locus-tag class description ACU12_00005 PF00308 Bacterial dnaA protein ACU12_00005 PF08299 Bacterial dnaA protein helix-turn-helix ACU12_00005 PF11638 DnaA N-terminal domain ACU12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ACU12_00010 PF02767 DNA polymerase III beta subunit, central domain ACU12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ACU12_00015 PF02463 RecF/RecN/SMC N terminal domain ACU12_00020 PF00204 DNA gyrase B ACU12_00020 PF01751 Toprim domain ACU12_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_00020 PF00986 DNA gyrase B subunit, carboxyl terminus ACU12_00020 PF18053 DNA gyrase B subunit insert domain ACU12_00030 PF01435 Peptidase family M48 ACU12_00040 PF03544 Gram-negative bacterial TonB protein C-terminal ACU12_00045 PF01618 MotA/TolQ/ExbB proton channel family ACU12_00050 PF02472 Biopolymer transport protein ExbD/TolR ACU12_00055 PF02472 Biopolymer transport protein ExbD/TolR ACU12_00060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACU12_00070 PF13396 Phospholipase_D-nuclease N-terminal ACU12_00070 PF13091 PLD-like domain ACU12_00075 PF01609 Transposase DDE domain ACU12_00075 PF05598 Transposase domain (DUF772) ACU12_00090 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_00090 PF00107 Zinc-binding dehydrogenase ACU12_00095 PF00150 Cellulase (glycosyl hydrolase family 5) ACU12_00100 PF00150 Cellulase (glycosyl hydrolase family 5) ACU12_00105 PF00150 Cellulase (glycosyl hydrolase family 5) ACU12_00115 PF04389 Peptidase family M28 ACU12_00125 PF01551 Peptidase family M23 ACU12_00130 PF03572 Peptidase family S41 ACU12_00130 PF13180 PDZ domain ACU12_00135 PF01842 ACT domain ACU12_00135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACU12_00135 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACU12_00150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ACU12_00160 PF04055 Radical SAM superfamily ACU12_00165 PF05598 Transposase domain (DUF772) ACU12_00175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACU12_00175 PF06827 Zinc finger found in FPG and IleRS ACU12_00175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACU12_00200 PF04349 Periplasmic glucan biosynthesis protein, MdoG ACU12_00210 PF00265 Thymidine kinase ACU12_00215 PF13361 UvrD-like helicase C-terminal domain ACU12_00215 PF00580 UvrD/REP helicase N-terminal domain ACU12_00235 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ACU12_00240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACU12_00245 PF04820 Tryptophan halogenase ACU12_00260 PF00356 Bacterial regulatory proteins, lacI family ACU12_00270 PF01553 Acyltransferase ACU12_00275 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_00275 PF16197 Ketoacyl-synthetase C-terminal extension ACU12_00275 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_00275 PF00698 Acyl transferase domain ACU12_00275 PF08659 KR domain ACU12_00275 PF00550 Phosphopantetheine attachment site ACU12_00275 PF14765 Polyketide synthase dehydratase ACU12_00275 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_00300 PF01546 Peptidase family M20/M25/M40 ACU12_00300 PF07687 Peptidase dimerisation domain ACU12_00305 PF00266 Aminotransferase class-V ACU12_00330 PF00576 HIUase/Transthyretin family ACU12_00335 PF07308 Protein of unknown function (DUF1456) ACU12_00345 PF04408 Helicase associated domain (HA2) ACU12_00345 PF00270 DEAD/DEAH box helicase ACU12_00345 PF08482 ATP-dependent helicase C-terminal ACU12_00345 PF00271 Helicase conserved C-terminal domain ACU12_00355 PF00849 RNA pseudouridylate synthase ACU12_00365 PF00248 Aldo/keto reductase family ACU12_00370 PF00107 Zinc-binding dehydrogenase ACU12_00370 PF16884 N-terminal domain of oxidoreductase ACU12_00375 PF00248 Aldo/keto reductase family ACU12_00390 PF13340 Putative transposase of IS4/5 family (DUF4096) ACU12_00410 PF02566 OsmC-like protein ACU12_00415 PF01047 MarR family ACU12_00420 PF03969 AFG1-like ATPase ACU12_00440 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACU12_00440 PF07683 Cobalamin synthesis protein cobW C-terminal domain ACU12_00485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_00485 PF02770 Acyl-CoA dehydrogenase, middle domain ACU12_00485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_00490 PF01039 Carboxyl transferase domain ACU12_00495 PF02785 Biotin carboxylase C-terminal domain ACU12_00495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACU12_00495 PF00289 Biotin carboxylase, N-terminal domain ACU12_00495 PF00364 Biotin-requiring enzyme ACU12_00500 PF00326 Prolyl oligopeptidase family ACU12_00515 PF05598 Transposase domain (DUF772) ACU12_00525 PF02614 Glucuronate isomerase ACU12_00530 PF03422 Carbohydrate binding module (family 6) ACU12_00530 PF00331 Glycosyl hydrolase family 10 ACU12_00530 PF00553 Cellulose binding domain ACU12_00535 PF00553 Cellulose binding domain ACU12_00535 PF03422 Carbohydrate binding module (family 6) ACU12_00535 PF00331 Glycosyl hydrolase family 10 ACU12_00560 PF04616 Glycosyl hydrolases family 43 ACU12_00585 PF00665 Integrase core domain ACU12_00585 PF13936 Helix-turn-helix domain ACU12_00590 PF00920 Dehydratase family ACU12_00595 PF03692 Putative zinc- or iron-chelating domain ACU12_00600 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_00605 PF07690 Major Facilitator Superfamily ACU12_00610 PF01966 HD domain ACU12_00610 PF11871 Domain of unknown function (DUF3391) ACU12_00630 PF00171 Aldehyde dehydrogenase family ACU12_00640 PF01494 FAD binding domain ACU12_00665 PF00355 Rieske [2Fe-2S] domain ACU12_00670 PF01144 Coenzyme A transferase ACU12_00675 PF01144 Coenzyme A transferase ACU12_00680 PF02803 Thiolase, C-terminal domain