locus-tag	class	description
ATY42_00020	COG0187	DNA topoisomerase II activity
ATY42_00030	COG0501	Belongs to the peptidase M48B family
ATY42_00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY42_00090	COG4772	TonB-dependent receptor
ATY42_00100	COG3039	Transposase
ATY42_00110	COG1755	Isoprenylcysteine carboxyl methyltransferase
ATY42_00130	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY42_00145	COG3039	Transposase
ATY42_00160	COG1136	(ABC) transporter
ATY42_00180	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY42_00200	COG3039	Transposase
ATY42_00210	COG0513	Belongs to the DEAD box helicase family
ATY42_00245	COG3039	Transposase
ATY42_00295	COG1858	cytochrome C peroxidase
ATY42_00300	COG0702	epimerase
ATY42_00325	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATY42_00340	COG0745	RESPONSE REGULATOR receiver
ATY42_00340	COG3706	GGDEF domain
ATY42_00350	COG2354	Protein conserved in bacteria
ATY42_00355	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ATY42_00365	COG3293	Transposase
ATY42_00375	COG3264	Mechanosensitive ion channel
ATY42_00375	COG1511	domain protein
ATY42_00455	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY42_00550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY42_00560	COG0642	Histidine kinase
ATY42_00565	COG1090	epimerase
ATY42_00575	COG3039	Transposase
ATY42_00600	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_00645	COG3039	Transposase
ATY42_00650	COG1136	(ABC) transporter
ATY42_00665	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_00690	COG1272	protein, Hemolysin III
ATY42_00695	COG1111	helicase
ATY42_00695	COG1205	dead DEAH box helicase
ATY42_00750	COG0069	glutamate synthase activity
ATY42_00750	COG0070	glutamate synthase
ATY42_00750	COG0067	glutamate synthase
ATY42_00755	COG0493	'glutamate synthase
ATY42_00775	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_00795	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY42_00800	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
ATY42_00805	COG1609	Transcriptional regulator
ATY42_00830	COG0366	Alpha amylase catalytic
ATY42_00835	COG0366	Alpha amylase catalytic
ATY42_00840	COG2801	Transposase and inactivated derivatives
ATY42_00855	COG3328	transposase activity
ATY42_00885	COG0606	chelatase, subunit chli
ATY42_00920	COG1166	arginine decarboxylase activity
ATY42_00930	COG3501	Rhs element vgr protein
ATY42_00995	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_01020	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
ATY42_01035	COG0210	DNA helicase
ATY42_01050	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
ATY42_01085	COG2937	Belongs to the GPAT DAPAT family
ATY42_01105	COG2963	transposase activity
ATY42_01120	COG2755	lipolytic protein G-D-S-L family
ATY42_01130	COG3186	Phenylalanine-4-hydroxylase
ATY42_01135	COG1522	sequence-specific DNA binding
ATY42_01150	COG4773	Receptor
ATY42_01190	COG1064	alcohol dehydrogenase
ATY42_01195	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY42_01200	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY42_01205	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY42_01210	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_01230	COG3039	Transposase
ATY42_01235	COG0676	glucose-6-phosphate 1-epimerase activity
ATY42_01255	COG3135	benzoate transporter
ATY42_01260	COG3135	benzoate transporter
ATY42_01295	COG2963	transposase activity
ATY42_01315	COG3293	Transposase
ATY42_01335	COG2853	Lipoprotein
ATY42_01350	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY42_01355	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY42_01360	COG1127	ABC transporter
ATY42_01390	COG3293	Transposase
ATY42_01420	COG2801	Transposase and inactivated derivatives
ATY42_01425	COG2963	transposase activity
ATY42_01445	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY42_01450	COG3293	Transposase
ATY42_01460	COG3265	gluconokinase activity
ATY42_01465	COG2211	Major facilitator Superfamily
ATY42_01470	COG3459	Glycosyltransferase 36 associated
ATY42_01485	COG2205	protein histidine kinase activity
ATY42_01495	COG1414	Transcriptional regulator
ATY42_01500	COG0738	Major facilitator superfamily
ATY42_01505	COG3254	rhamnose metabolic process
ATY42_01530	COG0339	signal peptide processing
ATY42_01555	COG0564	pseudouridine synthase activity
ATY42_01610	COG3293	Transposase
ATY42_01615	COG2963	transposase activity
ATY42_01660	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ATY42_01670	COG0842	Transport permease protein
ATY42_01675	COG1131	(ABC) transporter
ATY42_01680	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY42_01700	COG1476	TRANSCRIPTIONal
ATY42_01710	COG4555	ABC transporter
ATY42_01745	COG0625	glutathione transferase activity
ATY42_01780	COG0583	DNA-binding transcription factor activity
ATY42_01810	COG1199	ATP-dependent helicase activity
ATY42_01830	COG1566	PFAM secretion protein HlyD family protein
ATY42_01855	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY42_01865	COG0745	RESPONSE REGULATOR receiver
ATY42_01870	COG2205	protein histidine kinase activity
ATY42_01895	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATY42_01895	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATY42_01950	COG3237	CsbD-like
ATY42_01955	COG0180	Tryptophanyl-tRNA synthetase
ATY42_01960	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY42_02005	COG0753	catalase activity
ATY42_02010	COG1595	DNA-templated transcription, initiation
ATY42_02020	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ATY42_02030	COG0628	permease
ATY42_02045	COG1040	competence protein
ATY42_02065	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_02080	COG0463	Glycosyl transferase, family 2
ATY42_02090	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATY42_02095	COG3100	YcgL domain-containing protein
ATY42_02110	COG3387	PFAM Glycoside hydrolase 15-related
ATY42_02115	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY42_02130	COG2239	Acts as a magnesium transporter
ATY42_02140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ATY42_02140	COG1042	CoA-binding domain protein
ATY42_02140	COG0045	succinate-CoA ligase (ADP-forming) activity
ATY42_02150	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY42_02155	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATY42_02175	COG2963	transposase activity
ATY42_02195	COG3485	protocatechuate 3,4-dioxygenase
ATY42_02200	COG3485	protocatechuate 3,4-dioxygenase
ATY42_02205	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATY42_02210	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY42_02215	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ATY42_02225	COG1414	Transcriptional regulator
ATY42_02235	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_02240	COG4221	oxidoreductase activity
ATY42_02255	COG0018	arginyl-trna synthetase
ATY42_02260	COG2003	Belongs to the UPF0758 family
ATY42_02265	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATY42_02290	COG0463	Glycosyl transferase, family 2
ATY42_02305	COG1475	DNA binding
ATY42_02310	COG1192	Involved in chromosome partitioning
ATY42_02325	COG0708	Exodeoxyribonuclease III
ATY42_02330	COG2211	Major facilitator Superfamily
ATY42_02345	COG0739	heme binding
ATY42_02385	COG2963	transposase activity
ATY42_02420	COG3293	Transposase
ATY42_02445	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ATY42_02465	COG2814	Major facilitator Superfamily
ATY42_02480	COG1289	transmembrane transporter activity
ATY42_02490	COG0577	efflux transmembrane transporter activity
ATY42_02490	COG1136	(ABC) transporter
ATY42_02495	COG0151	Belongs to the GarS family
ATY42_02515	COG2267	carboxylic ester hydrolase activity
ATY42_02525	COG2267	carboxylic ester hydrolase activity
ATY42_02530	COG2453	phosphatase
ATY42_02530	COG0671	phosphoesterase, PA-phosphatase related
ATY42_02540	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ATY42_02575	COG0439	Biotin carboxylase
ATY42_02585	COG0511	ligase activity, forming carbon-carbon bonds
ATY42_02605	COG1324	tolerance protein
ATY42_02625	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATY42_02650	COG0534	Mate efflux family protein
ATY42_02655	COG0616	signal peptide processing
ATY42_02665	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_02685	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATY42_02685	COG1754	DNA topoisomerase type I activity
ATY42_02705	COG0758	DNA mediated transformation
ATY42_02710	COG1652	LysM domain
ATY42_02715	COG0242	peptide deformylase activity
ATY42_02725	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATY42_02725	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATY42_02770	COG1560	Kdo2-lipid A biosynthetic process
ATY42_02780	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY42_02990	COG1294	oxidase, subunit
ATY42_02995	COG1271	oxidase subunit
ATY42_03000	COG2204	response regulator
ATY42_03035	COG2972	Histidine kinase
