locus-tag class description LA08_00005 PF08299 Bacterial dnaA protein helix-turn-helix LA08_00005 PF00308 Bacterial dnaA protein LA08_00005 PF11638 DnaA N-terminal domain LA08_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LA08_00010 PF02767 DNA polymerase III beta subunit, central domain LA08_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LA08_00020 PF02463 RecF/RecN/SMC N terminal domain LA08_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_00025 PF00204 DNA gyrase B LA08_00025 PF00986 DNA gyrase B subunit, carboxyl terminus LA08_00025 PF18053 DNA gyrase B subunit insert domain LA08_00025 PF01751 Toprim domain LA08_00035 PF01435 Peptidase family M48 LA08_00045 PF03544 Gram-negative bacterial TonB protein C-terminal LA08_00050 PF01618 MotA/TolQ/ExbB proton channel family LA08_00055 PF02472 Biopolymer transport protein ExbD/TolR LA08_00060 PF02472 Biopolymer transport protein ExbD/TolR LA08_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LA08_00075 PF13091 PLD-like domain LA08_00075 PF13396 Phospholipase_D-nuclease N-terminal LA08_00085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LA08_00090 PF00155 Aminotransferase class I and II LA08_00095 PF00593 TonB dependent receptor LA08_00095 PF07715 TonB-dependent Receptor Plug Domain LA08_00110 PF05598 Transposase domain (DUF772) LA08_00110 PF01609 Transposase DDE domain LA08_00115 PF01070 FMN-dependent dehydrogenase LA08_00120 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LA08_00135 PF12241 Trans-2-enoyl-CoA reductase catalytic region LA08_00135 PF07055 Enoyl reductase FAD binding domain LA08_00135 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LA08_00145 PF00294 pfkB family carbohydrate kinase LA08_00155 PF05598 Transposase domain (DUF772) LA08_00155 PF01609 Transposase DDE domain LA08_00160 PF00005 ABC transporter LA08_00170 PF05598 Transposase domain (DUF772) LA08_00210 PF01609 Transposase DDE domain LA08_00210 PF05598 Transposase domain (DUF772) LA08_00220 PF00270 DEAD/DEAH box helicase LA08_00220 PF00271 Helicase conserved C-terminal domain LA08_00235 PF06903 VirK protein LA08_00325 PF03150 Di-haem cytochrome c peroxidase LA08_00335 PF13460 NAD(P)H-binding LA08_00340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA08_00340 PF00128 Alpha amylase, catalytic domain LA08_00350 PF00128 Alpha amylase, catalytic domain LA08_00355 PF02446 4-alpha-glucanotransferase LA08_00360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA08_00360 PF11941 Domain of unknown function (DUF3459) LA08_00360 PF00128 Alpha amylase, catalytic domain LA08_00365 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA08_00365 PF02806 Alpha amylase, C-terminal all-beta domain LA08_00365 PF00128 Alpha amylase, catalytic domain LA08_00375 PF00990 Diguanylate cyclase, GGDEF domain LA08_00375 PF00072 Response regulator receiver domain LA08_00385 PF05661 Protein of unknown function (DUF808) LA08_00395 PF03109 ABC1 family LA08_00410 PF12795 Mechanosensitive ion channel porin domain LA08_00410 PF00924 Mechanosensitive ion channel LA08_00410 PF12794 Mechanosensitive ion channel inner membrane domain 1 LA08_00435 PF01464 Transglycosylase SLT domain LA08_00450 PF01311 Bacterial export proteins, family 1 LA08_00460 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA08_00460 PF18269 T3SS EscN ATPase C-terminal domain LA08_00460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA08_00475 PF01514 Secretory protein of YscJ/FliF family LA08_00490 PF01312 FlhB HrpN YscU SpaS Family LA08_00495 PF00771 FHIPEP family LA08_00510 PF00813 FliP family LA08_00515 PF01313 Bacterial export proteins, family 3 LA08_00570 PF01609 Transposase DDE domain LA08_00570 PF05598 Transposase domain (DUF772) LA08_00580 PF05598 Transposase domain (DUF772) LA08_00580 PF01609 Transposase DDE domain LA08_00585 PF05819 NolX protein LA08_00615 PF00595 PDZ domain LA08_00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_00625 PF00512 His Kinase A (phospho-acceptor) domain LA08_00625 PF08521 Two-component sensor kinase N-terminal LA08_00635 PF08338 Domain of unknown function (DUF1731) LA08_00635 PF01370 NAD dependent epimerase/dehydratase family LA08_00645 PF05598 Transposase domain (DUF772) LA08_00645 PF01609 Transposase DDE domain LA08_00670 PF13936 Helix-turn-helix domain LA08_00670 PF00665 Integrase core domain LA08_00690 PF00293 NUDIX domain LA08_00690 PF13344 Haloacid dehalogenase-like hydrolase LA08_00720 PF13533 Biotin-lipoyl like LA08_00730 PF00005 ABC transporter LA08_00755 PF08845 Toxin SymE, type I toxin-antitoxin system LA08_00775 PF03006 Haemolysin-III related LA08_00780 PF00270 DEAD/DEAH box helicase LA08_00780 PF09369 Domain of unknown function (DUF1998) LA08_00780 PF00271 Helicase conserved C-terminal domain LA08_00845 PF00310 Glutamine amidotransferases class-II LA08_00845 PF01645 Conserved region in glutamate synthase LA08_00845 PF04898 Glutamate synthase central domain LA08_00845 PF01493 GXGXG motif LA08_00850 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_00850 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LA08_00890 PF05598 Transposase domain (DUF772) LA08_00900 PF00356 Bacterial regulatory proteins, lacI family LA08_00930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA08_00930 PF02806 Alpha amylase, C-terminal all-beta domain LA08_00930 PF00128 Alpha amylase, catalytic domain LA08_00935 PF16657 Maltogenic Amylase, C-terminal domain LA08_00935 PF00128 Alpha amylase, catalytic domain LA08_00940 PF11896 Domain of unknown function (DUF3416) LA08_00940 PF00128 Alpha amylase, catalytic domain LA08_00995 PF13335 Magnesium chelatase, subunit ChlI C-terminal LA08_00995 PF01078 Magnesium chelatase, subunit ChlI LA08_01000 PF04380 Membrane fusogenic activity LA08_01005 PF00543 Nitrogen regulatory protein P-II LA08_01040 PF17284 Spermidine synthase tetramerisation domain LA08_01045 PF17810 Arginine decarboxylase helical bundle domain LA08_01045 PF17944 Arginine decarboxylase C-terminal helical extension LA08_01045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA08_01050 PF05598 Transposase domain (DUF772) LA08_01055 PF04717 Type VI secretion system, phage-baseplate injector LA08_01055 PF16671 Actin cross-linking domain LA08_01095 PF01134 Glucose inhibited division protein A LA08_01095 PF13932 GidA associated domain LA08_01110 PF00291 Pyridoxal-phosphate dependent enzyme LA08_01130 PF13649 Methyltransferase domain LA08_01140 PF12697 Alpha/beta hydrolase family LA08_01160 PF04349 Periplasmic glucan biosynthesis protein, MdoG LA08_01170 PF00265 Thymidine kinase LA08_01175 PF13361 UvrD-like helicase C-terminal domain LA08_01175 PF00580 UvrD/REP helicase N-terminal domain LA08_01190 PF04337 Protein of unknown function, DUF480 LA08_01195 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LA08_01200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LA08_01205 PF04820 Tryptophan halogenase LA08_01220 PF00356 Bacterial regulatory proteins, lacI family LA08_01235 PF01553 Acyltransferase LA08_01265 PF00657 GDSL-like Lipase/Acylhydrolase LA08_01280 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LA08_01285 PF01037 Lrp/AsnC ligand binding domain LA08_01335 PF00107 Zinc-binding dehydrogenase LA08_01335 PF08240 Alcohol dehydrogenase GroES-like domain LA08_01345 PF00150 Cellulase (glycosyl hydrolase family 5) LA08_01355 PF00150 Cellulase (glycosyl hydrolase family 5) LA08_01365 PF00150 Cellulase (glycosyl hydrolase family 5) LA08_01375 PF02810 SEC-C motif LA08_01390 PF05598 Transposase domain (DUF772) LA08_01390 PF01609 Transposase DDE domain LA08_01395 PF01263 Aldose 1-epimerase LA08_01400 PF07690 Major Facilitator Superfamily LA08_01405 PF01126 Heme oxygenase LA08_01410 PF00360 Phytochrome region LA08_01410 PF08446 PAS fold LA08_01410 PF01590 GAF domain LA08_01410 PF13426 PAS domain LA08_01460 PF06827 Zinc finger found in FPG and IleRS LA08_01460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LA08_01460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LA08_01485 PF04333 MlaA lipoprotein LA08_01495 PF05494 MlaC protein LA08_01500 PF02470 MlaD protein LA08_01505 PF02405 Permease MlaE LA08_01510 PF00005 ABC transporter LA08_01585 PF13570 PQQ-like domain LA08_01585 PF13360 PQQ-like domain LA08_01585 PF01011 PQQ enzyme repeat LA08_01610 PF06165 Glycosyltransferase family 36 LA08_01610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LA08_01625 PF00512 His Kinase A (phospho-acceptor) domain LA08_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_01630 PF02659 Putative manganese efflux pump LA08_01635 PF01614 Bacterial transcriptional regulator LA08_01635 PF09339 IclR helix-turn-helix domain LA08_01640 PF07690 Major Facilitator Superfamily LA08_01645 PF05336 L-rhamnose mutarotase LA08_01675 PF01432 Peptidase family M3 LA08_01695 PF00472 RF-1 domain LA08_01705 PF00849 RNA pseudouridylate synthase LA08_01715 PF03109 ABC1 family LA08_01815 PF08546 Ketopantoate reductase PanE/ApbA C terminal LA08_01815 PF02558 Ketopantoate reductase PanE/ApbA LA08_01825 PF01061 ABC-2 type transporter LA08_01830 PF00005 ABC transporter LA08_01835 PF01383 CpcD/allophycocyanin linker domain LA08_01835 PF00175 Oxidoreductase NAD-binding domain LA08_01840 PF01545 Cation efflux family LA08_01845 PF02583 Metal-sensitive transcriptional repressor LA08_01855 PF01381 Helix-turn-helix LA08_01865 PF00005 ABC transporter LA08_01880 PF04820 Tryptophan halogenase LA08_01905 PF00043 Glutathione S-transferase, C-terminal domain LA08_01905 PF02798 Glutathione S-transferase, N-terminal domain LA08_01915 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LA08_01915 PF00326 Prolyl oligopeptidase family LA08_01940 PF00490 Delta-aminolevulinic acid dehydratase LA08_01955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_01955 PF03466 LysR substrate binding domain LA08_01965 PF00667 FAD binding domain LA08_01965 PF00258 Flavodoxin LA08_01965 PF00175 Oxidoreductase NAD-binding domain LA08_01980 PF08501 Shikimate dehydrogenase substrate binding domain LA08_01980 PF01488 Shikimate / quinate 5-dehydrogenase LA08_01980 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LA08_01990 PF06733 DEAD_2 LA08_01990 PF13307 Helicase C-terminal domain LA08_02010 PF13533 Biotin-lipoyl like LA08_02015 PF00199 Catalase LA08_02015 PF06628 Catalase-related immune-responsive LA08_02040 PF01207 Dihydrouridine synthase (Dus) LA08_02050 PF00072 Response regulator receiver domain LA08_02050 PF00486 Transcriptional regulatory protein, C terminal LA08_02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_02055 PF00512 His Kinase A (phospho-acceptor) domain LA08_02055 PF00672 HAMP domain LA08_02080 PF08279 HTH domain LA08_02080 PF03099 Biotin/lipoate A/B protein ligase family LA08_02080 PF02237 Biotin protein ligase C terminal domain LA08_02085 PF03309 Type III pantothenate kinase LA08_02100 PF02223 Thymidylate kinase LA08_02125 PF00491 Arginase family LA08_02140 PF05532 CsbD-like LA08_02145 PF00579 tRNA synthetases class I (W and Y) LA08_02150 PF00753 Metallo-beta-lactamase superfamily LA08_02180 PF00892 EamA-like transporter family LA08_02200 PF00199 Catalase LA08_02205 PF08281 Sigma-70, region 4 LA08_02205 PF04542 Sigma-70 region 2 LA08_02215 PF00883 Cytosol aminopeptidase family, catalytic domain LA08_02215 PF02789 Cytosol aminopeptidase family, N-terminal domain LA08_02225 PF01594 AI-2E family transporter LA08_02240 PF01040 UbiA prenyltransferase family LA08_02250 PF04055 Radical SAM superfamily LA08_02250 PF06968 Biotin and Thiamin Synthesis associated domain LA08_02255 PF00155 Aminotransferase class I and II LA08_02285 PF00535 Glycosyl transferase family 2 LA08_02295 PF00109 Beta-ketoacyl synthase, N-terminal domain LA08_02295 PF02801 Beta-ketoacyl synthase, C-terminal domain LA08_02300 PF05166 YcgL domain LA08_02315 PF00723 Glycosyl hydrolases family 15 LA08_02325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LA08_02325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LA08_02340 PF02254 TrkA-N domain LA08_02340 PF00999 Sodium/hydrogen exchanger family LA08_02345 PF01769 Divalent cation transporter LA08_02345 PF03448 MgtE intracellular N domain LA08_02345 PF00571 CBS domain LA08_02355 PF00583 Acetyltransferase (GNAT) family LA08_02355 PF13380 CoA binding domain LA08_02355 PF13607 Succinyl-CoA ligase like flavodoxin domain LA08_02365 PF00317 Ribonucleotide reductase, all-alpha domain LA08_02365 PF02867 Ribonucleotide reductase, barrel domain LA08_02365 PF03477 ATP cone domain LA08_02375 PF00268 Ribonucleotide reductase, small chain LA08_02405 PF02803 Thiolase, C-terminal domain LA08_02405 PF00108 Thiolase, N-terminal domain LA08_02410 PF00775 Dioxygenase LA08_02410 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LA08_02425 PF10397 Adenylosuccinate lyase C-terminus LA08_02425 PF00206 Lyase LA08_02430 PF12146 Serine aminopeptidase, S33 LA08_02435 PF02627 Carboxymuconolactone decarboxylase family LA08_02465 PF00106 short chain dehydrogenase LA08_02480 PF03485 Arginyl tRNA synthetase N terminal domain LA08_02480 PF05746 DALR anticodon binding domain LA08_02480 PF00750 tRNA synthetases class I (R) LA08_02485 PF04002 RadC-like JAB domain LA08_02490 PF02441 Flavoprotein LA08_02490 PF04127 DNA / pantothenate metabolism flavoprotein LA08_02495 PF00692 dUTPase LA08_02500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA08_02500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA08_02500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA08_02500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA08_02515 PF00535 Glycosyl transferase family 2 LA08_02520 PF01370 NAD dependent epimerase/dehydratase family LA08_02530 PF17762 HTH domain found in ParB protein LA08_02530 PF02195 ParB-like nuclease domain LA08_02535 PF13614 AAA domain LA08_02545 PF00156 Phosphoribosyl transferase domain LA08_02550 PF03372 Endonuclease/Exonuclease/phosphatase family LA08_02555 PF07690 Major Facilitator Superfamily LA08_02565 PF03702 Anhydro-N-acetylmuramic acid kinase LA08_02570 PF04225 Opacity-associated protein A LysM-like domain LA08_02570 PF01551 Peptidase family M23 LA08_02575 PF00579 tRNA synthetases class I (W and Y) LA08_02615 PF01627 Hpt domain LA08_02615 PF00072 Response regulator receiver domain LA08_02615 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA08_02615 PF00672 HAMP domain LA08_02615 PF00512 His Kinase A (phospho-acceptor) domain LA08_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_02620 PF00072 Response regulator receiver domain LA08_02620 PF00486 Transcriptional regulatory protein, C terminal LA08_02645 PF01521 Iron-sulphur cluster biosynthesis LA08_02655 PF09297 NADH pyrophosphatase zinc ribbon domain LA08_02655 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LA08_02655 PF00293 NUDIX domain LA08_02660 PF03186 CobD/Cbib protein LA08_02660 PF17113 Regulatory signalling modulator protein AmpE LA08_02685 PF07690 Major Facilitator Superfamily LA08_02700 PF12805 FUSC-like inner membrane protein yccS LA08_02710 PF12704 MacB-like periplasmic core domain LA08_02710 PF00005 ABC transporter LA08_02710 PF02687 FtsX-like permease family LA08_02715 PF02843 Phosphoribosylglycinamide synthetase, C domain LA08_02715 PF02844 Phosphoribosylglycinamide synthetase, N domain LA08_02715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LA08_02725 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system LA08_02730 PF02142 MGS-like domain LA08_02730 PF01808 AICARFT/IMPCHase bienzyme LA08_02740 PF12147 Putative methyltransferase LA08_02740 PF12146 Serine aminopeptidase, S33 LA08_02750 PF12146 Serine aminopeptidase, S33 LA08_02750 PF12147 Putative methyltransferase LA08_02755 PF00782 Dual specificity phosphatase, catalytic domain LA08_02770 PF02954 Bacterial regulatory protein, Fis family LA08_02785 PF01381 Helix-turn-helix LA08_02830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA08_02830 PF02785 Biotin carboxylase C-terminal domain LA08_02830 PF00289 Biotin carboxylase, N-terminal domain LA08_02840 PF00364 Biotin-requiring enzyme LA08_02845 PF01220 Dehydroquinase class II LA08_02860 PF11412 Disulphide bond corrector protein DsbC LA08_02860 PF02683 Cytochrome C biogenesis protein transmembrane region LA08_02865 PF03091 CutA1 divalent ion tolerance protein LA08_02900 PF00270 DEAD/DEAH box helicase LA08_02900 PF00271 Helicase conserved C-terminal domain LA08_02900 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LA08_02900 PF18074 Primosomal protein N C-terminal domain LA08_02900 PF17764 3′ DNA-binding domain (3′BD) LA08_02930 PF01554 MatE LA08_02935 PF01343 Peptidase family S49 LA08_02960 PF01300 Telomere recombination LA08_02965 PF01131 DNA topoisomerase LA08_02965 PF01751 Toprim domain LA08_02965 PF13368 Topoisomerase C-terminal repeat LA08_02975 PF00114 Pilin (bacterial filament) LA08_02975 PF07963 Prokaryotic N-terminal methylation motif LA08_02980 PF04361 Protein of unknown function (DUF494) LA08_02985 PF02481 DNA recombination-mediator protein A LA08_02985 PF17782 DprA winged helix domain LA08_02990 PF01476 LysM domain LA08_02995 PF01327 Polypeptide deformylase LA08_03000 PF02911 Formyl transferase, C-terminal domain LA08_03000 PF00551 Formyl transferase LA08_03005 PF01029 NusB family LA08_03005 PF01189 16S rRNA methyltransferase RsmB/F LA08_03020 PF00535 Glycosyl transferase family 2 LA08_03040 PF00925 GTP cyclohydrolase II LA08_03055 PF03279 Bacterial lipid A biosynthesis acyltransferase LA08_03060 PF02580 D-Tyr-tRNA(Tyr) deacylase LA08_03065 PF04545 Sigma-70, region 4 LA08_03065 PF04539 Sigma-70 region 3 LA08_03065 PF04542 Sigma-70 region 2 LA08_03065 PF03979 Sigma-70 factor, region 1.1 LA08_03065 PF04546 Sigma-70, non-essential region LA08_03065 PF00140 Sigma-70 factor, region 1.2 LA08_03150 PF00005 ABC transporter LA08_03165 PF07715 TonB-dependent Receptor Plug Domain LA08_03165 PF00593 TonB dependent receptor LA08_03220 PF02322 Cytochrome bd terminal oxidase subunit II LA08_03225 PF01654 Cytochrome bd terminal oxidase subunit I LA08_03240 PF00158 Sigma-54 interaction domain LA08_03240 PF02954 Bacterial regulatory protein, Fis family LA08_03240 PF00072 Response regulator receiver domain LA08_03270 PF00672 HAMP domain LA08_03270 PF02743 Cache domain LA08_03270 PF06580 Histidine kinase LA08_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_03285 PF13520 Amino acid permease LA08_03305 PF05649 Peptidase family M13 LA08_03305 PF01431 Peptidase family M13 LA08_03320 PF00248 Aldo/keto reductase family LA08_03325 PF03358 NADPH-dependent FMN reductase LA08_03335 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LA08_03345 PF03167 Uracil DNA glycosylase superfamily LA08_03355 PF02469 Fasciclin domain LA08_03370 PF00999 Sodium/hydrogen exchanger family LA08_03375 PF00005 ABC transporter LA08_03380 PF01061 ABC-2 type transporter LA08_03395 PF00082 Subtilase family LA08_03395 PF04151 Bacterial pre-peptidase C-terminal domain LA08_03405 PF00072 Response regulator receiver domain LA08_03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_03405 PF13188 PAS domain LA08_03405 PF00512 His Kinase A (phospho-acceptor) domain LA08_03405 PF08448 PAS fold LA08_03410 PF00486 Transcriptional regulatory protein, C terminal LA08_03410 PF00072 Response regulator receiver domain LA08_03430 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA08_03430 PF00691 OmpA family LA08_03435 PF01618 MotA/TolQ/ExbB proton channel family LA08_03445 PF01641 SelR domain LA08_03455 PF01037 Lrp/AsnC ligand binding domain LA08_03460 PF01266 FAD dependent oxidoreductase LA08_03465 PF00842 Alanine racemase, C-terminal domain LA08_03465 PF01168 Alanine racemase, N-terminal domain LA08_03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_03485 PF00512 His Kinase A (phospho-acceptor) domain LA08_03485 PF00989 PAS fold LA08_03500 PF07995 Glucose / Sorbosone dehydrogenase LA08_03520 PF08468 Methyltransferase small domain N-terminal LA08_03520 PF05175 Methyltransferase small domain LA08_03525 PF00849 RNA pseudouridylate synthase LA08_03525 PF01479 S4 domain LA08_03530 PF13419 Haloacid dehalogenase-like hydrolase LA08_03560 PF04461 Protein of unknown function (DUF520) LA08_03565 PF00892 EamA-like transporter family LA08_03570 PF00005 ABC transporter LA08_03570 PF09383 NIL domain LA08_03575 PF00528 Binding-protein-dependent transport system inner membrane component LA08_03580 PF03180 NLPA lipoprotein LA08_03605 PF02817 e3 binding domain LA08_03605 PF00364 Biotin-requiring enzyme LA08_03605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA08_03615 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_03615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA08_03635 