locus-tag class description H4J00_00005 PF00308 Bacterial dnaA protein H4J00_00005 PF08299 Bacterial dnaA protein helix-turn-helix H4J00_00005 PF11638 DnaA N-terminal domain H4J00_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain H4J00_00010 PF02767 DNA polymerase III beta subunit, central domain H4J00_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain H4J00_00015 PF02463 RecF/RecN/SMC N terminal domain H4J00_00020 PF00204 DNA gyrase B H4J00_00020 PF00986 DNA gyrase B subunit, carboxyl terminus H4J00_00020 PF18053 DNA gyrase B subunit insert domain H4J00_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_00020 PF01751 Toprim domain H4J00_00030 PF01435 Peptidase family M48 H4J00_00040 PF03544 Gram-negative bacterial TonB protein C-terminal H4J00_00045 PF01618 MotA/TolQ/ExbB proton channel family H4J00_00050 PF02472 Biopolymer transport protein ExbD/TolR H4J00_00055 PF02472 Biopolymer transport protein ExbD/TolR H4J00_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H4J00_00070 PF13091 PLD-like domain H4J00_00070 PF13396 Phospholipase_D-nuclease N-terminal H4J00_00085 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_00085 PF00107 Zinc-binding dehydrogenase H4J00_00090 PF00150 Cellulase (glycosyl hydrolase family 5) H4J00_00100 PF00150 Cellulase (glycosyl hydrolase family 5) H4J00_00115 PF00150 Cellulase (glycosyl hydrolase family 5) H4J00_00125 PF04389 Peptidase family M28 H4J00_00135 PF01551 Peptidase family M23 H4J00_00140 PF13180 PDZ domain H4J00_00140 PF03572 Peptidase family S41 H4J00_00145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H4J00_00145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H4J00_00160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H4J00_00170 PF04055 Radical SAM superfamily H4J00_00185 PF06827 Zinc finger found in FPG and IleRS H4J00_00185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H4J00_00185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H4J00_00205 PF04349 Periplasmic glucan biosynthesis protein, MdoG H4J00_00215 PF00265 Thymidine kinase H4J00_00220 PF13361 UvrD-like helicase C-terminal domain H4J00_00220 PF00580 UvrD/REP helicase N-terminal domain H4J00_00240 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) H4J00_00245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H4J00_00250 PF04820 Tryptophan halogenase H4J00_00265 PF00356 Bacterial regulatory proteins, lacI family H4J00_00275 PF01553 Acyltransferase H4J00_00280 PF16197 Ketoacyl-synthetase C-terminal extension H4J00_00280 PF00109 Beta-ketoacyl synthase, N-terminal domain H4J00_00280 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_00280 PF02801 Beta-ketoacyl synthase, C-terminal domain H4J00_00280 PF00550 Phosphopantetheine attachment site H4J00_00280 PF14765 Polyketide synthase dehydratase H4J00_00280 PF00698 Acyl transferase domain H4J00_00280 PF08659 KR domain H4J00_00315 PF04616 Glycosyl hydrolases family 43 H4J00_00340 PF00553 Cellulose binding domain H4J00_00340 PF03422 Carbohydrate binding module (family 6) H4J00_00340 PF00331 Glycosyl hydrolase family 10 H4J00_00345 PF02614 Glucuronate isomerase H4J00_00370 PF00326 Prolyl oligopeptidase family H4J00_00375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H4J00_00375 PF02785 Biotin carboxylase C-terminal domain H4J00_00375 PF00289 Biotin carboxylase, N-terminal domain H4J00_00375 PF00364 Biotin-requiring enzyme H4J00_00375 PF18140 Propionyl-coenzyme A carboxylase BT domain H4J00_00380 PF01039 Carboxyl transferase domain H4J00_00385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_00385 PF02770 Acyl-CoA dehydrogenase, middle domain H4J00_00385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_00435 PF07683 Cobalamin synthesis protein cobW C-terminal domain H4J00_00435 PF02492 CobW/HypB/UreG, nucleotide-binding domain H4J00_00460 PF03969 AFG1-like ATPase H4J00_00465 PF01047 MarR family H4J00_00470 PF02566 OsmC-like protein H4J00_00500 PF00248 Aldo/keto reductase family H4J00_00505 PF00107 Zinc-binding dehydrogenase H4J00_00505 PF16884 N-terminal domain of oxidoreductase H4J00_00510 PF00248 Aldo/keto reductase family H4J00_00520 PF00849 RNA pseudouridylate synthase H4J00_00530 PF08482 ATP-dependent helicase C-terminal H4J00_00530 PF04408 Helicase associated domain (HA2) H4J00_00530 PF00270 DEAD/DEAH box helicase H4J00_00530 PF00271 Helicase conserved C-terminal domain H4J00_00540 PF07308 Protein of unknown function (DUF1456) H4J00_00545 PF13454 FAD-NAD(P)-binding H4J00_00565 PF00266 Aminotransferase class-V H4J00_00570 PF01546 Peptidase family M20/M25/M40 H4J00_00570 PF07687 Peptidase dimerisation domain H4J00_00590 PF00920 Dehydratase family H4J00_00595 PF03692 Putative zinc- or iron-chelating domain H4J00_00600 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_00605 PF07690 Major Facilitator Superfamily H4J00_00610 PF11871 Domain of unknown function (DUF3391) H4J00_00610 PF01966 HD domain H4J00_00630 PF00171 Aldehyde dehydrogenase family H4J00_00640 PF01494 FAD binding domain H4J00_00660 PF00970 Oxidoreductase FAD-binding domain H4J00_00660 PF00111 2Fe-2S iron-sulfur cluster binding domain H4J00_00665 PF00355 Rieske [2Fe-2S] domain H4J00_00670 PF01144 Coenzyme A transferase H4J00_00675 PF01144 Coenzyme A transferase H4J00_00680 PF00108 Thiolase, N-terminal domain H4J00_00680 PF02803 Thiolase, C-terminal domain H4J00_00685 PF00775 Dioxygenase H4J00_00685 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal H4J00_00700 PF10397 Adenylosuccinate lyase C-terminus H4J00_00700 PF00206 Lyase H4J00_00705 PF12146 Serine aminopeptidase, S33 H4J00_00710 PF02627 Carboxymuconolactone decarboxylase family H4J00_00725 PF09339 IclR helix-turn-helix domain H4J00_00725 PF01614 Bacterial transcriptional regulator H4J00_00735 PF07859 alpha/beta hydrolase fold H4J00_00765 PF03377 TAL effector repeat H4J00_00790 PF01134 Glucose inhibited division protein A H4J00_00790 PF13932 GidA associated domain H4J00_00805 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_00825 PF13649 Methyltransferase domain H4J00_00835 PF12697 Alpha/beta hydrolase family H4J00_00845 PF00155 Aminotransferase class I and II H4J00_00850 PF04055 Radical SAM superfamily H4J00_00850 PF06968 Biotin and Thiamin Synthesis associated domain H4J00_00855 PF00156 Phosphoribosyl transferase domain H4J00_00860 PF01040 UbiA prenyltransferase family H4J00_00885 PF04357 TamB, inner membrane protein subunit of TAM complex H4J00_00890 PF17243 POTRA domain TamA domain 1 H4J00_00890 PF01103 Surface antigen H4J00_00895 PF00593 TonB dependent receptor H4J00_00895 PF07715 TonB-dependent Receptor Plug Domain H4J00_00905 PF13181 Tetratricopeptide repeat H4J00_00910 PF05746 DALR anticodon binding domain H4J00_00910 PF02092 Glycyl-tRNA synthetase beta subunit H4J00_00915 PF02091 Glycyl-tRNA synthetase alpha subunit H4J00_00920 PF00437 Type II/IV secretion system protein H4J00_00920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H4J00_00930 PF00117 Glutamine amidotransferase class-I H4J00_00930 PF00958 GMP synthase C terminal domain H4J00_00940 PF00902 Sec-independent protein translocase protein (TatC) H4J00_00945 PF02416 mttA/Hcf106 family H4J00_00950 PF02416 mttA/Hcf106 family H4J00_00960 PF00762 Ferrochelatase H4J00_00965 PF12697 Alpha/beta hydrolase family H4J00_00985 PF04381 Putative exonuclease, RdgC H4J00_00990 PF01171 PP-loop family H4J00_01000 PF00356 Bacterial regulatory proteins, lacI family H4J00_01005 PF07477 Glycosyl hydrolase family 67 C-terminus H4J00_01005 PF07488 Glycosyl hydrolase family 67 middle domain H4J00_01005 PF03648 Glycosyl hydrolase family 67 N-terminus H4J00_01015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H4J00_01015 PF13378 Enolase C-terminal domain-like H4J00_01020 PF04616 Glycosyl hydrolases family 43 H4J00_01020 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain H4J00_01025 PF14310 Fibronectin type III-like domain H4J00_01025 PF07691 PA14 domain H4J00_01025 PF01915 Glycosyl hydrolase family 3 C-terminal domain H4J00_01025 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_01030 PF08125 Mannitol dehydrogenase C-terminal domain H4J00_01030 PF01232 Mannitol dehydrogenase Rossmann domain H4J00_01050 PF05819 NolX protein H4J00_01100 PF01313 Bacterial export proteins, family 3 H4J00_01105 PF00813 FliP family H4J00_01120 PF00771 FHIPEP family H4J00_01125 PF01312 FlhB HrpN YscU SpaS Family H4J00_01140 PF01514 Secretory protein of YscJ/FliF family H4J00_01155 PF18269 T3SS EscN ATPase C-terminal domain H4J00_01155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H4J00_01155 PF02874 ATP synthase alpha/beta family, beta-barrel domain H4J00_01165 PF01311 Bacterial export proteins, family 1 H4J00_01170 PF03958 Bacterial type II/III secretion system short domain H4J00_01170 PF00263 Bacterial type II and III secretion system protein H4J00_01180 PF01464 Transglycosylase SLT domain H4J00_01200 PF12794 Mechanosensitive ion channel inner membrane domain 1 H4J00_01200 PF00924 Mechanosensitive ion channel H4J00_01200 PF12795 Mechanosensitive ion channel porin domain H4J00_01215 PF03109 ABC1 family H4J00_01220 PF05661 Protein of unknown function (DUF808) H4J00_01225 PF02638 Glycosyl hydrolase-like 10 H4J00_01230 PF00990 Diguanylate cyclase, GGDEF domain H4J00_01235 PF08323 Starch synthase catalytic domain H4J00_01235 PF00534 Glycosyl transferases group 1 H4J00_01240 PF00128 Alpha amylase, catalytic domain H4J00_01240 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H4J00_01240 PF02806 Alpha amylase, C-terminal all-beta domain H4J00_01245 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H4J00_01245 PF11941 Domain of unknown function (DUF3459) H4J00_01245 PF00128 Alpha amylase, catalytic domain H4J00_01250 PF02446 4-alpha-glucanotransferase H4J00_01255 PF00128 Alpha amylase, catalytic domain H4J00_01265 PF00128 Alpha amylase, catalytic domain H4J00_01265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H4J00_01270 PF13460 NAD(P)H-binding H4J00_01280 PF05598 Transposase domain (DUF772) H4J00_01280 PF01609 Transposase DDE domain H4J00_01285 PF13936 Helix-turn-helix domain H4J00_01285 PF00665 Integrase core domain H4J00_01300 PF01609 Transposase DDE domain H4J00_01300 PF05598 Transposase domain (DUF772) H4J00_01315 PF05598 Transposase domain (DUF772) H4J00_01315 PF01609 Transposase DDE domain H4J00_01335 PF03377 TAL effector repeat H4J00_01350 PF04717 Type VI secretion system, phage-baseplate injector H4J00_01355 PF03377 TAL effector repeat H4J00_01375 PF03377 TAL effector repeat H4J00_01425 PF01026 TatD related DNase H4J00_01445 PF07690 Major Facilitator Superfamily H4J00_01455 PF02146 Sir2 family H4J00_01460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H4J00_01465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H4J00_01465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H4J00_01485 PF00551 Formyl transferase H4J00_01490 PF00072 Response regulator receiver domain H4J00_01490 PF00486 Transcriptional regulatory protein, C terminal H4J00_01510 PF02677 Epoxyqueuosine reductase QueH H4J00_01515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_01515 PF03466 LysR substrate binding domain H4J00_01520 PF03358 NADPH-dependent FMN reductase H4J00_01530 PF01717 Cobalamin-independent synthase, Catalytic domain H4J00_01530 PF08267 Cobalamin-independent synthase, N-terminal domain H4J00_01540 PF01638 HxlR-like helix-turn-helix H4J00_01545 PF05368 NmrA-like family H4J00_01570 PF00490 Delta-aminolevulinic acid dehydratase H4J00_01585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_01585 PF03466 LysR substrate binding domain H4J00_01595 PF00667 FAD binding domain H4J00_01595 PF00258 Flavodoxin H4J00_01595 PF00175 Oxidoreductase NAD-binding domain H4J00_01610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H4J00_01610 PF01488 Shikimate / quinate 5-dehydrogenase H4J00_01610 PF08501 Shikimate dehydrogenase substrate binding domain H4J00_01625 PF06733 DEAD_2 H4J00_01625 PF13307 Helicase C-terminal domain H4J00_01635 PF13533 Biotin-lipoyl like H4J00_01640 PF00199 Catalase H4J00_01640 PF06628 Catalase-related immune-responsive H4J00_01655 PF01207 Dihydrouridine synthase (Dus) H4J00_01665 PF00486 Transcriptional regulatory protein, C terminal H4J00_01665 PF00072 Response regulator receiver domain H4J00_01670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_01685 PF06167 Glucose-regulated metallo-peptidase M90 H4J00_01695 PF03099 Biotin/lipoate A/B protein ligase family H4J00_01695 PF02237 Biotin protein ligase C terminal domain H4J00_01695 PF08279 HTH domain H4J00_01700 PF03309 Type III pantothenate kinase H4J00_01715 PF02223 Thymidylate kinase H4J00_01735 PF00491 Arginase family H4J00_01755 PF00579 tRNA synthetases class I (W and Y) H4J00_01760 PF00753 Metallo-beta-lactamase superfamily H4J00_01785 PF00892 EamA-like transporter family H4J00_01805 PF00199 Catalase H4J00_01820 PF02789 Cytosol aminopeptidase family, N-terminal domain H4J00_01820 PF00883 Cytosol aminopeptidase family, catalytic domain H4J00_01830 PF01594 AI-2E family transporter H4J00_01855 PF00595 PDZ domain H4J00_01865 PF00512 His Kinase A (phospho-acceptor) domain H4J00_01865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_01865 PF08521 Two-component sensor kinase N-terminal H4J00_01875 PF01370 NAD dependent epimerase/dehydratase family H4J00_01875 PF08338 Domain of unknown function (DUF1731) H4J00_01905 PF00665 Integrase core domain H4J00_01905 PF13936 Helix-turn-helix domain H4J00_01910 PF00440 Bacterial regulatory proteins, tetR family H4J00_01915 PF00175 Oxidoreductase NAD-binding domain H4J00_01915 PF00970 Oxidoreductase FAD-binding domain H4J00_01915 PF00111 2Fe-2S iron-sulfur cluster binding domain H4J00_01920 PF00487 Fatty acid desaturase H4J00_01925 PF12792 CSS motif domain associated with EAL H4J00_01925 PF00563 EAL domain H4J00_01945 PF01078 Magnesium chelatase, subunit ChlI H4J00_01945 PF13335 Magnesium chelatase, subunit ChlI C-terminal H4J00_01950 PF04380 Membrane fusogenic activity H4J00_01955 PF00543 Nitrogen regulatory protein P-II H4J00_01995 PF04717 Type VI secretion system, phage-baseplate injector H4J00_02000 PF03377 TAL effector repeat H4J00_02005 PF03377 TAL effector repeat H4J00_02030 PF17284 Spermidine synthase tetramerisation domain H4J00_02035 PF17810 Arginine decarboxylase helical bundle domain H4J00_02035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H4J00_02035 PF17944 Arginine decarboxylase C-terminal helical extension H4J00_02055 PF01757 Acyltransferase family H4J00_02060 PF00106 short chain dehydrogenase H4J00_02075 PF03485 Arginyl tRNA synthetase N terminal domain H4J00_02075 PF05746 DALR anticodon binding domain H4J00_02075 PF00750 tRNA synthetases class I (R) H4J00_02080 PF04002 RadC-like JAB domain H4J00_02085 PF04127 DNA / pantothenate metabolism flavoprotein H4J00_02085 PF02441 Flavoprotein H4J00_02090 PF00692 dUTPase H4J00_02095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H4J00_02095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H4J00_02095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H4J00_02095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H4J00_02110 PF00535 Glycosyl transferase family 2 H4J00_02115 PF01370 NAD dependent epimerase/dehydratase family H4J00_02125 PF17762 HTH domain found in ParB protein H4J00_02125 PF02195 ParB-like nuclease domain H4J00_02130 PF13614 AAA domain H4J00_02140 PF00156 Phosphoribosyl transferase domain H4J00_02155 PF01259 SAICAR synthetase H4J00_02160 PF00226 DnaJ domain H4J00_02160 PF05099 Tellurite resistance protein TerB H4J00_02165 PF00834 Ribulose-phosphate 3 epimerase family H4J00_02170 PF00583 Acetyltransferase (GNAT) family H4J00_02175 PF00781 Diacylglycerol kinase catalytic domain H4J00_02180 PF00425 chorismate binding enzyme H4J00_02180 PF04715 Anthranilate synthase component I, N terminal region H4J00_02195 PF00117 Glutamine amidotransferase class-I H4J00_02205 PF00591 Glycosyl transferase family, a/b domain H4J00_02205 PF02885 Glycosyl transferase family, helical bundle domain H4J00_02210 PF00218 Indole-3-glycerol phosphate synthase H4J00_02220 PF00325 Bacterial regulatory proteins, crp family H4J00_02220 PF00027 Cyclic nucleotide-binding domain H4J00_02225 PF02675 S-adenosylmethionine decarboxylase H4J00_02230 PF00893 Small Multidrug Resistance protein H4J00_02235 PF03232 Ubiquinone biosynthesis protein COQ7 H4J00_02240 PF00572 Ribosomal protein L13 H4J00_02245 PF00380 Ribosomal protein S9/S16 H4J00_02260 PF00293 NUDIX domain H4J00_02270 PF00210 Ferritin-like domain H4J00_02275 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H4J00_02275 PF00072 Response regulator receiver domain H4J00_02275 PF01627 Hpt domain H4J00_02275 PF00672 HAMP domain H4J00_02275 PF00512 His Kinase A (phospho-acceptor) domain H4J00_02275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_02280 PF00563 EAL domain H4J00_02280 PF00990 Diguanylate cyclase, GGDEF domain H4J00_02280 PF03707 Bacterial signalling protein N terminal repeat H4J00_02300 PF01521 Iron-sulphur cluster biosynthesis H4J00_02310 PF00293 NUDIX domain H4J00_02310 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain H4J00_02310 PF09297 NADH pyrophosphatase zinc ribbon domain H4J00_02315 PF03186 CobD/Cbib protein H4J00_02315 PF17113 Regulatory signalling modulator protein AmpE H4J00_02330 PF07690 Major Facilitator Superfamily H4J00_02345 PF12805 FUSC-like inner membrane protein yccS H4J00_02355 PF12704 MacB-like periplasmic core domain H4J00_02355 PF02687 FtsX-like permease family H4J00_02355 PF00005 ABC transporter H4J00_02360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H4J00_02360 PF02843 Phosphoribosylglycinamide synthetase, C domain H4J00_02360 PF02844 Phosphoribosylglycinamide synthetase, N domain H4J00_02365 PF01808 AICARFT/IMPCHase bienzyme H4J00_02365 PF02142 MGS-like domain H4J00_02395 PF02954 Bacterial regulatory protein, Fis family H4J00_02405 PF01381 Helix-turn-helix H4J00_02435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H4J00_02435 PF02785 Biotin carboxylase C-terminal domain H4J00_02435 PF00289 Biotin carboxylase, N-terminal domain H4J00_02445 PF00364 Biotin-requiring enzyme H4J00_02450 PF01220 Dehydroquinase class II H4J00_02460 PF11412 Disulphide bond corrector protein DsbC H4J00_02460 PF02683 Cytochrome C biogenesis protein transmembrane region H4J00_02465 PF03091 CutA1 divalent ion tolerance protein H4J00_02470 PF00270 DEAD/DEAH box helicase H4J00_02470 PF00271 Helicase conserved C-terminal domain H4J00_02470 PF17764 3′ DNA-binding domain (3′BD) H4J00_02470 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H4J00_02470 PF18074 Primosomal protein N C-terminal domain H4J00_02490 PF01554 MatE H4J00_02495 PF01343 Peptidase family S49 H4J00_02520 PF01300 Telomere recombination H4J00_02525 PF01751 Toprim domain H4J00_02525 PF01131 DNA topoisomerase H4J00_02525 PF13368 Topoisomerase C-terminal repeat H4J00_02535 PF07963 Prokaryotic N-terminal methylation motif H4J00_02535 PF00114 Pilin (bacterial filament) H4J00_02540 PF04361 Protein of unknown function (DUF494) H4J00_02545 PF02481 DNA recombination-mediator protein A H4J00_02545 PF17782 DprA winged helix domain H4J00_02555 PF01327 Polypeptide deformylase H4J00_02560 PF02911 Formyl transferase, C-terminal domain H4J00_02560 PF00551 Formyl transferase H4J00_02565 PF01029 NusB family H4J00_02565 PF01189 16S rRNA methyltransferase RsmB/F H4J00_02580 PF00535 Glycosyl transferase family 2 H4J00_02600 PF00925 GTP cyclohydrolase II H4J00_02610 PF03279 Bacterial lipid A biosynthesis acyltransferase H4J00_02615 PF02580 D-Tyr-tRNA(Tyr) deacylase H4J00_02620 PF04546 Sigma-70, non-essential region H4J00_02620 PF03979 Sigma-70 factor, region 1.1 H4J00_02620 PF00140 Sigma-70 factor, region 1.2 H4J00_02620 PF04542 Sigma-70 region 2 H4J00_02620 PF04539 Sigma-70 region 3 H4J00_02620 PF04545 Sigma-70, region 4 H4J00_02655 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region H4J00_02655 PF00326 Prolyl oligopeptidase family H4J00_02660 PF02798 Glutathione S-transferase, N-terminal domain H4J00_02660 PF00043 Glutathione S-transferase, C-terminal domain H4J00_02700 PF00005 ABC transporter H4J00_02710 PF01381 Helix-turn-helix H4J00_02720 PF02583 Metal-sensitive transcriptional repressor H4J00_02730 PF00175 Oxidoreductase NAD-binding domain H4J00_02730 PF01383 CpcD/allophycocyanin linker domain H4J00_02735 PF00005 ABC transporter H4J00_02740 PF01061 ABC-2 type transporter H4J00_02750 PF02558 Ketopantoate reductase PanE/ApbA H4J00_02750 PF08546 Ketopantoate reductase PanE/ApbA C terminal H4J00_02770 PF01609 Transposase DDE domain H4J00_02770 PF05598 Transposase domain (DUF772) H4J00_02780 PF13406 Transglycosylase SLT domain H4J00_02800 PF00665 Integrase core domain H4J00_02800 PF13936 Helix-turn-helix domain H4J00_02815 PF05598 Transposase domain (DUF772) H4J00_02815 PF01609 Transposase DDE domain H4J00_02900 PF04264 YceI-like domain H4J00_02905 PF00881 Nitroreductase family H4J00_02930 PF02592 Putative vitamin uptake transporter H4J00_02935 PF08335 GlnD PII-uridylyltransferase H4J00_02935 PF03710 Glutamate-ammonia ligase adenylyltransferase H4J00_02965 PF03377 TAL effector repeat H4J00_02970 PF00005 ABC transporter H4J00_02985 PF07715 TonB-dependent Receptor Plug Domain H4J00_02985 PF00593 TonB dependent receptor H4J00_02990 PF05598 Transposase domain (DUF772) H4J00_02990 PF01609 Transposase DDE domain H4J00_03035 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_03035 PF00107 Zinc-binding dehydrogenase H4J00_03035 PF13823 Alcohol dehydrogenase GroES-associated H4J00_03065 PF02322 Cytochrome bd terminal oxidase subunit II H4J00_03070 PF01654 Cytochrome bd terminal oxidase subunit I H4J00_03080 PF02954 Bacterial