PF00005 ABC transporter ATY42_01725 PF04820 Tryptophan halogenase ATY42_01745 PF00043 Glutathione S-transferase, C-terminal domain ATY42_01745 PF02798 Glutathione S-transferase, N-terminal domain ATY42_01750 PF00326 Prolyl oligopeptidase family ATY42_01750 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY42_01770 PF00490 Delta-aminolevulinic acid dehydratase ATY42_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_01780 PF03466 LysR substrate binding domain ATY42_01790 PF00667 FAD binding domain ATY42_01790 PF00175 Oxidoreductase NAD-binding domain ATY42_01790 PF00258 Flavodoxin ATY42_01800 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ATY42_01800 PF08501 Shikimate dehydrogenase substrate binding domain ATY42_01800 PF01488 Shikimate / quinate 5-dehydrogenase ATY42_01810 PF06733 DEAD_2 ATY42_01810 PF13307 Helicase C-terminal domain ATY42_01830 PF13533 Biotin-lipoyl like ATY42_01835 PF06628 Catalase-related immune-responsive ATY42_01835 PF00199 Catalase ATY42_01855 PF01207 Dihydrouridine synthase (Dus) ATY42_01865 PF00486 Transcriptional regulatory protein, C terminal ATY42_01865 PF00072 Response regulator receiver domain ATY42_01870 PF00672 HAMP domain ATY42_01870 PF00512 His Kinase A (phospho-acceptor) domain ATY42_01870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_01895 PF08279 HTH domain ATY42_01895 PF03099 Biotin/lipoate A/B protein ligase family ATY42_01895 PF02237 Biotin protein ligase C terminal domain ATY42_01900 PF03309 Type III pantothenate kinase ATY42_01915 PF02223 Thymidylate kinase ATY42_01935 PF00491 Arginase family ATY42_01950 PF05532 CsbD-like ATY42_01955 PF00579 tRNA synthetases class I (W and Y) ATY42_01960 PF00753 Metallo-beta-lactamase superfamily ATY42_01985 PF00892 EamA-like transporter family ATY42_02005 PF00199 Catalase ATY42_02010 PF08281 Sigma-70, region 4 ATY42_02010 PF04542 Sigma-70 region 2 ATY42_02020 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY42_02020 PF00883 Cytosol aminopeptidase family, catalytic domain ATY42_02030 PF01594 AI-2E family transporter ATY42_02040 PF01040 UbiA prenyltransferase family ATY42_02050 PF04055 Radical SAM superfamily ATY42_02050 PF06968 Biotin and Thiamin Synthesis associated domain ATY42_02055 PF00155 Aminotransferase class I and II ATY42_02080 PF00535 Glycosyl transferase family 2 ATY42_02090 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY42_02090 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY42_02095 PF05166 YcgL domain ATY42_02110 PF00723 Glycosyl hydrolases family 15 ATY42_02115 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY42_02115 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY42_02125 PF02254 TrkA-N domain ATY42_02125 PF00999 Sodium/hydrogen exchanger family ATY42_02130 PF00571 CBS domain ATY42_02130 PF01769 Divalent cation transporter ATY42_02130 PF03448 MgtE intracellular N domain ATY42_02140 PF13607 Succinyl-CoA ligase like flavodoxin domain ATY42_02140 PF13380 CoA binding domain ATY42_02140 PF00583 Acetyltransferase (GNAT) family ATY42_02150 PF02867 Ribonucleotide reductase, barrel domain ATY42_02150 PF03477 ATP cone domain ATY42_02150 PF00317 Ribonucleotide reductase, all-alpha domain ATY42_02155 PF00268 Ribonucleotide reductase, small chain ATY42_02175 PF01527 Transposase ATY42_02190 PF00108 Thiolase, N-terminal domain ATY42_02190 PF02803 Thiolase, C-terminal domain ATY42_02195 PF00775 Dioxygenase ATY42_02195 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ATY42_02205 PF00206 Lyase ATY42_02205 PF10397 Adenylosuccinate lyase C-terminus ATY42_02210 PF12146 Serine aminopeptidase, S33 ATY42_02215 PF02627 Carboxymuconolactone decarboxylase family ATY42_02225 PF01614 Bacterial transcriptional regulator ATY42_02225 PF09339 IclR helix-turn-helix domain ATY42_02235 PF00665 Integrase core domain ATY42_02235 PF13936 Helix-turn-helix domain ATY42_02240 PF00106 short chain dehydrogenase ATY42_02255 PF00750 tRNA synthetases class I (R) ATY42_02255 PF05746 DALR anticodon binding domain ATY42_02255 PF03485 Arginyl tRNA synthetase N terminal domain ATY42_02260 PF04002 RadC-like JAB domain ATY42_02265 PF02441 Flavoprotein ATY42_02265 PF04127 DNA / pantothenate metabolism flavoprotein ATY42_02270 PF00692 dUTPase ATY42_02275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY42_02275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY42_02275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY42_02275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY42_02290 PF00535 Glycosyl transferase family 2 ATY42_02295 PF01370 NAD dependent epimerase/dehydratase family ATY42_02305 PF17762 HTH domain found in ParB protein ATY42_02305 PF02195 ParB-like nuclease domain ATY42_02310 PF13614 AAA domain ATY42_02320 PF00156 Phosphoribosyl transferase domain ATY42_02325 PF03372 Endonuclease/Exonuclease/phosphatase family ATY42_02330 PF07690 Major Facilitator Superfamily ATY42_02340 PF03702 Anhydro-N-acetylmuramic acid kinase ATY42_02345 PF01551 Peptidase family M23 ATY42_02345 PF04225 Opacity-associated protein A LysM-like domain ATY42_02350 PF00579 tRNA synthetases class I (W and Y) ATY42_02385 PF01527 Transposase ATY42_02390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY42_02390 PF00672 HAMP domain ATY42_02390 PF00512 His Kinase A (phospho-acceptor) domain ATY42_02390 PF00072 Response regulator receiver domain ATY42_02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_02390 PF01627 Hpt domain ATY42_02395 PF00486 Transcriptional regulatory protein, C terminal ATY42_02395 PF00072 Response regulator receiver domain ATY42_02420 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_02430 PF01521 Iron-sulphur cluster biosynthesis ATY42_02440 PF09297 NADH pyrophosphatase zinc ribbon domain ATY42_02440 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ATY42_02440 PF00293 NUDIX domain ATY42_02445 PF17113 Regulatory signalling modulator protein AmpE ATY42_02445 PF03186 CobD/Cbib protein ATY42_02465 PF07690 Major Facilitator Superfamily ATY42_02480 PF12805 FUSC-like inner membrane protein yccS ATY42_02490 PF00005 ABC transporter ATY42_02490 PF12704 MacB-like periplasmic core domain ATY42_02490 PF02687 FtsX-like permease family ATY42_02495 PF02844 Phosphoribosylglycinamide synthetase, N domain ATY42_02495 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATY42_02495 PF02843 Phosphoribosylglycinamide synthetase, C domain ATY42_02505 PF02142 MGS-like domain ATY42_02505 PF01808 AICARFT/IMPCHase bienzyme ATY42_02515 PF12146 Serine aminopeptidase, S33 ATY42_02515 PF12147 Putative methyltransferase ATY42_02525 PF12146 Serine aminopeptidase, S33 ATY42_02525 PF12147 Putative methyltransferase ATY42_02530 PF00782 Dual specificity phosphatase, catalytic domain ATY42_02540 PF02954 Bacterial regulatory protein, Fis family ATY42_02550 PF01381 Helix-turn-helix ATY42_02575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY42_02575 PF02785 Biotin carboxylase C-terminal domain ATY42_02575 PF00289 Biotin carboxylase, N-terminal domain ATY42_02585 PF00364 Biotin-requiring enzyme ATY42_02590 PF01220 Dehydroquinase class II ATY42_02600 PF11412 Disulphide bond corrector protein DsbC ATY42_02600 PF02683 Cytochrome C biogenesis protein transmembrane region ATY42_02605 PF03091 CutA1 divalent ion tolerance protein ATY42_02625 PF17764 3′ DNA-binding domain (3′BD) ATY42_02625 PF00270 DEAD/DEAH box helicase ATY42_02625 PF00271 Helicase conserved C-terminal domain ATY42_02625 PF18074 Primosomal protein N C-terminal domain ATY42_02625 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ATY42_02650 PF01554 MatE ATY42_02655 PF01343 Peptidase family S49 ATY42_02680 PF01300 Telomere recombination ATY42_02685 PF01131 DNA topoisomerase ATY42_02685 PF01751 Toprim domain ATY42_02685 PF13368 Topoisomerase C-terminal repeat ATY42_02695 PF00114 Pilin (bacterial filament) ATY42_02695 PF07963 Prokaryotic N-terminal methylation motif ATY42_02700 PF04361 Protein of unknown function (DUF494) ATY42_02705 PF02481 DNA recombination-mediator protein A ATY42_02705 PF17782 DprA winged helix domain ATY42_02710 PF01476 LysM domain ATY42_02715 PF01327 Polypeptide deformylase ATY42_02720 PF00551 Formyl transferase ATY42_02720 PF02911 Formyl transferase, C-terminal domain ATY42_02725 PF01189 16S rRNA methyltransferase RsmB/F ATY42_02725 PF01029 NusB family ATY42_02740 PF00535 Glycosyl transferase family 2 ATY42_02760 PF00925 GTP cyclohydrolase II ATY42_02770 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY42_02775 PF02580 D-Tyr-tRNA(Tyr) deacylase ATY42_02780 PF04545 Sigma-70, region 4 ATY42_02780 PF00140 Sigma-70 factor, region 1.2 ATY42_02780 PF03979 Sigma-70 factor, region 1.1 ATY42_02780 PF04546 Sigma-70, non-essential region ATY42_02780 PF04539 Sigma-70 region 3 ATY42_02780 PF04542 Sigma-70 region 2 ATY42_02800 PF00589 Phage integrase family ATY42_02820 PF07996 Type IV secretion system proteins ATY42_02835 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ATY42_02850 PF00145 C-5 cytosine-specific DNA methylase ATY42_02925 PF00005 ABC transporter ATY42_02940 PF07715 TonB-dependent Receptor Plug Domain ATY42_02940 PF00593 TonB dependent receptor ATY42_02990 PF02322 Cytochrome bd terminal oxidase subunit II ATY42_02995 PF01654 Cytochrome bd terminal oxidase subunit I ATY42_03000 PF00072 Response regulator receiver domain ATY42_03000 PF00158 Sigma-54 interaction domain ATY42_03000 PF02954 Bacterial regulatory protein, Fis family ATY42_03015 PF03705 CheR methyltransferase, all-alpha domain ATY42_03015 PF01739 CheR methyltransferase, SAM binding domain ATY42_03015 PF01339 CheB methylesterase ATY42_03015 PF08448 PAS fold ATY42_03035 PF00672 HAMP domain ATY42_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_03035 PF06580 Histidine kinase ATY42_03035 PF02743 Cache domain ATY42_03040 PF00072 Response regulator receiver domain ATY42_03040 PF04397 LytTr DNA-binding domain ATY42_03045 PF00072 Response regulator receiver domain ATY42_03045 PF04397 LytTr DNA-binding domain ATY42_03055 PF13520 Amino acid permease ATY42_03070 PF05649 Peptidase family M13 ATY42_03070 PF01431 Peptidase family M13 ATY42_03085 PF00248 Aldo/keto reductase family ATY42_03090 PF03358 NADPH-dependent FMN reductase ATY42_03100 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY42_03110 PF03167 Uracil DNA glycosylase superfamily ATY42_03115 PF02469 Fasciclin domain ATY42_03130 PF00999 Sodium/hydrogen exchanger family ATY42_03135 PF00005 ABC transporter ATY42_03140 PF01061 ABC-2 type transporter ATY42_03160 PF00082 Subtilase family ATY42_03160 PF04151 Bacterial pre-peptidase C-terminal domain ATY42_03170 PF00072 Response regulator receiver domain ATY42_03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_03170 PF00512 His Kinase A (phospho-acceptor) domain ATY42_03170 PF13188 PAS domain ATY42_03170 PF08448 PAS fold ATY42_03175 PF00486 Transcriptional regulatory protein, C terminal ATY42_03175 PF00072 Response regulator receiver domain ATY42_03190 PF00691 OmpA family ATY42_03190 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY42_03195 PF01618 MotA/TolQ/ExbB proton channel family ATY42_03205 PF01641 SelR domain ATY42_03215 PF01037 Lrp/AsnC ligand binding domain ATY42_03220 PF01266 FAD dependent oxidoreductase ATY42_03225 PF01168 Alanine racemase, N-terminal domain ATY42_03225 PF00842 Alanine racemase, C-terminal domain ATY42_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_03245 PF00989 PAS fold ATY42_03245 PF00512 His Kinase A (phospho-acceptor) domain ATY42_03255 PF07995 Glucose / Sorbosone dehydrogenase ATY42_03270 PF08468 Methyltransferase small domain N-terminal ATY42_03270 PF05175 Methyltransferase small domain ATY42_03275 PF00849 RNA pseudouridylate synthase ATY42_03275 PF01479 S4 domain ATY42_03280 PF13419 Haloacid dehalogenase-like hydrolase ATY42_03310 PF04461 Protein of unknown function (DUF520) ATY42_03315 PF00892 EamA-like transporter family ATY42_03320 PF09383 NIL domain ATY42_03320 PF00005 ABC transporter ATY42_03325 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_03330 PF03180 NLPA lipoprotein ATY42_03355 PF00364 Biotin-requiring enzyme ATY42_03355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY42_03355 PF02817 e3 binding domain ATY42_03365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY42_03365 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_03385 PF00119 ATP synthase A chain ATY42_03390 PF00137 ATP synthase subunit C ATY42_03395 PF00430 ATP synthase B/B' CF(0) ATY42_03400 PF00213 ATP synthase delta (OSCP) subunit ATY42_03405 PF00306 ATP synthase alpha/beta chain, C terminal domain ATY42_03405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY42_03405 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY42_03410 PF00231 ATP synthase ATY42_03415 PF02874 ATP synthase alpha/beta family, beta-barrel domain ATY42_03415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY42_03420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ATY42_03425 PF01817 Chorismate mutase type II ATY42_03435 PF14602 Hexapeptide repeat of succinyl-transferase ATY42_03435 PF00132 Bacterial transferase hexapeptide (six repeats) ATY42_03435 PF12804 MobA-like NTP transferase domain ATY42_03440 PF13426 PAS domain ATY42_03440 PF08448 PAS fold ATY42_03440 PF00512 His Kinase A (phospho-acceptor) domain ATY42_03440 PF00072 Response regulator receiver domain ATY42_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_03470 PF00005 ABC transporter ATY42_03470 PF08402 TOBE domain ATY42_03475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_03480 PF01380 SIS domain ATY42_03495 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_03510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY42_03515 PF05275 Copper resistance protein B precursor (CopB) ATY42_03520 PF07732 Multicopper oxidase ATY42_03520 PF07731 Multicopper oxidase ATY42_03520 PF00394 Multicopper oxidase ATY42_03535 PF01432 Peptidase family M3 ATY42_03545 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY42_03545 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY42_03550 PF07977 FabA-like domain ATY42_03555 PF00817 impB/mucB/samB family ATY42_03555 PF11799 impB/mucB/samB family C-terminal domain ATY42_03560 PF13419 Haloacid dehalogenase-like hydrolase ATY42_03570 PF13185 GAF domain ATY42_03585 PF01242 6-pyruvoyl tetrahydropterin synthase ATY42_03595 PF00270 DEAD/DEAH box helicase ATY42_03595 PF00271 Helicase conserved C-terminal domain ATY42_03605 PF13417 Glutathione S-transferase, N-terminal domain ATY42_03610 PF00437 Type II/IV secretion system protein ATY42_03630 PF00571 CBS domain ATY42_03630 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_03635 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY42_03640 PF01370 NAD dependent epimerase/dehydratase family ATY42_03670 PF00872 Transposase, Mutator family ATY42_03680 PF00005 ABC transporter ATY42_03690 PF00766 Electron transfer flavoprotein FAD-binding domain ATY42_03690 PF01012 Electron transfer flavoprotein domain ATY42_03695 PF01012 Electron transfer flavoprotein domain ATY42_03700 PF16363 GDP-mannose 4,6 dehydratase ATY42_03705 PF00483 Nucleotidyl transferase ATY42_03710 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ATY42_03715 PF04321 RmlD substrate binding domain ATY42_03720 PF00483 Nucleotidyl transferase ATY42_03720 PF01050 Mannose-6-phosphate isomerase ATY42_03725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY42_03725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY42_03725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY42_03725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY42_03730 PF01144 Coenzyme A transferase ATY42_03735 PF01144 Coenzyme A transferase ATY42_03740 PF05045 Rhamnan synthesis protein F ATY42_03740 PF14307 Glycosyltransferase WbsX ATY42_03760 PF03886 ABC-type transport auxiliary lipoprotein component ATY42_03760 PF02470 MlaD protein ATY42_03765 PF00005 ABC transporter ATY42_03770 PF02405 Permease MlaE ATY42_03780 PF00816 H-NS histone family ATY42_03785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY42_03785 PF04073 Aminoacyl-tRNA editing domain ATY42_03785 PF03129 Anticodon binding domain ATY42_03795 PF01066 CDP-alcohol phosphatidyltransferase ATY42_03820 PF01609 Transposase DDE domain ATY42_03820 PF05598 Transposase domain (DUF772) ATY42_03830 PF01464 Transglycosylase SLT domain ATY42_03830 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ATY42_03835 PF00544 Pectate lyase ATY42_03860 PF13276 HTH-like domain ATY42_03860 PF13683 Integrase core domain ATY42_03865 PF01527 Transposase ATY42_03875 PF00133 tRNA synthetases class I (I, L, M and V) ATY42_03875 PF10458 Valyl tRNA synthetase tRNA binding arm ATY42_03875 PF08264 Anticodon-binding domain of tRNA ATY42_03890 PF00883 Cytosol aminopeptidase family, catalytic domain ATY42_03890 PF02789 Cytosol aminopeptidase family, N-terminal domain ATY42_03900 PF03739 Lipopolysaccharide export system permease LptF/LptG ATY42_03910 PF00589 Phage integrase family ATY42_03910 PF02899 Phage integrase, N-terminal SAM-like domain ATY42_03915 PF10411 Disulfide bond isomerase protein N-terminus ATY42_03915 PF13098 Thioredoxin-like domain ATY42_03920 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ATY42_03920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ATY42_03920 PF02769 AIR synthase related protein, C-terminal domain ATY42_03925 PF13018 Extended Signal Peptide of Type V secretion system ATY42_03925 PF05658 Head domain of trimeric autotransporter adhesin ATY42_03925 PF03895 YadA-like membrane anchor domain ATY42_03925 PF05662 Coiled stalk of trimeric autotransporter adhesin ATY42_03945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY42_03945 PF00437 Type II/IV secretion system protein ATY42_03955 PF00482 Type II secretion system (T2SS), protein F ATY42_03960 PF08334 Type II secretion system (T2SS), protein G ATY42_03965 PF12019 Type II transport protein GspH ATY42_03970 PF07963 Prokaryotic N-terminal methylation motif ATY42_03980 PF03934 Type II secretion system (T2SS), protein K ATY42_03985 PF05137 Fimbrial assembly protein (PilN) ATY42_03990 PF10741 Type II secretion system (T2SS), protein M subtype b ATY42_04000 PF00263 Bacterial type II and III secretion system protein ATY42_04000 PF03958 Bacterial type II/III secretion system short domain ATY42_04010 PF07702 UTRA domain ATY42_04010 PF00392 Bacterial regulatory proteins, gntR family ATY42_04020 PF00593 TonB dependent receptor ATY42_04020 PF07715 TonB-dependent Receptor Plug Domain ATY42_04045 PF09827 CRISPR associated protein Cas2 ATY42_04050 PF01867 CRISPR associated protein Cas1 ATY42_04070 PF09704 CRISPR-associated protein (Cas_Cas5) ATY42_04085 PF02545 Maf-like protein ATY42_04090 PF02620 Large ribosomal RNA subunit accumulation protein YceD ATY42_04095 PF01783 Ribosomal L32p protein family ATY42_04100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY42_04100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY42_04110 PF00698 Acyl transferase domain ATY42_04120 PF00550 Phosphopantetheine attachment site ATY42_04125 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY42_04125 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY42_04130 PF04715 Anthranilate synthase component I, N terminal region ATY42_04130 PF00425 chorismate binding enzyme ATY42_04135 PF02618 YceG-like family ATY42_04140 PF09115 DNA polymerase III, delta subunit, C terminal ATY42_04160 PF00158 Sigma-54 interaction domain ATY42_04160 PF06506 Propionate catabolism activator ATY42_04160 PF02954 Bacterial regulatory protein, Fis family ATY42_04170 PF00285 Citrate synthase, C-terminal domain ATY42_04175 PF00330 Aconitase family (aconitate hydratase) ATY42_04175 PF00694 Aconitase C-terminal domain ATY42_04180 PF04303 PrpF protein ATY42_04185 PF01609 Transposase DDE domain ATY42_04185 PF05598 Transposase domain (DUF772) ATY42_04190 PF00593 TonB dependent receptor ATY42_04190 PF07715 TonB-dependent Receptor Plug Domain ATY42_04225 PF13936 Helix-turn-helix domain ATY42_04225 PF00665 Integrase core domain ATY42_04235 PF08534 Redoxin ATY42_04245 PF01556 DnaJ C terminal domain ATY42_04245 PF00226 DnaJ domain ATY42_04250 PF00072 Response regulator receiver domain ATY42_04255 PF01145 SPFH domain / Band 7 family ATY42_04255 PF12221 Bacterial membrane protein N terminal ATY42_04260 PF01145 SPFH domain / Band 7 family ATY42_04270 PF00709 Adenylosuccinate synthetase ATY42_04275 PF01433 Peptidase family M1 domain ATY42_04275 PF11838 ERAP1-like C-terminal domain ATY42_04285 PF05598 Transposase domain (DUF772) ATY42_04300 PF01609 Transposase DDE domain ATY42_04300 PF05598 Transposase domain (DUF772) ATY42_04320 PF03279 Bacterial lipid A biosynthesis acyltransferase ATY42_04325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ATY42_04330 PF02321 Outer membrane efflux protein ATY42_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_04365 PF00330 Aconitase family (aconitate hydratase) ATY42_04370 PF00694 