PF00119 ATP synthase A chain LA08_03640 PF00137 ATP synthase subunit C LA08_03645 PF00430 ATP synthase B/B' CF(0) LA08_03650 PF00213 ATP synthase delta (OSCP) subunit LA08_03655 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA08_03655 PF00306 ATP synthase alpha/beta chain, C terminal domain LA08_03655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA08_03660 PF00231 ATP synthase LA08_03665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA08_03665 PF02874 ATP synthase alpha/beta family, beta-barrel domain LA08_03670 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LA08_03675 PF01817 Chorismate mutase type II LA08_03690 PF00132 Bacterial transferase hexapeptide (six repeats) LA08_03690 PF12804 MobA-like NTP transferase domain LA08_03690 PF14602 Hexapeptide repeat of succinyl-transferase LA08_03725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_03730 PF01380 SIS domain LA08_03760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA08_03765 PF05275 Copper resistance protein B precursor (CopB) LA08_03770 PF07732 Multicopper oxidase LA08_03770 PF07731 Multicopper oxidase LA08_03770 PF00394 Multicopper oxidase LA08_03785 PF01432 Peptidase family M3 LA08_03795 PF00109 Beta-ketoacyl synthase, N-terminal domain LA08_03795 PF02801 Beta-ketoacyl synthase, C-terminal domain LA08_03800 PF07977 FabA-like domain LA08_03810 PF11799 impB/mucB/samB family C-terminal domain LA08_03810 PF00817 impB/mucB/samB family LA08_03815 PF13419 Haloacid dehalogenase-like hydrolase LA08_03825 PF13185 GAF domain LA08_03840 PF01242 6-pyruvoyl tetrahydropterin synthase LA08_03850 PF00271 Helicase conserved C-terminal domain LA08_03850 PF00270 DEAD/DEAH box helicase LA08_03865 PF13417 Glutathione S-transferase, N-terminal domain LA08_03870 PF00437 Type II/IV secretion system protein LA08_03890 PF00291 Pyridoxal-phosphate dependent enzyme LA08_03890 PF00571 CBS domain LA08_03895 PF01053 Cys/Met metabolism PLP-dependent enzyme LA08_03905 PF01370 NAD dependent epimerase/dehydratase family LA08_03945 PF00872 Transposase, Mutator family LA08_03955 PF00005 ABC transporter LA08_03965 PF01012 Electron transfer flavoprotein domain LA08_03965 PF00766 Electron transfer flavoprotein FAD-binding domain LA08_03970 PF01012 Electron transfer flavoprotein domain LA08_03975 PF16363 GDP-mannose 4,6 dehydratase LA08_03980 PF00483 Nucleotidyl transferase LA08_03985 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LA08_03990 PF04321 RmlD substrate binding domain LA08_03995 PF00483 Nucleotidyl transferase LA08_03995 PF01050 Mannose-6-phosphate isomerase LA08_04000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA08_04000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA08_04000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA08_04000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA08_04005 PF01144 Coenzyme A transferase LA08_04010 PF01144 Coenzyme A transferase LA08_04015 PF14307 Glycosyltransferase WbsX LA08_04015 PF05045 Rhamnan synthesis protein F LA08_04040 PF03886 ABC-type transport auxiliary lipoprotein component LA08_04040 PF02470 MlaD protein LA08_04045 PF00005 ABC transporter LA08_04050 PF02405 Permease MlaE LA08_04060 PF00816 H-NS histone family LA08_04065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA08_04065 PF03129 Anticodon binding domain LA08_04065 PF04073 Aminoacyl-tRNA editing domain LA08_04075 PF01066 CDP-alcohol phosphatidyltransferase LA08_04105 PF05598 Transposase domain (DUF772) LA08_04105 PF01609 Transposase DDE domain LA08_04120 PF01464 Transglycosylase SLT domain LA08_04120 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LA08_04125 PF00544 Pectate lyase LA08_04175 PF10458 Valyl tRNA synthetase tRNA binding arm LA08_04175 PF08264 Anticodon-binding domain of tRNA LA08_04175 PF00133 tRNA synthetases class I (I, L, M and V) LA08_04190 PF02789 Cytosol aminopeptidase family, N-terminal domain LA08_04190 PF00883 Cytosol aminopeptidase family, catalytic domain LA08_04200 PF03739 Lipopolysaccharide export system permease LptF/LptG LA08_04215 PF00589 Phage integrase family LA08_04215 PF02899 Phage integrase, N-terminal SAM-like domain LA08_04220 PF10411 Disulfide bond isomerase protein N-terminus LA08_04220 PF13098 Thioredoxin-like domain LA08_04225 PF02769 AIR synthase related protein, C-terminal domain LA08_04225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LA08_04225 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LA08_04235 PF05658 Head domain of trimeric autotransporter adhesin LA08_04235 PF05662 Coiled stalk of trimeric autotransporter adhesin LA08_04235 PF03895 YadA-like membrane anchor domain LA08_04235 PF13018 Extended Signal Peptide of Type V secretion system LA08_04255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA08_04255 PF00437 Type II/IV secretion system protein LA08_04265 PF00482 Type II secretion system (T2SS), protein F LA08_04270 PF08334 Type II secretion system (T2SS), protein G LA08_04275 PF12019 Type II transport protein GspH LA08_04280 PF07963 Prokaryotic N-terminal methylation motif LA08_04290 PF03934 Type II secretion system (T2SS), protein K LA08_04295 PF05137 Fimbrial assembly protein (PilN) LA08_04300 PF10741 Type II secretion system (T2SS), protein M subtype b LA08_04310 PF00263 Bacterial type II and III secretion system protein LA08_04310 PF03958 Bacterial type II/III secretion system short domain LA08_04325 PF07702 UTRA domain LA08_04325 PF00392 Bacterial regulatory proteins, gntR family LA08_04340 PF00593 TonB dependent receptor LA08_04340 PF07715 TonB-dependent Receptor Plug Domain LA08_04380 PF09827 CRISPR associated protein Cas2 LA08_04385 PF01867 CRISPR associated protein Cas1 LA08_04405 PF09704 CRISPR-associated protein (Cas_Cas5) LA08_04425 PF02545 Maf-like protein LA08_04430 PF02620 Large ribosomal RNA subunit accumulation protein YceD LA08_04435 PF01783 Ribosomal L32p protein family LA08_04440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA08_04440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA08_04450 PF00698 Acyl transferase domain LA08_04460 PF00550 Phosphopantetheine attachment site LA08_04465 PF02801 Beta-ketoacyl synthase, C-terminal domain LA08_04465 PF00109 Beta-ketoacyl synthase, N-terminal domain LA08_04470 PF04715 Anthranilate synthase component I, N terminal region LA08_04470 PF00425 chorismate binding enzyme LA08_04475 PF02618 YceG-like family LA08_04480 PF09115 DNA polymerase III, delta subunit, C terminal LA08_04510 PF00158 Sigma-54 interaction domain LA08_04510 PF06506 Propionate catabolism activator LA08_04510 PF02954 Bacterial regulatory protein, Fis family LA08_04520 PF00285 Citrate synthase, C-terminal domain LA08_04525 PF00330 Aconitase family (aconitate hydratase) LA08_04525 PF00694 Aconitase C-terminal domain LA08_04540 PF04303 PrpF protein LA08_04545 PF05598 Transposase domain (DUF772) LA08_04545 PF01609 Transposase DDE domain LA08_04550 PF00593 TonB dependent receptor LA08_04550 PF07715 TonB-dependent Receptor Plug Domain LA08_04595 PF00665 Integrase core domain LA08_04595 PF13936 Helix-turn-helix domain LA08_04605 PF08534 Redoxin LA08_04615 PF01556 DnaJ C terminal domain LA08_04615 PF00226 DnaJ domain LA08_04620 PF00072 Response regulator receiver domain LA08_04625 PF12221 Bacterial membrane protein N terminal LA08_04625 PF01145 SPFH domain / Band 7 family LA08_04630 PF01145 SPFH domain / Band 7 family LA08_04640 PF00709 Adenylosuccinate synthetase LA08_04645 PF11838 ERAP1-like C-terminal domain LA08_04645 PF01433 Peptidase family M1 domain LA08_04655 PF05598 Transposase domain (DUF772) LA08_04695 PF03279 Bacterial lipid A biosynthesis acyltransferase LA08_04700 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LA08_04705 PF02321 Outer membrane efflux protein LA08_04730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_04735 PF00330 Aconitase family (aconitate hydratase) LA08_04740 PF00694 Aconitase C-terminal domain LA08_04750 PF00180 Isocitrate/isopropylmalate dehydrogenase LA08_04755 PF00682 HMGL-like LA08_04755 PF08502 LeuA allosteric (dimerisation) domain LA08_04760 PF00291 Pyridoxal-phosphate dependent enzyme LA08_04770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA08_04770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA08_04770 PF00205 Thiamine pyrophosphate enzyme, central domain LA08_04775 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LA08_04775 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LA08_04785 PF13667 ThiC-associated domain LA08_04785 PF01964 Radical SAM ThiC family LA08_04790 PF00486 Transcriptional regulatory protein, C terminal LA08_04790 PF18500 CadC C-terminal domain 1 LA08_04795 PF12833 Helix-turn-helix domain LA08_04800 PF00593 TonB dependent receptor LA08_04800 PF07715 TonB-dependent Receptor Plug Domain LA08_04815 PF00719 Inorganic pyrophosphatase LA08_04835 PF03030 Inorganic H+ pyrophosphatase LA08_04855 PF00365 Phosphofructokinase LA08_04865 PF01225 Mur ligase family, catalytic domain LA08_04865 PF08245 Mur ligase middle domain LA08_04865 PF02875 Mur ligase family, glutamate ligase domain LA08_04875 PF01062 Bestrophin, RFP-TM, chloride channel LA08_04895 PF00043 Glutathione S-transferase, C-terminal domain LA08_04895 PF02798 Glutathione S-transferase, N-terminal domain LA08_04900 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LA08_04900 PF00056 lactate/malate dehydrogenase, NAD binding domain LA08_04905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LA08_04930 PF01474 Class-II DAHP synthetase family LA08_04940 PF02600 Disulfide bond formation protein DsbB LA08_05065 PF01609 Transposase DDE domain LA08_05065 PF05598 Transposase domain (DUF772) LA08_05090 PF03009 Glycerophosphoryl diester phosphodiesterase family LA08_05115 PF00180 Isocitrate/isopropylmalate dehydrogenase LA08_05115 PF18324 Hypothetical protein TT1725 LA08_05170 PF05697 Bacterial trigger factor protein (TF) LA08_05170 PF05698 Bacterial trigger factor protein (TF) C-terminus LA08_05175 PF00574 Clp protease LA08_05180 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_05180 PF06689 ClpX C4-type zinc finger LA08_05180 PF07724 AAA domain (Cdc48 subfamily) LA08_05185 PF02190 ATP-dependent protease La (LON) substrate-binding domain LA08_05185 PF05362 Lon protease (S16) C-terminal proteolytic domain LA08_05185 PF00004 ATPase family associated with various cellular activities (AAA) LA08_05190 PF00216 Bacterial DNA-binding protein LA08_05215 PF05257 CHAP domain LA08_05215 PF01476 LysM domain LA08_05220 PF00753 Metallo-beta-lactamase superfamily LA08_05220 PF16123 Hydroxyacylglutathione hydrolase C-terminus LA08_05230 PF00075 RNase H LA08_05235 PF00929 Exonuclease LA08_05270 PF16671 Actin cross-linking domain LA08_05270 PF04717 Type VI secretion system, phage-baseplate injector LA08_05330 PF13356 Arm DNA-binding domain LA08_05330 PF00589 Phage integrase family LA08_05340 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LA08_05350 PF12706 Beta-lactamase superfamily domain LA08_05350 PF00753 Metallo-beta-lactamase superfamily LA08_05355 PF06463 Molybdenum Cofactor Synthesis C LA08_05355 PF04055 Radical SAM superfamily LA08_05365 PF01967 MoaC family LA08_05370 PF02597 ThiS family LA08_05375 PF02391 MoaE protein LA08_05390 PF12170 DNA polymerase III tau subunit V interacting with alpha LA08_05390 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LA08_05390 PF12169 DNA polymerase III subunits gamma and tau domain III LA08_05395 PF02575 YbaB/EbfC DNA-binding family LA08_05400 PF02132 RecR protein LA08_05400 PF13662 Toprim domain LA08_05405 PF01230 HIT domain LA08_05415 PF13559 Domain of unknown function (DUF4129) LA08_05415 PF01841 Transglutaminase-like superfamily LA08_05415 PF11992 Domain of unknown function (DUF3488) LA08_05425 PF17863 AAA lid domain LA08_05425 PF07726 ATPase family associated with various cellular activities (AAA) LA08_05445 PF01327 Polypeptide deformylase LA08_05495 PF01609 Transposase DDE domain LA08_05495 PF05598 Transposase domain (DUF772) LA08_05525 PF00462 Glutaredoxin LA08_05530 PF01522 Polysaccharide deacetylase LA08_05555 PF03193 RsgA GTPase LA08_05570 PF00128 Alpha amylase, catalytic domain LA08_05590 PF00356 Bacterial regulatory proteins, lacI family LA08_05595 PF00106 short chain dehydrogenase LA08_05600 PF03600 Citrate transporter LA08_05615 PF00072 Response regulator receiver domain LA08_05615 PF00486 Transcriptional regulatory protein, C terminal LA08_05620 PF00512 His Kinase A (phospho-acceptor) domain LA08_05620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_05620 PF08521 Two-component sensor kinase N-terminal LA08_05630 PF00196 Bacterial regulatory proteins, luxR family LA08_05630 PF00072 Response regulator receiver domain LA08_05650 PF03466 LysR substrate binding domain LA08_05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_05660 PF07690 Major Facilitator Superfamily LA08_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_05665 PF00512 His Kinase A (phospho-acceptor) domain LA08_05680 PF00375 Sodium:dicarboxylate symporter family LA08_05685 PF01515 Phosphate acetyl/butaryl transferase LA08_05685 PF00390 Malic enzyme, N-terminal domain LA08_05685 PF03949 Malic enzyme, NAD binding domain LA08_05720 PF02581 Thiamine monophosphate synthase LA08_05725 PF00301 Rubredoxin LA08_05730 PF13369 Transglutaminase-like superfamily LA08_05740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LA08_05750 PF01812 5-formyltetrahydrofolate cyclo-ligase family LA08_05760 PF05164 Cell division protein ZapA LA08_05770 PF03695 Uncharacterised protein family (UPF0149) LA08_05775 PF00557 Metallopeptidase family M24 LA08_05775 PF05195 Aminopeptidase P, N-terminal domain LA08_05795 PF00557 Metallopeptidase family M24 LA08_05810 PF04055 Radical SAM superfamily LA08_05810 PF06969 HemN C-terminal domain LA08_05815 PF01725 Ham1 family LA08_05825 PF01138 3' exoribonuclease family, domain 1 LA08_05825 PF03725 3' exoribonuclease family, domain 2 LA08_05830 PF03755 YicC-like family, N-terminal region LA08_05830 PF08340 Domain of unknown function (DUF1732) LA08_05835 PF00625 Guanylate kinase LA08_05850 PF01192 RNA polymerase Rpb6 LA08_05855 PF04607 Region found in RelA / SpoT proteins LA08_05855 PF02824 TGS domain LA08_05855 PF13291 ACT domain LA08_05860 PF01042 Endoribonuclease L-PSP LA08_05865 PF00270 DEAD/DEAH box helicase LA08_05865 PF17191 RecG wedge domain LA08_05865 PF00271 Helicase conserved C-terminal domain LA08_05870 PF01156 Inosine-uridine preferring nucleoside hydrolase LA08_05875 PF01197 Ribosomal protein L31 LA08_05880 PF00285 Citrate synthase, C-terminal domain LA08_05890 PF00912 Transglycosylase LA08_05890 PF17092 Penicillin-binding protein OB-like domain LA08_05890 PF00905 Penicillin binding protein transpeptidase domain LA08_05915 PF00263 Bacterial type II and III secretion system protein LA08_05915 PF11741 AMIN domain LA08_05915 PF03958 Bacterial type II/III secretion system short domain LA08_05915 PF07660 Secretin and TonB N terminus short domain LA08_05940 PF07726 ATPase family associated with various cellular activities (AAA) LA08_05940 PF17863 AAA lid domain LA08_05960 PF07584 Aerotolerance regulator N-terminal LA08_05960 PF00092 von Willebrand factor type A domain LA08_05980 PF00375 Sodium:dicarboxylate symporter family LA08_05985 PF02780 Transketolase, C-terminal domain LA08_05985 PF00456 Transketolase, thiamine diphosphate binding domain LA08_05985 PF02779 Transketolase, pyrimidine binding domain LA08_05995 PF01551 Peptidase family M23 LA08_05995 PF04225 Opacity-associated protein A LysM-like domain LA08_06000 PF03734 L,D-transpeptidase catalytic domain LA08_06000 PF01476 LysM domain LA08_06025 PF00501 AMP-binding enzyme LA08_06045 PF00486 Transcriptional regulatory protein, C terminal LA08_06045 PF00072 Response regulator receiver domain LA08_06050 PF00512 His Kinase A (phospho-acceptor) domain LA08_06050 PF08521 Two-component sensor kinase N-terminal LA08_06050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_06070 PF03459 TOBE domain LA08_06070 PF00005 ABC transporter LA08_06075 PF00528 Binding-protein-dependent transport system inner membrane component LA08_06085 PF04273 Putative phosphatase (DUF442) LA08_06085 PF00753 Metallo-beta-lactamase superfamily LA08_06120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LA08_06120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LA08_06140 PF00512 His Kinase A (phospho-acceptor) domain LA08_06140 PF00672 HAMP domain LA08_06140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_06145 PF00072 Response regulator receiver domain LA08_06145 PF00486 Transcriptional regulatory protein, C terminal LA08_06155 PF18030 RimK PreATP-grasp domain LA08_06155 PF08443 RimK-like ATP-grasp domain LA08_06195 PF00027 Cyclic nucleotide-binding domain LA08_06195 PF00520 Ion transport protein LA08_06200 PF00202 Aminotransferase class-III LA08_06215 PF01593 Flavin containing amine oxidoreductase LA08_06220 PF00034 Cytochrome c LA08_06220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LA08_06235 PF00127 Copper binding proteins, plastocyanin/azurin family LA08_06245 PF00202 Aminotransferase class-III LA08_06265 PF13276 HTH-like domain LA08_06265 PF00665 Integrase core domain LA08_06265 PF13333 Integrase core domain LA08_06275 PF03377 TAL effector repeat LA08_06290 PF03377 TAL effector repeat LA08_06305 PF03377 TAL effector repeat LA08_06325 PF01208 Uroporphyrinogen decarboxylase (URO-D) LA08_06335 PF01761 3-dehydroquinate synthase LA08_06340 PF01202 Shikimate kinase LA08_06345 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LA08_06345 PF01243 Pyridoxamine 5'-phosphate oxidase LA08_06355 PF04012 PspA/IM30 family LA08_06380 PF03738 Glutathionylspermidine synthase preATP-grasp LA08_06395 PF00376 MerR family regulatory protein LA08_06395 PF09278 MerR, DNA binding LA08_06430 PF12706 Beta-lactamase superfamily domain LA08_06450 PF00324 Amino acid permease LA08_06455 PF00196 Bacterial regulatory proteins, luxR family LA08_06460 PF00561 alpha/beta hydrolase fold LA08_06470 PF00324 Amino acid permease LA08_06490 PF01654 Cytochrome bd terminal oxidase subunit I LA08_06495 PF02322 Cytochrome bd terminal oxidase subunit II LA08_06500 PF00756 Putative esterase LA08_06505 PF00571 CBS domain LA08_06505 PF01769 Divalent cation transporter LA08_06505 PF03448 MgtE intracellular N domain LA08_06515 PF02896 PEP-utilising enzyme, TIM barrel domain LA08_06515 PF00391 PEP-utilising enzyme, mobile domain LA08_06515 PF05524 PEP-utilising enzyme, N-terminal LA08_06520 PF00381 PTS HPr component phosphorylation site LA08_06530 PF03668 P-loop ATPase protein family LA08_06535 PF02603 HPr Serine kinase N terminus LA08_06535 PF07475 HPr Serine kinase C-terminal domain LA08_06540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA08_06545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LA08_06550 PF04963 Sigma-54 factor, core binding domain LA08_06550 PF04552 Sigma-54, DNA binding domain LA08_06550 PF00309 Sigma-54 factor, Activator interacting domain (AID) LA08_06555 PF00005 ABC transporter LA08_06560 PF03968 OstA-like protein LA08_06575 PF00571 CBS domain LA08_06575 PF01380 SIS domain LA08_06580 PF01722 BolA-like protein LA08_06590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA08_06610 PF00551 Formyl transferase LA08_06625 PF02769 AIR synthase related protein, C-terminal domain LA08_06625 PF00586 AIR synthase related protein, N-terminal domain LA08_06635 PF01594 AI-2E family transporter LA08_06640 PF00308 Bacterial dnaA protein LA08_06645 PF00483 Nucleotidyl transferase LA08_06650 PF01636 Phosphotransferase enzyme family LA08_06665 PF01546 Peptidase family M20/M25/M40 LA08_06665 PF07687 Peptidase dimerisation domain LA08_06705 PF06964 Alpha-L-arabinofuranosidase C-terminal domain LA08_06710 PF01263 Aldose 1-epimerase LA08_06715 PF01578 Cytochrome C assembly protein LA08_06730 PF02978 Signal peptide binding domain LA08_06730 PF00448 SRP54-type protein, GTPase domain LA08_06730 PF02881 SRP54-type protein, helical bundle domain LA08_06745 PF03060 Nitronate monooxygenase LA08_06755 PF00886 Ribosomal protein S16 LA08_06760 PF05239 PRC-barrel domain LA08_06760 PF01782 RimM N-terminal domain LA08_06765 PF01746 tRNA (Guanine-1)-methyltransferase LA08_06770 PF01245 Ribosomal protein L19 LA08_06780 PF01554 MatE LA08_06785 PF01479 S4 domain LA08_06815 PF01541 GIY-YIG catalytic domain LA08_06820 PF17871 AAA lid domain LA08_06820 PF02861 Clp amino terminal domain, pathogenicity island component LA08_06820 PF07724 AAA domain (Cdc48 subfamily) LA08_06820 