regulatory protein, Fis family H4J00_03080 PF00072 Response regulator receiver domain H4J00_03080 PF00158 Sigma-54 interaction domain H4J00_03105 PF06580 Histidine kinase H4J00_03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_03105 PF00672 HAMP domain H4J00_03105 PF02743 Cache domain H4J00_03110 PF00072 Response regulator receiver domain H4J00_03110 PF04397 LytTr DNA-binding domain H4J00_03120 PF13520 Amino acid permease H4J00_03140 PF05649 Peptidase family M13 H4J00_03140 PF01431 Peptidase family M13 H4J00_03150 PF00248 Aldo/keto reductase family H4J00_03165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase H4J00_03175 PF03167 Uracil DNA glycosylase superfamily H4J00_03185 PF02469 Fasciclin domain H4J00_03190 PF00999 Sodium/hydrogen exchanger family H4J00_03195 PF00005 ABC transporter H4J00_03200 PF01061 ABC-2 type transporter H4J00_03215 PF04151 Bacterial pre-peptidase C-terminal domain H4J00_03215 PF00082 Subtilase family H4J00_03225 PF08448 PAS fold H4J00_03225 PF00512 His Kinase A (phospho-acceptor) domain H4J00_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_03225 PF00072 Response regulator receiver domain H4J00_03225 PF13188 PAS domain H4J00_03230 PF00072 Response regulator receiver domain H4J00_03230 PF00486 Transcriptional regulatory protein, C terminal H4J00_03250 PF13677 Membrane MotB of proton-channel complex MotA/MotB H4J00_03250 PF00691 OmpA family H4J00_03255 PF01618 MotA/TolQ/ExbB proton channel family H4J00_03265 PF01641 SelR domain H4J00_03275 PF01037 Lrp/AsnC ligand binding domain H4J00_03280 PF01266 FAD dependent oxidoreductase H4J00_03285 PF00842 Alanine racemase, C-terminal domain H4J00_03285 PF01168 Alanine racemase, N-terminal domain H4J00_03305 PF00989 PAS fold H4J00_03305 PF00512 His Kinase A (phospho-acceptor) domain H4J00_03305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_03320 PF07995 Glucose / Sorbosone dehydrogenase H4J00_03335 PF05175 Methyltransferase small domain H4J00_03335 PF08468 Methyltransferase small domain N-terminal H4J00_03340 PF01479 S4 domain H4J00_03340 PF00849 RNA pseudouridylate synthase H4J00_03345 PF13419 Haloacid dehalogenase-like hydrolase H4J00_03375 PF04461 Protein of unknown function (DUF520) H4J00_03380 PF00892 EamA-like transporter family H4J00_03385 PF00005 ABC transporter H4J00_03385 PF09383 NIL domain H4J00_03390 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_03395 PF03180 NLPA lipoprotein H4J00_03425 PF02817 e3 binding domain H4J00_03425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H4J00_03425 PF00364 Biotin-requiring enzyme H4J00_03435 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_03435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H4J00_03455 PF00119 ATP synthase A chain H4J00_03460 PF00137 ATP synthase subunit C H4J00_03465 PF00430 ATP synthase B/B' CF(0) H4J00_03470 PF00213 ATP synthase delta (OSCP) subunit H4J00_03475 PF00306 ATP synthase alpha/beta chain, C terminal domain H4J00_03475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H4J00_03475 PF02874 ATP synthase alpha/beta family, beta-barrel domain H4J00_03480 PF00231 ATP synthase H4J00_03485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H4J00_03485 PF02874 ATP synthase alpha/beta family, beta-barrel domain H4J00_03490 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H4J00_03495 PF01817 Chorismate mutase type II H4J00_03505 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_03505 PF14602 Hexapeptide repeat of succinyl-transferase H4J00_03505 PF12804 MobA-like NTP transferase domain H4J00_03510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_03510 PF00512 His Kinase A (phospho-acceptor) domain H4J00_03510 PF00989 PAS fold H4J00_03515 PF00158 Sigma-54 interaction domain H4J00_03515 PF00072 Response regulator receiver domain H4J00_03515 PF02954 Bacterial regulatory protein, Fis family H4J00_03520 PF00005 ABC transporter H4J00_03520 PF02687 FtsX-like permease family H4J00_03520 PF12704 MacB-like periplasmic core domain H4J00_03525 PF00005 ABC transporter H4J00_03525 PF02687 FtsX-like permease family H4J00_03525 PF12704 MacB-like periplasmic core domain H4J00_03530 PF00005 ABC transporter H4J00_03530 PF02687 FtsX-like permease family H4J00_03530 PF12704 MacB-like periplasmic core domain H4J00_03540 PF00005 ABC transporter H4J00_03545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_03550 PF01380 SIS domain H4J00_03575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H4J00_03585 PF00394 Multicopper oxidase H4J00_03585 PF07732 Multicopper oxidase H4J00_03585 PF07731 Multicopper oxidase H4J00_03600 PF01432 Peptidase family M3 H4J00_03610 PF02801 Beta-ketoacyl synthase, C-terminal domain H4J00_03610 PF00109 Beta-ketoacyl synthase, N-terminal domain H4J00_03615 PF07977 FabA-like domain H4J00_03620 PF00817 impB/mucB/samB family H4J00_03620 PF11799 impB/mucB/samB family C-terminal domain H4J00_03625 PF13419 Haloacid dehalogenase-like hydrolase H4J00_03635 PF13185 GAF domain H4J00_03650 PF01242 6-pyruvoyl tetrahydropterin synthase H4J00_03655 PF00270 DEAD/DEAH box helicase H4J00_03655 PF00271 Helicase conserved C-terminal domain H4J00_03665 PF14497 Glutathione S-transferase, C-terminal domain H4J00_03665 PF02798 Glutathione S-transferase, N-terminal domain H4J00_03670 PF00437 Type II/IV secretion system protein H4J00_03690 PF00571 CBS domain H4J00_03690 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_03695 PF01053 Cys/Met metabolism PLP-dependent enzyme H4J00_03705 PF00005 ABC transporter H4J00_03710 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_03715 PF00535 Glycosyl transferase family 2 H4J00_03720 PF05045 Rhamnan synthesis protein F H4J00_03720 PF14307 Glycosyltransferase WbsX H4J00_03730 PF01209 ubiE/COQ5 methyltransferase family H4J00_03745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H4J00_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_03750 PF01370 NAD dependent epimerase/dehydratase family H4J00_03760 PF00106 short chain dehydrogenase H4J00_03765 PF01565 FAD binding domain H4J00_03765 PF04030 D-arabinono-1,4-lactone oxidase H4J00_03770 PF01040 UbiA prenyltransferase family H4J00_03780 PF00766 Electron transfer flavoprotein FAD-binding domain H4J00_03780 PF01012 Electron transfer flavoprotein domain H4J00_03785 PF01012 Electron transfer flavoprotein domain H4J00_03790 PF16363 GDP-mannose 4,6 dehydratase H4J00_03795 PF00483 Nucleotidyl transferase H4J00_03800 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase H4J00_03805 PF04321 RmlD substrate binding domain H4J00_03810 PF00483 Nucleotidyl transferase H4J00_03810 PF01050 Mannose-6-phosphate isomerase H4J00_03815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H4J00_03815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H4J00_03815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H4J00_03815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H4J00_03820 PF01144 Coenzyme A transferase H4J00_03825 PF01144 Coenzyme A transferase H4J00_03830 PF14307 Glycosyltransferase WbsX H4J00_03830 PF05045 Rhamnan synthesis protein F H4J00_03850 PF02470 MlaD protein H4J00_03850 PF03886 ABC-type transport auxiliary lipoprotein component H4J00_03855 PF00005 ABC transporter H4J00_03860 PF02405 Permease MlaE H4J00_03870 PF00816 H-NS histone family H4J00_03875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H4J00_03875 PF03129 Anticodon binding domain H4J00_03875 PF04073 Aminoacyl-tRNA editing domain H4J00_03885 PF01066 CDP-alcohol phosphatidyltransferase H4J00_03900 PF00544 Pectate lyase H4J00_03905 PF01464 Transglycosylase SLT domain H4J00_03905 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain H4J00_03915 PF08264 Anticodon-binding domain of tRNA H4J00_03915 PF00133 tRNA synthetases class I (I, L, M and V) H4J00_03915 PF10458 Valyl tRNA synthetase tRNA binding arm H4J00_03930 PF02789 Cytosol aminopeptidase family, N-terminal domain H4J00_03930 PF00883 Cytosol aminopeptidase family, catalytic domain H4J00_03940 PF03739 Lipopolysaccharide export system permease LptF/LptG H4J00_03955 PF02899 Phage integrase, N-terminal SAM-like domain H4J00_03955 PF00589 Phage integrase family H4J00_03960 PF10411 Disulfide bond isomerase protein N-terminus H4J00_03960 PF13098 Thioredoxin-like domain H4J00_03965 PF02769 AIR synthase related protein, C-terminal domain H4J00_03965 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H4J00_03965 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H4J00_03970 PF05662 Coiled stalk of trimeric autotransporter adhesin H4J00_03970 PF05658 Head domain of trimeric autotransporter adhesin H4J00_03970 PF03895 YadA-like membrane anchor domain H4J00_03970 PF13018 Extended Signal Peptide of Type V secretion system H4J00_03975 PF00082 Subtilase family H4J00_03975 PF04151 Bacterial pre-peptidase C-terminal domain H4J00_03980 PF00437 Type II/IV secretion system protein H4J00_03980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H4J00_03990 PF00482 Type II secretion system (T2SS), protein F H4J00_03995 PF08334 Type II secretion system (T2SS), protein G H4J00_04000 PF12019 Type II transport protein GspH H4J00_04005 PF07963 Prokaryotic N-terminal methylation motif H4J00_04015 PF03934 Type II secretion system (T2SS), protein K H4J00_04020 PF05137 Fimbrial assembly protein (PilN) H4J00_04025 PF10741 Type II secretion system (T2SS), protein M subtype b H4J00_04035 PF00263 Bacterial type II and III secretion system protein H4J00_04035 PF03958 Bacterial type II/III secretion system short domain H4J00_04050 PF00392 Bacterial regulatory proteins, gntR family H4J00_04050 PF07702 UTRA domain H4J00_04060 PF00593 TonB dependent receptor H4J00_04060 PF07715 TonB-dependent Receptor Plug Domain H4J00_04100 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H4J00_04100 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H4J00_04110 PF01609 Transposase DDE domain H4J00_04110 PF05598 Transposase domain (DUF772) H4J00_04125 PF03960 ArsC family H4J00_04130 PF01327 Polypeptide deformylase H4J00_04165 PF01979 Amidohydrolase family H4J00_04170 PF01979 Amidohydrolase family H4J00_04190 PF00462 Glutaredoxin H4J00_04195 PF01522 Polysaccharide deacetylase H4J00_04215 PF00155 Aminotransferase class I and II H4J00_04220 PF03193 RsgA GTPase H4J00_04235 PF00128 Alpha amylase, catalytic domain H4J00_04255 PF00356 Bacterial regulatory proteins, lacI family H4J00_04260 PF00106 short chain dehydrogenase H4J00_04265 PF03600 Citrate transporter H4J00_04275 PF00072 Response regulator receiver domain H4J00_04275 PF00486 Transcriptional regulatory protein, C terminal H4J00_04280 PF00512 His Kinase A (phospho-acceptor) domain H4J00_04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_04280 PF08521 Two-component sensor kinase N-terminal H4J00_04290 PF00196 Bacterial regulatory proteins, luxR family H4J00_04290 PF00072 Response regulator receiver domain H4J00_04305 PF03466 LysR substrate binding domain H4J00_04305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_04315 PF07690 Major Facilitator Superfamily H4J00_04320 PF00512 His Kinase A (phospho-acceptor) domain H4J00_04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_04330 PF00375 Sodium:dicarboxylate symporter family H4J00_04335 PF00390 Malic enzyme, N-terminal domain H4J00_04335 PF03949 Malic enzyme, NAD binding domain H4J00_04335 PF01515 Phosphate acetyl/butaryl transferase H4J00_04360 PF03279 Bacterial lipid A biosynthesis acyltransferase H4J00_04365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H4J00_04370 PF05598 Transposase domain (DUF772) H4J00_04370 PF01609 Transposase DDE domain H4J00_04375 PF02321 Outer membrane efflux protein H4J00_04395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_04400 PF00330 Aconitase family (aconitate hydratase) H4J00_04405 PF00694 Aconitase C-terminal domain H4J00_04410 PF08241 Methyltransferase domain H4J00_04415 PF00180 Isocitrate/isopropylmalate dehydrogenase H4J00_04420 PF08502 LeuA allosteric (dimerisation) domain H4J00_04420 PF00682 HMGL-like H4J00_04425 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_04435 PF00205 Thiamine pyrophosphate enzyme, central domain H4J00_04435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H4J00_04435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H4J00_04440 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H4J00_04440 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H4J00_04450 PF13667 ThiC-associated domain H4J00_04450 PF01964 Radical SAM ThiC family H4J00_04455 PF18500 CadC C-terminal domain 1 H4J00_04455 PF00486 Transcriptional regulatory protein, C terminal H4J00_04460 PF12833 Helix-turn-helix domain H4J00_04465 PF00593 TonB dependent receptor H4J00_04465 PF07715 TonB-dependent Receptor Plug Domain H4J00_04480 PF00719 Inorganic pyrophosphatase H4J00_04490 PF03030 Inorganic H+ pyrophosphatase H4J00_04515 PF00365 Phosphofructokinase H4J00_04525 PF01225 Mur ligase family, catalytic domain H4J00_04525 PF02875 Mur ligase family, glutamate ligase domain H4J00_04525 PF08245 Mur ligase middle domain H4J00_04535 PF01062 Bestrophin, RFP-TM, chloride channel H4J00_04575 PF00027 Cyclic nucleotide-binding domain H4J00_04575 PF00520 Ion transport protein H4J00_04580 PF00202 Aminotransferase class-III H4J00_04605 PF01593 Flavin containing amine oxidoreductase H4J00_04610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H4J00_04610 PF00034 Cytochrome c H4J00_04625 PF00127 Copper binding proteins, plastocyanin/azurin family H4J00_04635 PF00202 Aminotransferase class-III H4J00_04645 PF02581 Thiamine monophosphate synthase H4J00_04650 PF00301 Rubredoxin H4J00_04655 PF13369 Transglutaminase-like superfamily H4J00_04665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H4J00_04675 PF01812 5-formyltetrahydrofolate cyclo-ligase family H4J00_04685 PF05164 Cell division protein ZapA H4J00_04695 PF03695 Uncharacterised protein family (UPF0149) H4J00_04700 PF05195 Aminopeptidase P, N-terminal domain H4J00_04700 PF00557 Metallopeptidase family M24 H4J00_04715 PF00557 Metallopeptidase family M24 H4J00_04730 PF06969 HemN C-terminal domain H4J00_04730 PF04055 Radical SAM superfamily H4J00_04735 PF01725 Ham1 family H4J00_04740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H4J00_04745 PF01138 3' exoribonuclease family, domain 1 H4J00_04745 PF03725 3' exoribonuclease family, domain 2 H4J00_04750 PF08340 Domain of unknown function (DUF1732) H4J00_04750 PF03755 YicC-like family, N-terminal region H4J00_04755 PF00625 Guanylate kinase H4J00_04765 PF01192 RNA polymerase Rpb6 H4J00_04770 PF02824 TGS domain H4J00_04770 PF04607 Region found in RelA / SpoT proteins H4J00_04770 PF13291 ACT domain H4J00_04775 PF01042 Endoribonuclease L-PSP H4J00_04780 PF00270 DEAD/DEAH box helicase H4J00_04780 PF00271 Helicase conserved C-terminal domain H4J00_04780 PF17191 RecG wedge domain H4J00_04785 PF01156 Inosine-uridine preferring nucleoside hydrolase H4J00_04790 PF01197 Ribosomal protein L31 H4J00_04795 PF00285 Citrate synthase, C-terminal domain H4J00_04810 PF17092 Penicillin-binding protein OB-like domain H4J00_04810 PF00912 Transglycosylase H4J00_04810 PF00905 Penicillin binding protein transpeptidase domain H4J00_04815 PF11104 Type IV pilus assembly protein PilM; H4J00_04820 PF05137 Fimbrial assembly protein (PilN) H4J00_04825 PF04350 Pilus assembly protein, PilO H4J00_04830 PF04351 Pilus assembly protein, PilP H4J00_04835 PF11741 AMIN domain H4J00_04835 PF00263 Bacterial type II and III secretion system protein H4J00_04835 PF03958 Bacterial type II/III secretion system short domain H4J00_04835 PF07660 Secretin and TonB N terminus short domain H4J00_04845 PF07726 ATPase family associated with various cellular activities (AAA) H4J00_04845 PF17863 AAA lid domain H4J00_04865 PF00092 von Willebrand factor type A domain H4J00_04865 PF07584 Aerotolerance regulator N-terminal H4J00_04900 PF00456 Transketolase, thiamine diphosphate binding domain H4J00_04900 PF02780 Transketolase, C-terminal domain H4J00_04900 PF02779 Transketolase, pyrimidine binding domain H4J00_05000 PF03459 TOBE domain H4J00_05000 PF00005 ABC transporter H4J00_05005 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_05015 PF04273 Putative phosphatase (DUF442) H4J00_05015 PF00753 Metallo-beta-lactamase superfamily H4J00_05025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H4J00_05025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H4J00_05040 PF00162 Phosphoglycerate kinase H4J00_05045 PF13419 Haloacid dehalogenase-like hydrolase H4J00_05050 PF02887 Pyruvate kinase, alpha/beta domain H4J00_05050 PF00224 Pyruvate kinase, barrel domain H4J00_05055 PF00274 Fructose-bisphosphate aldolase class-I H4J00_05060 PF01661 Macro domain H4J00_05070 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_05075 PF10414 Sirohaem synthase dimerisation region H4J00_05075 PF14824 Sirohaem biosynthesis protein central H4J00_05075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H4J00_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_05080 PF03466 LysR substrate binding domain H4J00_05100 PF00072 Response regulator receiver domain H4J00_05100 PF01627 Hpt domain H4J00_05100 PF00512 His Kinase A (phospho-acceptor) domain H4J00_05100 PF00672 HAMP domain H4J00_05100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05120 PF01507 Phosphoadenosine phosphosulfate reductase family H4J00_05125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H4J00_05125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H4J00_05130 PF00667 FAD binding domain H4J00_05130 PF00258 Flavodoxin H4J00_05130 PF00175 Oxidoreductase NAD-binding domain H4J00_05135 PF01507 Phosphoadenosine phosphosulfate reductase family H4J00_05140 PF00009 Elongation factor Tu GTP binding domain H4J00_05145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_05145 PF00529 HlyD membrane-fusion protein of T1SS H4J00_05150 PF00873 AcrB/AcrD/AcrF family H4J00_05155 PF11838 ERAP1-like C-terminal domain H4J00_05155 PF01433 Peptidase family M1 domain H4J00_05180 PF00588 SpoU rRNA Methylase family H4J00_05180 PF08032 RNA 2'-O ribose methyltransferase substrate binding H4J00_05205 PF01741 Large-conductance mechanosensitive channel, MscL H4J00_05210 PF01557 Fumarylacetoacetate (FAA) hydrolase family H4J00_05230 PF03600 Citrate transporter H4J00_05230 PF02080 TrkA-C domain H4J00_05235 PF02390 Putative methyltransferase H4J00_05240 PF05690 Thiazole biosynthesis protein ThiG H4J00_05250 PF03797 Autotransporter beta-domain H4J00_05250 PF00657 GDSL-like Lipase/Acylhydrolase H4J00_05260 PF01609 Transposase DDE domain H4J00_05260 PF05598 Transposase domain (DUF772) H4J00_05280 PF00709 Adenylosuccinate synthetase H4J00_05290 PF04002 RadC-like JAB domain H4J00_05310 PF07693 KAP family P-loop domain H4J00_05325 PF01026 TatD related DNase H4J00_05345 PF01609 Transposase DDE domain H4J00_05345 PF05598 Transposase domain (DUF772) H4J00_05385 PF00128 Alpha amylase, catalytic domain H4J00_05385 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H4J00_05390 PF18030 RimK PreATP-grasp domain H4J00_05390 PF08443 RimK-like ATP-grasp domain H4J00_05400 PF00072 Response regulator receiver domain H4J00_05400 PF00486 Transcriptional regulatory protein, C terminal H4J00_05405 PF11808 Phosphate regulon sensor protein PhoR H4J00_05405 PF00989 PAS fold H4J00_05405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05405 PF00512 His Kinase A (phospho-acceptor) domain H4J00_05425 PF01121 Dephospho-CoA kinase H4J00_05430 PF01478 Type IV leader peptidase family H4J00_05430 PF06750 Bacterial Peptidase A24 N-terminal domain H4J00_05435 PF00482 Type II secretion system (T2SS), protein F H4J00_05440 PF00114 Pilin (bacterial filament) H4J00_05440 PF07963 Prokaryotic N-terminal methylation motif H4J00_05445 PF08019 Phosphoethanolamine transferase EptA/EptB H4J00_05445 PF00884 Sulfatase H4J00_05460 PF00437 Type II/IV secretion system protein H4J00_05460 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H4J00_05465 PF02661 Fic/DOC family H4J00_05465 PF17841 BID domain of Bartonella effector protein (Bep) H4J00_05475 PF00158 Sigma-54 interaction domain H4J00_05475 PF00072 Response regulator receiver domain H4J00_05475 PF02954 Bacterial regulatory protein, Fis family H4J00_05480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05480 PF00512 His Kinase A (phospho-acceptor) domain H4J00_05485 PF08442 ATP-grasp domain H4J00_05485 PF00549 CoA-ligase H4J00_05490 PF02629 CoA binding domain H4J00_05490 PF00549 CoA-ligase H4J00_05505 PF00795 Carbon-nitrogen hydrolase H4J00_05505 PF02540 NAD synthase H4J00_05510 PF13525 Outer membrane lipoprotein H4J00_05515 PF00849 RNA pseudouridylate synthase H4J00_05520 PF02578 Multi-copper polyphenol oxidoreductase laccase H4J00_05530 PF04134 Protein of unknown function, DUF393 H4J00_05535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_05535 PF02203 Tar ligand binding domain homologue H4J00_05535 PF00672 HAMP domain H4J00_05540 PF01011 PQQ enzyme repeat H4J00_05545 PF00982 Glycosyltransferase family 20 H4J00_05550 PF00723 Glycosyl hydrolases family 15 H4J00_05555 PF02358 Trehalose-phosphatase H4J00_05565 PF07715 TonB-dependent Receptor Plug Domain H4J00_05565 PF00593 TonB dependent receptor H4J00_05595 PF04376 Arginine-tRNA-protein transferase, N terminus H4J00_05595 PF04377 Arginine-tRNA-protein transferase, C terminus H4J00_05610 PF08281 Sigma-70, region 4 H4J00_05610 PF04542 Sigma-70 region 2 H4J00_05625 PF00378 Enoyl-CoA hydratase/isomerase H4J00_05640 PF00005 ABC transporter H4J00_05640 PF17755 UvrA DNA-binding domain H4J00_05640 PF17760 UvrA interaction domain H4J00_05645 PF00829 Ribosomal prokaryotic L21 protein H4J00_05650 PF01016 Ribosomal L27 protein H4J00_05655 PF01018 GTP1/OBG H4J00_05655 PF01926 50S