ATY42_03040	COG3279	Response regulator of the LytR AlgR family
ATY42_03045	COG3279	Response regulator of the LytR AlgR family
ATY42_03055	COG0531	amino acid
ATY42_03070	COG3590	peptidase
ATY42_03085	COG0667	Aldo Keto reductase
ATY42_03100	COG3384	dioxygenase
ATY42_03110	COG1573	uracil-dna glycosylase
ATY42_03115	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
ATY42_03130	COG0025	NhaP-type Na H and K H
ATY42_03135	COG1131	(ABC) transporter
ATY42_03140	COG0842	Transport permease protein
ATY42_03160	COG1404	Belongs to the peptidase S8 family
ATY42_03175	COG0745	RESPONSE REGULATOR receiver
ATY42_03215	COG1522	sequence-specific DNA binding
ATY42_03220	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY42_03245	COG2205	protein histidine kinase activity
ATY42_03245	COG2202	Pas domain
ATY42_03270	COG2813	Specifically methylates the guanine in position
ATY42_03275	COG1187	pseudouridine synthase activity
ATY42_03280	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ATY42_03315	COG0697	spore germination
ATY42_03325	COG2011	ABC-type metal ion transport system permease component
ATY42_03355	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATY42_03365	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATY42_03385	COG0356	it plays a direct role in the translocation of protons across the membrane
ATY42_03420	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ATY42_03470	COG3842	ATPase activity
ATY42_03475	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY42_03480	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY42_03495	COG3293	Transposase
ATY42_03535	COG0339	signal peptide processing
ATY42_03570	COG1956	GAF domain-containing protein
ATY42_03585	COG0720	synthase
ATY42_03595	COG0513	Belongs to the DEAD box helicase family
ATY42_03635	COG0626	cystathionine gamma-synthase activity
ATY42_03670	COG3328	transposase activity
ATY42_03695	COG2086	electron transfer activity
ATY42_03720	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
ATY42_03720	COG0662	Cupin 2, conserved barrel domain protein
ATY42_03725	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATY42_03760	COG3218	ABC-type transport auxiliary lipoprotein component
ATY42_03760	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ATY42_03765	COG1127	ABC transporter
ATY42_03770	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ATY42_03795	COG1183	phosphatidylcholine synthase activity
ATY42_03820	COG3039	Transposase
ATY42_03860	COG2801	Transposase and inactivated derivatives
ATY42_03865	COG2963	transposase activity
ATY42_03875	COG0525	valine-tRNA ligase activity
ATY42_03900	COG0795	lipopolysaccharide-transporting ATPase activity
ATY42_03910	COG4974	Belongs to the 'phage' integrase family
ATY42_03915	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ATY42_03920	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATY42_03920	COG0047	phosphoribosylformylglycinamidine synthase activity
ATY42_03925	COG5295	Hep Hag repeat protein
ATY42_03945	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY42_03955	COG1459	type II secretion system
ATY42_03960	COG2165	general secretion pathway protein
ATY42_03965	COG4970	Tfp pilus assembly protein FimT
ATY42_03970	COG2165	general secretion pathway protein
ATY42_03975	COG4795	General secretion pathway protein
ATY42_03980	COG3156	type II secretion system protein K
ATY42_03985	COG3166	PFAM Fimbrial assembly family protein
ATY42_04000	COG1450	Type ii and iii secretion system protein
ATY42_04010	COG2188	Transcriptional regulator
ATY42_04045	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
ATY42_04050	COG1518	maintenance of DNA repeat elements
ATY42_04090	COG1399	metal-binding, possibly nucleic acid-binding protein
ATY42_04115	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_04130	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATY42_04135	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATY42_04160	COG3829	transcription factor binding
ATY42_04185	COG3039	Transposase
ATY42_04225	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_04235	COG0678	peroxiredoxin activity
ATY42_04255	COG0330	HflC and HflK could
ATY42_04260	COG0330	HflC and HflK could
ATY42_04275	COG0308	aminopeptidase N
ATY42_04300	COG3039	Transposase
ATY42_04320	COG1560	Kdo2-lipid A biosynthetic process
ATY42_04325	COG1519	Transferase
ATY42_04330	COG1538	Outer membrane efflux protein
ATY42_04335	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ATY42_04415	COG3710	Transcriptional regulator
ATY42_04435	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ATY42_04480	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ATY42_04490	COG3781	membrane
ATY42_04505	COG0625	glutathione transferase activity
ATY42_04515	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ATY42_04540	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
ATY42_04560	COG2963	transposase activity
ATY42_04565	COG2801	Transposase and inactivated derivatives
ATY42_04610	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_04640	COG2963	transposase activity
ATY42_04670	COG3293	Transposase
ATY42_04690	COG3039	Transposase
ATY42_04710	COG3293	Transposase
ATY42_04715	COG0584	glycerophosphoryl diester phosphodiesterase
ATY42_04745	COG0473	3-isopropylmalate dehydrogenase activity
ATY42_04775	COG2963	transposase activity
ATY42_04800	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATY42_04805	COG0740	serine-type endopeptidase activity
ATY42_04840	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATY42_04865	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY42_04870	COG0631	protein serine/threonine phosphatase activity
ATY42_04895	COG3501	Rhs element vgr protein
ATY42_04935	COG0582	viral genome integration into host DNA
ATY42_04945	COG0859	PFAM glycosyl transferase family 9
ATY42_04955	COG1234	tRNA 3'-trailer cleavage
ATY42_04960	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ATY42_04975	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ATY42_04980	COG0314	molybdopterin synthase activity
ATY42_05005	COG0537	adenosine 5'-monophosphoramidase activity
ATY42_05025	COG0714	Associated with various cellular activities
ATY42_05045	COG0242	peptide deformylase activity
ATY42_05080	COG3039	Transposase
ATY42_05100	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY42_05105	COG0726	polysaccharide deacetylase
ATY42_05150	COG2211	Major facilitator Superfamily
ATY42_05155	COG1609	Transcriptional regulator
ATY42_05160	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_05165	COG2851	Citrate transporter
ATY42_05180	COG0642	Histidine kinase
ATY42_05185	COG1840	ABC-type Fe3 transport system, periplasmic component
ATY42_05190	COG2197	response regulator
ATY42_05215	COG0583	DNA-binding transcription factor activity
ATY42_05230	COG4191	Histidine kinase
ATY42_05245	COG0280	phosphate acetyltransferase
ATY42_05245	COG0281	malic enzyme
ATY42_05255	COG2963	transposase activity
ATY42_05260	COG2801	Transposase and inactivated derivatives
ATY42_05285	COG0352	thiamine-phosphate diphosphorylase activity
ATY42_05290	COG1773	rubredoxin
ATY42_05295	COG2912	Transglutaminase-like superfamily
ATY42_05315	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATY42_05335	COG0006	proline dipeptidase activity
ATY42_05350	COG3293	Transposase
ATY42_05370	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATY42_05390	COG1561	YicC-like family, N-terminal region
ATY42_05410	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY42_05420	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATY42_05430	COG0254	rRNA binding
ATY42_05450	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
ATY42_05495	COG0714	Associated with various cellular activities
ATY42_05515	COG2304	oxidoreductase activity
ATY42_05530	COG1301	dicarboxylic acid transport
ATY42_05535	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ATY42_05540	COG4773	Receptor
ATY42_05545	COG0739	heme binding
ATY42_05550	COG1376	ErfK ybiS ycfS ynhG family protein
ATY42_05575	COG1022	Amp-dependent synthetase and ligase
ATY42_05585	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_05595	COG0745	RESPONSE REGULATOR receiver
ATY42_05600	COG0642	Histidine kinase
ATY42_05620	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ATY42_05625	COG4149	molybdate abc transporter
ATY42_05630	COG0725	ABC transporter, periplasmic molybdate-binding protein
ATY42_05635	COG3453	Protein conserved in bacteria
ATY42_05635	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ATY42_05670	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ATY42_05675	COG3293	Transposase
ATY42_05690	COG2205	protein histidine kinase activity
ATY42_05695	COG0745	RESPONSE REGULATOR receiver
ATY42_05745	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ATY42_05750	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ATY42_05785	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ATY42_05805	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ATY42_05860	COG2201	protein-glutamate methylesterase activity