PF00004 ATPase family associated with various cellular activities (AAA) LA08_06820 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_06860 PF07715 TonB-dependent Receptor Plug Domain LA08_06860 PF00593 TonB dependent receptor LA08_06885 PF12557 Cob(I)alamin adenosyltransferase N terminal LA08_06885 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LA08_06895 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LA08_06900 PF02277 Phosphoribosyltransferase LA08_06910 PF02654 Cobalamin-5-phosphate synthase LA08_06920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LA08_06920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LA08_06930 PF07690 Major Facilitator Superfamily LA08_06935 PF06276 Ferric iron reductase FhuF-like transporter LA08_06935 PF04183 IucA / IucC family LA08_06945 PF07660 Secretin and TonB N terminus short domain LA08_06945 PF07715 TonB-dependent Receptor Plug Domain LA08_06945 PF00593 TonB dependent receptor LA08_06960 PF02254 TrkA-N domain LA08_06960 PF00999 Sodium/hydrogen exchanger family LA08_06970 PF00593 TonB dependent receptor LA08_06970 PF07715 TonB-dependent Receptor Plug Domain LA08_06975 PF07715 TonB-dependent Receptor Plug Domain LA08_06975 PF00593 TonB dependent receptor LA08_06990 PF07715 TonB-dependent Receptor Plug Domain LA08_06990 PF00593 TonB dependent receptor LA08_06995 PF12848 ABC transporter LA08_06995 PF00005 ABC transporter LA08_07010 PF03466 LysR substrate binding domain LA08_07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_07020 PF07859 alpha/beta hydrolase fold LA08_07020 PF13472 GDSL-like Lipase/Acylhydrolase family LA08_07040 PF12833 Helix-turn-helix domain LA08_07045 PF00183 Hsp90 protein LA08_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_07075 PF00872 Transposase, Mutator family LA08_07080 PF00120 Glutamine synthetase, catalytic domain LA08_07085 PF04204 Homoserine O-succinyltransferase LA08_07090 PF01810 LysE type translocator LA08_07095 PF07722 Peptidase C26 LA08_07105 PF01053 Cys/Met metabolism PLP-dependent enzyme LA08_07140 PF00355 Rieske [2Fe-2S] domain LA08_07150 PF00266 Aminotransferase class-V LA08_07155 PF01458 Uncharacterized protein family (UPF0051) LA08_07160 PF00005 ABC transporter LA08_07165 PF01458 Uncharacterized protein family (UPF0051) LA08_07170 PF02082 Transcriptional regulator LA08_07190 PF01965 DJ-1/PfpI family LA08_07230 PF14748 Pyrroline-5-carboxylate reductase dimerisation LA08_07230 PF03807 NADP oxidoreductase coenzyme F420-dependent LA08_07235 PF01168 Alanine racemase, N-terminal domain LA08_07240 PF00437 Type II/IV secretion system protein LA08_07245 PF00437 Type II/IV secretion system protein LA08_07270 PF00117 Glutamine amidotransferase class-I LA08_07270 PF13673 Acetyltransferase (GNAT) domain LA08_07270 PF00958 GMP synthase C terminal domain LA08_07270 PF03352 Methyladenine glycosylase LA08_07270 PF13302 Acetyltransferase (GNAT) domain LA08_07280 PF02622 Uncharacterized ACR, COG1678 LA08_07285 PF03652 Holliday junction resolvase LA08_07290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA08_07290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA08_07300 PF02566 OsmC-like protein LA08_07310 PF02567 Phenazine biosynthesis-like protein LA08_07320 PF00696 Amino acid kinase family LA08_07320 PF01842 ACT domain LA08_07335 PF08245 Mur ligase middle domain LA08_07350 PF00348 Polyprenyl synthetase LA08_07355 PF00436 Single-strand binding protein family LA08_07360 PF00360 Phytochrome region LA08_07360 PF00990 Diguanylate cyclase, GGDEF domain LA08_07360 PF01590 GAF domain LA08_07360 PF00563 EAL domain LA08_07395 PF04328 Selenoprotein, putative LA08_07400 PF13722 5TM C-terminal transporter carbon starvation CstA LA08_07400 PF02554 Carbon starvation protein CstA LA08_07405 PF02678 Pirin LA08_07405 PF05726 Pirin C-terminal cupin domain LA08_07415 PF04717 Type VI secretion system, phage-baseplate injector LA08_07435 PF04717 Type VI secretion system, phage-baseplate injector LA08_07465 PF04717 Type VI secretion system, phage-baseplate injector LA08_07520 PF05726 Pirin C-terminal cupin domain LA08_07520 PF02678 Pirin LA08_07530 PF04493 Endonuclease V LA08_07535 PF00300 Histidine phosphatase superfamily (branch 1) LA08_07550 PF01431 Peptidase family M13 LA08_07550 PF05649 Peptidase family M13 LA08_07560 PF00072 Response regulator receiver domain LA08_07560 PF01339 CheB methylesterase LA08_07565 PF03705 CheR methyltransferase, all-alpha domain LA08_07565 PF01739 CheR methyltransferase, SAM binding domain LA08_07570 PF00563 EAL domain LA08_07570 PF00990 Diguanylate cyclase, GGDEF domain LA08_07570 PF13426 PAS domain LA08_07575 PF01584 CheW-like domain LA08_07580 PF02203 Tar ligand binding domain homologue LA08_07580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_07580 PF00672 HAMP domain LA08_07585 PF09078 CheY binding LA08_07585 PF01584 CheW-like domain LA08_07585 PF02895 Signal transducing histidine kinase, homodimeric domain LA08_07585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_07585 PF01627 Hpt domain LA08_07595 PF02559 CarD-like/TRCF domain LA08_07595 PF03461 TRCF domain LA08_07595 PF00271 Helicase conserved C-terminal domain LA08_07595 PF17757 UvrB interaction domain LA08_07595 PF00270 DEAD/DEAH box helicase LA08_07605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LA08_07625 PF00672 HAMP domain LA08_07625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_07625 PF00512 His Kinase A (phospho-acceptor) domain LA08_07640 PF05598 Transposase domain (DUF772) LA08_07640 PF01609 Transposase DDE domain LA08_07660 PF05598 Transposase domain (DUF772) LA08_07660 PF01609 Transposase DDE domain LA08_07685 PF05598 Transposase domain (DUF772) LA08_07685 PF01609 Transposase DDE domain LA08_07705 PF01609 Transposase DDE domain LA08_07705 PF05598 Transposase domain (DUF772) LA08_07735 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA08_07740 PF01475 Ferric uptake regulator family LA08_07785 PF00313 'Cold-shock' DNA-binding domain LA08_07800 PF00899 ThiF family LA08_07805 PF01026 TatD related DNase LA08_07820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_07820 PF02770 Acyl-CoA dehydrogenase, middle domain LA08_07820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_07830 PF13417 Glutathione S-transferase, N-terminal domain LA08_07835 PF00733 Asparagine synthase LA08_07835 PF13537 Glutamine amidotransferase domain LA08_07840 PF03358 NADPH-dependent FMN reductase LA08_07845 PF00772 DnaB-like helicase N terminal domain LA08_07845 PF03796 DnaB-like helicase C terminal domain LA08_07850 PF03441 FAD binding domain of DNA photolyase LA08_07850 PF00875 DNA photolyase LA08_07865 PF05736 OprF membrane domain LA08_07865 PF00691 OmpA family LA08_07900 PF00107 Zinc-binding dehydrogenase LA08_07900 PF08240 Alcohol dehydrogenase GroES-like domain LA08_07905 PF00654 Voltage gated chloride channel LA08_07915 PF05598 Transposase domain (DUF772) LA08_07915 PF01609 Transposase DDE domain LA08_07920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LA08_07920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LA08_07925 PF02805 Metal binding domain of Ada LA08_07925 PF06029 AlkA N-terminal domain LA08_07925 PF12833 Helix-turn-helix domain LA08_07925 PF00730 HhH-GPD superfamily base excision DNA repair protein LA08_07970 PF00271 Helicase conserved C-terminal domain LA08_07970 PF00270 DEAD/DEAH box helicase LA08_07970 PF03880 DbpA RNA binding domain LA08_07975 PF00990 Diguanylate cyclase, GGDEF domain LA08_07975 PF00563 EAL domain LA08_07975 PF08448 PAS fold LA08_07980 PF00849 RNA pseudouridylate synthase LA08_07980 PF01479 S4 domain LA08_08005 PF03737 Aldolase/RraA LA08_08010 PF00144 Beta-lactamase LA08_08015 PF00999 Sodium/hydrogen exchanger family LA08_08020 PF00672 HAMP domain LA08_08020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_08020 PF00512 His Kinase A (phospho-acceptor) domain LA08_08025 PF00072 Response regulator receiver domain LA08_08025 PF00486 Transcriptional regulatory protein, C terminal LA08_08030 PF02321 Outer membrane efflux protein LA08_08045 PF00873 AcrB/AcrD/AcrF family LA08_08055 PF00005 ABC transporter LA08_08055 PF00664 ABC transporter transmembrane region LA08_08080 PF01609 Transposase DDE domain LA08_08080 PF05598 Transposase domain (DUF772) LA08_08095 PF05598 Transposase domain (DUF772) LA08_08095 PF01609 Transposase DDE domain LA08_08135 PF01121 Dephospho-CoA kinase LA08_08140 PF06750 Bacterial Peptidase A24 N-terminal domain LA08_08140 PF01478 Type IV leader peptidase family LA08_08145 PF00482 Type II secretion system (T2SS), protein F LA08_08150 PF00114 Pilin (bacterial filament) LA08_08150 PF07963 Prokaryotic N-terminal methylation motif LA08_08155 PF08019 Phosphoethanolamine transferase EptA/EptB LA08_08155 PF00884 Sulfatase LA08_08170 PF00437 Type II/IV secretion system protein LA08_08170 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA08_08185 PF00072 Response regulator receiver domain LA08_08185 PF00158 Sigma-54 interaction domain LA08_08185 PF02954 Bacterial regulatory protein, Fis family LA08_08190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_08190 PF00512 His Kinase A (phospho-acceptor) domain LA08_08195 PF08442 ATP-grasp domain LA08_08195 PF00549 CoA-ligase LA08_08200 PF00549 CoA-ligase LA08_08200 PF02629 CoA binding domain LA08_08215 PF02540 NAD synthase LA08_08215 PF00795 Carbon-nitrogen hydrolase LA08_08220 PF13525 Outer membrane lipoprotein LA08_08225 PF00849 RNA pseudouridylate synthase LA08_08245 PF00982 Glycosyltransferase family 20 LA08_08250 PF00723 Glycosyl hydrolases family 15 LA08_08255 PF02358 Trehalose-phosphatase LA08_08265 PF07715 TonB-dependent Receptor Plug Domain LA08_08265 PF00593 TonB dependent receptor LA08_08295 PF04377 Arginine-tRNA-protein transferase, C terminus LA08_08295 PF04376 Arginine-tRNA-protein transferase, N terminus LA08_08315 PF04542 Sigma-70 region 2 LA08_08315 PF08281 Sigma-70, region 4 LA08_08330 PF00378 Enoyl-CoA hydratase/isomerase LA08_08345 PF17755 UvrA DNA-binding domain LA08_08345 PF00005 ABC transporter LA08_08345 PF17760 UvrA interaction domain LA08_08350 PF00829 Ribosomal prokaryotic L21 protein LA08_08355 PF01016 Ribosomal L27 protein LA08_08360 PF01018 GTP1/OBG LA08_08360 PF01926 50S ribosome-binding GTPase LA08_08365 PF01649 Ribosomal protein S20 LA08_08370 PF03023 Lipid II flippase MurJ LA08_08375 PF01687 Riboflavin kinase LA08_08375 PF06574 FAD synthetase LA08_08380 PF08264 Anticodon-binding domain of tRNA LA08_08380 PF00133 tRNA synthetases class I (I, L, M and V) LA08_08380 PF06827 Zinc finger found in FPG and IleRS LA08_08385 PF01252 Signal peptidase (SPase) II LA08_08390 PF02401 LytB protein LA08_08400 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LA08_08400 PF06481 COX Aromatic Rich Motif LA08_08405 PF00115 Cytochrome C and Quinol oxidase polypeptide I LA08_08410 PF00510 Cytochrome c oxidase subunit III LA08_08415 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LA08_08425 PF04717 Type VI secretion system, phage-baseplate injector LA08_08435 PF03527 RHS protein LA08_08435 PF05593 RHS Repeat LA08_08435 PF14220 Domain of unknown function (DUF4329) LA08_08435 PF05593 RHS Repeat LA08_08435 PF03527 RHS protein LA08_08435 PF14220 Domain of unknown function (DUF4329) LA08_08465 PF01624 MutS domain I LA08_08465 PF05188 MutS domain II LA08_08465 PF05192 MutS domain III LA08_08465 PF05190 MutS family domain IV LA08_08465 PF00488 MutS domain V LA08_08490 PF18073 Rubredoxin metal binding domain LA08_08530 PF00152 tRNA synthetases class II (D, K and N) LA08_08530 PF02938 GAD domain LA08_08530 PF01336 OB-fold nucleic acid binding domain LA08_08545 PF01709 Transcriptional regulator LA08_08550 PF02075 Crossover junction endodeoxyribonuclease RuvC LA08_08555 PF07499 RuvA, C-terminal domain LA08_08555 PF01330 RuvA N terminal domain LA08_08560 PF02705 K+ potassium transporter LA08_08565 PF17864 RuvB AAA lid domain LA08_08565 PF05491 RuvB C-terminal winged helix domain LA08_08565 PF05496 Holliday junction DNA helicase RuvB P-loop domain LA08_08570 PF03061 Thioesterase superfamily LA08_08575 PF01618 MotA/TolQ/ExbB proton channel family LA08_08580 PF02472 Biopolymer transport protein ExbD/TolR LA08_08590 PF04052 TolB amino-terminal domain LA08_08590 PF07676 WD40-like Beta Propeller Repeat LA08_08595 PF00691 OmpA family LA08_08605 PF04055 Radical SAM superfamily LA08_08615 PF00849 RNA pseudouridylate synthase LA08_08615 PF01479 S4 domain LA08_08665 PF05598 Transposase domain (DUF772) LA08_08675 PF06508 Queuosine biosynthesis protein QueC LA08_08700 PF16124 RecQ zinc-binding LA08_08700 PF00271 Helicase conserved C-terminal domain LA08_08700 PF00570 HRDC domain LA08_08700 PF00270 DEAD/DEAH box helicase LA08_08700 PF09382 RQC domain LA08_08710 PF00210 Ferritin-like domain LA08_08715 PF00271 Helicase conserved C-terminal domain LA08_08715 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LA08_08715 PF11898 Domain of unknown function (DUF3418) LA08_08715 PF00270 DEAD/DEAH box helicase LA08_08715 PF04408 Helicase associated domain (HA2) LA08_08745 PF04055 Radical SAM superfamily LA08_08745 PF13186 Iron-sulfur cluster-binding domain LA08_08750 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LA08_08755 PF03070 TENA/THI-4/PQQC family LA08_08760 PF12706 Beta-lactamase superfamily domain LA08_08765 PF08042 PqqA family LA08_08770 PF13291 ACT domain LA08_08770 PF02824 TGS domain LA08_08770 PF04607 Region found in RelA / SpoT proteins LA08_08780 PF00535 Glycosyl transferase family 2 LA08_08785 PF14814 Bifunctional transglycosylase second domain LA08_08785 PF00905 Penicillin binding protein transpeptidase domain LA08_08785 PF00912 Transglycosylase LA08_08795 PF13307 Helicase C-terminal domain LA08_08795 PF04851 Type III restriction enzyme, res subunit LA08_08800 PF00814 Glycoprotease family LA08_08805 PF03747 ADP-ribosylglycohydrolase LA08_08815 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LA08_08815 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LA08_08820 PF00072 Response regulator receiver domain LA08_08825 PF00072 Response regulator receiver domain LA08_08830 PF01584 CheW-like domain LA08_08835 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LA08_08835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_08840 PF01584 CheW-like domain LA08_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_08840 PF00072 Response regulator receiver domain LA08_08840 PF01627 Hpt domain LA08_08855 PF13302 Acetyltransferase (GNAT) domain LA08_08885 PF01112 Asparaginase LA08_08890 PF03932 CutC family LA08_08935 PF01301 Glycosyl hydrolases family 35 LA08_08945 PF17678 Glycosyl hydrolase family 92 N-terminal domain LA08_08945 PF07971 Glycosyl hydrolase family 92 LA08_09010 PF00664 ABC transporter transmembrane region LA08_09010 PF00005 ABC transporter LA08_09010 PF03412 Peptidase C39 family LA08_09015 PF07691 PA14 domain LA08_09015 PF01915 Glycosyl hydrolase family 3 C-terminal domain LA08_09015 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_09015 PF14310 Fibronectin type III-like domain LA08_09035 PF01476 LysM domain LA08_09035 PF00704 Glycosyl hydrolases family 18 LA08_09050 PF02685 Glucokinase LA08_09055 PF04452 RNA methyltransferase LA08_09060 PF00202 Aminotransferase class-III LA08_09065 PF00293 NUDIX domain LA08_09070 PF00459 Inositol monophosphatase family LA08_09075 PF03819 MazG nucleotide pyrophosphohydrolase domain LA08_09080 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LA08_09090 PF16200 C-terminal region of band_7 LA08_09090 PF01145 SPFH domain / Band 7 family LA08_09100 PF08669 Glycine cleavage T-protein C-terminal barrel domain LA08_09100 PF01571 Aminomethyltransferase folate-binding domain LA08_09105 PF01597 Glycine cleavage H-protein LA08_09140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_09140 PF09317 Domain of unknown function (DUF1974) LA08_09140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_09150 PF00440 Bacterial regulatory proteins, tetR family LA08_09155 PF00593 TonB dependent receptor LA08_09155 PF07715 TonB-dependent Receptor Plug Domain LA08_09165 PF01430 Hsp33 protein LA08_09170 PF00912 Transglycosylase LA08_09175 PF00535 Glycosyl transferase family 2 LA08_09195 PF03006 Haemolysin-III related LA08_09200 PF16658 Class II release factor RF3, C-terminal domain LA08_09200 PF00009 Elongation factor Tu GTP binding domain LA08_09205 PF08525 Opacity-associated protein A N-terminal motif LA08_09205 PF01476 LysM domain LA08_09205 PF01551 Peptidase family M23 LA08_09210 PF00561 alpha/beta hydrolase fold LA08_09215 PF01053 Cys/Met metabolism PLP-dependent enzyme LA08_09225 PF03315 Serine dehydratase beta chain LA08_09225 PF03313 Serine dehydratase alpha chain LA08_09240 PF04264 YceI-like domain LA08_09250 PF04264 YceI-like domain LA08_09255 PF00072 Response regulator receiver domain LA08_09255 PF01627 Hpt domain LA08_09255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_09255 PF00672 HAMP domain LA08_09255 PF00512 His Kinase A (phospho-acceptor) domain LA08_09255 PF17149 Periplasmic sensor domain found in signal transduction proteins LA08_09260 PF00512 His Kinase A (phospho-acceptor) domain LA08_09260 PF17149 Periplasmic sensor domain found in signal transduction proteins LA08_09260 PF00672 HAMP domain LA08_09260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_09260 PF01627 Hpt domain LA08_09260 PF00072 Response regulator receiver domain LA08_09265 PF00072 Response regulator receiver domain LA08_09265 PF17149 Periplasmic sensor domain found in signal transduction proteins LA08_09265 PF00672 HAMP domain LA08_09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_09265 PF00512 His Kinase A (phospho-acceptor) domain LA08_09265 PF01627 Hpt domain LA08_09300 PF07745 Glycosyl hydrolase family 53 LA08_09310 PF09856 Predicted transcriptional regulator (DUF2083) LA08_09310 PF06114 IrrE N-terminal-like domain LA08_09310 PF01381 Helix-turn-helix LA08_09315 PF00171 Aldehyde dehydrogenase family LA08_09320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_09320 PF02770 Acyl-CoA dehydrogenase, middle domain LA08_09320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_09325 PF00378 Enoyl-CoA hydratase/isomerase LA08_09330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA08_09330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA08_09330 PF00378 Enoyl-CoA hydratase/isomerase LA08_09335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LA08_09335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LA08_09340 PF01545 Cation efflux family LA08_09345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA08_09345 PF00378 Enoyl-CoA hydratase/isomerase LA08_09345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA08_09350 PF08281 Sigma-70, region 4 LA08_09350 PF04542 Sigma-70 region 2 LA08_09360 PF13180 PDZ domain LA08_09365 PF06421 GTP-binding protein LepA C-terminus LA08_09365 PF03144 Elongation factor Tu domain 2 LA08_09365 PF00679 Elongation factor G C-terminus LA08_09365 PF00009 Elongation factor Tu GTP binding domain LA08_09370 PF10502 Signal peptidase, peptidase S26 LA08_09380 PF00035 Double-stranded RNA binding motif LA08_09380 PF14622 Ribonuclease-III-like LA08_09385 PF07650 KH domain LA08_09385 PF01926 50S ribosome-binding GTPase LA08_09390 PF11967 Recombination protein O N terminal LA08_09390 PF02565 Recombination protein O C terminal LA08_09400 PF05958 tRNA (Uracil-5-)-methyltransferase LA08_09415 PF05598 Transposase domain (DUF772) LA08_09420 PF01323 DSBA-like thioredoxin domain LA08_09425 PF01593 Flavin containing amine oxidoreductase LA08_09430 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LA08_09435 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_09445 PF01048 Phosphorylase superfamily LA08_09450 PF00313 'Cold-shock' DNA-binding domain LA08_09470 PF08494 DEAD/H associated LA08_09470 PF00271 Helicase conserved C-terminal domain LA08_09470 PF00270 DEAD/DEAH box helicase LA08_09475 PF04679 ATP dependent DNA ligase C terminal region LA08_09475 PF04675 DNA ligase N terminus LA08_09475 PF01068 ATP dependent DNA ligase domain LA08_09485 PF04675 DNA ligase N terminus LA08_09485 PF01068 ATP dependent DNA ligase domain LA08_09485 PF04679 ATP dependent DNA ligase C terminal region LA08_09500 PF00990 Diguanylate cyclase, GGDEF domain LA08_09500 PF00072 Response regulator receiver domain LA08_09515 PF02803 Thiolase, C-terminal domain LA08_09515 PF00108 Thiolase, N-terminal domain LA08_09520 PF00082 Subtilase family LA08_09520 PF03797 Autotransporter beta-domain LA08_09520 PF12951 Passenger-associated-transport-repeat LA08_09525 