ribosome-binding GTPase H4J00_05660 PF01649 Ribosomal protein S20 H4J00_05665 PF03023 Lipid II flippase MurJ H4J00_05670 PF06574 FAD synthetase H4J00_05670 PF01687 Riboflavin kinase H4J00_05675 PF08264 Anticodon-binding domain of tRNA H4J00_05675 PF00133 tRNA synthetases class I (I, L, M and V) H4J00_05675 PF06827 Zinc finger found in FPG and IleRS H4J00_05680 PF01252 Signal peptidase (SPase) II H4J00_05685 PF02401 LytB protein H4J00_05695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H4J00_05695 PF06481 COX Aromatic Rich Motif H4J00_05700 PF00115 Cytochrome C and Quinol oxidase polypeptide I H4J00_05705 PF00510 Cytochrome c oxidase subunit III H4J00_05710 PF03626 Prokaryotic Cytochrome C oxidase subunit IV H4J00_05720 PF06715 Gp5 C-terminal repeat (3 copies) H4J00_05720 PF04717 Type VI secretion system, phage-baseplate injector H4J00_05765 PF00665 Integrase core domain H4J00_05765 PF13936 Helix-turn-helix domain H4J00_05775 PF01609 Transposase DDE domain H4J00_05775 PF05598 Transposase domain (DUF772) H4J00_05790 PF18073 Rubredoxin metal binding domain H4J00_05815 PF12833 Helix-turn-helix domain H4J00_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05820 PF00183 Hsp90 protein H4J00_05830 PF08678 Rsbr N terminal H4J00_05830 PF01740 STAS domain H4J00_05835 PF01740 STAS domain H4J00_05840 PF13581 Histidine kinase-like ATPase domain H4J00_05850 PF01627 Hpt domain H4J00_05850 PF00512 His Kinase A (phospho-acceptor) domain H4J00_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05850 PF00072 Response regulator receiver domain H4J00_05850 PF00672 HAMP domain H4J00_05850 PF17149 Periplasmic sensor domain found in signal transduction proteins H4J00_05855 PF13188 PAS domain H4J00_05855 PF00072 Response regulator receiver domain H4J00_05855 PF00512 His Kinase A (phospho-acceptor) domain H4J00_05855 PF08448 PAS fold H4J00_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_05870 PF06964 Alpha-L-arabinofuranosidase C-terminal domain H4J00_05875 PF01263 Aldose 1-epimerase H4J00_05880 PF01578 Cytochrome C assembly protein H4J00_05885 PF00448 SRP54-type protein, GTPase domain H4J00_05885 PF02881 SRP54-type protein, helical bundle domain H4J00_05885 PF02978 Signal peptide binding domain H4J00_05895 PF03060 Nitronate monooxygenase H4J00_05905 PF00886 Ribosomal protein S16 H4J00_05910 PF01782 RimM N-terminal domain H4J00_05910 PF05239 PRC-barrel domain H4J00_05915 PF01746 tRNA (Guanine-1)-methyltransferase H4J00_05920 PF01245 Ribosomal protein L19 H4J00_05930 PF01554 MatE H4J00_05935 PF01479 S4 domain H4J00_05940 PF00141 Peroxidase H4J00_05950 PF05188 MutS domain II H4J00_05950 PF00488 MutS domain V H4J00_05950 PF05190 MutS family domain IV H4J00_05950 PF01624 MutS domain I H4J00_05950 PF05192 MutS domain III H4J00_05960 PF01541 GIY-YIG catalytic domain H4J00_05965 PF07724 AAA domain (Cdc48 subfamily) H4J00_05965 PF17871 AAA lid domain H4J00_05965 PF02861 Clp amino terminal domain, pathogenicity island component H4J00_05965 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_05965 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_05995 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H4J00_06000 PF02277 Phosphoribosyltransferase H4J00_06010 PF02654 Cobalamin-5-phosphate synthase H4J00_06020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H4J00_06020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H4J00_06025 PF04183 IucA / IucC family H4J00_06025 PF06276 Ferric iron reductase FhuF-like transporter H4J00_06030 PF07690 Major Facilitator Superfamily H4J00_06035 PF04183 IucA / IucC family H4J00_06035 PF06276 Ferric iron reductase FhuF-like transporter H4J00_06045 PF07715 TonB-dependent Receptor Plug Domain H4J00_06045 PF07660 Secretin and TonB N terminus short domain H4J00_06045 PF00593 TonB dependent receptor H4J00_06060 PF02254 TrkA-N domain H4J00_06060 PF00999 Sodium/hydrogen exchanger family H4J00_06070 PF00593 TonB dependent receptor H4J00_06070 PF07715 TonB-dependent Receptor Plug Domain H4J00_06075 PF00593 TonB dependent receptor H4J00_06075 PF07715 TonB-dependent Receptor Plug Domain H4J00_06085 PF00593 TonB dependent receptor H4J00_06085 PF07715 TonB-dependent Receptor Plug Domain H4J00_06090 PF00005 ABC transporter H4J00_06090 PF12848 ABC transporter H4J00_06105 PF03466 LysR substrate binding domain H4J00_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_06115 PF13472 GDSL-like Lipase/Acylhydrolase family H4J00_06115 PF07859 alpha/beta hydrolase fold H4J00_06125 PF04185 Phosphoesterase family H4J00_06125 PF05506 Domain of unknown function (DUF756) H4J00_06130 PF07690 Major Facilitator Superfamily H4J00_06145 PF02938 GAD domain H4J00_06145 PF00152 tRNA synthetases class II (D, K and N) H4J00_06145 PF01336 OB-fold nucleic acid binding domain H4J00_06160 PF01709 Transcriptional regulator H4J00_06165 PF02075 Crossover junction endodeoxyribonuclease RuvC H4J00_06170 PF01330 RuvA N terminal domain H4J00_06170 PF07499 RuvA, C-terminal domain H4J00_06175 PF02705 K+ potassium transporter H4J00_06180 PF05491 RuvB C-terminal winged helix domain H4J00_06180 PF05496 Holliday junction DNA helicase RuvB P-loop domain H4J00_06180 PF17864 RuvB AAA lid domain H4J00_06185 PF03061 Thioesterase superfamily H4J00_06190 PF01618 MotA/TolQ/ExbB proton channel family H4J00_06195 PF02472 Biopolymer transport protein ExbD/TolR H4J00_06205 PF04052 TolB amino-terminal domain H4J00_06205 PF07676 WD40-like Beta Propeller Repeat H4J00_06210 PF00691 OmpA family H4J00_06220 PF04055 Radical SAM superfamily H4J00_06230 PF11799 impB/mucB/samB family C-terminal domain H4J00_06230 PF11798 IMS family HHH motif H4J00_06230 PF13438 Domain of unknown function (DUF4113) H4J00_06230 PF00817 impB/mucB/samB family H4J00_06260 PF01555 DNA methylase H4J00_06315 PF00182 Chitinase class I H4J00_06490 PF06508 Queuosine biosynthesis protein QueC H4J00_06520 PF00849 RNA pseudouridylate synthase H4J00_06520 PF01479 S4 domain H4J00_06535 PF09382 RQC domain H4J00_06535 PF00270 DEAD/DEAH box helicase H4J00_06535 PF00271 Helicase conserved C-terminal domain H4J00_06535 PF00570 HRDC domain H4J00_06535 PF16124 RecQ zinc-binding H4J00_06540 PF00210 Ferritin-like domain H4J00_06545 PF00270 DEAD/DEAH box helicase H4J00_06545 PF04408 Helicase associated domain (HA2) H4J00_06545 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H4J00_06545 PF00271 Helicase conserved C-terminal domain H4J00_06545 PF11898 Domain of unknown function (DUF3418) H4J00_06555 PF02685 Glucokinase H4J00_06560 PF02685 Glucokinase H4J00_06580 PF13186 Iron-sulfur cluster-binding domain H4J00_06580 PF04055 Radical SAM superfamily H4J00_06585 PF03070 TENA/THI-4/PQQC family H4J00_06590 PF12706 Beta-lactamase superfamily domain H4J00_06595 PF08042 PqqA family H4J00_06600 PF13291 ACT domain H4J00_06600 PF04607 Region found in RelA / SpoT proteins H4J00_06600 PF02824 TGS domain H4J00_06610 PF00535 Glycosyl transferase family 2 H4J00_06615 PF00912 Transglycosylase H4J00_06615 PF00905 Penicillin binding protein transpeptidase domain H4J00_06615 PF14814 Bifunctional transglycosylase second domain H4J00_06625 PF13307 Helicase C-terminal domain H4J00_06625 PF04851 Type III restriction enzyme, res subunit H4J00_06630 PF00814 Glycoprotease family H4J00_06645 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H4J00_06645 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H4J00_06650 PF00072 Response regulator receiver domain H4J00_06655 PF00072 Response regulator receiver domain H4J00_06660 PF01584 CheW-like domain H4J00_06665 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H4J00_06665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_06670 PF01584 CheW-like domain H4J00_06670 PF02895 Signal transducing histidine kinase, homodimeric domain H4J00_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_06670 PF01627 Hpt domain H4J00_06670 PF00072 Response regulator receiver domain H4J00_06685 PF13302 Acetyltransferase (GNAT) domain H4J00_06695 PF12450 von Willebrand factor H4J00_06695 PF12034 Domain of unknown function (DUF3520) H4J00_06695 PF00092 von Willebrand factor type A domain H4J00_06700 PF01112 Asparaginase H4J00_06705 PF03932 CutC family H4J00_06735 PF01301 Glycosyl hydrolases family 35 H4J00_06745 PF07971 Glycosyl hydrolase family 92 H4J00_06745 PF17678 Glycosyl hydrolase family 92 N-terminal domain H4J00_06760 PF13936 Helix-turn-helix domain H4J00_06760 PF00665 Integrase core domain H4J00_06770 PF00664 ABC transporter transmembrane region H4J00_06770 PF00005 ABC transporter H4J00_06770 PF03412 Peptidase C39 family H4J00_06775 PF07691 PA14 domain H4J00_06775 PF01915 Glycosyl hydrolase family 3 C-terminal domain H4J00_06775 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_06775 PF14310 Fibronectin type III-like domain H4J00_06785 PF00728 Glycosyl hydrolase family 20, catalytic domain H4J00_06785 PF02838 Glycosyl hydrolase family 20, domain 2 H4J00_06785 PF07691 PA14 domain H4J00_06790 PF01476 LysM domain H4J00_06790 PF00704 Glycosyl hydrolases family 18 H4J00_06805 PF02685 Glucokinase H4J00_06810 PF04452 RNA methyltransferase H4J00_06815 PF00202 Aminotransferase class-III H4J00_06820 PF00293 NUDIX domain H4J00_06825 PF00459 Inositol monophosphatase family H4J00_06830 PF03819 MazG nucleotide pyrophosphohydrolase domain H4J00_06835 PF02694 Uncharacterised BCR, YnfA/UPF0060 family H4J00_06845 PF01145 SPFH domain / Band 7 family H4J00_06845 PF16200 C-terminal region of band_7 H4J00_06855 PF08669 Glycine cleavage T-protein C-terminal barrel domain H4J00_06855 PF01571 Aminomethyltransferase folate-binding domain H4J00_06860 PF01597 Glycine cleavage H-protein H4J00_06895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_06895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_06895 PF09317 Domain of unknown function (DUF1974) H4J00_06905 PF00440 Bacterial regulatory proteins, tetR family H4J00_06910 PF07715 TonB-dependent Receptor Plug Domain H4J00_06910 PF00593 TonB dependent receptor H4J00_06920 PF01430 Hsp33 protein H4J00_06925 PF00912 Transglycosylase H4J00_06930 PF00535 Glycosyl transferase family 2 H4J00_06935 PF00478 IMP dehydrogenase / GMP reductase domain H4J00_06935 PF00571 CBS domain H4J00_06945 PF03006 Haemolysin-III related H4J00_06950 PF00009 Elongation factor Tu GTP binding domain H4J00_06950 PF16658 Class II release factor RF3, C-terminal domain H4J00_06955 PF01476 LysM domain H4J00_06955 PF01551 Peptidase family M23 H4J00_06955 PF08525 Opacity-associated protein A N-terminal motif H4J00_06960 PF00561 alpha/beta hydrolase fold H4J00_06965 PF01053 Cys/Met metabolism PLP-dependent enzyme H4J00_06975 PF03315 Serine dehydratase beta chain H4J00_06975 PF03313 Serine dehydratase alpha chain H4J00_07000 PF04264 YceI-like domain H4J00_07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_07005 PF00512 His Kinase A (phospho-acceptor) domain H4J00_07005 PF01627 Hpt domain H4J00_07005 PF00072 Response regulator receiver domain H4J00_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_07010 PF00072 Response regulator receiver domain H4J00_07010 PF09308 LuxQ, periplasmic H4J00_07010 PF00512 His Kinase A (phospho-acceptor) domain H4J00_07015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_07015 PF00512 His Kinase A (phospho-acceptor) domain H4J00_07015 PF01627 Hpt domain H4J00_07015 PF00072 Response regulator receiver domain H4J00_07015 PF17149 Periplasmic sensor domain found in signal transduction proteins H4J00_07015 PF00672 HAMP domain H4J00_07025 PF17149 Periplasmic sensor domain found in signal transduction proteins H4J00_07025 PF00672 HAMP domain H4J00_07025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_07025 PF00512 His Kinase A (phospho-acceptor) domain H4J00_07025 PF01627 Hpt domain H4J00_07025 PF00072 Response regulator receiver domain H4J00_07050 PF07745 Glycosyl hydrolase family 53 H4J00_07060 PF01381 Helix-turn-helix H4J00_07060 PF09856 Predicted transcriptional regulator (DUF2083) H4J00_07060 PF06114 IrrE N-terminal-like domain H4J00_07065 PF00171 Aldehyde dehydrogenase family H4J00_07070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_07070 PF02770 Acyl-CoA dehydrogenase, middle domain H4J00_07070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_07075 PF00378 Enoyl-CoA hydratase/isomerase H4J00_07080 PF00378 Enoyl-CoA hydratase/isomerase H4J00_07080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H4J00_07080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H4J00_07085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H4J00_07085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H4J00_07090 PF01545 Cation efflux family H4J00_07095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H4J00_07095 PF00378 Enoyl-CoA hydratase/isomerase H4J00_07095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H4J00_07100 PF04542 Sigma-70 region 2 H4J00_07100 PF08281 Sigma-70, region 4 H4J00_07110 PF13180 PDZ domain H4J00_07115 PF03144 Elongation factor Tu domain 2 H4J00_07115 PF00679 Elongation factor G C-terminus H4J00_07115 PF00009 Elongation factor Tu GTP binding domain H4J00_07115 PF06421 GTP-binding protein LepA C-terminus H4J00_07120 PF10502 Signal peptidase, peptidase S26 H4J00_07130 PF14622 Ribonuclease-III-like H4J00_07130 PF00035 Double-stranded RNA binding motif H4J00_07135 PF07650 KH domain H4J00_07135 PF01926 50S ribosome-binding GTPase H4J00_07140 PF02565 Recombination protein O C terminal H4J00_07140 PF11967 Recombination protein O N terminal H4J00_07150 PF05958 tRNA (Uracil-5-)-methyltransferase H4J00_07155 PF01928 CYTH domain H4J00_07160 PF01323 DSBA-like thioredoxin domain H4J00_07165 PF01593 Flavin containing amine oxidoreductase H4J00_07170 PF04244 Deoxyribodipyrimidine photo-lyase-related protein H4J00_07175 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_07180 PF00156 Phosphoribosyl transferase domain H4J00_07185 PF01048 Phosphorylase superfamily H4J00_07190 PF00313 'Cold-shock' DNA-binding domain H4J00_07210 PF00270 DEAD/DEAH box helicase H4J00_07210 PF08494 DEAD/H associated H4J00_07210 PF00271 Helicase conserved C-terminal domain H4J00_07215 PF04679 ATP dependent DNA ligase C terminal region H4J00_07215 PF01068 ATP dependent DNA ligase domain H4J00_07215 PF04675 DNA ligase N terminus H4J00_07225 PF04679 ATP dependent DNA ligase C terminal region H4J00_07225 PF01068 ATP dependent DNA ligase domain H4J00_07225 PF04675 DNA ligase N terminus H4J00_07240 PF00990 Diguanylate cyclase, GGDEF domain H4J00_07255 PF02803 Thiolase, C-terminal domain H4J00_07255 PF00108 Thiolase, N-terminal domain H4J00_07260 PF12951 Passenger-associated-transport-repeat H4J00_07260 PF03797 Autotransporter beta-domain H4J00_07260 PF00082 Subtilase family H4J00_07265 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain H4J00_07265 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase H4J00_07275 PF01863 Protein of unknown function DUF45 H4J00_07280 PF07043 Protein of unknown function (DUF1328) H4J00_07290 PF01258 Prokaryotic dksA/traR C4-type zinc finger H4J00_07330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H4J00_07340 PF03831 PhnA domain H4J00_07340 PF08274 PhnA Zinc-Ribbon H4J00_07350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H4J00_07355 PF07690 Major Facilitator Superfamily H4J00_07390 PF09924 Uncharacterised conserved protein (DUF2156) H4J00_07390 PF03706 Lysylphosphatidylglycerol synthase TM region H4J00_07400 PF01042 Endoribonuclease L-PSP H4J00_07445 PF04542 Sigma-70 region 2 H4J00_07445 PF04545 Sigma-70, region 4 H4J00_07460 PF04060 Putative Fe-S cluster H4J00_07470 PF01588 Putative tRNA binding domain H4J00_07470 PF09334 tRNA synthetases class I (M) H4J00_07480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H4J00_07485 PF00324 Amino acid permease H4J00_07490 PF02574 Homocysteine S-methyltransferase H4J00_07505 PF02592 Putative vitamin uptake transporter H4J00_07525 PF03551 Transcriptional regulator PadR-like family H4J00_07550 PF03653 Uncharacterised protein family (UPF0093) H4J00_07575 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H4J00_07580 PF01336 OB-fold nucleic acid binding domain H4J00_07580 PF02811 PHP domain H4J00_07580 PF07733 Bacterial DNA polymerase III alpha NTPase domain H4J00_07580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H4J00_07580 PF14579 Helix-hairpin-helix motif H4J00_07585 PF01351 Ribonuclease HII H4J00_07590 PF02684 Lipid-A-disaccharide synthetase H4J00_07595 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_07595 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H4J00_07600 PF07977 FabA-like domain H4J00_07605 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_07605 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H4J00_07610 PF05598 Transposase domain (DUF772) H4J00_07610 PF01609 Transposase DDE domain H4J00_07615 PF01103 Surface antigen H4J00_07615 PF07244 Surface antigen variable number repeat H4J00_07620 PF17820 PDZ domain H4J00_07620 PF02163 Peptidase family M50 H4J00_07625 PF13288 DXP reductoisomerase C-terminal domain H4J00_07625 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H4J00_07625 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H4J00_07635 PF01255 Putative undecaprenyl diphosphate synthase H4J00_07640 PF01765 Ribosome recycling factor H4J00_07645 PF00696 Amino acid kinase family H4J00_07650 PF00990 Diguanylate cyclase, GGDEF domain H4J00_07650 PF00072 Response regulator receiver domain H4J00_07655 PF00889 Elongation factor TS H4J00_07660 PF00318 Ribosomal protein S2 H4J00_07695 PF00557 Metallopeptidase family M24 H4J00_07700 PF08335 GlnD PII-uridylyltransferase H4J00_07700 PF01966 HD domain H4J00_07700 PF01909 Nucleotidyltransferase domain H4J00_07705 PF00132 Bacterial transferase hexapeptide (six repeats) H4J00_07705 PF14602 Hexapeptide repeat of succinyl-transferase H4J00_07705 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal H4J00_07715 PF03960 ArsC family H4J00_07725 PF01546 Peptidase family M20/M25/M40 H4J00_07725 PF07687 Peptidase dimerisation domain H4J00_07730 PF00733 Asparagine synthase H4J00_07730 PF13537 Glutamine amidotransferase domain H4J00_07740 PF07715 TonB-dependent Receptor Plug Domain H4J00_07740 PF00593 TonB dependent receptor H4J00_07745 PF01804 Penicillin amidase H4J00_07750 PF00210 Ferritin-like domain H4J00_07755 PF03989 DNA gyrase C-terminal domain, beta-propeller H4J00_07755 PF00521 DNA gyrase/topoisomerase IV, subunit A H4J00_07760 PF12833 Helix-turn-helix domain H4J00_07770 PF02321 Outer membrane efflux protein H4J00_07775 PF00529 HlyD membrane-fusion protein of T1SS H4J00_07775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_07780 PF07690 Major Facilitator Superfamily H4J00_07810 PF01915 Glycosyl hydrolase family 3 C-terminal domain H4J00_07810 PF14310 Fibronectin type III-like domain H4J00_07810 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_07845 PF12802 MarR family H4J00_07885 PF00255 Glutathione peroxidase H4J00_07890 PF00970 Oxidoreductase FAD-binding domain H4J00_07890 PF00175 Oxidoreductase NAD-binding domain H4J00_07895 PF00005 ABC transporter H4J00_07900 PF05681 Fumarate hydratase (Fumerase) H4J00_07900 PF05683 Fumarase C-terminus H4J00_07915 PF02253 Phospholipase A1 H4J00_07935 PF00313 'Cold-shock' DNA-binding domain H4J00_07950 PF00899 ThiF family H4J00_07955 PF01026 TatD related DNase H4J00_07970 PF02770 Acyl-CoA dehydrogenase, middle domain H4J00_07970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_07970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_07980 PF02798 Glutathione S-transferase, N-terminal domain H4J00_07980 PF00043 Glutathione S-transferase, C-terminal domain H4J00_07985 PF00733 Asparagine synthase H4J00_07985 PF13537 Glutamine amidotransferase domain H4J00_07990 PF03358 NADPH-dependent FMN reductase H4J00_07995 PF00772 DnaB-like helicase N terminal domain H4J00_07995 PF03796 DnaB-like helicase C terminal domain H4J00_08000 PF00875 DNA photolyase H4J00_08000 PF03441 FAD binding domain of DNA photolyase H4J00_08010 PF00691 OmpA family H4J00_08010 PF05736 OprF membrane domain H4J00_08025 PF00990 Diguanylate cyclase, GGDEF domain H4J00_08035 PF00990 Diguanylate cyclase, GGDEF domain H4J00_08050 PF10609 NUBPL iron-transfer P-loop NTPase H4J00_08055 PF00692 dUTPase H4J00_08075 PF01738 Dienelactone hydrolase family H4J00_08080 PF00919 Uncharacterized protein family UPF0004 H4J00_08080 PF04055 Radical SAM superfamily H4J00_08080 PF18693 TRAM domain H4J00_08095 PF01272 Transcription elongation factor, GreA/GreB, C-term H4J00_08095 PF03449 Transcription elongation factor, N-terminal H4J00_08115 PF05872 Bacterial protein of unknown function (DUF853) H4J00_08130 PF02666 Phosphatidylserine decarboxylase H4J00_08135 PF02630 SCO1/SenC H4J00_08140 PF05175 Methyltransferase small domain H4J00_08145 PF01264 Chorismate synthase H4J00_08150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H4J00_08150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H4J00_08155 PF01118 Semialdehyde dehydrogenase, NAD binding domain H4J00_08155 PF02774 Semialdehyde dehydrogenase, dimerisation domain H4J00_08175 PF01416 tRNA pseudouridine synthase H4J00_08180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H4J00_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_08185 PF03466 LysR substrate binding domain H4J00_08190 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_08200 PF00290 Tryptophan synthase alpha chain H4J00_08205 PF17848 Acetyl-coA carboxylase zinc finger domain H4J00_08205 PF01039 Carboxyl transferase domain H4J00_08210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H4J00_08210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H4J00_08210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H4J00_08210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H4J00_08225 