ATY42_00080	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_00085	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_00085	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
ATY42_00085	PWY-6638	sulfolactate degradation III
ATY42_00085	PWY-6642	(<i>R</i>)-cysteate degradation
ATY42_00085	PWY-6643	coenzyme M biosynthesis II
ATY42_00085	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_00085	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_00085	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_00110	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_00125	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_00125	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_00125	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_00125	PWY-6113	superpathway of mycolate biosynthesis
ATY42_00125	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_00125	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_00125	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_00125	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_00125	PWY-7858	ATY42_00125
ATY42_00125	PWYG-321	mycolate biosynthesis
ATY42_00315	PWY-2661	trehalose biosynthesis V
ATY42_00320	PWY-5941	glycogen degradation II (eukaryotic)
ATY42_00320	PWY-6724	starch degradation II
ATY42_00320	PWY-6737	starch degradation V
ATY42_00320	PWY-7238	sucrose biosynthesis II
ATY42_00325	PWY-2661	trehalose biosynthesis V
ATY42_00330	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_00330	PWY-622	starch biosynthesis
ATY42_00330	PWY-7900	ATY42_00330
ATY42_00335	PWY-622	starch biosynthesis
ATY42_00425	PWY-7980	ATY42_00425
ATY42_00795	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_00800	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_00825	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
ATY42_00825	PWY-622	starch biosynthesis
ATY42_00825	PWY-7900	ATY42_00825
ATY42_00830	PWY-2622	trehalose biosynthesis IV
ATY42_00830	PWY-7900	ATY42_00830
ATY42_00835	PWY-7900	ATY42_00835
ATY42_00900	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
ATY42_00920	PWY-40	putrescine biosynthesis I
ATY42_00920	PWY-43	putrescine biosynthesis II
ATY42_00920	PWY-6305	putrescine biosynthesis IV
ATY42_00920	PWY-6834	spermidine biosynthesis III
ATY42_00990	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_01000	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_01030	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY42_01055	PWY-5686	UMP biosynthesis
ATY42_01055	PWY-7790	ATY42_01055
ATY42_01055	PWY-7791	ATY42_01055
ATY42_01085	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_01085	PWY-6453	stigma estolide biosynthesis
ATY42_01085	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY42_01085	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY42_01130	PWY-6134	L-tyrosine biosynthesis IV
ATY42_01130	PWY-7158	L-phenylalanine degradation V
ATY42_01245	PWY-5874	heme degradation
ATY42_01435	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_01435	PWY-6416	quinate degradation II
ATY42_01435	PWY-6707	gallate biosynthesis
ATY42_01460	PWY-5530	sorbitol biosynthesis II
ATY42_01660	PWY-6654	phosphopantothenate biosynthesis III
ATY42_01770	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_01770	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_01800	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_01895	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY42_01895	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY42_01900	PWY-3961	phosphopantothenate biosynthesis II
ATY42_01915	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_01915	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_01915	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_01915	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY42_01915	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_01915	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_01935	PWY-31	canavanine degradation
ATY42_01935	PWY-4984	urea cycle
ATY42_01935	PWY-6305	putrescine biosynthesis IV
ATY42_01935	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_02050	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY42_02055	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_02055	PWY-6578	8-amino-7-oxononanoate biosynthesis III
ATY42_02055	PWY-7147	8-amino-7-oxononanoate biosynthesis II
ATY42_02115	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_02140	PWY-5392	reductive TCA cycle II
ATY42_02140	PWY-5537	pyruvate fermentation to acetate V
ATY42_02140	PWY-5538	pyruvate fermentation to acetate VI
ATY42_02140	PWY-5690	TCA cycle II (plants and fungi)
ATY42_02140	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_02140	PWY-6728	methylaspartate cycle
ATY42_02140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_02140	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_02150	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_02150	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_02150	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_02150	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_02150	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_02150	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_02150	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_02150	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_02155	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_02155	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_02155	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_02155	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_02155	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_02155	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_02155	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_02155	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_02190	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_02190	PWY-2361	3-oxoadipate degradation
ATY42_02190	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY42_02195	PWY-6041	4-sulfocatechol degradation
ATY42_02200	PWY-6041	4-sulfocatechol degradation
ATY42_02205	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_02205	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_02205	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_02205	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_02210	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
ATY42_02265	PWY-7851	ATY42_02265
ATY42_02275	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_02320	PWY-5686	UMP biosynthesis
ATY42_02320	PWY-7790	ATY42_02320
ATY42_02320	PWY-7791	ATY42_02320
ATY42_02340	PWY-7883	ATY42_02340
ATY42_02440	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_02440	PWY-7761	ATY42_02440
ATY42_02495	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_02495	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_02495	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_02505	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_02505	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_02505	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_02590	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_02590	PWY-6416	quinate degradation II
ATY42_02590	PWY-6707	gallate biosynthesis
ATY42_02760	PWY-6168	flavin biosynthesis III (fungi)
ATY42_02760	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_02760	PWY-7991	ATY42_02760
ATY42_03225	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_03365	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY42_03365	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_03405	PWY-7980	ATY42_03405
ATY42_03415	PWY-7980	ATY42_03415
ATY42_03425	PWY-3461	L-tyrosine biosynthesis II
ATY42_03425	PWY-3462	L-phenylalanine biosynthesis II
ATY42_03425	PWY-6120	L-tyrosine biosynthesis III
ATY42_03425	PWY-6627	salinosporamide A biosynthesis
ATY42_03425	PWY-7626	bacilysin biosynthesis
ATY42_03435	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_03480	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_03510	PWY-5386	methylglyoxal degradation I
ATY42_03550	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_03550	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_03550	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_03550	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_03550	PWY-6113	superpathway of mycolate biosynthesis
ATY42_03550	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_03550	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_03550	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_03550	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_03550	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_03550	PWY-7858	ATY42_03550
ATY42_03550	PWYG-321	mycolate biosynthesis
ATY42_03560	PWY-181	photorespiration
ATY42_03575	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