ATY42_05895	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ATY42_05905	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ATY42_05925	COG1842	Phage shock protein A
ATY42_05950	COG0754	glutathionylspermidine amidase activity
ATY42_05975	COG0789	Transcriptional regulator
ATY42_06030	COG0531	amino acid
ATY42_06035	COG2197	response regulator
ATY42_06045	COG1113	amino acid transport
ATY42_06055	COG1271	oxidase subunit
ATY42_06060	COG1294	oxidase, subunit
ATY42_06070	COG2239	Acts as a magnesium transporter
ATY42_06075	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY42_06080	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY42_06100	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY42_06115	COG1137	ATPase activity
ATY42_06120	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ATY42_06130	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ATY42_06140	COG0271	Belongs to the BolA IbaG family
ATY42_06165	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATY42_06190	COG0628	permease
ATY42_06200	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ATY42_06205	COG3178	'Phosphotransferase
ATY42_06225	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY42_06230	COG1555	photosystem II stabilization
ATY42_06285	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY42_06295	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATY42_06335	COG0534	Mate efflux family protein
ATY42_06365	COG0542	response to heat
ATY42_06380	COG2963	transposase activity
ATY42_06395	COG4206	TonB-dependent receptor
ATY42_06445	COG0019	diaminopimelate decarboxylase activity
ATY42_06455	COG2814	Major facilitator Superfamily
ATY42_06460	COG4264	IucA IucC family
ATY42_06470	COG4772	TonB-dependent receptor
ATY42_06480	COG2801	Transposase and inactivated derivatives
ATY42_06485	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY42_06485	COG4651	solute:proton antiporter activity
ATY42_06515	COG0488	(ABC) transporter
ATY42_06540	COG2755	lipolytic protein G-D-S-L family
ATY42_06540	COG0657	acetylesterase activity
ATY42_06565	COG2207	Transcriptional regulator
ATY42_06570	COG0326	Molecular chaperone. Has ATPase activity
ATY42_06590	COG2963	transposase activity
ATY42_06600	COG3328	transposase activity
ATY42_06630	COG2801	Transposase and inactivated derivatives
ATY42_06635	COG2963	transposase activity
ATY42_06640	COG3039	Transposase
ATY42_06655	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATY42_06660	COG0719	Fe-S assembly protein
ATY42_06665	COG0396	ATPase activity
ATY42_06670	COG0719	Fe-S assembly protein
ATY42_06675	COG1959	2 iron, 2 sulfur cluster binding
ATY42_06730	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATY42_06735	COG3039	Transposase
ATY42_06760	COG0519	Catalyzes the synthesis of GMP from XMP
ATY42_06790	COG1764	response to oxidative stress
ATY42_06800	COG0384	phenazine biosynthesis protein PhzF
ATY42_06805	COG0384	phenazine biosynthesis protein PhzF
ATY42_06815	COG0527	aspartate kinase activity
ATY42_06845	COG0142	geranyltranstransferase activity
ATY42_06850	COG0629	single-stranded DNA binding
ATY42_06860	COG5001	Diguanylate cyclase
ATY42_06860	COG2203	Gaf domain
ATY42_06860	COG3706	GGDEF domain
ATY42_06860	COG4251	negative regulation of phosphorylation
ATY42_06865	COG0604	alcohol dehydrogenase
ATY42_06865	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_06865	COG3321	synthase
ATY42_06890	COG2879	small protein
ATY42_06895	COG1966	Carbon starvation protein
ATY42_06900	COG1741	Belongs to the pirin family
ATY42_06910	COG3501	Rhs element vgr protein
ATY42_06935	COG3501	Rhs element vgr protein
ATY42_06975	COG1741	Belongs to the pirin family
ATY42_06985	COG1515	deoxyribonuclease V activity
ATY42_07000	COG3590	peptidase
ATY42_07015	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ATY42_07020	COG2199	diguanylate cyclase activity
ATY42_07020	COG2200	EAL domain
ATY42_07020	COG2202	Pas domain
ATY42_07025	COG0835	chemotaxis
ATY42_07030	COG0840	transmembrane signaling receptor activity
ATY42_07035	COG2198	Histidine kinase
ATY42_07035	COG0643	Histidine kinase
ATY42_07045	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATY42_07055	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ATY42_07065	COG2205	protein histidine kinase activity
ATY42_07090	COG3039	Transposase
ATY42_07110	COG3039	Transposase
ATY42_07115	COG3039	Transposase
ATY42_07150	COG0735	belongs to the Fur family
ATY42_07190	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ATY42_07195	COG0084	hydrolase, TatD family'
ATY42_07210	COG1960	acyl-CoA dehydrogenase activity
ATY42_07240	COG0367	asparagine synthase
ATY42_07250	COG0305	Participates in initiation and elongation during chromosome replication
ATY42_07255	COG0415	Belongs to the DNA photolyase family
ATY42_07380	COG5002	protein histidine kinase activity
ATY42_07380	COG5001	Diguanylate cyclase
ATY42_07385	COG1187	pseudouridine synthase activity
ATY42_07410	COG0475	glutathione-regulated potassium exporter activity
ATY42_07415	COG5000	phosphorelay sensor kinase activity
ATY42_07415	COG5002	protein histidine kinase activity
ATY42_07420	COG0745	RESPONSE REGULATOR receiver
ATY42_07450	COG1132	(ABC) transporter
ATY42_07460	COG3293	Transposase
ATY42_07470	COG3039	Transposase
ATY42_07480	COG3039	Transposase
ATY42_07490	COG3039	Transposase
ATY42_07515	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ATY42_07525	COG4969	Belongs to the N-Me-Phe pilin family
ATY42_07530	COG2194	sulfuric ester hydrolase activity
ATY42_07550	COG3039	Transposase
ATY42_07560	COG2184	nucleotidyltransferase activity
ATY42_07580	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ATY42_07590	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ATY42_07590	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY42_07595	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY42_07600	COG0564	pseudouridine synthase activity
ATY42_07625	COG3387	PFAM Glycoside hydrolase 15-related
ATY42_07630	COG1877	trehalose-phosphatase activity
ATY42_07685	COG1595	DNA-templated transcription, initiation
ATY42_07695	COG1946	Acyl-CoA thioesterase
ATY42_07710	COG0824	Thioesterase
ATY42_07715	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATY42_07735	COG0268	Binds directly to 16S ribosomal RNA
ATY42_07740	COG0728	peptidoglycan biosynthetic process
ATY42_07745	COG0196	riboflavin kinase activity
ATY42_07775	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ATY42_07780	COG1845	cytochrome c oxidase, subunit III
ATY42_07785	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ATY42_07795	COG3501	Rhs element vgr protein
ATY42_07815	COG3209	COG3209 Rhs family protein
ATY42_07830	COG2963	transposase activity
ATY42_07860	COG2801	Transposase and inactivated derivatives
ATY42_07865	COG2963	transposase activity
ATY42_07885	COG2963	transposase activity
ATY42_07965	COG0824	Thioesterase
ATY42_07975	COG0848	biopolymer transport protein
ATY42_07990	COG2885	chlorophyll binding
ATY42_08000	COG0602	queuosine metabolic process
ATY42_08005	COG1187	pseudouridine synthase activity
ATY42_08050	COG3293	Transposase
ATY42_08080	COG0514	ATP-dependent DNA helicase (RecQ)
ATY42_08085	COG0783	Belongs to the Dps family
ATY42_08090	COG1643	Atp-dependent helicase
ATY42_08100	COG0837	glucose binding
ATY42_08105	COG0837	glucose binding
ATY42_08110	COG0837	glucose binding
ATY42_08120	COG3293	Transposase
ATY42_08155	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ATY42_08170	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATY42_08180	COG1199	ATP-dependent helicase activity
ATY42_08190	COG1397	ADP-ribosylglycohydrolase
ATY42_08200	COG0189	ligase activity
ATY42_08215	COG0835	chemotaxis
ATY42_08220	COG0840	transmembrane signaling receptor activity
ATY42_08255	COG2304	oxidoreductase activity
ATY42_08270	COG1446	asparaginase
ATY42_08275	COG3142	Participates in the control of copper homeostasis
ATY42_08325	COG3537	Alpha-1,2-mannosidase
ATY42_08385	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY42_08395	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATY42_08400	COG1388	LysM domain
ATY42_08400	COG3858	chitin binding
ATY42_08415	COG0837	glucose binding
ATY42_08420	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATY42_08440	COG3956	TIGRFAM MazG family protein
ATY42_08450	COG0330	HflC and HflK could
ATY42_08490	COG1960	acyl-CoA dehydrogenase activity
ATY42_08500	COG1309	transcriptional regulator
ATY42_08505	COG4771	TonB-dependent receptor
ATY42_08515	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATY42_08525	COG0463	Glycosyl transferase, family 2
ATY42_08530	COG0516	GMP reductase activity
ATY42_08530	COG0517	IMP dehydrogenase activity
ATY42_08540	COG1272	protein, Hemolysin III
ATY42_08550	COG0739	heme binding