ACU12_00680 PF00108 Thiolase, N-terminal domain ACU12_00685 PF00775 Dioxygenase ACU12_00685 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ACU12_00695 PF00206 Lyase ACU12_00695 PF10397 Adenylosuccinate lyase C-terminus ACU12_00700 PF12146 Serine aminopeptidase, S33 ACU12_00705 PF02627 Carboxymuconolactone decarboxylase family ACU12_00715 PF01614 Bacterial transcriptional regulator ACU12_00715 PF09339 IclR helix-turn-helix domain ACU12_00725 PF07859 alpha/beta hydrolase fold ACU12_00740 PF05598 Transposase domain (DUF772) ACU12_00755 PF03377 TAL effector repeat ACU12_00765 PF05598 Transposase domain (DUF772) ACU12_00785 PF01134 Glucose inhibited division protein A ACU12_00785 PF13932 GidA associated domain ACU12_00795 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_00815 PF13649 Methyltransferase domain ACU12_00825 PF12697 Alpha/beta hydrolase family ACU12_00835 PF00155 Aminotransferase class I and II ACU12_00840 PF04055 Radical SAM superfamily ACU12_00840 PF06968 Biotin and Thiamin Synthesis associated domain ACU12_00845 PF00156 Phosphoribosyl transferase domain ACU12_00850 PF01040 UbiA prenyltransferase family ACU12_00865 PF05598 Transposase domain (DUF772) ACU12_00875 PF04357 TamB, inner membrane protein subunit of TAM complex ACU12_00880 PF01103 Surface antigen ACU12_00880 PF17243 POTRA domain TamA domain 1 ACU12_00890 PF05598 Transposase domain (DUF772) ACU12_00895 PF13181 Tetratricopeptide repeat ACU12_00900 PF05746 DALR anticodon binding domain ACU12_00900 PF02092 Glycyl-tRNA synthetase beta subunit ACU12_00905 PF02091 Glycyl-tRNA synthetase alpha subunit ACU12_00910 PF00437 Type II/IV secretion system protein ACU12_00910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACU12_00920 PF00958 GMP synthase C terminal domain ACU12_00920 PF00117 Glutamine amidotransferase class-I ACU12_00930 PF00902 Sec-independent protein translocase protein (TatC) ACU12_00935 PF02416 mttA/Hcf106 family ACU12_00940 PF02416 mttA/Hcf106 family ACU12_00950 PF00762 Ferrochelatase ACU12_00955 PF12697 Alpha/beta hydrolase family ACU12_00970 PF04381 Putative exonuclease, RdgC ACU12_00975 PF01171 PP-loop family ACU12_00985 PF00356 Bacterial regulatory proteins, lacI family ACU12_00990 PF07477 Glycosyl hydrolase family 67 C-terminus ACU12_00990 PF07488 Glycosyl hydrolase family 67 middle domain ACU12_00990 PF03648 Glycosyl hydrolase family 67 N-terminus ACU12_01000 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACU12_01000 PF13378 Enolase C-terminal domain-like ACU12_01005 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ACU12_01005 PF04616 Glycosyl hydrolases family 43 ACU12_01010 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_01010 PF14310 Fibronectin type III-like domain ACU12_01010 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACU12_01010 PF07691 PA14 domain ACU12_01015 PF08125 Mannitol dehydrogenase C-terminal domain ACU12_01015 PF01232 Mannitol dehydrogenase Rossmann domain ACU12_01025 PF05598 Transposase domain (DUF772) ACU12_01090 PF01313 Bacterial export proteins, family 3 ACU12_01095 PF00813 FliP family ACU12_01110 PF00771 FHIPEP family ACU12_01115 PF01312 FlhB HrpN YscU SpaS Family ACU12_01130 PF01514 Secretory protein of YscJ/FliF family ACU12_01145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACU12_01145 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACU12_01145 PF18269 T3SS EscN ATPase C-terminal domain ACU12_01155 PF01311 Bacterial export proteins, family 1 ACU12_01170 PF01464 Transglycosylase SLT domain ACU12_01185 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACU12_01185 PF12795 Mechanosensitive ion channel porin domain ACU12_01185 PF00924 Mechanosensitive ion channel ACU12_01200 PF03109 ABC1 family ACU12_01205 PF05661 Protein of unknown function (DUF808) ACU12_01215 PF00072 Response regulator receiver domain ACU12_01215 PF00990 Diguanylate cyclase, GGDEF domain ACU12_01220 PF00534 Glycosyl transferases group 1 ACU12_01220 PF08323 Starch synthase catalytic domain ACU12_01225 PF00128 Alpha amylase, catalytic domain ACU12_01225 PF02806 Alpha amylase, C-terminal all-beta domain ACU12_01225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACU12_01230 PF11941 Domain of unknown function (DUF3459) ACU12_01230 PF00128 Alpha amylase, catalytic domain ACU12_01230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACU12_01235 PF02446 4-alpha-glucanotransferase ACU12_01240 PF00128 Alpha amylase, catalytic domain ACU12_01250 PF00128 Alpha amylase, catalytic domain ACU12_01250 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACU12_01255 PF13460 NAD(P)H-binding ACU12_01265 PF13936 Helix-turn-helix domain ACU12_01265 PF00665 Integrase core domain ACU12_01275 PF05598 Transposase domain (DUF772) ACU12_01275 PF01609 Transposase DDE domain ACU12_01300 PF13276 HTH-like domain ACU12_01300 PF13333 Integrase core domain ACU12_01300 PF00665 Integrase core domain ACU12_01310 PF03377 TAL effector repeat ACU12_01315 PF13276 HTH-like domain ACU12_01315 PF13333 Integrase core domain ACU12_01315 PF00665 Integrase core domain ACU12_01330 PF03377 TAL effector repeat ACU12_01360 PF13683 Integrase core domain ACU12_01360 PF13276 HTH-like domain ACU12_01365 PF01527 Transposase ACU12_01370 PF03377 TAL effector repeat ACU12_01405 PF01026 TatD related DNase ACU12_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_01415 PF03466 LysR substrate binding domain ACU12_01420 PF07690 Major Facilitator Superfamily ACU12_01430 PF02146 Sir2 family ACU12_01440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACU12_01440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACU12_01450 PF00551 Formyl transferase