ATY42_03700	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY42_03700	PWY-6808	dTDP-D-forosamine biosynthesis
ATY42_03700	PWY-6942	dTDP-D-desosamine biosynthesis
ATY42_03700	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_03700	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY42_03700	PWY-6974	dTDP-L-olivose biosynthesis
ATY42_03700	PWY-6976	dTDP-L-mycarose biosynthesis
ATY42_03700	PWY-7104	dTDP-L-megosamine biosynthesis
ATY42_03700	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY42_03700	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY42_03700	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY42_03700	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY42_03700	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY42_03700	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY42_03700	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY42_03700	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY42_03700	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY42_03700	PWY-7688	ATY42_03700
ATY42_03700	PWY-7814	ATY42_03700
ATY42_03705	PWY-3221	dTDP-L-rhamnose biosynthesis II
ATY42_03705	PWY-6808	dTDP-D-forosamine biosynthesis
ATY42_03705	PWY-6942	dTDP-D-desosamine biosynthesis
ATY42_03705	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_03705	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
ATY42_03705	PWY-6974	dTDP-L-olivose biosynthesis
ATY42_03705	PWY-6976	dTDP-L-mycarose biosynthesis
ATY42_03705	PWY-7104	dTDP-L-megosamine biosynthesis
ATY42_03705	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
ATY42_03705	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
ATY42_03705	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
ATY42_03705	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
ATY42_03705	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
ATY42_03705	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
ATY42_03705	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
ATY42_03705	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
ATY42_03705	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
ATY42_03705	PWY-7688	ATY42_03705
ATY42_03705	PWY-7814	ATY42_03705
ATY42_03720	PWY-5659	GDP-mannose biosynthesis
ATY42_03720	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
ATY42_03725	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_03795	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY42_03870	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_03920	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_03920	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_03920	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_04100	PWY-4381	fatty acid biosynthesis initiation I
ATY42_04110	PWY-4381	fatty acid biosynthesis initiation I
ATY42_04110	PWY-6799	fatty acid biosynthesis (plant mitochondria)
ATY42_04110	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_04115	PWY-5367	petroselinate biosynthesis
ATY42_04115	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_04115	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_04115	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_04115	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_04115	PWY-6113	superpathway of mycolate biosynthesis
ATY42_04115	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_04115	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_04115	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_04115	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_04115	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_04115	PWY-7858	ATY42_04115
ATY42_04115	PWYG-321	mycolate biosynthesis
ATY42_04130	PWY-5958	acridone alkaloid biosynthesis
ATY42_04130	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_04130	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_04165	PWY-5747	2-methylcitrate cycle II
ATY42_04270	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_04325	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY42_04380	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY42_04385	PWY-6871	3-methylbutanol biosynthesis
ATY42_04400	PWY-5101	L-isoleucine biosynthesis II
ATY42_04400	PWY-5103	L-isoleucine biosynthesis III
ATY42_04400	PWY-5104	L-isoleucine biosynthesis IV
ATY42_04400	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
ATY42_04400	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
ATY42_04400	PWY-6389	(<i>S</i>)-acetoin biosynthesis
ATY42_04400	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_04405	PWY-5103	L-isoleucine biosynthesis III
ATY42_04405	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_04410	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
ATY42_04435	PWY-7805	ATY42_04435
ATY42_04435	PWY-7807	ATY42_04435
ATY42_04470	PWY-1042	glycolysis IV (plant cytosol)
ATY42_04470	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_04470	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_04470	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_04475	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_04480	PWY-7883	ATY42_04480
ATY42_04510	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_04510	PWY-5392	reductive TCA cycle II
ATY42_04510	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_04510	PWY-5690	TCA cycle II (plants and fungi)
ATY42_04510	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_04510	PWY-6728	methylaspartate cycle
ATY42_04510	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_04510	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_04510	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_04530	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
ATY42_04540	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_04850	PWY-5386	methylglyoxal degradation I
ATY42_04950	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
ATY42_04950	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
ATY42_04960	PWY-6823	molybdenum cofactor biosynthesis
ATY42_04970	PWY-6823	molybdenum cofactor biosynthesis
ATY42_04980	PWY-6823	molybdenum cofactor biosynthesis
ATY42_04980	PWY-7887	ATY42_04980
ATY42_05055	PWY-6717	(1,4)-&beta;-xylan degradation
ATY42_05055	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_05060	PWY-6769	rhamnogalacturonan type I degradation I (fungi)
ATY42_05060	PWY-6771	rhamnogalacturonan type I degradation II (bacteria)
ATY42_05160	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY42_05160	PWY-5741	ethylmalonyl-CoA pathway
ATY42_05160	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_05160	PWY-7948	ATY42_05160
ATY42_05245	PWY-1281	sulfoacetaldehyde degradation I
ATY42_05245	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_05245	PWY-5482	pyruvate fermentation to acetate II
ATY42_05245	PWY-5485	pyruvate fermentation to acetate IV
ATY42_05245	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_05245	PWY-6637	sulfolactate degradation II
ATY42_05245	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_05285	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_05285	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_05285	PWY-6897	thiamin salvage II
ATY42_05285	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY42_05285	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY42_05285	PWY-7356	thiamin salvage IV (yeast)
ATY42_05285	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_05305	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_05305	PWY-5723	Rubisco shunt
ATY42_05335	PWY-7799	ATY42_05335
ATY42_05335	PWY-7800	ATY42_05335
ATY42_05395	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_05450	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_05450	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_05450	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_05450	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_05535	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_05535	PWY-5723	Rubisco shunt
ATY42_05535	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_05535	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_05535	PWY-6901	superpathway of glucose and xylose degradation
ATY42_05535	PWY-7560	methylerythritol phosphate pathway II
ATY42_05670	PWY-1042	glycolysis IV (plant cytosol)
ATY42_05670	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_05670	PWY-6901	superpathway of glucose and xylose degradation
ATY42_05670	PWY-7003	glycerol degradation to butanol
ATY42_05805	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_05895	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
ATY42_05895	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY42_05895	PWY-7766	ATY42_05895