PF00990 Diguanylate cyclase, GGDEF domain H4J00_08225 PF00563 EAL domain H4J00_08225 PF03707 Bacterial signalling protein N terminal repeat H4J00_08250 PF00121 Triosephosphate isomerase H4J00_08255 PF03840 Preprotein translocase SecG subunit H4J00_08265 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 H4J00_08270 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit H4J00_08275 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit H4J00_08280 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit H4J00_08290 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H4J00_08290 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region H4J00_08290 PF10531 SLBB domain H4J00_08295 PF00384 Molybdopterin oxidoreductase H4J00_08295 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H4J00_08295 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal H4J00_08300 PF00146 NADH dehydrogenase H4J00_08305 PF12838 4Fe-4S dicluster domain H4J00_08310 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 H4J00_08315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L H4J00_08320 PF00361 Proton-conducting membrane transporter H4J00_08320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus H4J00_08325 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus H4J00_08325 PF00361 Proton-conducting membrane transporter H4J00_08330 PF00361 Proton-conducting membrane transporter H4J00_08340 PF02576 RimP N-terminal domain H4J00_08340 PF17384 RimP C-terminal SH3 domain H4J00_08345 PF13184 NusA-like KH domain H4J00_08345 PF00575 S1 RNA binding domain H4J00_08345 PF08529 NusA N-terminal domain H4J00_08350 PF00009 Elongation factor Tu GTP binding domain H4J00_08350 PF11987 Translation-initiation factor 2 H4J00_08350 PF08364 Bacterial translation initiation factor IF-2 associated region H4J00_08350 PF04760 Translation initiation factor IF-2, N-terminal region H4J00_08355 PF02033 Ribosome-binding factor A H4J00_08360 PF09157 Pseudouridine synthase II TruB, C-terminal H4J00_08360 PF01509 TruB family pseudouridylate synthase (N terminal domain) H4J00_08360 PF16198 tRNA pseudouridylate synthase B C-terminal domain H4J00_08365 PF00312 Ribosomal protein S15 H4J00_08370 PF00575 S1 RNA binding domain H4J00_08370 PF03725 3' exoribonuclease family, domain 2 H4J00_08370 PF00013 KH domain H4J00_08370 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H4J00_08370 PF01138 3' exoribonuclease family, domain 1 H4J00_08380 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H4J00_08380 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H4J00_08390 PF00731 AIR carboxylase H4J00_08395 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H4J00_08395 PF02222 ATP-grasp domain H4J00_08400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H4J00_08400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H4J00_08405 PF00462 Glutaredoxin H4J00_08415 PF01914 MarC family integral membrane protein H4J00_08425 PF00593 TonB dependent receptor H4J00_08430 PF11892 Domain of unknown function (DUF3412) H4J00_08430 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases H4J00_08430 PF03641 Possible lysine decarboxylase H4J00_08435 PF07963 Prokaryotic N-terminal methylation motif H4J00_08435 PF12019 Type II transport protein GspH H4J00_08455 PF05567 Neisseria PilC beta-propeller domain H4J00_08460 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor H4J00_08460 PF07963 Prokaryotic N-terminal methylation motif H4J00_08525 PF02899 Phage integrase, N-terminal SAM-like domain H4J00_08525 PF00589 Phage integrase family H4J00_08530 PF00114 Pilin (bacterial filament) H4J00_08530 PF07963 Prokaryotic N-terminal methylation motif H4J00_08535 PF12344 Ultra-violet resistance protein B H4J00_08535 PF17757 UvrB interaction domain H4J00_08535 PF04851 Type III restriction enzyme, res subunit H4J00_08535 PF00271 Helicase conserved C-terminal domain H4J00_08535 PF02151 UvrB/uvrC motif H4J00_08570 PF01175 Urocanase Rossmann-like domain H4J00_08570 PF17392 Urocanase C-terminal domain H4J00_08570 PF17391 Urocanase N-terminal domain H4J00_08580 PF00221 Aromatic amino acid lyase H4J00_08585 PF07969 Amidohydrolase family H4J00_08595 PF07702 UTRA domain H4J00_08595 PF00392 Bacterial regulatory proteins, gntR family H4J00_08620 PF01794 Ferric reductase like transmembrane component H4J00_08625 PF00174 Oxidoreductase molybdopterin binding domain H4J00_08630 PF00266 Aminotransferase class-V H4J00_08635 PF01817 Chorismate mutase type II H4J00_08635 PF01842 ACT domain H4J00_08635 PF00800 Prephenate dehydratase H4J00_08640 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H4J00_08655 PF03544 Gram-negative bacterial TonB protein C-terminal H4J00_08660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H4J00_08660 PF02403 Seryl-tRNA synthetase N-terminal domain H4J00_08665 PF02525 Flavodoxin-like fold H4J00_08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_08670 PF03466 LysR substrate binding domain H4J00_08705 PF01609 Transposase DDE domain H4J00_08705 PF05598 Transposase domain (DUF772) H4J00_08720 PF03377 TAL effector repeat H4J00_08735 PF02203 Tar ligand binding domain homologue H4J00_08735 PF00672 HAMP domain H4J00_08735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_08750 PF00672 HAMP domain H4J00_08750 PF00072 Response regulator receiver domain H4J00_08750 PF01627 Hpt domain H4J00_08750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H4J00_08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_08750 PF00512 His Kinase A (phospho-acceptor) domain H4J00_08755 PF06745 KaiC H4J00_08765 PF00072 Response regulator receiver domain H4J00_08765 PF13426 PAS domain H4J00_08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_08780 PF03918 Cytochrome C biogenesis protein H4J00_08785 PF08534 Redoxin H4J00_08790 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H4J00_08790 PF01578 Cytochrome C assembly protein H4J00_08795 PF03100 CcmE H4J00_08800 PF04995 Heme exporter protein D (CcmD) H4J00_08805 PF01578 Cytochrome C assembly protein H4J00_08810 PF00082 Subtilase family H4J00_08820 PF08281 Sigma-70, region 4 H4J00_08820 PF04542 Sigma-70 region 2 H4J00_08830 PF00034 Cytochrome c H4J00_08845 PF05523 WxcM-like, C-terminal H4J00_08865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H4J00_08870 PF01943 Polysaccharide biosynthesis protein H4J00_08875 PF00535 Glycosyl transferase family 2 H4J00_08890 PF08241 Methyltransferase domain H4J00_08910 PF00534 Glycosyl transferases group 1 H4J00_08910 PF13579 Glycosyl transferase 4-like domain H4J00_08930 PF00005 ABC transporter H4J00_08930 PF00664 ABC transporter transmembrane region H4J00_08940 PF07690 Major Facilitator Superfamily H4J00_08950 PF00296 Luciferase-like monooxygenase H4J00_08965 PF01595 Cyclin M transmembrane N-terminal domain H4J00_08965 PF03471 Transporter associated domain H4J00_08965 PF00571 CBS domain H4J00_08975 PF01384 Phosphate transporter family H4J00_08990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_08990 PF01751 Toprim domain H4J00_08990 PF00986 DNA gyrase B subunit, carboxyl terminus H4J00_08990 PF00204 DNA gyrase B H4J00_09000 PF06418 CTP synthase N-terminus H4J00_09000 PF00117 Glutamine amidotransferase class-I H4J00_09005 PF00793 DAHP synthetase I family H4J00_09015 PF00113 Enolase, C-terminal TIM barrel domain H4J00_09015 PF03952 Enolase, N-terminal domain H4J00_09020 PF04977 Septum formation initiator H4J00_09025 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H4J00_09035 PF02542 YgbB family H4J00_09040 PF01142 tRNA pseudouridine synthase D (TruD) H4J00_09050 PF01975 Survival protein SurE H4J00_09060 PF09335 SNARE associated Golgi protein H4J00_09065 PF01551 Peptidase family M23 H4J00_09065 PF01476 LysM domain H4J00_09075 PF01985 CRS1 / YhbY (CRM) domain H4J00_09080 PF01728 FtsJ-like methyltransferase H4J00_09085 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_09085 PF17862 AAA+ lid domain H4J00_09085 PF06480 FtsH Extracellular H4J00_09085 PF01434 Peptidase family M41 H4J00_09090 PF00809 Pterin binding enzyme H4J00_09100 PF17209 Hfq protein H4J00_09105 PF01926 50S ribosome-binding GTPase H4J00_09105 PF13167 GTP-binding GTPase N-terminal H4J00_09105 PF16360 GTP-binding GTPase Middle Region H4J00_09110 PF02464 Competence-damaged protein H4J00_09115 PF03109 ABC1 family H4J00_09120 PF01726 LexA DNA binding domain H4J00_09120 PF00717 Peptidase S24-like H4J00_09125 PF00154 recA bacterial DNA recombination protein H4J00_09130 PF02631 RecX family H4J00_09135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H4J00_09135 PF02272 DHHA1 domain H4J00_09135 PF01411 tRNA synthetases class II (A) H4J00_09140 PF02599 Global regulator protein family H4J00_09175 PF08460 Bacterial SH3 domain H4J00_09175 PF01551 Peptidase family M23 H4J00_09180 PF01979 Amidohydrolase family H4J00_09185 PF01809 Putative membrane protein insertion efficiency factor H4J00_09190 PF01258 Prokaryotic dksA/traR C4-type zinc finger H4J00_09205 PF02657 Fe-S metabolism associated domain H4J00_09210 PF01406 tRNA synthetases class I (C) catalytic domain H4J00_09210 PF09190 DALR domain H4J00_09220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H4J00_09220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H4J00_09225 PF00764 Arginosuccinate synthase H4J00_09235 PF07687 Peptidase dimerisation domain H4J00_09235 PF01546 Peptidase family M20/M25/M40 H4J00_09240 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase H4J00_09240 PF00696 Amino acid kinase family H4J00_09250 PF01118 Semialdehyde dehydrogenase, NAD binding domain H4J00_09255 PF00206 Lyase H4J00_09270 PF01472 PUA domain H4J00_09270 PF00696 Amino acid kinase family H4J00_09275 PF00171 Aldehyde dehydrogenase family H4J00_09280 PF02129 X-Pro dipeptidyl-peptidase (S15 family) H4J00_09280 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain H4J00_09305 PF01654 Cytochrome bd terminal oxidase subunit I H4J00_09315 PF00005 ABC transporter H4J00_09315 PF00664 ABC transporter transmembrane region H4J00_09320 PF00005 ABC transporter H4J00_09320 PF00664 ABC transporter transmembrane region H4J00_09335 PF00561 alpha/beta hydrolase fold H4J00_09345 PF03918 Cytochrome C biogenesis protein H4J00_09350 PF08534 Redoxin H4J00_09355 PF01578 Cytochrome C assembly protein H4J00_09355 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H4J00_09360 PF03100 CcmE H4J00_09370 PF01578 Cytochrome C assembly protein H4J00_09375 PF03379 CcmB protein H4J00_09380 PF00005 ABC transporter H4J00_09385 PF00155 Aminotransferase class I and II H4J00_09390 PF00795 Carbon-nitrogen hydrolase H4J00_09405 PF01479 S4 domain H4J00_09405 PF00849 RNA pseudouridylate synthase H4J00_09410 PF04079 Segregation and condensation complex subunit ScpB H4J00_09415 PF02616 Segregation and condensation protein ScpA H4J00_09420 PF03795 YCII-related domain H4J00_09430 PF00356 Bacterial regulatory proteins, lacI family H4J00_09450 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_09455 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_09480 PF00795 Carbon-nitrogen hydrolase H4J00_09490 PF04371 Porphyromonas-type peptidyl-arginine deiminase H4J00_09500 PF00444 Ribosomal protein L36 H4J00_09505 PF02224 Cytidylate kinase H4J00_09510 PF00575 S1 RNA binding domain H4J00_09515 PF00216 Bacterial DNA-binding protein H4J00_09525 PF18073 Rubredoxin metal binding domain H4J00_09530 PF00953 Glycosyl transferase family 4 H4J00_09535 PF02719 Polysaccharide biosynthesis protein H4J00_09540 PF00483 Nucleotidyl transferase H4J00_09555 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H4J00_09555 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H4J00_09560 PF00571 CBS domain H4J00_09560 PF00478 IMP dehydrogenase / GMP reductase domain H4J00_09565 PF00117 Glutamine amidotransferase class-I H4J00_09565 PF00958 GMP synthase C terminal domain H4J00_09565 PF02540 NAD synthase H4J00_09570 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) H4J00_09575 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus H4J00_09575 PF00361 Proton-conducting membrane transporter H4J00_09575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus H4J00_09580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_09580 PF03466 LysR substrate binding domain H4J00_09600 PF03601 Conserved hypothetical protein 698 H4J00_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_09605 PF03466 LysR substrate binding domain H4J00_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_09610 PF03466 LysR substrate binding domain H4J00_09625 PF00072 Response regulator receiver domain H4J00_09630 PF01566 Natural resistance-associated macrophage protein H4J00_09635 PF02742 Iron dependent repressor, metal binding and dimerisation domain H4J00_09635 PF01325 Iron dependent repressor, N-terminal DNA binding domain H4J00_09640 PF14437 MafB19-like deaminase H4J00_09645 PF00929 Exonuclease H4J00_09650 PF00924 Mechanosensitive ion channel H4J00_09650 PF05552 Conserved TM helix H4J00_09655 PF00391 PEP-utilising enzyme, mobile domain H4J00_09655 PF02896 PEP-utilising enzyme, TIM barrel domain H4J00_09655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H4J00_09660 PF03618 Kinase/pyrophosphorylase H4J00_09680 PF01066 CDP-alcohol phosphatidyltransferase H4J00_09690 PF00561 alpha/beta hydrolase fold H4J00_09705 PF00355 Rieske [2Fe-2S] domain H4J00_09705 PF01266 FAD dependent oxidoreductase H4J00_09715 PF17674 HHH domain H4J00_09715 PF00575 S1 RNA binding domain H4J00_09715 PF09371 Tex-like protein N-terminal domain H4J00_09715 PF16921 Tex protein YqgF-like domain H4J00_09725 PF00072 Response regulator receiver domain H4J00_09725 PF00512 His Kinase A (phospho-acceptor) domain H4J00_09725 PF09308 LuxQ, periplasmic H4J00_09725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_09815 PF00034 Cytochrome c H4J00_09825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_09830 PF00873 AcrB/AcrD/AcrF family H4J00_09835 PF00873 AcrB/AcrD/AcrF family H4J00_09840 PF05598 Transposase domain (DUF772) H4J00_09840 PF01609 Transposase DDE domain H4J00_09845 PF01081 KDPG and KHG aldolase H4J00_09850 PF00920 Dehydratase family H4J00_09855 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H4J00_09860 PF02685 Glucokinase H4J00_09865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H4J00_09865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H4J00_09870 PF00005 ABC transporter H4J00_09870 PF17912 MalK OB fold domain H4J00_09880 PF01571 Aminomethyltransferase folate-binding domain H4J00_09890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H4J00_09895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H4J00_09900 PF00890 FAD binding domain H4J00_09900 PF02910 Fumarate reductase flavoprotein C-term H4J00_09910 PF13085 2Fe-2S iron-sulfur cluster binding domain H4J00_09915 PF03937 Flavinator of succinate dehydrogenase H4J00_09925 PF12704 MacB-like periplasmic core domain H4J00_09925 PF02687 FtsX-like permease family H4J00_09930 PF00005 ABC transporter H4J00_09945 PF03772 Competence protein H4J00_09945 PF00753 Metallo-beta-lactamase superfamily H4J00_09950 PF01618 MotA/TolQ/ExbB proton channel family H4J00_09960 PF00664 ABC transporter transmembrane region H4J00_09960 PF00005 ABC transporter H4J00_09965 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H4J00_09970 PF02348 Cytidylyltransferase H4J00_09975 PF01451 Low molecular weight phosphotyrosine protein phosphatase H4J00_09985 PF01541 GIY-YIG catalytic domain H4J00_09985 PF02151 UvrB/uvrC motif H4J00_09985 PF08459 UvrC Helix-hairpin-helix N-terminal H4J00_09990 PF01066 CDP-alcohol phosphatidyltransferase H4J00_10015 PF13936 Helix-turn-helix domain H4J00_10015 PF00665 Integrase core domain H4J00_10040 PF05598 Transposase domain (DUF772) H4J00_10040 PF01609 Transposase DDE domain H4J00_10060 PF00668 Condensation domain H4J00_10060 PF00501 AMP-binding enzyme H4J00_10060 PF13193 AMP-binding enzyme C-terminal domain H4J00_10060 PF00550 Phosphopantetheine attachment site H4J00_10060 PF00975 Thioesterase domain H4J00_10065 PF00501 AMP-binding enzyme H4J00_10065 PF13193 AMP-binding enzyme C-terminal domain H4J00_10065 PF00668 Condensation domain H4J00_10065 PF00550 Phosphopantetheine attachment site H4J00_10070 PF17837 4'-phosphopantetheinyl transferase N-terminal domain H4J00_10070 PF01648 4'-phosphopantetheinyl transferase superfamily H4J00_10080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H4J00_10080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H4J00_10080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H4J00_10090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H4J00_10100 PF00581 Rhodanese-like domain H4J00_10100 PF17773 UPF0176 acylphosphatase like domain H4J00_10105 PF00196 Bacterial regulatory proteins, luxR family H4J00_10105 PF00072 Response regulator receiver domain H4J00_10110 PF00575 S1 RNA binding domain H4J00_10110 PF10150 Ribonuclease E/G family H4J00_10110 PF12111 Polyribonucleotide phosphorylase C terminal H4J00_10115 PF00849 RNA pseudouridylate synthase H4J00_10115 PF01479 S4 domain H4J00_10120 PF11737 Protein of unknown function (DUF3300) H4J00_10140 PF01329 Pterin 4 alpha carbinolamine dehydratase H4J00_10145 PF01106 NifU-like domain H4J00_10200 PF04717 Type VI secretion system, phage-baseplate injector H4J00_10200 PF06715 Gp5 C-terminal repeat (3 copies) H4J00_10205 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H4J00_10210 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H4J00_10215 PF05638 Type VI secretion system effector, Hcp H4J00_10220 PF07024 ImpE protein H4J00_10225 PF04965 Gene 25-like lysozyme H4J00_10230 PF05947 Type VI secretion system, TssF H4J00_10240 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_10240 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_10240 PF07724 AAA domain (Cdc48 subfamily) H4J00_10240 PF17871 AAA lid domain H4J00_10265 PF04717 Type VI secretion system, phage-baseplate injector H4J00_10265 PF06715 Gp5 C-terminal repeat (3 copies) H4J00_10280 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H4J00_10290 PF06761 Intracellular multiplication and human macrophage-killing H4J00_10290 PF14331 ImcF-related N-terminal domain H4J00_10290 PF06744 Type VI secretion protein IcmF C-terminal H4J00_10305 PF00069 Protein kinase domain H4J00_10320 PF06812 ImpA, N-terminal, type VI secretion system H4J00_10325 PF03466 LysR substrate binding domain H4J00_10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_10330 PF00512 His Kinase A (phospho-acceptor) domain H4J00_10335 PF00034 Cytochrome c H4J00_10335 PF03150 Di-haem cytochrome c peroxidase H4J00_10340 PF00486 Transcriptional regulatory protein, C terminal H4J00_10340 PF00072 Response regulator receiver domain H4J00_10385 PF00529 HlyD membrane-fusion protein of T1SS H4J00_10385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_10390 PF00873 AcrB/AcrD/AcrF family H4J00_10460 PF03377 TAL effector repeat H4J00_10465 PF04717 Type VI secretion system, phage-baseplate injector H4J00_10495 PF03377 TAL effector repeat H4J00_10510 PF03797 Autotransporter beta-domain H4J00_10510 PF00082 Subtilase family H4J00_10515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_10520 PF00873 AcrB/AcrD/AcrF family H4J00_10525 PF02321 Outer membrane efflux protein H4J00_10530 PF00072 Response regulator receiver domain H4J00_10530 PF13426 PAS domain H4J00_10530 PF08448 PAS fold H4J00_10530 PF00512 His Kinase A (phospho-acceptor) domain H4J00_10530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_10535 PF00196 Bacterial regulatory proteins, luxR family H4J00_10535 PF00072 Response regulator receiver domain H4J00_10540 PF12951 Passenger-associated-transport-repeat H4J00_10545 PF00563 EAL domain H4J00_10545 PF00990 Diguanylate cyclase, GGDEF domain H4J00_10545 PF08447 PAS fold H4J00_10545 PF08448 PAS fold H4J00_10595 PF10414 Sirohaem synthase dimerisation region H4J00_10595 PF14824 Sirohaem biosynthesis protein central H4J00_10595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H4J00_10620 PF12804 MobA-like NTP transferase domain H4J00_10625 PF03453 MoeA N-terminal region (domain I and II) H4J00_10625 PF00994 Probable molybdopterin binding domain H4J00_10625 PF03454 MoeA C-terminal region (domain IV) H4J00_10650 PF00899 ThiF family H4J00_10665 PF00994 Probable molybdopterin binding domain H4J00_10665 PF03454 MoeA C-terminal region (domain IV) H4J00_10665 PF03453 MoeA N-terminal region (domain I and II) H4J00_10670 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H4J00_10670 PF01926 50S ribosome-binding GTPase H4J00_10675 PF01011 PQQ enzyme repeat H4J00_10675 PF13360 PQQ-like domain H4J00_10685 PF13464 Domain of unknown function (DUF4115) H4J00_10695 PF04055 Radical SAM superfamily H4J00_10700 PF00334 Nucleoside diphosphate kinase H4J00_10710 PF00378 Enoyl-CoA hydratase/isomerase H4J00_10710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H4J00_10710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H4J00_10715 PF02803 Thiolase, C-terminal domain H4J00_10715 PF00108 Thiolase, N-terminal domain H4J00_10720 PF00654 Voltage gated chloride channel H4J00_10730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H4J00_10740 PF12002 MgsA AAA+ ATPase C terminal H4J00_10740 PF16193 AAA C-terminal domain H4J00_10740 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_10750 PF03548 Outer membrane lipoprotein carrier protein LolA H4J00_10760 PF09397 Ftsk gamma domain H4J00_10760 PF17854 FtsK alpha domain H4J00_10760 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H4J00_10760 PF01580 FtsK/SpoIIIE family H4J00_10765 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_10780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H4J00_10785 PF01176 Translation initiation factor 