Aconitase C-terminal domain ATY42_04380 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY42_04385 PF08502 LeuA allosteric (dimerisation) domain ATY42_04385 PF00682 HMGL-like ATY42_04390 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_04400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY42_04400 PF00205 Thiamine pyrophosphate enzyme, central domain ATY42_04400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY42_04405 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ATY42_04405 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATY42_04410 PF01964 Radical SAM ThiC family ATY42_04410 PF13667 ThiC-associated domain ATY42_04415 PF18500 CadC C-terminal domain 1 ATY42_04415 PF00486 Transcriptional regulatory protein, C terminal ATY42_04420 PF12833 Helix-turn-helix domain ATY42_04425 PF07715 TonB-dependent Receptor Plug Domain ATY42_04425 PF00593 TonB dependent receptor ATY42_04435 PF00719 Inorganic pyrophosphatase ATY42_04470 PF00365 Phosphofructokinase ATY42_04480 PF08245 Mur ligase middle domain ATY42_04480 PF02875 Mur ligase family, glutamate ligase domain ATY42_04480 PF01225 Mur ligase family, catalytic domain ATY42_04490 PF01062 Bestrophin, RFP-TM, chloride channel ATY42_04505 PF00043 Glutathione S-transferase, C-terminal domain ATY42_04505 PF02798 Glutathione S-transferase, N-terminal domain ATY42_04510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ATY42_04510 PF00056 lactate/malate dehydrogenase, NAD binding domain ATY42_04515 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ATY42_04540 PF01474 Class-II DAHP synthetase family ATY42_04550 PF02600 Disulfide bond formation protein DsbB ATY42_04560 PF01527 Transposase ATY42_04565 PF13276 HTH-like domain ATY42_04565 PF13683 Integrase core domain ATY42_04610 PF13936 Helix-turn-helix domain ATY42_04610 PF00665 Integrase core domain ATY42_04640 PF01527 Transposase ATY42_04670 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_04690 PF05598 Transposase domain (DUF772) ATY42_04690 PF01609 Transposase DDE domain ATY42_04710 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_04715 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY42_04745 PF00180 Isocitrate/isopropylmalate dehydrogenase ATY42_04745 PF18324 Hypothetical protein TT1725 ATY42_04775 PF01527 Transposase ATY42_04800 PF05698 Bacterial trigger factor protein (TF) C-terminus ATY42_04800 PF05697 Bacterial trigger factor protein (TF) ATY42_04805 PF00574 Clp protease ATY42_04810 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_04810 PF06689 ClpX C4-type zinc finger ATY42_04810 PF07724 AAA domain (Cdc48 subfamily) ATY42_04815 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_04815 PF05362 Lon protease (S16) C-terminal proteolytic domain ATY42_04815 PF02190 ATP-dependent protease La (LON) substrate-binding domain ATY42_04820 PF00216 Bacterial DNA-binding protein ATY42_04845 PF05257 CHAP domain ATY42_04845 PF01476 LysM domain ATY42_04850 PF16123 Hydroxyacylglutathione hydrolase C-terminus ATY42_04850 PF00753 Metallo-beta-lactamase superfamily ATY42_04860 PF00075 RNase H ATY42_04865 PF00929 Exonuclease ATY42_04895 PF04717 Type VI secretion system, phage-baseplate injector ATY42_04895 PF16671 Actin cross-linking domain ATY42_04935 PF13356 Arm DNA-binding domain ATY42_04935 PF00589 Phage integrase family ATY42_04945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ATY42_04955 PF00753 Metallo-beta-lactamase superfamily ATY42_04955 PF12706 Beta-lactamase superfamily domain ATY42_04960 PF06463 Molybdenum Cofactor Synthesis C ATY42_04960 PF04055 Radical SAM superfamily ATY42_04970 PF01967 MoaC family ATY42_04975 PF02597 ThiS family ATY42_04980 PF02391 MoaE protein ATY42_04990 PF12169 DNA polymerase III subunits gamma and tau domain III ATY42_04990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ATY42_04990 PF12170 DNA polymerase III tau subunit V interacting with alpha ATY42_04995 PF02575 YbaB/EbfC DNA-binding family ATY42_05000 PF02132 RecR protein ATY42_05000 PF13662 Toprim domain ATY42_05005 PF01230 HIT domain ATY42_05015 PF13559 Domain of unknown function (DUF4129) ATY42_05015 PF11992 Domain of unknown function (DUF3488) ATY42_05015 PF01841 Transglutaminase-like superfamily ATY42_05025 PF17863 AAA lid domain ATY42_05025 PF07726 ATPase family associated with various cellular activities (AAA) ATY42_05045 PF01327 Polypeptide deformylase ATY42_05080 PF01609 Transposase DDE domain ATY42_05080 PF05598 Transposase domain (DUF772) ATY42_05100 PF00462 Glutaredoxin ATY42_05105 PF01522 Polysaccharide deacetylase ATY42_05125 PF03193 RsgA GTPase ATY42_05140 PF00128 Alpha amylase, catalytic domain ATY42_05155 PF00356 Bacterial regulatory proteins, lacI family ATY42_05160 PF00106 short chain dehydrogenase ATY42_05165 PF03600 Citrate transporter ATY42_05175 PF00486 Transcriptional regulatory protein, C terminal ATY42_05175 PF00072 Response regulator receiver domain ATY42_05180 PF00512 His Kinase A (phospho-acceptor) domain ATY42_05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_05180 PF08521 Two-component sensor kinase N-terminal ATY42_05190 PF00072 Response regulator receiver domain ATY42_05190 PF00196 Bacterial regulatory proteins, luxR family ATY42_05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_05215 PF03466 LysR substrate binding domain ATY42_05225 PF07690 Major Facilitator Superfamily ATY42_05230 PF00512 His Kinase A (phospho-acceptor) domain ATY42_05230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_05245 PF00390 Malic enzyme, N-terminal domain ATY42_05245 PF01515 Phosphate acetyl/butaryl transferase ATY42_05245 PF03949 Malic enzyme, NAD binding domain ATY42_05255 PF01527 Transposase ATY42_05260 PF13683 Integrase core domain ATY42_05260 PF13276 HTH-like domain ATY42_05270 PF01527 Transposase ATY42_05285 PF02581 Thiamine monophosphate synthase ATY42_05290 PF00301 Rubredoxin ATY42_05295 PF13369 Transglutaminase-like superfamily ATY42_05305 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ATY42_05315 PF01812 5-formyltetrahydrofolate cyclo-ligase family ATY42_05320 PF05164 Cell division protein ZapA ATY42_05330 PF03695 Uncharacterised protein family (UPF0149) ATY42_05335 PF05195 Aminopeptidase P, N-terminal domain ATY42_05335 PF00557 Metallopeptidase family M24 ATY42_05350 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_05355 PF00557 Metallopeptidase family M24 ATY42_05370 PF04055 Radical SAM superfamily ATY42_05370 PF06969 HemN C-terminal domain ATY42_05375 PF01725 Ham1 family ATY42_05385 PF03725 3' exoribonuclease family, domain 2 ATY42_05385 PF01138 3' exoribonuclease family, domain 1 ATY42_05390 PF03755 YicC-like family, N-terminal region ATY42_05390 PF08340 Domain of unknown function (DUF1732) ATY42_05395 PF00625 Guanylate kinase ATY42_05405 PF01192 RNA polymerase Rpb6 ATY42_05410 PF13291 ACT domain ATY42_05410 PF02824 TGS domain ATY42_05410 PF04607 Region found in RelA / SpoT proteins ATY42_05415 PF01042 Endoribonuclease L-PSP ATY42_05420 PF00270 DEAD/DEAH box helicase ATY42_05420 PF00271 Helicase conserved C-terminal domain ATY42_05420 PF17191 RecG wedge domain ATY42_05425 PF01156 Inosine-uridine preferring nucleoside hydrolase ATY42_05430 PF01197 Ribosomal protein L31 ATY42_05435 PF00285 Citrate synthase, C-terminal domain ATY42_05450 PF00905 Penicillin binding protein transpeptidase domain ATY42_05450 PF00912 Transglycosylase ATY42_05450 PF17092 Penicillin-binding protein OB-like domain ATY42_05475 PF00263 Bacterial type II and III secretion system protein ATY42_05475 PF03958 Bacterial type II/III secretion system short domain ATY42_05475 PF07660 Secretin and TonB N terminus short domain ATY42_05475 PF11741 AMIN domain ATY42_05495 PF17863 AAA lid domain ATY42_05495 PF07726 ATPase family associated with various cellular activities (AAA) ATY42_05515 PF07584 Aerotolerance regulator N-terminal ATY42_05515 PF00092 von Willebrand factor type A domain ATY42_05530 PF00375 Sodium:dicarboxylate symporter family ATY42_05535 PF02780 Transketolase, C-terminal domain ATY42_05535 PF02779 Transketolase, pyrimidine binding domain ATY42_05535 PF00456 Transketolase, thiamine diphosphate binding domain ATY42_05540 PF00593 TonB dependent receptor ATY42_05540 PF07715 TonB-dependent Receptor Plug Domain ATY42_05545 PF04225 Opacity-associated protein A LysM-like domain ATY42_05545 PF01551 Peptidase family M23 ATY42_05550 PF01476 LysM domain ATY42_05550 PF03734 L,D-transpeptidase catalytic domain ATY42_05575 PF00501 AMP-binding enzyme ATY42_05595 PF00072 Response regulator receiver domain ATY42_05595 PF00486 Transcriptional regulatory protein, C terminal ATY42_05600 PF08521 Two-component sensor kinase N-terminal ATY42_05600 PF00512 His Kinase A (phospho-acceptor) domain ATY42_05600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_05620 PF03459 TOBE domain ATY42_05620 PF00005 ABC transporter ATY42_05625 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_05635 PF00753 Metallo-beta-lactamase superfamily ATY42_05635 PF04273 Putative phosphatase (DUF442) ATY42_05670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ATY42_05670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATY42_05675 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_05690 PF00512 His Kinase A (phospho-acceptor) domain ATY42_05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_05690 PF00672 HAMP domain ATY42_05695 PF00072 Response regulator receiver domain ATY42_05695 PF00486 Transcriptional regulatory protein, C terminal ATY42_05705 PF08443 RimK-like ATP-grasp domain ATY42_05705 PF18030 RimK PreATP-grasp domain ATY42_05745 PF00520 Ion transport protein ATY42_05745 PF00027 Cyclic nucleotide-binding domain ATY42_05750 PF00202 Aminotransferase class-III ATY42_05765 PF01593 Flavin containing amine oxidoreductase ATY42_05770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ATY42_05770 PF00034 Cytochrome c ATY42_05785 PF00155 Aminotransferase class I and II ATY42_05795 PF00127 Copper binding proteins, plastocyanin/azurin family ATY42_05805 PF00202 Aminotransferase class-III ATY42_05830 PF03377 TAL effector repeat ATY42_05845 PF03377 TAL effector repeat ATY42_05860 PF03377 TAL effector repeat ATY42_05875 PF03377 TAL effector repeat ATY42_05895 PF01208 Uroporphyrinogen decarboxylase (URO-D) ATY42_05905 PF01761 3-dehydroquinate synthase ATY42_05910 PF01202 Shikimate kinase ATY42_05915 PF01243 Pyridoxamine 5'-phosphate oxidase ATY42_05915 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ATY42_05925 PF04012 PspA/IM30 family ATY42_05950 PF03738 Glutathionylspermidine synthase preATP-grasp ATY42_05975 PF00376 MerR family regulatory protein ATY42_05975 PF09278 MerR, DNA binding ATY42_06010 PF12706 Beta-lactamase superfamily domain ATY42_06030 PF00324 Amino acid permease ATY42_06035 PF00196 Bacterial regulatory proteins, luxR family ATY42_06040 PF00561 alpha/beta hydrolase fold ATY42_06045 PF00324 Amino acid permease ATY42_06055 PF01654 Cytochrome bd terminal oxidase subunit I ATY42_06060 PF02322 Cytochrome bd terminal oxidase subunit II ATY42_06065 PF00756 Putative esterase ATY42_06070 PF03448 MgtE intracellular N domain ATY42_06070 PF01769 Divalent cation transporter ATY42_06070 PF00571 CBS domain ATY42_06075 PF02896 PEP-utilising enzyme, TIM barrel domain ATY42_06075 PF00391 PEP-utilising enzyme, mobile domain ATY42_06075 PF05524 PEP-utilising enzyme, N-terminal ATY42_06080 PF00381 PTS HPr component phosphorylation site ATY42_06090 PF03668 P-loop ATPase protein family ATY42_06095 PF02603 HPr Serine kinase N terminus ATY42_06095 PF07475 HPr Serine kinase C-terminal domain ATY42_06100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY42_06105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ATY42_06110 PF04963 Sigma-54 factor, core binding domain ATY42_06110 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY42_06110 PF04552 Sigma-54, DNA binding domain ATY42_06115 PF00005 ABC transporter ATY42_06120 PF03968 OstA-like protein ATY42_06135 PF01380 SIS domain ATY42_06135 PF00571 CBS domain ATY42_06140 PF01722 BolA-like protein ATY42_06145 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY42_06165 PF00551 Formyl transferase ATY42_06180 PF02769 AIR synthase related protein, C-terminal domain ATY42_06180 PF00586 AIR synthase related protein, N-terminal domain ATY42_06190 PF01594 AI-2E family transporter ATY42_06195 PF00308 Bacterial dnaA protein ATY42_06200 PF00483 Nucleotidyl transferase ATY42_06205 PF01636 Phosphotransferase enzyme family ATY42_06225 PF07687 Peptidase dimerisation domain ATY42_06225 PF01546 Peptidase family M20/M25/M40 ATY42_06240 PF01527 Transposase ATY42_06255 PF05598 Transposase domain (DUF772) ATY42_06275 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ATY42_06280 PF01263 Aldose 1-epimerase ATY42_06285 PF01578 Cytochrome C assembly protein ATY42_06295 PF00448 SRP54-type protein, GTPase domain ATY42_06295 PF02881 SRP54-type protein, helical bundle domain ATY42_06295 PF02978 Signal peptide binding domain ATY42_06305 PF03060 Nitronate monooxygenase ATY42_06315 PF00886 Ribosomal protein S16 ATY42_06320 PF01782 RimM N-terminal domain ATY42_06320 PF05239 PRC-barrel domain ATY42_06325 PF01746 tRNA (Guanine-1)-methyltransferase ATY42_06330 PF01245 Ribosomal protein L19 ATY42_06335 PF01554 MatE ATY42_06340 PF01479 S4 domain ATY42_06360 PF01541 GIY-YIG catalytic domain ATY42_06365 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_06365 PF07724 AAA domain (Cdc48 subfamily) ATY42_06365 PF17871 AAA lid domain ATY42_06365 PF02861 Clp amino terminal domain, pathogenicity island component ATY42_06365 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_06380 PF01527 Transposase ATY42_06395 PF00593 TonB dependent receptor ATY42_06395 PF07715 TonB-dependent Receptor Plug Domain ATY42_06415 PF12557 Cob(I)alamin adenosyltransferase N terminal ATY42_06415 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ATY42_06425 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ATY42_06430 PF02277 Phosphoribosyltransferase ATY42_06440 PF02654 Cobalamin-5-phosphate synthase ATY42_06445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ATY42_06445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ATY42_06455 PF07690 Major Facilitator Superfamily ATY42_06460 PF06276 Ferric iron reductase FhuF-like transporter ATY42_06460 PF04183 IucA / IucC family ATY42_06470 PF07660 Secretin and TonB N terminus short domain ATY42_06470 PF00593 TonB dependent receptor ATY42_06470 PF07715 TonB-dependent Receptor Plug Domain ATY42_06480 PF13683 Integrase core domain ATY42_06480 PF13276 HTH-like domain ATY42_06485 PF02254 TrkA-N domain ATY42_06485 PF00999 Sodium/hydrogen exchanger family ATY42_06495 PF07715 TonB-dependent Receptor Plug Domain ATY42_06495 PF00593 TonB dependent receptor ATY42_06500 PF00593 TonB dependent receptor ATY42_06500 PF07715 TonB-dependent Receptor Plug Domain ATY42_06510 PF00593 TonB dependent receptor ATY42_06510 PF07715 TonB-dependent Receptor Plug Domain ATY42_06515 PF12848 ABC transporter ATY42_06515 PF00005 ABC transporter ATY42_06530 PF03466 LysR substrate binding domain ATY42_06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_06540 PF13472 GDSL-like Lipase/Acylhydrolase family ATY42_06540 PF07859 alpha/beta hydrolase fold ATY42_06565 PF12833 Helix-turn-helix domain ATY42_06570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_06570 PF00183 Hsp90 protein ATY42_06585 PF13276 HTH-like domain ATY42_06590 PF01527 Transposase ATY42_06600 PF00872 Transposase, Mutator family ATY42_06615 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY42_06630 PF13683 Integrase core domain ATY42_06630 PF13276 HTH-like domain ATY42_06635 PF01527 Transposase ATY42_06640 PF01609 Transposase DDE domain ATY42_06640 PF05598 Transposase domain (DUF772) ATY42_06645 PF00355 Rieske [2Fe-2S] domain ATY42_06655 PF00266 Aminotransferase class-V ATY42_06660 PF01458 Uncharacterized protein family (UPF0051) ATY42_06665 PF00005 ABC transporter ATY42_06670 PF01458 Uncharacterized protein family (UPF0051) ATY42_06675 PF02082 Transcriptional regulator ATY42_06725 PF14748 Pyrroline-5-carboxylate reductase dimerisation ATY42_06725 PF03807 NADP oxidoreductase coenzyme F420-dependent ATY42_06730 PF01168 Alanine racemase, N-terminal domain ATY42_06735 PF05598 Transposase domain (DUF772) ATY42_06735 PF01609 Transposase DDE domain ATY42_06740 PF00437 Type II/IV secretion system protein ATY42_06745 PF00437 Type II/IV secretion system protein ATY42_06760 PF13302 Acetyltransferase (GNAT) domain ATY42_06760 PF13673 Acetyltransferase (GNAT) domain ATY42_06760 PF00958 GMP synthase C terminal domain ATY42_06760 PF00117 Glutamine amidotransferase class-I ATY42_06760 PF03352 Methyladenine glycosylase ATY42_06775 PF02622 Uncharacterized ACR, COG1678 ATY42_06780 PF03652 Holliday junction resolvase ATY42_06785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY42_06785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY42_06790 PF02566 OsmC-like protein ATY42_06800 PF02567 Phenazine biosynthesis-like protein ATY42_06805 PF02567 Phenazine biosynthesis-like protein ATY42_06810 PF02567 Phenazine biosynthesis-like protein ATY42_06815 PF01842 ACT domain ATY42_06815 PF00696 Amino acid kinase family ATY42_06830 PF08245 Mur ligase middle domain ATY42_06845 PF00348 Polyprenyl synthetase ATY42_06850 PF00436 Single-strand binding protein family ATY42_06860 PF00360 Phytochrome region ATY42_06860 PF01590 GAF domain ATY42_06860 PF00990 Diguanylate cyclase, GGDEF domain ATY42_06860 PF00563 EAL domain ATY42_06865 PF00698 Acyl transferase domain ATY42_06865 PF00550 Phosphopantetheine attachment site ATY42_06865 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_06865 PF00107 Zinc-binding dehydrogenase ATY42_06865 PF08659 KR domain ATY42_06865 PF16197 Ketoacyl-synthetase C-terminal extension ATY42_06865 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY42_06865 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY42_06865 PF14765 Polyketide synthase dehydratase ATY42_06890 PF04328 Selenoprotein, putative ATY42_06895 PF02554 Carbon starvation protein CstA ATY42_06895 PF13722 5TM C-terminal transporter carbon starvation CstA ATY42_06900 PF02678 Pirin ATY42_06900 PF05726 Pirin C-terminal cupin domain ATY42_06910 PF04717 Type VI secretion system, phage-baseplate injector ATY42_06935 PF04717 Type VI secretion system, phage-baseplate injector ATY42_06975 PF05726 Pirin C-terminal cupin domain ATY42_06975 PF02678 Pirin ATY42_06985 PF04493 Endonuclease V ATY42_06990 PF00300 Histidine phosphatase superfamily (branch 1) ATY42_07000 PF01431 Peptidase family M13 ATY42_07000 PF05649 Peptidase family M13 ATY42_07010 PF00072 Response regulator receiver domain ATY42_07010 PF01339 CheB methylesterase ATY42_07015 PF01739 CheR methyltransferase, SAM binding domain ATY42_07015 PF03705 CheR methyltransferase, all-alpha domain ATY42_07020 PF13426 PAS domain ATY42_07020 PF00563 EAL domain ATY42_07020 PF00990 Diguanylate cyclase, GGDEF domain ATY42_07025 PF01584 CheW-like domain ATY42_07030 PF00672 HAMP domain ATY42_07030 PF02203 Tar ligand binding domain homologue ATY42_07030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_07035 PF01627 Hpt domain ATY42_07035 PF09078 CheY binding ATY42_07035 PF02895 Signal transducing histidine kinase, homodimeric domain ATY42_07035 PF01584 CheW-like domain ATY42_07045 PF17757 UvrB interaction domain ATY42_07045 PF02559 CarD-like/TRCF domain ATY42_07045 PF00271 Helicase conserved C-terminal domain ATY42_07045 PF03461 TRCF domain ATY42_07045 PF00270 DEAD/DEAH box helicase ATY42_07055 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ATY42_07065 PF00512 His Kinase A (phospho-acceptor) domain ATY42_07065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_07065 PF00672 HAMP domain ATY42_07090 PF05598 Transposase domain (DUF772) ATY42_07090 PF01609 Transposase DDE domain ATY42_07110 PF01609 Transposase DDE domain ATY42_07110 PF05598 Transposase domain (DUF772) ATY42_07115 PF05598 Transposase domain (DUF772) ATY42_07115 PF01609 Transposase DDE domain ATY42_07145 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY42_07150 PF01475 Ferric uptake regulator family ATY42_07175 PF00313 'Cold-shock' DNA-binding domain ATY42_07190 PF00899 ThiF family ATY42_07195 PF01026 TatD related DNase ATY42_07210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_07210 PF02770 Acyl-CoA dehydrogenase, middle domain ATY42_07210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_07235 PF13417 Glutathione S-transferase, N-terminal domain ATY42_07240 PF00733 Asparagine synthase ATY42_07240 PF13537 Glutamine amidotransferase domain ATY42_07245 PF03358 NADPH-dependent FMN reductase ATY42_07250 PF03796 DnaB-like helicase C terminal domain ATY42_07250 PF00772 DnaB-like helicase N terminal domain ATY42_07255 PF03441 FAD binding domain of DNA photolyase ATY42_07255 PF00875 DNA photolyase ATY42_07265 PF05736 OprF membrane domain ATY42_07265 