ATY42_05905	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_05910	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_05915	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY42_05915	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_06130	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_06130	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_06145	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_06145	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_06145	PWY-7953	ATY42_06145
ATY42_06165	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_06165	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY42_06180	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_06180	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_06180	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_06280	PWY-6317	galactose degradation I (Leloir pathway)
ATY42_06305	PWY-723	alkylnitronates degradation
ATY42_06325	PWY-6829	tRNA methylation (yeast)
ATY42_06325	PWY-7285	methylwyosine biosynthesis
ATY42_06325	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
ATY42_06425	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_06425	PWY-7962	ATY42_06425
ATY42_06425	PWY-7971	ATY42_06425
ATY42_06425	PWY-7972	ATY42_06425
ATY42_06430	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_06430	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_06430	PWY-7964	ATY42_06430
ATY42_06430	PWY-7965	ATY42_06430
ATY42_06430	PWY-7966	ATY42_06430
ATY42_06430	PWY-7967	ATY42_06430
ATY42_06430	PWY-7968	ATY42_06430
ATY42_06430	PWY-7969	ATY42_06430
ATY42_06430	PWY-7970	ATY42_06430
ATY42_06440	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
ATY42_06440	PWY-6269	adenosylcobalamin salvage from cobinamide II
ATY42_06440	PWY-7961	ATY42_06440
ATY42_06440	PWY-7963	ATY42_06440
ATY42_06440	PWY-7964	ATY42_06440
ATY42_06440	PWY-7965	ATY42_06440
ATY42_06440	PWY-7966	ATY42_06440
ATY42_06440	PWY-7967	ATY42_06440
ATY42_06440	PWY-7968	ATY42_06440
ATY42_06440	PWY-7969	ATY42_06440
ATY42_06440	PWY-7970	ATY42_06440
ATY42_06440	PWY-7975	ATY42_06440
ATY42_06655	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
ATY42_06725	PWY-3341	L-proline biosynthesis III
ATY42_06725	PWY-4981	L-proline biosynthesis II (from arginine)
ATY42_06725	PWY-6344	L-ornithine degradation II (Stickland reaction)
ATY42_06730	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_06785	PWY-5686	UMP biosynthesis
ATY42_06785	PWY-7790	ATY42_06785
ATY42_06785	PWY-7791	ATY42_06785
ATY42_06815	PWY-2941	L-lysine biosynthesis II
ATY42_06815	PWY-2942	L-lysine biosynthesis III
ATY42_06815	PWY-5097	L-lysine biosynthesis VI
ATY42_06815	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY42_06815	PWY-6559	spermidine biosynthesis II
ATY42_06815	PWY-6562	norspermidine biosynthesis
ATY42_06815	PWY-7153	grixazone biosynthesis
ATY42_06815	PWY-7977	ATY42_06815
ATY42_06830	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_06830	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_06990	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_06990	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_07145	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_07510	PWY-7851	ATY42_07510
ATY42_07575	PWY-5392	reductive TCA cycle II
ATY42_07575	PWY-5537	pyruvate fermentation to acetate V
ATY42_07575	PWY-5538	pyruvate fermentation to acetate VI
ATY42_07575	PWY-5690	TCA cycle II (plants and fungi)
ATY42_07575	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_07575	PWY-6728	methylaspartate cycle
ATY42_07575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_07575	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_07580	PWY-5392	reductive TCA cycle II
ATY42_07580	PWY-5537	pyruvate fermentation to acetate V
ATY42_07580	PWY-5538	pyruvate fermentation to acetate VI
ATY42_07580	PWY-5690	TCA cycle II (plants and fungi)
ATY42_07580	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_07580	PWY-6728	methylaspartate cycle
ATY42_07580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_07580	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_07590	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_07590	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_07590	PWY-7761	ATY42_07590
ATY42_07665	PWY-7802	ATY42_07665
ATY42_07745	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
ATY42_07745	PWY-6167	flavin biosynthesis II (archaea)
ATY42_07745	PWY-6168	flavin biosynthesis III (fungi)
ATY42_07745	PWY-7863	ATY42_07745
ATY42_07755	PWY-7884	ATY42_07755
ATY42_07760	PWY-7560	methylerythritol phosphate pathway II
ATY42_07775	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_07775	PWY-4521	arsenite oxidation I (respiratory)
ATY42_07775	PWY-6692	Fe(II) oxidation
ATY42_07775	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_07775	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
ATY42_07895	PWY-7782	ATY42_07895
ATY42_07895	PWY-7783	ATY42_07895
ATY42_08000	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_08060	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_08100	PWY-2722	trehalose degradation IV
ATY42_08100	PWY-2723	trehalose degradation V
ATY42_08100	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_08100	PWY-5661	GDP-glucose biosynthesis
ATY42_08100	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_08100	PWY-7238	sucrose biosynthesis II
ATY42_08100	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_08105	PWY-2722	trehalose degradation IV
ATY42_08105	PWY-2723	trehalose degradation V
ATY42_08105	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_08105	PWY-5661	GDP-glucose biosynthesis
ATY42_08105	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_08105	PWY-7238	sucrose biosynthesis II
ATY42_08105	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_08110	PWY-2722	trehalose degradation IV
ATY42_08110	PWY-2723	trehalose degradation V
ATY42_08110	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_08110	PWY-5661	GDP-glucose biosynthesis
ATY42_08110	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_08110	PWY-7238	sucrose biosynthesis II
ATY42_08110	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_08145	PWY-6420	pyrroloquinoline quinone biosynthesis
ATY42_08170	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_08170	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_08170	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_08170	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_08320	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_08395	PWY-6902	chitin degradation II
ATY42_08395	PWY-7822	ATY42_08395
ATY42_08395	PWY-7883	ATY42_08395
ATY42_08405	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_08415	PWY-2722	trehalose degradation IV
ATY42_08415	PWY-2723	trehalose degradation V
ATY42_08415	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_08415	PWY-5661	GDP-glucose biosynthesis
ATY42_08415	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_08415	PWY-7238	sucrose biosynthesis II
ATY42_08415	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_08490	PWY-7094	fatty acid salvage
ATY42_08490	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY42_08520	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_08520	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_08520	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_08520	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_08560	PWY-801	L-homocysteine and L-cysteine interconversion
ATY42_08625	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_08635	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_08640	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_08660	PWY-5642	2,4-dinitrotoluene degradation
ATY42_08690	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_08690	PWY-5109	2-methylbutanoate biosynthesis
ATY42_08690	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY42_08690	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY42_08690	PWY-5177	glutaryl-CoA degradation
ATY42_08690	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_08690	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY42_08690	PWY-6583	pyruvate fermentation to butanol I
ATY42_08690	PWY-6863	pyruvate fermentation to hexanol
ATY42_08690	PWY-6883	pyruvate fermentation to butanol II
ATY42_08690	PWY-6944	androstenedione degradation
ATY42_08690	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_08690	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_08690	PWY-7007	methyl ketone biosynthesis
ATY42_08690	PWY-7046	4-coumarate degradation (anaerobic)
ATY42_08690	PWY-7094	fatty acid salvage
ATY42_08690	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_08690	PWY-735	jasmonic acid biosynthesis
ATY42_08690	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY42_08690	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY42_08690	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY42_08690	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ATY42_08690	PWY-7726	ATY42_08690
ATY42_08690	PWY-7778	ATY42_08690
ATY42_08690	PWY-7779	ATY42_08690
ATY42_08780	PWY-6902	chitin degradation II