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LA08_09525 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LA08_09540 PF01863 Protein of unknown function DUF45 LA08_09545 PF07043 Protein of unknown function (DUF1328) LA08_09555 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA08_09600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA08_09615 PF03831 PhnA domain LA08_09615 PF08274 PhnA Zinc-Ribbon LA08_09630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA08_09635 PF07690 Major Facilitator Superfamily LA08_09690 PF03706 Lysylphosphatidylglycerol synthase TM region LA08_09690 PF09924 Uncharacterised conserved protein (DUF2156) LA08_09700 PF01042 Endoribonuclease L-PSP LA08_09745 PF04542 Sigma-70 region 2 LA08_09745 PF04545 Sigma-70, region 4 LA08_09765 PF04060 Putative Fe-S cluster LA08_09775 PF09334 tRNA synthetases class I (M) LA08_09775 PF01588 Putative tRNA binding domain LA08_09795 PF00324 Amino acid permease LA08_09800 PF02574 Homocysteine S-methyltransferase LA08_09815 PF02592 Putative vitamin uptake transporter LA08_09830 PF05598 Transposase domain (DUF772) LA08_09850 PF00009 Elongation factor Tu GTP binding domain LA08_09920 PF13732 Domain of unknown function (DUF4162) LA08_09920 PF00005 ABC transporter LA08_09925 PF00593 TonB dependent receptor LA08_09925 PF07715 TonB-dependent Receptor Plug Domain LA08_09935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LA08_09940 PF07733 Bacterial DNA polymerase III alpha NTPase domain LA08_09940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LA08_09940 PF02811 PHP domain LA08_09940 PF14579 Helix-hairpin-helix motif LA08_09940 PF01336 OB-fold nucleic acid binding domain LA08_09945 PF01351 Ribonuclease HII LA08_09950 PF02684 Lipid-A-disaccharide synthetase LA08_09955 PF00132 Bacterial transferase hexapeptide (six repeats) LA08_09955 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LA08_09960 PF07977 FabA-like domain LA08_09965 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LA08_09965 PF00132 Bacterial transferase hexapeptide (six repeats) LA08_09975 PF01103 Surface antigen LA08_09975 PF07244 Surface antigen variable number repeat LA08_09980 PF02163 Peptidase family M50 LA08_09980 PF17820 PDZ domain LA08_09985 PF13288 DXP reductoisomerase C-terminal domain LA08_09985 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LA08_09985 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LA08_09995 PF01255 Putative undecaprenyl diphosphate synthase LA08_10000 PF01765 Ribosome recycling factor LA08_10005 PF00696 Amino acid kinase family LA08_10015 PF00889 Elongation factor TS LA08_10020 PF00318 Ribosomal protein S2 LA08_10055 PF00557 Metallopeptidase family M24 LA08_10060 PF01909 Nucleotidyltransferase domain LA08_10060 PF08335 GlnD PII-uridylyltransferase LA08_10060 PF01966 HD domain LA08_10065 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LA08_10065 PF14602 Hexapeptide repeat of succinyl-transferase LA08_10065 PF00132 Bacterial transferase hexapeptide (six repeats) LA08_10075 PF03960 ArsC family LA08_10085 PF07687 Peptidase dimerisation domain LA08_10085 PF01546 Peptidase family M20/M25/M40 LA08_10090 PF00733 Asparagine synthase LA08_10090 PF13537 Glutamine amidotransferase domain LA08_10105 PF07715 TonB-dependent Receptor Plug Domain LA08_10105 PF00593 TonB dependent receptor LA08_10110 PF01804 Penicillin amidase LA08_10115 PF00210 Ferritin-like domain LA08_10125 PF03989 DNA gyrase C-terminal domain, beta-propeller LA08_10125 PF00521 DNA gyrase/topoisomerase IV, subunit A LA08_10140 PF02321 Outer membrane efflux protein LA08_10145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_10145 PF00529 HlyD membrane-fusion protein of T1SS LA08_10150 PF07690 Major Facilitator Superfamily LA08_10195 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LA08_10195 PF02779 Transketolase, pyrimidine binding domain LA08_10195 PF02780 Transketolase, C-terminal domain LA08_10205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_10205 PF12806 Acetyl-CoA dehydrogenase C-terminal like LA08_10205 PF02770 Acyl-CoA dehydrogenase, middle domain LA08_10205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_10220 PF01668 SmpB protein LA08_10225 PF03364 Polyketide cyclase / dehydrase and lipid transport LA08_10230 PF03658 RnfH family Ubiquitin LA08_10240 PF04355 SmpA / OmlA family LA08_10245 PF01475 Ferric uptake regulator family LA08_10250 PF02463 RecF/RecN/SMC N terminal domain LA08_10255 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LA08_10255 PF01628 HrcA protein C terminal domain LA08_10260 PF01025 GrpE LA08_10265 PF00012 Hsp70 protein LA08_10270 PF00226 DnaJ domain LA08_10270 PF00684 DnaJ central domain LA08_10270 PF01556 DnaJ C terminal domain LA08_10280 PF08543 Phosphomethylpyrimidine kinase LA08_10285 PF01817 Chorismate mutase type II LA08_10285 PF02153 Prephenate dehydrogenase LA08_10305 PF03466 LysR substrate binding domain LA08_10305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_10320 PF00664 ABC transporter transmembrane region LA08_10320 PF00005 ABC transporter LA08_10325 PF01205 Uncharacterized protein family UPF0029 LA08_10330 PF03641 Possible lysine decarboxylase LA08_10335 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_10335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LA08_10340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LA08_10340 PF02817 e3 binding domain LA08_10340 PF00364 Biotin-requiring enzyme LA08_10345 PF00676 Dehydrogenase E1 component LA08_10345 PF16870 2-oxoglutarate dehydrogenase C-terminal LA08_10345 PF02779 Transketolase, pyrimidine binding domain LA08_10345 PF16078 2-oxoglutarate dehydrogenase N-terminus LA08_10355 PF08007 Cupin superfamily protein LA08_10375 PF00206 Lyase LA08_10375 PF08328 Adenylosuccinate lyase C-terminal LA08_10405 PF00206 Lyase LA08_10405 PF10415 Fumarase C C-terminus LA08_10435 PF00005 ABC transporter LA08_10440 PF00392 Bacterial regulatory proteins, gntR family LA08_10450 PF00255 Glutathione peroxidase LA08_10455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA08_10455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA08_10460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LA08_10460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LA08_10460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LA08_10465 PF04102 SlyX LA08_10485 PF07690 Major Facilitator Superfamily LA08_10490 PF00294 pfkB family carbohydrate kinase LA08_10500 PF02965 Vitamin B12 dependent methionine synthase, activation domain LA08_10500 PF00809 Pterin binding enzyme LA08_10500 PF02310 B12 binding domain LA08_10500 PF02574 Homocysteine S-methyltransferase LA08_10500 PF02607 B12 binding domain LA08_10505 PF00809 Pterin binding enzyme LA08_10505 PF02574 Homocysteine S-methyltransferase LA08_10510 PF01209 ubiE/COQ5 methyltransferase family LA08_10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_10515 PF02770 Acyl-CoA dehydrogenase, middle domain LA08_10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_10545 PF08206 Ribonuclease B OB domain LA08_10545 PF08461 Ribonuclease R winged-helix domain LA08_10545 PF17876 Cold shock domain LA08_10545 PF00773 RNB domain LA08_10545 PF00575 S1 RNA binding domain LA08_10565 PF08032 RNA 2'-O ribose methyltransferase substrate binding LA08_10565 PF00588 SpoU rRNA Methylase family LA08_10580 PF01609 Transposase DDE domain LA08_10580 PF05598 Transposase domain (DUF772) LA08_10605 PF00872 Transposase, Mutator family LA08_10615 PF00313 'Cold-shock' DNA-binding domain LA08_10620 PF00561 alpha/beta hydrolase fold LA08_10630 PF05598 Transposase domain (DUF772) LA08_10630 PF01609 Transposase DDE domain LA08_10635 PF05598 Transposase domain (DUF772) LA08_10635 PF01609 Transposase DDE domain LA08_10660 PF03544 Gram-negative bacterial TonB protein C-terminal LA08_10665 PF02403 Seryl-tRNA synthetase N-terminal domain LA08_10665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA08_10685 PF05598 Transposase domain (DUF772) LA08_10685 PF01609 Transposase DDE domain LA08_10690 PF02525 Flavodoxin-like fold LA08_10695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_10695 PF03466 LysR substrate binding domain LA08_10715 PF03377 TAL effector repeat LA08_10735 PF03377 TAL effector repeat LA08_10755 PF03377 TAL effector repeat LA08_10790 PF03079 ARD/ARD' family LA08_10795 PF00596 Class II Aldolase and Adducin N-terminal domain LA08_10800 PF13520 Amino acid permease LA08_10805 PF13520 Amino acid permease LA08_10815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA08_10815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA08_10820 PF02913 FAD linked oxidases, C-terminal domain LA08_10820 PF01565 FAD binding domain LA08_10845 PF03918 Cytochrome C biogenesis protein LA08_10850 PF08534 Redoxin LA08_10855 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA08_10855 PF01578 Cytochrome C assembly protein LA08_10860 PF03100 CcmE LA08_10870 PF01578 Cytochrome C assembly protein LA08_10875 PF03379 CcmB protein LA08_10880 PF00005 ABC transporter LA08_10885 PF00155 Aminotransferase class I and II LA08_10890 PF00795 Carbon-nitrogen hydrolase LA08_10910 PF00849 RNA pseudouridylate synthase LA08_10910 PF01479 S4 domain LA08_10915 PF04079 Segregation and condensation complex subunit ScpB LA08_10920 PF02616 Segregation and condensation protein ScpA LA08_10925 PF03795 YCII-related domain LA08_10935 PF00356 Bacterial regulatory proteins, lacI family LA08_10955 PF00528 Binding-protein-dependent transport system inner membrane component LA08_10960 PF00528 Binding-protein-dependent transport system inner membrane component LA08_10985 PF00795 Carbon-nitrogen hydrolase LA08_10995 PF04371 Porphyromonas-type peptidyl-arginine deiminase LA08_11005 PF00444 Ribosomal protein L36 LA08_11010 PF02224 Cytidylate kinase LA08_11015 PF00575 S1 RNA binding domain LA08_11020 PF00216 Bacterial DNA-binding protein LA08_11030 PF18073 Rubredoxin metal binding domain LA08_11035 PF00953 Glycosyl transferase family 4 LA08_11040 PF02719 Polysaccharide biosynthesis protein LA08_11045 PF00483 Nucleotidyl transferase LA08_11065 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LA08_11065 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LA08_11070 PF00478 IMP dehydrogenase / GMP reductase domain LA08_11070 PF00571 CBS domain LA08_11075 PF00117 Glutamine amidotransferase class-I LA08_11075 PF00958 GMP synthase C terminal domain LA08_11075 PF02540 NAD synthase LA08_11080 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LA08_11085 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LA08_11085 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LA08_11085 PF00361 Proton-conducting membrane transporter LA08_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_11090 PF03466 LysR substrate binding domain LA08_11115 PF03601 Conserved hypothetical protein 698 LA08_11120 PF03466 LysR substrate binding domain LA08_11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_11135 PF00072 Response regulator receiver domain LA08_11145 PF01566 Natural resistance-associated macrophage protein LA08_11150 PF01325 Iron dependent repressor, N-terminal DNA binding domain LA08_11150 PF02742 Iron dependent repressor, metal binding and dimerisation domain LA08_11155 PF14437 MafB19-like deaminase LA08_11160 PF00929 Exonuclease LA08_11165 PF05552 Conserved TM helix LA08_11165 PF00924 Mechanosensitive ion channel LA08_11170 PF00391 PEP-utilising enzyme, mobile domain LA08_11170 PF02896 PEP-utilising enzyme, TIM barrel domain LA08_11170 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LA08_11175 PF03618 Kinase/pyrophosphorylase LA08_11205 PF01609 Transposase DDE domain LA08_11205 PF05598 Transposase domain (DUF772) LA08_11230 PF01066 CDP-alcohol phosphatidyltransferase LA08_11240 PF00561 alpha/beta hydrolase fold LA08_11255 PF00355 Rieske [2Fe-2S] domain LA08_11255 PF01266 FAD dependent oxidoreductase LA08_11265 PF00575 S1 RNA binding domain LA08_11265 PF16921 Tex protein YqgF-like domain LA08_11265 PF09371 Tex-like protein N-terminal domain LA08_11265 PF17674 HHH domain LA08_11280 PF00072 Response regulator receiver domain LA08_11290 PF04551 GcpE protein LA08_11295 PF01569 PAP2 superfamily LA08_11305 PF07690 Major Facilitator Superfamily LA08_11320 PF01177 Asp/Glu/Hydantoin racemase LA08_11330 PF00892 EamA-like transporter family LA08_11335 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LA08_11335 PF01565 FAD binding domain LA08_11340 PF01180 Dihydroorotate dehydrogenase LA08_11355 PF00171 Aldehyde dehydrogenase family LA08_11370 PF03447 Homoserine dehydrogenase, NAD binding domain LA08_11370 PF00742 Homoserine dehydrogenase LA08_11370 PF13840 ACT domain LA08_11370 PF01842 ACT domain LA08_11370 PF00696 Amino acid kinase family LA08_11375 PF00288 GHMP kinases N terminal domain LA08_11375 PF08544 GHMP kinases C terminal LA08_11390 PF00291 Pyridoxal-phosphate dependent enzyme LA08_11390 PF14821 Threonine synthase N terminus LA08_11405 PF13393 Histidyl-tRNA synthetase LA08_11405 PF03129 Anticodon binding domain LA08_11425 PF01634 ATP phosphoribosyltransferase LA08_11425 PF08029 HisG, C-terminal domain LA08_11430 PF00815 Histidinol dehydrogenase LA08_11435 PF00155 Aminotransferase class I and II LA08_11440 PF00475 Imidazoleglycerol-phosphate dehydratase LA08_11445 PF00117 Glutamine amidotransferase class-I LA08_11450 PF00977 Histidine biosynthesis protein LA08_11455 PF00977 Histidine biosynthesis protein LA08_11460 PF01502 Phosphoribosyl-AMP cyclohydrolase LA08_11460 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LA08_11470 PF03377 TAL effector repeat LA08_11485 PF03377 TAL effector repeat LA08_11500 PF02810 SEC-C motif LA08_11500 PF07516 SecA Wing and Scaffold domain LA08_11500 PF01043 SecA preprotein cross-linking domain LA08_11500 PF07517 SecA DEAD-like domain LA08_11540 PF02303 Helix-destabilising protein LA08_11620 PF03377 TAL effector repeat LA08_11635 PF03377 TAL effector repeat LA08_11655 PF03377 TAL effector repeat LA08_11665 PF00665 Integrase core domain LA08_11665 PF13333 Integrase core domain LA08_11665 PF13276 HTH-like domain LA08_11680 PF05598 Transposase domain (DUF772) LA08_11680 PF01609 Transposase DDE domain LA08_11705 PF00872 Transposase, Mutator family LA08_11715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA08_11735 PF01066 CDP-alcohol phosphatidyltransferase LA08_11740 PF08459 UvrC Helix-hairpin-helix N-terminal LA08_11740 PF02151 UvrB/uvrC motif LA08_11740 PF01541 GIY-YIG catalytic domain LA08_11750 PF01451 Low molecular weight phosphotyrosine protein phosphatase LA08_11755 PF02348 Cytidylyltransferase LA08_11760 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LA08_11765 PF00005 ABC transporter LA08_11765 PF00664 ABC transporter transmembrane region LA08_11770 PF02472 Biopolymer transport protein ExbD/TolR LA08_11775 PF01618 MotA/TolQ/ExbB proton channel family LA08_11780 PF00753 Metallo-beta-lactamase superfamily LA08_11780 PF03772 Competence protein LA08_11800 PF00005 ABC transporter LA08_11805 PF12704 MacB-like periplasmic core domain LA08_11805 PF02687 FtsX-like permease family LA08_11815 PF03937 Flavinator of succinate dehydrogenase LA08_11820 PF13085 2Fe-2S iron-sulfur cluster binding domain LA08_11830 PF02910 Fumarate reductase flavoprotein C-term LA08_11830 PF00890 FAD binding domain LA08_11835 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA08_11840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LA08_11850 PF01571 Aminomethyltransferase folate-binding domain LA08_11860 PF00005 ABC transporter LA08_11860 PF17912 MalK OB fold domain LA08_11865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LA08_11865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LA08_11870 PF02685 Glucokinase LA08_11875 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LA08_11880 PF00920 Dehydratase family LA08_11885 PF01081 KDPG and KHG aldolase LA08_11915 PF00672 HAMP domain LA08_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_11915 PF00512 His Kinase A (phospho-acceptor) domain LA08_11915 PF01627 Hpt domain LA08_11915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA08_11915 PF00072 Response regulator receiver domain LA08_11945 PF00990 Diguanylate cyclase, GGDEF domain LA08_11945 PF08448 PAS fold LA08_11965 PF02253 Phospholipase A1 LA08_11985 PF05681 Fumarate hydratase (Fumerase) LA08_11985 PF05683 Fumarase C-terminus LA08_11990 PF00005 ABC transporter LA08_11995 PF00970 Oxidoreductase FAD-binding domain LA08_11995 PF00175 Oxidoreductase NAD-binding domain LA08_12000 PF00255 Glutathione peroxidase LA08_12030 PF08281 Sigma-70, region 4 LA08_12030 PF04542 Sigma-70 region 2 LA08_12040 PF12802 MarR family LA08_12075 PF01915 Glycosyl hydrolase family 3 C-terminal domain LA08_12075 PF14310 Fibronectin type III-like domain LA08_12075 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_12090 PF00990 Diguanylate cyclase, GGDEF domain LA08_12090 PF00563 EAL domain LA08_12090 PF00360 Phytochrome region LA08_12090 PF01590 GAF domain LA08_12100 PF00474 Sodium:solute symporter family LA08_12110 PF14310 Fibronectin type III-like domain LA08_12110 PF01915 Glycosyl hydrolase family 3 C-terminal domain LA08_12110 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_12135 PF00342 Phosphoglucose isomerase LA08_12140 PF02261 Aspartate decarboxylase LA08_12145 PF02569 Pantoate-beta-alanine ligase LA08_12150 PF02548 Ketopantoate hydroxymethyltransferase LA08_12155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA08_12160 PF12626 Polymerase A arginine-rich C-terminus LA08_12160 PF12627 Probable RNA and SrmB- binding site of polymerase A LA08_12160 PF01743 Poly A polymerase head domain LA08_12170 PF02649 Type I GTP cyclohydrolase folE2 LA08_12175 PF01520 N-acetylmuramoyl-L-alanine amidase LA08_12190 PF05598 Transposase domain (DUF772) LA08_12195 PF00082 Subtilase family LA08_12195 PF03797 Autotransporter beta-domain LA08_12205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_12210 PF00873 AcrB/AcrD/AcrF family LA08_12215 PF02321 Outer membrane efflux protein LA08_12220 PF00072 Response regulator receiver domain LA08_12220 PF08448 PAS fold LA08_12220 PF00512 His Kinase A (phospho-acceptor) domain LA08_12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_12220 PF13426 PAS domain LA08_12225 PF00072 Response regulator receiver domain LA08_12225 PF00196 Bacterial regulatory proteins, luxR family LA08_12230 PF12951 Passenger-associated-transport-repeat LA08_12265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LA08_12270 PF01842 ACT domain LA08_12270 PF01817 Chorismate mutase type II LA08_12270 PF00800 Prephenate dehydratase LA08_12275 PF00266 Aminotransferase class-V LA08_12280 PF00174 Oxidoreductase molybdopterin binding domain LA08_12290 PF01794 Ferric reductase like transmembrane component LA08_12315 PF07702 UTRA domain LA08_12315 PF00392 Bacterial regulatory proteins, gntR family LA08_12325 PF07969 Amidohydrolase family LA08_12330 PF00221 Aromatic amino acid lyase LA08_12340 PF17391 Urocanase N-terminal domain LA08_12340 PF17392 Urocanase C-terminal domain LA08_12340 PF01175 Urocanase Rossmann-like domain LA08_12360 PF00521 DNA gyrase/topoisomerase IV, subunit A LA08_12360 PF03989 DNA gyrase C-terminal domain, beta-propeller LA08_12365 PF01008 Initiation factor 2 subunit family LA08_12380 PF00152 tRNA synthetases class II (D, K and N) LA08_12385 PF03120 NAD-dependent DNA ligase OB-fold domain LA08_12385 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LA08_12385 PF12826 Helix-hairpin-helix motif LA08_12385 PF01653 NAD-dependent DNA ligase adenylation domain LA08_12385 PF00533 BRCA1 C Terminus (BRCT) domain LA08_12395 PF04354 ZipA, C-terminal FtsZ-binding domain LA08_12400 PF02463 RecF/RecN/SMC N terminal domain LA08_12405 PF01281 Ribosomal protein L9, N-terminal domain LA08_12405 PF03948 Ribosomal protein L9, C-terminal domain LA08_12410 PF01084 Ribosomal protein S18 LA08_12415 PF01250 Ribosomal protein S6 LA08_12420 PF01521 Iron-sulphur cluster biosynthesis LA08_12430 PF00152 tRNA synthetases class II (D, K and N) LA08_12430 PF01336 OB-fold nucleic acid binding domain LA08_12455 PF00484 Carbonic anhydrase LA08_12460 PF06052 3-hydroxyanthranilic acid dioxygenase LA08_12470 PF00266 Aminotransferase class-V LA08_12475 PF01494 FAD binding domain LA08_12480 PF08411 Exonuclease C-terminal LA08_12480 PF00929 Exonuclease LA08_12490 PF00248 Aldo/keto reductase family LA08_12505 PF01513 ATP-NAD kinase LA08_12515 PF01170 Putative RNA methylase family UPF0020 LA08_12515 PF10672 S-adenosylmethionine-dependent methyltransferase LA08_12515 PF02926 THUMP