PF00691 OmpA family ATY42_07285 PF00593 TonB dependent receptor ATY42_07285 PF07715 TonB-dependent Receptor Plug Domain ATY42_07305 PF00107 Zinc-binding dehydrogenase ATY42_07305 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_07310 PF00654 Voltage gated chloride channel ATY42_07320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ATY42_07320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ATY42_07325 PF12833 Helix-turn-helix domain ATY42_07325 PF02805 Metal binding domain of Ada ATY42_07325 PF06029 AlkA N-terminal domain ATY42_07325 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY42_07375 PF00271 Helicase conserved C-terminal domain ATY42_07375 PF00270 DEAD/DEAH box helicase ATY42_07375 PF03880 DbpA RNA binding domain ATY42_07380 PF08448 PAS fold ATY42_07380 PF00563 EAL domain ATY42_07380 PF00990 Diguanylate cyclase, GGDEF domain ATY42_07385 PF00849 RNA pseudouridylate synthase ATY42_07385 PF01479 S4 domain ATY42_07400 PF03737 Aldolase/RraA ATY42_07405 PF00144 Beta-lactamase ATY42_07410 PF00999 Sodium/hydrogen exchanger family ATY42_07415 PF00672 HAMP domain ATY42_07415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_07415 PF00512 His Kinase A (phospho-acceptor) domain ATY42_07420 PF00072 Response regulator receiver domain ATY42_07420 PF00486 Transcriptional regulatory protein, C terminal ATY42_07425 PF02321 Outer membrane efflux protein ATY42_07440 PF00873 AcrB/AcrD/AcrF family ATY42_07450 PF00005 ABC transporter ATY42_07450 PF00664 ABC transporter transmembrane region ATY42_07460 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_07470 PF05598 Transposase domain (DUF772) ATY42_07470 PF01609 Transposase DDE domain ATY42_07480 PF01609 Transposase DDE domain ATY42_07480 PF05598 Transposase domain (DUF772) ATY42_07490 PF01609 Transposase DDE domain ATY42_07490 PF05598 Transposase domain (DUF772) ATY42_07510 PF01121 Dephospho-CoA kinase ATY42_07515 PF06750 Bacterial Peptidase A24 N-terminal domain ATY42_07515 PF01478 Type IV leader peptidase family ATY42_07520 PF00482 Type II secretion system (T2SS), protein F ATY42_07525 PF00114 Pilin (bacterial filament) ATY42_07525 PF07963 Prokaryotic N-terminal methylation motif ATY42_07530 PF08019 Phosphoethanolamine transferase EptA/EptB ATY42_07530 PF00884 Sulfatase ATY42_07545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY42_07545 PF00437 Type II/IV secretion system protein ATY42_07550 PF05598 Transposase domain (DUF772) ATY42_07550 PF01609 Transposase DDE domain ATY42_07560 PF18543 Intracellular delivery domain ATY42_07560 PF02661 Fic/DOC family ATY42_07565 PF02954 Bacterial regulatory protein, Fis family ATY42_07565 PF00072 Response regulator receiver domain ATY42_07565 PF00158 Sigma-54 interaction domain ATY42_07570 PF00512 His Kinase A (phospho-acceptor) domain ATY42_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_07575 PF00549 CoA-ligase ATY42_07575 PF08442 ATP-grasp domain ATY42_07580 PF00549 CoA-ligase ATY42_07580 PF02629 CoA binding domain ATY42_07590 PF02540 NAD synthase ATY42_07590 PF00795 Carbon-nitrogen hydrolase ATY42_07595 PF13525 Outer membrane lipoprotein ATY42_07600 PF00849 RNA pseudouridylate synthase ATY42_07620 PF00982 Glycosyltransferase family 20 ATY42_07625 PF00723 Glycosyl hydrolases family 15 ATY42_07630 PF02358 Trehalose-phosphatase ATY42_07640 PF00593 TonB dependent receptor ATY42_07640 PF07715 TonB-dependent Receptor Plug Domain ATY42_07665 PF04376 Arginine-tRNA-protein transferase, N terminus ATY42_07665 PF04377 Arginine-tRNA-protein transferase, C terminus ATY42_07685 PF04542 Sigma-70 region 2 ATY42_07685 PF08281 Sigma-70, region 4 ATY42_07700 PF00378 Enoyl-CoA hydratase/isomerase ATY42_07715 PF00005 ABC transporter ATY42_07715 PF17755 UvrA DNA-binding domain ATY42_07715 PF17760 UvrA interaction domain ATY42_07720 PF00829 Ribosomal prokaryotic L21 protein ATY42_07725 PF01016 Ribosomal L27 protein ATY42_07730 PF01018 GTP1/OBG ATY42_07730 PF01926 50S ribosome-binding GTPase ATY42_07735 PF01649 Ribosomal protein S20 ATY42_07740 PF03023 Lipid II flippase MurJ ATY42_07745 PF01687 Riboflavin kinase ATY42_07745 PF06574 FAD synthetase ATY42_07750 PF08264 Anticodon-binding domain of tRNA ATY42_07750 PF06827 Zinc finger found in FPG and IleRS ATY42_07750 PF00133 tRNA synthetases class I (I, L, M and V) ATY42_07755 PF01252 Signal peptidase (SPase) II ATY42_07760 PF02401 LytB protein ATY42_07770 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY42_07770 PF06481 COX Aromatic Rich Motif ATY42_07775 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY42_07780 PF00510 Cytochrome c oxidase subunit III ATY42_07785 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ATY42_07795 PF04717 Type VI secretion system, phage-baseplate injector ATY42_07815 PF05593 RHS Repeat ATY42_07815 PF14220 Domain of unknown function (DUF4329) ATY42_07815 PF03527 RHS protein ATY42_07830 PF01527 Transposase ATY42_07835 PF13683 Integrase core domain ATY42_07835 PF13276 HTH-like domain ATY42_07850 PF01624 MutS domain I ATY42_07850 PF00488 MutS domain V ATY42_07850 PF05190 MutS family domain IV ATY42_07850 PF05192 MutS domain III ATY42_07850 PF05188 MutS domain II ATY42_07860 PF13276 HTH-like domain ATY42_07860 PF13683 Integrase core domain ATY42_07865 PF01527 Transposase ATY42_07875 PF18073 Rubredoxin metal binding domain ATY42_07885 PF01527 Transposase ATY42_07895 PF04185 Phosphoesterase family ATY42_07895 PF05506 Domain of unknown function (DUF756) ATY42_07900 PF05506 Domain of unknown function (DUF756) ATY42_07900 PF04185 Phosphoesterase family ATY42_07905 PF05506 Domain of unknown function (DUF756) ATY42_07905 PF04185 Phosphoesterase family ATY42_07925 PF00152 tRNA synthetases class II (D, K and N) ATY42_07925 PF02938 GAD domain ATY42_07925 PF01336 OB-fold nucleic acid binding domain ATY42_07940 PF01709 Transcriptional regulator ATY42_07945 PF02075 Crossover junction endodeoxyribonuclease RuvC ATY42_07950 PF01330 RuvA N terminal domain ATY42_07950 PF07499 RuvA, C-terminal domain ATY42_07955 PF02705 K+ potassium transporter ATY42_07960 PF17864 RuvB AAA lid domain ATY42_07960 PF05491 RuvB C-terminal winged helix domain ATY42_07960 PF05496 Holliday junction DNA helicase RuvB P-loop domain ATY42_07965 PF03061 Thioesterase superfamily ATY42_07970 PF01618 MotA/TolQ/ExbB proton channel family ATY42_07975 PF02472 Biopolymer transport protein ExbD/TolR ATY42_07985 PF04052 TolB amino-terminal domain ATY42_07985 PF07676 WD40-like Beta Propeller Repeat ATY42_07990 PF00691 OmpA family ATY42_08000 PF04055 Radical SAM superfamily ATY42_08005 PF01479 S4 domain ATY42_08005 PF00849 RNA pseudouridylate synthase ATY42_08050 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_08055 PF05598 Transposase domain (DUF772) ATY42_08060 PF06508 Queuosine biosynthesis protein QueC ATY42_08080 PF16124 RecQ zinc-binding ATY42_08080 PF00270 DEAD/DEAH box helicase ATY42_08080 PF00570 HRDC domain ATY42_08080 PF00271 Helicase conserved C-terminal domain ATY42_08080 PF09382 RQC domain ATY42_08085 PF00210 Ferritin-like domain ATY42_08090 PF00270 DEAD/DEAH box helicase ATY42_08090 PF11898 Domain of unknown function (DUF3418) ATY42_08090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ATY42_08090 PF00271 Helicase conserved C-terminal domain ATY42_08090 PF04408 Helicase associated domain (HA2) ATY42_08100 PF02685 Glucokinase ATY42_08105 PF02685 Glucokinase ATY42_08110 PF02685 Glucokinase ATY42_08120 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_08135 PF13186 Iron-sulfur cluster-binding domain ATY42_08135 PF04055 Radical SAM superfamily ATY42_08140 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ATY42_08145 PF03070 TENA/THI-4/PQQC family ATY42_08150 PF12706 Beta-lactamase superfamily domain ATY42_08155 PF04607 Region found in RelA / SpoT proteins ATY42_08155 PF13291 ACT domain ATY42_08155 PF02824 TGS domain ATY42_08165 PF00535 Glycosyl transferase family 2 ATY42_08170 PF00912 Transglycosylase ATY42_08170 PF00905 Penicillin binding protein transpeptidase domain ATY42_08170 PF14814 Bifunctional transglycosylase second domain ATY42_08180 PF04851 Type III restriction enzyme, res subunit ATY42_08180 PF13307 Helicase C-terminal domain ATY42_08185 PF00814 Glycoprotease family ATY42_08190 PF03747 ADP-ribosylglycohydrolase ATY42_08200 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ATY42_08200 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ATY42_08205 PF00072 Response regulator receiver domain ATY42_08210 PF00072 Response regulator receiver domain ATY42_08215 PF01584 CheW-like domain ATY42_08220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ATY42_08220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_08225 PF01627 Hpt domain ATY42_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_08225 PF01584 CheW-like domain ATY42_08225 PF00072 Response regulator receiver domain ATY42_08240 PF13302 Acetyltransferase (GNAT) domain ATY42_08255 PF00092 von Willebrand factor type A domain ATY42_08255 PF12450 von Willebrand factor ATY42_08255 PF12034 Domain of unknown function (DUF3520) ATY42_08270 PF01112 Asparaginase ATY42_08275 PF03932 CutC family ATY42_08320 PF01301 Glycosyl hydrolases family 35 ATY42_08325 PF07971 Glycosyl hydrolase family 92 ATY42_08325 PF17678 Glycosyl hydrolase family 92 N-terminal domain ATY42_08380 PF00664 ABC transporter transmembrane region ATY42_08380 PF00005 ABC transporter ATY42_08380 PF03412 Peptidase C39 family ATY42_08385 PF07691 PA14 domain ATY42_08385 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY42_08385 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_08385 PF14310 Fibronectin type III-like domain ATY42_08395 PF02838 Glycosyl hydrolase family 20, domain 2 ATY42_08395 PF00728 Glycosyl hydrolase family 20, catalytic domain ATY42_08395 PF07691 PA14 domain ATY42_08400 PF01476 LysM domain ATY42_08400 PF00704 Glycosyl hydrolases family 18 ATY42_08415 PF02685 Glucokinase ATY42_08420 PF04452 RNA methyltransferase ATY42_08425 PF00202 Aminotransferase class-III ATY42_08435 PF00459 Inositol monophosphatase family ATY42_08440 PF03819 MazG nucleotide pyrophosphohydrolase domain ATY42_08450 PF16200 C-terminal region of band_7 ATY42_08450 PF01145 SPFH domain / Band 7 family ATY42_08460 PF08669 Glycine cleavage T-protein C-terminal barrel domain ATY42_08460 PF01571 Aminomethyltransferase folate-binding domain ATY42_08465 PF01597 Glycine cleavage H-protein ATY42_08490 PF09317 Domain of unknown function (DUF1974) ATY42_08490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_08490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_08500 PF00440 Bacterial regulatory proteins, tetR family ATY42_08505 PF07715 TonB-dependent Receptor Plug Domain ATY42_08505 PF00593 TonB dependent receptor ATY42_08515 PF01430 Hsp33 protein ATY42_08520 PF00912 Transglycosylase ATY42_08525 PF00535 Glycosyl transferase family 2 ATY42_08530 PF00571 CBS domain ATY42_08530 PF00478 IMP dehydrogenase / GMP reductase domain ATY42_08540 PF03006 Haemolysin-III related ATY42_08545 PF16658 Class II release factor RF3, C-terminal domain ATY42_08545 PF00009 Elongation factor Tu GTP binding domain ATY42_08550 PF08525 Opacity-associated protein A N-terminal motif ATY42_08550 PF01551 Peptidase family M23 ATY42_08550 PF01476 LysM domain ATY42_08555 PF00561 alpha/beta hydrolase fold ATY42_08560 PF01053 Cys/Met metabolism PLP-dependent enzyme ATY42_08570 PF03313 Serine dehydratase alpha chain ATY42_08570 PF03315 Serine dehydratase beta chain ATY42_08580 PF04264 YceI-like domain ATY42_08590 PF04264 YceI-like domain ATY42_08595 PF00072 Response regulator receiver domain ATY42_08595 PF00512 His Kinase A (phospho-acceptor) domain ATY42_08595 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY42_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_08595 PF00672 HAMP domain ATY42_08595 PF01627 Hpt domain ATY42_08600 PF00672 HAMP domain ATY42_08600 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY42_08600 PF00512 His Kinase A (phospho-acceptor) domain ATY42_08600 PF01627 Hpt domain ATY42_08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_08600 PF00072 Response regulator receiver domain ATY42_08605 PF00672 HAMP domain ATY42_08605 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY42_08605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_08605 PF00512 His Kinase A (phospho-acceptor) domain ATY42_08605 PF01627 Hpt domain ATY42_08605 PF00072 Response regulator receiver domain ATY42_08640 PF07745 Glycosyl hydrolase family 53 ATY42_08655 PF01381 Helix-turn-helix ATY42_08655 PF06114 IrrE N-terminal-like domain ATY42_08655 PF09856 Predicted transcriptional regulator (DUF2083) ATY42_08660 PF00171 Aldehyde dehydrogenase family ATY42_08665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_08665 PF02770 Acyl-CoA dehydrogenase, middle domain ATY42_08665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_08670 PF00378 Enoyl-CoA hydratase/isomerase ATY42_08675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY42_08675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY42_08675 PF00378 Enoyl-CoA hydratase/isomerase ATY42_08680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY42_08680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY42_08685 PF01545 Cation efflux family ATY42_08690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY42_08690 PF00378 Enoyl-CoA hydratase/isomerase ATY42_08690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY42_08695 PF04542 Sigma-70 region 2 ATY42_08695 PF08281 Sigma-70, region 4 ATY42_08705 PF13180 PDZ domain ATY42_08710 PF00679 Elongation factor G C-terminus ATY42_08710 PF06421 GTP-binding protein LepA C-terminus ATY42_08710 PF00009 Elongation factor Tu GTP binding domain ATY42_08710 PF03144 Elongation factor Tu domain 2 ATY42_08715 PF10502 Signal peptidase, peptidase S26 ATY42_08725 PF14622 Ribonuclease-III-like ATY42_08725 PF00035 Double-stranded RNA binding motif ATY42_08730 PF07650 KH domain ATY42_08730 PF01926 50S ribosome-binding GTPase ATY42_08735 PF11967 Recombination protein O N terminal ATY42_08735 PF02565 Recombination protein O C terminal ATY42_08745 PF05958 tRNA (Uracil-5-)-methyltransferase ATY42_08760 PF05598 Transposase domain (DUF772) ATY42_08765 PF01323 DSBA-like thioredoxin domain ATY42_08770 PF01593 Flavin containing amine oxidoreductase ATY42_08775 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ATY42_08780 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_08790 PF01048 Phosphorylase superfamily ATY42_08795 PF00313 'Cold-shock' DNA-binding domain ATY42_08800 PF01494 FAD binding domain ATY42_08810 PF01494 FAD binding domain ATY42_08820 PF00270 DEAD/DEAH box helicase ATY42_08820 PF00271 Helicase conserved C-terminal domain ATY42_08820 PF08494 DEAD/H associated ATY42_08825 PF01068 ATP dependent DNA ligase domain ATY42_08825 PF04679 ATP dependent DNA ligase C terminal region ATY42_08825 PF04675 DNA ligase N terminus ATY42_08835 PF04675 DNA ligase N terminus ATY42_08835 PF01068 ATP dependent DNA ligase domain ATY42_08835 PF04679 ATP dependent DNA ligase C terminal region ATY42_08850 PF00990 Diguanylate cyclase, GGDEF domain ATY42_08850 PF00072 Response regulator receiver domain ATY42_08865 PF00108 Thiolase, N-terminal domain ATY42_08865 PF02803 Thiolase, C-terminal domain ATY42_08870 PF03797 Autotransporter beta-domain ATY42_08870 PF12951 Passenger-associated-transport-repeat ATY42_08870 PF00082 Subtilase family ATY42_08875 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ATY42_08875 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ATY42_08880 PF01863 Protein of unknown function DUF45 ATY42_08890 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY42_08925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY42_08940 PF08274 PhnA Zinc-Ribbon ATY42_08940 PF03831 PhnA domain ATY42_08950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY42_08955 PF07690 Major Facilitator Superfamily ATY42_09005 PF03706 Lysylphosphatidylglycerol synthase TM region ATY42_09005 PF09924 Uncharacterised conserved protein (DUF2156) ATY42_09015 PF01042 Endoribonuclease L-PSP ATY42_09060 PF04542 Sigma-70 region 2 ATY42_09060 PF04545 Sigma-70, region 4 ATY42_09080 PF04060 Putative Fe-S cluster ATY42_09090 PF09334 tRNA synthetases class I (M) ATY42_09090 PF01588 Putative tRNA binding domain ATY42_09110 PF00324 Amino acid permease ATY42_09115 PF02574 Homocysteine S-methyltransferase ATY42_09125 PF02592 Putative vitamin uptake transporter ATY42_09140 PF05598 Transposase domain (DUF772) ATY42_09215 PF13732 Domain of unknown function (DUF4162) ATY42_09215 PF00005 ABC transporter ATY42_09220 PF07715 TonB-dependent Receptor Plug Domain ATY42_09220 PF00593 TonB dependent receptor ATY42_09230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ATY42_09235 PF14579 Helix-hairpin-helix motif ATY42_09235 PF01336 OB-fold nucleic acid binding domain ATY42_09235 PF02811 PHP domain ATY42_09235 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY42_09235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY42_09240 PF01351 Ribonuclease HII ATY42_09245 PF02684 Lipid-A-disaccharide synthetase ATY42_09250 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ATY42_09250 PF00132 Bacterial transferase hexapeptide (six repeats) ATY42_09255 PF07977 FabA-like domain ATY42_09260 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ATY42_09260 PF00132 Bacterial transferase hexapeptide (six repeats) ATY42_09265 PF01103 Surface antigen ATY42_09265 PF07244 Surface antigen variable number repeat ATY42_09270 PF17820 PDZ domain ATY42_09270 PF02163 Peptidase family M50 ATY42_09275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ATY42_09275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ATY42_09275 PF13288 DXP reductoisomerase C-terminal domain ATY42_09285 PF01255 Putative undecaprenyl diphosphate synthase ATY42_09290 PF01765 Ribosome recycling factor ATY42_09295 PF00696 Amino acid kinase family ATY42_09305 PF00889 Elongation factor TS ATY42_09310 PF00318 Ribosomal protein S2 ATY42_09345 PF00557 Metallopeptidase family M24 ATY42_09350 PF01909 Nucleotidyltransferase domain ATY42_09350 PF01966 HD domain ATY42_09350 PF08335 GlnD PII-uridylyltransferase ATY42_09355 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ATY42_09355 PF00132 Bacterial transferase hexapeptide (six repeats) ATY42_09355 PF14602 Hexapeptide repeat of succinyl-transferase ATY42_09365 PF03960 ArsC family ATY42_09375 PF01546 Peptidase family M20/M25/M40 ATY42_09375 PF07687 Peptidase dimerisation domain ATY42_09380 PF13537 Glutamine amidotransferase domain ATY42_09380 PF00733 Asparagine synthase ATY42_09395 PF00593 TonB dependent receptor ATY42_09395 PF07715 TonB-dependent Receptor Plug Domain ATY42_09400 PF01804 Penicillin amidase ATY42_09405 PF00210 Ferritin-like domain ATY42_09410 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY42_09410 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY42_09425 PF02321 Outer membrane efflux protein ATY42_09430 PF00529 HlyD membrane-fusion protein of T1SS ATY42_09430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_09435 PF07690 Major Facilitator Superfamily ATY42_09470 PF00665 Integrase core domain ATY42_09470 PF13936 Helix-turn-helix domain ATY42_09490 PF02780 Transketolase, C-terminal domain ATY42_09490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ATY42_09490 PF02779 Transketolase, pyrimidine binding domain ATY42_09500 PF02770 Acyl-CoA dehydrogenase, middle domain ATY42_09500 PF12806 Acetyl-CoA dehydrogenase C-terminal like ATY42_09500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_09500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_09520 PF01668 SmpB protein ATY42_09525 PF03364 Polyketide cyclase / dehydrase and lipid transport ATY42_09530 PF03658 RnfH family Ubiquitin ATY42_09535 PF04355 SmpA / OmlA family ATY42_09540 PF01475 Ferric uptake regulator family ATY42_09545 PF02463 RecF/RecN/SMC N terminal domain ATY42_09550 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ATY42_09550 PF01628 HrcA protein C terminal domain ATY42_09555 PF01025 GrpE ATY42_09560 PF00012 Hsp70 protein ATY42_09565 PF01556 DnaJ C terminal domain ATY42_09565 PF00684 DnaJ central domain ATY42_09565 PF00226 DnaJ domain ATY42_09570 PF08543 Phosphomethylpyrimidine kinase ATY42_09575 PF01817 Chorismate mutase type II ATY42_09575 PF02153 Prephenate dehydrogenase ATY42_09590 PF03466 LysR substrate binding domain ATY42_09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_09595 PF00005 ABC transporter ATY42_09595 PF00664 ABC transporter transmembrane region ATY42_09600 PF01205 Uncharacterized protein family UPF0029 ATY42_09605 PF03641 Possible lysine decarboxylase ATY42_09610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ATY42_09610 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_09615 PF00364 Biotin-requiring enzyme ATY42_09615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ATY42_09615 PF02817 e3 binding domain