ACU12_01455 PF00486 Transcriptional regulatory protein, C terminal ACU12_01455 PF00072 Response regulator receiver domain ACU12_01460 PF00512 His Kinase A (phospho-acceptor) domain ACU12_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_01460 PF00672 HAMP domain ACU12_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_01465 PF00512 His Kinase A (phospho-acceptor) domain ACU12_01465 PF00672 HAMP domain ACU12_01475 PF02677 Epoxyqueuosine reductase QueH ACU12_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_01480 PF03466 LysR substrate binding domain ACU12_01485 PF03358 NADPH-dependent FMN reductase ACU12_01495 PF08267 Cobalamin-independent synthase, N-terminal domain ACU12_01495 PF01717 Cobalamin-independent synthase, Catalytic domain ACU12_01505 PF01638 HxlR-like helix-turn-helix ACU12_01510 PF05368 NmrA-like family ACU12_01535 PF00490 Delta-aminolevulinic acid dehydratase ACU12_01555 PF00258 Flavodoxin ACU12_01555 PF00175 Oxidoreductase NAD-binding domain ACU12_01555 PF00667 FAD binding domain ACU12_01565 PF08501 Shikimate dehydrogenase substrate binding domain ACU12_01565 PF01488 Shikimate / quinate 5-dehydrogenase ACU12_01565 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ACU12_01580 PF13307 Helicase C-terminal domain ACU12_01580 PF06733 DEAD_2 ACU12_01600 PF06628 Catalase-related immune-responsive ACU12_01600 PF00199 Catalase ACU12_01620 PF01207 Dihydrouridine synthase (Dus) ACU12_01630 PF00486 Transcriptional regulatory protein, C terminal ACU12_01630 PF00072 Response regulator receiver domain ACU12_01635 PF00672 HAMP domain ACU12_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_01635 PF00512 His Kinase A (phospho-acceptor) domain ACU12_01650 PF06167 Glucose-regulated metallo-peptidase M90 ACU12_01660 PF02237 Biotin protein ligase C terminal domain ACU12_01660 PF03099 Biotin/lipoate A/B protein ligase family ACU12_01660 PF08279 HTH domain ACU12_01665 PF03309 Type III pantothenate kinase ACU12_01680 PF02223 Thymidylate kinase ACU12_01695 PF00491 Arginase family ACU12_01710 PF05532 CsbD-like ACU12_01715 PF00579 tRNA synthetases class I (W and Y) ACU12_01720 PF00753 Metallo-beta-lactamase superfamily ACU12_01740 PF00892 EamA-like transporter family ACU12_01760 PF00199 Catalase ACU12_01775 PF00883 Cytosol aminopeptidase family, catalytic domain ACU12_01775 PF02789 Cytosol aminopeptidase family, N-terminal domain ACU12_01785 PF01594 AI-2E family transporter ACU12_01805 PF00595 PDZ domain ACU12_01815 PF00512 His Kinase A (phospho-acceptor) domain ACU12_01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_01815 PF08521 Two-component sensor kinase N-terminal ACU12_01820 PF08338 Domain of unknown function (DUF1731) ACU12_01820 PF01370 NAD dependent epimerase/dehydratase family ACU12_01850 PF00440 Bacterial regulatory proteins, tetR family ACU12_01855 PF00111 2Fe-2S iron-sulfur cluster binding domain ACU12_01855 PF00175 Oxidoreductase NAD-binding domain ACU12_01855 PF00970 Oxidoreductase FAD-binding domain ACU12_01860 PF00487 Fatty acid desaturase ACU12_01865 PF12792 CSS motif domain associated with EAL ACU12_01865 PF00563 EAL domain ACU12_01875 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACU12_01875 PF01078 Magnesium chelatase, subunit ChlI ACU12_01880 PF04380 Membrane fusogenic activity ACU12_01885 PF00543 Nitrogen regulatory protein P-II ACU12_01905 PF05598 Transposase domain (DUF772) ACU12_01920 PF03377 TAL effector repeat ACU12_01925 PF03377 TAL effector repeat ACU12_01930 PF01527 Transposase ACU12_01935 PF13276 HTH-like domain ACU12_01935 PF13683 Integrase core domain ACU12_01955 PF17284 Spermidine synthase tetramerisation domain ACU12_01960 PF17944 Arginine decarboxylase C-terminal helical extension ACU12_01960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACU12_01960 PF17810 Arginine decarboxylase helical bundle domain ACU12_01965 PF05598 Transposase domain (DUF772) ACU12_01965 PF01609 Transposase DDE domain ACU12_01975 PF01757 Acyltransferase family ACU12_01980 PF00106 short chain dehydrogenase ACU12_01995 PF00750 tRNA synthetases class I (R) ACU12_01995 PF03485 Arginyl tRNA synthetase N terminal domain ACU12_01995 PF05746 DALR anticodon binding domain ACU12_02000 PF04002 RadC-like JAB domain ACU12_02005 PF02441 Flavoprotein ACU12_02005 PF04127 DNA / pantothenate metabolism flavoprotein ACU12_02010 PF00692 dUTPase ACU12_02015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACU12_02015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACU12_02015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACU12_02015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACU12_02030 PF00535 Glycosyl transferase family 2 ACU12_02035 PF01370 NAD dependent epimerase/dehydratase family ACU12_02045 PF02195 ParB-like nuclease domain ACU12_02045 PF17762 HTH domain found in ParB protein ACU12_02050 PF13614 AAA domain ACU12_02060 PF00156 Phosphoribosyl transferase domain ACU12_02070 PF01259 SAICAR synthetase ACU12_02075 PF05099 Tellurite resistance protein TerB ACU12_02075 PF00226 DnaJ domain ACU12_02080 PF00834 Ribulose-phosphate 3 epimerase family ACU12_02085 PF00583 Acetyltransferase (GNAT) family ACU12_02090 PF00781 Diacylglycerol kinase catalytic domain ACU12_02095 PF04715 Anthranilate synthase component I, N terminal region ACU12_02095 PF00425 chorismate binding enzyme ACU12_02110 PF00117 Glutamine amidotransferase class-I ACU12_02125 PF00591 Glycosyl transferase family, a/b domain ACU12_02125 PF02885 Glycosyl transferase family, helical bundle domain ACU12_02130 PF00218 Indole-3-glycerol phosphate synthase ACU12_02140 PF00027 Cyclic nucleotide-binding domain ACU12_02140 PF00325 Bacterial