domain LA08_12555 PF00581 Rhodanese-like domain LA08_12560 PF00293 NUDIX domain LA08_12565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA08_12565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LA08_12570 PF00378 Enoyl-CoA hydratase/isomerase LA08_12580 PF10576 Iron-sulfur binding domain of endonuclease III LA08_12580 PF00633 Helix-hairpin-helix motif LA08_12580 PF00730 HhH-GPD superfamily base excision DNA repair protein LA08_12590 PF00484 Carbonic anhydrase LA08_12595 PF01609 Transposase DDE domain LA08_12595 PF05598 Transposase domain (DUF772) LA08_12630 PF12849 PBP superfamily domain LA08_12635 PF12849 PBP superfamily domain LA08_12640 PF00528 Binding-protein-dependent transport system inner membrane component LA08_12645 PF00528 Binding-protein-dependent transport system inner membrane component LA08_12650 PF00005 ABC transporter LA08_12655 PF01895 PhoU domain LA08_12665 PF00929 Exonuclease LA08_12680 PF00872 Transposase, Mutator family LA08_12710 PF13495 Phage integrase, N-terminal SAM-like domain LA08_12710 PF00589 Phage integrase family LA08_12715 PF07549 SecD/SecF GG Motif LA08_12715 PF02355 Protein export membrane protein LA08_12720 PF07549 SecD/SecF GG Motif LA08_12720 PF13721 SecD export protein N-terminal TM region LA08_12720 PF02355 Protein export membrane protein LA08_12725 PF02699 Preprotein translocase subunit LA08_12730 PF01702 Queuine tRNA-ribosyltransferase LA08_12735 PF02547 Queuosine biosynthesis protein LA08_12820 PF00037 4Fe-4S binding domain LA08_12835 PF01467 Cytidylyltransferase-like LA08_12845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_12845 PF00183 Hsp90 protein LA08_12860 PF00899 ThiF family LA08_12875 PF05598 Transposase domain (DUF772) LA08_12890 PF01609 Transposase DDE domain LA08_12890 PF05598 Transposase domain (DUF772) LA08_12900 PF05598 Transposase domain (DUF772) LA08_12900 PF01609 Transposase DDE domain LA08_12930 PF03454 MoeA C-terminal region (domain IV) LA08_12930 PF03453 MoeA N-terminal region (domain I and II) LA08_12930 PF00994 Probable molybdopterin binding domain LA08_12935 PF01926 50S ribosome-binding GTPase LA08_12935 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LA08_12940 PF01011 PQQ enzyme repeat LA08_12940 PF13360 PQQ-like domain LA08_12950 PF13464 Domain of unknown function (DUF4115) LA08_12960 PF04055 Radical SAM superfamily LA08_12965 PF00334 Nucleoside diphosphate kinase LA08_12975 PF00378 Enoyl-CoA hydratase/isomerase LA08_12975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LA08_12975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LA08_12980 PF02803 Thiolase, C-terminal domain LA08_12980 PF00108 Thiolase, N-terminal domain LA08_12985 PF00654 Voltage gated chloride channel LA08_12995 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LA08_13005 PF16193 AAA C-terminal domain LA08_13005 PF00004 ATPase family associated with various cellular activities (AAA) LA08_13005 PF12002 MgsA AAA+ ATPase C terminal LA08_13020 PF03548 Outer membrane lipoprotein carrier protein LolA LA08_13030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LA08_13030 PF17854 FtsK alpha domain LA08_13030 PF01580 FtsK/SpoIIIE family LA08_13030 PF09397 Ftsk gamma domain LA08_13035 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_13050 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LA08_13055 PF01176 Translation initiation factor 1A / IF-1 LA08_13060 PF02861 Clp amino terminal domain, pathogenicity island component LA08_13060 PF00004 ATPase family associated with various cellular activities (AAA) LA08_13060 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_13060 PF17871 AAA lid domain LA08_13060 PF07724 AAA domain (Cdc48 subfamily) LA08_13065 PF02617 ATP-dependent Clp protease adaptor protein ClpS LA08_13070 PF00293 NUDIX domain LA08_13080 PF04356 Protein of unknown function (DUF489) LA08_13085 PF00672 HAMP domain LA08_13085 PF12729 Four helix bundle sensory module for signal transduction LA08_13085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_13100 PF00990 Diguanylate cyclase, GGDEF domain LA08_13100 PF08447 PAS fold LA08_13100 PF00563 EAL domain LA08_13100 PF08448 PAS fold LA08_13105 PF07730 Histidine kinase LA08_13105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_13110 PF00990 Diguanylate cyclase, GGDEF domain LA08_13110 PF00563 EAL domain LA08_13110 PF03707 Bacterial signalling protein N terminal repeat LA08_13115 PF00512 His Kinase A (phospho-acceptor) domain LA08_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_13115 PF13426 PAS domain LA08_13115 PF00989 PAS fold LA08_13115 PF13188 PAS domain LA08_13135 PF01584 CheW-like domain LA08_13135 PF00072 Response regulator receiver domain LA08_13145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA08_13145 PF00460 Flagella basal body rod protein LA08_13150 PF03963 Flagellar hook capping protein - N-terminal region LA08_13155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA08_13155 PF00460 Flagella basal body rod protein LA08_13155 PF07559 Flagellar basal body protein FlaE LA08_13160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA08_13160 PF00460 Flagella basal body rod protein LA08_13170 PF00460 Flagella basal body rod protein LA08_13170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA08_13175 PF02107 Flagellar L-ring protein LA08_13180 PF02119 Flagellar P-ring protein LA08_13185 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LA08_13185 PF10135 Rod binding protein LA08_13190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LA08_13190 PF07196 Flagellin hook IN motif LA08_13200 PF00700 Bacterial flagellin C-terminal helical region LA08_13200 PF00669 Bacterial flagellin N-terminal helical region LA08_13205 PF02465 Flagellar hook-associated protein 2 N-terminus LA08_13205 PF07195 Flagellar hook-associated protein 2 C-terminus LA08_13205 PF07196 Flagellin hook IN motif LA08_13210 PF02561 Flagellar protein FliS LA08_13225 PF00196 Bacterial regulatory proteins, luxR family LA08_13225 PF00072 Response regulator receiver domain LA08_13230 PF04552 Sigma-54, DNA binding domain LA08_13230 PF00309 Sigma-54 factor, Activator interacting domain (AID) LA08_13230 PF04963 Sigma-54 factor, core binding domain LA08_13235 PF01339 CheB methylesterase LA08_13235 PF00072 Response regulator receiver domain LA08_13240 PF00158 Sigma-54 interaction domain LA08_13240 PF00072 Response regulator receiver domain LA08_13240 PF02954 Bacterial regulatory protein, Fis family LA08_13245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA08_13255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA08_13255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA08_13290 PF00534 Glycosyl transferases group 1 LA08_13290 PF00535 Glycosyl transferase family 2 LA08_13300 PF02049 Flagellar hook-basal body complex protein FliE LA08_13305 PF01514 Secretory protein of YscJ/FliF family LA08_13305 PF08345 Flagellar M-ring protein C-terminal LA08_13310 PF01706 FliG C-terminal domain LA08_13310 PF14841 FliG middle domain LA08_13310 PF14842 FliG N-terminal domain LA08_13320 PF18269 T3SS EscN ATPase C-terminal domain LA08_13320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA08_13340 PF02154 Flagellar motor switch protein FliM LA08_13340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA08_13345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LA08_13350 PF04347 Flagellar biosynthesis protein, FliO LA08_13355 PF00813 FliP family LA08_13365 PF01313 Bacterial export proteins, family 3 LA08_13370 PF01311 Bacterial export proteins, family 1 LA08_13375 PF00563 EAL domain LA08_13375 PF03707 Bacterial signalling protein N terminal repeat LA08_13375 PF13188 PAS domain LA08_13375 PF00990 Diguanylate cyclase, GGDEF domain LA08_13380 PF00990 Diguanylate cyclase, GGDEF domain LA08_13380 PF03707 Bacterial signalling protein N terminal repeat LA08_13380 PF13188 PAS domain LA08_13380 PF00563 EAL domain LA08_13385 PF00563 EAL domain LA08_13385 PF03707 Bacterial signalling protein N terminal repeat LA08_13385 PF00990 Diguanylate cyclase, GGDEF domain LA08_13390 PF01312 FlhB HrpN YscU SpaS Family LA08_13395 PF00771 FHIPEP family LA08_13400 PF00448 SRP54-type protein, GTPase domain LA08_13405 PF10609 NUBPL iron-transfer P-loop NTPase LA08_13410 PF04542 Sigma-70 region 2 LA08_13410 PF04539 Sigma-70 region 3 LA08_13410 PF04545 Sigma-70, region 4 LA08_13415 PF00072 Response regulator receiver domain LA08_13420 PF04344 Chemotaxis phosphatase, CheZ LA08_13425 PF07194 P2 response regulator binding domain LA08_13425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_13425 PF02895 Signal transducing histidine kinase, homodimeric domain LA08_13425 PF01584 CheW-like domain LA08_13425 PF01627 Hpt domain LA08_13465 PF01609 Transposase DDE domain LA08_13465 PF05598 Transposase domain (DUF772) LA08_13500 PF00034 Cytochrome c LA08_13555 PF00664 ABC transporter transmembrane region LA08_13555 PF00005 ABC transporter LA08_13560 PF00664 ABC transporter transmembrane region LA08_13560 PF00005 ABC transporter LA08_13585 PF01654 Cytochrome bd terminal oxidase subunit I LA08_13615 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LA08_13615 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LA08_13620 PF00171 Aldehyde dehydrogenase family LA08_13625 PF00696 Amino acid kinase family LA08_13625 PF01472 PUA domain LA08_13640 PF00206 Lyase LA08_13645 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA08_13655 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LA08_13655 PF00696 Amino acid kinase family LA08_13660 PF07687 Peptidase dimerisation domain LA08_13660 PF01546 Peptidase family M20/M25/M40 LA08_13670 PF00764 Arginosuccinate synthase LA08_13675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LA08_13675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LA08_13685 PF09190 DALR domain LA08_13685 PF01406 tRNA synthetases class I (C) catalytic domain LA08_13690 PF02657 Fe-S metabolism associated domain LA08_13705 PF01258 Prokaryotic dksA/traR C4-type zinc finger LA08_13710 PF01809 Putative membrane protein insertion efficiency factor LA08_13715 PF01979 Amidohydrolase family LA08_13720 PF08460 Bacterial SH3 domain LA08_13720 PF01551 Peptidase family M23 LA08_13755 PF01609 Transposase DDE domain LA08_13755 PF05598 Transposase domain (DUF772) LA08_13770 PF01095 Pectinesterase LA08_13785 PF00295 Glycosyl hydrolases family 28 LA08_13795 PF13419 Haloacid dehalogenase-like hydrolase LA08_13805 PF01979 Amidohydrolase family LA08_13815 PF09285 Elongation factor P, C-terminal LA08_13815 PF01132 Elongation factor P (EF-P) OB domain LA08_13815 PF08207 Elongation factor P (EF-P) KOW-like domain LA08_13820 PF04055 Radical SAM superfamily LA08_13825 PF03707 Bacterial signalling protein N terminal repeat LA08_13825 PF13188 PAS domain LA08_13825 PF00990 Diguanylate cyclase, GGDEF domain LA08_13825 PF00563 EAL domain LA08_13835 PF00588 SpoU rRNA Methylase family LA08_13840 PF00459 Inositol monophosphatase family LA08_13845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LA08_13845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LA08_13850 PF00545 ribonuclease LA08_13875 PF00270 DEAD/DEAH box helicase LA08_13875 PF00271 Helicase conserved C-terminal domain LA08_13875 PF03880 DbpA RNA binding domain LA08_13880 PF00156 Phosphoribosyl transferase domain LA08_13885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LA08_13895 PF02798 Glutathione S-transferase, N-terminal domain LA08_13895 PF14497 Glutathione S-transferase, C-terminal domain LA08_13900 PF00313 'Cold-shock' DNA-binding domain LA08_13905 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LA08_13910 PF07152 YaeQ protein LA08_13920 PF00072 Response regulator receiver domain LA08_13920 PF00563 EAL domain LA08_13920 PF00990 Diguanylate cyclase, GGDEF domain LA08_13925 PF01435 Peptidase family M48 LA08_13930 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA08_13935 PF00106 short chain dehydrogenase LA08_13940 PF07879 PHB/PHA accumulation regulator DNA-binding domain LA08_13940 PF05233 PHB accumulation regulatory domain LA08_13960 PF01119 DNA mismatch repair protein, C-terminal domain LA08_13960 PF08676 MutL C terminal dimerisation domain LA08_13965 PF01520 N-acetylmuramoyl-L-alanine amidase LA08_13965 PF11741 AMIN domain LA08_13970 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LA08_13975 PF01256 Carbohydrate kinase LA08_13975 PF03853 YjeF-related protein N-terminus LA08_13980 PF08331 Domain of unknown function (DUF1730) LA08_13990 PF13742 OB-fold nucleic acid binding domain LA08_13990 PF02601 Exonuclease VII, large subunit LA08_14005 PF03781 Sulfatase-modifying factor enzyme 1 LA08_14020 PF00570 HRDC domain LA08_14020 PF01612 3'-5' exonuclease LA08_14025 PF04679 ATP dependent DNA ligase C terminal region LA08_14025 PF01068 ATP dependent DNA ligase domain LA08_14025 PF13298 DNA polymerase Ligase (LigD) LA08_14075 PF14850 DNA-binding domain of Proline dehydrogenase LA08_14075 PF00171 Aldehyde dehydrogenase family LA08_14075 PF01619 Proline dehydrogenase LA08_14075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LA08_14090 PF00872 Transposase, Mutator family LA08_14135 PF04386 Stringent starvation protein B LA08_14140 PF02798 Glutathione S-transferase, N-terminal domain LA08_14140 PF00043 Glutathione S-transferase, C-terminal domain LA08_14145 PF02167 Cytochrome C1 family LA08_14150 PF00033 Cytochrome b/b6/petB LA08_14150 PF00032 Cytochrome b(C-terminal)/b6/petD LA08_14155 PF00355 Rieske [2Fe-2S] domain LA08_14155 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LA08_14165 PF01464 Transglycosylase SLT domain LA08_14185 PF00919 Uncharacterized protein family UPF0004 LA08_14185 PF04055 Radical SAM superfamily LA08_14185 PF01938 TRAM domain LA08_14190 PF02562 PhoH-like protein LA08_14200 PF02130 Uncharacterized protein family UPF0054 LA08_14210 PF03471 Transporter associated domain LA08_14210 PF00571 CBS domain LA08_14225 PF00171 Aldehyde dehydrogenase family LA08_14235 PF00528 Binding-protein-dependent transport system inner membrane component LA08_14240 PF00528 Binding-protein-dependent transport system inner membrane component LA08_14245 PF00005 ABC transporter LA08_14245 PF08402 TOBE domain LA08_14250 PF02321 Outer membrane efflux protein LA08_14255 PF07690 Major Facilitator Superfamily LA08_14260 PF13533 Biotin-lipoyl like LA08_14275 PF00120 Glutamine synthetase, catalytic domain LA08_14285 PF00120 Glutamine synthetase, catalytic domain LA08_14290 PF01266 FAD dependent oxidoreductase LA08_14295 PF00990 Diguanylate cyclase, GGDEF domain LA08_14295 PF00072 Response regulator receiver domain LA08_14300 PF07690 Major Facilitator Superfamily LA08_14300 PF00083 Sugar (and other) transporter LA08_14310 PF00384 Molybdopterin oxidoreductase LA08_14315 PF02634 FdhD/NarQ family LA08_14320 PF07690 Major Facilitator Superfamily LA08_14340 PF00202 Aminotransferase class-III LA08_14345 PF00005 ABC transporter LA08_14355 PF04286 Protein of unknown function (DUF445) LA08_14360 PF00512 His Kinase A (phospho-acceptor) domain LA08_14360 PF00672 HAMP domain LA08_14360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_14360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LA08_14360 PF00072 Response regulator receiver domain LA08_14360 PF01627 Hpt domain LA08_14365 PF00072 Response regulator receiver domain LA08_14370 PF05598 Transposase domain (DUF772) LA08_14370 PF01609 Transposase DDE domain LA08_14380 PF05088 Bacterial NAD-glutamate dehydrogenase LA08_14390 PF00529 HlyD membrane-fusion protein of T1SS LA08_14390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_14395 PF00873 AcrB/AcrD/AcrF family LA08_14415 PF00356 Bacterial regulatory proteins, lacI family LA08_14420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LA08_14420 PF00381 PTS HPr component phosphorylation site LA08_14420 PF05524 PEP-utilising enzyme, N-terminal LA08_14420 PF02896 PEP-utilising enzyme, TIM barrel domain LA08_14420 PF00391 PEP-utilising enzyme, mobile domain LA08_14425 PF00294 pfkB family carbohydrate kinase LA08_14430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LA08_14445 PF01609 Transposase DDE domain LA08_14445 PF05598 Transposase domain (DUF772) LA08_14455 PF05598 Transposase domain (DUF772) LA08_14455 PF01609 Transposase DDE domain LA08_14500 PF16671 Actin cross-linking domain LA08_14500 PF04717 Type VI secretion system, phage-baseplate injector LA08_14520 PF16671 Actin cross-linking domain LA08_14520 PF04717 Type VI secretion system, phage-baseplate injector LA08_14580 PF01609 Transposase DDE domain LA08_14580 PF05598 Transposase domain (DUF772) LA08_14610 PF00593 TonB dependent receptor LA08_14610 PF07715 TonB-dependent Receptor Plug Domain LA08_14620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LA08_14620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LA08_14630 PF00593 TonB dependent receptor LA08_14630 PF07715 TonB-dependent Receptor Plug Domain LA08_14640 PF01618 MotA/TolQ/ExbB proton channel family LA08_14645 PF13677 Membrane MotB of proton-channel complex MotA/MotB LA08_14645 PF00691 OmpA family LA08_14650 PF13614 AAA domain LA08_14655 PF01584 CheW-like domain LA08_14665 PF00072 Response regulator receiver domain LA08_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_14670 PF02895 Signal transducing histidine kinase, homodimeric domain LA08_14670 PF01627 Hpt domain LA08_14670 PF01584 CheW-like domain LA08_14670 PF09078 CheY binding LA08_14690 PF00672 HAMP domain LA08_14690 PF02203 Tar ligand binding domain homologue LA08_14690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14705 PF02203 Tar ligand binding domain homologue LA08_14705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14705 PF00672 HAMP domain LA08_14715 PF02203 Tar ligand binding domain homologue LA08_14715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14715 PF00672 HAMP domain LA08_14725 PF00672 HAMP domain LA08_14725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14725 PF02203 Tar ligand binding domain homologue LA08_14730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14730 PF00672 HAMP domain LA08_14730 PF02203 Tar ligand binding domain homologue LA08_14735 PF02203 Tar ligand binding domain homologue LA08_14735 PF00672 HAMP domain LA08_14735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14740 PF00672 HAMP domain LA08_14740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14740 PF02203 Tar ligand binding domain homologue LA08_14755 PF07238 PilZ domain LA08_14755 PF07317 Flagellar regulator YcgR LA08_14760 PF01584 CheW-like domain LA08_14785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LA08_14785 PF02203 Tar ligand binding domain homologue LA08_14785 PF00672 HAMP domain LA08_14790 PF01739 CheR methyltransferase, SAM binding domain LA08_14790 PF03705 CheR methyltransferase, all-alpha domain LA08_14795 PF03975 CheD chemotactic sensory transduction LA08_14800 PF00072 Response regulator receiver domain LA08_14800 PF01339 CheB methylesterase LA08_14805 PF00990 Diguanylate cyclase, GGDEF domain LA08_14805 PF00563 EAL domain LA08_14805 PF03707 Bacterial signalling protein N terminal repeat LA08_14820 PF00561 alpha/beta hydrolase fold LA08_14825 PF06434 Aconitate hydratase 2 N-terminus LA08_14825 PF11791 Aconitate B N-terminal domain LA08_14825 PF00330 Aconitase family (aconitate hydratase) LA08_14840 PF00330 Aconitase family (aconitate hydratase) LA08_14840 PF00694 Aconitase C-terminal domain LA08_14850 PF13193 AMP-binding enzyme C-terminal domain LA08_14850 PF00501 AMP-binding enzyme LA08_14855 PF00378 Enoyl-CoA hydratase/isomerase LA08_14860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_14860 PF01627 Hpt domain LA08_14860 PF00072 Response regulator receiver domain LA08_14860 PF00512 His Kinase A (phospho-acceptor) domain LA08_14870 PF00072 Response regulator receiver domain LA08_14875 PF01336 OB-fold nucleic acid binding domain LA08_14875 PF00152 tRNA synthetases class II (D, K and N) LA08_14900 PF13542 Helix-turn-helix domain of transposase family ISL3 LA08_14900 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 LA08_14900 PF01610 Transposase LA08_14930 PF01368 DHH family LA08_14930 PF02272 DHHA1 domain LA08_14930 PF17768 RecJ OB domain LA08_14940 PF03449 Transcription elongation factor, N-terminal LA08_14940 PF01272 Transcription elongation factor, GreA/GreB, C-term LA08_14945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA08_14945 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LA08_14945 PF02142 MGS-like domain LA08_14955 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LA08_14955 PF00117 