ATY42_08780	PWY-7822	ATY42_08780
ATY42_08780	PWY-7883	ATY42_08780
ATY42_09230	PWY-4381	fatty acid biosynthesis initiation I
ATY42_09230	PWY-5743	3-hydroxypropanoate cycle
ATY42_09230	PWY-5744	glyoxylate assimilation
ATY42_09230	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_09230	PWY-6722	candicidin biosynthesis
ATY42_09255	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_09255	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_09255	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_09255	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_09255	PWY-6113	superpathway of mycolate biosynthesis
ATY42_09255	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_09255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_09255	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_09255	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_09255	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_09255	PWY-7858	ATY42_09255
ATY42_09255	PWYG-321	mycolate biosynthesis
ATY42_09275	PWY-7560	methylerythritol phosphate pathway II
ATY42_09280	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_09280	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_09280	PWY-7817	ATY42_09280
ATY42_09345	PWY-7799	ATY42_09345
ATY42_09345	PWY-7800	ATY42_09345
ATY42_09485	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_09485	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_09485	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_09485	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_09490	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_09490	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_09490	PWY-7560	methylerythritol phosphate pathway II
ATY42_09570	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
ATY42_09570	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_09575	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
ATY42_09610	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
ATY42_09610	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_09615	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_09620	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
ATY42_09645	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_09645	PWY-6124	inosine-5'-phosphate biosynthesis II
ATY42_09645	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_09645	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_09685	PWY-5392	reductive TCA cycle II
ATY42_09685	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_09685	PWY-5690	TCA cycle II (plants and fungi)
ATY42_09685	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_09685	PWY-6728	methylaspartate cycle
ATY42_09685	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_09685	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_09685	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_09735	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
ATY42_09735	PWY-7820	ATY42_09735
ATY42_09775	PWY-2201	folate transformations I
ATY42_09775	PWY-3841	folate transformations II
ATY42_09775	PWY-7977	ATY42_09775
ATY42_09825	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_09970	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
ATY42_10070	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_10070	PWY-5389	3-methylthiopropanoate biosynthesis
ATY42_10075	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_10180	PWY-7942	ATY42_10180
ATY42_10245	PWY-5941	glycogen degradation II (eukaryotic)
ATY42_10245	PWY-6724	starch degradation II
ATY42_10245	PWY-6737	starch degradation V
ATY42_10245	PWY-7238	sucrose biosynthesis II
ATY42_10270	PWY-43	putrescine biosynthesis II
ATY42_10285	PWY-7205	CMP phosphorylation
ATY42_10310	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_10310	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_10310	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_10320	PWY-3801	sucrose degradation II (sucrose synthase)
ATY42_10320	PWY-6527	stachyose degradation
ATY42_10320	PWY-7238	sucrose biosynthesis II
ATY42_10320	PWY-7343	UDP-glucose biosynthesis
ATY42_10320	PWY-7817	ATY42_10320
ATY42_10360	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
ATY42_10360	PWY-2201	folate transformations I
ATY42_10360	PWY-3841	folate transformations II
ATY42_10360	PWY-5030	L-histidine degradation III
ATY42_10360	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_10360	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
ATY42_10360	PWY-7909	ATY42_10360
ATY42_10365	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_10365	PWY-6596	adenosine nucleotides degradation I
ATY42_10365	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_10370	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_10450	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_10450	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_10465	PWY-6502	oxidized GTP and dGTP detoxification
ATY42_10570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_10570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_10580	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_10580	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_10580	PWY-7953	ATY42_10580
ATY42_10585	PWY-5686	UMP biosynthesis
ATY42_10615	PWY-2941	L-lysine biosynthesis II
ATY42_10615	PWY-2942	L-lysine biosynthesis III
ATY42_10615	PWY-5097	L-lysine biosynthesis VI
ATY42_10615	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY42_10615	PWY-6559	spermidine biosynthesis II
ATY42_10615	PWY-6562	norspermidine biosynthesis
ATY42_10615	PWY-7153	grixazone biosynthesis
ATY42_10615	PWY-7977	ATY42_10615
ATY42_10620	PWY-702	L-methionine biosynthesis II
ATY42_11000	PWY-5269	cardiolipin biosynthesis II
ATY42_11000	PWY-5668	cardiolipin biosynthesis I
ATY42_11000	PWY-7817	ATY42_11000
ATY42_11020	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_11080	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_11080	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY42_11080	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_11080	PWY-5690	TCA cycle II (plants and fungi)
ATY42_11080	PWY-6728	methylaspartate cycle
ATY42_11080	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_11080	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_11080	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_11090	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_11090	PWY-4302	aerobic respiration III (alternative oxidase pathway)
ATY42_11090	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_11090	PWY-5690	TCA cycle II (plants and fungi)
ATY42_11090	PWY-6728	methylaspartate cycle
ATY42_11090	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_11090	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_11090	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_11115	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_11120	PWY-2722	trehalose degradation IV
ATY42_11120	PWY-2723	trehalose degradation V
ATY42_11120	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_11120	PWY-5661	GDP-glucose biosynthesis
ATY42_11120	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_11120	PWY-7238	sucrose biosynthesis II
ATY42_11120	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_11125	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_11125	PWY-6855	chitin degradation I (archaea)
ATY42_11125	PWY-6906	chitin derivatives degradation
ATY42_11130	PWY-5101	L-isoleucine biosynthesis II
ATY42_11130	PWY-5103	L-isoleucine biosynthesis III
ATY42_11130	PWY-5104	L-isoleucine biosynthesis IV
ATY42_11130	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_11135	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_11135	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_11135	PWY-7242	D-fructuronate degradation
ATY42_11135	PWY-7310	D-glucosaminate degradation
ATY42_11135	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY42_11230	PWY-6803	phosphatidylcholine acyl editing
ATY42_11230	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
ATY42_11230	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
ATY42_11230	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY42_11230	PWY-7783	ATY42_11230
ATY42_11240	PWY-5392	reductive TCA cycle II
ATY42_11240	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
ATY42_11240	PWY-5690	TCA cycle II (plants and fungi)
ATY42_11240	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_11240	PWY-6728	methylaspartate cycle
ATY42_11240	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_11240	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_11240	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
ATY42_11370	PWY-3801	sucrose degradation II (sucrose synthase)
ATY42_11370	PWY-5054	sorbitol biosynthesis I
ATY42_11370	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
ATY42_11370	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