ATY42_09620 PF02779 Transketolase, pyrimidine binding domain ATY42_09620 PF16870 2-oxoglutarate dehydrogenase C-terminal ATY42_09620 PF00676 Dehydrogenase E1 component ATY42_09620 PF16078 2-oxoglutarate dehydrogenase N-terminus ATY42_09630 PF08007 Cupin superfamily protein ATY42_09645 PF00206 Lyase ATY42_09645 PF08328 Adenylosuccinate lyase C-terminal ATY42_09665 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_09675 PF00665 Integrase core domain ATY42_09675 PF13936 Helix-turn-helix domain ATY42_09685 PF00206 Lyase ATY42_09685 PF10415 Fumarase C C-terminus ATY42_09715 PF00005 ABC transporter ATY42_09720 PF00392 Bacterial regulatory proteins, gntR family ATY42_09725 PF00255 Glutathione peroxidase ATY42_09730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY42_09730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY42_09735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY42_09735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY42_09735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY42_09740 PF04102 SlyX ATY42_09760 PF07690 Major Facilitator Superfamily ATY42_09765 PF00294 pfkB family carbohydrate kinase ATY42_09775 PF00809 Pterin binding enzyme ATY42_09775 PF02965 Vitamin B12 dependent methionine synthase, activation domain ATY42_09775 PF02607 B12 binding domain ATY42_09775 PF02310 B12 binding domain ATY42_09775 PF02574 Homocysteine S-methyltransferase ATY42_09780 PF02574 Homocysteine S-methyltransferase ATY42_09780 PF00809 Pterin binding enzyme ATY42_09785 PF01209 ubiE/COQ5 methyltransferase family ATY42_09790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_09790 PF02770 Acyl-CoA dehydrogenase, middle domain ATY42_09790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_09810 PF17876 Cold shock domain ATY42_09810 PF00575 S1 RNA binding domain ATY42_09810 PF00773 RNB domain ATY42_09810 PF08206 Ribonuclease B OB domain ATY42_09810 PF08461 Ribonuclease R winged-helix domain ATY42_09830 PF00588 SpoU rRNA Methylase family ATY42_09830 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY42_09840 PF01609 Transposase DDE domain ATY42_09840 PF05598 Transposase domain (DUF772) ATY42_09855 PF00872 Transposase, Mutator family ATY42_09865 PF00313 'Cold-shock' DNA-binding domain ATY42_09870 PF00561 alpha/beta hydrolase fold ATY42_09880 PF01609 Transposase DDE domain ATY42_09880 PF05598 Transposase domain (DUF772) ATY42_09890 PF01609 Transposase DDE domain ATY42_09890 PF05598 Transposase domain (DUF772) ATY42_09935 PF01609 Transposase DDE domain ATY42_09935 PF05598 Transposase domain (DUF772) ATY42_09945 PF05598 Transposase domain (DUF772) ATY42_09950 PF13683 Integrase core domain ATY42_09950 PF13276 HTH-like domain ATY42_09955 PF01527 Transposase ATY42_09965 PF03544 Gram-negative bacterial TonB protein C-terminal ATY42_09970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY42_09970 PF02403 Seryl-tRNA synthetase N-terminal domain ATY42_09985 PF05598 Transposase domain (DUF772) ATY42_09985 PF01609 Transposase DDE domain ATY42_09990 PF02525 Flavodoxin-like fold ATY42_09995 PF03466 LysR substrate binding domain ATY42_09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_10010 PF03377 TAL effector repeat ATY42_10025 PF03377 TAL effector repeat ATY42_10045 PF03377 TAL effector repeat ATY42_10070 PF03079 ARD/ARD' family ATY42_10075 PF00596 Class II Aldolase and Adducin N-terminal domain ATY42_10080 PF13520 Amino acid permease ATY42_10085 PF13520 Amino acid permease ATY42_10095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY42_10095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY42_10100 PF02913 FAD linked oxidases, C-terminal domain ATY42_10100 PF01565 FAD binding domain ATY42_10125 PF03918 Cytochrome C biogenesis protein ATY42_10130 PF08534 Redoxin ATY42_10135 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY42_10135 PF01578 Cytochrome C assembly protein ATY42_10140 PF03100 CcmE ATY42_10150 PF01578 Cytochrome C assembly protein ATY42_10155 PF03379 CcmB protein ATY42_10160 PF00005 ABC transporter ATY42_10165 PF00155 Aminotransferase class I and II ATY42_10170 PF00795 Carbon-nitrogen hydrolase ATY42_10190 PF00849 RNA pseudouridylate synthase ATY42_10190 PF01479 S4 domain ATY42_10195 PF04079 Segregation and condensation complex subunit ScpB ATY42_10200 PF02616 Segregation and condensation protein ScpA ATY42_10205 PF03795 YCII-related domain ATY42_10215 PF00356 Bacterial regulatory proteins, lacI family ATY42_10235 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_10240 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_10265 PF00795 Carbon-nitrogen hydrolase ATY42_10270 PF04371 Porphyromonas-type peptidyl-arginine deiminase ATY42_10280 PF00444 Ribosomal protein L36 ATY42_10285 PF02224 Cytidylate kinase ATY42_10290 PF00575 S1 RNA binding domain ATY42_10295 PF00216 Bacterial DNA-binding protein ATY42_10305 PF18073 Rubredoxin metal binding domain ATY42_10310 PF00953 Glycosyl transferase family 4 ATY42_10315 PF02719 Polysaccharide biosynthesis protein ATY42_10320 PF00483 Nucleotidyl transferase ATY42_10325 PF02254 TrkA-N domain ATY42_10325 PF00999 Sodium/hydrogen exchanger family ATY42_10360 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ATY42_10360 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ATY42_10365 PF00571 CBS domain ATY42_10365 PF00478 IMP dehydrogenase / GMP reductase domain ATY42_10370 PF00117 Glutamine amidotransferase class-I ATY42_10370 PF02540 NAD synthase ATY42_10370 PF00958 GMP synthase C terminal domain ATY42_10375 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ATY42_10380 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY42_10380 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ATY42_10380 PF00361 Proton-conducting membrane transporter ATY42_10385 PF03466 LysR substrate binding domain ATY42_10385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_10400 PF03601 Conserved hypothetical protein 698 ATY42_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_10405 PF03466 LysR substrate binding domain ATY42_10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_10410 PF03466 LysR substrate binding domain ATY42_10425 PF01566 Natural resistance-associated macrophage protein ATY42_10430 PF02742 Iron dependent repressor, metal binding and dimerisation domain ATY42_10430 PF01325 Iron dependent repressor, N-terminal DNA binding domain ATY42_10435 PF14437 MafB19-like deaminase ATY42_10440 PF00929 Exonuclease ATY42_10445 PF00924 Mechanosensitive ion channel ATY42_10445 PF05552 Conserved TM helix ATY42_10450 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ATY42_10450 PF02896 PEP-utilising enzyme, TIM barrel domain ATY42_10450 PF00391 PEP-utilising enzyme, mobile domain ATY42_10455 PF03618 Kinase/pyrophosphorylase ATY42_10490 PF01066 CDP-alcohol phosphatidyltransferase ATY42_10500 PF00561 alpha/beta hydrolase fold ATY42_10515 PF00355 Rieske [2Fe-2S] domain ATY42_10515 PF01266 FAD dependent oxidoreductase ATY42_10525 PF16921 Tex protein YqgF-like domain ATY42_10525 PF17674 HHH domain ATY42_10525 PF00575 S1 RNA binding domain ATY42_10525 PF09371 Tex-like protein N-terminal domain ATY42_10535 PF00072 Response regulator receiver domain ATY42_10545 PF04551 GcpE protein ATY42_10550 PF01569 PAP2 superfamily ATY42_10560 PF07690 Major Facilitator Superfamily ATY42_10570 PF01177 Asp/Glu/Hydantoin racemase ATY42_10575 PF00892 EamA-like transporter family ATY42_10580 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ATY42_10580 PF01565 FAD binding domain ATY42_10585 PF01180 Dihydroorotate dehydrogenase ATY42_10600 PF00171 Aldehyde dehydrogenase family ATY42_10610 PF03073 TspO/MBR family ATY42_10615 PF00742 Homoserine dehydrogenase ATY42_10615 PF13840 ACT domain ATY42_10615 PF03447 Homoserine dehydrogenase, NAD binding domain ATY42_10615 PF01842 ACT domain ATY42_10615 PF00696 Amino acid kinase family ATY42_10620 PF00288 GHMP kinases N terminal domain ATY42_10620 PF08544 GHMP kinases C terminal ATY42_10635 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_10635 PF14821 Threonine synthase N terminus ATY42_10650 PF03129 Anticodon binding domain ATY42_10650 PF13393 Histidyl-tRNA synthetase ATY42_10665 PF01634 ATP phosphoribosyltransferase ATY42_10665 PF08029 HisG, C-terminal domain ATY42_10670 PF00815 Histidinol dehydrogenase ATY42_10675 PF00155 Aminotransferase class I and II ATY42_10680 PF00475 Imidazoleglycerol-phosphate dehydratase ATY42_10685 PF00117 Glutamine amidotransferase class-I ATY42_10690 PF00977 Histidine biosynthesis protein ATY42_10695 PF00977 Histidine biosynthesis protein ATY42_10700 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ATY42_10700 PF01502 Phosphoribosyl-AMP cyclohydrolase ATY42_10710 PF03377 TAL effector repeat ATY42_10725 PF03377 TAL effector repeat ATY42_10820 PF02303 Helix-destabilising protein ATY42_10850 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_10860 PF05598 Transposase domain (DUF772) ATY42_10860 PF01609 Transposase DDE domain ATY42_10875 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_10885 PF03377 TAL effector repeat ATY42_10900 PF03377 TAL effector repeat ATY42_10905 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_10925 PF03377 TAL effector repeat ATY42_10955 PF05598 Transposase domain (DUF772) ATY42_10955 PF01609 Transposase DDE domain ATY42_10970 PF00872 Transposase, Mutator family ATY42_10980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY42_11000 PF01066 CDP-alcohol phosphatidyltransferase ATY42_11005 PF08459 UvrC Helix-hairpin-helix N-terminal ATY42_11005 PF02151 UvrB/uvrC motif ATY42_11005 PF01541 GIY-YIG catalytic domain ATY42_11015 PF01451 Low molecular weight phosphotyrosine protein phosphatase ATY42_11020 PF02348 Cytidylyltransferase ATY42_11025 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ATY42_11030 PF00005 ABC transporter ATY42_11030 PF00664 ABC transporter transmembrane region ATY42_11040 PF01618 MotA/TolQ/ExbB proton channel family ATY42_11045 PF00753 Metallo-beta-lactamase superfamily ATY42_11045 PF03772 Competence protein ATY42_11060 PF00005 ABC transporter ATY42_11065 PF12704 MacB-like periplasmic core domain ATY42_11065 PF02687 FtsX-like permease family ATY42_11075 PF03937 Flavinator of succinate dehydrogenase ATY42_11080 PF13085 2Fe-2S iron-sulfur cluster binding domain ATY42_11090 PF00890 FAD binding domain ATY42_11090 PF02910 Fumarate reductase flavoprotein C-term ATY42_11095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY42_11100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATY42_11105 PF01571 Aminomethyltransferase folate-binding domain ATY42_11110 PF17912 MalK OB fold domain ATY42_11110 PF00005 ABC transporter ATY42_11115 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ATY42_11115 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ATY42_11120 PF02685 Glucokinase ATY42_11125 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ATY42_11130 PF00920 Dehydratase family ATY42_11135 PF01081 KDPG and KHG aldolase ATY42_11140 PF05598 Transposase domain (DUF772) ATY42_11170 PF01627 Hpt domain ATY42_11170 PF00072 Response regulator receiver domain ATY42_11170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY42_11170 PF00512 His Kinase A (phospho-acceptor) domain ATY42_11170 PF00672 HAMP domain ATY42_11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_11180 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_11200 PF00990 Diguanylate cyclase, GGDEF domain ATY42_11200 PF08448 PAS fold ATY42_11230 PF02253 Phospholipase A1 ATY42_11240 PF05683 Fumarase C-terminus ATY42_11240 PF05681 Fumarate hydratase (Fumerase) ATY42_11245 PF00005 ABC transporter ATY42_11250 PF00970 Oxidoreductase FAD-binding domain ATY42_11250 PF00175 Oxidoreductase NAD-binding domain ATY42_11255 PF00255 Glutathione peroxidase ATY42_11275 PF00082 Subtilase family ATY42_11280 PF04542 Sigma-70 region 2 ATY42_11280 PF08281 Sigma-70, region 4 ATY42_11290 PF12802 MarR family ATY42_11315 PF00854 POT family ATY42_11325 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_11325 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY42_11325 PF14310 Fibronectin type III-like domain ATY42_11340 PF00563 EAL domain ATY42_11340 PF00360 Phytochrome region ATY42_11340 PF00990 Diguanylate cyclase, GGDEF domain ATY42_11340 PF01590 GAF domain ATY42_11345 PF00474 Sodium:solute symporter family ATY42_11350 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY42_11350 PF14310 Fibronectin type III-like domain ATY42_11350 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_11370 PF00342 Phosphoglucose isomerase ATY42_11375 PF02261 Aspartate decarboxylase ATY42_11380 PF02569 Pantoate-beta-alanine ligase ATY42_11385 PF02548 Ketopantoate hydroxymethyltransferase ATY42_11390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY42_11395 PF12627 Probable RNA and SrmB- binding site of polymerase A ATY42_11395 PF12626 Polymerase A arginine-rich C-terminus ATY42_11395 PF01743 Poly A polymerase head domain ATY42_11405 PF02649 Type I GTP cyclohydrolase folE2 ATY42_11410 PF01520 N-acetylmuramoyl-L-alanine amidase ATY42_11430 PF05598 Transposase domain (DUF772) ATY42_11435 PF00082 Subtilase family ATY42_11435 PF03797 Autotransporter beta-domain ATY42_11440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_11445 PF00873 AcrB/AcrD/AcrF family ATY42_11450 PF02321 Outer membrane efflux protein ATY42_11455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_11455 PF08448 PAS fold ATY42_11455 PF13426 PAS domain ATY42_11455 PF00072 Response regulator receiver domain ATY42_11455 PF00512 His Kinase A (phospho-acceptor) domain ATY42_11460 PF00196 Bacterial regulatory proteins, luxR family ATY42_11460 PF00072 Response regulator receiver domain ATY42_11465 PF12951 Passenger-associated-transport-repeat ATY42_11470 PF01527 Transposase ATY42_11480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ATY42_11485 PF00800 Prephenate dehydratase ATY42_11485 PF01817 Chorismate mutase type II ATY42_11485 PF01842 ACT domain ATY42_11490 PF00266 Aminotransferase class-V ATY42_11495 PF00174 Oxidoreductase molybdopterin binding domain ATY42_11505 PF01794 Ferric reductase like transmembrane component ATY42_11530 PF07702 UTRA domain ATY42_11530 PF00392 Bacterial regulatory proteins, gntR family ATY42_11540 PF07969 Amidohydrolase family ATY42_11545 PF00221 Aromatic amino acid lyase ATY42_11555 PF17392 Urocanase C-terminal domain ATY42_11555 PF17391 Urocanase N-terminal domain ATY42_11555 PF01175 Urocanase Rossmann-like domain ATY42_11575 PF01527 Transposase ATY42_11580 PF00521 DNA gyrase/topoisomerase IV, subunit A ATY42_11580 PF03989 DNA gyrase C-terminal domain, beta-propeller ATY42_11585 PF01008 Initiation factor 2 subunit family ATY42_11595 PF00152 tRNA synthetases class II (D, K and N) ATY42_11600 PF00533 BRCA1 C Terminus (BRCT) domain ATY42_11600 PF01653 NAD-dependent DNA ligase adenylation domain ATY42_11600 PF03120 NAD-dependent DNA ligase OB-fold domain ATY42_11600 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ATY42_11600 PF12826 Helix-hairpin-helix motif ATY42_11610 PF04354 ZipA, C-terminal FtsZ-binding domain ATY42_11615 PF02463 RecF/RecN/SMC N terminal domain ATY42_11620 PF01281 Ribosomal protein L9, N-terminal domain ATY42_11620 PF03948 Ribosomal protein L9, C-terminal domain ATY42_11625 PF01084 Ribosomal protein S18 ATY42_11630 PF01250 Ribosomal protein S6 ATY42_11635 PF01521 Iron-sulphur cluster biosynthesis ATY42_11640 PF01336 OB-fold nucleic acid binding domain ATY42_11640 PF00152 tRNA synthetases class II (D, K and N) ATY42_11670 PF00484 Carbonic anhydrase ATY42_11675 PF06052 3-hydroxyanthranilic acid dioxygenase ATY42_11685 PF00266 Aminotransferase class-V ATY42_11690 PF01494 FAD binding domain ATY42_11695 PF00929 Exonuclease ATY42_11695 PF08411 Exonuclease C-terminal ATY42_11705 PF00248 Aldo/keto reductase family ATY42_11720 PF01513 ATP-NAD kinase ATY42_11725 PF01170 Putative RNA methylase family UPF0020 ATY42_11725 PF02926 THUMP domain ATY42_11725 PF10672 S-adenosylmethionine-dependent methyltransferase ATY42_11730 PF12848 ABC transporter ATY42_11730 PF00005 ABC transporter ATY42_11735 PF00005 ABC transporter ATY42_11740 PF00005 ABC transporter ATY42_11770 PF00581 Rhodanese-like domain ATY42_11775 PF00293 NUDIX domain ATY42_11780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY42_11780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ATY42_11785 PF00378 Enoyl-CoA hydratase/isomerase ATY42_11795 PF10576 Iron-sulfur binding domain of endonuclease III ATY42_11795 PF00633 Helix-hairpin-helix motif ATY42_11795 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY42_11805 PF00484 Carbonic anhydrase ATY42_11810 PF01609 Transposase DDE domain ATY42_11810 PF05598 Transposase domain (DUF772) ATY42_11825 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_11840 PF12849 PBP superfamily domain ATY42_11845 PF12849 PBP superfamily domain ATY42_11850 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_11855 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_11860 PF00005 ABC transporter ATY42_11865 PF01895 PhoU domain ATY42_11875 PF00929 Exonuclease ATY42_11890 PF00872 Transposase, Mutator family ATY42_11915 PF13495 Phage integrase, N-terminal SAM-like domain ATY42_11915 PF00589 Phage integrase family ATY42_11920 PF02355 Protein export membrane protein ATY42_11920 PF07549 SecD/SecF GG Motif ATY42_11925 PF13721 SecD export protein N-terminal TM region ATY42_11925 PF02355 Protein export membrane protein ATY42_11925 PF07549 SecD/SecF GG Motif ATY42_11930 PF02699 Preprotein translocase subunit ATY42_11935 PF01702 Queuine tRNA-ribosyltransferase ATY42_11940 PF02547 Queuosine biosynthesis protein ATY42_11975 PF05598 Transposase domain (DUF772) ATY42_12005 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_12025 PF00037 4Fe-4S binding domain ATY42_12040 PF01467 Cytidylyltransferase-like ATY42_12050 PF00183 Hsp90 protein ATY42_12050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_12070 PF00899 ThiF family ATY42_12085 PF05598 Transposase domain (DUF772) ATY42_12105 PF13936 Helix-turn-helix domain ATY42_12105 PF00665 Integrase core domain ATY42_12110 PF05598 Transposase domain (DUF772) ATY42_12110 PF01609 Transposase DDE domain ATY42_12140 PF03453 MoeA N-terminal region (domain I and II) ATY42_12140 PF03454 MoeA C-terminal region (domain IV) ATY42_12140 PF00994 Probable molybdopterin binding domain ATY42_12145 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ATY42_12145 PF01926 50S ribosome-binding GTPase ATY42_12150 PF01011 PQQ enzyme repeat ATY42_12150 PF13360 PQQ-like domain ATY42_12160 PF13464 Domain of unknown function (DUF4115) ATY42_12170 PF04055 Radical SAM superfamily ATY42_12175 PF00334 Nucleoside diphosphate kinase ATY42_12185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATY42_12185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ATY42_12185 PF00378 Enoyl-CoA hydratase/isomerase ATY42_12190 PF02803 Thiolase, C-terminal domain ATY42_12190 PF00108 Thiolase, N-terminal domain ATY42_12195 PF00654 Voltage gated chloride channel ATY42_12205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ATY42_12215 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_12215 PF16193 AAA C-terminal domain ATY42_12215 PF12002 MgsA AAA+ ATPase C terminal ATY42_12225 PF03548 Outer membrane lipoprotein carrier protein LolA ATY42_12235 PF09397 Ftsk gamma domain ATY42_12235 PF17854 FtsK alpha domain ATY42_12235 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ATY42_12235 PF01580 FtsK/SpoIIIE family ATY42_12240 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_12260 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ATY42_12265 PF01176 Translation initiation factor 1A / IF-1 ATY42_12270 PF17871 AAA lid domain ATY42_12270 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_12270 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_12270 PF02861 Clp amino terminal domain, pathogenicity island component ATY42_12270 PF07724 AAA domain (Cdc48 subfamily) ATY42_12275 PF02617 ATP-dependent Clp protease adaptor protein ClpS ATY42_12280 PF00293 NUDIX domain ATY42_12290 PF04356 Protein of unknown function (DUF489) ATY42_12295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_12295 PF12729 Four helix bundle sensory module for signal transduction ATY42_12295 PF00672 HAMP domain ATY42_12310 PF00563 EAL domain ATY42_12310 PF00990 Diguanylate cyclase, GGDEF domain ATY42_12310 PF08447 PAS fold ATY42_12310 PF08448 PAS fold ATY42_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_12315 PF07730 Histidine kinase ATY42_12320 PF00990 Diguanylate cyclase, GGDEF domain ATY42_12320 PF00563 EAL domain ATY42_12320 PF03707 Bacterial signalling protein N terminal repeat ATY42_12325 PF13426 PAS domain ATY42_12325 PF00989 PAS fold ATY42_12325 PF00512 His Kinase A (phospho-acceptor) domain ATY42_12325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_12325 PF13188 PAS domain ATY42_12345 PF00072 Response regulator