Glutamine amidotransferase class-I LA08_14960 PF05173 Dihydrodipicolinate reductase, C-terminus LA08_14960 PF01113 Dihydrodipicolinate reductase, N-terminus LA08_14970 PF03473 MOSC domain LA08_14970 PF03475 3-alpha domain LA08_14975 PF00155 Aminotransferase class I and II LA08_14995 PF02421 Ferrous iron transport protein B LA08_14995 PF07664 Ferrous iron transport protein B C terminus LA08_14995 PF07670 Nucleoside recognition LA08_15005 PF00378 Enoyl-CoA hydratase/isomerase LA08_15015 PF00682 HMGL-like LA08_15020 PF00106 short chain dehydrogenase LA08_15025 PF08207 Elongation factor P (EF-P) KOW-like domain LA08_15025 PF01132 Elongation factor P (EF-P) OB domain LA08_15025 PF09285 Elongation factor P, C-terminal LA08_15045 PF00083 Sugar (and other) transporter LA08_15055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LA08_15055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LA08_15065 PF01055 Glycosyl hydrolases family 31 LA08_15065 PF16338 Domain of unknown function (DUF4968) LA08_15065 PF17137 Domain of unknown function (DUF5110) LA08_15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_15075 PF03466 LysR substrate binding domain LA08_15080 PF01081 KDPG and KHG aldolase LA08_15085 PF13378 Enolase C-terminal domain-like LA08_15085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LA08_15090 PF08450 SMP-30/Gluconolactonase/LRE-like region LA08_15095 PF05035 2-keto-3-deoxy-galactonokinase LA08_15100 PF11953 Domain of unknown function (DUF3470) LA08_15100 PF00037 4Fe-4S binding domain LA08_15110 PF00701 Dihydrodipicolinate synthetase family LA08_15125 PF00578 AhpC/TSA family LA08_15130 PF02562 PhoH-like protein LA08_15130 PF13638 PIN domain LA08_15140 PF08543 Phosphomethylpyrimidine kinase LA08_15170 PF03466 LysR substrate binding domain LA08_15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_15175 PF17954 Quercetinase C-terminal cupin domain LA08_15175 PF02678 Pirin LA08_15200 PF03796 DnaB-like helicase C terminal domain LA08_15200 PF00772 DnaB-like helicase N terminal domain LA08_15225 PF02599 Global regulator protein family LA08_15230 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA08_15230 PF01411 tRNA synthetases class II (A) LA08_15230 PF02272 DHHA1 domain LA08_15235 PF02631 RecX family LA08_15245 PF00154 recA bacterial DNA recombination protein LA08_15250 PF00717 Peptidase S24-like LA08_15250 PF01726 LexA DNA binding domain LA08_15255 PF03109 ABC1 family LA08_15260 PF02464 Competence-damaged protein LA08_15265 PF16360 GTP-binding GTPase Middle Region LA08_15265 PF13167 GTP-binding GTPase N-terminal LA08_15265 PF01926 50S ribosome-binding GTPase LA08_15270 PF17209 Hfq protein LA08_15280 PF00809 Pterin binding enzyme LA08_15285 PF06480 FtsH Extracellular LA08_15285 PF00004 ATPase family associated with various cellular activities (AAA) LA08_15285 PF17862 AAA+ lid domain LA08_15285 PF01434 Peptidase family M41 LA08_15290 PF01728 FtsJ-like methyltransferase LA08_15295 PF01985 CRS1 / YhbY (CRM) domain LA08_15305 PF01476 LysM domain LA08_15305 PF01551 Peptidase family M23 LA08_15310 PF09335 SNARE associated Golgi protein LA08_15320 PF01975 Survival protein SurE LA08_15325 PF01713 Smr domain LA08_15335 PF01142 tRNA pseudouridine synthase D (TruD) LA08_15340 PF02542 YgbB family LA08_15350 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LA08_15355 PF04977 Septum formation initiator LA08_15360 PF00113 Enolase, C-terminal TIM barrel domain LA08_15360 PF03952 Enolase, N-terminal domain LA08_15370 PF00793 DAHP synthetase I family LA08_15375 PF06418 CTP synthase N-terminus LA08_15375 PF00117 Glutamine amidotransferase class-I LA08_15385 PF01751 Toprim domain LA08_15385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_15385 PF00986 DNA gyrase B subunit, carboxyl terminus LA08_15385 PF00204 DNA gyrase B LA08_15400 PF02698 DUF218 domain LA08_15405 PF01384 Phosphate transporter family LA08_15420 PF00571 CBS domain LA08_15420 PF03471 Transporter associated domain LA08_15420 PF01595 Cyclin M transmembrane N-terminal domain LA08_15435 PF00296 Luciferase-like monooxygenase LA08_15455 PF07690 Major Facilitator Superfamily LA08_15465 PF00664 ABC transporter transmembrane region LA08_15465 PF00005 ABC transporter LA08_15470 PF00005 ABC transporter LA08_15490 PF13579 Glycosyl transferase 4-like domain LA08_15490 PF00534 Glycosyl transferases group 1 LA08_15510 PF08241 Methyltransferase domain LA08_15525 PF00535 Glycosyl transferase family 2 LA08_15530 PF01943 Polysaccharide biosynthesis protein LA08_15535 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LA08_15555 PF05523 WxcM-like, C-terminal LA08_15570 PF00034 Cytochrome c LA08_15580 PF04542 Sigma-70 region 2 LA08_15580 PF08281 Sigma-70, region 4 LA08_15590 PF00082 Subtilase family LA08_15595 PF01578 Cytochrome C assembly protein LA08_15600 PF04995 Heme exporter protein D (CcmD) LA08_15605 PF03100 CcmE LA08_15610 PF01578 Cytochrome C assembly protein LA08_15610 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LA08_15615 PF08534 Redoxin LA08_15620 PF03918 Cytochrome C biogenesis protein LA08_15630 PF03377 TAL effector repeat LA08_15650 PF00873 AcrB/AcrD/AcrF family LA08_15655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_15655 PF00529 HlyD membrane-fusion protein of T1SS LA08_15705 PF00486 Transcriptional regulatory protein, C terminal LA08_15705 PF00072 Response regulator receiver domain LA08_15710 PF03150 Di-haem cytochrome c peroxidase LA08_15710 PF00034 Cytochrome c LA08_15715 PF00512 His Kinase A (phospho-acceptor) domain LA08_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_15720 PF03466 LysR substrate binding domain LA08_15745 PF00069 Protein kinase domain LA08_15785 PF16671 Actin cross-linking domain LA08_15785 PF04717 Type VI secretion system, phage-baseplate injector LA08_15805 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_15805 PF17871 AAA lid domain LA08_15805 PF07724 AAA domain (Cdc48 subfamily) LA08_15805 PF00004 ATPase family associated with various cellular activities (AAA) LA08_15830 PF05638 Type VI secretion system effector, Hcp LA08_15860 PF01609 Transposase DDE domain LA08_15860 PF05598 Transposase domain (DUF772) LA08_15880 PF05598 Transposase domain (DUF772) LA08_15880 PF01609 Transposase DDE domain LA08_15925 PF01106 NifU-like domain LA08_15930 PF01329 Pterin 4 alpha carbinolamine dehydratase LA08_15940 PF02535 ZIP Zinc transporter LA08_15945 PF02535 ZIP Zinc transporter LA08_15950 PF11737 Protein of unknown function (DUF3300) LA08_15955 PF00849 RNA pseudouridylate synthase LA08_15955 PF01479 S4 domain LA08_15960 PF00575 S1 RNA binding domain LA08_15960 PF10150 Ribonuclease E/G family LA08_15960 PF12111 Polyribonucleotide phosphorylase C terminal LA08_15985 PF05598 Transposase domain (DUF772) LA08_15985 PF01609 Transposase DDE domain LA08_15995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA08_16005 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LA08_16005 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LA08_16005 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LA08_16015 PF01648 4'-phosphopantetheinyl transferase superfamily LA08_16015 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LA08_16045 PF05598 Transposase domain (DUF772) LA08_16045 PF01609 Transposase DDE domain LA08_16050 PF01609 Transposase DDE domain LA08_16050 PF05598 Transposase domain (DUF772) LA08_16080 PF10414 Sirohaem synthase dimerisation region LA08_16080 PF14824 Sirohaem biosynthesis protein central LA08_16080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA08_16105 PF12804 MobA-like NTP transferase domain LA08_16110 PF03453 MoeA N-terminal region (domain I and II) LA08_16110 PF03454 MoeA C-terminal region (domain IV) LA08_16110 PF00994 Probable molybdopterin binding domain LA08_16180 PF00872 Transposase, Mutator family LA08_16185 PF00593 TonB dependent receptor LA08_16185 PF07715 TonB-dependent Receptor Plug Domain LA08_16210 PF04616 Glycosyl hydrolases family 43 LA08_16215 PF07532 Bacterial Ig-like domain (group 4) LA08_16220 PF07715 TonB-dependent Receptor Plug Domain LA08_16220 PF00593 TonB dependent receptor LA08_16230 PF00082 Subtilase family LA08_16230 PF09286 Pro-kumamolisin, activation domain LA08_16270 PF13520 Amino acid permease LA08_16285 PF00557 Metallopeptidase family M24 LA08_16285 PF01321 Creatinase/Prolidase N-terminal domain LA08_16290 PF00171 Aldehyde dehydrogenase family LA08_16295 PF00701 Dihydrodipicolinate synthetase family LA08_16300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_16300 PF04324 BFD-like [2Fe-2S] binding domain LA08_16310 PF01266 FAD dependent oxidoreductase LA08_16315 PF05544 Proline racemase LA08_16325 PF02881 SRP54-type protein, helical bundle domain LA08_16325 PF00448 SRP54-type protein, GTPase domain LA08_16340 PF00633 Helix-hairpin-helix motif LA08_16340 PF14815 NUDIX domain LA08_16340 PF00730 HhH-GPD superfamily base excision DNA repair protein LA08_16345 PF04362 Bacterial Fe(2+) trafficking LA08_16350 PF13426 PAS domain LA08_16350 PF00072 Response regulator receiver domain LA08_16350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_16440 PF08212 Lipocalin-like domain LA08_16470 PF03808 Glycosyl transferase WecB/TagA/CpsF family LA08_16485 PF14667 Polysaccharide biosynthesis C-terminal domain LA08_16495 PF13439 Glycosyltransferase Family 4 LA08_16495 PF00534 Glycosyl transferases group 1 LA08_16515 PF02397 Bacterial sugar transferase LA08_16535 PF13411 MerR HTH family regulatory protein LA08_16540 PF00216 Bacterial DNA-binding protein LA08_16545 PF03147 Ferredoxin-fold anticodon binding domain LA08_16545 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LA08_16545 PF01588 Putative tRNA binding domain LA08_16545 PF03484 tRNA synthetase B5 domain LA08_16545 PF03483 B3/4 domain LA08_16550 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LA08_16550 PF01409 tRNA synthetases class II core domain (F) LA08_16555 PF00453 Ribosomal protein L20 LA08_16560 PF01632 Ribosomal protein L35 LA08_16565 PF05198 Translation initiation factor IF-3, N-terminal domain LA08_16565 PF00707 Translation initiation factor IF-3, C-terminal domain LA08_16570 PF02824 TGS domain LA08_16570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LA08_16570 PF03129 Anticodon binding domain LA08_16570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LA08_16600 PF02151 UvrB/uvrC motif LA08_16600 PF00271 Helicase conserved C-terminal domain LA08_16600 PF17757 UvrB interaction domain LA08_16600 PF04851 Type III restriction enzyme, res subunit LA08_16600 PF12344 Ultra-violet resistance protein B LA08_16605 PF00114 Pilin (bacterial filament) LA08_16605 PF07963 Prokaryotic N-terminal methylation motif LA08_16615 PF07963 Prokaryotic N-terminal methylation motif LA08_16615 PF00114 Pilin (bacterial filament) LA08_16620 PF05567 Neisseria PilC beta-propeller domain LA08_16640 PF07963 Prokaryotic N-terminal methylation motif LA08_16640 PF12019 Type II transport protein GspH LA08_16645 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LA08_16645 PF03641 Possible lysine decarboxylase LA08_16645 PF11892 Domain of unknown function (DUF3412) LA08_16650 PF00593 TonB dependent receptor LA08_16660 PF01914 MarC family integral membrane protein LA08_16670 PF00462 Glutaredoxin LA08_16675 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LA08_16675 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LA08_16680 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LA08_16680 PF02222 ATP-grasp domain LA08_16685 PF00731 AIR carboxylase LA08_16695 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LA08_16695 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LA08_16705 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LA08_16705 PF01138 3' exoribonuclease family, domain 1 LA08_16705 PF03725 3' exoribonuclease family, domain 2 LA08_16705 PF00575 S1 RNA binding domain LA08_16705 PF00013 KH domain LA08_16710 PF00312 Ribosomal protein S15 LA08_16715 PF09157 Pseudouridine synthase II TruB, C-terminal LA08_16715 PF01509 TruB family pseudouridylate synthase (N terminal domain) LA08_16715 PF16198 tRNA pseudouridylate synthase B C-terminal domain LA08_16720 PF02033 Ribosome-binding factor A LA08_16725 PF00009 Elongation factor Tu GTP binding domain LA08_16725 PF11987 Translation-initiation factor 2 LA08_16725 PF08364 Bacterial translation initiation factor IF-2 associated region LA08_16725 PF04760 Translation initiation factor IF-2, N-terminal region LA08_16730 PF00575 S1 RNA binding domain LA08_16730 PF08529 NusA N-terminal domain LA08_16730 PF13184 NusA-like KH domain LA08_16735 PF02576 RimP N-terminal domain LA08_16735 PF17384 RimP C-terminal SH3 domain LA08_16745 PF00361 Proton-conducting membrane transporter LA08_16750 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LA08_16750 PF00361 Proton-conducting membrane transporter LA08_16755 PF00361 Proton-conducting membrane transporter LA08_16755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LA08_16760 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LA08_16765 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LA08_16770 PF12838 4Fe-4S dicluster domain LA08_16775 PF00146 NADH dehydrogenase LA08_16780 PF00384 Molybdopterin oxidoreductase LA08_16780 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LA08_16780 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LA08_16785 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LA08_16785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LA08_16785 PF10531 SLBB domain LA08_16795 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LA08_16800 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LA08_16805 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LA08_16810 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LA08_16825 PF00121 Triosephosphate isomerase LA08_16860 PF03707 Bacterial signalling protein N terminal repeat LA08_16860 PF00990 Diguanylate cyclase, GGDEF domain LA08_16860 PF00563 EAL domain LA08_16875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LA08_16875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LA08_16875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LA08_16875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LA08_16880 PF17848 Acetyl-coA carboxylase zinc finger domain LA08_16880 PF01039 Carboxyl transferase domain LA08_16885 PF00290 Tryptophan synthase alpha chain LA08_16895 PF00291 Pyridoxal-phosphate dependent enzyme LA08_16900 PF03466 LysR substrate binding domain LA08_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_16905 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LA08_16910 PF01416 tRNA pseudouridine synthase LA08_16930 PF02774 Semialdehyde dehydrogenase, dimerisation domain LA08_16930 PF01118 Semialdehyde dehydrogenase, NAD binding domain LA08_16935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA08_16935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA08_16940 PF01264 Chorismate synthase LA08_16945 PF05175 Methyltransferase small domain LA08_16950 PF02630 SCO1/SenC LA08_16955 PF02666 Phosphatidylserine decarboxylase LA08_17000 PF03449 Transcription elongation factor, N-terminal LA08_17000 PF01272 Transcription elongation factor, GreA/GreB, C-term LA08_17005 PF18693 TRAM domain LA08_17005 PF04055 Radical SAM superfamily LA08_17005 PF00919 Uncharacterized protein family UPF0004 LA08_17010 PF01738 Dienelactone hydrolase family LA08_17035 PF00692 dUTPase LA08_17040 PF10609 NUBPL iron-transfer P-loop NTPase LA08_17085 PF01266 FAD dependent oxidoreductase LA08_17090 PF04235 Protein of unknown function (DUF418) LA08_17095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LA08_17100 PF00877 NlpC/P60 family LA08_17105 PF00877 NlpC/P60 family LA08_17120 PF00375 Sodium:dicarboxylate symporter family LA08_17125 PF00245 Alkaline phosphatase LA08_17130 PF09179 TilS substrate binding domain LA08_17130 PF01171 PP-loop family LA08_17130 PF11734 TilS substrate C-terminal domain LA08_17135 PF02609 Exonuclease VII small subunit LA08_17140 PF00348 Polyprenyl synthetase LA08_17165 PF01523 Putative modulator of DNA gyrase LA08_17170 PF04751 Protein of unknown function (DUF615) LA08_17175 PF01523 Putative modulator of DNA gyrase LA08_17185 PF13502 AsmA-like C-terminal region LA08_17185 PF13116 Protein of unknown function LA08_17190 PF10150 Ribonuclease E/G family LA08_17190 PF00575 S1 RNA binding domain LA08_17195 PF02545 Maf-like protein LA08_17200 PF04402 Protein of unknown function (DUF541) LA08_17225 PF02590 Predicted SPOUT methyltransferase LA08_17250 PF01467 Cytidylyltransferase-like LA08_17270 PF08264 Anticodon-binding domain of tRNA LA08_17270 PF13603 Leucyl-tRNA synthetase, Domain 2 LA08_17270 PF00133 tRNA synthetases class I (I, L, M and V) LA08_17280 PF00085 Thioredoxin LA08_17355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LA08_17355 PF00128 Alpha amylase, catalytic domain LA08_17360 PF01609 Transposase DDE domain LA08_17360 PF05598 Transposase domain (DUF772) LA08_17365 PF05598 Transposase domain (DUF772) LA08_17365 PF01609 Transposase DDE domain LA08_17445 PF03797 Autotransporter beta-domain LA08_17445 PF00657 GDSL-like Lipase/Acylhydrolase LA08_17460 PF05690 Thiazole biosynthesis protein ThiG LA08_17470 PF02390 Putative methyltransferase LA08_17475 PF03600 Citrate transporter LA08_17475 PF02080 TrkA-C domain LA08_17500 PF01557 Fumarylacetoacetate (FAA) hydrolase family LA08_17505 PF01741 Large-conductance mechanosensitive channel, MscL LA08_17530 PF00588 SpoU rRNA Methylase family LA08_17530 PF08032 RNA 2'-O ribose methyltransferase substrate binding LA08_17560 PF11838 ERAP1-like C-terminal domain LA08_17560 PF01433 Peptidase family M1 domain LA08_17565 PF00873 AcrB/AcrD/AcrF family LA08_17570 PF00529 HlyD membrane-fusion protein of T1SS LA08_17570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_17580 PF00009 Elongation factor Tu GTP binding domain LA08_17585 PF01507 Phosphoadenosine phosphosulfate reductase family LA08_17590 PF00667 FAD binding domain LA08_17590 PF00175 Oxidoreductase NAD-binding domain LA08_17590 PF00258 Flavodoxin LA08_17595 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LA08_17595 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LA08_17600 PF01507 Phosphoadenosine phosphosulfate reductase family LA08_17620 PF00072 Response regulator receiver domain LA08_17620 PF00672 HAMP domain LA08_17620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_17620 PF01627 Hpt domain LA08_17620 PF00512 His Kinase A (phospho-acceptor) domain LA08_17645 PF03466 LysR substrate binding domain LA08_17645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_17650 PF10414 Sirohaem synthase dimerisation region LA08_17650 PF14824 Sirohaem biosynthesis protein central LA08_17650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA08_17655 PF00291 Pyridoxal-phosphate dependent enzyme LA08_17665 PF01661 Macro domain LA08_17670 PF00274 Fructose-bisphosphate aldolase class-I LA08_17675 PF00224 Pyruvate kinase, barrel domain LA08_17675 PF02887 Pyruvate kinase, alpha/beta domain LA08_17685 PF00162 Phosphoglycerate kinase LA08_17720 PF00199 Catalase LA08_17720 PF18011 C-terminal domain found in long catalases LA08_17720 PF06628 Catalase-related immune-responsive LA08_17745 PF01609 Transposase DDE domain LA08_17745 PF05598 Transposase domain (DUF772) LA08_17765 PF12833 Helix-turn-helix domain LA08_17765 PF02311 AraC-like ligand binding domain LA08_17795 PF00326 Prolyl oligopeptidase family LA08_17795 PF07676 WD40-like Beta Propeller Repeat LA08_17795 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LA08_17820 PF01609 Transposase DDE domain LA08_17820 PF05598 Transposase domain (DUF772) LA08_17825 PF03169 OPT oligopeptide transporter protein LA08_17845 PF02811 PHP domain LA08_17845 PF14579 Helix-hairpin-helix motif LA08_17845 PF07733 Bacterial DNA polymerase III alpha NTPase domain LA08_17845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LA08_17865 PF00717 Peptidase S24-like LA08_17865 PF01726 LexA DNA binding domain LA08_17895 PF13456 Reverse transcriptase-like LA08_17895 PF00300 Histidine phosphatase superfamily (branch 1) LA08_17930 PF11867 Domain of unknown function (DUF3387) LA08_17930 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LA08_17930 PF18766 SWI2/SNF2 ATPase LA08_17935 PF05598 Transposase domain (DUF772) LA08_17935 PF01609 Transposase DDE domain LA08_17950 PF01420 Type I restriction modification DNA specificity domain LA08_17955 PF05598 Transposase domain (DUF772) LA08_17955 PF01609 Transposase DDE domain LA08_17965 PF08780 Nucleotidyltransferase substrate