ATY42_08555	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY42_08560	COG0626	cystathionine gamma-synthase activity
ATY42_08570	COG1760	l-serine dehydratase
ATY42_08580	COG2353	YceI-like domain
ATY42_08590	COG2353	YceI-like domain
ATY42_08640	COG3867	Arabinogalactan endo-beta-1,4-galactanase
ATY42_08665	COG1960	acyl-CoA dehydrogenase activity
ATY42_08670	COG1024	Enoyl-CoA hydratase
ATY42_08690	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY42_08690	COG1024	Enoyl-CoA hydratase
ATY42_08705	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATY42_08765	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ATY42_08770	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
ATY42_08775	COG3046	protein related to deoxyribodipyrimidine photolyase
ATY42_08790	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATY42_08795	COG1278	Cold shock
ATY42_08820	COG1201	RNA secondary structure unwinding
ATY42_08825	COG1793	dna ligase
ATY42_08835	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ATY42_08835	COG1793	dna ligase
ATY42_08850	COG3706	GGDEF domain
ATY42_08850	COG0745	RESPONSE REGULATOR receiver
ATY42_08865	COG0183	Belongs to the thiolase family
ATY42_08880	COG1451	nucleotide metabolic process
ATY42_08890	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY42_08925	COG1047	Peptidyl-prolyl cis-trans
ATY42_08940	COG2824	Alkylphosphonate utilization operon protein PhnA
ATY42_08950	COG1902	pentaerythritol trinitrate reductase activity
ATY42_08955	COG2814	Major facilitator Superfamily
ATY42_09005	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
ATY42_09005	COG0392	lysyltransferase activity
ATY42_09015	COG0251	oxidation-reduction process
ATY42_09020	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY42_09035	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ATY42_09060	COG1595	DNA-templated transcription, initiation
ATY42_09080	COG2878	Part of a membrane complex involved in electron transport
ATY42_09110	COG0833	amino acid
ATY42_09115	COG2040	homocysteine
ATY42_09125	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY42_09215	COG1131	(ABC) transporter
ATY42_09220	COG4771	TonB-dependent receptor
ATY42_09270	COG0750	zinc metalloprotease
ATY42_09280	COG0575	Belongs to the CDS family
ATY42_09345	COG0024	Methionine aminopeptidase
ATY42_09365	COG1393	Belongs to the ArsC family
ATY42_09380	COG0367	asparagine synthase
ATY42_09395	COG4774	siderophore transport
ATY42_09430	COG1566	PFAM secretion protein HlyD family protein
ATY42_09435	COG2814	Major facilitator Superfamily
ATY42_09470	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_09500	COG1960	acyl-CoA dehydrogenase activity
ATY42_09530	COG2914	Belongs to the UPF0125 (RnfH) family
ATY42_09535	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY42_09545	COG0497	DNA recombination
ATY42_09570	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
ATY42_09575	COG1605	Chorismate mutase
ATY42_09575	COG0287	Prephenate dehydrogenase
ATY42_09590	COG0583	DNA-binding transcription factor activity
ATY42_09595	COG1132	(ABC) transporter
ATY42_09630	COG2850	peptidyl-arginine hydroxylation
ATY42_09665	COG3293	Transposase
ATY42_09675	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_09715	COG1131	(ABC) transporter
ATY42_09720	COG1725	Transcriptional regulator
ATY42_09725	COG0386	Belongs to the glutathione peroxidase family
ATY42_09765	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY42_09775	COG1410	methionine synthase
ATY42_09775	COG0646	methionine synthase
ATY42_09780	COG0646	methionine synthase
ATY42_09780	COG1410	methionine synthase
ATY42_09790	COG1960	acyl-CoA dehydrogenase activity
ATY42_09810	COG0557	exoribonuclease II activity
ATY42_09830	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY42_09840	COG3039	Transposase
ATY42_09855	COG3328	transposase activity
ATY42_09865	COG1278	Cold shock
ATY42_09880	COG3039	Transposase
ATY42_09890	COG3039	Transposase
ATY42_09935	COG3039	Transposase
ATY42_09950	COG2801	Transposase and inactivated derivatives
ATY42_09955	COG2963	transposase activity
ATY42_09985	COG3039	Transposase
ATY42_09995	COG0583	DNA-binding transcription factor activity
ATY42_10045	COG2201	protein-glutamate methylesterase activity
ATY42_10080	COG0531	amino acid
ATY42_10085	COG0531	amino acid
ATY42_10095	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ATY42_10100	COG0277	FAD linked oxidase domain protein
ATY42_10165	COG0436	Aminotransferase
ATY42_10190	COG1187	pseudouridine synthase activity
ATY42_10195	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATY42_10200	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATY42_10205	COG2350	Protein conserved in bacteria
ATY42_10235	COG1175	transmembrane transport
ATY42_10240	COG0395	ABC-type sugar transport system, permease component
ATY42_10265	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ATY42_10270	COG2957	Belongs to the agmatine deiminase family
ATY42_10280	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ATY42_10290	COG0539	negative regulation of cytoplasmic translation
ATY42_10305	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ATY42_10310	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATY42_10320	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATY42_10325	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATY42_10325	COG0475	glutathione-regulated potassium exporter activity
ATY42_10380	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY42_10385	COG0583	DNA-binding transcription factor activity
ATY42_10405	COG0583	DNA-binding transcription factor activity
ATY42_10410	COG0583	DNA-binding transcription factor activity
ATY42_10425	COG1914	H( )-stimulated, divalent metal cation uptake system
ATY42_10430	COG1321	iron dependent repressor
ATY42_10435	COG0590	tRNA wobble adenosine to inosine editing
ATY42_10445	COG0668	transmembrane transport
ATY42_10485	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_10490	COG1183	phosphatidylcholine synthase activity
ATY42_10500	COG3243	poly(R)-hydroxyalkanoic acid synthase
ATY42_10515	COG0723	plastoquinol--plastocyanin reductase activity
ATY42_10515	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY42_10525	COG2183	response to ionizing radiation
ATY42_10535	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ATY42_10550	COG0671	phosphoesterase, PA-phosphatase related
ATY42_10570	COG1794	racemase activity, acting on amino acids and derivatives
ATY42_10575	COG0697	spore germination
ATY42_10580	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ATY42_10600	COG1012	belongs to the aldehyde dehydrogenase family
ATY42_10635	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ATY42_10650	COG0124	histidyl-tRNA synthetase
ATY42_10700	COG0140	phosphoribosyl-ATP diphosphatase activity
ATY42_10700	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ATY42_10850	COG3293	Transposase
ATY42_10860	COG3039	Transposase
ATY42_10875	COG3293	Transposase
ATY42_10905	COG3293	Transposase
ATY42_10925	COG2201	protein-glutamate methylesterase activity
ATY42_10955	COG3039	Transposase
ATY42_10970	COG3328	transposase activity
ATY42_11015	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATY42_11040	COG0811	peptide transport
ATY42_11065	COG4591	ABC-type transport system involved in lipoprotein release permease component
ATY42_11080	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ATY42_11095	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ATY42_11105	COG0354	folic acid binding
ATY42_11115	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATY42_11125	COG0363	glucosamine-6-phosphate deaminase activity
ATY42_11130	COG0129	dihydroxy-acid dehydratase activity
ATY42_11135	COG0800	Aldolase
ATY42_11170	COG5002	protein histidine kinase activity
ATY42_11170	COG2205	protein histidine kinase activity
ATY42_11170	COG0784	Response regulator, receiver
ATY42_11180	COG3293	Transposase
ATY42_11200	COG3706	GGDEF domain
ATY42_11255	COG0386	Belongs to the glutathione peroxidase family
ATY42_11340	COG4251	negative regulation of phosphorylation
ATY42_11340	COG5001	Diguanylate cyclase
ATY42_11340	COG3706	GGDEF domain
ATY42_11340	COG2203	Gaf domain
ATY42_11350	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY42_11380	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ATY42_11395	COG0617	tRNA 3'-terminal CCA addition
ATY42_11410	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY42_11460	COG4566	intracellular signal transduction
ATY42_11470	COG2963	transposase activity
ATY42_11485	COG0077	Prephenate dehydratase
ATY42_11485	COG1605	Chorismate mutase
ATY42_11495	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ATY42_11545	COG2986	histidine ammonia-lyase
ATY42_11555	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ATY42_11575	COG2963	transposase activity
ATY42_11595	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ATY42_11610	COG3115	cell septum assembly