1A / IF-1 H4J00_10790 PF07724 AAA domain (Cdc48 subfamily) H4J00_10790 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_10790 PF17871 AAA lid domain H4J00_10790 PF02861 Clp amino terminal domain, pathogenicity island component H4J00_10790 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_10795 PF02617 ATP-dependent Clp protease adaptor protein ClpS H4J00_10800 PF00293 NUDIX domain H4J00_10810 PF04356 Protein of unknown function (DUF489) H4J00_10815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_10815 PF12729 Four helix bundle sensory module for signal transduction H4J00_10815 PF00672 HAMP domain H4J00_10830 PF00563 EAL domain H4J00_10830 PF03707 Bacterial signalling protein N terminal repeat H4J00_10830 PF00990 Diguanylate cyclase, GGDEF domain H4J00_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_10835 PF07730 Histidine kinase H4J00_10840 PF00563 EAL domain H4J00_10840 PF00990 Diguanylate cyclase, GGDEF domain H4J00_10840 PF03707 Bacterial signalling protein N terminal repeat H4J00_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_10845 PF00512 His Kinase A (phospho-acceptor) domain H4J00_10865 PF00072 Response regulator receiver domain H4J00_10865 PF01584 CheW-like domain H4J00_10875 PF00460 Flagella basal body rod protein H4J00_10875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H4J00_10880 PF03963 Flagellar hook capping protein - N-terminal region H4J00_10885 PF00460 Flagella basal body rod protein H4J00_10885 PF07559 Flagellar basal body protein FlaE H4J00_10885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H4J00_10890 PF00460 Flagella basal body rod protein H4J00_10890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H4J00_10895 PF00460 Flagella basal body rod protein H4J00_10895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H4J00_10900 PF02107 Flagellar L-ring protein H4J00_10905 PF02119 Flagellar P-ring protein H4J00_10910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H4J00_10910 PF10135 Rod binding protein H4J00_10915 PF07196 Flagellin hook IN motif H4J00_10915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H4J00_10925 PF00700 Bacterial flagellin C-terminal helical region H4J00_10925 PF00669 Bacterial flagellin N-terminal helical region H4J00_10930 PF02465 Flagellar hook-associated protein 2 N-terminus H4J00_10930 PF07196 Flagellin hook IN motif H4J00_10930 PF07195 Flagellar hook-associated protein 2 C-terminus H4J00_10935 PF02561 Flagellar protein FliS H4J00_10950 PF00196 Bacterial regulatory proteins, luxR family H4J00_10950 PF00072 Response regulator receiver domain H4J00_10955 PF00309 Sigma-54 factor, Activator interacting domain (AID) H4J00_10955 PF04552 Sigma-54, DNA binding domain H4J00_10955 PF04963 Sigma-54 factor, core binding domain H4J00_10960 PF01339 CheB methylesterase H4J00_10960 PF00072 Response regulator receiver domain H4J00_10965 PF06490 Flagellar regulatory protein FleQ H4J00_10965 PF00158 Sigma-54 interaction domain H4J00_10965 PF02954 Bacterial regulatory protein, Fis family H4J00_10970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H4J00_10980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H4J00_10980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H4J00_10985 PF00106 short chain dehydrogenase H4J00_11020 PF00534 Glycosyl transferases group 1 H4J00_11020 PF00535 Glycosyl transferase family 2 H4J00_11025 PF02049 Flagellar hook-basal body complex protein FliE H4J00_11030 PF01514 Secretory protein of YscJ/FliF family H4J00_11030 PF08345 Flagellar M-ring protein C-terminal H4J00_11035 PF01706 FliG C-terminal domain H4J00_11035 PF14842 FliG N-terminal domain H4J00_11035 PF14841 FliG middle domain H4J00_11045 PF18269 T3SS EscN ATPase C-terminal domain H4J00_11045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H4J00_11065 PF02154 Flagellar motor switch protein FliM H4J00_11065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H4J00_11070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H4J00_11075 PF04347 Flagellar biosynthesis protein, FliO H4J00_11080 PF00813 FliP family H4J00_11085 PF01313 Bacterial export proteins, family 3 H4J00_11090 PF01311 Bacterial export proteins, family 1 H4J00_11095 PF00990 Diguanylate cyclase, GGDEF domain H4J00_11100 PF00990 Diguanylate cyclase, GGDEF domain H4J00_11105 PF03707 Bacterial signalling protein N terminal repeat H4J00_11105 PF00990 Diguanylate cyclase, GGDEF domain H4J00_11105 PF00563 EAL domain H4J00_11110 PF01312 FlhB HrpN YscU SpaS Family H4J00_11115 PF00771 FHIPEP family H4J00_11120 PF00448 SRP54-type protein, GTPase domain H4J00_11125 PF10609 NUBPL iron-transfer P-loop NTPase H4J00_11130 PF04542 Sigma-70 region 2 H4J00_11130 PF04539 Sigma-70 region 3 H4J00_11130 PF04545 Sigma-70, region 4 H4J00_11135 PF00072 Response regulator receiver domain H4J00_11140 PF04344 Chemotaxis phosphatase, CheZ H4J00_11145 PF01627 Hpt domain H4J00_11145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_11145 PF02895 Signal transducing histidine kinase, homodimeric domain H4J00_11145 PF01584 CheW-like domain H4J00_11145 PF00072 Response regulator receiver domain H4J00_11225 PF07715 TonB-dependent Receptor Plug Domain H4J00_11225 PF00593 TonB dependent receptor H4J00_11240 PF00593 TonB dependent receptor H4J00_11240 PF07715 TonB-dependent Receptor Plug Domain H4J00_11245 PF01618 MotA/TolQ/ExbB proton channel family H4J00_11250 PF13677 Membrane MotB of proton-channel complex MotA/MotB H4J00_11250 PF00691 OmpA family H4J00_11255 PF13614 AAA domain H4J00_11260 PF01584 CheW-like domain H4J00_11270 PF00072 Response regulator receiver domain H4J00_11275 PF09078 CheY binding H4J00_11275 PF02895 Signal transducing histidine kinase, homodimeric domain H4J00_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_11275 PF01627 Hpt domain H4J00_11275 PF01584 CheW-like domain H4J00_11280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11280 PF00672 HAMP domain H4J00_11280 PF02203 Tar ligand binding domain homologue H4J00_11305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11305 PF00672 HAMP domain H4J00_11305 PF02203 Tar ligand binding domain homologue H4J00_11310 PF00672 HAMP domain H4J00_11310 PF02203 Tar ligand binding domain homologue H4J00_11310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11315 PF02203 Tar ligand binding domain homologue H4J00_11315 PF00672 HAMP domain H4J00_11315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11325 PF00672 HAMP domain H4J00_11325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11325 PF02203 Tar ligand binding domain homologue H4J00_11330 PF00672 HAMP domain H4J00_11330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11330 PF02203 Tar ligand binding domain homologue H4J00_11335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11335 PF02203 Tar ligand binding domain homologue H4J00_11335 PF00672 HAMP domain H4J00_11340 PF02203 Tar ligand binding domain homologue H4J00_11340 PF00672 HAMP domain H4J00_11340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11345 PF00672 HAMP domain H4J00_11345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11345 PF02203 Tar ligand binding domain homologue H4J00_11355 PF07317 Flagellar regulator YcgR H4J00_11355 PF07238 PilZ domain H4J00_11360 PF01584 CheW-like domain H4J00_11370 PF02203 Tar ligand binding domain homologue H4J00_11370 PF00672 HAMP domain H4J00_11370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_11375 PF01739 CheR methyltransferase, SAM binding domain H4J00_11375 PF03705 CheR methyltransferase, all-alpha domain H4J00_11380 PF03975 CheD chemotactic sensory transduction H4J00_11385 PF01339 CheB methylesterase H4J00_11385 PF00072 Response regulator receiver domain H4J00_11390 PF03707 Bacterial signalling protein N terminal repeat H4J00_11390 PF00990 Diguanylate cyclase, GGDEF domain H4J00_11390 PF00563 EAL domain H4J00_11400 PF00561 alpha/beta hydrolase fold H4J00_11405 PF00330 Aconitase family (aconitate hydratase) H4J00_11405 PF06434 Aconitate hydratase 2 N-terminus H4J00_11405 PF11791 Aconitate B N-terminal domain H4J00_11420 PF00330 Aconitase family (aconitate hydratase) H4J00_11420 PF00694 Aconitase C-terminal domain H4J00_11430 PF13193 AMP-binding enzyme C-terminal domain H4J00_11430 PF00501 AMP-binding enzyme H4J00_11435 PF00378 Enoyl-CoA hydratase/isomerase H4J00_11440 PF00072 Response regulator receiver domain H4J00_11440 PF01627 Hpt domain H4J00_11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_11440 PF00512 His Kinase A (phospho-acceptor) domain H4J00_11445 PF00072 Response regulator receiver domain H4J00_11450 PF01336 OB-fold nucleic acid binding domain H4J00_11450 PF00152 tRNA synthetases class II (D, K and N) H4J00_11460 PF00072 Response regulator receiver domain H4J00_11460 PF04397 LytTr DNA-binding domain H4J00_11475 PF01368 DHH family H4J00_11475 PF02272 DHHA1 domain H4J00_11475 PF17768 RecJ OB domain H4J00_11485 PF03449 Transcription elongation factor, N-terminal H4J00_11485 PF01272 Transcription elongation factor, GreA/GreB, C-term H4J00_11490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H4J00_11490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H4J00_11490 PF02142 MGS-like domain H4J00_11500 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H4J00_11500 PF00117 Glutamine amidotransferase class-I H4J00_11505 PF05173 Dihydrodipicolinate reductase, C-terminus H4J00_11505 PF01113 Dihydrodipicolinate reductase, N-terminus H4J00_11510 PF03475 3-alpha domain H4J00_11510 PF03473 MOSC domain H4J00_11515 PF00155 Aminotransferase class I and II H4J00_11535 PF07664 Ferrous iron transport protein B C terminus H4J00_11535 PF07670 Nucleoside recognition H4J00_11535 PF02421 Ferrous iron transport protein B H4J00_11545 PF00378 Enoyl-CoA hydratase/isomerase H4J00_11555 PF00682 HMGL-like H4J00_11560 PF00106 short chain dehydrogenase H4J00_11565 PF09285 Elongation factor P, C-terminal H4J00_11565 PF08207 Elongation factor P (EF-P) KOW-like domain H4J00_11565 PF01132 Elongation factor P (EF-P) OB domain H4J00_11585 PF01565 FAD binding domain H4J00_11585 PF02913 FAD linked oxidases, C-terminal domain H4J00_11590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H4J00_11590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H4J00_11600 PF13520 Amino acid permease H4J00_11605 PF13520 Amino acid permease H4J00_11610 PF00596 Class II Aldolase and Adducin N-terminal domain H4J00_11615 PF03079 ARD/ARD' family H4J00_11635 PF01502 Phosphoribosyl-AMP cyclohydrolase H4J00_11635 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase H4J00_11640 PF00977 Histidine biosynthesis protein H4J00_11645 PF00977 Histidine biosynthesis protein H4J00_11650 PF00117 Glutamine amidotransferase class-I H4J00_11655 PF00475 Imidazoleglycerol-phosphate dehydratase H4J00_11660 PF00155 Aminotransferase class I and II H4J00_11665 PF00815 Histidinol dehydrogenase H4J00_11670 PF08029 HisG, C-terminal domain H4J00_11670 PF01634 ATP phosphoribosyltransferase H4J00_11685 PF03129 Anticodon binding domain H4J00_11685 PF13393 Histidyl-tRNA synthetase H4J00_11700 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_11700 PF14821 Threonine synthase N terminus H4J00_11715 PF13683 Integrase core domain H4J00_11715 PF13276 HTH-like domain H4J00_11735 PF00288 GHMP kinases N terminal domain H4J00_11735 PF08544 GHMP kinases C terminal H4J00_11740 PF01842 ACT domain H4J00_11740 PF00696 Amino acid kinase family H4J00_11740 PF03447 Homoserine dehydrogenase, NAD binding domain H4J00_11740 PF13840 ACT domain H4J00_11740 PF00742 Homoserine dehydrogenase H4J00_11755 PF00171 Aldehyde dehydrogenase family H4J00_11770 PF01180 Dihydroorotate dehydrogenase H4J00_11775 PF01565 FAD binding domain H4J00_11775 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H4J00_11780 PF00892 EamA-like transporter family H4J00_11785 PF01177 Asp/Glu/Hydantoin racemase H4J00_11790 PF07690 Major Facilitator Superfamily H4J00_11800 PF01569 PAP2 superfamily H4J00_11805 PF04551 GcpE protein H4J00_11815 PF00072 Response regulator receiver domain H4J00_11820 PF00150 Cellulase (glycosyl hydrolase family 5) H4J00_11820 PF02013 Cellulose or protein binding domain H4J00_11830 PF00360 Phytochrome region H4J00_11830 PF00990 Diguanylate cyclase, GGDEF domain H4J00_11830 PF01590 GAF domain H4J00_11830 PF00563 EAL domain H4J00_11840 PF00474 Sodium:solute symporter family H4J00_11845 PF01915 Glycosyl hydrolase family 3 C-terminal domain H4J00_11845 PF14310 Fibronectin type III-like domain H4J00_11845 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_11865 PF00342 Phosphoglucose isomerase H4J00_11870 PF02261 Aspartate decarboxylase H4J00_11875 PF02569 Pantoate-beta-alanine ligase H4J00_11880 PF02548 Ketopantoate hydroxymethyltransferase H4J00_11885 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H4J00_11890 PF01743 Poly A polymerase head domain H4J00_11890 PF12626 Polymerase A arginine-rich C-terminus H4J00_11890 PF12627 Probable RNA and SrmB- binding site of polymerase A H4J00_11900 PF02649 Type I GTP cyclohydrolase folE2 H4J00_11905 PF01520 N-acetylmuramoyl-L-alanine amidase H4J00_11915 PF00083 Sugar (and other) transporter H4J00_11925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H4J00_11925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H4J00_11945 PF03466 LysR substrate binding domain H4J00_11945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_11950 PF01081 KDPG and KHG aldolase H4J00_11955 PF13378 Enolase C-terminal domain-like H4J00_11955 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H4J00_11960 PF08450 SMP-30/Gluconolactonase/LRE-like region H4J00_11965 PF05035 2-keto-3-deoxy-galactonokinase H4J00_11970 PF00037 4Fe-4S binding domain H4J00_11970 PF11953 Domain of unknown function (DUF3470) H4J00_11980 PF00701 Dihydrodipicolinate synthetase family H4J00_11995 PF00578 AhpC/TSA family H4J00_12000 PF02562 PhoH-like protein H4J00_12000 PF13638 PIN domain H4J00_12010 PF08543 Phosphomethylpyrimidine kinase H4J00_12010 PF02581 Thiamine monophosphate synthase H4J00_12035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_12035 PF03466 LysR substrate binding domain H4J00_12040 PF17954 Quercetinase C-terminal cupin domain H4J00_12040 PF02678 Pirin H4J00_12065 PF00295 Glycosyl hydrolases family 28 H4J00_12080 PF13419 Haloacid dehalogenase-like hydrolase H4J00_12090 PF01979 Amidohydrolase family H4J00_12100 PF09285 Elongation factor P, C-terminal H4J00_12100 PF08207 Elongation factor P (EF-P) KOW-like domain H4J00_12100 PF01132 Elongation factor P (EF-P) OB domain H4J00_12105 PF04055 Radical SAM superfamily H4J00_12110 PF00563 EAL domain H4J00_12110 PF00990 Diguanylate cyclase, GGDEF domain H4J00_12110 PF03707 Bacterial signalling protein N terminal repeat H4J00_12110 PF13188 PAS domain H4J00_12120 PF00588 SpoU rRNA Methylase family H4J00_12125 PF00459 Inositol monophosphatase family H4J00_12130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H4J00_12130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H4J00_12135 PF00545 ribonuclease H4J00_12155 PF00005 ABC transporter H4J00_12155 PF16326 ABC transporter C-terminal domain H4J00_12155 PF12848 ABC transporter H4J00_12160 PF03880 DbpA RNA binding domain H4J00_12160 PF00270 DEAD/DEAH box helicase H4J00_12160 PF00271 Helicase conserved C-terminal domain H4J00_12165 PF00156 Phosphoribosyl transferase domain H4J00_12170 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H4J00_12180 PF14497 Glutathione S-transferase, C-terminal domain H4J00_12180 PF02798 Glutathione S-transferase, N-terminal domain H4J00_12185 PF00313 'Cold-shock' DNA-binding domain H4J00_12190 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H4J00_12195 PF07152 YaeQ protein H4J00_12205 PF00563 EAL domain H4J00_12205 PF00990 Diguanylate cyclase, GGDEF domain H4J00_12205 PF00072 Response regulator receiver domain H4J00_12210 PF01435 Peptidase family M48 H4J00_12215 PF00749 tRNA synthetases class I (E and Q), catalytic domain H4J00_12220 PF00106 short chain dehydrogenase H4J00_12225 PF07879 PHB/PHA accumulation regulator DNA-binding domain H4J00_12225 PF05233 PHB accumulation regulatory domain H4J00_12240 PF01119 DNA mismatch repair protein, C-terminal domain H4J00_12240 PF08676 MutL C terminal dimerisation domain H4J00_12245 PF01520 N-acetylmuramoyl-L-alanine amidase H4J00_12245 PF11741 AMIN domain H4J00_12250 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H4J00_12255 PF01256 Carbohydrate kinase H4J00_12255 PF03853 YjeF-related protein N-terminus H4J00_12260 PF08331 Domain of unknown function (DUF1730) H4J00_12265 PF02601 Exonuclease VII, large subunit H4J00_12265 PF13742 OB-fold nucleic acid binding domain H4J00_12280 PF03781 Sulfatase-modifying factor enzyme 1 H4J00_12290 PF00570 HRDC domain H4J00_12290 PF01612 3'-5' exonuclease H4J00_12295 PF04679 ATP dependent DNA ligase C terminal region H4J00_12295 PF01068 ATP dependent DNA ligase domain H4J00_12295 PF13298 DNA polymerase Ligase (LigD) H4J00_12350 PF00291 Pyridoxal-phosphate dependent enzyme H4J00_12380 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase H4J00_12405 PF03328 HpcH/HpaI aldolase/citrate lyase family H4J00_12460 PF01584 CheW-like domain H4J00_12465 PF00672 HAMP domain H4J00_12465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_12465 PF02743 Cache domain H4J00_12490 PF04386 Stringent starvation protein B H4J00_12495 PF02798 Glutathione S-transferase, N-terminal domain H4J00_12495 PF00043 Glutathione S-transferase, C-terminal domain H4J00_12500 PF02167 Cytochrome C1 family H4J00_12505 PF00032 Cytochrome b(C-terminal)/b6/petD H4J00_12505 PF00033 Cytochrome b/b6/petB H4J00_12510 PF00355 Rieske [2Fe-2S] domain H4J00_12510 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal H4J00_12515 PF01464 Transglycosylase SLT domain H4J00_12535 PF04055 Radical SAM superfamily H4J00_12535 PF01938 TRAM domain H4J00_12535 PF00919 Uncharacterized protein family UPF0004 H4J00_12540 PF02562 PhoH-like protein H4J00_12550 PF02130 Uncharacterized protein family UPF0054 H4J00_12560 PF03471 Transporter associated domain H4J00_12560 PF00571 CBS domain H4J00_12575 PF00171 Aldehyde dehydrogenase family H4J00_12580 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_12585 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_12595 PF00005 ABC transporter H4J00_12595 PF08402 TOBE domain H4J00_12600 PF02321 Outer membrane efflux protein H4J00_12605 PF07690 Major Facilitator Superfamily H4J00_12610 PF13533 Biotin-lipoyl like H4J00_12615 PF13416 Bacterial extracellular solute-binding protein H4J00_12620 PF00202 Aminotransferase class-III H4J00_12635 PF04717 Type VI secretion system, phage-baseplate injector H4J00_12650 PF03377 TAL effector repeat H4J00_12665 PF04717 Type VI secretion system, phage-baseplate injector H4J00_12665 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_12665 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_12705 PF00120 Glutamine synthetase, catalytic domain H4J00_12710 PF07722 Peptidase C26 H4J00_12715 PF00120 Glutamine synthetase, catalytic domain H4J00_12720 PF01266 FAD dependent oxidoreductase H4J00_12725 PF00072 Response regulator receiver domain H4J00_12725 PF00990 Diguanylate cyclase, GGDEF domain H4J00_12730 PF07690 Major Facilitator Superfamily H4J00_12730 PF00083 Sugar (and other) transporter H4J00_12740 PF00384 Molybdopterin oxidoreductase H4J00_12745 PF02634 FdhD/NarQ family H4J00_12760 PF00202 Aminotransferase class-III H4J00_12765 PF00005 ABC transporter H4J00_12775 PF04286 Protein of unknown function (DUF445) H4J00_12780 PF00512 His Kinase A (phospho-acceptor) domain H4J00_12780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H4J00_12780 PF01627 Hpt domain H4J00_12780 PF00072 Response regulator receiver domain H4J00_12780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_12780 PF00672 HAMP domain H4J00_12785 PF00072 Response regulator receiver domain H4J00_12795 PF07690 Major Facilitator Superfamily H4J00_12805 PF05088 Bacterial NAD-glutamate dehydrogenase H4J00_12815 PF00529 HlyD membrane-fusion protein of T1SS H4J00_12815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_12820 PF00873 AcrB/AcrD/AcrF family H4J00_12825 PF01609 Transposase DDE domain H4J00_12825 PF13006 Insertion element 4 transposase N-terminal H4J00_12830 PF00356 Bacterial regulatory proteins, lacI family H4J00_12835 PF00381 PTS HPr component phosphorylation site H4J00_12835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H4J00_12835 PF02896 PEP-utilising enzyme, TIM barrel domain H4J00_12835 PF00391 PEP-utilising enzyme, mobile domain H4J00_12835 PF05524 PEP-utilising enzyme, N-terminal H4J00_12840 PF00294 pfkB family carbohydrate kinase H4J00_12845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H4J00_12855 PF01609 Transposase DDE domain H4J00_12855 PF05598 Transposase domain (DUF772) H4J00_12860 PF01593 Flavin containing amine oxidoreductase H4J00_12895 PF07549 SecD/SecF GG Motif H4J00_12895 PF02355 Protein export membrane protein H4J00_12900 PF02355 Protein export membrane protein H4J00_12900 PF07549 SecD/SecF GG Motif H4J00_12900 PF13721 SecD export protein N-terminal TM region H4J00_12905 PF02699 Preprotein translocase subunit H4J00_12910 PF01702 Queuine tRNA-ribosyltransferase H4J00_12915 PF02547 Queuosine biosynthesis protein H4J00_12970 PF00037 4Fe-4S binding domain H4J00_12980 PF01467 Cytidylyltransferase-like H4J00_12990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_12990 PF00183 Hsp90 protein H4J00_13020 PF04616 Glycosyl hydrolases family 43 H4J00_13025 PF07532 Bacterial Ig-like domain (group 4) H4J00_13030 PF00593 TonB dependent receptor H4J00_13030 PF07715 TonB-dependent Receptor Plug Domain H4J00_13040 PF09286 Pro-kumamolisin, activation domain H4J00_13040 PF00082 Subtilase