binding protein like LA08_17970 PF02384 N-6 DNA Methylase LA08_17990 PF08463 EcoEI R protein C-terminal LA08_17990 PF00271 Helicase conserved C-terminal domain LA08_17990 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LA08_17990 PF04851 Type III restriction enzyme, res subunit LA08_18000 PF02384 N-6 DNA Methylase LA08_18010 PF01420 Type I restriction modification DNA specificity domain LA08_18110 PF04717 Type VI secretion system, phage-baseplate injector LA08_18110 PF16671 Actin cross-linking domain LA08_18120 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_18120 PF17871 AAA lid domain LA08_18120 PF07724 AAA domain (Cdc48 subfamily) LA08_18120 PF00004 ATPase family associated with various cellular activities (AAA) LA08_18175 PF16671 Actin cross-linking domain LA08_18175 PF04717 Type VI secretion system, phage-baseplate injector LA08_18185 PF04717 Type VI secretion system, phage-baseplate injector LA08_18185 PF16671 Actin cross-linking domain LA08_18195 PF01609 Transposase DDE domain LA08_18195 PF05598 Transposase domain (DUF772) LA08_18250 PF04717 Type VI secretion system, phage-baseplate injector LA08_18265 PF04972 BON domain LA08_18265 PF00691 OmpA family LA08_18305 PF02222 ATP-grasp domain LA08_18330 PF00730 HhH-GPD superfamily base excision DNA repair protein LA08_18345 PF00072 Response regulator receiver domain LA08_18345 PF00196 Bacterial regulatory proteins, luxR family LA08_18350 PF07730 Histidine kinase LA08_18365 PF05209 Septum formation inhibitor MinC, N-terminal domain LA08_18365 PF03775 Septum formation inhibitor MinC, C-terminal domain LA08_18370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LA08_18375 PF03776 Septum formation topological specificity factor MinE LA08_18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_18385 PF00512 His Kinase A (phospho-acceptor) domain LA08_18385 PF08521 Two-component sensor kinase N-terminal LA08_18390 PF00072 Response regulator receiver domain LA08_18390 PF00486 Transcriptional regulatory protein, C terminal LA08_18395 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LA08_18405 PF08019 Phosphoethanolamine transferase EptA/EptB LA08_18405 PF00884 Sulfatase LA08_18425 PF03412 Peptidase C39 family LA08_18425 PF00005 ABC transporter LA08_18425 PF00664 ABC transporter transmembrane region LA08_18445 PF02347 Glycine cleavage system P-protein LA08_18500 PF01196 Ribosomal protein L17 LA08_18505 PF01000 RNA polymerase Rpb3/RpoA insert domain LA08_18505 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LA08_18505 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LA08_18510 PF01479 S4 domain LA08_18510 PF00163 Ribosomal protein S4/S9 N-terminal domain LA08_18515 PF00411 Ribosomal protein S11 LA08_18520 PF00416 Ribosomal protein S13/S18 LA08_18525 PF00344 SecY translocase LA08_18530 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LA08_18535 PF00327 Ribosomal protein L30p/L7e LA08_18540 PF03719 Ribosomal protein S5, C-terminal domain LA08_18540 PF00333 Ribosomal protein S5, N-terminal domain LA08_18545 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LA08_18550 PF00347 Ribosomal protein L6 LA08_18555 PF00410 Ribosomal protein S8 LA08_18560 PF00253 Ribosomal protein S14p/S29e LA08_18565 PF00281 Ribosomal protein L5 LA08_18565 PF00673 ribosomal L5P family C-terminus LA08_18570 PF00467 KOW motif LA08_18570 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LA08_18575 PF00238 Ribosomal protein L14p/L23e LA08_18580 PF00366 Ribosomal protein S17 LA08_18585 PF00831 Ribosomal L29 protein LA08_18590 PF00252 Ribosomal protein L16p/L10e LA08_18595 PF00189 Ribosomal protein S3, C-terminal domain LA08_18595 PF07650 KH domain LA08_18600 PF00237 Ribosomal protein L22p/L17e LA08_18605 PF00203 Ribosomal protein S19 LA08_18610 PF03947 Ribosomal Proteins L2, C-terminal domain LA08_18610 PF00181 Ribosomal Proteins L2, RNA binding domain LA08_18615 PF00276 Ribosomal protein L23 LA08_18620 PF00573 Ribosomal protein L4/L1 family LA08_18625 PF00297 Ribosomal protein L3 LA08_18630 PF00338 Ribosomal protein S10p/S20e LA08_18640 PF03143 Elongation factor Tu C-terminal domain LA08_18640 PF03144 Elongation factor Tu domain 2 LA08_18640 PF00009 Elongation factor Tu GTP binding domain LA08_18645 PF00679 Elongation factor G C-terminus LA08_18645 PF14492 Elongation Factor G, domain II LA08_18645 PF03764 Elongation factor G, domain IV LA08_18645 PF00009 Elongation factor Tu GTP binding domain LA08_18645 PF03144 Elongation factor Tu domain 2 LA08_18650 PF00177 Ribosomal protein S7p/S5e LA08_18655 PF00164 Ribosomal protein S12/S23 LA08_18660 PF04998 RNA polymerase Rpb1, domain 5 LA08_18660 PF05000 RNA polymerase Rpb1, domain 4 LA08_18660 PF00623 RNA polymerase Rpb1, domain 2 LA08_18660 PF04983 RNA polymerase Rpb1, domain 3 LA08_18660 PF04997 RNA polymerase Rpb1, domain 1 LA08_18665 PF00562 RNA polymerase Rpb2, domain 6 LA08_18665 PF04563 RNA polymerase beta subunit LA08_18665 PF10385 RNA polymerase beta subunit external 1 domain LA08_18665 PF04565 RNA polymerase Rpb2, domain 3 LA08_18665 PF04560 RNA polymerase Rpb2, domain 7 LA08_18665 PF04561 RNA polymerase Rpb2, domain 2 LA08_18670 PF16320 Ribosomal protein L7/L12 dimerisation domain LA08_18670 PF00542 Ribosomal protein L7/L12 C-terminal domain LA08_18675 PF00466 Ribosomal protein L10 LA08_18680 PF00687 Ribosomal protein L1p/L10e family LA08_18685 PF03946 Ribosomal protein L11, N-terminal domain LA08_18685 PF00298 Ribosomal protein L11, RNA binding domain LA08_18695 PF02357 Transcription termination factor nusG LA08_18695 PF00467 KOW motif LA08_18700 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LA08_18710 PF03143 Elongation factor Tu C-terminal domain LA08_18710 PF00009 Elongation factor Tu GTP binding domain LA08_18710 PF03144 Elongation factor Tu domain 2 LA08_18730 PF06071 Protein of unknown function (DUF933) LA08_18730 PF01926 50S ribosome-binding GTPase LA08_18735 PF01195 Peptidyl-tRNA hydrolase LA08_18740 PF01386 Ribosomal L25p family LA08_18740 PF14693 Ribosomal protein TL5, C-terminal domain LA08_18745 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LA08_18745 PF14572 Phosphoribosyl synthetase-associated domain LA08_18755 PF00288 GHMP kinases N terminal domain LA08_18755 PF08544 GHMP kinases C terminal LA08_18760 PF03550 Outer membrane lipoprotein LolB LA08_18770 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LA08_18770 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LA08_18770 PF01488 Shikimate / quinate 5-dehydrogenase LA08_18775 PF03462 PCRF domain LA08_18775 PF00472 RF-1 domain LA08_18785 PF00994 Probable molybdopterin binding domain LA08_18790 PF03976 Polyphosphate kinase 2 (PPK2) LA08_18800 PF00708 Acylphosphatase LA08_18805 PF08534 Redoxin LA08_18810 PF03631 Virulence factor BrkB LA08_18815 PF03358 NADPH-dependent FMN reductase LA08_18830 PF17189 Glycosyl hydrolase family 30 beta sandwich domain LA08_18830 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain LA08_18840 PF04073 Aminoacyl-tRNA editing domain LA08_18850 PF01063 Amino-transferase class IV LA08_18880 PF02233 NAD(P) transhydrogenase beta subunit LA08_18885 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LA08_18905 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LA08_18905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LA08_18905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LA08_18920 PF01367 5'-3' exonuclease, C-terminal SAM fold LA08_18920 PF01612 3'-5' exonuclease LA08_18920 PF00476 DNA polymerase family A LA08_18920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA08_18925 PF00293 NUDIX domain LA08_18935 PF00561 alpha/beta hydrolase fold LA08_18970 PF05175 Methyltransferase small domain LA08_18970 PF17827 PrmC N-terminal domain LA08_18975 PF10417 C-terminal domain of 1-Cys peroxiredoxin LA08_18975 PF00578 AhpC/TSA family LA08_18980 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_18980 PF13192 Thioredoxin domain LA08_18985 PF03466 LysR substrate binding domain LA08_18985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_18995 PF01272 Transcription elongation factor, GreA/GreB, C-term LA08_18995 PF03449 Transcription elongation factor, N-terminal LA08_19000 PF00923 Transaldolase/Fructose-6-phosphate aldolase LA08_19035 PF01625 Peptide methionine sulfoxide reductase LA08_19070 PF00462 Glutaredoxin LA08_19075 PF01435 Peptidase family M48 LA08_19075 PF13181 Tetratricopeptide repeat LA08_19080 PF00486 Transcriptional regulatory protein, C terminal LA08_19080 PF00072 Response regulator receiver domain LA08_19085 PF00512 His Kinase A (phospho-acceptor) domain LA08_19085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_19085 PF00989 PAS fold LA08_19085 PF11808 Phosphate regulon sensor protein PhoR LA08_19090 PF02503 Polyphosphate kinase middle domain LA08_19090 PF13090 Polyphosphate kinase C-terminal domain 2 LA08_19090 PF17941 Polyphosphate kinase C-terminal domain 1 LA08_19090 PF13089 Polyphosphate kinase N-terminal domain LA08_19095 PF02541 Ppx/GppA phosphatase family LA08_19100 PF00534 Glycosyl transferases group 1 LA08_19100 PF13439 Glycosyltransferase Family 4 LA08_19105 PF01569 PAP2 superfamily LA08_19110 PF00149 Calcineurin-like phosphoesterase LA08_19130 PF04305 Protein of unknown function (DUF455) LA08_19135 PF00156 Phosphoribosyl transferase domain LA08_19150 PF08245 Mur ligase middle domain LA08_19150 PF02875 Mur ligase family, glutamate ligase domain LA08_19160 PF00300 Histidine phosphatase superfamily (branch 1) LA08_19165 PF10459 Peptidase S46 LA08_19185 PF08240 Alcohol dehydrogenase GroES-like domain LA08_19185 PF00107 Zinc-binding dehydrogenase LA08_19195 PF12857 TOBE-like domain LA08_19195 PF17850 CysA C-terminal regulatory domain LA08_19195 PF00005 ABC transporter LA08_19200 PF00528 Binding-protein-dependent transport system inner membrane component LA08_19205 PF00528 Binding-protein-dependent transport system inner membrane component LA08_19215 PF00155 Aminotransferase class I and II LA08_19225 PF00849 RNA pseudouridylate synthase LA08_19235 PF05736 OprF membrane domain LA08_19235 PF00691 OmpA family LA08_19245 PF00107 Zinc-binding dehydrogenase LA08_19245 PF08240 Alcohol dehydrogenase GroES-like domain LA08_19250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA08_19250 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_19295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_19295 PF00512 His Kinase A (phospho-acceptor) domain LA08_19295 PF00672 HAMP domain LA08_19295 PF00072 Response regulator receiver domain LA08_19295 PF17149 Periplasmic sensor domain found in signal transduction proteins LA08_19295 PF01627 Hpt domain LA08_19300 PF00990 Diguanylate cyclase, GGDEF domain LA08_19300 PF00072 Response regulator receiver domain LA08_19320 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LA08_19320 PF00749 tRNA synthetases class I (E and Q), catalytic domain LA08_19375 PF01728 FtsJ-like methyltransferase LA08_19375 PF18125 RlmM ferredoxin-like domain LA08_19380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA08_19380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LA08_19385 PF08450 SMP-30/Gluconolactonase/LRE-like region LA08_19405 PF00378 Enoyl-CoA hydratase/isomerase LA08_19410 PF00171 Aldehyde dehydrogenase family LA08_19415 PF00501 AMP-binding enzyme LA08_19415 PF13193 AMP-binding enzyme C-terminal domain LA08_19420 PF03466 LysR substrate binding domain LA08_19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_19430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LA08_19460 PF01494 FAD binding domain LA08_19465 PF01494 FAD binding domain LA08_19475 PF01923 Cobalamin adenosyltransferase LA08_19480 PF00850 Histone deacetylase domain LA08_19485 PF03968 OstA-like protein LA08_19485 PF04453 LPS transport system D LA08_19490 PF00639 PPIC-type PPIASE domain LA08_19490 PF09312 SurA N-terminal domain LA08_19495 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LA08_19505 PF00398 Ribosomal RNA adenine dimethylase LA08_19510 PF04379 ApaG domain LA08_19515 PF00149 Calcineurin-like phosphoesterase LA08_19520 PF00186 Dihydrofolate reductase LA08_19530 PF00303 Thymidylate synthase LA08_19535 PF01790 Prolipoprotein diacylglyceryl transferase LA08_19555 PF01219 Prokaryotic diacylglycerol kinase LA08_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_19580 PF08521 Two-component sensor kinase N-terminal LA08_19580 PF00512 His Kinase A (phospho-acceptor) domain LA08_19585 PF00486 Transcriptional regulatory protein, C terminal LA08_19585 PF00072 Response regulator receiver domain LA08_19590 PF13472 GDSL-like Lipase/Acylhydrolase family LA08_19595 PF00005 ABC transporter LA08_19605 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LA08_19615 PF00005 ABC transporter LA08_19655 PF00248 Aldo/keto reductase family LA08_19665 PF07662 Na+ dependent nucleoside transporter C-terminus LA08_19665 PF01773 Na+ dependent nucleoside transporter N-terminus LA08_19665 PF07670 Nucleoside recognition LA08_19670 PF00294 pfkB family carbohydrate kinase LA08_19690 PF01207 Dihydrouridine synthase (Dus) LA08_19705 PF02773 S-adenosylmethionine synthetase, C-terminal domain LA08_19705 PF00438 S-adenosylmethionine synthetase, N-terminal domain LA08_19705 PF02772 S-adenosylmethionine synthetase, central domain LA08_19715 PF00328 Histidine phosphatase superfamily (branch 2) LA08_19750 PF00311 Phosphoenolpyruvate carboxylase LA08_19760 PF05221 S-adenosyl-L-homocysteine hydrolase LA08_19760 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LA08_19765 PF13649 Methyltransferase domain LA08_19800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA08_19815 PF09286 Pro-kumamolisin, activation domain LA08_19815 PF00082 Subtilase family LA08_19820 PF00698 Acyl transferase domain LA08_19820 PF14765 Polyketide synthase dehydratase LA08_19820 PF08240 Alcohol dehydrogenase GroES-like domain LA08_19820 PF08659 KR domain LA08_19820 PF02801 Beta-ketoacyl synthase, C-terminal domain LA08_19820 PF00109 Beta-ketoacyl synthase, N-terminal domain LA08_19820 PF16197 Ketoacyl-synthetase C-terminal extension LA08_19820 PF00107 Zinc-binding dehydrogenase LA08_19820 PF00550 Phosphopantetheine attachment site LA08_19835 PF02219 Methylenetetrahydrofolate reductase LA08_19850 PF00293 NUDIX domain LA08_19860 PF02810 SEC-C motif LA08_19860 PF07517 SecA DEAD-like domain LA08_19860 PF01043 SecA preprotein cross-linking domain LA08_19860 PF07516 SecA Wing and Scaffold domain LA08_19865 PF01551 Peptidase family M23 LA08_19865 PF01476 LysM domain LA08_19875 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LA08_19880 PF00091 Tubulin/FtsZ family, GTPase domain LA08_19880 PF12327 FtsZ family, C-terminal domain LA08_19885 PF02491 SHS2 domain inserted in FTSA LA08_19890 PF03799 Cell division protein FtsQ LA08_19890 PF08478 POTRA domain, FtsQ-type LA08_19895 PF07478 D-ala D-ala ligase C-terminus LA08_19895 PF01820 D-ala D-ala ligase N-terminus LA08_19900 PF02875 Mur ligase family, glutamate ligase domain LA08_19900 PF08245 Mur ligase middle domain LA08_19900 PF01225 Mur ligase family, catalytic domain LA08_19905 PF03033 Glycosyltransferase family 28 N-terminal domain LA08_19905 PF04101 Glycosyltransferase family 28 C-terminal domain LA08_19910 PF01098 Cell cycle protein LA08_19915 PF00953 Glycosyl transferase family 4 LA08_19920 PF08245 Mur ligase middle domain LA08_19920 PF01225 Mur ligase family, catalytic domain LA08_19920 PF02875 Mur ligase family, glutamate ligase domain LA08_19925 PF08245 Mur ligase middle domain LA08_19925 PF01225 Mur ligase family, catalytic domain LA08_19925 PF02875 Mur ligase family, glutamate ligase domain LA08_19930 PF03717 Penicillin-binding Protein dimerisation domain LA08_19930 PF00905 Penicillin binding protein transpeptidase domain LA08_19935 PF04999 Cell division protein FtsL LA08_19940 PF01795 MraW methylase family LA08_19945 PF02381 MraZ protein, putative antitoxin-like LA08_19965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LA08_19975 PF02021 Uncharacterised protein family UPF0102 LA08_19980 PF04307 LexA-binding, inner membrane-associated putative hydrolase LA08_19985 PF02913 FAD linked oxidases, C-terminal domain LA08_19985 PF01565 FAD binding domain LA08_19990 PF00486 Transcriptional regulatory protein, C terminal LA08_19990 PF00072 Response regulator receiver domain LA08_19995 PF13492 GAF domain LA08_19995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_19995 PF02702 Osmosensitive K+ channel His kinase sensor domain LA08_19995 PF00512 His Kinase A (phospho-acceptor) domain LA08_19995 PF13493 Domain of unknown function (DUF4118) LA08_20000 PF02669 K+-transporting ATPase, c chain LA08_20010 PF03814 Potassium-transporting ATPase A subunit LA08_20035 PF02769 AIR synthase related protein, C-terminal domain LA08_20035 PF00586 AIR synthase related protein, N-terminal domain LA08_20040 PF01029 NusB family LA08_20045 PF00885 6,7-dimethyl-8-ribityllumazine synthase LA08_20050 PF00925 GTP cyclohydrolase II LA08_20050 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LA08_20055 PF00677 Lumazine binding domain LA08_20065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LA08_20065 PF01872 RibD C-terminal domain LA08_20075 PF03477 ATP cone domain LA08_20085 PF00464 Serine hydroxymethyltransferase LA08_20105 PF12848 ABC transporter LA08_20105 PF00005 ABC transporter LA08_20125 PF00756 Putative esterase LA08_20135 PF00107 Zinc-binding dehydrogenase LA08_20135 PF08240 Alcohol dehydrogenase GroES-like domain LA08_20140 PF02583 Metal-sensitive transcriptional repressor LA08_20150 PF00486 Transcriptional regulatory protein, C terminal LA08_20150 PF00072 Response regulator receiver domain LA08_20155 PF00672 HAMP domain LA08_20155 PF16527 Two-component sensor protein CpxA, periplasmic domain LA08_20155 PF00512 His Kinase A (phospho-acceptor) domain LA08_20155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_20195 PF00672 HAMP domain LA08_20195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_20195 PF00512 His Kinase A (phospho-acceptor) domain LA08_20200 PF04107 Glutamate-cysteine ligase family 2(GCS2) LA08_20215 PF01926 50S ribosome-binding GTPase LA08_20220 PF00034 Cytochrome c LA08_20250 PF05598 Transposase domain (DUF772) LA08_20250 PF01609 Transposase DDE domain LA08_20255 PF13291 ACT domain LA08_20255 PF00291 Pyridoxal-phosphate dependent enzyme LA08_20270 PF05598 Transposase domain (DUF772) LA08_20270 PF01609 Transposase DDE domain LA08_20280 PF01527 Transposase LA08_20310 PF01966 HD domain LA08_20310 PF01743 Poly A polymerase head domain LA08_20310 PF12627 Probable RNA and SrmB- binding site of polymerase A LA08_20325 PF05598 Transposase domain (DUF772) LA08_20325 PF01609 Transposase DDE domain LA08_20375 PF14883 Hypothetical glycosyl hydrolase family 13 LA08_20375 PF01522 Polysaccharide deacetylase LA08_20380 PF00535 Glycosyl transferase family 2 LA08_20390 PF01979 Amidohydrolase family LA08_20395 PF01380 SIS domain LA08_20400 PF00356 Bacterial regulatory proteins, lacI family LA08_20405 PF07690 Major Facilitator Superfamily LA08_20425 PF16355 Domain of unknown function (DUF4982) LA08_20425 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LA08_20425 PF00703 Glycosyl hydrolases family 2 LA08_20425 PF02837 Glycosyl hydrolases family 2, sugar binding domain LA08_20425 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LA08_20480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LA08_20485 PF00512 His Kinase A (phospho-acceptor) domain LA08_20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_20490 PF00072 Response regulator receiver domain LA08_20495 PF08446 PAS fold LA08_20495 PF00512 His Kinase A (phospho-acceptor) domain LA08_20495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_20495 PF01590 GAF domain LA08_20495 PF00360 Phytochrome region LA08_20500 PF04972 BON domain LA08_20505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LA08_20505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LA08_20510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LA08_20510 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LA08_20545 PF01467 Cytidylyltransferase-like LA08_20545 PF00293 NUDIX domain LA08_20555 PF17804 Tail specific protease N-terminal domain LA08_20555 PF11818 C-terminal domain of tail specific protease (DUF3340) LA08_20555 PF00595 PDZ domain LA08_20555 PF03572 Peptidase family S41 LA08_20565 PF12950 TaqI-like C-terminal specificity domain LA08_20565 PF07669 Eco57I restriction-modification methylase LA08_20570 PF04055 Radical SAM superfamily LA08_20570 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LA08_20575 