receiver domain ATY42_12345 PF01584 CheW-like domain ATY42_12355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY42_12355 PF00460 Flagella basal body rod protein ATY42_12360 PF03963 Flagellar hook capping protein - N-terminal region ATY42_12365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY42_12365 PF07559 Flagellar basal body protein FlaE ATY42_12365 PF00460 Flagella basal body rod protein ATY42_12370 PF00460 Flagella basal body rod protein ATY42_12370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY42_12375 PF00460 Flagella basal body rod protein ATY42_12375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY42_12380 PF02107 Flagellar L-ring protein ATY42_12385 PF02119 Flagellar P-ring protein ATY42_12390 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ATY42_12390 PF10135 Rod binding protein ATY42_12395 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ATY42_12395 PF07196 Flagellin hook IN motif ATY42_12405 PF00669 Bacterial flagellin N-terminal helical region ATY42_12405 PF00700 Bacterial flagellin C-terminal helical region ATY42_12410 PF07196 Flagellin hook IN motif ATY42_12410 PF07195 Flagellar hook-associated protein 2 C-terminus ATY42_12410 PF02465 Flagellar hook-associated protein 2 N-terminus ATY42_12415 PF02561 Flagellar protein FliS ATY42_12430 PF00196 Bacterial regulatory proteins, luxR family ATY42_12430 PF00072 Response regulator receiver domain ATY42_12435 PF04963 Sigma-54 factor, core binding domain ATY42_12435 PF04552 Sigma-54, DNA binding domain ATY42_12435 PF00309 Sigma-54 factor, Activator interacting domain (AID) ATY42_12440 PF00072 Response regulator receiver domain ATY42_12440 PF01339 CheB methylesterase ATY42_12445 PF00158 Sigma-54 interaction domain ATY42_12445 PF02954 Bacterial regulatory protein, Fis family ATY42_12445 PF00072 Response regulator receiver domain ATY42_12450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY42_12460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY42_12460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY42_12495 PF00535 Glycosyl transferase family 2 ATY42_12495 PF00534 Glycosyl transferases group 1 ATY42_12500 PF02049 Flagellar hook-basal body complex protein FliE ATY42_12505 PF08345 Flagellar M-ring protein C-terminal ATY42_12505 PF01514 Secretory protein of YscJ/FliF family ATY42_12510 PF14841 FliG middle domain ATY42_12510 PF01706 FliG C-terminal domain ATY42_12510 PF14842 FliG N-terminal domain ATY42_12520 PF18269 T3SS EscN ATPase C-terminal domain ATY42_12520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY42_12540 PF02154 Flagellar motor switch protein FliM ATY42_12540 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY42_12545 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ATY42_12550 PF04347 Flagellar biosynthesis protein, FliO ATY42_12555 PF00813 FliP family ATY42_12560 PF01313 Bacterial export proteins, family 3 ATY42_12565 PF01311 Bacterial export proteins, family 1 ATY42_12570 PF00990 Diguanylate cyclase, GGDEF domain ATY42_12570 PF13188 PAS domain ATY42_12570 PF03707 Bacterial signalling protein N terminal repeat ATY42_12570 PF00563 EAL domain ATY42_12575 PF00990 Diguanylate cyclase, GGDEF domain ATY42_12575 PF03707 Bacterial signalling protein N terminal repeat ATY42_12575 PF13188 PAS domain ATY42_12575 PF00563 EAL domain ATY42_12580 PF03707 Bacterial signalling protein N terminal repeat ATY42_12580 PF00990 Diguanylate cyclase, GGDEF domain ATY42_12580 PF00563 EAL domain ATY42_12585 PF01312 FlhB HrpN YscU SpaS Family ATY42_12590 PF00771 FHIPEP family ATY42_12595 PF00448 SRP54-type protein, GTPase domain ATY42_12600 PF10609 NUBPL iron-transfer P-loop NTPase ATY42_12605 PF04539 Sigma-70 region 3 ATY42_12605 PF04545 Sigma-70, region 4 ATY42_12605 PF04542 Sigma-70 region 2 ATY42_12610 PF00072 Response regulator receiver domain ATY42_12615 PF04344 Chemotaxis phosphatase, CheZ ATY42_12620 PF07194 P2 response regulator binding domain ATY42_12620 PF01627 Hpt domain ATY42_12620 PF02895 Signal transducing histidine kinase, homodimeric domain ATY42_12620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_12620 PF01584 CheW-like domain ATY42_12635 PF13936 Helix-turn-helix domain ATY42_12635 PF00665 Integrase core domain ATY42_12650 PF05598 Transposase domain (DUF772) ATY42_12650 PF01609 Transposase DDE domain ATY42_12675 PF00873 AcrB/AcrD/AcrF family ATY42_12695 PF00034 Cytochrome c ATY42_12745 PF05598 Transposase domain (DUF772) ATY42_12745 PF01609 Transposase DDE domain ATY42_12750 PF00005 ABC transporter ATY42_12750 PF00664 ABC transporter transmembrane region ATY42_12755 PF00664 ABC transporter transmembrane region ATY42_12755 PF00005 ABC transporter ATY42_12760 PF01654 Cytochrome bd terminal oxidase subunit I ATY42_12765 PF01654 Cytochrome bd terminal oxidase subunit I ATY42_12770 PF02322 Cytochrome bd terminal oxidase subunit II ATY42_12790 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ATY42_12790 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ATY42_12795 PF00171 Aldehyde dehydrogenase family ATY42_12800 PF01472 PUA domain ATY42_12800 PF00696 Amino acid kinase family ATY42_12815 PF00206 Lyase ATY42_12820 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY42_12830 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase ATY42_12830 PF00696 Amino acid kinase family ATY42_12835 PF07687 Peptidase dimerisation domain ATY42_12835 PF01546 Peptidase family M20/M25/M40 ATY42_12845 PF00764 Arginosuccinate synthase ATY42_12850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ATY42_12850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ATY42_12860 PF01406 tRNA synthetases class I (C) catalytic domain ATY42_12860 PF09190 DALR domain ATY42_12865 PF02657 Fe-S metabolism associated domain ATY42_12880 PF01258 Prokaryotic dksA/traR C4-type zinc finger ATY42_12890 PF01809 Putative membrane protein insertion efficiency factor ATY42_12895 PF01979 Amidohydrolase family ATY42_12900 PF08460 Bacterial SH3 domain ATY42_12900 PF01551 Peptidase family M23 ATY42_12905 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ATY42_12910 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_12935 PF01609 Transposase DDE domain ATY42_12935 PF05598 Transposase domain (DUF772) ATY42_12945 PF01095 Pectinesterase ATY42_12965 PF00295 Glycosyl hydrolases family 28 ATY42_12975 PF13419 Haloacid dehalogenase-like hydrolase ATY42_12985 PF01979 Amidohydrolase family ATY42_12995 PF01132 Elongation factor P (EF-P) OB domain ATY42_12995 PF09285 Elongation factor P, C-terminal ATY42_12995 PF08207 Elongation factor P (EF-P) KOW-like domain ATY42_13000 PF04055 Radical SAM superfamily ATY42_13005 PF00563 EAL domain ATY42_13005 PF00990 Diguanylate cyclase, GGDEF domain ATY42_13005 PF13188 PAS domain ATY42_13005 PF03707 Bacterial signalling protein N terminal repeat ATY42_13015 PF00588 SpoU rRNA Methylase family ATY42_13020 PF00459 Inositol monophosphatase family ATY42_13025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY42_13025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY42_13030 PF00545 ribonuclease ATY42_13050 PF00271 Helicase conserved C-terminal domain ATY42_13050 PF03880 DbpA RNA binding domain ATY42_13050 PF00270 DEAD/DEAH box helicase ATY42_13055 PF00156 Phosphoribosyl transferase domain ATY42_13060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ATY42_13070 PF14497 Glutathione S-transferase, C-terminal domain ATY42_13070 PF02798 Glutathione S-transferase, N-terminal domain ATY42_13075 PF00313 'Cold-shock' DNA-binding domain ATY42_13080 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ATY42_13085 PF07152 YaeQ protein ATY42_13095 PF00072 Response regulator receiver domain ATY42_13095 PF00990 Diguanylate cyclase, GGDEF domain ATY42_13095 PF00563 EAL domain ATY42_13100 PF01435 Peptidase family M48 ATY42_13105 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY42_13110 PF00106 short chain dehydrogenase ATY42_13115 PF05233 PHB accumulation regulatory domain ATY42_13115 PF07879 PHB/PHA accumulation regulator DNA-binding domain ATY42_13130 PF08676 MutL C terminal dimerisation domain ATY42_13130 PF01119 DNA mismatch repair protein, C-terminal domain ATY42_13135 PF11741 AMIN domain ATY42_13135 PF01520 N-acetylmuramoyl-L-alanine amidase ATY42_13140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATY42_13145 PF03853 YjeF-related protein N-terminus ATY42_13145 PF01256 Carbohydrate kinase ATY42_13150 PF08331 Domain of unknown function (DUF1730) ATY42_13160 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_13165 PF13742 OB-fold nucleic acid binding domain ATY42_13165 PF02601 Exonuclease VII, large subunit ATY42_13180 PF03781 Sulfatase-modifying factor enzyme 1 ATY42_13185 PF00570 HRDC domain ATY42_13185 PF01612 3'-5' exonuclease ATY42_13225 PF14850 DNA-binding domain of Proline dehydrogenase ATY42_13225 PF00171 Aldehyde dehydrogenase family ATY42_13225 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY42_13225 PF01619 Proline dehydrogenase ATY42_13230 PF00872 Transposase, Mutator family ATY42_13260 PF04386 Stringent starvation protein B ATY42_13265 PF02798 Glutathione S-transferase, N-terminal domain ATY42_13265 PF00043 Glutathione S-transferase, C-terminal domain ATY42_13270 PF02167 Cytochrome C1 family ATY42_13275 PF00033 Cytochrome b/b6/petB ATY42_13275 PF00032 Cytochrome b(C-terminal)/b6/petD ATY42_13280 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ATY42_13280 PF00355 Rieske [2Fe-2S] domain ATY42_13285 PF01464 Transglycosylase SLT domain ATY42_13305 PF00919 Uncharacterized protein family UPF0004 ATY42_13305 PF04055 Radical SAM superfamily ATY42_13305 PF01938 TRAM domain ATY42_13310 PF02562 PhoH-like protein ATY42_13320 PF02130 Uncharacterized protein family UPF0054 ATY42_13330 PF03471 Transporter associated domain ATY42_13330 PF00571 CBS domain ATY42_13345 PF00171 Aldehyde dehydrogenase family ATY42_13355 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_13370 PF02321 Outer membrane efflux protein ATY42_13375 PF07690 Major Facilitator Superfamily ATY42_13380 PF13533 Biotin-lipoyl like ATY42_13390 PF00120 Glutamine synthetase, catalytic domain ATY42_13400 PF00120 Glutamine synthetase, catalytic domain ATY42_13405 PF01266 FAD dependent oxidoreductase ATY42_13410 PF00990 Diguanylate cyclase, GGDEF domain ATY42_13410 PF00072 Response regulator receiver domain ATY42_13415 PF00083 Sugar (and other) transporter ATY42_13415 PF07690 Major Facilitator Superfamily ATY42_13425 PF00384 Molybdopterin oxidoreductase ATY42_13430 PF02634 FdhD/NarQ family ATY42_13435 PF07690 Major Facilitator Superfamily ATY42_13445 PF00202 Aminotransferase class-III ATY42_13450 PF00005 ABC transporter ATY42_13460 PF04286 Protein of unknown function (DUF445) ATY42_13465 PF00512 His Kinase A (phospho-acceptor) domain ATY42_13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_13465 PF01627 Hpt domain ATY42_13465 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ATY42_13465 PF00672 HAMP domain ATY42_13465 PF00072 Response regulator receiver domain ATY42_13470 PF00072 Response regulator receiver domain ATY42_13475 PF01609 Transposase DDE domain ATY42_13475 PF05598 Transposase domain (DUF772) ATY42_13480 PF05088 Bacterial NAD-glutamate dehydrogenase ATY42_13490 PF00529 HlyD membrane-fusion protein of T1SS ATY42_13490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_13495 PF00873 AcrB/AcrD/AcrF family ATY42_13510 PF13006 Insertion element 4 transposase N-terminal ATY42_13510 PF01609 Transposase DDE domain ATY42_13515 PF00356 Bacterial regulatory proteins, lacI family ATY42_13520 PF00391 PEP-utilising enzyme, mobile domain ATY42_13520 PF05524 PEP-utilising enzyme, N-terminal ATY42_13520 PF02896 PEP-utilising enzyme, TIM barrel domain ATY42_13520 PF00381 PTS HPr component phosphorylation site ATY42_13520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ATY42_13525 PF00294 pfkB family carbohydrate kinase ATY42_13530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ATY42_13545 PF01609 Transposase DDE domain ATY42_13545 PF05598 Transposase domain (DUF772) ATY42_13600 PF13276 HTH-like domain ATY42_13600 PF00665 Integrase core domain ATY42_13600 PF13333 Integrase core domain ATY42_13610 PF04717 Type VI secretion system, phage-baseplate injector ATY42_13610 PF16671 Actin cross-linking domain ATY42_13620 PF13333 Integrase core domain ATY42_13620 PF00665 Integrase core domain ATY42_13620 PF13276 HTH-like domain ATY42_13630 PF04717 Type VI secretion system, phage-baseplate injector ATY42_13630 PF16671 Actin cross-linking domain ATY42_13670 PF01609 Transposase DDE domain ATY42_13670 PF05598 Transposase domain (DUF772) ATY42_13700 PF07715 TonB-dependent Receptor Plug Domain ATY42_13700 PF00593 TonB dependent receptor ATY42_13710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY42_13710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY42_13730 PF01618 MotA/TolQ/ExbB proton channel family ATY42_13735 PF00691 OmpA family ATY42_13735 PF13677 Membrane MotB of proton-channel complex MotA/MotB ATY42_13740 PF13614 AAA domain ATY42_13745 PF01584 CheW-like domain ATY42_13755 PF00072 Response regulator receiver domain ATY42_13760 PF01627 Hpt domain ATY42_13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_13760 PF02895 Signal transducing histidine kinase, homodimeric domain ATY42_13760 PF09078 CheY binding ATY42_13760 PF01584 CheW-like domain ATY42_13785 PF00672 HAMP domain ATY42_13785 PF02203 Tar ligand binding domain homologue ATY42_13785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13795 PF00672 HAMP domain ATY42_13795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13795 PF02203 Tar ligand binding domain homologue ATY42_13800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13800 PF02203 Tar ligand binding domain homologue ATY42_13800 PF00672 HAMP domain ATY42_13805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13805 PF02203 Tar ligand binding domain homologue ATY42_13805 PF00672 HAMP domain ATY42_13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13810 PF00672 HAMP domain ATY42_13810 PF02203 Tar ligand binding domain homologue ATY42_13815 PF02203 Tar ligand binding domain homologue ATY42_13815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13815 PF00672 HAMP domain ATY42_13820 PF07317 Flagellar regulator YcgR ATY42_13820 PF07238 PilZ domain ATY42_13825 PF01584 CheW-like domain ATY42_13845 PF02203 Tar ligand binding domain homologue ATY42_13845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_13845 PF00672 HAMP domain ATY42_13850 PF01739 CheR methyltransferase, SAM binding domain ATY42_13850 PF03705 CheR methyltransferase, all-alpha domain ATY42_13855 PF03975 CheD chemotactic sensory transduction ATY42_13860 PF01339 CheB methylesterase ATY42_13860 PF00072 Response regulator receiver domain ATY42_13865 PF00563 EAL domain ATY42_13865 PF03707 Bacterial signalling protein N terminal repeat ATY42_13865 PF00990 Diguanylate cyclase, GGDEF domain ATY42_13870 PF00561 alpha/beta hydrolase fold ATY42_13875 PF00330 Aconitase family (aconitate hydratase) ATY42_13875 PF06434 Aconitate hydratase 2 N-terminus ATY42_13875 PF11791 Aconitate B N-terminal domain ATY42_13890 PF00694 Aconitase C-terminal domain ATY42_13890 PF00330 Aconitase family (aconitate hydratase) ATY42_13900 PF13193 AMP-binding enzyme C-terminal domain ATY42_13900 PF00501 AMP-binding enzyme ATY42_13905 PF00378 Enoyl-CoA hydratase/isomerase ATY42_13910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_13910 PF00072 Response regulator receiver domain ATY42_13910 PF01627 Hpt domain ATY42_13910 PF00512 His Kinase A (phospho-acceptor) domain ATY42_13920 PF00072 Response regulator receiver domain ATY42_13925 PF01336 OB-fold nucleic acid binding domain ATY42_13925 PF00152 tRNA synthetases class II (D, K and N) ATY42_13930 PF03462 PCRF domain ATY42_13930 PF00472 RF-1 domain ATY42_13945 PF13542 Helix-turn-helix domain of transposase family ISL3 ATY42_13945 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ATY42_13945 PF01610 Transposase ATY42_13960 PF17768 RecJ OB domain ATY42_13960 PF02272 DHHA1 domain ATY42_13960 PF01368 DHH family ATY42_13970 PF03449 Transcription elongation factor, N-terminal ATY42_13970 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY42_13975 PF02142 MGS-like domain ATY42_13975 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATY42_13975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY42_13985 PF00117 Glutamine amidotransferase class-I ATY42_13985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ATY42_13990 PF05173 Dihydrodipicolinate reductase, C-terminus ATY42_13990 PF01113 Dihydrodipicolinate reductase, N-terminus ATY42_14000 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_14005 PF03475 3-alpha domain ATY42_14005 PF03473 MOSC domain ATY42_14010 PF00155 Aminotransferase class I and II ATY42_14030 PF02421 Ferrous iron transport protein B ATY42_14030 PF07670 Nucleoside recognition ATY42_14030 PF07664 Ferrous iron transport protein B C terminus ATY42_14040 PF00378 Enoyl-CoA hydratase/isomerase ATY42_14050 PF00682 HMGL-like ATY42_14055 PF00106 short chain dehydrogenase ATY42_14060 PF08207 Elongation factor P (EF-P) KOW-like domain ATY42_14060 PF09285 Elongation factor P, C-terminal ATY42_14060 PF01132 Elongation factor P (EF-P) OB domain ATY42_14075 PF13936 Helix-turn-helix domain ATY42_14075 PF00665 Integrase core domain ATY42_14085 PF00083 Sugar (and other) transporter ATY42_14095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ATY42_14095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ATY42_14110 PF16338 Domain of unknown function (DUF4968) ATY42_14110 PF01055 Glycosyl hydrolases family 31 ATY42_14110 PF17137 Domain of unknown function (DUF5110) ATY42_14120 PF03466 LysR substrate binding domain ATY42_14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_14125 PF01081 KDPG and KHG aldolase ATY42_14130 PF13378 Enolase C-terminal domain-like ATY42_14130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY42_14135 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY42_14140 PF05035 2-keto-3-deoxy-galactonokinase ATY42_14145 PF11953 Domain of unknown function (DUF3470) ATY42_14145 PF00037 4Fe-4S binding domain ATY42_14155 PF00701 Dihydrodipicolinate synthetase family ATY42_14170 PF00578 AhpC/TSA family ATY42_14175 PF13638 PIN domain ATY42_14175 PF02562 PhoH-like protein ATY42_14185 PF08543 Phosphomethylpyrimidine kinase ATY42_14215 PF03466 LysR substrate binding domain ATY42_14215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_14220 PF02678 Pirin ATY42_14220 PF17954 Quercetinase C-terminal cupin domain ATY42_14245 PF03796 DnaB-like helicase C terminal domain ATY42_14245 PF00772 DnaB-like helicase N terminal domain ATY42_14265 PF02599 Global regulator protein family ATY42_14270 PF02272 DHHA1 domain ATY42_14270 PF01411 tRNA synthetases class II (A) ATY42_14270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY42_14275 PF02631 RecX family ATY42_14280 PF00154 recA bacterial DNA recombination protein ATY42_14285 PF01726 LexA DNA binding domain ATY42_14285 PF00717 Peptidase S24-like ATY42_14290 PF03109 ABC1 family ATY42_14295 PF02464 Competence-damaged protein ATY42_14300 PF16360 GTP-binding GTPase Middle Region ATY42_14300 PF01926 50S ribosome-binding GTPase ATY42_14300 PF13167 GTP-binding GTPase N-terminal ATY42_14305 PF17209 Hfq protein ATY42_14315 PF00809 Pterin binding enzyme ATY42_14320 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_14320 PF06480 FtsH Extracellular ATY42_14320 PF01434 Peptidase family M41 ATY42_14320 PF17862 AAA+ lid domain ATY42_14325 PF01728 FtsJ-like methyltransferase ATY42_14330 PF01985 CRS1 / YhbY (CRM) domain ATY42_14340 PF01551 Peptidase family M23 ATY42_14340 PF01476 LysM domain ATY42_14345 PF09335 SNARE associated Golgi protein ATY42_14355 PF01975 Survival protein SurE ATY42_14360 PF01713 Smr domain ATY42_14365 PF01142 tRNA pseudouridine synthase D (TruD) ATY42_14370 PF02542 YgbB family ATY42_14375 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ATY42_14380 PF04977 Septum formation initiator ATY42_14385 PF00113 Enolase, C-terminal TIM barrel domain ATY42_14385 PF03952 Enolase, N-terminal domain ATY42_14395 PF00793 DAHP synthetase I family ATY42_14400 PF06418 CTP synthase N-terminus ATY42_14400 PF00117 Glutamine amidotransferase class-I ATY42_14410 PF00986 DNA gyrase B subunit, carboxyl terminus ATY42_14410 PF00204 DNA gyrase B ATY42_14410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_14410 PF01751 Toprim domain ATY42_14425 PF02698 DUF218 domain ATY42_14430 PF01384 Phosphate transporter family ATY42_14440 PF00571 CBS domain ATY42_14440 PF03471 Transporter associated domain ATY42_14440 PF01595 Cyclin M transmembrane N-terminal domain ATY42_14455 PF00296 Luciferase-like monooxygenase ATY42_14460 PF07690 Major Facilitator Superfamily ATY42_14465 PF00664 ABC transporter transmembrane region ATY42_14465 PF00005 ABC transporter ATY42_14470 