ATY42_11635	COG0316	Belongs to the HesB IscA family
ATY42_11670	COG0288	reversible hydration of carbon dioxide
ATY42_11695	COG2925	Exonuclease
ATY42_11705	COG0667	Aldo Keto reductase
ATY42_11730	COG0488	(ABC) transporter
ATY42_11735	COG4133	protoheme IX ABC transporter activity
ATY42_11740	COG0488	(ABC) transporter
ATY42_11775	COG0494	nUDIX hydrolase
ATY42_11785	COG1024	Enoyl-CoA hydratase
ATY42_11795	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATY42_11810	COG3039	Transposase
ATY42_11825	COG3293	Transposase
ATY42_11845	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATY42_11850	COG0573	inorganic phosphate transmembrane transporter activity
ATY42_11865	COG0704	Plays a role in the regulation of phosphate uptake
ATY42_11875	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATY42_11890	COG3328	transposase activity
ATY42_11920	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ATY42_11930	COG1862	Preprotein translocase
ATY42_12005	COG3293	Transposase
ATY42_12020	COG0405	Gamma-glutamyltransferase
ATY42_12025	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ATY42_12045	COG0742	ribosomal rna small subunit methyltransferase
ATY42_12070	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ATY42_12105	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_12110	COG3039	Transposase
ATY42_12140	COG0303	'Molybdopterin
ATY42_12150	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ATY42_12160	COG1426	Protein conserved in bacteria
ATY42_12175	COG0105	UTP biosynthetic process
ATY42_12185	COG1250	3-hydroxyacyl-CoA dehydrogenase
ATY42_12185	COG1024	Enoyl-CoA hydratase
ATY42_12190	COG0183	Belongs to the thiolase family
ATY42_12195	COG0038	chloride channel
ATY42_12215	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATY42_12235	COG1674	ftsk spoiiie
ATY42_12240	COG0492	ferredoxin-NADP+ reductase activity
ATY42_12265	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATY42_12270	COG0542	response to heat
ATY42_12275	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ATY42_12285	COG0482	sulfurtransferase activity
ATY42_12310	COG5001	Diguanylate cyclase
ATY42_12315	COG4585	Histidine kinase
ATY42_12325	COG5002	protein histidine kinase activity
ATY42_12345	COG0784	Response regulator, receiver
ATY42_12345	COG0835	chemotaxis
ATY42_12355	COG1558	bacterial-type flagellum-dependent cell motility
ATY42_12360	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ATY42_12365	COG1749	Flagellar hook protein flgE
ATY42_12370	COG4787	bacterial-type flagellum-dependent cell motility
ATY42_12375	COG4786	Flagellar basal body rod
ATY42_12405	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ATY42_12410	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ATY42_12440	COG2201	protein-glutamate methylesterase activity
ATY42_12445	COG2204	response regulator
ATY42_12460	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY42_12470	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_12500	COG1677	Flagellar hook-basal body complex protein FliE
ATY42_12550	COG3190	flagellar
ATY42_12560	COG1987	bacterial-type flagellum assembly
ATY42_12565	COG1684	flagellar biosynthetic protein fliR
ATY42_12570	COG3300	MHYT domain
ATY42_12570	COG5001	Diguanylate cyclase
ATY42_12575	COG5001	Diguanylate cyclase
ATY42_12575	COG3300	MHYT domain
ATY42_12590	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ATY42_12600	COG0455	bacterial-type flagellum organization
ATY42_12620	COG0643	Histidine kinase
ATY42_12620	COG2198	Histidine kinase
ATY42_12635	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_12650	COG3039	Transposase
ATY42_12745	COG3039	Transposase
ATY42_12750	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
ATY42_12755	COG4988	ABC transporter
ATY42_12765	COG1271	oxidase subunit
ATY42_12770	COG1294	oxidase, subunit
ATY42_12830	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ATY42_12835	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATY42_12845	COG0137	argininosuccinate synthase activity
ATY42_12850	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATY42_12865	COG2166	iron-sulfur cluster assembly
ATY42_12880	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ATY42_12895	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATY42_12905	COG4302	ethanolamine ammonia-lyase activity
ATY42_12910	COG3293	Transposase
ATY42_12935	COG3039	Transposase
ATY42_12945	COG4677	pectinesterase activity
ATY42_12985	COG0402	S-adenosylhomocysteine deaminase activity
ATY42_13000	COG1509	lysine 2,3-aminomutase activity
ATY42_13005	COG5001	Diguanylate cyclase
ATY42_13005	COG3300	MHYT domain
ATY42_13020	COG0483	inositol monophosphate 1-phosphatase activity
ATY42_13050	COG0513	Belongs to the DEAD box helicase family
ATY42_13070	COG0625	glutathione transferase activity
ATY42_13085	COG4681	YaeQ
ATY42_13090	COG2081	HI0933 family
ATY42_13110	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_13135	COG0860	N-Acetylmuramoyl-L-alanine amidase
ATY42_13140	COG0802	atpase or kinase
ATY42_13145	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ATY42_13145	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATY42_13150	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY42_13160	COG3293	Transposase
ATY42_13180	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY42_13230	COG3328	transposase activity
ATY42_13260	COG2969	positive regulation of protein catabolic process
ATY42_13265	COG0625	glutathione transferase activity
ATY42_13270	COG2857	Cytochrome c1
ATY42_13275	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ATY42_13280	COG0723	plastoquinol--plastocyanin reductase activity
ATY42_13285	COG0741	lytic transglycosylase activity
ATY42_13310	COG1702	phosphate starvation-inducible protein PhoH
ATY42_13330	COG4535	Mg2 and Co2 transporter CorC
ATY42_13345	COG1012	belongs to the aldehyde dehydrogenase family
ATY42_13355	COG1177	transmembrane transport
ATY42_13400	COG0174	glutamine synthetase
ATY42_13405	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY42_13410	COG3706	GGDEF domain
ATY42_13410	COG0745	RESPONSE REGULATOR receiver
ATY42_13415	COG0477	Major facilitator Superfamily
ATY42_13425	COG0243	molybdopterin cofactor binding
ATY42_13450	COG1121	(ABC) transporter
ATY42_13460	COG2733	membrane
ATY42_13465	COG0784	Response regulator, receiver
ATY42_13465	COG5002	protein histidine kinase activity
ATY42_13465	COG2205	protein histidine kinase activity
ATY42_13475	COG3039	Transposase
ATY42_13480	COG2902	Dehydrogenase
ATY42_13490	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY42_13495	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY42_13515	COG1609	Transcriptional regulator
ATY42_13520	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ATY42_13520	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATY42_13525	COG1105	Belongs to the carbohydrate kinase PfkB family
ATY42_13530	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY42_13530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATY42_13545	COG3039	Transposase
ATY42_13610	COG3501	Rhs element vgr protein
ATY42_13630	COG3501	Rhs element vgr protein
ATY42_13670	COG3039	Transposase
ATY42_13700	COG4771	TonB-dependent receptor
ATY42_13710	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY42_13730	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ATY42_13735	COG1360	Flagellar Motor Protein
ATY42_13740	COG1192	Involved in chromosome partitioning
ATY42_13745	COG0835	chemotaxis
ATY42_13755	COG0745	RESPONSE REGULATOR receiver
ATY42_13785	COG0840	transmembrane signaling receptor activity
ATY42_13795	COG0840	transmembrane signaling receptor activity
ATY42_13800	COG0840	transmembrane signaling receptor activity
ATY42_13805	COG0840	transmembrane signaling receptor activity
ATY42_13810	COG0840	transmembrane signaling receptor activity
ATY42_13815	COG0840	transmembrane signaling receptor activity
ATY42_13825	COG0835	chemotaxis
ATY42_13845	COG0840	transmembrane signaling receptor activity
ATY42_13870	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ATY42_13900	COG0318	PFAM AMP-dependent synthetase and ligase
ATY42_13905	COG1024	Enoyl-CoA hydratase
ATY42_13910	COG2205	protein histidine kinase activity
ATY42_13910	COG2198	Histidine kinase
ATY42_13910	COG0784	Response regulator, receiver
ATY42_13930	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATY42_13960	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATY42_13970	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY42_13975	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATY42_13985	COG0505	Belongs to the CarA family
ATY42_13990	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATY42_14000	COG3293	Transposase
ATY42_14005	COG2258	MOSC domain
ATY42_14010	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATY42_14075	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_14085	COG0477	Major facilitator Superfamily