ATY42_11370	PWY-5659	GDP-mannose biosynthesis
ATY42_11370	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_11370	PWY-621	sucrose degradation III (sucrose invertase)
ATY42_11370	PWY-622	starch biosynthesis
ATY42_11370	PWY-6981	chitin biosynthesis
ATY42_11370	PWY-6992	1,5-anhydrofructose degradation
ATY42_11370	PWY-7238	sucrose biosynthesis II
ATY42_11370	PWY-7347	sucrose biosynthesis III
ATY42_11370	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_11375	PWY-5155	&beta;-alanine biosynthesis III
ATY42_11385	PWY-6654	phosphopantothenate biosynthesis III
ATY42_11390	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_11390	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_11390	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_11390	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_11390	PWY-7852	ATY42_11390
ATY42_11390	PWY-7853	ATY42_11390
ATY42_11405	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY42_11405	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY42_11405	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_11405	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_11405	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY42_11405	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY42_11405	PWY-7852	ATY42_11405
ATY42_11480	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_11485	PWY-3461	L-tyrosine biosynthesis II
ATY42_11485	PWY-3462	L-phenylalanine biosynthesis II
ATY42_11485	PWY-6120	L-tyrosine biosynthesis III
ATY42_11485	PWY-6627	salinosporamide A biosynthesis
ATY42_11485	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
ATY42_11485	PWY-7626	bacilysin biosynthesis
ATY42_11540	PWY-5028	L-histidine degradation II
ATY42_11540	PWY-5030	L-histidine degradation III
ATY42_11545	PWY-5028	L-histidine degradation II
ATY42_11545	PWY-5030	L-histidine degradation III
ATY42_11555	PWY-5028	L-histidine degradation II
ATY42_11555	PWY-5030	L-histidine degradation III
ATY42_11585	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
ATY42_11585	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
ATY42_11670	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_11670	PWY-5743	3-hydroxypropanoate cycle
ATY42_11670	PWY-5744	glyoxylate assimilation
ATY42_11670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_11670	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_11670	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_11670	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_11675	PWY-5647	2-nitrobenzoate degradation I
ATY42_11675	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_11675	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_11675	PWY-6505	L-tryptophan degradation XII (Geobacillus)
ATY42_11685	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_11685	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_11690	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
ATY42_11690	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
ATY42_11690	PWY-7717	ATY42_11690
ATY42_11690	PWY-7765	ATY42_11690
ATY42_11715	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_11715	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_11715	PWY-6596	adenosine nucleotides degradation I
ATY42_11715	PWY-6606	guanosine nucleotides degradation II
ATY42_11715	PWY-6607	guanosine nucleotides degradation I
ATY42_11715	PWY-6608	guanosine nucleotides degradation III
ATY42_11715	PWY-7185	UTP and CTP dephosphorylation I
ATY42_11715	PWY-7821	ATY42_11715
ATY42_11720	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY42_11720	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_11720	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
ATY42_11805	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_11805	PWY-5743	3-hydroxypropanoate cycle
ATY42_11805	PWY-5744	glyoxylate assimilation
ATY42_11805	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_11805	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_11805	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_11805	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_11935	PWY-6700	queuosine biosynthesis
ATY42_11940	PWY-6700	queuosine biosynthesis
ATY42_11985	PWY-4702	phytate degradation I
ATY42_12000	PWY-7183	pyrimidine nucleobases salvage I
ATY42_12020	PWY-4041	&gamma;-glutamyl cycle
ATY42_12020	PWY-4061	glutathione-mediated detoxification I
ATY42_12020	PWY-5826	hypoglycin biosynthesis
ATY42_12020	PWY-6842	glutathione-mediated detoxification II
ATY42_12020	PWY-7112	4-hydroxy-2-nonenal detoxification
ATY42_12020	PWY-7559	glutathione degradation (DUG pathway - yeast)
ATY42_12040	PWY-7851	ATY42_12040
ATY42_12140	PWY-6823	molybdenum cofactor biosynthesis
ATY42_12175	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
ATY42_12175	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY42_12175	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_12175	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_12175	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
ATY42_12175	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_12175	PWY-7205	CMP phosphorylation
ATY42_12175	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_12175	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_12175	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
ATY42_12175	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_12175	PWY-7224	purine deoxyribonucleosides salvage
ATY42_12175	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_12175	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
ATY42_12185	PWY-1361	benzoyl-CoA degradation I (aerobic)
ATY42_12185	PWY-5109	2-methylbutanoate biosynthesis
ATY42_12185	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
ATY42_12185	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
ATY42_12185	PWY-5177	glutaryl-CoA degradation
ATY42_12185	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_12185	PWY-6435	4-hydroxybenzoate biosynthesis V
ATY42_12185	PWY-6583	pyruvate fermentation to butanol I
ATY42_12185	PWY-6863	pyruvate fermentation to hexanol
ATY42_12185	PWY-6883	pyruvate fermentation to butanol II
ATY42_12185	PWY-6944	androstenedione degradation
ATY42_12185	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_12185	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_12185	PWY-7007	methyl ketone biosynthesis
ATY42_12185	PWY-7046	4-coumarate degradation (anaerobic)
ATY42_12185	PWY-7094	fatty acid salvage
ATY42_12185	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_12185	PWY-735	jasmonic acid biosynthesis
ATY42_12185	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
ATY42_12185	PWY-7606	docosahexaenoate biosynthesis III (mammals)
ATY42_12185	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
ATY42_12185	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
ATY42_12185	PWY-7726	ATY42_12185
ATY42_12185	PWY-7778	ATY42_12185
ATY42_12185	PWY-7779	ATY42_12185
ATY42_12260	PWY-7801	ATY42_12260
ATY42_12285	PWY-7887	ATY42_12285
ATY42_12285	PWY-7892	ATY42_12285
ATY42_12460	PWY-4381	fatty acid biosynthesis initiation I
ATY42_12520	PWY-7980	ATY42_12520
ATY42_12775	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
ATY42_12795	PWY-3341	L-proline biosynthesis III
ATY42_12795	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_12800	PWY-3341	L-proline biosynthesis III
ATY42_12800	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_12815	PWY-4983	L-citrulline-nitric oxide cycle
ATY42_12815	PWY-4984	urea cycle
ATY42_12815	PWY-5	canavanine biosynthesis
ATY42_12815	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_12815	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_12820	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_12820	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_12830	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_12830	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_12845	PWY-4983	L-citrulline-nitric oxide cycle
ATY42_12845	PWY-4984	urea cycle
ATY42_12845	PWY-5	canavanine biosynthesis
ATY42_12845	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_12845	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_12850	PWY-5686	UMP biosynthesis
ATY42_12850	PWY-7790	ATY42_12850
ATY42_12850	PWY-7791	ATY42_12850
ATY42_12895	PWY-5686	UMP biosynthesis
ATY42_12895	PWY-7790	ATY42_12895
ATY42_12895	PWY-7791	ATY42_12895
ATY42_12945	PWY-1081	homogalacturonan degradation
ATY42_12945	PWY-7246	pectin degradation II
ATY42_12945	PWY-7248	pectin degradation III
ATY42_12975	PWY-181	photorespiration
ATY42_12980	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
ATY42_12980	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
ATY42_12980	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
ATY42_12980	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
ATY42_12980	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