regulatory proteins, crp family ACU12_02145 PF02675 S-adenosylmethionine decarboxylase ACU12_02150 PF00893 Small Multidrug Resistance protein ACU12_02155 PF03232 Ubiquinone biosynthesis protein COQ7 ACU12_02160 PF00572 Ribosomal protein L13 ACU12_02165 PF00380 Ribosomal protein S9/S16 ACU12_02180 PF00293 NUDIX domain ACU12_02190 PF00210 Ferritin-like domain ACU12_02195 PF00072 Response regulator receiver domain ACU12_02195 PF00512 His Kinase A (phospho-acceptor) domain ACU12_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_02195 PF00672 HAMP domain ACU12_02195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACU12_02195 PF01627 Hpt domain ACU12_02200 PF00563 EAL domain ACU12_02200 PF00990 Diguanylate cyclase, GGDEF domain ACU12_02200 PF03707 Bacterial signalling protein N terminal repeat ACU12_02220 PF01521 Iron-sulphur cluster biosynthesis ACU12_02230 PF00293 NUDIX domain ACU12_02230 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ACU12_02230 PF09297 NADH pyrophosphatase zinc ribbon domain ACU12_02235 PF03186 CobD/Cbib protein ACU12_02235 PF17113 Regulatory signalling modulator protein AmpE ACU12_02250 PF07690 Major Facilitator Superfamily ACU12_02265 PF12805 FUSC-like inner membrane protein yccS ACU12_02275 PF12704 MacB-like periplasmic core domain ACU12_02275 PF02687 FtsX-like permease family ACU12_02275 PF00005 ABC transporter ACU12_02280 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACU12_02280 PF02844 Phosphoribosylglycinamide synthetase, N domain ACU12_02280 PF02843 Phosphoribosylglycinamide synthetase, C domain ACU12_02285 PF02142 MGS-like domain ACU12_02285 PF01808 AICARFT/IMPCHase bienzyme ACU12_02295 PF00818 Ice nucleation protein repeat ACU12_02300 PF02954 Bacterial regulatory protein, Fis family ACU12_02310 PF01381 Helix-turn-helix ACU12_02335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACU12_02335 PF00289 Biotin carboxylase, N-terminal domain ACU12_02335 PF02785 Biotin carboxylase C-terminal domain ACU12_02345 PF00364 Biotin-requiring enzyme ACU12_02350 PF01220 Dehydroquinase class II ACU12_02360 PF02683 Cytochrome C biogenesis protein transmembrane region ACU12_02360 PF11412 Disulphide bond corrector protein DsbC ACU12_02365 PF03091 CutA1 divalent ion tolerance protein ACU12_02370 PF17764 3′ DNA-binding domain (3′BD) ACU12_02370 PF00270 DEAD/DEAH box helicase ACU12_02370 PF18074 Primosomal protein N C-terminal domain ACU12_02370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACU12_02370 PF00271 Helicase conserved C-terminal domain ACU12_02390 PF01554 MatE ACU12_02395 PF01343 Peptidase family S49 ACU12_02420 PF01300 Telomere recombination ACU12_02425 PF13368 Topoisomerase C-terminal repeat ACU12_02425 PF01751 Toprim domain ACU12_02425 PF01131 DNA topoisomerase ACU12_02435 PF07963 Prokaryotic N-terminal methylation motif ACU12_02435 PF00114 Pilin (bacterial filament) ACU12_02440 PF04361 Protein of unknown function (DUF494) ACU12_02445 PF02481 DNA recombination-mediator protein A ACU12_02445 PF17782 DprA winged helix domain ACU12_02450 PF01476 LysM domain ACU12_02455 PF01327 Polypeptide deformylase ACU12_02460 PF02911 Formyl transferase, C-terminal domain ACU12_02460 PF00551 Formyl transferase ACU12_02465 PF01189 16S rRNA methyltransferase RsmB/F ACU12_02465 PF01029 NusB family ACU12_02480 PF00535 Glycosyl transferase family 2 ACU12_02500 PF00925 GTP cyclohydrolase II ACU12_02510 PF03279 Bacterial lipid A biosynthesis acyltransferase ACU12_02515 PF02580 D-Tyr-tRNA(Tyr) deacylase ACU12_02520 PF04539 Sigma-70 region 3 ACU12_02520 PF00140 Sigma-70 factor, region 1.2 ACU12_02520 PF04542 Sigma-70 region 2 ACU12_02520 PF04545 Sigma-70, region 4 ACU12_02520 PF03979 Sigma-70 factor, region 1.1 ACU12_02520 PF04546 Sigma-70, non-essential region ACU12_02545 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ACU12_02545 PF00326 Prolyl oligopeptidase family ACU12_02550 PF02798 Glutathione S-transferase, N-terminal domain ACU12_02550 PF00043 Glutathione S-transferase, C-terminal domain ACU12_02585 PF00005 ABC transporter ACU12_02595 PF01381 Helix-turn-helix ACU12_02605 PF02583 Metal-sensitive transcriptional repressor ACU12_02610 PF01545 Cation efflux family ACU12_02615 PF00175 Oxidoreductase NAD-binding domain ACU12_02615 PF01383 CpcD/allophycocyanin linker domain ACU12_02620 PF00005 ABC transporter ACU12_02625 PF01061 ABC-2 type transporter ACU12_02635 PF02558 Ketopantoate reductase PanE/ApbA ACU12_02635 PF08546 Ketopantoate reductase PanE/ApbA C terminal ACU12_02660 PF01609 Transposase DDE domain ACU12_02660 PF05598 Transposase domain (DUF772) ACU12_02700 PF12704 MacB-like periplasmic core domain ACU12_02700 PF02687 FtsX-like permease family ACU12_02715 PF01527 Transposase ACU12_02720 PF13406 Transglycosylase SLT domain ACU12_02735 PF05598 Transposase domain (DUF772) ACU12_02750 PF01609 Transposase DDE domain ACU12_02750 PF05598 Transposase domain (DUF772) ACU12_02755 PF05598 Transposase domain (DUF772) ACU12_02765 PF03527 RHS protein ACU12_02765 PF05593 RHS Repeat ACU12_02775 PF13683 Integrase core domain ACU12_02775 PF13276 HTH-like domain ACU12_02780 PF05598 Transposase domain (DUF772) ACU12_02790 PF17287 POTRA domain ACU12_02790 PF08479 POTRA domain, ShlB-type ACU12_02790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACU12_02830 PF05598 Transposase domain (DUF772) ACU12_02855 PF05598 Transposase domain (DUF772) ACU12_02865 PF01527 Transposase ACU12_02870 PF13276 HTH-like domain ACU12_02870 PF13683 Integrase core domain ACU12_02880 PF00106 short chain dehydrogenase ACU12_02915 PF07759 Protein of unknown function (DUF1615) ACU12_02925 PF00892 EamA-like transporter family