family H4J00_13080 PF13520 Amino acid permease H4J00_13095 PF00557 Metallopeptidase family M24 H4J00_13095 PF01321 Creatinase/Prolidase N-terminal domain H4J00_13100 PF00171 Aldehyde dehydrogenase family H4J00_13105 PF00701 Dihydrodipicolinate synthetase family H4J00_13110 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_13110 PF04324 BFD-like [2Fe-2S] binding domain H4J00_13120 PF01266 FAD dependent oxidoreductase H4J00_13125 PF05544 Proline racemase H4J00_13135 PF00448 SRP54-type protein, GTPase domain H4J00_13135 PF02881 SRP54-type protein, helical bundle domain H4J00_13145 PF10576 Iron-sulfur binding domain of endonuclease III H4J00_13145 PF00633 Helix-hairpin-helix motif H4J00_13145 PF00730 HhH-GPD superfamily base excision DNA repair protein H4J00_13145 PF14815 NUDIX domain H4J00_13150 PF04362 Bacterial Fe(2+) trafficking H4J00_13155 PF13426 PAS domain H4J00_13155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_13155 PF00072 Response regulator receiver domain H4J00_13180 PF08212 Lipocalin-like domain H4J00_13190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_13190 PF12806 Acetyl-CoA dehydrogenase C-terminal like H4J00_13190 PF02770 Acyl-CoA dehydrogenase, middle domain H4J00_13190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_13200 PF02780 Transketolase, C-terminal domain H4J00_13200 PF02779 Transketolase, pyrimidine binding domain H4J00_13200 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H4J00_13220 PF03808 Glycosyl transferase WecB/TagA/CpsF family H4J00_13235 PF14667 Polysaccharide biosynthesis C-terminal domain H4J00_13245 PF00534 Glycosyl transferases group 1 H4J00_13245 PF13439 Glycosyltransferase Family 4 H4J00_13265 PF02397 Bacterial sugar transferase H4J00_13285 PF13411 MerR HTH family regulatory protein H4J00_13290 PF00216 Bacterial DNA-binding protein H4J00_13295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H4J00_13295 PF03483 B3/4 domain H4J00_13295 PF01588 Putative tRNA binding domain H4J00_13295 PF03147 Ferredoxin-fold anticodon binding domain H4J00_13295 PF03484 tRNA synthetase B5 domain H4J00_13300 PF01409 tRNA synthetases class II core domain (F) H4J00_13300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H4J00_13305 PF00453 Ribosomal protein L20 H4J00_13310 PF01632 Ribosomal protein L35 H4J00_13315 PF00707 Translation initiation factor IF-3, C-terminal domain H4J00_13315 PF05198 Translation initiation factor IF-3, N-terminal domain H4J00_13320 PF03129 Anticodon binding domain H4J00_13320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H4J00_13320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H4J00_13320 PF02824 TGS domain H4J00_13325 PF01527 Transposase H4J00_13335 PF00521 DNA gyrase/topoisomerase IV, subunit A H4J00_13335 PF03989 DNA gyrase C-terminal domain, beta-propeller H4J00_13340 PF01008 Initiation factor 2 subunit family H4J00_13355 PF00152 tRNA synthetases class II (D, K and N) H4J00_13360 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H4J00_13360 PF12826 Helix-hairpin-helix motif H4J00_13360 PF00533 BRCA1 C Terminus (BRCT) domain H4J00_13360 PF03120 NAD-dependent DNA ligase OB-fold domain H4J00_13360 PF01653 NAD-dependent DNA ligase adenylation domain H4J00_13375 PF04354 ZipA, C-terminal FtsZ-binding domain H4J00_13380 PF02463 RecF/RecN/SMC N terminal domain H4J00_13385 PF01281 Ribosomal protein L9, N-terminal domain H4J00_13385 PF03948 Ribosomal protein L9, C-terminal domain H4J00_13390 PF01084 Ribosomal protein S18 H4J00_13395 PF01250 Ribosomal protein S6 H4J00_13400 PF01521 Iron-sulphur cluster biosynthesis H4J00_13405 PF00152 tRNA synthetases class II (D, K and N) H4J00_13405 PF01336 OB-fold nucleic acid binding domain H4J00_13430 PF00484 Carbonic anhydrase H4J00_13435 PF06052 3-hydroxyanthranilic acid dioxygenase H4J00_13445 PF00266 Aminotransferase class-V H4J00_13450 PF01494 FAD binding domain H4J00_13455 PF08411 Exonuclease C-terminal H4J00_13455 PF00929 Exonuclease H4J00_13465 PF00248 Aldo/keto reductase family H4J00_13480 PF01513 ATP-NAD kinase H4J00_13490 PF10672 S-adenosylmethionine-dependent methyltransferase H4J00_13490 PF02926 THUMP domain H4J00_13490 PF01170 Putative RNA methylase family UPF0020 H4J00_13530 PF00581 Rhodanese-like domain H4J00_13535 PF00293 NUDIX domain H4J00_13540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H4J00_13540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H4J00_13545 PF00378 Enoyl-CoA hydratase/isomerase H4J00_13555 PF00730 HhH-GPD superfamily base excision DNA repair protein H4J00_13555 PF10576 Iron-sulfur binding domain of endonuclease III H4J00_13555 PF00633 Helix-hairpin-helix motif H4J00_13565 PF00484 Carbonic anhydrase H4J00_13580 PF12849 PBP superfamily domain H4J00_13585 PF12849 PBP superfamily domain H4J00_13590 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_13595 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_13600 PF00005 ABC transporter H4J00_13605 PF01895 PhoU domain H4J00_13615 PF00929 Exonuclease H4J00_13625 PF00588 SpoU rRNA Methylase family H4J00_13625 PF08032 RNA 2'-O ribose methyltransferase substrate binding H4J00_13640 PF17876 Cold shock domain H4J00_13640 PF08461 Ribonuclease R winged-helix domain H4J00_13640 PF08206 Ribonuclease B OB domain H4J00_13640 PF00773 RNB domain H4J00_13640 PF00575 S1 RNA binding domain H4J00_13665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H4J00_13665 PF02770 Acyl-CoA dehydrogenase, middle domain H4J00_13665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H4J00_13670 PF01209 ubiE/COQ5 methyltransferase family H4J00_13690 PF00294 pfkB family carbohydrate kinase H4J00_13695 PF07690 Major Facilitator Superfamily H4J00_13700 PF00356 Bacterial regulatory proteins, lacI family H4J00_13715 PF04102 SlyX H4J00_13720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H4J00_13720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H4J00_13720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H4J00_13725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H4J00_13725 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H4J00_13730 PF00255 Glutathione peroxidase H4J00_13740 PF00392 Bacterial regulatory proteins, gntR family H4J00_13745 PF00005 ABC transporter H4J00_13770 PF00206 Lyase H4J00_13770 PF10415 Fumarase C C-terminus H4J00_13785 PF08328 Adenylosuccinate lyase C-terminal H4J00_13785 PF00206 Lyase H4J00_13805 PF08007 Cupin superfamily protein H4J00_13815 PF16078 2-oxoglutarate dehydrogenase N-terminus H4J00_13815 PF00676 Dehydrogenase E1 component H4J00_13815 PF16870 2-oxoglutarate dehydrogenase C-terminal H4J00_13815 PF02779 Transketolase, pyrimidine binding domain H4J00_13820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H4J00_13820 PF02817 e3 binding domain H4J00_13820 PF00364 Biotin-requiring enzyme H4J00_13825 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_13825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H4J00_13835 PF03641 Possible lysine decarboxylase H4J00_13840 PF01205 Uncharacterized protein family UPF0029 H4J00_13845 PF00664 ABC transporter transmembrane region H4J00_13845 PF00005 ABC transporter H4J00_13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_13855 PF03466 LysR substrate binding domain H4J00_13880 PF08543 Phosphomethylpyrimidine kinase H4J00_13885 PF01556 DnaJ C terminal domain H4J00_13885 PF00226 DnaJ domain H4J00_13885 PF00684 DnaJ central domain H4J00_13890 PF00012 Hsp70 protein H4J00_13895 PF01025 GrpE H4J00_13900 PF01628 HrcA protein C terminal domain H4J00_13900 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding H4J00_13905 PF02463 RecF/RecN/SMC N terminal domain H4J00_13910 PF01475 Ferric uptake regulator family H4J00_13915 PF04355 SmpA / OmlA family H4J00_13920 PF03658 RnfH family Ubiquitin H4J00_13925 PF03364 Polyketide cyclase / dehydrase and lipid transport H4J00_13930 PF01668 SmpB protein H4J00_13935 PF00082 Subtilase family H4J00_13990 PF03377 TAL effector repeat H4J00_13995 PF03377 TAL effector repeat H4J00_14000 PF03377 TAL effector repeat H4J00_14005 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_14005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H4J00_14010 PF01266 FAD dependent oxidoreductase H4J00_14015 PF04235 Protein of unknown function (DUF418) H4J00_14020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H4J00_14025 PF00877 NlpC/P60 family H4J00_14030 PF00877 NlpC/P60 family H4J00_14050 PF00375 Sodium:dicarboxylate symporter family H4J00_14055 PF00245 Alkaline phosphatase H4J00_14060 PF09179 TilS substrate binding domain H4J00_14060 PF11734 TilS substrate C-terminal domain H4J00_14060 PF01171 PP-loop family H4J00_14065 PF02609 Exonuclease VII small subunit H4J00_14070 PF00348 Polyprenyl synthetase H4J00_14075 PF14521 Lysine-specific metallo-endopeptidase H4J00_14095 PF01523 Putative modulator of DNA gyrase H4J00_14100 PF04751 Protein of unknown function (DUF615) H4J00_14105 PF01523 Putative modulator of DNA gyrase H4J00_14115 PF13502 AsmA-like C-terminal region H4J00_14115 PF13116 Protein of unknown function H4J00_14120 PF10150 Ribonuclease E/G family H4J00_14120 PF00575 S1 RNA binding domain H4J00_14125 PF02545 Maf-like protein H4J00_14130 PF04402 Protein of unknown function (DUF541) H4J00_14155 PF02590 Predicted SPOUT methyltransferase H4J00_14175 PF01467 Cytidylyltransferase-like H4J00_14190 PF08264 Anticodon-binding domain of tRNA H4J00_14190 PF00133 tRNA synthetases class I (I, L, M and V) H4J00_14190 PF13603 Leucyl-tRNA synthetase, Domain 2 H4J00_14200 PF00085 Thioredoxin H4J00_14265 PF00664 ABC transporter transmembrane region H4J00_14265 PF00005 ABC transporter H4J00_14275 PF00873 AcrB/AcrD/AcrF family H4J00_14290 PF02321 Outer membrane efflux protein H4J00_14295 PF00072 Response regulator receiver domain H4J00_14295 PF00486 Transcriptional regulatory protein, C terminal H4J00_14300 PF00672 HAMP domain H4J00_14300 PF00512 His Kinase A (phospho-acceptor) domain H4J00_14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_14305 PF00999 Sodium/hydrogen exchanger family H4J00_14310 PF00144 Beta-lactamase H4J00_14315 PF03737 Aldolase/RraA H4J00_14335 PF01479 S4 domain H4J00_14335 PF00849 RNA pseudouridylate synthase H4J00_14340 PF00990 Diguanylate cyclase, GGDEF domain H4J00_14340 PF08448 PAS fold H4J00_14340 PF00563 EAL domain H4J00_14345 PF00271 Helicase conserved C-terminal domain H4J00_14345 PF00270 DEAD/DEAH box helicase H4J00_14345 PF03880 DbpA RNA binding domain H4J00_14390 PF00730 HhH-GPD superfamily base excision DNA repair protein H4J00_14390 PF06029 AlkA N-terminal domain H4J00_14395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H4J00_14395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H4J00_14405 PF00654 Voltage gated chloride channel H4J00_14410 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_14410 PF00107 Zinc-binding dehydrogenase H4J00_14425 PF07715 TonB-dependent Receptor Plug Domain H4J00_14425 PF00593 TonB dependent receptor H4J00_14465 PF01475 Ferric uptake regulator family H4J00_14470 PF00749 tRNA synthetases class I (E and Q), catalytic domain H4J00_14480 PF00795 Carbon-nitrogen hydrolase H4J00_14500 PF00512 His Kinase A (phospho-acceptor) domain H4J00_14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_14500 PF00672 HAMP domain H4J00_14510 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H4J00_14520 PF02559 CarD-like/TRCF domain H4J00_14520 PF00270 DEAD/DEAH box helicase H4J00_14520 PF17757 UvrB interaction domain H4J00_14520 PF00271 Helicase conserved C-terminal domain H4J00_14520 PF03461 TRCF domain H4J00_14535 PF01584 CheW-like domain H4J00_14535 PF09078 CheY binding H4J00_14535 PF02895 Signal transducing histidine kinase, homodimeric domain H4J00_14535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_14535 PF01627 Hpt domain H4J00_14540 PF02203 Tar ligand binding domain homologue H4J00_14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H4J00_14540 PF00672 HAMP domain H4J00_14545 PF01584 CheW-like domain H4J00_14550 PF00563 EAL domain H4J00_14550 PF13426 PAS domain H4J00_14550 PF00990 Diguanylate cyclase, GGDEF domain H4J00_14555 PF01739 CheR methyltransferase, SAM binding domain H4J00_14555 PF03705 CheR methyltransferase, all-alpha domain H4J00_14560 PF01339 CheB methylesterase H4J00_14560 PF00072 Response regulator receiver domain H4J00_14570 PF04717 Type VI secretion system, phage-baseplate injector H4J00_14580 PF03377 TAL effector repeat H4J00_14590 PF03377 TAL effector repeat H4J00_14615 PF04717 Type VI secretion system, phage-baseplate injector H4J00_14620 PF03377 TAL effector repeat H4J00_14630 PF00300 Histidine phosphatase superfamily (branch 1) H4J00_14635 PF04493 Endonuclease V H4J00_14645 PF02678 Pirin H4J00_14645 PF05726 Pirin C-terminal cupin domain H4J00_14705 PF04717 Type VI secretion system, phage-baseplate injector H4J00_14705 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_14705 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_14735 PF04717 Type VI secretion system, phage-baseplate injector H4J00_14745 PF05726 Pirin C-terminal cupin domain H4J00_14745 PF02678 Pirin H4J00_14750 PF13722 5TM C-terminal transporter carbon starvation CstA H4J00_14750 PF02554 Carbon starvation protein CstA H4J00_14755 PF04328 Selenoprotein, putative H4J00_14805 PF13478 XdhC Rossmann domain H4J00_14805 PF02625 XdhC and CoxI family H4J00_14810 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase H4J00_14810 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain H4J00_14815 PF03450 CO dehydrogenase flavoprotein C-terminal domain H4J00_14815 PF00941 FAD binding domain in molybdopterin dehydrogenase H4J00_14820 PF00111 2Fe-2S iron-sulfur cluster binding domain H4J00_14820 PF01799 [2Fe-2S] binding domain H4J00_14820 PF10518 TAT (twin-arginine translocation) pathway signal sequence H4J00_14830 PF00360 Phytochrome region H4J00_14830 PF01590 GAF domain H4J00_14830 PF00563 EAL domain H4J00_14830 PF00990 Diguanylate cyclase, GGDEF domain H4J00_14835 PF00436 Single-strand binding protein family H4J00_14840 PF00348 Polyprenyl synthetase H4J00_14850 PF08245 Mur ligase middle domain H4J00_14865 PF00696 Amino acid kinase family H4J00_14865 PF01842 ACT domain H4J00_14875 PF02567 Phenazine biosynthesis-like protein H4J00_14885 PF02566 OsmC-like protein H4J00_14895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H4J00_14895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H4J00_14900 PF03652 Holliday junction resolvase H4J00_14905 PF02622 Uncharacterized ACR, COG1678 H4J00_14915 PF13302 Acetyltransferase (GNAT) domain H4J00_14915 PF00117 Glutamine amidotransferase class-I H4J00_14915 PF00958 GMP synthase C terminal domain H4J00_14915 PF03352 Methyladenine glycosylase H4J00_14915 PF13673 Acetyltransferase (GNAT) domain H4J00_14935 PF00437 Type II/IV secretion system protein H4J00_14940 PF00437 Type II/IV secretion system protein H4J00_14945 PF01168 Alanine racemase, N-terminal domain H4J00_14950 PF03807 NADP oxidoreductase coenzyme F420-dependent H4J00_14950 PF14748 Pyrroline-5-carboxylate reductase dimerisation H4J00_15000 PF02082 Transcriptional regulator H4J00_15005 PF01458 Uncharacterized protein family (UPF0051) H4J00_15010 PF00005 ABC transporter H4J00_15015 PF01458 Uncharacterized protein family (UPF0051) H4J00_15020 PF00266 Aminotransferase class-V H4J00_15030 PF00355 Rieske [2Fe-2S] domain H4J00_15050 PF07687 Peptidase dimerisation domain H4J00_15050 PF01546 Peptidase family M20/M25/M40 H4J00_15065 PF01636 Phosphotransferase enzyme family H4J00_15070 PF00483 Nucleotidyl transferase H4J00_15075 PF00308 Bacterial dnaA protein H4J00_15080 PF01594 AI-2E family transporter H4J00_15090 PF00586 AIR synthase related protein, N-terminal domain H4J00_15090 PF02769 AIR synthase related protein, C-terminal domain H4J00_15105 PF00551 Formyl transferase H4J00_15125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H4J00_15130 PF01722 BolA-like protein H4J00_15135 PF00571 CBS domain H4J00_15135 PF01380 SIS domain H4J00_15150 PF03968 OstA-like protein H4J00_15155 PF00005 ABC transporter H4J00_15160 PF04963 Sigma-54 factor, core binding domain H4J00_15160 PF00309 Sigma-54 factor, Activator interacting domain (AID) H4J00_15160 PF04552 Sigma-54, DNA binding domain H4J00_15165 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H4J00_15170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H4J00_15175 PF07475 HPr Serine kinase C-terminal domain H4J00_15175 PF02603 HPr Serine kinase N terminus H4J00_15180 PF03668 P-loop ATPase protein family H4J00_15190 PF00381 PTS HPr component phosphorylation site H4J00_15195 PF05524 PEP-utilising enzyme, N-terminal H4J00_15195 PF02896 PEP-utilising enzyme, TIM barrel domain H4J00_15195 PF00391 PEP-utilising enzyme, mobile domain H4J00_15200 PF00571 CBS domain H4J00_15200 PF01769 Divalent cation transporter H4J00_15200 PF03448 MgtE intracellular N domain H4J00_15205 PF00756 Putative esterase H4J00_15210 PF02322 Cytochrome bd terminal oxidase subunit II H4J00_15215 PF01654 Cytochrome bd terminal oxidase subunit I H4J00_15225 PF00324 Amino acid permease H4J00_15235 PF00561 alpha/beta hydrolase fold H4J00_15240 PF00196 Bacterial regulatory proteins, luxR family H4J00_15245 PF00324 Amino acid permease H4J00_15260 PF12706 Beta-lactamase superfamily domain H4J00_15265 PF04820 Tryptophan halogenase H4J00_15295 PF00376 MerR family regulatory protein H4J00_15295 PF09278 MerR, DNA binding H4J00_15305 PF03738 Glutathionylspermidine synthase preATP-grasp H4J00_15330 PF04012 PspA/IM30 family H4J00_15340 PF01243 Pyridoxamine 5'-phosphate oxidase H4J00_15340 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H4J00_15345 PF01202 Shikimate kinase H4J00_15350 PF01761 3-dehydroquinate synthase H4J00_15360 PF01208 Uroporphyrinogen decarboxylase (URO-D) H4J00_15415 PF06715 Gp5 C-terminal repeat (3 copies) H4J00_15415 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15435 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15440 PF01609 Transposase DDE domain H4J00_15440 PF05598 Transposase domain (DUF772) H4J00_15495 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15495 PF06715 Gp5 C-terminal repeat (3 copies) H4J00_15505 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_15505 PF07724 AAA domain (Cdc48 subfamily) H4J00_15505 PF17871 AAA lid domain H4J00_15505 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_15515 PF05947 Type VI secretion system, TssF H4J00_15530 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H4J00_15535 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H4J00_15560 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_15560 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_15560 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_15575 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_15575 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15690 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_15690 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_15690 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15710 PF04717 Type VI secretion system, phage-baseplate injector H4J00_15725 PF00691 OmpA family H4J00_15725 PF04972 BON domain H4J00_15735 PF06744 Type VI secretion protein IcmF C-terminal H4J00_15735 PF14331 ImcF-related N-terminal domain H4J00_15735 PF06761 Intracellular multiplication and human macrophage-killing H4J00_15770 PF02222 ATP-grasp domain H4J00_15795 PF00730 HhH-GPD superfamily base excision DNA repair protein H4J00_15810 PF00072 Response regulator receiver domain H4J00_15810 PF00196 Bacterial regulatory proteins, luxR family H4J00_15815 PF07730 Histidine kinase H4J00_15825 PF03775 Septum formation inhibitor MinC, C-terminal domain H4J00_15825 PF05209 Septum formation inhibitor MinC, N-terminal domain H4J00_15830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H4J00_15835 PF03776 Septum formation topological specificity factor MinE H4J00_15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_15845 PF08521 Two-component sensor kinase N-terminal H4J00_15845 PF00512 His Kinase A (phospho-acceptor) domain H4J00_15850 PF00486 Transcriptional regulatory protein, C terminal H4J00_15850 PF00072 Response regulator receiver domain H4J00_15855 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase H4J00_15865 PF00884 Sulfatase H4J00_15865 PF08019 Phosphoethanolamine transferase EptA/EptB H4J00_15885 PF00005 ABC transporter H4J00_15885 PF03412 Peptidase C39 family H4J00_15885 PF00664 ABC transporter transmembrane region H4J00_15905 PF02347 Glycine cleavage system P-protein H4J00_15930 PF00199 Catalase H4J00_15930 PF06628 Catalase-related immune-responsive H4J00_15930 PF18011 C-terminal domain found in long catalases H4J00_15965 PF02311 AraC-like ligand binding domain H4J00_15965 PF12833 Helix-turn-helix domain H4J00_15975 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region H4J00_15975 PF07676 WD40-like Beta Propeller Repeat H4J00_15975 PF00326 Prolyl oligopeptidase family H4J00_15990 PF03169 OPT oligopeptide transporter protein H4J00_16005 PF02811 PHP domain H4J00_16005 PF07733 Bacterial DNA polymerase III alpha NTPase domain H4J00_16005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H4J00_16005 PF14579 Helix-hairpin-helix motif H4J00_16020 PF00717 Peptidase S24-like H4J00_16020 PF01726 LexA DNA binding domain H4J00_16050 PF00300 Histidine phosphatase superfamily (branch 1) H4J00_16050 PF13456 Reverse transcriptase-like H4J00_16085 PF01609 Transposase DDE domain H4J00_16085 PF05598 Transposase domain (DUF772) H4J00_16090 PF01420 Type I restriction modification DNA specificity domain H4J00_16095 PF12161 HsdM N-terminal domain H4J00_16095 PF02384 N-6 DNA Methylase H4J00_16110 PF08463 EcoEI R protein C-terminal H4J00_16110 PF00271 