ATY42_12980	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
ATY42_12980	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
ATY42_12980	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
ATY42_12980	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
ATY42_12980	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
ATY42_13020	PWY-2301	<i>myo</i>-inositol biosynthesis
ATY42_13020	PWY-4702	phytate degradation I
ATY42_13020	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
ATY42_13025	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_13055	PWY-6605	adenine and adenosine salvage II
ATY42_13055	PWY-6610	adenine and adenosine salvage IV
ATY42_13055	PWY-7805	ATY42_13055
ATY42_13055	PWY-7807	ATY42_13055
ATY42_13110	PWY-5676	acetyl-CoA fermentation to butanoate II
ATY42_13110	PWY-5741	ethylmalonyl-CoA pathway
ATY42_13110	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
ATY42_13110	PWY-7948	ATY42_13110
ATY42_13145	PWY-6938	NADH repair
ATY42_13150	PWY-6700	queuosine biosynthesis
ATY42_13280	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_13280	PWY-6692	Fe(II) oxidation
ATY42_13280	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
ATY42_13280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_13390	PWY-381	nitrate reduction II (assimilatory)
ATY42_13390	PWY-5675	nitrate reduction V (assimilatory)
ATY42_13390	PWY-6549	L-glutamine biosynthesis III
ATY42_13390	PWY-6963	ammonia assimilation cycle I
ATY42_13390	PWY-6964	ammonia assimilation cycle II
ATY42_13400	PWY-381	nitrate reduction II (assimilatory)
ATY42_13400	PWY-5675	nitrate reduction V (assimilatory)
ATY42_13400	PWY-6549	L-glutamine biosynthesis III
ATY42_13400	PWY-6963	ammonia assimilation cycle I
ATY42_13400	PWY-6964	ammonia assimilation cycle II
ATY42_13480	PWY-5022	4-aminobutanoate degradation V
ATY42_13480	PWY-6728	methylaspartate cycle
ATY42_13480	PWY-7126	ethylene biosynthesis IV
ATY42_13710	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_13875	PWY-5747	2-methylcitrate cycle II
ATY42_13960	PWY-7805	ATY42_13960
ATY42_13960	PWY-7807	ATY42_13960
ATY42_13975	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_13975	PWY-5686	UMP biosynthesis
ATY42_13975	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_13975	PWY-7790	ATY42_13975
ATY42_13975	PWY-7791	ATY42_13975
ATY42_13985	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_13985	PWY-5686	UMP biosynthesis
ATY42_13985	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_13985	PWY-7790	ATY42_13985
ATY42_13985	PWY-7791	ATY42_13985
ATY42_13990	PWY-2941	L-lysine biosynthesis II
ATY42_13990	PWY-2942	L-lysine biosynthesis III
ATY42_13990	PWY-5097	L-lysine biosynthesis VI
ATY42_14095	PWY-4261	glycerol degradation I
ATY42_14105	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_14125	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_14125	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
ATY42_14125	PWY-7242	D-fructuronate degradation
ATY42_14125	PWY-7310	D-glucosaminate degradation
ATY42_14125	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
ATY42_14140	PWY-7130	L-glucose degradation
ATY42_14155	PWY-2941	L-lysine biosynthesis II
ATY42_14155	PWY-2942	L-lysine biosynthesis III
ATY42_14155	PWY-5097	L-lysine biosynthesis VI
ATY42_14185	PWY-6910	hydroxymethylpyrimidine salvage
ATY42_14185	PWY-7356	thiamin salvage IV (yeast)
ATY42_14185	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_14240	PWY-2681	<i>trans</i>-zeatin biosynthesis
ATY42_14310	PWY-2781	<i>cis</i>-zeatin biosynthesis
ATY42_14315	PWY-6614	tetrahydrofolate biosynthesis
ATY42_14355	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_14355	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_14355	PWY-6596	adenosine nucleotides degradation I
ATY42_14355	PWY-6606	guanosine nucleotides degradation II
ATY42_14355	PWY-6607	guanosine nucleotides degradation I
ATY42_14355	PWY-6608	guanosine nucleotides degradation III
ATY42_14355	PWY-7185	UTP and CTP dephosphorylation I
ATY42_14355	PWY-7821	ATY42_14355
ATY42_14370	PWY-7560	methylerythritol phosphate pathway II
ATY42_14375	PWY-7560	methylerythritol phosphate pathway II
ATY42_14385	PWY-1042	glycolysis IV (plant cytosol)
ATY42_14385	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_14385	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_14385	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_14385	PWY-5723	Rubisco shunt
ATY42_14385	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_14385	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_14385	PWY-6901	superpathway of glucose and xylose degradation
ATY42_14385	PWY-7003	glycerol degradation to butanol
ATY42_14385	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_14385	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_14395	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_14395	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_14400	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
ATY42_14400	PWY-7177	UTP and CTP dephosphorylation II
ATY42_14400	PWY-7185	UTP and CTP dephosphorylation I
ATY42_14540	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_14540	PWY-6578	8-amino-7-oxononanoate biosynthesis III
ATY42_14540	PWY-7147	8-amino-7-oxononanoate biosynthesis II
ATY42_14555	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
ATY42_14555	PWY-7688	ATY42_14555
ATY42_14965	PWY-7158	L-phenylalanine degradation V
ATY42_15055	PWY-6012	acyl carrier protein metabolism I
ATY42_15055	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY42_15055	PWY-6289	petrobactin biosynthesis
ATY42_15125	PWY-5194	siroheme biosynthesis
ATY42_15125	PWY-5196	factor 430 biosynthesis
ATY42_15125	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY42_15155	PWY-6823	molybdenum cofactor biosynthesis
ATY42_15520	PWY-6655	xanthan biosynthesis
ATY42_15520	PWY-6658	acetan biosynthesis
ATY42_15650	PWY-6617	adenosine nucleotides degradation III
ATY42_15650	PWY-7569	arginomycin biosynthesis
ATY42_15650	PWY-7570	blasticidin S biosynthesis
ATY42_15675	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_15685	PWY-6123	inosine-5'-phosphate biosynthesis I
ATY42_15685	PWY-7234	inosine-5'-phosphate biosynthesis III
ATY42_15695	PWY-5316	nicotine biosynthesis
ATY42_15695	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_15695	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_15695	PWY-7342	superpathway of nicotine biosynthesis
ATY42_15825	PWY-1042	glycolysis IV (plant cytosol)
ATY42_15825	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_15825	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_15825	PWY-7003	glycerol degradation to butanol
ATY42_15870	PWY-6749	CMP-legionaminate biosynthesis I
ATY42_15875	PWY-4381	fatty acid biosynthesis initiation I
ATY42_15875	PWY-5743	3-hydroxypropanoate cycle
ATY42_15875	PWY-5744	glyoxylate assimilation
ATY42_15875	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_15875	PWY-6722	candicidin biosynthesis
ATY42_15920	PWY-2941	L-lysine biosynthesis II
ATY42_15920	PWY-2942	L-lysine biosynthesis III
ATY42_15920	PWY-5097	L-lysine biosynthesis VI
ATY42_15920	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
ATY42_15920	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
ATY42_15920	PWY-6559	spermidine biosynthesis II
ATY42_15920	PWY-6562	norspermidine biosynthesis
ATY42_15920	PWY-7153	grixazone biosynthesis
ATY42_15920	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
ATY42_15920	PWY-7977	ATY42_15920
ATY42_15930	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
ATY42_15945	PWY-5669	phosphatidylethanolamine biosynthesis I
ATY42_16080	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
ATY42_16080	PWY-5491	diethylphosphate degradation
ATY42_16185	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_16185	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
ATY42_16185	PWY-7761	ATY42_16185
ATY42_16405	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_16405	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_16525	PWY-5278	sulfite oxidation III
ATY42_16525	PWY-5340	sulfate activation for sulfonation
ATY42_16525	PWY-6683	sulfate reduction III (assimilatory)
ATY42_16525	PWY-6932	selenate reduction
ATY42_16530	PWY-5278	sulfite oxidation III
ATY42_16530	PWY-5340	sulfate activation for sulfonation
ATY42_16530	PWY-6683	sulfate reduction III (assimilatory)
ATY42_16530	PWY-6932	selenate reduction
ATY42_16535	PWY-6683	sulfate reduction III (assimilatory)
ATY42_16540	PWY-6683	sulfate reduction III (assimilatory)
ATY42_16580	PWY-5194	siroheme biosynthesis
ATY42_16580	PWY-5196	factor 430 biosynthesis
ATY42_16580	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
ATY42_16585	PWY-6936	seleno-amino acid biosynthesis
ATY42_16595	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_16605	PWY-1042	glycolysis IV (plant cytosol)