ACU12_02930 PF03330 Lytic transglycolase ACU12_02945 PF05598 Transposase domain (DUF772) ACU12_02955 PF00324 Amino acid permease ACU12_02965 PF01544 CorA-like Mg2+ transporter protein ACU12_02990 PF01204 Trehalase ACU12_03020 PF03707 Bacterial signalling protein N terminal repeat ACU12_03020 PF00990 Diguanylate cyclase, GGDEF domain ACU12_03020 PF00563 EAL domain ACU12_03035 PF00916 Sulfate permease family ACU12_03035 PF01740 STAS domain ACU12_03050 PF13632 Glycosyl transferase family group 2 ACU12_03060 PF07694 5TMR of 5TMR-LYT ACU12_03060 PF06580 Histidine kinase ACU12_03065 PF00072 Response regulator receiver domain ACU12_03065 PF04397 LytTr DNA-binding domain ACU12_03070 PF03900 Porphobilinogen deaminase, C-terminal domain ACU12_03070 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACU12_03095 PF00326 Prolyl oligopeptidase family ACU12_03095 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ACU12_03105 PF00155 Aminotransferase class I and II ACU12_03110 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ACU12_03110 PF00326 Prolyl oligopeptidase family ACU12_03115 PF04304 Protein of unknown function (DUF454) ACU12_03125 PF01678 Diaminopimelate epimerase ACU12_03135 PF02899 Phage integrase, N-terminal SAM-like domain ACU12_03135 PF00589 Phage integrase family ACU12_03140 PF00227 Proteasome subunit ACU12_03145 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_03145 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_03145 PF07724 AAA domain (Cdc48 subfamily) ACU12_03160 PF13673 Acetyltransferase (GNAT) domain ACU12_03165 PF13533 Biotin-lipoyl like ACU12_03175 PF01209 ubiE/COQ5 methyltransferase family ACU12_03180 PF03707 Bacterial signalling protein N terminal repeat ACU12_03180 PF00990 Diguanylate cyclase, GGDEF domain ACU12_03180 PF00563 EAL domain ACU12_03185 PF01433 Peptidase family M1 domain ACU12_03185 PF11838 ERAP1-like C-terminal domain ACU12_03200 PF00294 pfkB family carbohydrate kinase ACU12_03210 PF04085 rod shape-determining protein MreC ACU12_03220 PF03717 Penicillin-binding Protein dimerisation domain ACU12_03220 PF00905 Penicillin binding protein transpeptidase domain ACU12_03225 PF01098 Cell cycle protein ACU12_03235 PF16671 Actin cross-linking domain ACU12_03235 PF04717 Type VI secretion system, phage-baseplate injector ACU12_03245 PF13936 Helix-turn-helix domain ACU12_03245 PF00665 Integrase core domain ACU12_03250 PF05598 Transposase domain (DUF772) ACU12_03265 PF13406 Transglycosylase SLT domain ACU12_03270 PF03330 Lytic transglycolase ACU12_03270 PF05036 Sporulation related domain ACU12_03280 PF07943 Penicillin-binding protein 5, C-terminal domain ACU12_03280 PF00768 D-alanyl-D-alanine carboxypeptidase ACU12_03290 PF04359 Protein of unknown function (DUF493) ACU12_03295 PF03099 Biotin/lipoate A/B protein ligase family ACU12_03300 PF04055 Radical SAM superfamily ACU12_03300 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ACU12_03305 PF17804 Tail specific protease N-terminal domain ACU12_03305 PF03572 Peptidase family S41 ACU12_03305 PF00595 PDZ domain ACU12_03305 PF11818 C-terminal domain of tail specific protease (DUF3340) ACU12_03315 PF01467 Cytidylyltransferase-like ACU12_03315 PF00293 NUDIX domain ACU12_03355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACU12_03355 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACU12_03360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACU12_03360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACU12_03365 PF04972 BON domain ACU12_03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_03370 PF00360 Phytochrome region ACU12_03370 PF08446 PAS fold ACU12_03370 PF00512 His Kinase A (phospho-acceptor) domain ACU12_03370 PF01590 GAF domain ACU12_03375 PF00072 Response regulator receiver domain ACU12_03380 PF00512 His Kinase A (phospho-acceptor) domain ACU12_03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_03385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACU12_03415 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ACU12_03415 PF16355 Domain of unknown function (DUF4982) ACU12_03415 PF02837 Glycosyl hydrolases family 2, sugar binding domain ACU12_03415 PF00703 Glycosyl hydrolases family 2 ACU12_03415 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ACU12_03435 PF07690 Major Facilitator Superfamily ACU12_03440 PF00356 Bacterial regulatory proteins, lacI family ACU12_03445 PF01380 SIS domain ACU12_03450 PF01979 Amidohydrolase family ACU12_03460 PF00535 Glycosyl transferase family 2 ACU12_03465 PF14883 Hypothetical glycosyl hydrolase family 13 ACU12_03465 PF01522 Polysaccharide deacetylase ACU12_03475 PF13936 Helix-turn-helix domain ACU12_03475 PF00665 Integrase core domain ACU12_03480 PF12627 Probable RNA and SrmB- binding site of polymerase A ACU12_03480 PF01966 HD domain ACU12_03480 PF01743 Poly A polymerase head domain ACU12_03490 PF00171 Aldehyde dehydrogenase family ACU12_03515 PF00034 Cytochrome c ACU12_03520 PF01926 50S ribosome-binding GTPase ACU12_03530 PF04107 Glutamate-cysteine ligase family 2(GCS2) ACU12_03535 PF05598 Transposase domain (DUF772) ACU12_03560 PF05598 Transposase domain (DUF772) ACU12_03560 PF01609 Transposase DDE domain ACU12_03575 PF16527 Two-component sensor protein CpxA, periplasmic domain ACU12_03575 PF00672 HAMP domain ACU12_03575 PF00512 His Kinase A (phospho-acceptor) domain ACU12_03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_03580 PF00072 Response regulator receiver domain ACU12_03580 PF00486 Transcriptional regulatory protein, C terminal ACU12_03590 PF02583 Metal-sensitive transcriptional repressor ACU12_03595 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_03595 