PF00005 ABC transporter ATY42_14490 PF13579 Glycosyl transferase 4-like domain ATY42_14490 PF00534 Glycosyl transferases group 1 ATY42_14510 PF08241 Methyltransferase domain ATY42_14525 PF00535 Glycosyl transferase family 2 ATY42_14530 PF01943 Polysaccharide biosynthesis protein ATY42_14535 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ATY42_14555 PF05523 WxcM-like, C-terminal ATY42_14570 PF00034 Cytochrome c ATY42_14580 PF08281 Sigma-70, region 4 ATY42_14580 PF04542 Sigma-70 region 2 ATY42_14590 PF00082 Subtilase family ATY42_14595 PF01578 Cytochrome C assembly protein ATY42_14600 PF04995 Heme exporter protein D (CcmD) ATY42_14605 PF03100 CcmE ATY42_14610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ATY42_14610 PF01578 Cytochrome C assembly protein ATY42_14615 PF08534 Redoxin ATY42_14620 PF03918 Cytochrome C biogenesis protein ATY42_14645 PF03377 TAL effector repeat ATY42_14685 PF03377 TAL effector repeat ATY42_14690 PF00873 AcrB/AcrD/AcrF family ATY42_14700 PF00873 AcrB/AcrD/AcrF family ATY42_14705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_14705 PF00529 HlyD membrane-fusion protein of T1SS ATY42_14735 PF01527 Transposase ATY42_14740 PF13276 HTH-like domain ATY42_14750 PF01526 Tn3 transposase DDE domain ATY42_14750 PF13700 Domain of unknown function (DUF4158) ATY42_14755 PF00486 Transcriptional regulatory protein, C terminal ATY42_14755 PF00072 Response regulator receiver domain ATY42_14760 PF03150 Di-haem cytochrome c peroxidase ATY42_14760 PF00034 Cytochrome c ATY42_14765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_14765 PF00512 His Kinase A (phospho-acceptor) domain ATY42_14770 PF03466 LysR substrate binding domain ATY42_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_14800 PF00069 Protein kinase domain ATY42_14840 PF16671 Actin cross-linking domain ATY42_14840 PF04717 Type VI secretion system, phage-baseplate injector ATY42_14850 PF05598 Transposase domain (DUF772) ATY42_14850 PF01609 Transposase DDE domain ATY42_14860 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_14860 PF17871 AAA lid domain ATY42_14860 PF07724 AAA domain (Cdc48 subfamily) ATY42_14860 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_14885 PF05638 Type VI secretion system effector, Hcp ATY42_14905 PF05598 Transposase domain (DUF772) ATY42_14905 PF01609 Transposase DDE domain ATY42_14920 PF01609 Transposase DDE domain ATY42_14920 PF05598 Transposase domain (DUF772) ATY42_14950 PF13276 HTH-like domain ATY42_14950 PF13683 Integrase core domain ATY42_14960 PF01106 NifU-like domain ATY42_14965 PF01329 Pterin 4 alpha carbinolamine dehydratase ATY42_14975 PF02535 ZIP Zinc transporter ATY42_14980 PF02535 ZIP Zinc transporter ATY42_14990 PF00849 RNA pseudouridylate synthase ATY42_14990 PF01479 S4 domain ATY42_14995 PF10150 Ribonuclease E/G family ATY42_14995 PF00575 S1 RNA binding domain ATY42_14995 PF12111 Polyribonucleotide phosphorylase C terminal ATY42_15010 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_15015 PF00072 Response regulator receiver domain ATY42_15015 PF00196 Bacterial regulatory proteins, luxR family ATY42_15025 PF01609 Transposase DDE domain ATY42_15025 PF05598 Transposase domain (DUF772) ATY42_15035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY42_15045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ATY42_15045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ATY42_15045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ATY42_15055 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ATY42_15055 PF01648 4'-phosphopantetheinyl transferase superfamily ATY42_15085 PF01609 Transposase DDE domain ATY42_15085 PF05598 Transposase domain (DUF772) ATY42_15115 PF00072 Response regulator receiver domain ATY42_15115 PF03861 ANTAR domain ATY42_15125 PF14824 Sirohaem biosynthesis protein central ATY42_15125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY42_15125 PF10414 Sirohaem synthase dimerisation region ATY42_15150 PF12804 MobA-like NTP transferase domain ATY42_15155 PF03454 MoeA C-terminal region (domain IV) ATY42_15155 PF00994 Probable molybdopterin binding domain ATY42_15155 PF03453 MoeA N-terminal region (domain I and II) ATY42_15215 PF00593 TonB dependent receptor ATY42_15215 PF07715 TonB-dependent Receptor Plug Domain ATY42_15235 PF04616 Glycosyl hydrolases family 43 ATY42_15240 PF07532 Bacterial Ig-like domain (group 4) ATY42_15245 PF07715 TonB-dependent Receptor Plug Domain ATY42_15245 PF00593 TonB dependent receptor ATY42_15255 PF09286 Pro-kumamolisin, activation domain ATY42_15255 PF00082 Subtilase family ATY42_15295 PF13520 Amino acid permease ATY42_15310 PF00557 Metallopeptidase family M24 ATY42_15310 PF01321 Creatinase/Prolidase N-terminal domain ATY42_15315 PF00171 Aldehyde dehydrogenase family ATY42_15320 PF00701 Dihydrodipicolinate synthetase family ATY42_15325 PF04324 BFD-like [2Fe-2S] binding domain ATY42_15325 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_15335 PF01266 FAD dependent oxidoreductase ATY42_15340 PF05544 Proline racemase ATY42_15350 PF00448 SRP54-type protein, GTPase domain ATY42_15350 PF02881 SRP54-type protein, helical bundle domain ATY42_15360 PF14815 NUDIX domain ATY42_15360 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY42_15360 PF00633 Helix-hairpin-helix motif ATY42_15365 PF04362 Bacterial Fe(2+) trafficking ATY42_15370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_15370 PF00072 Response regulator receiver domain ATY42_15370 PF13426 PAS domain ATY42_15375 PF05598 Transposase domain (DUF772) ATY42_15475 PF03808 Glycosyl transferase WecB/TagA/CpsF family ATY42_15490 PF14667 Polysaccharide biosynthesis C-terminal domain ATY42_15500 PF13439 Glycosyltransferase Family 4 ATY42_15500 PF00534 Glycosyl transferases group 1 ATY42_15520 PF02397 Bacterial sugar transferase ATY42_15540 PF13411 MerR HTH family regulatory protein ATY42_15545 PF00216 Bacterial DNA-binding protein ATY42_15550 PF03147 Ferredoxin-fold anticodon binding domain ATY42_15550 PF01588 Putative tRNA binding domain ATY42_15550 PF03484 tRNA synthetase B5 domain ATY42_15550 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ATY42_15550 PF03483 B3/4 domain ATY42_15555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ATY42_15555 PF01409 tRNA synthetases class II core domain (F) ATY42_15560 PF00453 Ribosomal protein L20 ATY42_15565 PF01632 Ribosomal protein L35 ATY42_15570 PF05198 Translation initiation factor IF-3, N-terminal domain ATY42_15570 PF00707 Translation initiation factor IF-3, C-terminal domain ATY42_15575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ATY42_15575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ATY42_15575 PF02824 TGS domain ATY42_15575 PF03129 Anticodon binding domain ATY42_15585 PF01527 Transposase ATY42_15605 PF12344 Ultra-violet resistance protein B ATY42_15605 PF02151 UvrB/uvrC motif ATY42_15605 PF04851 Type III restriction enzyme, res subunit ATY42_15605 PF00271 Helicase conserved C-terminal domain ATY42_15605 PF17757 UvrB interaction domain ATY42_15610 PF00114 Pilin (bacterial filament) ATY42_15610 PF07963 Prokaryotic N-terminal methylation motif ATY42_15620 PF00114 Pilin (bacterial filament) ATY42_15620 PF07963 Prokaryotic N-terminal methylation motif ATY42_15625 PF05567 Neisseria PilC beta-propeller domain ATY42_15645 PF07963 Prokaryotic N-terminal methylation motif ATY42_15645 PF12019 Type II transport protein GspH ATY42_15650 PF11892 Domain of unknown function (DUF3412) ATY42_15650 PF03641 Possible lysine decarboxylase ATY42_15650 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ATY42_15655 PF00593 TonB dependent receptor ATY42_15660 PF01914 MarC family integral membrane protein ATY42_15670 PF00462 Glutaredoxin ATY42_15675 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ATY42_15675 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ATY42_15680 PF02222 ATP-grasp domain ATY42_15680 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATY42_15685 PF00731 AIR carboxylase ATY42_15695 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ATY42_15695 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ATY42_15705 PF01138 3' exoribonuclease family, domain 1 ATY42_15705 PF03725 3' exoribonuclease family, domain 2 ATY42_15705 PF00575 S1 RNA binding domain ATY42_15705 PF00013 KH domain ATY42_15705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ATY42_15710 PF00312 Ribosomal protein S15 ATY42_15715 PF16198 tRNA pseudouridylate synthase B C-terminal domain ATY42_15715 PF01509 TruB family pseudouridylate synthase (N terminal domain) ATY42_15715 PF09157 Pseudouridine synthase II TruB, C-terminal ATY42_15720 PF02033 Ribosome-binding factor A ATY42_15725 PF00009 Elongation factor Tu GTP binding domain ATY42_15725 PF11987 Translation-initiation factor 2 ATY42_15725 PF04760 Translation initiation factor IF-2, N-terminal region ATY42_15725 PF08364 Bacterial translation initiation factor IF-2 associated region ATY42_15730 PF00575 S1 RNA binding domain ATY42_15730 PF13184 NusA-like KH domain ATY42_15730 PF08529 NusA N-terminal domain ATY42_15735 PF02576 RimP N-terminal domain ATY42_15735 PF17384 RimP C-terminal SH3 domain ATY42_15745 PF00361 Proton-conducting membrane transporter ATY42_15750 PF00361 Proton-conducting membrane transporter ATY42_15750 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ATY42_15755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY42_15755 PF00361 Proton-conducting membrane transporter ATY42_15760 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY42_15765 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ATY42_15770 PF12838 4Fe-4S dicluster domain ATY42_15775 PF00146 NADH dehydrogenase ATY42_15780 PF00384 Molybdopterin oxidoreductase ATY42_15780 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ATY42_15780 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ATY42_15785 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ATY42_15785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ATY42_15785 PF10531 SLBB domain ATY42_15795 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ATY42_15800 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ATY42_15805 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ATY42_15810 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ATY42_15825 PF00121 Triosephosphate isomerase ATY42_15845 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_15855 PF00563 EAL domain ATY42_15855 PF00990 Diguanylate cyclase, GGDEF domain ATY42_15855 PF03707 Bacterial signalling protein N terminal repeat ATY42_15870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ATY42_15870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ATY42_15870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ATY42_15870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ATY42_15875 PF01039 Carboxyl transferase domain ATY42_15875 PF17848 Acetyl-coA carboxylase zinc finger domain ATY42_15880 PF00290 Tryptophan synthase alpha chain ATY42_15890 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_15895 PF03466 LysR substrate binding domain ATY42_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_15900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ATY42_15905 PF01416 tRNA pseudouridine synthase ATY42_15920 PF01118 Semialdehyde dehydrogenase, NAD binding domain ATY42_15920 PF02774 Semialdehyde dehydrogenase, dimerisation domain ATY42_15925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY42_15925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY42_15930 PF01264 Chorismate synthase ATY42_15935 PF05175 Methyltransferase small domain ATY42_15940 PF02630 SCO1/SenC ATY42_15945 PF02666 Phosphatidylserine decarboxylase ATY42_15955 PF05872 Bacterial protein of unknown function (DUF853) ATY42_15960 PF00665 Integrase core domain ATY42_15960 PF13936 Helix-turn-helix domain ATY42_15975 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY42_15975 PF03449 Transcription elongation factor, N-terminal ATY42_15980 PF18693 TRAM domain ATY42_15980 PF04055 Radical SAM superfamily ATY42_15980 PF00919 Uncharacterized protein family UPF0004 ATY42_15985 PF01738 Dienelactone hydrolase family ATY42_16000 PF00692 dUTPase ATY42_16005 PF10609 NUBPL iron-transfer P-loop NTPase ATY42_16040 PF01266 FAD dependent oxidoreductase ATY42_16045 PF04235 Protein of unknown function (DUF418) ATY42_16050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ATY42_16055 PF00877 NlpC/P60 family ATY42_16060 PF00877 NlpC/P60 family ATY42_16075 PF00375 Sodium:dicarboxylate symporter family ATY42_16080 PF00245 Alkaline phosphatase ATY42_16085 PF01171 PP-loop family ATY42_16085 PF09179 TilS substrate binding domain ATY42_16085 PF11734 TilS substrate C-terminal domain ATY42_16090 PF02609 Exonuclease VII small subunit ATY42_16095 PF00348 Polyprenyl synthetase ATY42_16115 PF01523 Putative modulator of DNA gyrase ATY42_16120 PF04751 Protein of unknown function (DUF615) ATY42_16125 PF01523 Putative modulator of DNA gyrase ATY42_16130 PF13116 Protein of unknown function ATY42_16130 PF13502 AsmA-like C-terminal region ATY42_16135 PF00575 S1 RNA binding domain ATY42_16135 PF10150 Ribonuclease E/G family ATY42_16140 PF02545 Maf-like protein ATY42_16145 PF04402 Protein of unknown function (DUF541) ATY42_16160 PF02590 Predicted SPOUT methyltransferase ATY42_16185 PF01467 Cytidylyltransferase-like ATY42_16200 PF08264 Anticodon-binding domain of tRNA ATY42_16200 PF00133 tRNA synthetases class I (I, L, M and V) ATY42_16200 PF13603 Leucyl-tRNA synthetase, Domain 2 ATY42_16210 PF00085 Thioredoxin ATY42_16225 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_16275 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_16285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ATY42_16285 PF00128 Alpha amylase, catalytic domain ATY42_16290 PF05598 Transposase domain (DUF772) ATY42_16290 PF01609 Transposase DDE domain ATY42_16295 PF01609 Transposase DDE domain ATY42_16295 PF05598 Transposase domain (DUF772) ATY42_16330 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_16335 PF00665 Integrase core domain ATY42_16335 PF13936 Helix-turn-helix domain ATY42_16360 PF13683 Integrase core domain ATY42_16360 PF13276 HTH-like domain ATY42_16370 PF01527 Transposase ATY42_16395 PF00657 GDSL-like Lipase/Acylhydrolase ATY42_16395 PF03797 Autotransporter beta-domain ATY42_16405 PF05690 Thiazole biosynthesis protein ThiG ATY42_16410 PF02390 Putative methyltransferase ATY42_16415 PF03600 Citrate transporter ATY42_16415 PF02080 TrkA-C domain ATY42_16445 PF13936 Helix-turn-helix domain ATY42_16445 PF00665 Integrase core domain ATY42_16450 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY42_16455 PF01741 Large-conductance mechanosensitive channel, MscL ATY42_16465 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_16475 PF00135 Carboxylesterase family ATY42_16480 PF08032 RNA 2'-O ribose methyltransferase substrate binding ATY42_16480 PF00588 SpoU rRNA Methylase family ATY42_16510 PF11838 ERAP1-like C-terminal domain ATY42_16510 PF01433 Peptidase family M1 domain ATY42_16515 PF00873 AcrB/AcrD/AcrF family ATY42_16520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_16520 PF00529 HlyD membrane-fusion protein of T1SS ATY42_16525 PF00009 Elongation factor Tu GTP binding domain ATY42_16530 PF01507 Phosphoadenosine phosphosulfate reductase family ATY42_16535 PF00667 FAD binding domain ATY42_16535 PF00258 Flavodoxin ATY42_16535 PF00175 Oxidoreductase NAD-binding domain ATY42_16540 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ATY42_16540 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ATY42_16545 PF01507 Phosphoadenosine phosphosulfate reductase family ATY42_16565 PF01627 Hpt domain ATY42_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_16565 PF00512 His Kinase A (phospho-acceptor) domain ATY42_16565 PF00672 HAMP domain ATY42_16565 PF00072 Response regulator receiver domain ATY42_16575 PF03466 LysR substrate binding domain ATY42_16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_16580 PF10414 Sirohaem synthase dimerisation region ATY42_16580 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY42_16580 PF14824 Sirohaem biosynthesis protein central ATY42_16585 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_16600 PF01661 Macro domain ATY42_16605 PF00274 Fructose-bisphosphate aldolase class-I ATY42_16610 PF00224 Pyruvate kinase, barrel domain ATY42_16610 PF02887 Pyruvate kinase, alpha/beta domain ATY42_16620 PF00162 Phosphoglycerate kinase ATY42_16650 PF06628 Catalase-related immune-responsive ATY42_16650 PF18011 C-terminal domain found in long catalases ATY42_16650 PF00199 Catalase ATY42_16665 PF05598 Transposase domain (DUF772) ATY42_16665 PF01609 Transposase DDE domain ATY42_16685 PF12833 Helix-turn-helix domain ATY42_16685 PF02311 AraC-like ligand binding domain ATY42_16705 PF05598 Transposase domain (DUF772) ATY42_16720 PF07676 WD40-like Beta Propeller Repeat ATY42_16720 PF00326 Prolyl oligopeptidase family ATY42_16720 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ATY42_16740 PF01609 Transposase DDE domain ATY42_16740 PF05598 Transposase domain (DUF772) ATY42_16745 PF03169 OPT oligopeptide transporter protein ATY42_16760 PF02811 PHP domain ATY42_16760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ATY42_16760 PF07733 Bacterial DNA polymerase III alpha NTPase domain ATY42_16760 PF14579 Helix-hairpin-helix motif ATY42_16775 PF01726 LexA DNA binding domain ATY42_16775 PF00717 Peptidase S24-like ATY42_16805 PF00300 Histidine phosphatase superfamily (branch 1) ATY42_16805 PF13456 Reverse transcriptase-like ATY42_16845 PF18766 SWI2/SNF2 ATPase ATY42_16845 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY42_16845 PF11867 Domain of unknown function (DUF3387) ATY42_16860 PF01909 Nucleotidyltransferase domain ATY42_16865 PF08780 Nucleotidyltransferase substrate binding protein like ATY42_16870 PF02384 N-6 DNA Methylase ATY42_16890 PF00271 Helicase conserved C-terminal domain ATY42_16890 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ATY42_16890 PF08463 EcoEI R protein C-terminal ATY42_16890 PF04851 Type III restriction enzyme, res subunit ATY42_16900 PF02384 N-6 DNA Methylase ATY42_16905 PF01420 Type I restriction modification DNA specificity domain ATY42_16960 PF16671 Actin cross-linking domain ATY42_16960 PF04717 Type VI secretion system, phage-baseplate injector ATY42_16970 PF07724 AAA domain (Cdc48 subfamily) ATY42_16970 PF17871 AAA lid domain ATY42_16970 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_16970 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_17025 PF04717 Type VI secretion system, phage-baseplate injector ATY42_17025 PF16671 Actin cross-linking domain ATY42_17030 PF16671 Actin cross-linking domain ATY42_17030 PF04717 Type VI secretion system, phage-baseplate injector ATY42_17055 PF04717 Type VI secretion system, phage-baseplate injector ATY42_17060 PF03781 Sulfatase-modifying factor enzyme 1 ATY42_17125 PF05598 Transposase domain (DUF772) ATY42_17125 PF01609 Transposase DDE domain ATY42_17130 PF05598 Transposase domain (DUF772) ATY42_17130 PF01609 Transposase DDE domain ATY42_17140 PF03781 Sulfatase-modifying factor enzyme 1 ATY42_17150 PF04717 Type VI secretion system, phage-baseplate injector ATY42_17165 PF00691 OmpA family ATY42_17165 PF04972 BON domain ATY42_17200 PF01527 Transposase ATY42_17205 PF02222 ATP-grasp domain ATY42_17230 PF00730 HhH-GPD superfamily base excision DNA repair protein ATY42_17255 PF00072 Response regulator receiver domain ATY42_17255 PF00196 Bacterial regulatory proteins, luxR family ATY42_17260 PF07730 Histidine kinase ATY42_17270 PF05209 Septum formation inhibitor MinC, N-terminal domain ATY42_17270 PF03775 Septum formation inhibitor MinC, C-terminal domain ATY42_17275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ATY42_17280 PF03776 Septum formation topological specificity factor MinE ATY42_17290 PF00512 His Kinase A (phospho-acceptor) domain ATY42_17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_17290 PF08521 Two-component sensor kinase N-terminal ATY42_17295 PF00486 Transcriptional regulatory protein, C terminal ATY42_17295 PF00072 Response regulator receiver domain ATY42_17300 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ATY42_17310 PF00884 Sulfatase ATY42_17310 PF08019 Phosphoethanolamine transferase EptA/EptB ATY42_17330 PF00664 ABC transporter transmembrane region ATY42_17330 PF00005 ABC transporter ATY42_17330 PF03412 Peptidase C39 family ATY42_17350 PF02347 Glycine cleavage system P-protein ATY42_17385 PF01527 Transposase ATY42_17395 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_17410 PF01196 Ribosomal protein L17 ATY42_17415 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ATY42_17415 PF01000 RNA polymerase Rpb3/RpoA insert domain ATY42_17415 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ATY42_17420 PF01479 S4 domain ATY42_17420 PF00163 Ribosomal protein S4/S9 N-terminal