ATY42_16605	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_16605	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_16605	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_16605	PWY-7385	1,3-propanediol biosynthesis (engineered)
ATY42_16610	PWY-1042	glycolysis IV (plant cytosol)
ATY42_16610	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
ATY42_16610	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_16610	PWY-5723	Rubisco shunt
ATY42_16610	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_16610	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_16610	PWY-6901	superpathway of glucose and xylose degradation
ATY42_16610	PWY-7003	glycerol degradation to butanol
ATY42_16610	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
ATY42_16610	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
ATY42_16620	PWY-1042	glycolysis IV (plant cytosol)
ATY42_16620	PWY-5484	glycolysis II (from fructose 6-phosphate)
ATY42_16620	PWY-6886	1-butanol autotrophic biosynthesis
ATY42_16620	PWY-6901	superpathway of glucose and xylose degradation
ATY42_16620	PWY-7003	glycerol degradation to butanol
ATY42_17635	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
ATY42_17655	PWY-7560	methylerythritol phosphate pathway II
ATY42_17670	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_17680	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
ATY42_17715	PWY-7731	ATY42_17715
ATY42_17745	PWY-5057	L-valine degradation II
ATY42_17745	PWY-5076	L-leucine degradation III
ATY42_17745	PWY-5078	L-isoleucine degradation II
ATY42_17745	PWY-5101	L-isoleucine biosynthesis II
ATY42_17745	PWY-5103	L-isoleucine biosynthesis III
ATY42_17745	PWY-5104	L-isoleucine biosynthesis IV
ATY42_17745	PWY-5108	L-isoleucine biosynthesis V
ATY42_17745	PWY-7767	ATY42_17745
ATY42_17885	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_17885	PWY-5723	Rubisco shunt
ATY42_17910	PWY-2582	brassinosteroid biosynthesis II
ATY42_17910	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
ATY42_17910	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
ATY42_17910	PWY-6948	sitosterol degradation to androstenedione
ATY42_17910	PWY-699	brassinosteroid biosynthesis I
ATY42_17910	PWY-7299	progesterone biosynthesis
ATY42_17995	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
ATY42_17995	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
ATY42_17995	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
ATY42_17995	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
ATY42_18010	PWY-2161	folate polyglutamylation
ATY42_18025	PWY-7782	ATY42_18025
ATY42_18025	PWY-7783	ATY42_18025
ATY42_18035	PWY-7378	aminopropanol phosphate biosynthesis II
ATY42_18220	PWY-5530	sorbitol biosynthesis II
ATY42_18355	PWY-3841	folate transformations II
ATY42_18355	PWY-6614	tetrahydrofolate biosynthesis
ATY42_18365	PWY-3841	folate transformations II
ATY42_18365	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
ATY42_18365	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
ATY42_18365	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
ATY42_18365	PWY-7199	pyrimidine deoxyribonucleosides salvage
ATY42_18365	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
ATY42_18390	PWY-7039	phosphatidate metabolism, as a signaling molecule
ATY42_18390	PWY-7817	ATY42_18390
ATY42_18505	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_18505	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
ATY42_18545	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_18545	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
ATY42_18545	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_18545	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
ATY42_18545	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
ATY42_18545	PWY-6549	L-glutamine biosynthesis III
ATY42_18545	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
ATY42_18545	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
ATY42_18545	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_18555	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_18620	PWY-2201	folate transformations I
ATY42_18620	PWY-3841	folate transformations II
ATY42_18635	PWY-6502	oxidized GTP and dGTP detoxification
ATY42_18635	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_18635	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_18635	PWY-6897	thiamin salvage II
ATY42_18635	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
ATY42_18635	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
ATY42_18635	PWY-7356	thiamin salvage IV (yeast)
ATY42_18635	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
ATY42_18680	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_18680	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_18680	PWY-7953	ATY42_18680
ATY42_18685	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_18685	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_18685	PWY-7953	ATY42_18685
ATY42_18690	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_18690	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_18690	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_18690	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_18695	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_18695	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_18695	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_18695	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_18700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_18700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_18700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_18705	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
ATY42_18705	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
ATY42_18705	PWY-7953	ATY42_18705
ATY42_18715	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_18715	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_18815	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
ATY42_18815	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
ATY42_18815	PWY-6896	thiamin salvage I
ATY42_18815	PWY-6897	thiamin salvage II
ATY42_18825	PWY-6167	flavin biosynthesis II (archaea)
ATY42_18825	PWY-6168	flavin biosynthesis III (fungi)
ATY42_18830	PWY-6167	flavin biosynthesis II (archaea)
ATY42_18830	PWY-6168	flavin biosynthesis III (fungi)
ATY42_18830	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_18830	PWY-7991	ATY42_18830
ATY42_18835	PWY-6167	flavin biosynthesis II (archaea)
ATY42_18835	PWY-6168	flavin biosynthesis III (fungi)
ATY42_18835	PWY-7980	ATY42_18835
ATY42_18845	PWY-7991	ATY42_18845
ATY42_18865	PWY-1622	formaldehyde assimilation I (serine pathway)
ATY42_18865	PWY-181	photorespiration
ATY42_18865	PWY-2161	folate polyglutamylation
ATY42_18865	PWY-2201	folate transformations I
ATY42_18865	PWY-3661	glycine betaine degradation I
ATY42_18865	PWY-3661-1	glycine betaine degradation II (mammalian)
ATY42_18865	PWY-3841	folate transformations II
ATY42_18865	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_18905	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_18915	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_18915	PWY-3162	L-tryptophan degradation V (side chain pathway)
ATY42_18915	PWY-5057	L-valine degradation II
ATY42_18915	PWY-5076	L-leucine degradation III
ATY42_18915	PWY-5078	L-isoleucine degradation II
ATY42_18915	PWY-5079	L-phenylalanine degradation III
ATY42_18915	PWY-5082	L-methionine degradation III
ATY42_18915	PWY-5480	pyruvate fermentation to ethanol I
ATY42_18915	PWY-5486	pyruvate fermentation to ethanol II
ATY42_18915	PWY-5751	phenylethanol biosynthesis
ATY42_18915	PWY-6313	serotonin degradation
ATY42_18915	PWY-6333	acetaldehyde biosynthesis I
ATY42_18915	PWY-6342	noradrenaline and adrenaline degradation
ATY42_18915	PWY-6587	pyruvate fermentation to ethanol III
ATY42_18915	PWY-6802	salidroside biosynthesis
ATY42_18915	PWY-6871	3-methylbutanol biosynthesis
ATY42_18915	PWY-7013	L-1,2-propanediol degradation
ATY42_18915	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_18915	PWY-7118	chitin degradation to ethanol
ATY42_18915	PWY-7396	butanol and isobutanol biosynthesis (engineered)
ATY42_18915	PWY-7798	ATY42_18915
ATY42_18970	PWY-6840	homoglutathione biosynthesis
ATY42_18970	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY42_19140	PWY-6906	chitin derivatives degradation
ATY42_19140	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
ATY42_19140	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
ATY42_19175	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_19210	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_19210	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_19210	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_19210	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_19210	PWY-7852	ATY42_19210
ATY42_19210	PWY-7853	ATY42_19210