PF00107 Zinc-binding dehydrogenase ACU12_03605 PF00756 Putative esterase ACU12_03620 PF12848 ABC transporter ACU12_03620 PF00005 ABC transporter ACU12_03640 PF00464 Serine hydroxymethyltransferase ACU12_03650 PF03477 ATP cone domain ACU12_03660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACU12_03660 PF01872 RibD C-terminal domain ACU12_03665 PF01872 RibD C-terminal domain ACU12_03665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACU12_03675 PF00677 Lumazine binding domain ACU12_03680 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACU12_03680 PF00925 GTP cyclohydrolase II ACU12_03685 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACU12_03690 PF01029 NusB family ACU12_03695 PF02769 AIR synthase related protein, C-terminal domain ACU12_03695 PF00586 AIR synthase related protein, N-terminal domain ACU12_03715 PF03814 Potassium-transporting ATPase A subunit ACU12_03725 PF02669 K+-transporting ATPase, c chain ACU12_03730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_03730 PF02702 Osmosensitive K+ channel His kinase sensor domain ACU12_03730 PF00512 His Kinase A (phospho-acceptor) domain ACU12_03730 PF13492 GAF domain ACU12_03730 PF13493 Domain of unknown function (DUF4118) ACU12_03735 PF00486 Transcriptional regulatory protein, C terminal ACU12_03735 PF00072 Response regulator receiver domain ACU12_03740 PF02913 FAD linked oxidases, C-terminal domain ACU12_03740 PF01565 FAD binding domain ACU12_03745 PF04307 LexA-binding, inner membrane-associated putative hydrolase ACU12_03750 PF02021 Uncharacterised protein family UPF0102 ACU12_03760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACU12_03780 PF02381 MraZ protein, putative antitoxin-like ACU12_03785 PF01795 MraW methylase family ACU12_03790 PF04999 Cell division protein FtsL ACU12_03795 PF03717 Penicillin-binding Protein dimerisation domain ACU12_03795 PF00905 Penicillin binding protein transpeptidase domain ACU12_03800 PF02875 Mur ligase family, glutamate ligase domain ACU12_03800 PF08245 Mur ligase middle domain ACU12_03800 PF01225 Mur ligase family, catalytic domain ACU12_03805 PF01225 Mur ligase family, catalytic domain ACU12_03805 PF02875 Mur ligase family, glutamate ligase domain ACU12_03805 PF08245 Mur ligase middle domain ACU12_03810 PF00953 Glycosyl transferase family 4 ACU12_03815 PF01098 Cell cycle protein ACU12_03820 PF04101 Glycosyltransferase family 28 C-terminal domain ACU12_03820 PF03033 Glycosyltransferase family 28 N-terminal domain ACU12_03825 PF02875 Mur ligase family, glutamate ligase domain ACU12_03825 PF01225 Mur ligase family, catalytic domain ACU12_03825 PF08245 Mur ligase middle domain ACU12_03830 PF07478 D-ala D-ala ligase C-terminus ACU12_03830 PF01820 D-ala D-ala ligase N-terminus ACU12_03835 PF03799 Cell division protein FtsQ ACU12_03835 PF08478 POTRA domain, FtsQ-type ACU12_03840 PF02491 SHS2 domain inserted in FTSA ACU12_03845 PF00091 Tubulin/FtsZ family, GTPase domain ACU12_03845 PF12327 FtsZ family, C-terminal domain ACU12_03850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACU12_03860 PF01476 LysM domain ACU12_03860 PF01551 Peptidase family M23 ACU12_03865 PF07516 SecA Wing and Scaffold domain ACU12_03865 PF01043 SecA preprotein cross-linking domain ACU12_03865 PF07517 SecA DEAD-like domain ACU12_03865 PF02810 SEC-C motif ACU12_03875 PF00293 NUDIX domain ACU12_03885 PF02219 Methylenetetrahydrofolate reductase ACU12_03895 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_03895 PF14765 Polyketide synthase dehydratase ACU12_03895 PF00698 Acyl transferase domain ACU12_03895 PF00550 Phosphopantetheine attachment site ACU12_03895 PF00107 Zinc-binding dehydrogenase ACU12_03895 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_03895 PF16197 Ketoacyl-synthetase C-terminal extension ACU12_03895 PF08659 KR domain ACU12_03895 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_03900 PF00082 Subtilase family ACU12_03900 PF09286 Pro-kumamolisin, activation domain ACU12_03910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACU12_03945 PF13649 Methyltransferase domain ACU12_03950 PF05221 S-adenosyl-L-homocysteine hydrolase ACU12_03950 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACU12_03960 PF00311 Phosphoenolpyruvate carboxylase ACU12_03970 PF01389 OmpA-like transmembrane domain ACU12_03970 PF00691 OmpA family ACU12_03985 PF00328 Histidine phosphatase superfamily (branch 2) ACU12_03990 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACU12_03990 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACU12_03990 PF02772 S-adenosylmethionine synthetase, central domain ACU12_04005 PF01207 Dihydrouridine synthase (Dus) ACU12_04020 PF00294 pfkB family carbohydrate kinase ACU12_04025 PF07662 Na+ dependent nucleoside transporter C-terminus ACU12_04025 PF07670 Nucleoside recognition ACU12_04025 PF01773 Na+ dependent nucleoside transporter N-terminus ACU12_04040 PF00248 Aldo/keto reductase family ACU12_04075 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ACU12_04085 PF00005 ABC transporter ACU12_04090 PF13472 GDSL-like Lipase/Acylhydrolase family ACU12_04095 PF00072 Response regulator receiver domain ACU12_04095 PF00486 Transcriptional regulatory protein, C terminal ACU12_04100 PF00512 His Kinase A (phospho-acceptor) domain ACU12_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_04100 PF08521 Two-component sensor kinase N-terminal ACU12_04110 PF01219 Prokaryotic diacylglycerol kinase ACU12_04130 PF01790 Prolipoprotein diacylglyceryl transferase ACU12_04135 PF00303 Thymidylate synthase ACU12_04145 PF00186 Dihydrofolate reductase ACU12_04150 PF00149 Calcineurin-like phosphoesterase ACU12_04155 