ATY42_14095	COG1070	Carbohydrate kinase
ATY42_14110	COG1501	Belongs to the glycosyl hydrolase 31 family
ATY42_14125	COG0800	Aldolase
ATY42_14140	COG3734	2-keto-3-deoxy-galactonokinase
ATY42_14145	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ATY42_14155	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY42_14170	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ATY42_14175	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ATY42_14185	COG0351	phosphomethylpyrimidine kinase
ATY42_14215	COG0583	DNA-binding transcription factor activity
ATY42_14220	COG1741	Belongs to the pirin family
ATY42_14240	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ATY42_14245	COG0305	Participates in initiation and elongation during chromosome replication
ATY42_14265	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ATY42_14275	COG2137	regulation of response to DNA damage stimulus
ATY42_14295	COG1546	Belongs to the CinA family
ATY42_14300	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATY42_14305	COG1923	regulation of RNA biosynthetic process
ATY42_14315	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATY42_14320	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATY42_14330	COG1534	Rna-binding protein
ATY42_14345	COG1238	metal cluster binding
ATY42_14360	COG2840	Smr protein MutS2
ATY42_14425	COG1434	Gram-negative-bacterium-type cell wall biogenesis
ATY42_14430	COG0306	phosphate transporter
ATY42_14440	COG1253	flavin adenine dinucleotide binding
ATY42_14455	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ATY42_14460	COG0477	Major facilitator Superfamily
ATY42_14465	COG1132	(ABC) transporter
ATY42_14470	COG1136	(ABC) transporter
ATY42_14490	COG0438	transferase activity, transferring glycosyl groups
ATY42_14500	COG2264	protein methyltransferase activity
ATY42_14530	COG2244	polysaccharide biosynthetic process
ATY42_14580	COG1595	DNA-templated transcription, initiation
ATY42_14595	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ATY42_14615	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY42_14685	COG2201	protein-glutamate methylesterase activity
ATY42_14700	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY42_14705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY42_14735	COG2963	transposase activity
ATY42_14750	COG4644	lycopene metabolic process
ATY42_14760	COG1858	cytochrome C peroxidase
ATY42_14800	COG0515	serine threonine protein kinase
ATY42_14805	COG0631	protein serine/threonine phosphatase activity
ATY42_14840	COG3501	Rhs element vgr protein
ATY42_14850	COG3039	Transposase
ATY42_14905	COG3039	Transposase
ATY42_14920	COG3039	Transposase
ATY42_14950	COG2801	Transposase and inactivated derivatives
ATY42_14960	COG0316	Belongs to the HesB IscA family
ATY42_14960	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ATY42_14965	COG2154	pterin-4-alpha-carbinolamine dehydratase
ATY42_14975	COG0428	transporter
ATY42_14980	COG0428	transporter
ATY42_14995	COG1530	ribonuclease E activity
ATY42_15010	COG3293	Transposase
ATY42_15025	COG3039	Transposase
ATY42_15045	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ATY42_15085	COG3039	Transposase
ATY42_15125	COG1648	precorrin-2 dehydrogenase activity
ATY42_15125	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ATY42_15150	COG0746	molybdenum cofactor guanylyltransferase activity
ATY42_15215	COG4206	TonB-dependent receptor
ATY42_15245	COG4206	TonB-dependent receptor
ATY42_15295	COG0531	amino acid
ATY42_15310	COG0006	proline dipeptidase activity
ATY42_15320	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATY42_15335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY42_15340	COG3938	Belongs to the proline racemase family
ATY42_15350	COG0552	protein localization to endoplasmic reticulum
ATY42_15370	COG0784	Response regulator, receiver
ATY42_15370	COG4191	Histidine kinase
ATY42_15385	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ATY42_15495	COG0438	transferase activity, transferring glycosyl groups
ATY42_15500	COG0438	transferase activity, transferring glycosyl groups
ATY42_15545	COG0776	regulation of translation
ATY42_15560	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ATY42_15565	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATY42_15570	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ATY42_15585	COG2963	transposase activity
ATY42_15605	COG0556	nucleotide-excision repair
ATY42_15610	COG4969	Belongs to the N-Me-Phe pilin family
ATY42_15650	COG1611	Belongs to the LOG family
ATY42_15660	COG2095	MarC family integral membrane protein
ATY42_15670	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ATY42_15675	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATY42_15710	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATY42_15730	COG0195	Participates in both transcription termination and antitermination
ATY42_15745	COG1007	ATP synthesis coupled electron transport
ATY42_15760	COG0713	ATP synthesis coupled electron transport
ATY42_15775	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ATY42_15780	COG1034	ATP synthesis coupled electron transport
ATY42_15785	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ATY42_15790	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
ATY42_15810	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ATY42_15830	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_15845	COG3293	Transposase
ATY42_15920	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATY42_15925	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ATY42_15935	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY42_15955	COG0433	COG0433 Predicted ATPase
ATY42_15960	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_15975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY42_15985	COG0412	Dienelactone hydrolase
ATY42_16005	COG0489	protein tyrosine kinase activity
ATY42_16040	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATY42_16045	COG2311	Membrane
ATY42_16050	COG1047	Peptidyl-prolyl cis-trans
ATY42_16055	COG0791	NLP P60 protein
ATY42_16060	COG0791	NLP P60 protein
ATY42_16075	COG1301	dicarboxylic acid transport
ATY42_16080	COG1785	Belongs to the alkaline phosphatase family
ATY42_16085	COG0037	tRNA processing
ATY42_16095	COG0142	geranyltranstransferase activity
ATY42_16115	COG0312	modulator of DNA gyrase
ATY42_16120	COG3028	Belongs to the UPF0307 family
ATY42_16125	COG0312	modulator of DNA gyrase
ATY42_16130	COG3164	Protein of unknown function
ATY42_16135	COG1530	ribonuclease E activity
ATY42_16145	COG2968	Membrane
ATY42_16185	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATY42_16210	COG3118	belongs to the thioredoxin family
ATY42_16225	COG3293	Transposase
ATY42_16275	COG3293	Transposase
ATY42_16290	COG3039	Transposase
ATY42_16295	COG3039	Transposase
ATY42_16330	COG3293	Transposase
ATY42_16335	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_16360	COG2801	Transposase and inactivated derivatives
ATY42_16370	COG2963	transposase activity
ATY42_16415	COG3273	potassium ion transport
ATY42_16415	COG0471	metal ion transport
ATY42_16445	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_16455	COG1970	mechanosensitive ion channel activity
ATY42_16465	COG3293	Transposase
ATY42_16475	COG2272	Belongs to the type-B carboxylesterase lipase family
ATY42_16480	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATY42_16510	COG0308	aminopeptidase N
ATY42_16515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY42_16525	COG0529	Catalyzes the synthesis of activated sulfate
ATY42_16525	COG2895	sulfate adenylyltransferase (ATP) activity
ATY42_16535	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ATY42_16565	COG0784	Response regulator, receiver
ATY42_16565	COG2198	Histidine kinase
ATY42_16565	COG2205	protein histidine kinase activity
ATY42_16600	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
ATY42_16605	COG3588	fructose-bisphosphate aldolase
ATY42_16610	COG0469	pyruvate kinase activity
ATY42_16650	COG0753	catalase activity
ATY42_16665	COG3039	Transposase
ATY42_16685	COG1917	Cupin 2, conserved barrel domain protein
ATY42_16685	COG2207	Transcriptional regulator
ATY42_16720	COG0823	Involved in the tonB-independent uptake of proteins
ATY42_16720	COG1506	peptidase
ATY42_16740	COG3039	Transposase
ATY42_16745	COG1297	OPT oligopeptide transporter protein
ATY42_16805	COG0406	alpha-ribazole phosphatase activity
ATY42_16805	COG0328	RNA-DNA hybrid ribonuclease activity
ATY42_16845	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ATY42_16860	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY42_16865	COG1708	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity
ATY42_16870	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ATY42_16890	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ATY42_16960	COG3501	Rhs element vgr protein
ATY42_17025	COG3501	Rhs element vgr protein