ATY42_19275	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_19295	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY42_19295	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY42_19300	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
ATY42_19300	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
ATY42_19315	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_19315	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_19365	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_19365	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
ATY42_19365	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
ATY42_19365	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_19370	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
ATY42_19370	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
ATY42_19435	PWY-5839	menaquinol-7 biosynthesis
ATY42_19435	PWY-5844	menaquinol-9 biosynthesis
ATY42_19435	PWY-5849	menaquinol-6 biosynthesis
ATY42_19435	PWY-5890	menaquinol-10 biosynthesis
ATY42_19435	PWY-5891	menaquinol-11 biosynthesis
ATY42_19435	PWY-5892	menaquinol-12 biosynthesis
ATY42_19435	PWY-5895	menaquinol-13 biosynthesis
ATY42_19480	PWY-2941	L-lysine biosynthesis II
ATY42_19480	PWY-5097	L-lysine biosynthesis VI
ATY42_19535	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_19535	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_19690	PWY-7892	ATY42_19690
ATY42_19770	PWY-5958	acridone alkaloid biosynthesis
ATY42_19770	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_19770	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_19785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
ATY42_19785	PWY-5723	Rubisco shunt
ATY42_19960	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
ATY42_19960	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
ATY42_20020	PWY-6454	vancomycin resistance I
ATY42_20020	PWY-6455	vancomycin resistance II
ATY42_20145	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_20145	PWY-6148	tetrahydromethanopterin biosynthesis
ATY42_20145	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
ATY42_20145	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
ATY42_20235	PWY-3781	aerobic respiration I (cytochrome c)
ATY42_20235	PWY-4521	arsenite oxidation I (respiratory)
ATY42_20235	PWY-6692	Fe(II) oxidation
ATY42_20235	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
ATY42_20250	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
ATY42_20250	PWY-6853	ethylene biosynthesis II (microbes)
ATY42_20250	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
ATY42_20315	PWY-6834	spermidine biosynthesis III
ATY42_20350	PWY-5958	acridone alkaloid biosynthesis
ATY42_20350	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
ATY42_20350	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
ATY42_20375	PWY-5913	TCA cycle VI (obligate autotrophs)
ATY42_20375	PWY-6549	L-glutamine biosynthesis III
ATY42_20375	PWY-6728	methylaspartate cycle
ATY42_20375	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
ATY42_20375	PWY-7124	ethylene biosynthesis V (engineered)
ATY42_20375	PWY-7254	TCA cycle VII (acetate-producers)
ATY42_20375	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
ATY42_20445	PWY-6700	queuosine biosynthesis
ATY42_20515	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_20515	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_20515	PWY-7902	ATY42_20515
ATY42_20570	PWY-4381	fatty acid biosynthesis initiation I
ATY42_20640	PWY-5101	L-isoleucine biosynthesis II
ATY42_20640	PWY-5103	L-isoleucine biosynthesis III
ATY42_20640	PWY-5104	L-isoleucine biosynthesis IV
ATY42_20640	PWY-7111	pyruvate fermentation to isobutanol (engineered)
ATY42_20685	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
ATY42_20715	PWY-6891	thiazole biosynthesis II (Bacillus)
ATY42_20715	PWY-6892	thiazole biosynthesis I (E. coli)
ATY42_20715	PWY-7560	methylerythritol phosphate pathway II
ATY42_20885	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
ATY42_20885	PWY-6164	3-dehydroquinate biosynthesis I
ATY42_20885	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
ATY42_20980	PWY-7980	ATY42_20980
ATY42_21035	PWY-5971	palmitate biosynthesis II (bacteria and plants)
ATY42_21035	PWY-5973	<i>cis</i>-vaccenate biosynthesis
ATY42_21035	PWY-5989	stearate biosynthesis II (bacteria and plants)
ATY42_21035	PWY-5994	palmitate biosynthesis I (animals and fungi)
ATY42_21035	PWY-6113	superpathway of mycolate biosynthesis
ATY42_21035	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
ATY42_21035	PWY-6519	8-amino-7-oxononanoate biosynthesis I
ATY42_21035	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
ATY42_21035	PWY-7663	gondoate biosynthesis (anaerobic)
ATY42_21035	PWY-7664	oleate biosynthesis IV (anaerobic)
ATY42_21035	PWY-7858	ATY42_21035
ATY42_21035	PWYG-321	mycolate biosynthesis
ATY42_21040	PWY-5667	CDP-diacylglycerol biosynthesis I
ATY42_21040	PWY-5981	CDP-diacylglycerol biosynthesis III
ATY42_21040	PWY-6453	stigma estolide biosynthesis
ATY42_21040	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
ATY42_21040	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
ATY42_21040	PWY-7587	oleate biosynthesis III (cyanobacteria)
ATY42_21040	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
ATY42_21040	PWY-7782	ATY42_21040
ATY42_21065	PWY-5381	pyridine nucleotide cycling (plants)
ATY42_21065	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
ATY42_21065	PWY-6596	adenosine nucleotides degradation I
ATY42_21065	PWY-6606	guanosine nucleotides degradation II
ATY42_21065	PWY-6607	guanosine nucleotides degradation I
ATY42_21065	PWY-6608	guanosine nucleotides degradation III
ATY42_21065	PWY-7185	UTP and CTP dephosphorylation I
ATY42_21065	PWY-7821	ATY42_21065
ATY42_21100	PWY-6825	phosphatidylcholine biosynthesis V
ATY42_21125	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
ATY42_21125	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
ATY42_21125	PWY-6936	seleno-amino acid biosynthesis
ATY42_21125	PWY-702	L-methionine biosynthesis II
ATY42_21145	PWY-6700	queuosine biosynthesis
ATY42_21150	PWY-2201	folate transformations I
ATY42_21150	PWY-3841	folate transformations II
ATY42_21170	PWY-2201	folate transformations I
ATY42_21170	PWY-5497	purine nucleobases degradation II (anaerobic)
ATY42_21170	PWY-7909	ATY42_21170
ATY42_21265	PWY-6832	2-aminoethylphosphonate degradation II
ATY42_21280	PWY-5691	urate degradation to allantoin I
ATY42_21280	PWY-7394	urate degradation to allantoin II
ATY42_21280	PWY-7849	ATY42_21280
ATY42_21335	PWY-4381	fatty acid biosynthesis initiation I
ATY42_21335	PWY-5743	3-hydroxypropanoate cycle
ATY42_21335	PWY-5744	glyoxylate assimilation
ATY42_21335	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
ATY42_21335	PWY-6722	candicidin biosynthesis
ATY42_21545	PWY-6807	xyloglucan degradation II (exoglucanase)
ATY42_21565	PWY-6531	mannitol cycle
ATY42_21585	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
ATY42_21585	PWY-7248	pectin degradation III
ATY42_21590	PWY-6717	(1,4)-&beta;-xylan degradation
ATY42_21590	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_21595	PWY-6717	(1,4)-&beta;-xylan degradation
ATY42_21595	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
ATY42_21845	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_21850	PWY-6854	ethylene biosynthesis III (microbes)
ATY42_21875	PWY-381	nitrate reduction II (assimilatory)
ATY42_21875	PWY-5675	nitrate reduction V (assimilatory)
ATY42_21875	PWY-6549	L-glutamine biosynthesis III
ATY42_21875	PWY-6963	ammonia assimilation cycle I
ATY42_21875	PWY-6964	ammonia assimilation cycle II
ATY42_21880	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
ATY42_21970	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY42_21970	PWY-7550	ergothioneine biosynthesis II (fungi)
ATY42_21975	PWY-7255	ergothioneine biosynthesis I (bacteria)
ATY42_22155	PWY-5108	L-isoleucine biosynthesis V
ATY42_22155	PWY-5132	humulone biosynthesis
ATY42_22155	PWY-5133	cohumulone biosynthesis
ATY42_22155	PWY-6672	<i>cis</i>-genanyl-CoA degradation
ATY42_22155	PWY-7118	chitin degradation to ethanol
ATY42_22155	PWY-7857	ATY42_22155
ATY42_22190	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
ATY42_22200	PWY-6012	acyl carrier protein metabolism I
ATY42_22200	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
ATY42_22200	PWY-6289	petrobactin biosynthesis
ATY42_22260	PWY-7701	ATY42_22260
ATY42_22440	PWY-5663	tetrahydrobiopterin biosynthesis I
ATY42_22440	PWY-5664	tetrahydrobiopterin biosynthesis II
ATY42_22440	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
ATY42_22440	PWY-6703	preQ<sub>0</sub> biosynthesis
ATY42_22440	PWY-6983	tetrahydrobiopterin biosynthesis III
ATY42_22440	PWY-7442	drosopterin and aurodrosopterin biosynthesis
ATY42_22440	PWY-7852	ATY42_22440
ATY42_22585	PWY-6348	phosphate acquisition