PF04379 ApaG domain ACU12_04160 PF00398 Ribosomal RNA adenine dimethylase ACU12_04165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACU12_04170 PF00639 PPIC-type PPIASE domain ACU12_04170 PF09312 SurA N-terminal domain ACU12_04175 PF03968 OstA-like protein ACU12_04175 PF04453 LPS transport system D ACU12_04180 PF00850 Histone deacetylase domain ACU12_04185 PF01923 Cobalamin adenosyltransferase ACU12_04195 PF01494 FAD binding domain ACU12_04200 PF01494 FAD binding domain ACU12_04225 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACU12_04230 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit ACU12_04230 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACU12_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_04235 PF03466 LysR substrate binding domain ACU12_04240 PF00501 AMP-binding enzyme ACU12_04240 PF13193 AMP-binding enzyme C-terminal domain ACU12_04245 PF00171 Aldehyde dehydrogenase family ACU12_04250 PF00378 Enoyl-CoA hydratase/isomerase ACU12_04270 PF08450 SMP-30/Gluconolactonase/LRE-like region ACU12_04275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACU12_04275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACU12_04280 PF01728 FtsJ-like methyltransferase ACU12_04280 PF18125 RlmM ferredoxin-like domain ACU12_04295 PF00892 EamA-like transporter family ACU12_04300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ACU12_04300 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACU12_04320 PF00990 Diguanylate cyclase, GGDEF domain ACU12_04320 PF00072 Response regulator receiver domain ACU12_04325 PF00072 Response regulator receiver domain ACU12_04325 PF00196 Bacterial regulatory proteins, luxR family ACU12_04335 PF01625 Peptide methionine sulfoxide reductase ACU12_04340 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACU12_04350 PF03466 LysR substrate binding domain ACU12_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_04355 PF13192 Thioredoxin domain ACU12_04355 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_04360 PF00578 AhpC/TSA family ACU12_04360 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACU12_04365 PF17827 PrmC N-terminal domain ACU12_04365 PF05175 Methyltransferase small domain ACU12_04380 PF00561 alpha/beta hydrolase fold ACU12_04390 PF00293 NUDIX domain ACU12_04395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACU12_04395 PF01367 5'-3' exonuclease, C-terminal SAM fold ACU12_04395 PF00476 DNA polymerase family A ACU12_04395 PF01612 3'-5' exonuclease ACU12_04410 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACU12_04410 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACU12_04410 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ACU12_04435 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ACU12_04440 PF02233 NAD(P) transhydrogenase beta subunit ACU12_04460 PF01063 Amino-transferase class IV ACU12_04465 PF04151 Bacterial pre-peptidase C-terminal domain ACU12_04465 PF00082 Subtilase family ACU12_04470 PF04073 Aminoacyl-tRNA editing domain ACU12_04495 PF03358 NADPH-dependent FMN reductase ACU12_04500 PF03631 Virulence factor BrkB ACU12_04505 PF08534 Redoxin ACU12_04510 PF00708 Acylphosphatase ACU12_04520 PF03976 Polyphosphate kinase 2 (PPK2) ACU12_04525 PF00994 Probable molybdopterin binding domain ACU12_04535 PF03462 PCRF domain ACU12_04535 PF00472 RF-1 domain ACU12_04540 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACU12_04540 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACU12_04540 PF01488 Shikimate / quinate 5-dehydrogenase ACU12_04550 PF03550 Outer membrane lipoprotein LolB ACU12_04555 PF00288 GHMP kinases N terminal domain ACU12_04555 PF08544 GHMP kinases C terminal ACU12_04565 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACU12_04565 PF14572 Phosphoribosyl synthetase-associated domain ACU12_04570 PF14693 Ribosomal protein TL5, C-terminal domain ACU12_04570 PF01386 Ribosomal L25p family ACU12_04575 PF01195 Peptidyl-tRNA hydrolase ACU12_04580 PF01926 50S ribosome-binding GTPase ACU12_04580 PF06071 Protein of unknown function (DUF933) ACU12_04600 PF03143 Elongation factor Tu C-terminal domain ACU12_04600 PF03144 Elongation factor Tu domain 2 ACU12_04600 PF00009 Elongation factor Tu GTP binding domain ACU12_04610 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ACU12_04615 PF02357 Transcription termination factor nusG ACU12_04615 PF00467 KOW motif ACU12_04620 PF03946 Ribosomal protein L11, N-terminal domain ACU12_04620 PF00298 Ribosomal protein L11, RNA binding domain ACU12_04625 PF00687 Ribosomal protein L1p/L10e family ACU12_04630 PF00466 Ribosomal protein L10 ACU12_04635 PF16320 Ribosomal protein L7/L12 dimerisation domain ACU12_04635 PF00542 Ribosomal protein L7/L12 C-terminal domain ACU12_04640 PF00562 RNA polymerase Rpb2, domain 6 ACU12_04640 PF10385 RNA polymerase beta subunit external 1 domain ACU12_04640 PF04565 RNA polymerase Rpb2, domain 3 ACU12_04640 PF04563 RNA polymerase beta subunit ACU12_04640 PF04561 RNA polymerase Rpb2, domain 2 ACU12_04640 PF04560 RNA polymerase Rpb2, domain 7 ACU12_04645 PF04983 RNA polymerase Rpb1, domain 3 ACU12_04645 PF04997 RNA polymerase Rpb1, domain 1 ACU12_04645 PF04998 RNA polymerase Rpb1, domain 5 ACU12_04645 PF05000 RNA polymerase Rpb1, domain 4 ACU12_04645 PF00623 RNA polymerase Rpb1, domain 2 ACU12_04650 PF00164 Ribosomal protein S12/S23 ACU12_04655 PF00177 Ribosomal protein S7p/S5e ACU12_04660 PF00009 Elongation factor Tu GTP binding domain ACU12_04660 PF03764 Elongation factor G, domain IV ACU12_04660 PF14492 Elongation Factor G, domain II ACU12_04660 PF00679 Elongation factor G C-terminus ACU12_04660 PF03144 Elongation factor Tu domain 2 ACU12_04665 