domain ATY42_17425 PF00411 Ribosomal protein S11 ATY42_17430 PF00416 Ribosomal protein S13/S18 ATY42_17435 PF00344 SecY translocase ATY42_17440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ATY42_17445 PF00327 Ribosomal protein L30p/L7e ATY42_17450 PF00333 Ribosomal protein S5, N-terminal domain ATY42_17450 PF03719 Ribosomal protein S5, C-terminal domain ATY42_17455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ATY42_17460 PF00347 Ribosomal protein L6 ATY42_17465 PF00410 Ribosomal protein S8 ATY42_17470 PF00253 Ribosomal protein S14p/S29e ATY42_17475 PF00673 ribosomal L5P family C-terminus ATY42_17475 PF00281 Ribosomal protein L5 ATY42_17480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ATY42_17480 PF00467 KOW motif ATY42_17485 PF00238 Ribosomal protein L14p/L23e ATY42_17490 PF00366 Ribosomal protein S17 ATY42_17495 PF00831 Ribosomal L29 protein ATY42_17500 PF00252 Ribosomal protein L16p/L10e ATY42_17505 PF07650 KH domain ATY42_17505 PF00189 Ribosomal protein S3, C-terminal domain ATY42_17510 PF00237 Ribosomal protein L22p/L17e ATY42_17515 PF00203 Ribosomal protein S19 ATY42_17520 PF00181 Ribosomal Proteins L2, RNA binding domain ATY42_17520 PF03947 Ribosomal Proteins L2, C-terminal domain ATY42_17525 PF00276 Ribosomal protein L23 ATY42_17530 PF00573 Ribosomal protein L4/L1 family ATY42_17535 PF00297 Ribosomal protein L3 ATY42_17540 PF00338 Ribosomal protein S10p/S20e ATY42_17545 PF03143 Elongation factor Tu C-terminal domain ATY42_17545 PF03144 Elongation factor Tu domain 2 ATY42_17545 PF00009 Elongation factor Tu GTP binding domain ATY42_17550 PF14492 Elongation Factor G, domain II ATY42_17550 PF00679 Elongation factor G C-terminus ATY42_17550 PF03764 Elongation factor G, domain IV ATY42_17550 PF00009 Elongation factor Tu GTP binding domain ATY42_17550 PF03144 Elongation factor Tu domain 2 ATY42_17555 PF00177 Ribosomal protein S7p/S5e ATY42_17560 PF00164 Ribosomal protein S12/S23 ATY42_17565 PF00623 RNA polymerase Rpb1, domain 2 ATY42_17565 PF04998 RNA polymerase Rpb1, domain 5 ATY42_17565 PF04997 RNA polymerase Rpb1, domain 1 ATY42_17565 PF04983 RNA polymerase Rpb1, domain 3 ATY42_17565 PF05000 RNA polymerase Rpb1, domain 4 ATY42_17570 PF10385 RNA polymerase beta subunit external 1 domain ATY42_17570 PF04560 RNA polymerase Rpb2, domain 7 ATY42_17570 PF04565 RNA polymerase Rpb2, domain 3 ATY42_17570 PF00562 RNA polymerase Rpb2, domain 6 ATY42_17570 PF04563 RNA polymerase beta subunit ATY42_17570 PF04561 RNA polymerase Rpb2, domain 2 ATY42_17575 PF16320 Ribosomal protein L7/L12 dimerisation domain ATY42_17575 PF00542 Ribosomal protein L7/L12 C-terminal domain ATY42_17580 PF00466 Ribosomal protein L10 ATY42_17585 PF00687 Ribosomal protein L1p/L10e family ATY42_17590 PF03946 Ribosomal protein L11, N-terminal domain ATY42_17590 PF00298 Ribosomal protein L11, RNA binding domain ATY42_17595 PF02357 Transcription termination factor nusG ATY42_17595 PF00467 KOW motif ATY42_17600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ATY42_17610 PF03144 Elongation factor Tu domain 2 ATY42_17610 PF03143 Elongation factor Tu C-terminal domain ATY42_17610 PF00009 Elongation factor Tu GTP binding domain ATY42_17630 PF01926 50S ribosome-binding GTPase ATY42_17630 PF06071 Protein of unknown function (DUF933) ATY42_17635 PF01195 Peptidyl-tRNA hydrolase ATY42_17640 PF01386 Ribosomal L25p family ATY42_17640 PF14693 Ribosomal protein TL5, C-terminal domain ATY42_17645 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ATY42_17645 PF14572 Phosphoribosyl synthetase-associated domain ATY42_17655 PF08544 GHMP kinases C terminal ATY42_17655 PF00288 GHMP kinases N terminal domain ATY42_17660 PF03550 Outer membrane lipoprotein LolB ATY42_17670 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ATY42_17670 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ATY42_17670 PF01488 Shikimate / quinate 5-dehydrogenase ATY42_17675 PF03462 PCRF domain ATY42_17675 PF00472 RF-1 domain ATY42_17685 PF00994 Probable molybdopterin binding domain ATY42_17690 PF03976 Polyphosphate kinase 2 (PPK2) ATY42_17700 PF00708 Acylphosphatase ATY42_17705 PF08534 Redoxin ATY42_17710 PF03631 Virulence factor BrkB ATY42_17715 PF03358 NADPH-dependent FMN reductase ATY42_17725 PF17189 Glycosyl hydrolase family 30 beta sandwich domain ATY42_17725 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain ATY42_17735 PF04073 Aminoacyl-tRNA editing domain ATY42_17745 PF01063 Amino-transferase class IV ATY42_17775 PF02233 NAD(P) transhydrogenase beta subunit ATY42_17780 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY42_17800 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ATY42_17800 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ATY42_17800 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ATY42_17815 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY42_17815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY42_17815 PF01612 3'-5' exonuclease ATY42_17815 PF00476 DNA polymerase family A ATY42_17820 PF00293 NUDIX domain ATY42_17830 PF00561 alpha/beta hydrolase fold ATY42_17860 PF05175 Methyltransferase small domain ATY42_17860 PF17827 PrmC N-terminal domain ATY42_17865 PF10417 C-terminal domain of 1-Cys peroxiredoxin ATY42_17865 PF00578 AhpC/TSA family ATY42_17870 PF13192 Thioredoxin domain ATY42_17870 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_17875 PF03466 LysR substrate binding domain ATY42_17875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_17880 PF03449 Transcription elongation factor, N-terminal ATY42_17880 PF01272 Transcription elongation factor, GreA/GreB, C-term ATY42_17885 PF00923 Transaldolase/Fructose-6-phosphate aldolase ATY42_17905 PF01625 Peptide methionine sulfoxide reductase ATY42_17940 PF00462 Glutaredoxin ATY42_17945 PF01435 Peptidase family M48 ATY42_17945 PF13181 Tetratricopeptide repeat ATY42_17950 PF00072 Response regulator receiver domain ATY42_17950 PF00486 Transcriptional regulatory protein, C terminal ATY42_17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_17955 PF00512 His Kinase A (phospho-acceptor) domain ATY42_17955 PF00989 PAS fold ATY42_17955 PF11808 Phosphate regulon sensor protein PhoR ATY42_17960 PF13089 Polyphosphate kinase N-terminal domain ATY42_17960 PF13090 Polyphosphate kinase C-terminal domain 2 ATY42_17960 PF17941 Polyphosphate kinase C-terminal domain 1 ATY42_17960 PF02503 Polyphosphate kinase middle domain ATY42_17965 PF02541 Ppx/GppA phosphatase family ATY42_17970 PF13439 Glycosyltransferase Family 4 ATY42_17970 PF00534 Glycosyl transferases group 1 ATY42_17975 PF01569 PAP2 superfamily ATY42_17980 PF00149 Calcineurin-like phosphoesterase ATY42_17990 PF04305 Protein of unknown function (DUF455) ATY42_17995 PF00156 Phosphoribosyl transferase domain ATY42_18010 PF02875 Mur ligase family, glutamate ligase domain ATY42_18010 PF08245 Mur ligase middle domain ATY42_18015 PF00300 Histidine phosphatase superfamily (branch 1) ATY42_18020 PF10459 Peptidase S46 ATY42_18025 PF05506 Domain of unknown function (DUF756) ATY42_18025 PF04185 Phosphoesterase family ATY42_18035 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_18035 PF00107 Zinc-binding dehydrogenase ATY42_18045 PF12857 TOBE-like domain ATY42_18045 PF00005 ABC transporter ATY42_18045 PF17850 CysA C-terminal regulatory domain ATY42_18050 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_18055 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_18065 PF00155 Aminotransferase class I and II ATY42_18075 PF00849 RNA pseudouridylate synthase ATY42_18085 PF00691 OmpA family ATY42_18085 PF05736 OprF membrane domain ATY42_18090 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_18090 PF00107 Zinc-binding dehydrogenase ATY42_18095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY42_18095 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_18105 PF01527 Transposase ATY42_18135 PF17149 Periplasmic sensor domain found in signal transduction proteins ATY42_18135 PF00072 Response regulator receiver domain ATY42_18135 PF00672 HAMP domain ATY42_18135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_18135 PF00512 His Kinase A (phospho-acceptor) domain ATY42_18135 PF01627 Hpt domain ATY42_18140 PF00990 Diguanylate cyclase, GGDEF domain ATY42_18140 PF00072 Response regulator receiver domain ATY42_18160 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ATY42_18160 PF00749 tRNA synthetases class I (E and Q), catalytic domain ATY42_18170 PF13936 Helix-turn-helix domain ATY42_18170 PF00665 Integrase core domain ATY42_18180 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_18215 PF01728 FtsJ-like methyltransferase ATY42_18215 PF18125 RlmM ferredoxin-like domain ATY42_18220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY42_18220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY42_18225 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY42_18245 PF00378 Enoyl-CoA hydratase/isomerase ATY42_18250 PF00171 Aldehyde dehydrogenase family ATY42_18255 PF00501 AMP-binding enzyme ATY42_18255 PF13193 AMP-binding enzyme C-terminal domain ATY42_18260 PF03466 LysR substrate binding domain ATY42_18260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_18270 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ATY42_18300 PF01494 FAD binding domain ATY42_18305 PF01494 FAD binding domain ATY42_18315 PF01923 Cobalamin adenosyltransferase ATY42_18320 PF00850 Histone deacetylase domain ATY42_18325 PF04453 LPS transport system D ATY42_18325 PF03968 OstA-like protein ATY42_18330 PF00639 PPIC-type PPIASE domain ATY42_18330 PF09312 SurA N-terminal domain ATY42_18335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ATY42_18340 PF00398 Ribosomal RNA adenine dimethylase ATY42_18345 PF04379 ApaG domain ATY42_18350 PF00149 Calcineurin-like phosphoesterase ATY42_18355 PF00186 Dihydrofolate reductase ATY42_18365 PF00303 Thymidylate synthase ATY42_18370 PF01790 Prolipoprotein diacylglyceryl transferase ATY42_18390 PF01219 Prokaryotic diacylglycerol kinase ATY42_18400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_18400 PF08521 Two-component sensor kinase N-terminal ATY42_18400 PF00512 His Kinase A (phospho-acceptor) domain ATY42_18405 PF00486 Transcriptional regulatory protein, C terminal ATY42_18405 PF00072 Response regulator receiver domain ATY42_18410 PF13472 GDSL-like Lipase/Acylhydrolase family ATY42_18415 PF00005 ABC transporter ATY42_18425 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ATY42_18435 PF00005 ABC transporter ATY42_18460 PF00248 Aldo/keto reductase family ATY42_18470 PF07662 Na+ dependent nucleoside transporter C-terminus ATY42_18470 PF07670 Nucleoside recognition ATY42_18470 PF01773 Na+ dependent nucleoside transporter N-terminus ATY42_18475 PF00294 pfkB family carbohydrate kinase ATY42_18490 PF01207 Dihydrouridine synthase (Dus) ATY42_18495 PF13649 Methyltransferase domain ATY42_18505 PF00438 S-adenosylmethionine synthetase, N-terminal domain ATY42_18505 PF02773 S-adenosylmethionine synthetase, C-terminal domain ATY42_18505 PF02772 S-adenosylmethionine synthetase, central domain ATY42_18515 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_18520 PF00328 Histidine phosphatase superfamily (branch 2) ATY42_18545 PF00311 Phosphoenolpyruvate carboxylase ATY42_18555 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ATY42_18555 PF05221 S-adenosyl-L-homocysteine hydrolase ATY42_18560 PF13649 Methyltransferase domain ATY42_18590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY42_18605 PF09286 Pro-kumamolisin, activation domain ATY42_18605 PF00082 Subtilase family ATY42_18610 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_18610 PF14765 Polyketide synthase dehydratase ATY42_18610 PF00109 Beta-ketoacyl synthase, N-terminal domain ATY42_18610 PF16197 Ketoacyl-synthetase C-terminal extension ATY42_18610 PF00107 Zinc-binding dehydrogenase ATY42_18610 PF08659 KR domain ATY42_18610 PF00698 Acyl transferase domain ATY42_18610 PF02801 Beta-ketoacyl synthase, C-terminal domain ATY42_18610 PF00550 Phosphopantetheine attachment site ATY42_18620 PF02219 Methylenetetrahydrofolate reductase ATY42_18635 PF00293 NUDIX domain ATY42_18645 PF07516 SecA Wing and Scaffold domain ATY42_18645 PF01043 SecA preprotein cross-linking domain ATY42_18645 PF02810 SEC-C motif ATY42_18645 PF07517 SecA DEAD-like domain ATY42_18650 PF01476 LysM domain ATY42_18650 PF01551 Peptidase family M23 ATY42_18660 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ATY42_18665 PF00091 Tubulin/FtsZ family, GTPase domain ATY42_18665 PF12327 FtsZ family, C-terminal domain ATY42_18670 PF02491 SHS2 domain inserted in FTSA ATY42_18675 PF08478 POTRA domain, FtsQ-type ATY42_18675 PF03799 Cell division protein FtsQ ATY42_18680 PF07478 D-ala D-ala ligase C-terminus ATY42_18680 PF01820 D-ala D-ala ligase N-terminus ATY42_18685 PF01225 Mur ligase family, catalytic domain ATY42_18685 PF02875 Mur ligase family, glutamate ligase domain ATY42_18685 PF08245 Mur ligase middle domain ATY42_18690 PF04101 Glycosyltransferase family 28 C-terminal domain ATY42_18690 PF03033 Glycosyltransferase family 28 N-terminal domain ATY42_18695 PF01098 Cell cycle protein ATY42_18700 PF00953 Glycosyl transferase family 4 ATY42_18705 PF01225 Mur ligase family, catalytic domain ATY42_18705 PF02875 Mur ligase family, glutamate ligase domain ATY42_18705 PF08245 Mur ligase middle domain ATY42_18710 PF02875 Mur ligase family, glutamate ligase domain ATY42_18710 PF08245 Mur ligase middle domain ATY42_18710 PF01225 Mur ligase family, catalytic domain ATY42_18715 PF03717 Penicillin-binding Protein dimerisation domain ATY42_18715 PF00905 Penicillin binding protein transpeptidase domain ATY42_18720 PF04999 Cell division protein FtsL ATY42_18725 PF01795 MraW methylase family ATY42_18730 PF02381 MraZ protein, putative antitoxin-like ATY42_18745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ATY42_18755 PF02021 Uncharacterised protein family UPF0102 ATY42_18760 PF04307 LexA-binding, inner membrane-associated putative hydrolase ATY42_18765 PF01565 FAD binding domain ATY42_18765 PF02913 FAD linked oxidases, C-terminal domain ATY42_18770 PF00072 Response regulator receiver domain ATY42_18770 PF00486 Transcriptional regulatory protein, C terminal ATY42_18775 PF13493 Domain of unknown function (DUF4118) ATY42_18775 PF13492 GAF domain ATY42_18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_18775 PF02702 Osmosensitive K+ channel His kinase sensor domain ATY42_18775 PF00512 His Kinase A (phospho-acceptor) domain ATY42_18780 PF02669 K+-transporting ATPase, c chain ATY42_18790 PF03814 Potassium-transporting ATPase A subunit ATY42_18815 PF00586 AIR synthase related protein, N-terminal domain ATY42_18815 PF02769 AIR synthase related protein, C-terminal domain ATY42_18820 PF01029 NusB family ATY42_18825 PF00885 6,7-dimethyl-8-ribityllumazine synthase ATY42_18830 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ATY42_18830 PF00925 GTP cyclohydrolase II ATY42_18835 PF00677 Lumazine binding domain ATY42_18845 PF01872 RibD C-terminal domain ATY42_18845 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ATY42_18855 PF03477 ATP cone domain ATY42_18865 PF00464 Serine hydroxymethyltransferase ATY42_18885 PF00005 ABC transporter ATY42_18885 PF12848 ABC transporter ATY42_18905 PF00756 Putative esterase ATY42_18915 PF00107 Zinc-binding dehydrogenase ATY42_18915 PF08240 Alcohol dehydrogenase GroES-like domain ATY42_18920 PF02583 Metal-sensitive transcriptional repressor ATY42_18930 PF00072 Response regulator receiver domain ATY42_18930 PF00486 Transcriptional regulatory protein, C terminal ATY42_18935 PF00672 HAMP domain ATY42_18935 PF16527 Two-component sensor protein CpxA, periplasmic domain ATY42_18935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_18935 PF00512 His Kinase A (phospho-acceptor) domain ATY42_18970 PF04107 Glutamate-cysteine ligase family 2(GCS2) ATY42_18985 PF01926 50S ribosome-binding GTPase ATY42_18990 PF00034 Cytochrome c ATY42_19010 PF02028 BCCT, betaine/carnitine/choline family transporter ATY42_19020 PF01527 Transposase ATY42_19025 PF05598 Transposase domain (DUF772) ATY42_19025 PF01609 Transposase DDE domain ATY42_19030 PF13291 ACT domain ATY42_19030 PF00291 Pyridoxal-phosphate dependent enzyme ATY42_19035 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_19045 PF05598 Transposase domain (DUF772) ATY42_19045 PF01609 Transposase DDE domain ATY42_19050 PF01527 Transposase ATY42_19070 PF01966 HD domain ATY42_19070 PF12627 Probable RNA and SrmB- binding site of polymerase A ATY42_19070 PF01743 Poly A polymerase head domain ATY42_19085 PF05598 Transposase domain (DUF772) ATY42_19085 PF01609 Transposase DDE domain ATY42_19090 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_19125 PF01522 Polysaccharide deacetylase ATY42_19125 PF14883 Hypothetical glycosyl hydrolase family 13 ATY42_19130 PF00535 Glycosyl transferase family 2 ATY42_19140 PF01979 Amidohydrolase family ATY42_19145 PF01380 SIS domain ATY42_19150 PF00356 Bacterial regulatory proteins, lacI family ATY42_19155 PF07690 Major Facilitator Superfamily ATY42_19175 PF16355 Domain of unknown function (DUF4982) ATY42_19175 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ATY42_19175 PF00703 Glycosyl hydrolases family 2 ATY42_19175 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ATY42_19175 PF02837 Glycosyl hydrolases family 2, sugar binding domain ATY42_19210 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ATY42_19215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_19215 PF00512 His Kinase A (phospho-acceptor) domain ATY42_19220 PF00072 Response regulator receiver domain ATY42_19225 PF01590 GAF domain ATY42_19225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_19225 PF00360 Phytochrome region ATY42_19225 PF00512 His Kinase A (phospho-acceptor) domain ATY42_19225 PF08446 PAS fold ATY42_19230 PF04972 BON domain ATY42_19235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ATY42_19235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ATY42_19240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY42_19240 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ATY42_19280 PF01467 Cytidylyltransferase-like ATY42_19280 PF00293 NUDIX domain ATY42_19290 PF03572 Peptidase family S41 ATY42_19290 PF00595 PDZ domain ATY42_19290 PF11818 C-terminal domain of tail specific protease (DUF3340) ATY42_19290 PF17804 Tail specific protease N-terminal domain ATY42_19295 PF04055 Radical SAM superfamily ATY42_19295 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ATY42_19300 PF03099 Biotin/lipoate A/B protein ligase family ATY42_19305 PF04359 Protein of unknown function (DUF493) ATY42_19315 PF07943 Penicillin-binding protein 5, C-terminal domain ATY42_19315 PF00768 D-alanyl-D-alanine carboxypeptidase ATY42_19325 PF03330 Lytic transglycolase ATY42_19325 PF05036 Sporulation related domain ATY42_19330 PF13406 Transglycosylase SLT domain ATY42_19365 PF01098 Cell cycle protein ATY42_19370 PF00905 Penicillin binding protein transpeptidase domain ATY42_19370 PF03717 Penicillin-binding Protein dimerisation domain ATY42_19380 PF04085 rod shape-determining protein MreC ATY42_19390 PF00294 pfkB family carbohydrate kinase ATY42_19410 PF13673 Acetyltransferase (GNAT) domain ATY42_19425 PF13533 Biotin-lipoyl like ATY42_19435 PF01209 ubiE/COQ5 methyltransferase family ATY42_19440 PF00990 Diguanylate cyclase, GGDEF domain ATY42_19440 PF17152 Periplasmic sensor domain ATY42_19445 PF11838 ERAP1-like C-terminal domain ATY42_19445 PF01433 Peptidase family M1 domain ATY42_19460 PF10431 C-terminal, D2-small domain, of ClpB protein ATY42_19460 PF00004 ATPase family associated with various cellular activities (AAA) ATY42_19460 PF07724 AAA domain (Cdc48 subfamily) ATY42_19465 PF00227 Proteasome subunit ATY42_19470 PF02899 Phage integrase, N-terminal SAM-like domain ATY42_19470 PF00589 Phage integrase family ATY42_19480 PF01678 Diaminopimelate epimerase ATY42_19495 PF00326 Prolyl oligopeptidase family ATY42_19495 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY42_19500 PF00155 Aminotransferase class I and II ATY42_19510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ATY42_19510 PF00326 Prolyl oligopeptidase family ATY42_19535 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ATY42_19535 PF03900 Porphobilinogen deaminase, C-terminal domain ATY42_19540 PF04397 LytTr DNA-binding domain ATY42_19540 PF00072 Response regulator receiver domain ATY42_19545 PF06580 Histidine kinase ATY42_19545 PF07694 5TMR of 5TMR-LYT ATY42_19555 PF13632 Glycosyl transferase family group 2 ATY42_19565 PF08448 PAS fold ATY42_19565 PF00990 Diguanylate cyclase, GGDEF domain ATY42_19575 PF01740 STAS domain ATY42_19575 PF00916 Sulfate permease family ATY42_19580 PF00150 Cellulase (glycosyl hydrolase family 5) ATY42_19580 PF00553 Cellulose binding domain ATY42_19590 PF00672 HAMP domain ATY42_19590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ATY42_19590 