Helicase conserved C-terminal domain H4J00_16110 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H4J00_16110 PF04851 Type III restriction enzyme, res subunit H4J00_16125 PF04851 Type III restriction enzyme, res subunit H4J00_16125 PF08463 EcoEI R protein C-terminal H4J00_16125 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) H4J00_16125 PF00271 Helicase conserved C-terminal domain H4J00_16130 PF02661 Fic/DOC family H4J00_16135 PF02384 N-6 DNA Methylase H4J00_16140 PF01420 Type I restriction modification DNA specificity domain H4J00_16155 PF00440 Bacterial regulatory proteins, tetR family H4J00_16170 PF01433 Peptidase family M1 domain H4J00_16170 PF11838 ERAP1-like C-terminal domain H4J00_16175 PF00709 Adenylosuccinate synthetase H4J00_16185 PF01145 SPFH domain / Band 7 family H4J00_16190 PF01145 SPFH domain / Band 7 family H4J00_16190 PF12221 Bacterial membrane protein N terminal H4J00_16195 PF00072 Response regulator receiver domain H4J00_16200 PF01556 DnaJ C terminal domain H4J00_16200 PF00226 DnaJ domain H4J00_16210 PF08534 Redoxin H4J00_16250 PF07715 TonB-dependent Receptor Plug Domain H4J00_16250 PF00593 TonB dependent receptor H4J00_16255 PF04303 PrpF protein H4J00_16265 PF00330 Aconitase family (aconitate hydratase) H4J00_16265 PF00694 Aconitase C-terminal domain H4J00_16270 PF00285 Citrate synthase, C-terminal domain H4J00_16280 PF02954 Bacterial regulatory protein, Fis family H4J00_16280 PF06506 Propionate catabolism activator H4J00_16280 PF00158 Sigma-54 interaction domain H4J00_16290 PF05598 Transposase domain (DUF772) H4J00_16290 PF01609 Transposase DDE domain H4J00_16310 PF09115 DNA polymerase III, delta subunit, C terminal H4J00_16315 PF02618 YceG-like family H4J00_16320 PF04715 Anthranilate synthase component I, N terminal region H4J00_16320 PF00425 chorismate binding enzyme H4J00_16325 PF00109 Beta-ketoacyl synthase, N-terminal domain H4J00_16325 PF02801 Beta-ketoacyl synthase, C-terminal domain H4J00_16330 PF00550 Phosphopantetheine attachment site H4J00_16340 PF00698 Acyl transferase domain H4J00_16350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H4J00_16350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H4J00_16355 PF01783 Ribosomal L32p protein family H4J00_16360 PF02620 Large ribosomal RNA subunit accumulation protein YceD H4J00_16365 PF02545 Maf-like protein H4J00_16380 PF17863 AAA lid domain H4J00_16380 PF07726 ATPase family associated with various cellular activities (AAA) H4J00_16390 PF11992 Domain of unknown function (DUF3488) H4J00_16390 PF13559 Domain of unknown function (DUF4129) H4J00_16390 PF01841 Transglutaminase-like superfamily H4J00_16400 PF01230 HIT domain H4J00_16405 PF02132 RecR protein H4J00_16405 PF13662 Toprim domain H4J00_16410 PF02575 YbaB/EbfC DNA-binding family H4J00_16415 PF12169 DNA polymerase III subunits gamma and tau domain III H4J00_16415 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H4J00_16415 PF12170 DNA polymerase III tau subunit V interacting with alpha H4J00_16430 PF02391 MoaE protein H4J00_16435 PF02597 ThiS family H4J00_16440 PF01967 MoaC family H4J00_16450 PF06463 Molybdenum Cofactor Synthesis C H4J00_16450 PF04055 Radical SAM superfamily H4J00_16455 PF00753 Metallo-beta-lactamase superfamily H4J00_16455 PF12706 Beta-lactamase superfamily domain H4J00_16465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H4J00_16485 PF00929 Exonuclease H4J00_16490 PF00075 RNase H H4J00_16500 PF00753 Metallo-beta-lactamase superfamily H4J00_16500 PF16123 Hydroxyacylglutathione hydrolase C-terminus H4J00_16505 PF01476 LysM domain H4J00_16505 PF05257 CHAP domain H4J00_16530 PF00216 Bacterial DNA-binding protein H4J00_16535 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_16535 PF05362 Lon protease (S16) C-terminal proteolytic domain H4J00_16535 PF02190 ATP-dependent protease La (LON) substrate-binding domain H4J00_16540 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_16540 PF07724 AAA domain (Cdc48 subfamily) H4J00_16540 PF06689 ClpX C4-type zinc finger H4J00_16545 PF00574 Clp protease H4J00_16550 PF05697 Bacterial trigger factor protein (TF) H4J00_16550 PF05698 Bacterial trigger factor protein (TF) C-terminus H4J00_16595 PF18324 Hypothetical protein TT1725 H4J00_16595 PF00180 Isocitrate/isopropylmalate dehydrogenase H4J00_16605 PF00462 Glutaredoxin H4J00_16610 PF01435 Peptidase family M48 H4J00_16610 PF13181 Tetratricopeptide repeat H4J00_16615 PF00072 Response regulator receiver domain H4J00_16615 PF00486 Transcriptional regulatory protein, C terminal H4J00_16620 PF00989 PAS fold H4J00_16620 PF00512 His Kinase A (phospho-acceptor) domain H4J00_16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_16620 PF11808 Phosphate regulon sensor protein PhoR H4J00_16625 PF02503 Polyphosphate kinase middle domain H4J00_16625 PF17941 Polyphosphate kinase C-terminal domain 1 H4J00_16625 PF13089 Polyphosphate kinase N-terminal domain H4J00_16625 PF13090 Polyphosphate kinase C-terminal domain 2 H4J00_16630 PF02541 Ppx/GppA phosphatase family H4J00_16635 PF13439 Glycosyltransferase Family 4 H4J00_16635 PF00534 Glycosyl transferases group 1 H4J00_16640 PF01569 PAP2 superfamily H4J00_16645 PF00149 Calcineurin-like phosphoesterase H4J00_16670 PF04305 Protein of unknown function (DUF455) H4J00_16675 PF00156 Phosphoribosyl transferase domain H4J00_16690 PF08245 Mur ligase middle domain H4J00_16690 PF02875 Mur ligase family, glutamate ligase domain H4J00_16695 PF00300 Histidine phosphatase superfamily (branch 1) H4J00_16710 PF04185 Phosphoesterase family H4J00_16710 PF05506 Domain of unknown function (DUF756) H4J00_16720 PF00107 Zinc-binding dehydrogenase H4J00_16720 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_16730 PF17850 CysA C-terminal regulatory domain H4J00_16730 PF12857 TOBE-like domain H4J00_16730 PF00005 ABC transporter H4J00_16735 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_16740 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_16750 PF00155 Aminotransferase class I and II H4J00_16760 PF00849 RNA pseudouridylate synthase H4J00_16770 PF00691 OmpA family H4J00_16770 PF05736 OprF membrane domain H4J00_16775 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_16775 PF00107 Zinc-binding dehydrogenase H4J00_16780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H4J00_16780 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_16790 PF00480 ROK family H4J00_16810 PF03009 Glycerophosphoryl diester phosphodiesterase family H4J00_16830 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H4J00_16830 PF00056 lactate/malate dehydrogenase, NAD binding domain H4J00_16835 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H4J00_16840 PF00679 Elongation factor G C-terminus H4J00_16840 PF00009 Elongation factor Tu GTP binding domain H4J00_16840 PF03144 Elongation factor Tu domain 2 H4J00_16860 PF01474 Class-II DAHP synthetase family H4J00_16875 PF02600 Disulfide bond formation protein DsbB H4J00_16880 PF01196 Ribosomal protein L17 H4J00_16885 PF01000 RNA polymerase Rpb3/RpoA insert domain H4J00_16885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H4J00_16885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H4J00_16890 PF01479 S4 domain H4J00_16890 PF00163 Ribosomal protein S4/S9 N-terminal domain H4J00_16895 PF00411 Ribosomal protein S11 H4J00_16900 PF00416 Ribosomal protein S13/S18 H4J00_16905 PF00344 SecY translocase H4J00_16910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H4J00_16915 PF00327 Ribosomal protein L30p/L7e H4J00_16920 PF00333 Ribosomal protein S5, N-terminal domain H4J00_16920 PF03719 Ribosomal protein S5, C-terminal domain H4J00_16925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H4J00_16930 PF00347 Ribosomal protein L6 H4J00_16935 PF00410 Ribosomal protein S8 H4J00_16940 PF00253 Ribosomal protein S14p/S29e H4J00_16945 PF00281 Ribosomal protein L5 H4J00_16945 PF00673 ribosomal L5P family C-terminus H4J00_16950 PF00467 KOW motif H4J00_16950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H4J00_16955 PF00238 Ribosomal protein L14p/L23e H4J00_16960 PF00366 Ribosomal protein S17 H4J00_16965 PF00831 Ribosomal L29 protein H4J00_16970 PF00252 Ribosomal protein L16p/L10e H4J00_16975 PF07650 KH domain H4J00_16975 PF00189 Ribosomal protein S3, C-terminal domain H4J00_16980 PF00237 Ribosomal protein L22p/L17e H4J00_16985 PF00203 Ribosomal protein S19 H4J00_16990 PF03947 Ribosomal Proteins L2, C-terminal domain H4J00_16990 PF00181 Ribosomal Proteins L2, RNA binding domain H4J00_16995 PF00276 Ribosomal protein L23 H4J00_17000 PF00573 Ribosomal protein L4/L1 family H4J00_17005 PF00297 Ribosomal protein L3 H4J00_17010 PF00338 Ribosomal protein S10p/S20e H4J00_17020 PF03143 Elongation factor Tu C-terminal domain H4J00_17020 PF03144 Elongation factor Tu domain 2 H4J00_17020 PF00009 Elongation factor Tu GTP binding domain H4J00_17025 PF14492 Elongation Factor G, domain II H4J00_17025 PF03144 Elongation factor Tu domain 2 H4J00_17025 PF00679 Elongation factor G C-terminus H4J00_17025 PF03764 Elongation factor G, domain IV H4J00_17025 PF00009 Elongation factor Tu GTP binding domain H4J00_17030 PF00177 Ribosomal protein S7p/S5e H4J00_17035 PF00164 Ribosomal protein S12/S23 H4J00_17040 PF04997 RNA polymerase Rpb1, domain 1 H4J00_17040 PF00623 RNA polymerase Rpb1, domain 2 H4J00_17040 PF04983 RNA polymerase Rpb1, domain 3 H4J00_17040 PF05000 RNA polymerase Rpb1, domain 4 H4J00_17040 PF04998 RNA polymerase Rpb1, domain 5 H4J00_17045 PF04561 RNA polymerase Rpb2, domain 2 H4J00_17045 PF04565 RNA polymerase Rpb2, domain 3 H4J00_17045 PF10385 RNA polymerase beta subunit external 1 domain H4J00_17045 PF00562 RNA polymerase Rpb2, domain 6 H4J00_17045 PF04560 RNA polymerase Rpb2, domain 7 H4J00_17045 PF04563 RNA polymerase beta subunit H4J00_17050 PF16320 Ribosomal protein L7/L12 dimerisation domain H4J00_17050 PF00542 Ribosomal protein L7/L12 C-terminal domain H4J00_17055 PF00466 Ribosomal protein L10 H4J00_17060 PF00687 Ribosomal protein L1p/L10e family H4J00_17065 PF03946 Ribosomal protein L11, N-terminal domain H4J00_17065 PF00298 Ribosomal protein L11, RNA binding domain H4J00_17070 PF00467 KOW motif H4J00_17070 PF02357 Transcription termination factor nusG H4J00_17075 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H4J00_17085 PF03143 Elongation factor Tu C-terminal domain H4J00_17085 PF03144 Elongation factor Tu domain 2 H4J00_17085 PF00009 Elongation factor Tu GTP binding domain H4J00_17105 PF01926 50S ribosome-binding GTPase H4J00_17105 PF06071 Protein of unknown function (DUF933) H4J00_17110 PF01195 Peptidyl-tRNA hydrolase H4J00_17115 PF01386 Ribosomal L25p family H4J00_17115 PF14693 Ribosomal protein TL5, C-terminal domain H4J00_17120 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H4J00_17120 PF14572 Phosphoribosyl synthetase-associated domain H4J00_17130 PF00288 GHMP kinases N terminal domain H4J00_17130 PF08544 GHMP kinases C terminal H4J00_17135 PF03550 Outer membrane lipoprotein LolB H4J00_17145 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H4J00_17145 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H4J00_17145 PF01488 Shikimate / quinate 5-dehydrogenase H4J00_17150 PF03462 PCRF domain H4J00_17150 PF00472 RF-1 domain H4J00_17160 PF00994 Probable molybdopterin binding domain H4J00_17165 PF03976 Polyphosphate kinase 2 (PPK2) H4J00_17175 PF00708 Acylphosphatase H4J00_17180 PF08534 Redoxin H4J00_17185 PF03631 Virulence factor BrkB H4J00_17190 PF03358 NADPH-dependent FMN reductase H4J00_17215 PF04073 Aminoacyl-tRNA editing domain H4J00_17225 PF01063 Amino-transferase class IV H4J00_17250 PF02233 NAD(P) transhydrogenase beta subunit H4J00_17255 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H4J00_17280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H4J00_17280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H4J00_17280 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H4J00_17295 PF01612 3'-5' exonuclease H4J00_17295 PF00476 DNA polymerase family A H4J00_17295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H4J00_17295 PF01367 5'-3' exonuclease, C-terminal SAM fold H4J00_17300 PF00293 NUDIX domain H4J00_17310 PF00561 alpha/beta hydrolase fold H4J00_17330 PF17827 PrmC N-terminal domain H4J00_17330 PF05175 Methyltransferase small domain H4J00_17335 PF00578 AhpC/TSA family H4J00_17335 PF10417 C-terminal domain of 1-Cys peroxiredoxin H4J00_17340 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_17340 PF13192 Thioredoxin domain H4J00_17345 PF03466 LysR substrate binding domain H4J00_17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_17355 PF00923 Transaldolase/Fructose-6-phosphate aldolase H4J00_17360 PF01625 Peptide methionine sulfoxide reductase H4J00_17370 PF00196 Bacterial regulatory proteins, luxR family H4J00_17370 PF00072 Response regulator receiver domain H4J00_17375 PF00072 Response regulator receiver domain H4J00_17375 PF00990 Diguanylate cyclase, GGDEF domain H4J00_17390 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H4J00_17390 PF00749 tRNA synthetases class I (E and Q), catalytic domain H4J00_17400 PF00892 EamA-like transporter family H4J00_17420 PF01728 FtsJ-like methyltransferase H4J00_17420 PF18125 RlmM ferredoxin-like domain H4J00_17425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H4J00_17425 PF02894 Oxidoreductase family, C-terminal alpha/beta domain H4J00_17430 PF08450 SMP-30/Gluconolactonase/LRE-like region H4J00_17450 PF00378 Enoyl-CoA hydratase/isomerase H4J00_17455 PF00171 Aldehyde dehydrogenase family H4J00_17460 PF13193 AMP-binding enzyme C-terminal domain H4J00_17460 PF00501 AMP-binding enzyme H4J00_17465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_17465 PF03466 LysR substrate binding domain H4J00_17470 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit H4J00_17470 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase H4J00_17475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase H4J00_17500 PF01494 FAD binding domain H4J00_17505 PF01494 FAD binding domain H4J00_17515 PF01923 Cobalamin adenosyltransferase H4J00_17520 PF00850 Histone deacetylase domain H4J00_17525 PF04453 LPS transport system D H4J00_17525 PF03968 OstA-like protein H4J00_17530 PF00639 PPIC-type PPIASE domain H4J00_17530 PF09312 SurA N-terminal domain H4J00_17535 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H4J00_17545 PF00398 Ribosomal RNA adenine dimethylase H4J00_17550 PF04379 ApaG domain H4J00_17555 PF00149 Calcineurin-like phosphoesterase H4J00_17560 PF00186 Dihydrofolate reductase H4J00_17570 PF00303 Thymidylate synthase H4J00_17575 PF01790 Prolipoprotein diacylglyceryl transferase H4J00_17595 PF01219 Prokaryotic diacylglycerol kinase H4J00_17610 PF00512 His Kinase A (phospho-acceptor) domain H4J00_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_17610 PF08521 Two-component sensor kinase N-terminal H4J00_17615 PF00072 Response regulator receiver domain H4J00_17615 PF00486 Transcriptional regulatory protein, C terminal H4J00_17620 PF13472 GDSL-like Lipase/Acylhydrolase family H4J00_17625 PF00005 ABC transporter H4J00_17635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family H4J00_17650 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_17670 PF00248 Aldo/keto reductase family H4J00_17680 PF07670 Nucleoside recognition H4J00_17680 PF07662 Na+ dependent nucleoside transporter C-terminus H4J00_17680 PF01773 Na+ dependent nucleoside transporter N-terminus H4J00_17685 PF00294 pfkB family carbohydrate kinase H4J00_17695 PF01207 Dihydrouridine synthase (Dus) H4J00_17710 PF02773 S-adenosylmethionine synthetase, C-terminal domain H4J00_17710 PF00438 S-adenosylmethionine synthetase, N-terminal domain H4J00_17710 PF02772 S-adenosylmethionine synthetase, central domain H4J00_17715 PF00328 Histidine phosphatase superfamily (branch 2) H4J00_17740 PF00311 Phosphoenolpyruvate carboxylase H4J00_17750 PF05221 S-adenosyl-L-homocysteine hydrolase H4J00_17750 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain H4J00_17755 PF13649 Methyltransferase domain H4J00_17785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H4J00_17795 PF09286 Pro-kumamolisin, activation domain H4J00_17795 PF00082 Subtilase family H4J00_17800 PF02801 Beta-ketoacyl synthase, C-terminal domain H4J00_17800 PF08659 KR domain H4J00_17800 PF00550 Phosphopantetheine attachment site H4J00_17800 PF14765 Polyketide synthase dehydratase H4J00_17800 PF00107 Zinc-binding dehydrogenase H4J00_17800 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_17800 PF16197 Ketoacyl-synthetase C-terminal extension H4J00_17800 PF00109 Beta-ketoacyl synthase, N-terminal domain H4J00_17800 PF00698 Acyl transferase domain H4J00_17810 PF02219 Methylenetetrahydrofolate reductase H4J00_17825 PF00293 NUDIX domain H4J00_17835 PF02810 SEC-C motif H4J00_17835 PF07517 SecA DEAD-like domain H4J00_17835 PF01043 SecA preprotein cross-linking domain H4J00_17835 PF07516 SecA Wing and Scaffold domain H4J00_17840 PF01551 Peptidase family M23 H4J00_17840 PF01476 LysM domain H4J00_17850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H4J00_17855 PF00091 Tubulin/FtsZ family, GTPase domain H4J00_17855 PF12327 FtsZ family, C-terminal domain H4J00_17865 PF02491 SHS2 domain inserted in FTSA H4J00_17870 PF08478 POTRA domain, FtsQ-type H4J00_17870 PF03799 Cell division protein FtsQ H4J00_17875 PF07478 D-ala D-ala ligase C-terminus H4J00_17875 PF01820 D-ala D-ala ligase N-terminus H4J00_17880 PF01225 Mur ligase family, catalytic domain H4J00_17880 PF02875 Mur ligase family, glutamate ligase domain H4J00_17880 PF08245 Mur ligase middle domain H4J00_17885 PF04101 Glycosyltransferase family 28 C-terminal domain H4J00_17885 PF03033 Glycosyltransferase family 28 N-terminal domain H4J00_17890 PF01098 Cell cycle protein H4J00_17895 PF00953 Glycosyl transferase family 4 H4J00_17900 PF02875 Mur ligase family, glutamate ligase domain H4J00_17900 PF08245 Mur ligase middle domain H4J00_17900 PF01225 Mur ligase family, catalytic domain H4J00_17905 PF01225 Mur ligase family, catalytic domain H4J00_17905 PF02875 Mur ligase family, glutamate ligase domain H4J00_17905 PF08245 Mur ligase middle domain H4J00_17910 PF03717 Penicillin-binding Protein dimerisation domain H4J00_17910 PF00905 Penicillin binding protein transpeptidase domain H4J00_17915 PF04999 Cell division protein FtsL H4J00_17920 PF01795 MraW methylase family H4J00_17925 PF02381 MraZ protein, putative antitoxin-like H4J00_17950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H4J00_17960 PF02021 Uncharacterised protein family UPF0102 H4J00_17965 PF04307 LexA-binding, inner membrane-associated putative hydrolase H4J00_17970 PF01565 FAD binding domain H4J00_17970 PF02913 FAD linked oxidases, C-terminal domain H4J00_17975 PF00072 Response regulator receiver domain H4J00_17975 PF00486 Transcriptional regulatory protein, C terminal H4J00_17980 PF00512 His Kinase A (phospho-acceptor) domain H4J00_17980 PF02702 Osmosensitive K+ channel His kinase sensor domain H4J00_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_17980 PF13492 GAF domain H4J00_17980 PF13493 Domain of unknown function (DUF4118) H4J00_17985 PF02669 K+-transporting ATPase, c chain H4J00_17995 PF03814 Potassium-transporting ATPase A subunit H4J00_18015 PF00586 AIR synthase related protein, N-terminal domain H4J00_18015 PF02769 AIR synthase related protein, C-terminal domain H4J00_18020 PF01029 NusB family H4J00_18025 PF00885 6,7-dimethyl-8-ribityllumazine synthase H4J00_18030 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H4J00_18030 PF00925 GTP cyclohydrolase II H4J00_18035 PF00677 Lumazine binding domain H4J00_18045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H4J00_18045 PF01872 RibD C-terminal domain H4J00_18060 PF03477 ATP cone domain H4J00_18070 PF00464 Serine hydroxymethyltransferase H4J00_18090 PF12848 ABC transporter H4J00_18090 PF00005 ABC transporter H4J00_18110 PF00756 Putative esterase H4J00_18120 PF00107 Zinc-binding dehydrogenase H4J00_18120 PF08240 Alcohol dehydrogenase GroES-like domain H4J00_18125 PF02583 Metal-sensitive transcriptional repressor H4J00_18135 PF00072 Response regulator receiver domain H4J00_18135 PF00486 Transcriptional regulatory protein, C terminal H4J00_18140 PF16527 Two-component sensor protein CpxA, periplasmic domain H4J00_18140 PF00672 HAMP domain H4J00_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_18140 PF00512 His Kinase A (phospho-acceptor) domain H4J00_18170 PF04107 Glutamate-cysteine ligase family 2(GCS2) H4J00_18180 PF01926 50S ribosome-binding GTPase H4J00_18185 PF00034 Cytochrome c H4J00_18225 PF01966 HD domain H4J00_18225 PF01743 Poly A polymerase head domain H4J00_18225 PF12627 Probable RNA and SrmB- binding site of polymerase A H4J00_18240 PF01522 Polysaccharide deacetylase H4J00_18240 PF14883 Hypothetical glycosyl hydrolase family 13 H4J00_18245 PF00535 Glycosyl transferase family 2 H4J00_18255 PF01979 Amidohydrolase family H4J00_18260 PF01380 SIS domain H4J00_18265 PF00356 Bacterial regulatory proteins, lacI family H4J00_18270 PF07690 Major Facilitator Superfamily H4J00_18275 PF00392 Bacterial regulatory proteins, gntR family H4J00_18275 PF07702 UTRA domain H4J00_18290 PF16355 Domain of unknown function (DUF4982) H4J00_18290 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H4J00_18290 PF02837 Glycosyl hydrolases family 2, sugar binding domain H4J00_18290 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 H4J00_18290 PF00703 Glycosyl hydrolases family 2 H4J00_18325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H4J00_18330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_18330 PF00512 His Kinase A (phospho-acceptor) domain H4J00_18335 PF00072 Response regulator receiver domain H4J00_18340 