ATY42_17030	COG3501	Rhs element vgr protein
ATY42_17055	COG3501	Rhs element vgr protein
ATY42_17060	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY42_17125	COG3039	Transposase
ATY42_17130	COG3039	Transposase
ATY42_17140	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY42_17150	COG3501	Rhs element vgr protein
ATY42_17200	COG2963	transposase activity
ATY42_17230	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ATY42_17255	COG2197	response regulator
ATY42_17260	COG4585	Histidine kinase
ATY42_17275	COG2894	cell division
ATY42_17280	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ATY42_17290	COG0642	Histidine kinase
ATY42_17295	COG0745	RESPONSE REGULATOR receiver
ATY42_17300	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ATY42_17310	COG2194	sulfuric ester hydrolase activity
ATY42_17340	COG3551	Protein conserved in bacteria
ATY42_17385	COG2963	transposase activity
ATY42_17395	COG3293	Transposase
ATY42_17410	COG0203	ribosomal protein L17
ATY42_17415	COG0202	RNA polymerase activity
ATY42_17430	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATY42_17435	COG0201	protein transport
ATY42_17445	COG1841	ribosomal large subunit assembly
ATY42_17450	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATY42_17470	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATY42_17490	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATY42_17495	COG0255	Belongs to the universal ribosomal protein uL29 family
ATY42_17500	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ATY42_17525	COG0089	rRNA binding
ATY42_17560	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ATY42_17595	COG0250	Participates in transcription elongation, termination and antitermination
ATY42_17600	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ATY42_17630	COG0012	GTP binding
ATY42_17645	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATY42_17685	COG0521	Mo-molybdopterin cofactor biosynthetic process
ATY42_17705	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATY42_17735	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATY42_17745	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATY42_17775	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ATY42_17780	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY42_17800	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ATY42_17815	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY42_17815	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATY42_17860	COG2890	protein-(glutamine-N5) methyltransferase activity
ATY42_17870	COG3634	alkyl hydroperoxide reductase activity
ATY42_17875	COG0583	DNA-binding transcription factor activity
ATY42_17880	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ATY42_17885	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ATY42_17945	COG4783	chaperone-mediated protein folding
ATY42_17960	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
ATY42_17970	COG0438	transferase activity, transferring glycosyl groups
ATY42_17975	COG0671	phosphoesterase, PA-phosphatase related
ATY42_17990	COG2833	Protein of unknown function (DUF455)
ATY42_18010	COG0285	dihydrofolate synthase activity
ATY42_18015	COG0406	alpha-ribazole phosphatase activity
ATY42_18045	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ATY42_18050	COG4208	sulfate ABC transporter
ATY42_18055	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ATY42_18060	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ATY42_18065	COG0156	8-amino-7-oxononanoate synthase activity
ATY42_18095	COG0446	pyridine nucleotide-disulphide oxidoreductase
ATY42_18095	COG1902	pentaerythritol trinitrate reductase activity
ATY42_18105	COG2963	transposase activity
ATY42_18140	COG0745	RESPONSE REGULATOR receiver
ATY42_18140	COG3706	GGDEF domain
ATY42_18170	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_18180	COG3293	Transposase
ATY42_18225	COG3386	PFAM SMP-30 Gluconolaconase
ATY42_18245	COG1024	Enoyl-CoA hydratase
ATY42_18255	COG0318	PFAM AMP-dependent synthetase and ligase
ATY42_18260	COG0583	DNA-binding transcription factor activity
ATY42_18300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY42_18305	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ATY42_18315	COG2096	Adenosyltransferase
ATY42_18320	COG0123	including yeast histone deacetylase and acetoin utilization protein
ATY42_18335	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ATY42_18390	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATY42_18400	COG0642	Histidine kinase
ATY42_18415	COG4181	ATPase activity
ATY42_18425	COG2175	clavaminate synthase activity
ATY42_18435	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ATY42_18460	COG0667	Aldo Keto reductase
ATY42_18470	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ATY42_18475	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ATY42_18490	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATY42_18495	COG4106	trans-aconitate 2-methyltransferase activity
ATY42_18505	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ATY42_18515	COG3293	Transposase
ATY42_18560	COG2226	methyltransferase
ATY42_18610	COG0604	alcohol dehydrogenase
ATY42_18610	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_18610	COG3321	synthase
ATY42_18620	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ATY42_18635	COG0494	nUDIX hydrolase
ATY42_18650	COG4942	peptidase
ATY42_18650	COG1388	LysM domain
ATY42_18675	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATY42_18680	COG1181	Belongs to the D-alanine--D-alanine ligase family
ATY42_18705	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATY42_18720	COG3116	cell division
ATY42_18760	COG1988	membrane-bound metal-dependent
ATY42_18765	COG0277	FAD linked oxidase domain protein
ATY42_18770	COG0745	RESPONSE REGULATOR receiver
ATY42_18775	COG2205	protein histidine kinase activity
ATY42_18785	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ATY42_18790	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ATY42_18815	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ATY42_18845	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY42_18845	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ATY42_18885	COG0488	(ABC) transporter
ATY42_18930	COG0745	RESPONSE REGULATOR receiver
ATY42_18935	COG2205	protein histidine kinase activity
ATY42_19010	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ATY42_19020	COG2963	transposase activity
ATY42_19025	COG3039	Transposase
ATY42_19030	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATY42_19035	COG3293	Transposase
ATY42_19045	COG3039	Transposase
ATY42_19085	COG3039	Transposase
ATY42_19090	COG3293	Transposase
ATY42_19125	COG0726	polysaccharide deacetylase
ATY42_19125	COG1649	PFAM Uncharacterised BCR, COG1649
ATY42_19130	COG1215	transferase activity, transferring glycosyl groups
ATY42_19140	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ATY42_19145	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATY42_19150	COG1609	Transcriptional regulator
ATY42_19175	COG3250	beta-galactosidase activity
ATY42_19210	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATY42_19215	COG4191	Histidine kinase
ATY42_19220	COG0784	Response regulator, receiver
ATY42_19225	COG4251	negative regulation of phosphorylation
ATY42_19230	COG2823	Periplasmic or secreted lipoprotein
ATY42_19235	COG0673	inositol 2-dehydrogenase activity
ATY42_19240	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
ATY42_19280	COG1056	cytidyltransferase-related domain
ATY42_19280	COG1051	belongs to the nudix hydrolase family
ATY42_19315	COG1686	Belongs to the peptidase S11 family
ATY42_19325	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ATY42_19330	COG2951	lytic endotransglycosylase activity
ATY42_19365	COG0772	Belongs to the SEDS family
ATY42_19380	COG1792	Involved in formation and maintenance of cell shape
ATY42_19385	COG1077	Cell shape determining protein MreB Mrl
ATY42_19440	COG2199	diguanylate cyclase activity
ATY42_19445	COG0308	aminopeptidase N
ATY42_19470	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ATY42_19510	COG1505	serine-type exopeptidase activity
ATY42_19545	COG3275	phosphorelay sensor kinase activity
ATY42_19565	COG3706	GGDEF domain
ATY42_19575	COG0659	secondary active sulfate transmembrane transporter activity
ATY42_19580	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
ATY42_19580	COG5297	Belongs to the glycosyl hydrolase family 6
ATY42_19590	COG0840	transmembrane signaling receptor activity
ATY42_19620	COG3293	Transposase
ATY42_19660	COG0598	Magnesium transport protein CorA
ATY42_19670	COG1113	amino acid transport
ATY42_19675	COG5297	Belongs to the glycosyl hydrolase family 6
ATY42_19680	COG4305	rare lipoprotein A
ATY42_19685	COG0697	spore germination
ATY42_19745	COG4221	oxidoreductase activity
ATY42_19760	COG2963	transposase activity
ATY42_19780	COG0456	acetyltransferase