PF03099 Biotin/lipoate A/B protein ligase family LA08_20580 PF04359 Protein of unknown function (DUF493) LA08_20595 PF07943 Penicillin-binding protein 5, C-terminal domain LA08_20595 PF00768 D-alanyl-D-alanine carboxypeptidase LA08_20605 PF03330 Lytic transglycolase LA08_20605 PF05036 Sporulation related domain LA08_20610 PF13406 Transglycosylase SLT domain LA08_20625 PF01471 Putative peptidoglycan binding domain LA08_20625 PF01476 LysM domain LA08_20625 PF01510 N-acetylmuramoyl-L-alanine amidase LA08_20670 PF01098 Cell cycle protein LA08_20675 PF03717 Penicillin-binding Protein dimerisation domain LA08_20675 PF00905 Penicillin binding protein transpeptidase domain LA08_20685 PF04085 rod shape-determining protein MreC LA08_20695 PF00294 pfkB family carbohydrate kinase LA08_20715 PF13673 Acetyltransferase (GNAT) domain LA08_20725 PF13533 Biotin-lipoyl like LA08_20735 PF01209 ubiE/COQ5 methyltransferase family LA08_20740 PF17152 Periplasmic sensor domain LA08_20740 PF00990 Diguanylate cyclase, GGDEF domain LA08_20745 PF01433 Peptidase family M1 domain LA08_20745 PF11838 ERAP1-like C-terminal domain LA08_20760 PF00004 ATPase family associated with various cellular activities (AAA) LA08_20760 PF07724 AAA domain (Cdc48 subfamily) LA08_20760 PF10431 C-terminal, D2-small domain, of ClpB protein LA08_20765 PF00227 Proteasome subunit LA08_20775 PF02899 Phage integrase, N-terminal SAM-like domain LA08_20775 PF00589 Phage integrase family LA08_20785 PF01678 Diaminopimelate epimerase LA08_20800 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LA08_20800 PF00326 Prolyl oligopeptidase family LA08_20805 PF00155 Aminotransferase class I and II LA08_20820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LA08_20820 PF00326 Prolyl oligopeptidase family LA08_20845 PF03900 Porphobilinogen deaminase, C-terminal domain LA08_20845 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LA08_20850 PF04397 LytTr DNA-binding domain LA08_20850 PF00072 Response regulator receiver domain LA08_20855 PF06580 Histidine kinase LA08_20855 PF07694 5TMR of 5TMR-LYT LA08_20865 PF13632 Glycosyl transferase family group 2 LA08_20900 PF01740 STAS domain LA08_20900 PF00916 Sulfate permease family LA08_20905 PF00150 Cellulase (glycosyl hydrolase family 5) LA08_20905 PF00553 Cellulose binding domain LA08_20920 PF00563 EAL domain LA08_20920 PF03707 Bacterial signalling protein N terminal repeat LA08_20920 PF00990 Diguanylate cyclase, GGDEF domain LA08_20960 PF01204 Trehalase LA08_20980 PF01544 CorA-like Mg2+ transporter protein LA08_20990 PF00324 Amino acid permease LA08_21000 PF01341 Glycosyl hydrolases family 6 LA08_21000 PF00553 Cellulose binding domain LA08_21000 PF00041 Fibronectin type III domain LA08_21005 PF03330 Lytic transglycolase LA08_21010 PF00892 EamA-like transporter family LA08_21030 PF07759 Protein of unknown function (DUF1615) LA08_21070 PF00106 short chain dehydrogenase LA08_21090 PF04715 Anthranilate synthase component I, N terminal region LA08_21090 PF00425 chorismate binding enzyme LA08_21095 PF00781 Diacylglycerol kinase catalytic domain LA08_21100 PF00583 Acetyltransferase (GNAT) family LA08_21105 PF00834 Ribulose-phosphate 3 epimerase family LA08_21110 PF00226 DnaJ domain LA08_21110 PF05099 Tellurite resistance protein TerB LA08_21115 PF01259 SAICAR synthetase LA08_21165 PF13244 Domain of unknown function (DUF4040) LA08_21165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LA08_21165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LA08_21165 PF00361 Proton-conducting membrane transporter LA08_21170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LA08_21175 PF00361 Proton-conducting membrane transporter LA08_21185 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LA08_21190 PF03334 Na+/H+ antiporter subunit LA08_21200 PF04209 homogentisate 1,2-dioxygenase LA08_21205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LA08_21210 PF01047 MarR family LA08_21220 PF00854 POT family LA08_21225 PF03301 Tryptophan 2,3-dioxygenase LA08_21235 PF00676 Dehydrogenase E1 component LA08_21270 PF00108 Thiolase, N-terminal domain LA08_21270 PF02803 Thiolase, C-terminal domain LA08_21325 PF05598 Transposase domain (DUF772) LA08_21325 PF01609 Transposase DDE domain LA08_21355 PF01427 D-ala-D-ala dipeptidase LA08_21360 PF01510 N-acetylmuramoyl-L-alanine amidase LA08_21370 PF13378 Enolase C-terminal domain-like LA08_21370 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LA08_21410 PF13520 Amino acid permease LA08_21445 PF05360 yiaA/B two helix domain LA08_21450 PF07995 Glucose / Sorbosone dehydrogenase LA08_21485 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_21485 PF01915 Glycosyl hydrolase family 3 C-terminal domain LA08_21485 PF14310 Fibronectin type III-like domain LA08_21490 PF02152 Dihydroneopterin aldolase LA08_21495 PF00814 Glycoprotease family LA08_21500 PF01165 Ribosomal protein S21 LA08_21505 PF09424 Yqey-like protein LA08_21520 PF03631 Virulence factor BrkB LA08_21525 PF10410 DnaB-helicase binding domain of primase LA08_21525 PF01807 CHC2 zinc finger LA08_21525 PF08275 DNA primase catalytic core, N-terminal domain LA08_21525 PF08278 DNA primase DnaG DnaB-binding LA08_21545 PF13593 SBF-like CPA transporter family (DUF4137) LA08_21560 PF01040 UbiA prenyltransferase family LA08_21585 PF00510 Cytochrome c oxidase subunit III LA08_21590 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LA08_21600 PF00115 Cytochrome C and Quinol oxidase polypeptide I LA08_21605 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LA08_21605 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LA08_21615 PF14850 DNA-binding domain of Proline dehydrogenase LA08_21615 PF01619 Proline dehydrogenase LA08_21615 PF00171 Aldehyde dehydrogenase family LA08_21615 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LA08_21630 PF00210 Ferritin-like domain LA08_21640 PF00293 NUDIX domain LA08_21655 PF00380 Ribosomal protein S9/S16 LA08_21660 PF00572 Ribosomal protein L13 LA08_21665 PF03232 Ubiquinone biosynthesis protein COQ7 LA08_21670 PF00893 Small Multidrug Resistance protein LA08_21675 PF02675 S-adenosylmethionine decarboxylase LA08_21680 PF00325 Bacterial regulatory proteins, crp family LA08_21680 PF00027 Cyclic nucleotide-binding domain LA08_21690 PF00218 Indole-3-glycerol phosphate synthase LA08_21695 PF02885 Glycosyl transferase family, helical bundle domain LA08_21695 PF00591 Glycosyl transferase family, a/b domain LA08_21710 PF00117 Glutamine amidotransferase class-I LA08_21735 PF03971 Monomeric isocitrate dehydrogenase LA08_21745 PF05598 Transposase domain (DUF772) LA08_21775 PF05598 Transposase domain (DUF772) LA08_21775 PF01609 Transposase DDE domain LA08_21790 PF00872 Transposase, Mutator family LA08_21805 PF14489 QueF-like protein LA08_21805 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LA08_21815 PF07687 Peptidase dimerisation domain LA08_21815 PF01546 Peptidase family M20/M25/M40 LA08_21820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LA08_21825 PF00873 AcrB/AcrD/AcrF family LA08_21830 PF00873 AcrB/AcrD/AcrF family LA08_21840 PF07063 Domain of unknown function (DUF1338) LA08_21880 PF00581 Rhodanese-like domain LA08_21885 PF02556 Preprotein translocase subunit SecB LA08_21890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LA08_21890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LA08_21900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LA08_21900 PF00205 Thiamine pyrophosphate enzyme, central domain LA08_21900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LA08_21905 PF00512 His Kinase A (phospho-acceptor) domain LA08_21905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_21910 PF02954 Bacterial regulatory protein, Fis family LA08_21910 PF00158 Sigma-54 interaction domain LA08_21910 PF00072 Response regulator receiver domain LA08_21925 PF07690 Major Facilitator Superfamily LA08_21930 PF00588 SpoU rRNA Methylase family LA08_21945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LA08_21945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LA08_21950 PF02661 Fic/DOC family LA08_21950 PF13784 Fic/DOC family N-terminal LA08_21955 PF01555 DNA methylase LA08_21965 PF00561 alpha/beta hydrolase fold LA08_21970 PF03692 Putative zinc- or iron-chelating domain LA08_21975 PF00501 AMP-binding enzyme LA08_21980 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LA08_21990 PF05598 Transposase domain (DUF772) LA08_22005 PF11871 Domain of unknown function (DUF3391) LA08_22005 PF01966 HD domain LA08_22010 PF07690 Major Facilitator Superfamily LA08_22035 PF00132 Bacterial transferase hexapeptide (six repeats) LA08_22040 PF03692 Putative zinc- or iron-chelating domain LA08_22045 PF00920 Dehydratase family LA08_22050 PF00589 Phage integrase family LA08_22050 PF13495 Phage integrase, N-terminal SAM-like domain LA08_22070 PF01609 Transposase DDE domain LA08_22070 PF05598 Transposase domain (DUF772) LA08_22080 PF01218 Coproporphyrinogen III oxidase LA08_22095 PF01612 3'-5' exonuclease LA08_22095 PF00476 DNA polymerase family A LA08_22095 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LA08_22095 PF01367 5'-3' exonuclease, C-terminal SAM fold LA08_22115 PF00456 Transketolase, thiamine diphosphate binding domain LA08_22115 PF17831 Pyruvate dehydrogenase E1 component middle domain LA08_22130 PF03377 TAL effector repeat LA08_22145 PF00665 Integrase core domain LA08_22145 PF13276 HTH-like domain LA08_22145 PF13333 Integrase core domain LA08_22150 PF01527 Transposase LA08_22180 PF04264 YceI-like domain LA08_22185 PF00881 Nitroreductase family LA08_22210 PF02592 Putative vitamin uptake transporter LA08_22215 PF08335 GlnD PII-uridylyltransferase LA08_22215 PF03710 Glutamate-ammonia ligase adenylyltransferase LA08_22225 PF08450 SMP-30/Gluconolactonase/LRE-like region LA08_22265 PF00793 DAHP synthetase I family LA08_22280 PF07715 TonB-dependent Receptor Plug Domain LA08_22280 PF00593 TonB dependent receptor LA08_22290 PF00118 TCP-1/cpn60 chaperonin family LA08_22295 PF00166 Chaperonin 10 Kd subunit LA08_22315 PF07992 Pyridine nucleotide-disulphide oxidoreductase LA08_22325 PF04545 Sigma-70, region 4 LA08_22325 PF04542 Sigma-70 region 2 LA08_22330 PF03167 Uracil DNA glycosylase superfamily LA08_22335 PF00072 Response regulator receiver domain LA08_22340 PF18075 FtsX extracellular domain LA08_22345 PF00005 ABC transporter LA08_22350 PF00270 DEAD/DEAH box helicase LA08_22350 PF12300 ATP-dependent RNA helicase RhlB LA08_22350 PF00271 Helicase conserved C-terminal domain LA08_22355 PF00085 Thioredoxin LA08_22360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LA08_22360 PF07498 Rho termination factor, N-terminal domain LA08_22360 PF07497 Rho termination factor, RNA-binding domain LA08_22375 PF01103 Surface antigen LA08_22375 PF17243 POTRA domain TamA domain 1 LA08_22380 PF04357 TamB, inner membrane protein subunit of TAM complex LA08_22415 PF07977 FabA-like domain LA08_22420 PF01553 Acyltransferase LA08_22430 PF00550 Phosphopantetheine attachment site LA08_22435 PF04820 Tryptophan halogenase LA08_22490 PF01638 HxlR-like helix-turn-helix LA08_22495 PF05368 NmrA-like family LA08_22510 PF03812 2-keto-3-deoxygluconate permease LA08_22515 PF01717 Cobalamin-independent synthase, Catalytic domain LA08_22515 PF08267 Cobalamin-independent synthase, N-terminal domain LA08_22525 PF03358 NADPH-dependent FMN reductase LA08_22530 PF03466 LysR substrate binding domain LA08_22530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_22535 PF02677 Epoxyqueuosine reductase QueH LA08_22555 PF00072 Response regulator receiver domain LA08_22555 PF00486 Transcriptional regulatory protein, C terminal LA08_22560 PF00551 Formyl transferase LA08_22580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LA08_22580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LA08_22585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LA08_22590 PF02146 Sir2 family LA08_22600 PF07690 Major Facilitator Superfamily LA08_22605 PF03466 LysR substrate binding domain LA08_22605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_22625 PF01026 TatD related DNase LA08_22675 PF00266 Aminotransferase class-V LA08_22690 PF01014 Uricase LA08_22690 PF09349 OHCU decarboxylase LA08_22740 PF00326 Prolyl oligopeptidase family LA08_22745 PF02785 Biotin carboxylase C-terminal domain LA08_22745 PF00289 Biotin carboxylase, N-terminal domain LA08_22745 PF00364 Biotin-requiring enzyme LA08_22745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LA08_22750 PF01039 Carboxyl transferase domain LA08_22755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LA08_22755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LA08_22755 PF02770 Acyl-CoA dehydrogenase, middle domain LA08_22810 PF02492 CobW/HypB/UreG, nucleotide-binding domain LA08_22810 PF07683 Cobalamin synthesis protein cobW C-terminal domain LA08_22830 PF03969 AFG1-like ATPase LA08_22845 PF00593 TonB dependent receptor LA08_22845 PF07715 TonB-dependent Receptor Plug Domain LA08_22850 PF13181 Tetratricopeptide repeat LA08_22855 PF05746 DALR anticodon binding domain LA08_22855 PF02092 Glycyl-tRNA synthetase beta subunit LA08_22860 PF02091 Glycyl-tRNA synthetase alpha subunit LA08_22865 PF00437 Type II/IV secretion system protein LA08_22865 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LA08_22890 PF00117 Glutamine amidotransferase class-I LA08_22890 PF00958 GMP synthase C terminal domain LA08_22900 PF00902 Sec-independent protein translocase protein (TatC) LA08_22905 PF02416 mttA/Hcf106 family LA08_22910 PF02416 mttA/Hcf106 family LA08_22920 PF00762 Ferrochelatase LA08_22925 PF12697 Alpha/beta hydrolase family LA08_22950 PF04381 Putative exonuclease, RdgC LA08_22955 PF01171 PP-loop family LA08_22970 PF00356 Bacterial regulatory proteins, lacI family LA08_22975 PF07477 Glycosyl hydrolase family 67 C-terminus LA08_22975 PF07488 Glycosyl hydrolase family 67 middle domain LA08_22975 PF03648 Glycosyl hydrolase family 67 N-terminus LA08_22985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LA08_22985 PF13378 Enolase C-terminal domain-like LA08_22990 PF04616 Glycosyl hydrolases family 43 LA08_22990 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LA08_22995 PF00933 Glycosyl hydrolase family 3 N terminal domain LA08_22995 PF01915 Glycosyl hydrolase family 3 C-terminal domain LA08_22995 PF14310 Fibronectin type III-like domain LA08_22995 PF07691 PA14 domain LA08_23000 PF01232 Mannitol dehydrogenase Rossmann domain LA08_23000 PF08125 Mannitol dehydrogenase C-terminal domain LA08_23020 PF02614 Glucuronate isomerase LA08_23025 PF00553 Cellulose binding domain LA08_23025 PF00331 Glycosyl hydrolase family 10 LA08_23025 PF03422 Carbohydrate binding module (family 6) LA08_23055 PF04616 Glycosyl hydrolases family 43 LA08_23095 PF12792 CSS motif domain associated with EAL LA08_23095 PF00563 EAL domain LA08_23100 PF00487 Fatty acid desaturase LA08_23105 PF00111 2Fe-2S iron-sulfur cluster binding domain LA08_23105 PF00970 Oxidoreductase FAD-binding domain LA08_23105 PF00175 Oxidoreductase NAD-binding domain LA08_23110 PF00440 Bacterial regulatory proteins, tetR family LA08_23145 PF01047 MarR family LA08_23150 PF02566 OsmC-like protein LA08_23245 PF01381 Helix-turn-helix LA08_23250 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LA08_23255 PF13538 UvrD-like helicase C-terminal domain LA08_23260 PF12705 PD-(D/E)XK nuclease superfamily LA08_23260 PF13361 UvrD-like helicase C-terminal domain LA08_23260 PF00580 UvrD/REP helicase N-terminal domain LA08_23265 PF17946 RecC C-terminal domain LA08_23305 PF00080 Copper/zinc superoxide dismutase (SODC) LA08_23310 PF00080 Copper/zinc superoxide dismutase (SODC) LA08_23315 PF00072 Response regulator receiver domain LA08_23315 PF02954 Bacterial regulatory protein, Fis family LA08_23315 PF00158 Sigma-54 interaction domain LA08_23320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LA08_23320 PF00989 PAS fold LA08_23320 PF00512 His Kinase A (phospho-acceptor) domain LA08_23325 PF00909 Ammonium Transporter Family LA08_23330 PF00543 Nitrogen regulatory protein P-II LA08_23335 PF00120 Glutamine synthetase, catalytic domain LA08_23335 PF03951 Glutamine synthetase, beta-Grasp domain LA08_23340 PF02673 Bacitracin resistance protein BacA LA08_23380 PF03061 Thioesterase superfamily LA08_23385 PF13091 PLD-like domain LA08_23400 PF10609 NUBPL iron-transfer P-loop NTPase LA08_23400 PF01883 Iron-sulfur cluster assembly protein LA08_23420 PF01381 Helix-turn-helix LA08_23425 PF13657 HipA N-terminal domain LA08_23425 PF07804 HipA-like C-terminal domain LA08_23430 PF10017 Histidine-specific methyltransferase, SAM-dependent LA08_23435 PF12867 DinB superfamily LA08_23435 PF03781 Sulfatase-modifying factor enzyme 1 LA08_23445 PF00528 Binding-protein-dependent transport system inner membrane component LA08_23450 PF00571 CBS domain LA08_23450 PF00005 ABC transporter LA08_23465 PF00005 ABC transporter LA08_23475 PF01734 Patatin-like phospholipase LA08_23490 PF05598 Transposase domain (DUF772) LA08_23490 PF01609 Transposase DDE domain LA08_23515 PF00248 Aldo/keto reductase family LA08_23520 PF16884 N-terminal domain of oxidoreductase LA08_23520 PF00107 Zinc-binding dehydrogenase LA08_23525 PF00248 Aldo/keto reductase family LA08_23535 PF00849 RNA pseudouridylate synthase LA08_23550 PF04408 Helicase associated domain (HA2) LA08_23550 PF00270 DEAD/DEAH box helicase LA08_23550 PF08482 ATP-dependent helicase C-terminal LA08_23550 PF00271 Helicase conserved C-terminal domain LA08_23555 PF07308 Protein of unknown function (DUF1456) LA08_23560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LA08_23560 PF13378 Enolase C-terminal domain-like LA08_23570 PF01557 Fumarylacetoacetate (FAA) hydrolase family LA08_23585 PF00248 Aldo/keto reductase family LA08_23595 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LA08_23595 PF04616 Glycosyl hydrolases family 43 LA08_23620 PF00196 Bacterial regulatory proteins, luxR family LA08_23620 PF00072 Response regulator receiver domain LA08_23625 PF13193 AMP-binding enzyme C-terminal domain LA08_23625 PF00501 AMP-binding enzyme LA08_23625 PF16177 Acetyl-coenzyme A synthetase N-terminus LA08_23640 PF04341 Protein of unknown function, DUF485 LA08_23645 PF00474 Sodium:solute symporter family LA08_23660 PF03372 Endonuclease/Exonuclease/phosphatase family LA08_23670 PF04226 Transglycosylase associated protein LA08_23675 PF01648 4'-phosphopantetheinyl transferase superfamily LA08_23680 PF09423 PhoD-like phosphatase LA08_23680 PF16655 PhoD-like phosphatase, N-terminal domain LA08_23685 PF16655 PhoD-like phosphatase, N-terminal domain LA08_23685 PF09423 PhoD-like phosphatase LA08_23690 PF02527 rRNA small subunit methyltransferase G LA08_23705 PF00830 Ribosomal L28 family LA08_23710 PF00471 Ribosomal protein L33 LA08_23715 PF04909 Amidohydrolase LA08_23735 PF04303 PrpF protein LA08_23740 PF03737 Aldolase/RraA LA08_23745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LA08_23745 PF03466 LysR substrate binding domain LA08_23750 PF13091 PLD-like domain LA08_23750 PF13396 Phospholipase_D-nuclease N-terminal LA08_23770 PF13361 UvrD-like helicase C-terminal domain LA08_23770 PF00580 UvrD/REP helicase N-terminal domain LA08_23785 PF13520 Amino acid permease LA08_23795 PF02646 RmuC family LA08_23805 PF00255 Glutathione peroxidase LA08_23825 PF04055 Radical SAM superfamily LA08_23835 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LA08_23850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LA08_23850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LA08_23860 PF13180 PDZ domain LA08_23860 PF03572 Peptidase family S41 LA08_23865 PF01551 Peptidase family M23 LA08_23875 PF04389 Peptidase family M28 LA08_23925 PF02463 RecF/RecN/SMC N terminal domain LA08_23930 PF01227 GTP cyclohydrolase I LA08_23955 PF00083 Sugar (and other) transporter LA08_24055 PF02595 Glycerate kinase family LA08_24060 PF07690 Major Facilitator Superfamily LA08_24075 PF17785 PUA-like domain LA08_24075 PF10672 S-adenosylmethionine-dependent methyltransferase LA08_24085 PF03741 Integral membrane protein TerC family LA08_24090 PF01694 Rhomboid family LA08_24095 PF03009 Glycerophosphoryl diester phosphodiesterase family LA08_24105 PF01569 PAP2 superfamily LA08_24110 PF01926 50S ribosome-binding GTPase LA08_24110 PF12631 MnmE helical domain LA08_24110 PF10396 GTP-binding protein TrmE N-terminus LA08_24115 PF01522 Polysaccharide deacetylase LA08_24120 PF14849 YidC periplasmic domain LA08_24120 PF02096 60Kd inner membrane protein LA08_24125 PF00825 Ribonuclease P LA08_24130 PF00468 Ribosomal protein L34