PF01590 GAF domain H4J00_18340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_18340 PF00512 His Kinase A (phospho-acceptor) domain H4J00_18340 PF08446 PAS fold H4J00_18340 PF00360 Phytochrome region H4J00_18345 PF04972 BON domain H4J00_18350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H4J00_18350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain H4J00_18355 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain H4J00_18355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H4J00_18390 PF01467 Cytidylyltransferase-like H4J00_18390 PF00293 NUDIX domain H4J00_18400 PF17804 Tail specific protease N-terminal domain H4J00_18400 PF03572 Peptidase family S41 H4J00_18400 PF11818 C-terminal domain of tail specific protease (DUF3340) H4J00_18400 PF00595 PDZ domain H4J00_18405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family H4J00_18405 PF04055 Radical SAM superfamily H4J00_18410 PF03099 Biotin/lipoate A/B protein ligase family H4J00_18415 PF04359 Protein of unknown function (DUF493) H4J00_18430 PF07943 Penicillin-binding protein 5, C-terminal domain H4J00_18430 PF00768 D-alanyl-D-alanine carboxypeptidase H4J00_18435 PF03330 Lytic transglycolase H4J00_18435 PF05036 Sporulation related domain H4J00_18440 PF13406 Transglycosylase SLT domain H4J00_18455 PF13683 Integrase core domain H4J00_18455 PF13276 HTH-like domain H4J00_18465 PF01476 LysM domain H4J00_18465 PF05257 CHAP domain H4J00_18470 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_18470 PF04717 Type VI secretion system, phage-baseplate injector H4J00_18470 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_18480 PF01510 N-acetylmuramoyl-L-alanine amidase H4J00_18480 PF01476 LysM domain H4J00_18480 PF01471 Putative peptidoglycan binding domain H4J00_18485 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) H4J00_18485 PF13296 Putative type VI secretion system Rhs element Vgr H4J00_18485 PF04717 Type VI secretion system, phage-baseplate injector H4J00_18495 PF01098 Cell cycle protein H4J00_18500 PF03717 Penicillin-binding Protein dimerisation domain H4J00_18500 PF00905 Penicillin binding protein transpeptidase domain H4J00_18510 PF04085 rod shape-determining protein MreC H4J00_18520 PF00294 pfkB family carbohydrate kinase H4J00_18535 PF01433 Peptidase family M1 domain H4J00_18535 PF11838 ERAP1-like C-terminal domain H4J00_18540 PF03707 Bacterial signalling protein N terminal repeat H4J00_18540 PF00990 Diguanylate cyclase, GGDEF domain H4J00_18540 PF00563 EAL domain H4J00_18545 PF01209 ubiE/COQ5 methyltransferase family H4J00_18555 PF13533 Biotin-lipoyl like H4J00_18560 PF13673 Acetyltransferase (GNAT) domain H4J00_18570 PF10431 C-terminal, D2-small domain, of ClpB protein H4J00_18570 PF00004 ATPase family associated with various cellular activities (AAA) H4J00_18570 PF07724 AAA domain (Cdc48 subfamily) H4J00_18575 PF00227 Proteasome subunit H4J00_18585 PF02899 Phage integrase, N-terminal SAM-like domain H4J00_18585 PF00589 Phage integrase family H4J00_18595 PF01678 Diaminopimelate epimerase H4J00_18605 PF04304 Protein of unknown function (DUF454) H4J00_18610 PF00326 Prolyl oligopeptidase family H4J00_18610 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H4J00_18615 PF00155 Aminotransferase class I and II H4J00_18625 PF00326 Prolyl oligopeptidase family H4J00_18625 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H4J00_18650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H4J00_18650 PF03900 Porphobilinogen deaminase, C-terminal domain H4J00_18655 PF04397 LytTr DNA-binding domain H4J00_18655 PF00072 Response regulator receiver domain H4J00_18660 PF07694 5TMR of 5TMR-LYT H4J00_18660 PF06580 Histidine kinase H4J00_18670 PF13632 Glycosyl transferase family group 2 H4J00_18675 PF01609 Transposase DDE domain H4J00_18675 PF05598 Transposase domain (DUF772) H4J00_18695 PF01740 STAS domain H4J00_18695 PF00916 Sulfate permease family H4J00_18715 PF00563 EAL domain H4J00_18715 PF00990 Diguanylate cyclase, GGDEF domain H4J00_18715 PF03707 Bacterial signalling protein N terminal repeat H4J00_18745 PF01204 Trehalase H4J00_18775 PF01544 CorA-like Mg2+ transporter protein H4J00_18785 PF00324 Amino acid permease H4J00_18805 PF03330 Lytic transglycolase H4J00_18810 PF00892 EamA-like transporter family H4J00_18825 PF07759 Protein of unknown function (DUF1615) H4J00_18865 PF00106 short chain dehydrogenase H4J00_18880 PF17831 Pyruvate dehydrogenase E1 component middle domain H4J00_18880 PF00456 Transketolase, thiamine diphosphate binding domain H4J00_18905 PF00793 DAHP synthetase I family H4J00_18915 PF07715 TonB-dependent Receptor Plug Domain H4J00_18915 PF00593 TonB dependent receptor H4J00_18930 PF00118 TCP-1/cpn60 chaperonin family H4J00_18935 PF00166 Chaperonin 10 Kd subunit H4J00_18960 PF03458 UPF0126 domain H4J00_18965 PF04545 Sigma-70, region 4 H4J00_18965 PF04542 Sigma-70 region 2 H4J00_18970 PF03167 Uracil DNA glycosylase superfamily H4J00_18975 PF01339 CheB methylesterase H4J00_18975 PF00072 Response regulator receiver domain H4J00_18980 PF18075 FtsX extracellular domain H4J00_18985 PF00005 ABC transporter H4J00_18990 PF00270 DEAD/DEAH box helicase H4J00_18990 PF00271 Helicase conserved C-terminal domain H4J00_18990 PF12300 ATP-dependent RNA helicase RhlB H4J00_18995 PF00085 Thioredoxin H4J00_19000 PF07498 Rho termination factor, N-terminal domain H4J00_19000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H4J00_19000 PF07497 Rho termination factor, RNA-binding domain H4J00_19020 PF03971 Monomeric isocitrate dehydrogenase H4J00_19035 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H4J00_19035 PF14489 QueF-like protein H4J00_19045 PF07687 Peptidase dimerisation domain H4J00_19045 PF01546 Peptidase family M20/M25/M40 H4J00_19050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H4J00_19055 PF00873 AcrB/AcrD/AcrF family H4J00_19060 PF00873 AcrB/AcrD/AcrF family H4J00_19085 PF07063 Domain of unknown function (DUF1338) H4J00_19125 PF01427 D-ala-D-ala dipeptidase H4J00_19130 PF01510 N-acetylmuramoyl-L-alanine amidase H4J00_19140 PF13378 Enolase C-terminal domain-like H4J00_19140 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H4J00_19155 PF13520 Amino acid permease H4J00_19175 PF05360 yiaA/B two helix domain H4J00_19185 PF07995 Glucose / Sorbosone dehydrogenase H4J00_19200 PF01915 Glycosyl hydrolase family 3 C-terminal domain H4J00_19200 PF00933 Glycosyl hydrolase family 3 N terminal domain H4J00_19200 PF14310 Fibronectin type III-like domain H4J00_19205 PF02152 Dihydroneopterin aldolase H4J00_19210 PF00814 Glycoprotease family H4J00_19215 PF01165 Ribosomal protein S21 H4J00_19220 PF09424 Yqey-like protein H4J00_19235 PF03631 Virulence factor BrkB H4J00_19240 PF10410 DnaB-helicase binding domain of primase H4J00_19240 PF08278 DNA primase DnaG DnaB-binding H4J00_19240 PF08275 DNA primase catalytic core, N-terminal domain H4J00_19240 PF01807 CHC2 zinc finger H4J00_19250 PF13593 SBF-like CPA transporter family (DUF4137) H4J00_19265 PF01040 UbiA prenyltransferase family H4J00_19290 PF00510 Cytochrome c oxidase subunit III H4J00_19295 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 H4J00_19305 PF00115 Cytochrome C and Quinol oxidase polypeptide I H4J00_19310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H4J00_19310 PF02790 Cytochrome C oxidase subunit II, transmembrane domain H4J00_19320 PF00171 Aldehyde dehydrogenase family H4J00_19320 PF01619 Proline dehydrogenase H4J00_19320 PF14850 DNA-binding domain of Proline dehydrogenase H4J00_19320 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H4J00_19360 PF00579 tRNA synthetases class I (W and Y) H4J00_19365 PF04225 Opacity-associated protein A LysM-like domain H4J00_19365 PF01551 Peptidase family M23 H4J00_19370 PF03702 Anhydro-N-acetylmuramic acid kinase H4J00_19380 PF07690 Major Facilitator Superfamily H4J00_19385 PF03372 Endonuclease/Exonuclease/phosphatase family H4J00_19415 PF07504 Fungalysin/Thermolysin Propeptide Motif H4J00_19415 PF01447 Thermolysin metallopeptidase, catalytic domain H4J00_19415 PF02868 Thermolysin metallopeptidase, alpha-helical domain H4J00_19415 PF01483 Proprotein convertase P-domain H4J00_19425 PF00361 Proton-conducting membrane transporter H4J00_19425 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus H4J00_19425 PF13244 Domain of unknown function (DUF4040) H4J00_19425 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter H4J00_19430 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L H4J00_19435 PF00361 Proton-conducting membrane transporter H4J00_19445 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) H4J00_19450 PF03334 Na+/H+ antiporter subunit H4J00_19460 PF04209 homogentisate 1,2-dioxygenase H4J00_19470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H4J00_19475 PF01047 MarR family H4J00_19485 PF00854 POT family H4J00_19490 PF03301 Tryptophan 2,3-dioxygenase H4J00_19500 PF00676 Dehydrogenase E1 component H4J00_19505 PF02779 Transketolase, pyrimidine binding domain H4J00_19505 PF02780 Transketolase, C-terminal domain H4J00_19515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H4J00_19515 PF00364 Biotin-requiring enzyme H4J00_19515 PF02817 e3 binding domain H4J00_19530 PF05598 Transposase domain (DUF772) H4J00_19530 PF01609 Transposase DDE domain H4J00_19535 PF00270 DEAD/DEAH box helicase H4J00_19535 PF00271 Helicase conserved C-terminal domain H4J00_19545 PF06903 VirK protein H4J00_19580 PF03377 TAL effector repeat H4J00_19585 PF13276 HTH-like domain H4J00_19585 PF13683 Integrase core domain H4J00_19605 PF00268 Ribonucleotide reductase, small chain H4J00_19610 PF03477 ATP cone domain H4J00_19610 PF02867 Ribonucleotide reductase, barrel domain H4J00_19610 PF00317 Ribonucleotide reductase, all-alpha domain H4J00_19620 PF13380 CoA binding domain H4J00_19620 PF13607 Succinyl-CoA ligase like flavodoxin domain H4J00_19620 PF00583 Acetyltransferase (GNAT) family H4J00_19630 PF00571 CBS domain H4J00_19630 PF01769 Divalent cation transporter H4J00_19630 PF03448 MgtE intracellular N domain H4J00_19635 PF00999 Sodium/hydrogen exchanger family H4J00_19635 PF02254 TrkA-N domain H4J00_19650 PF01609 Transposase DDE domain H4J00_19650 PF05598 Transposase domain (DUF772) H4J00_19665 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H4J00_19665 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H4J00_19670 PF00723 Glycosyl hydrolases family 15 H4J00_19685 PF05166 YcgL domain H4J00_19690 PF00109 Beta-ketoacyl synthase, N-terminal domain H4J00_19690 PF02801 Beta-ketoacyl synthase, C-terminal domain H4J00_19700 PF00535 Glycosyl transferase family 2 H4J00_19760 PF07977 FabA-like domain H4J00_19765 PF01553 Acyltransferase H4J00_19775 PF00550 Phosphopantetheine attachment site H4J00_19780 PF04820 Tryptophan halogenase H4J00_19820 PF01218 Coproporphyrinogen III oxidase H4J00_19830 PF01612 3'-5' exonuclease H4J00_19830 PF01367 5'-3' exonuclease, C-terminal SAM fold H4J00_19830 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H4J00_19830 PF00476 DNA polymerase family A H4J00_19880 PF12464 Maltose acetyltransferase H4J00_19880 PF14602 Hexapeptide repeat of succinyl-transferase H4J00_19890 PF13361 UvrD-like helicase C-terminal domain H4J00_19890 PF00580 UvrD/REP helicase N-terminal domain H4J00_19905 PF13396 Phospholipase_D-nuclease N-terminal H4J00_19905 PF13091 PLD-like domain H4J00_19910 PF03466 LysR substrate binding domain H4J00_19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H4J00_19915 PF03737 Aldolase/RraA H4J00_19920 PF04303 PrpF protein H4J00_19925 PF04909 Amidohydrolase H4J00_19930 PF00471 Ribosomal protein L33 H4J00_19935 PF00830 Ribosomal L28 family H4J00_19950 PF02527 rRNA small subunit methyltransferase G H4J00_19955 PF09423 PhoD-like phosphatase H4J00_19955 PF16655 PhoD-like phosphatase, N-terminal domain H4J00_19960 PF09423 PhoD-like phosphatase H4J00_19960 PF16655 PhoD-like phosphatase, N-terminal domain H4J00_19965 PF01648 4'-phosphopantetheinyl transferase superfamily H4J00_19970 PF04226 Transglycosylase associated protein H4J00_19980 PF03372 Endonuclease/Exonuclease/phosphatase family H4J00_19995 PF00474 Sodium:solute symporter family H4J00_20000 PF04341 Protein of unknown function, DUF485 H4J00_20010 PF16177 Acetyl-coenzyme A synthetase N-terminus H4J00_20010 PF00501 AMP-binding enzyme H4J00_20010 PF13193 AMP-binding enzyme C-terminal domain H4J00_20015 PF00196 Bacterial regulatory proteins, luxR family H4J00_20015 PF00072 Response regulator receiver domain H4J00_20040 PF09339 IclR helix-turn-helix domain H4J00_20040 PF01614 Bacterial transcriptional regulator H4J00_20045 PF02659 Putative manganese efflux pump H4J00_20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_20050 PF00512 His Kinase A (phospho-acceptor) domain H4J00_20060 PF06165 Glycosyltransferase family 36 H4J00_20060 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain H4J00_20075 PF13570 PQQ-like domain H4J00_20075 PF13360 PQQ-like domain H4J00_20075 PF01011 PQQ enzyme repeat H4J00_20080 PF01609 Transposase DDE domain H4J00_20080 PF05598 Transposase domain (DUF772) H4J00_20095 PF01432 Peptidase family M3 H4J00_20115 PF00472 RF-1 domain H4J00_20125 PF00849 RNA pseudouridylate synthase H4J00_20140 PF03109 ABC1 family H4J00_20150 PF01820 D-ala D-ala ligase N-terminus H4J00_20150 PF07478 D-ala D-ala ligase C-terminus H4J00_20155 PF13936 Helix-turn-helix domain H4J00_20155 PF00665 Integrase core domain H4J00_20165 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family H4J00_20170 PF00501 AMP-binding enzyme H4J00_20175 PF03692 Putative zinc- or iron-chelating domain H4J00_20180 PF00561 alpha/beta hydrolase fold H4J00_20185 PF02661 Fic/DOC family H4J00_20185 PF13784 Fic/DOC family N-terminal H4J00_20190 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H4J00_20190 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H4J00_20205 PF00588 SpoU rRNA Methylase family H4J00_20210 PF07690 Major Facilitator Superfamily H4J00_20225 PF02954 Bacterial regulatory protein, Fis family H4J00_20225 PF00072 Response regulator receiver domain H4J00_20225 PF00158 Sigma-54 interaction domain H4J00_20230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_20230 PF00512 His Kinase A (phospho-acceptor) domain H4J00_20235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H4J00_20235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H4J00_20235 PF00205 Thiamine pyrophosphate enzyme, central domain H4J00_20245 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H4J00_20245 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H4J00_20250 PF02556 Preprotein translocase subunit SecB H4J00_20255 PF00581 Rhodanese-like domain H4J00_20300 PF05598 Transposase domain (DUF772) H4J00_20300 PF01609 Transposase DDE domain H4J00_20310 PF02803 Thiolase, C-terminal domain H4J00_20310 PF00108 Thiolase, N-terminal domain H4J00_20335 PF05598 Transposase domain (DUF772) H4J00_20335 PF01609 Transposase DDE domain H4J00_20340 PF05598 Transposase domain (DUF772) H4J00_20340 PF01609 Transposase DDE domain H4J00_20370 PF00080 Copper/zinc superoxide dismutase (SODC) H4J00_20375 PF00080 Copper/zinc superoxide dismutase (SODC) H4J00_20380 PF00158 Sigma-54 interaction domain H4J00_20380 PF00072 Response regulator receiver domain H4J00_20380 PF02954 Bacterial regulatory protein, Fis family H4J00_20385 PF00512 His Kinase A (phospho-acceptor) domain H4J00_20385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H4J00_20385 PF00989 PAS fold H4J00_20390 PF00909 Ammonium Transporter Family H4J00_20395 PF00543 Nitrogen regulatory protein P-II H4J00_20400 PF00120 Glutamine synthetase, catalytic domain H4J00_20400 PF03951 Glutamine synthetase, beta-Grasp domain H4J00_20405 PF02673 Bacitracin resistance protein BacA H4J00_20445 PF03061 Thioesterase superfamily H4J00_20450 PF13091 PLD-like domain H4J00_20465 PF01883 Iron-sulfur cluster assembly protein H4J00_20465 PF10609 NUBPL iron-transfer P-loop NTPase H4J00_20485 PF01381 Helix-turn-helix H4J00_20490 PF13657 HipA N-terminal domain H4J00_20490 PF07804 HipA-like C-terminal domain H4J00_20495 PF10017 Histidine-specific methyltransferase, SAM-dependent H4J00_20500 PF03781 Sulfatase-modifying factor enzyme 1 H4J00_20500 PF12867 DinB superfamily H4J00_20510 PF00528 Binding-protein-dependent transport system inner membrane component H4J00_20515 PF00571 CBS domain H4J00_20515 PF00005 ABC transporter H4J00_20530 PF00005 ABC transporter H4J00_20540 PF07687 Peptidase dimerisation domain H4J00_20540 PF01546 Peptidase family M20/M25/M40 H4J00_20545 PF01734 Patatin-like phospholipase H4J00_20555 PF01037 Lrp/AsnC ligand binding domain H4J00_20560 PF00351 Biopterin-dependent aromatic amino acid hydroxylase H4J00_20580 PF00356 Bacterial regulatory proteins, lacI family H4J00_20600 PF00128 Alpha amylase, catalytic domain H4J00_20600 PF02806 Alpha amylase, C-terminal all-beta domain H4J00_20600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H4J00_20605 PF00128 Alpha amylase, catalytic domain H4J00_20605 PF16657 Maltogenic Amylase, C-terminal domain H4J00_20610 PF00128 Alpha amylase, catalytic domain H4J00_20610 PF11896 Domain of unknown function (DUF3416) H4J00_20620 PF17287 POTRA domain H4J00_20620 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB H4J00_20620 PF08479 POTRA domain, ShlB-type H4J00_20625 PF13018 Extended Signal Peptide of Type V secretion system H4J00_20625 PF13332 Hemagglutinin repeat H4J00_20625 PF05860 haemagglutination activity domain H4J00_20625 PF04829 Pre-toxin domain with VENN motif H4J00_20630 PF08845 Toxin SymE, type I toxin-antitoxin system H4J00_20635 PF04829 Pre-toxin domain with VENN motif H4J00_20635 PF05860 haemagglutination activity domain H4J00_20635 PF13332 Hemagglutinin repeat H4J00_20680 PF03594 Benzoate membrane transport protein H4J00_20685 PF01590 GAF domain H4J00_20685 PF08446 PAS fold H4J00_20685 PF13426 PAS domain H4J00_20685 PF00360 Phytochrome region H4J00_20690 PF01126 Heme oxygenase H4J00_20695 PF07690 Major Facilitator Superfamily H4J00_20700 PF01263 Aldose 1-epimerase H4J00_20715 PF02810 SEC-C motif H4J00_20755 PF01227 GTP cyclohydrolase I H4J00_20785 PF00083 Sugar (and other) transporter H4J00_20795 PF13396 Phospholipase_D-nuclease N-terminal H4J00_20795 PF13091 PLD-like domain H4J00_20845 PF05532 CsbD-like H4J00_20865 PF02868 Thermolysin metallopeptidase, alpha-helical domain H4J00_20865 PF01447 Thermolysin metallopeptidase, catalytic domain H4J00_20865 PF16485 Protealysin propeptide H4J00_20875 PF13344 Haloacid dehalogenase-like hydrolase H4J00_20875 PF00293 NUDIX domain H4J00_20905 PF00083 Sugar (and other) transporter H4J00_20905 PF08946 Osmosensory transporter coiled coil H4J00_20935 PF00294 pfkB family carbohydrate kinase H4J00_20940 PF12241 Trans-2-enoyl-CoA reductase catalytic region H4J00_20940 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H4J00_20940 PF07055 Enoyl reductase FAD binding domain H4J00_20955 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family H4J00_20960 PF01070 FMN-dependent dehydrogenase H4J00_20965 PF05598 Transposase domain (DUF772) H4J00_20965 PF01609 Transposase DDE domain H4J00_20975 PF07715 TonB-dependent Receptor Plug Domain H4J00_20975 PF00593 TonB dependent receptor H4J00_20980 PF00155 Aminotransferase class I and II H4J00_20985 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H4J00_21010 PF03006 Haemolysin-III related H4J00_21015 PF00270 DEAD/DEAH box helicase H4J00_21015 PF09369 Domain of unknown function (DUF1998) H4J00_21015 PF00271 Helicase conserved C-terminal domain H4J00_21075 PF00310 Glutamine amidotransferases class-II H4J00_21075 PF01493 GXGXG motif H4J00_21075 PF01645 Conserved region in glutamate synthase H4J00_21075 PF04898 Glutamate synthase central domain H4J00_21080 PF07992 Pyridine nucleotide-disulphide oxidoreductase H4J00_21080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H4J00_21090 PF13520 Amino acid permease H4J00_21100 PF02646 RmuC family H4J00_21110 PF00255 Glutathione peroxidase H4J00_21115 PF04333 MlaA lipoprotein H4J00_21125 PF05494 MlaC protein H4J00_21130 PF02470 MlaD protein H4J00_21135 PF02405 Permease MlaE H4J00_21140 PF00005 ABC transporter H4J00_21175 PF17946 RecC C-terminal domain H4J00_21180 PF12705 PD-(D/E)XK nuclease superfamily H4J00_21180 PF13361 UvrD-like helicase C-terminal domain H4J00_21180 PF00580 UvrD/REP helicase N-terminal domain H4J00_21185 PF13538 UvrD-like helicase C-terminal domain H4J00_21195 PF01381 Helix-turn-helix H4J00_21240 PF00665 Integrase core domain H4J00_21240 PF13936 Helix-turn-helix domain H4J00_21260 PF01609 Transposase DDE domain H4J00_21260 PF05598 Transposase domain (DUF772) H4J00_21265 PF00067 Cytochrome P450 H4J00_21270 PF00067 Cytochrome P450 H4J00_21275 PF00067 Cytochrome P450 H4J00_21290 PF00067 Cytochrome P450 H4J00_21295 PF00348 Polyprenyl synthetase H4J00_21310 PF01070 FMN-dependent dehydrogenase H4J00_21325 PF00849 RNA pseudouridylate synthase H4J00_21350 PF00990 Diguanylate cyclase, GGDEF domain H4J00_21360 PF02595 Glycerate kinase family H4J00_21365 PF07690 Major Facilitator Superfamily H4J00_21385 PF17785 PUA-like domain H4J00_21385 PF10672 S-adenosylmethionine-dependent methyltransferase H4J00_21390 PF03741 Integral membrane protein TerC family H4J00_21395 PF01694 Rhomboid family H4J00_21400 PF03009 Glycerophosphoryl diester phosphodiesterase family H4J00_21410 PF01569 PAP2 superfamily H4J00_21415 PF01926 50S ribosome-binding GTPase H4J00_21415 PF12631 MnmE helical domain H4J00_21415 PF10396 GTP-binding protein TrmE N-terminus H4J00_21420 PF01522 Polysaccharide deacetylase H4J00_21425 PF02096 60Kd inner membrane protein H4J00_21425 PF14849 YidC periplasmic domain H4J00_21430 PF00825 Ribonuclease P H4J00_21435 PF00468 Ribosomal protein L34