ATY42_19790	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
ATY42_19820	COG3227	Zinc metalloprotease (Elastase)
ATY42_19835	COG2111	Na H antiporter
ATY42_19835	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ATY42_19840	COG1006	Multisubunit Na H antiporter MnhC subunit
ATY42_19845	COG0651	ATP synthesis coupled electron transport
ATY42_19855	COG2212	antiporter activity
ATY42_19860	COG1320	monovalent cation:proton antiporter activity
ATY42_19865	COG3039	Transposase
ATY42_19890	COG3104	oligopeptide transport
ATY42_19930	COG3293	Transposase
ATY42_19940	COG0183	Belongs to the thiolase family
ATY42_19990	COG3039	Transposase
ATY42_20020	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
ATY42_20025	COG3023	N-Acetylmuramoyl-L-alanine amidase
ATY42_20035	COG4948	Mandelate Racemase Muconate Lactonizing
ATY42_20060	COG3293	Transposase
ATY42_20070	COG0531	amino acid
ATY42_20085	COG3293	Transposase
ATY42_20100	COG4682	membrane
ATY42_20105	COG2133	pyrroloquinoline quinone binding
ATY42_20135	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_20145	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATY42_20155	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATY42_20160	COG1610	YqeY-like protein
ATY42_20165	COG1295	ribonuclease BN
ATY42_20170	COG0358	DNA primase activity
ATY42_20230	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ATY42_20240	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ATY42_20255	COG2963	transposase activity
ATY42_20360	COG2963	transposase activity
ATY42_20365	COG2801	Transposase and inactivated derivatives
ATY42_20420	COG3039	Transposase
ATY42_20440	COG3328	transposase activity
ATY42_20455	COG1473	amidohydrolase
ATY42_20460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATY42_20465	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ATY42_20475	COG5383	Protein conserved in bacteria
ATY42_20505	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATY42_20525	COG0028	Belongs to the TPP enzyme family
ATY42_20530	COG4191	Histidine kinase
ATY42_20555	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ATY42_20570	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ATY42_20575	COG3177	Filamentation induced by cAMP protein fic
ATY42_20590	COG0596	Alpha beta hydrolase
ATY42_20600	COG0318	PFAM AMP-dependent synthetase and ligase
ATY42_20605	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ATY42_20630	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ATY42_20670	COG3039	Transposase
ATY42_20700	COG2801	Transposase and inactivated derivatives
ATY42_20705	COG2963	transposase activity
ATY42_20790	COG2353	YceI-like domain
ATY42_20825	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ATY42_20840	COG3386	PFAM SMP-30 Gluconolaconase
ATY42_20885	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATY42_20895	COG4771	TonB-dependent receptor
ATY42_20910	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ATY42_20935	COG1252	NADH dehydrogenase
ATY42_20945	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATY42_20955	COG2201	protein-glutamate methylesterase activity
ATY42_20960	COG2177	Part of the ABC transporter FtsEX involved in
ATY42_20965	COG2884	Cell division ATP-binding protein ftsE
ATY42_20975	COG3118	belongs to the thioredoxin family
ATY42_20980	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ATY42_21000	COG0729	surface antigen
ATY42_21005	COG2911	Protein conserved in bacteria
ATY42_21035	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ATY42_21050	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATY42_21105	COG1733	regulation of RNA biosynthetic process
ATY42_21110	COG0702	epimerase
ATY42_21140	COG0583	DNA-binding transcription factor activity
ATY42_21145	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATY42_21155	COG2205	protein histidine kinase activity
ATY42_21160	COG2205	protein histidine kinase activity
ATY42_21165	COG0745	RESPONSE REGULATOR receiver
ATY42_21185	COG1902	pentaerythritol trinitrate reductase activity
ATY42_21190	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ATY42_21200	COG2814	Major facilitator Superfamily
ATY42_21205	COG0583	DNA-binding transcription factor activity
ATY42_21215	COG0084	hydrolase, TatD family'
ATY42_21245	COG3293	Transposase
ATY42_21265	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ATY42_21320	COG2826	transposase and inactivated derivatives, IS30 family
ATY42_21335	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ATY42_21340	COG1960	acyl-CoA dehydrogenase activity
ATY42_21400	COG0523	cobalamin synthesis protein
ATY42_21410	COG0697	spore germination
ATY42_21420	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ATY42_21435	COG4771	TonB-dependent receptor
ATY42_21440	COG0457	Tetratricopeptide repeat
ATY42_21455	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATY42_21470	COG0519	Catalyzes the synthesis of GMP from XMP
ATY42_21470	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ATY42_21480	COG0805	protein transport
ATY42_21490	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATY42_21500	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ATY42_21540	COG3661	Belongs to the glycosyl hydrolase 67 family
ATY42_21550	COG4948	Mandelate Racemase Muconate Lactonizing
ATY42_21560	COG1472	Belongs to the glycosyl hydrolase 3 family
ATY42_21565	COG0246	Mannitol dehydrogenase
ATY42_21590	COG3693	PFAM glycoside hydrolase, family 10
ATY42_21595	COG3693	PFAM glycoside hydrolase, family 10
ATY42_21615	COG2211	Major facilitator Superfamily
ATY42_21645	COG3293	Transposase
ATY42_21700	COG1846	Transcriptional regulator
ATY42_21705	COG1764	response to oxidative stress
ATY42_21790	COG3549	Plasmid maintenance system killer
ATY42_21800	COG1074	ATP-dependent DNA helicase activity
ATY42_21805	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ATY42_21845	COG2032	superoxide dismutase activity
ATY42_21850	COG2032	superoxide dismutase activity
ATY42_21855	COG2204	response regulator
ATY42_21860	COG3852	Histidine kinase
ATY42_21865	COG0004	ammonium transporteR
ATY42_21870	COG0347	Belongs to the P(II) protein family
ATY42_21875	COG0174	glutamine synthetase
ATY42_21925	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY42_21935	COG2062	phosphohistidine phosphatase, SixA
ATY42_21940	COG0489	protein tyrosine kinase activity
ATY42_21960	COG1396	sequence-specific DNA binding
ATY42_21965	COG3550	peptidyl-serine autophosphorylation
ATY42_21970	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ATY42_21975	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ATY42_21990	COG0517	IMP dehydrogenase activity
ATY42_21990	COG1125	glycine betaine transport
ATY42_22005	COG1119	ATPase activity
ATY42_22015	COG1752	Esterase of the alpha-beta hydrolase superfamily
ATY42_22030	COG3039	Transposase
ATY42_22040	COG2963	transposase activity
ATY42_22055	COG0656	L-ascorbic acid biosynthetic process
ATY42_22060	COG2130	NADP-dependent
ATY42_22065	COG0667	Aldo Keto reductase
ATY42_22075	COG1187	pseudouridine synthase activity
ATY42_22090	COG1643	Atp-dependent helicase
ATY42_22095	COG4807	Protein conserved in bacteria
ATY42_22100	COG4948	Mandelate Racemase Muconate Lactonizing
ATY42_22105	COG0179	Fumarylacetoacetate (FAA) hydrolase
ATY42_22110	COG1028	Short-chain dehydrogenase reductase Sdr
ATY42_22130	COG3507	Belongs to the glycosyl hydrolase 43 family
ATY42_22170	COG3162	membrane
ATY42_22175	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ATY42_22185	COG0708	Exodeoxyribonuclease III
ATY42_22200	COG2091	lysine biosynthetic process via aminoadipic acid
ATY42_22210	COG3540	Alkaline phosphatase
ATY42_22230	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATY42_22235	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATY42_22260	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ATY42_22265	COG0583	DNA-binding transcription factor activity
ATY42_22270	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATY42_22285	COG0210	DNA helicase
ATY42_22300	COG0531	amino acid
ATY42_22305	COG1322	Protein conserved in bacteria
ATY42_22315	COG0386	Belongs to the glutathione peroxidase family
ATY42_22370	COG0793	Belongs to the peptidase S41A family
ATY42_22375	COG4942	peptidase
ATY42_22385	COG2234	aminopeptidase activity
ATY42_22435	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATY42_22440	COG0302	gtp cyclohydrolase
ATY42_22465	COG0477	Major facilitator Superfamily
ATY42_22540	COG1929	Belongs to the glycerate kinase type-1 family
ATY42_22545	COG2271	Major facilitator Superfamily
ATY42_22560	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATY42_22565	COG0861	Integral membrane protein TerC family
ATY42_22575	COG0584	glycerophosphoryl diester phosphodiesterase
ATY42_22585	COG0671	phosphoesterase, PA-phosphatase related
ATY42_22595	COG0726	polysaccharide deacetylase
ATY42_22610	COG0230	Belongs to the bacterial ribosomal protein bL34 family