PF02203 Tar ligand binding domain homologue ATY42_19595 PF00990 Diguanylate cyclase, GGDEF domain ATY42_19595 PF03707 Bacterial signalling protein N terminal repeat ATY42_19595 PF00563 EAL domain ATY42_19620 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_19640 PF01204 Trehalase ATY42_19660 PF01544 CorA-like Mg2+ transporter protein ATY42_19670 PF00324 Amino acid permease ATY42_19675 PF00553 Cellulose binding domain ATY42_19675 PF00041 Fibronectin type III domain ATY42_19675 PF01341 Glycosyl hydrolases family 6 ATY42_19680 PF03330 Lytic transglycolase ATY42_19685 PF00892 EamA-like transporter family ATY42_19710 PF07759 Protein of unknown function (DUF1615) ATY42_19745 PF00106 short chain dehydrogenase ATY42_19760 PF01527 Transposase ATY42_19770 PF04715 Anthranilate synthase component I, N terminal region ATY42_19770 PF00425 chorismate binding enzyme ATY42_19775 PF00781 Diacylglycerol kinase catalytic domain ATY42_19780 PF00583 Acetyltransferase (GNAT) family ATY42_19785 PF00834 Ribulose-phosphate 3 epimerase family ATY42_19790 PF05099 Tellurite resistance protein TerB ATY42_19790 PF00226 DnaJ domain ATY42_19810 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY42_19810 PF01483 Proprotein convertase P-domain ATY42_19810 PF01447 Thermolysin metallopeptidase, catalytic domain ATY42_19810 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY42_19815 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY42_19815 PF01483 Proprotein convertase P-domain ATY42_19815 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY42_19815 PF01447 Thermolysin metallopeptidase, catalytic domain ATY42_19820 PF01447 Thermolysin metallopeptidase, catalytic domain ATY42_19820 PF07504 Fungalysin/Thermolysin Propeptide Motif ATY42_19820 PF02868 Thermolysin metallopeptidase, alpha-helical domain ATY42_19820 PF03413 Peptidase propeptide and YPEB domain ATY42_19835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ATY42_19835 PF00361 Proton-conducting membrane transporter ATY42_19835 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ATY42_19835 PF13244 Domain of unknown function (DUF4040) ATY42_19840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ATY42_19845 PF00361 Proton-conducting membrane transporter ATY42_19855 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ATY42_19860 PF03334 Na+/H+ antiporter subunit ATY42_19865 PF01609 Transposase DDE domain ATY42_19865 PF05598 Transposase domain (DUF772) ATY42_19870 PF04209 homogentisate 1,2-dioxygenase ATY42_19875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ATY42_19880 PF01047 MarR family ATY42_19890 PF00854 POT family ATY42_19895 PF03301 Tryptophan 2,3-dioxygenase ATY42_19930 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_19940 PF00108 Thiolase, N-terminal domain ATY42_19940 PF02803 Thiolase, C-terminal domain ATY42_19990 PF01609 Transposase DDE domain ATY42_19990 PF05598 Transposase domain (DUF772) ATY42_20020 PF01427 D-ala-D-ala dipeptidase ATY42_20025 PF01510 N-acetylmuramoyl-L-alanine amidase ATY42_20035 PF13378 Enolase C-terminal domain-like ATY42_20035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY42_20060 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_20070 PF13520 Amino acid permease ATY42_20085 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_20100 PF05360 yiaA/B two helix domain ATY42_20105 PF07995 Glucose / Sorbosone dehydrogenase ATY42_20135 PF00665 Integrase core domain ATY42_20135 PF13936 Helix-turn-helix domain ATY42_20140 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY42_20140 PF14310 Fibronectin type III-like domain ATY42_20140 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_20145 PF02152 Dihydroneopterin aldolase ATY42_20150 PF00814 Glycoprotease family ATY42_20155 PF01165 Ribosomal protein S21 ATY42_20160 PF09424 Yqey-like protein ATY42_20165 PF03631 Virulence factor BrkB ATY42_20170 PF10410 DnaB-helicase binding domain of primase ATY42_20170 PF08278 DNA primase DnaG DnaB-binding ATY42_20170 PF01807 CHC2 zinc finger ATY42_20170 PF08275 DNA primase catalytic core, N-terminal domain ATY42_20190 PF13593 SBF-like CPA transporter family (DUF4137) ATY42_20200 PF01040 UbiA prenyltransferase family ATY42_20225 PF00510 Cytochrome c oxidase subunit III ATY42_20230 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ATY42_20235 PF00115 Cytochrome C and Quinol oxidase polypeptide I ATY42_20240 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ATY42_20240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ATY42_20250 PF01619 Proline dehydrogenase ATY42_20250 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ATY42_20250 PF00171 Aldehyde dehydrogenase family ATY42_20250 PF14850 DNA-binding domain of Proline dehydrogenase ATY42_20255 PF01527 Transposase ATY42_20270 PF00210 Ferritin-like domain ATY42_20280 PF00293 NUDIX domain ATY42_20295 PF00380 Ribosomal protein S9/S16 ATY42_20300 PF00572 Ribosomal protein L13 ATY42_20305 PF03232 Ubiquinone biosynthesis protein COQ7 ATY42_20310 PF00893 Small Multidrug Resistance protein ATY42_20315 PF02675 S-adenosylmethionine decarboxylase ATY42_20320 PF00325 Bacterial regulatory proteins, crp family ATY42_20320 PF00027 Cyclic nucleotide-binding domain ATY42_20330 PF00218 Indole-3-glycerol phosphate synthase ATY42_20335 PF00591 Glycosyl transferase family, a/b domain ATY42_20335 PF02885 Glycosyl transferase family, helical bundle domain ATY42_20350 PF00117 Glutamine amidotransferase class-I ATY42_20360 PF01527 Transposase ATY42_20365 PF13683 Integrase core domain ATY42_20365 PF13276 HTH-like domain ATY42_20375 PF03971 Monomeric isocitrate dehydrogenase ATY42_20385 PF05598 Transposase domain (DUF772) ATY42_20420 PF01609 Transposase DDE domain ATY42_20420 PF05598 Transposase domain (DUF772) ATY42_20440 PF00872 Transposase, Mutator family ATY42_20445 PF14489 QueF-like protein ATY42_20445 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ATY42_20455 PF07687 Peptidase dimerisation domain ATY42_20455 PF01546 Peptidase family M20/M25/M40 ATY42_20460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ATY42_20465 PF00873 AcrB/AcrD/AcrF family ATY42_20470 PF00873 AcrB/AcrD/AcrF family ATY42_20475 PF07063 Domain of unknown function (DUF1338) ATY42_20505 PF00581 Rhodanese-like domain ATY42_20510 PF02556 Preprotein translocase subunit SecB ATY42_20515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ATY42_20515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATY42_20525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ATY42_20525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ATY42_20525 PF00205 Thiamine pyrophosphate enzyme, central domain ATY42_20530 PF00512 His Kinase A (phospho-acceptor) domain ATY42_20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_20535 PF02954 Bacterial regulatory protein, Fis family ATY42_20535 PF00158 Sigma-54 interaction domain ATY42_20535 PF00072 Response regulator receiver domain ATY42_20550 PF07690 Major Facilitator Superfamily ATY42_20555 PF00588 SpoU rRNA Methylase family ATY42_20570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ATY42_20570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ATY42_20575 PF13784 Fic/DOC family N-terminal ATY42_20575 PF02661 Fic/DOC family ATY42_20580 PF01555 DNA methylase ATY42_20590 PF00561 alpha/beta hydrolase fold ATY42_20595 PF03692 Putative zinc- or iron-chelating domain ATY42_20600 PF00501 AMP-binding enzyme ATY42_20605 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ATY42_20610 PF05598 Transposase domain (DUF772) ATY42_20620 PF01966 HD domain ATY42_20620 PF11871 Domain of unknown function (DUF3391) ATY42_20625 PF07690 Major Facilitator Superfamily ATY42_20630 PF00132 Bacterial transferase hexapeptide (six repeats) ATY42_20635 PF03692 Putative zinc- or iron-chelating domain ATY42_20640 PF00920 Dehydratase family ATY42_20645 PF13495 Phage integrase, N-terminal SAM-like domain ATY42_20645 PF00589 Phage integrase family ATY42_20650 PF05598 Transposase domain (DUF772) ATY42_20670 PF01609 Transposase DDE domain ATY42_20670 PF05598 Transposase domain (DUF772) ATY42_20685 PF01218 Coproporphyrinogen III oxidase ATY42_20690 PF00476 DNA polymerase family A ATY42_20690 PF01367 5'-3' exonuclease, C-terminal SAM fold ATY42_20690 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ATY42_20690 PF01612 3'-5' exonuclease ATY42_20700 PF13276 HTH-like domain ATY42_20700 PF13683 Integrase core domain ATY42_20705 PF01527 Transposase ATY42_20715 PF17831 Pyruvate dehydrogenase E1 component middle domain ATY42_20715 PF00456 Transketolase, thiamine diphosphate binding domain ATY42_20740 PF03377 TAL effector repeat ATY42_20750 PF05598 Transposase domain (DUF772) ATY42_20790 PF04264 YceI-like domain ATY42_20795 PF00881 Nitroreductase family ATY42_20825 PF02592 Putative vitamin uptake transporter ATY42_20830 PF08335 GlnD PII-uridylyltransferase ATY42_20830 PF03710 Glutamate-ammonia ligase adenylyltransferase ATY42_20840 PF08450 SMP-30/Gluconolactonase/LRE-like region ATY42_20885 PF00793 DAHP synthetase I family ATY42_20895 PF07715 TonB-dependent Receptor Plug Domain ATY42_20895 PF00593 TonB dependent receptor ATY42_20905 PF00118 TCP-1/cpn60 chaperonin family ATY42_20910 PF00166 Chaperonin 10 Kd subunit ATY42_20935 PF07992 Pyridine nucleotide-disulphide oxidoreductase ATY42_20945 PF04545 Sigma-70, region 4 ATY42_20945 PF04542 Sigma-70 region 2 ATY42_20950 PF03167 Uracil DNA glycosylase superfamily ATY42_20955 PF00072 Response regulator receiver domain ATY42_20955 PF01339 CheB methylesterase ATY42_20960 PF18075 FtsX extracellular domain ATY42_20965 PF00005 ABC transporter ATY42_20970 PF12300 ATP-dependent RNA helicase RhlB ATY42_20970 PF00271 Helicase conserved C-terminal domain ATY42_20970 PF00270 DEAD/DEAH box helicase ATY42_20975 PF00085 Thioredoxin ATY42_20980 PF07498 Rho termination factor, N-terminal domain ATY42_20980 PF07497 Rho termination factor, RNA-binding domain ATY42_20980 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ATY42_21000 PF17243 POTRA domain TamA domain 1 ATY42_21000 PF01103 Surface antigen ATY42_21005 PF04357 TamB, inner membrane protein subunit of TAM complex ATY42_21035 PF07977 FabA-like domain ATY42_21040 PF01553 Acyltransferase ATY42_21050 PF00550 Phosphopantetheine attachment site ATY42_21055 PF04820 Tryptophan halogenase ATY42_21105 PF01638 HxlR-like helix-turn-helix ATY42_21110 PF05368 NmrA-like family ATY42_21120 PF03812 2-keto-3-deoxygluconate permease ATY42_21125 PF08267 Cobalamin-independent synthase, N-terminal domain ATY42_21125 PF01717 Cobalamin-independent synthase, Catalytic domain ATY42_21135 PF03358 NADPH-dependent FMN reductase ATY42_21140 PF03466 LysR substrate binding domain ATY42_21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_21145 PF02677 Epoxyqueuosine reductase QueH ATY42_21155 PF00512 His Kinase A (phospho-acceptor) domain ATY42_21155 PF00672 HAMP domain ATY42_21155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_21160 PF00672 HAMP domain ATY42_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_21160 PF00512 His Kinase A (phospho-acceptor) domain ATY42_21165 PF00072 Response regulator receiver domain ATY42_21165 PF00486 Transcriptional regulatory protein, C terminal ATY42_21170 PF00551 Formyl transferase ATY42_21180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ATY42_21180 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ATY42_21185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ATY42_21190 PF02146 Sir2 family ATY42_21200 PF07690 Major Facilitator Superfamily ATY42_21205 PF03466 LysR substrate binding domain ATY42_21205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_21215 PF01026 TatD related DNase ATY42_21245 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_21265 PF00266 Aminotransferase class-V ATY42_21280 PF01014 Uricase ATY42_21280 PF09349 OHCU decarboxylase ATY42_21320 PF00665 Integrase core domain ATY42_21320 PF13936 Helix-turn-helix domain ATY42_21325 PF00326 Prolyl oligopeptidase family ATY42_21330 PF00364 Biotin-requiring enzyme ATY42_21330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ATY42_21330 PF00289 Biotin carboxylase, N-terminal domain ATY42_21330 PF02785 Biotin carboxylase C-terminal domain ATY42_21335 PF01039 Carboxyl transferase domain ATY42_21340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ATY42_21340 PF02770 Acyl-CoA dehydrogenase, middle domain ATY42_21340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ATY42_21400 PF07683 Cobalamin synthesis protein cobW C-terminal domain ATY42_21400 PF02492 CobW/HypB/UreG, nucleotide-binding domain ATY42_21420 PF03969 AFG1-like ATPase ATY42_21425 PF00664 ABC transporter transmembrane region ATY42_21425 PF00005 ABC transporter ATY42_21425 PF03412 Peptidase C39 family ATY42_21435 PF07715 TonB-dependent Receptor Plug Domain ATY42_21435 PF00593 TonB dependent receptor ATY42_21440 PF13181 Tetratricopeptide repeat ATY42_21445 PF05746 DALR anticodon binding domain ATY42_21445 PF02092 Glycyl-tRNA synthetase beta subunit ATY42_21450 PF02091 Glycyl-tRNA synthetase alpha subunit ATY42_21455 PF00437 Type II/IV secretion system protein ATY42_21455 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ATY42_21470 PF00117 Glutamine amidotransferase class-I ATY42_21470 PF00958 GMP synthase C terminal domain ATY42_21480 PF00902 Sec-independent protein translocase protein (TatC) ATY42_21485 PF02416 mttA/Hcf106 family ATY42_21490 PF02416 mttA/Hcf106 family ATY42_21500 PF00762 Ferrochelatase ATY42_21505 PF12697 Alpha/beta hydrolase family ATY42_21520 PF04381 Putative exonuclease, RdgC ATY42_21525 PF01171 PP-loop family ATY42_21535 PF00356 Bacterial regulatory proteins, lacI family ATY42_21540 PF03648 Glycosyl hydrolase family 67 N-terminus ATY42_21540 PF07477 Glycosyl hydrolase family 67 C-terminus ATY42_21540 PF07488 Glycosyl hydrolase family 67 middle domain ATY42_21550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY42_21550 PF13378 Enolase C-terminal domain-like ATY42_21555 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY42_21555 PF04616 Glycosyl hydrolases family 43 ATY42_21560 PF14310 Fibronectin type III-like domain ATY42_21560 PF00933 Glycosyl hydrolase family 3 N terminal domain ATY42_21560 PF01915 Glycosyl hydrolase family 3 C-terminal domain ATY42_21560 PF07691 PA14 domain ATY42_21565 PF08125 Mannitol dehydrogenase C-terminal domain ATY42_21565 PF01232 Mannitol dehydrogenase Rossmann domain ATY42_21585 PF02614 Glucuronate isomerase ATY42_21590 PF00331 Glycosyl hydrolase family 10 ATY42_21590 PF03422 Carbohydrate binding module (family 6) ATY42_21590 PF00553 Cellulose binding domain ATY42_21595 PF00331 Glycosyl hydrolase family 10 ATY42_21595 PF03422 Carbohydrate binding module (family 6) ATY42_21595 PF00553 Cellulose binding domain ATY42_21620 PF04616 Glycosyl hydrolases family 43 ATY42_21645 PF13340 Putative transposase of IS4/5 family (DUF4096) ATY42_21660 PF00487 Fatty acid desaturase ATY42_21665 PF00175 Oxidoreductase NAD-binding domain ATY42_21665 PF00111 2Fe-2S iron-sulfur cluster binding domain ATY42_21665 PF00970 Oxidoreductase FAD-binding domain ATY42_21670 PF00440 Bacterial regulatory proteins, tetR family ATY42_21700 PF01047 MarR family ATY42_21705 PF02566 OsmC-like protein ATY42_21785 PF01381 Helix-turn-helix ATY42_21790 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ATY42_21795 PF13538 UvrD-like helicase C-terminal domain ATY42_21800 PF13361 UvrD-like helicase C-terminal domain ATY42_21800 PF00580 UvrD/REP helicase N-terminal domain ATY42_21800 PF12705 PD-(D/E)XK nuclease superfamily ATY42_21805 PF17946 RecC C-terminal domain ATY42_21845 PF00080 Copper/zinc superoxide dismutase (SODC) ATY42_21850 PF00080 Copper/zinc superoxide dismutase (SODC) ATY42_21855 PF00158 Sigma-54 interaction domain ATY42_21855 PF02954 Bacterial regulatory protein, Fis family ATY42_21855 PF00072 Response regulator receiver domain ATY42_21860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ATY42_21860 PF00989 PAS fold ATY42_21860 PF00512 His Kinase A (phospho-acceptor) domain ATY42_21865 PF00909 Ammonium Transporter Family ATY42_21870 PF00543 Nitrogen regulatory protein P-II ATY42_21875 PF00120 Glutamine synthetase, catalytic domain ATY42_21875 PF03951 Glutamine synthetase, beta-Grasp domain ATY42_21880 PF02673 Bacitracin resistance protein BacA ATY42_21920 PF03061 Thioesterase superfamily ATY42_21925 PF13091 PLD-like domain ATY42_21940 PF10609 NUBPL iron-transfer P-loop NTPase ATY42_21940 PF01883 Iron-sulfur cluster assembly protein ATY42_21960 PF01381 Helix-turn-helix ATY42_21965 PF07804 HipA-like C-terminal domain ATY42_21965 PF13657 HipA N-terminal domain ATY42_21970 PF10017 Histidine-specific methyltransferase, SAM-dependent ATY42_21975 PF12867 DinB superfamily ATY42_21975 PF03781 Sulfatase-modifying factor enzyme 1 ATY42_21985 PF00528 Binding-protein-dependent transport system inner membrane component ATY42_21990 PF00571 CBS domain ATY42_21990 PF00005 ABC transporter ATY42_22005 PF00005 ABC transporter ATY42_22015 PF01734 Patatin-like phospholipase ATY42_22030 PF05598 Transposase domain (DUF772) ATY42_22030 PF01609 Transposase DDE domain ATY42_22035 PF13276 HTH-like domain ATY42_22035 PF13683 Integrase core domain ATY42_22040 PF01527 Transposase ATY42_22055 PF00248 Aldo/keto reductase family ATY42_22060 PF00107 Zinc-binding dehydrogenase ATY42_22060 PF16884 N-terminal domain of oxidoreductase ATY42_22065 PF00248 Aldo/keto reductase family ATY42_22075 PF00849 RNA pseudouridylate synthase ATY42_22090 PF04408 Helicase associated domain (HA2) ATY42_22090 PF00271 Helicase conserved C-terminal domain ATY42_22090 PF00270 DEAD/DEAH box helicase ATY42_22090 PF08482 ATP-dependent helicase C-terminal ATY42_22095 PF07308 Protein of unknown function (DUF1456) ATY42_22100 PF13378 Enolase C-terminal domain-like ATY42_22100 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ATY42_22105 PF01557 Fumarylacetoacetate (FAA) hydrolase family ATY42_22120 PF00248 Aldo/keto reductase family ATY42_22130 PF04616 Glycosyl hydrolases family 43 ATY42_22130 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ATY42_22150 PF00196 Bacterial regulatory proteins, luxR family ATY42_22150 PF00072 Response regulator receiver domain ATY42_22155 PF00501 AMP-binding enzyme ATY42_22155 PF13193 AMP-binding enzyme C-terminal domain ATY42_22155 PF16177 Acetyl-coenzyme A synthetase N-terminus ATY42_22170 PF04341 Protein of unknown function, DUF485 ATY42_22175 PF00474 Sodium:solute symporter family ATY42_22185 PF03372 Endonuclease/Exonuclease/phosphatase family ATY42_22195 PF04226 Transglycosylase associated protein ATY42_22200 PF01648 4'-phosphopantetheinyl transferase superfamily ATY42_22205 PF16655 PhoD-like phosphatase, N-terminal domain ATY42_22205 PF09423 PhoD-like phosphatase ATY42_22210 PF09423 PhoD-like phosphatase ATY42_22210 PF16655 PhoD-like phosphatase, N-terminal domain ATY42_22215 PF02527 rRNA small subunit methyltransferase G ATY42_22230 PF00830 Ribosomal L28 family ATY42_22235 PF00471 Ribosomal protein L33 ATY42_22255 PF04303 PrpF protein ATY42_22260 PF03737 Aldolase/RraA ATY42_22265 PF03466 LysR substrate binding domain ATY42_22265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ATY42_22270 PF13091 PLD-like domain ATY42_22270 PF13396 Phospholipase_D-nuclease N-terminal ATY42_22285 PF00580 UvrD/REP helicase N-terminal domain ATY42_22285 PF13361 UvrD-like helicase C-terminal domain ATY42_22300 PF13520 Amino acid permease ATY42_22305 PF02646 RmuC family ATY42_22315 PF00255 Glutathione peroxidase ATY42_22325 PF05598 Transposase domain (DUF772) ATY42_22340 PF04055 Radical SAM superfamily ATY42_22350 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ATY42_22365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ATY42_22365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATY42_22370 PF03572 Peptidase family S41 ATY42_22370 PF13180 PDZ domain ATY42_22375 PF01551 Peptidase family M23 ATY42_22385 PF04389 Peptidase family M28 ATY42_22400 PF05598 Transposase domain (DUF772) ATY42_22435 PF02463 RecF/RecN/SMC N terminal domain ATY42_22440 PF01227 GTP cyclohydrolase I ATY42_22465 PF00083 Sugar (and other) transporter ATY42_22540 PF02595 Glycerate kinase family ATY42_22545 PF07690 Major Facilitator Superfamily ATY42_22560 PF10672 S-adenosylmethionine-dependent methyltransferase ATY42_22560 PF17785 PUA-like domain ATY42_22565 PF03741 Integral membrane protein TerC family ATY42_22570 PF01694 Rhomboid family ATY42_22575 PF03009 Glycerophosphoryl diester phosphodiesterase family ATY42_22585 PF01569 PAP2 superfamily ATY42_22590 PF01926 50S ribosome-binding GTPase ATY42_22590 PF10396 GTP-binding protein TrmE N-terminus ATY42_22590 PF12631 MnmE helical domain ATY42_22595 PF01522 Polysaccharide deacetylase ATY42_22600 PF02096 60Kd inner membrane protein ATY42_22600 PF14849 YidC periplasmic domain ATY42_22605 PF00825 Ribonuclease P ATY42_22610 PF00468 Ribosomal protein L34