PF03144 Elongation factor Tu domain 2 ACU12_04665 PF00009 Elongation factor Tu GTP binding domain ACU12_04665 PF03143 Elongation factor Tu C-terminal domain ACU12_04675 PF00338 Ribosomal protein S10p/S20e ACU12_04680 PF00297 Ribosomal protein L3 ACU12_04685 PF00573 Ribosomal protein L4/L1 family ACU12_04690 PF00276 Ribosomal protein L23 ACU12_04695 PF00181 Ribosomal Proteins L2, RNA binding domain ACU12_04695 PF03947 Ribosomal Proteins L2, C-terminal domain ACU12_04700 PF00203 Ribosomal protein S19 ACU12_04705 PF00237 Ribosomal protein L22p/L17e ACU12_04710 PF00189 Ribosomal protein S3, C-terminal domain ACU12_04710 PF07650 KH domain ACU12_04715 PF00252 Ribosomal protein L16p/L10e ACU12_04720 PF00831 Ribosomal L29 protein ACU12_04725 PF00366 Ribosomal protein S17 ACU12_04730 PF00238 Ribosomal protein L14p/L23e ACU12_04735 PF00467 KOW motif ACU12_04735 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACU12_04740 PF00281 Ribosomal protein L5 ACU12_04740 PF00673 ribosomal L5P family C-terminus ACU12_04745 PF00253 Ribosomal protein S14p/S29e ACU12_04750 PF00410 Ribosomal protein S8 ACU12_04755 PF00347 Ribosomal protein L6 ACU12_04760 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACU12_04765 PF03719 Ribosomal protein S5, C-terminal domain ACU12_04765 PF00333 Ribosomal protein S5, N-terminal domain ACU12_04770 PF00327 Ribosomal protein L30p/L7e ACU12_04775 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACU12_04780 PF00344 SecY translocase ACU12_04785 PF00416 Ribosomal protein S13/S18 ACU12_04790 PF00411 Ribosomal protein S11 ACU12_04795 PF00163 Ribosomal protein S4/S9 N-terminal domain ACU12_04795 PF01479 S4 domain ACU12_04800 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACU12_04800 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACU12_04800 PF01000 RNA polymerase Rpb3/RpoA insert domain ACU12_04805 PF01196 Ribosomal protein L17 ACU12_04810 PF02600 Disulfide bond formation protein DsbB ACU12_04820 PF01474 Class-II DAHP synthetase family ACU12_04845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACU12_04850 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACU12_04850 PF00056 lactate/malate dehydrogenase, NAD binding domain ACU12_04855 PF13333 Integrase core domain ACU12_04855 PF00665 Integrase core domain ACU12_04855 PF13276 HTH-like domain ACU12_04860 PF01527 Transposase ACU12_04875 PF03009 Glycerophosphoryl diester phosphodiesterase family ACU12_04885 PF00480 ROK family ACU12_04895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACU12_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_04900 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_04900 PF00107 Zinc-binding dehydrogenase ACU12_04905 PF00691 OmpA family ACU12_04905 PF05736 OprF membrane domain ACU12_04915 PF00849 RNA pseudouridylate synthase ACU12_04925 PF00155 Aminotransferase class I and II ACU12_04935 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_04940 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_04945 PF00005 ABC transporter ACU12_04945 PF17850 CysA C-terminal regulatory domain ACU12_04945 PF12857 TOBE-like domain ACU12_04955 PF00107 Zinc-binding dehydrogenase ACU12_04955 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_04965 PF04185 Phosphoesterase family ACU12_04965 PF05506 Domain of unknown function (DUF756) ACU12_04975 PF10459 Peptidase S46 ACU12_04980 PF00300 Histidine phosphatase superfamily (branch 1) ACU12_04985 PF02875 Mur ligase family, glutamate ligase domain ACU12_04985 PF08245 Mur ligase middle domain ACU12_05000 PF00156 Phosphoribosyl transferase domain ACU12_05005 PF04305 Protein of unknown function (DUF455) ACU12_05025 PF00149 Calcineurin-like phosphoesterase ACU12_05030 PF01569 PAP2 superfamily ACU12_05035 PF13439 Glycosyltransferase Family 4 ACU12_05035 PF00534 Glycosyl transferases group 1 ACU12_05040 PF02541 Ppx/GppA phosphatase family ACU12_05045 PF13089 Polyphosphate kinase N-terminal domain ACU12_05045 PF17941 Polyphosphate kinase C-terminal domain 1 ACU12_05045 PF13090 Polyphosphate kinase C-terminal domain 2 ACU12_05045 PF02503 Polyphosphate kinase middle domain ACU12_05050 PF00512 His Kinase A (phospho-acceptor) domain ACU12_05050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_05050 PF11808 Phosphate regulon sensor protein PhoR ACU12_05050 PF00989 PAS fold ACU12_05055 PF00072 Response regulator receiver domain ACU12_05055 PF00486 Transcriptional regulatory protein, C terminal ACU12_05060 PF13181 Tetratricopeptide repeat ACU12_05060 PF01435 Peptidase family M48 ACU12_05065 PF00462 Glutaredoxin ACU12_05075 PF18324 Hypothetical protein TT1725 ACU12_05075 PF00180 Isocitrate/isopropylmalate dehydrogenase ACU12_05110 PF01527 Transposase ACU12_05125 PF05698 Bacterial trigger factor protein (TF) C-terminus ACU12_05125 PF05697 Bacterial trigger factor protein (TF) ACU12_05130 PF00574 Clp protease ACU12_05135 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_05135 PF07724 AAA domain (Cdc48 subfamily) ACU12_05135 PF06689 ClpX C4-type zinc finger ACU12_05140 PF05362 Lon protease (S16) C-terminal proteolytic domain ACU12_05140 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_05140 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACU12_05145 PF00216 Bacterial DNA-binding protein ACU12_05170 PF05257 CHAP domain ACU12_05170 PF01476 LysM domain ACU12_05175 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACU12_05175 PF00753 Metallo-beta-lactamase superfamily ACU12_05185 PF00075 RNase H ACU12_05190 PF00929 Exonuclease ACU12_05210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACU12_05220 PF12706 Beta-lactamase superfamily domain ACU12_05220 PF00753 Metallo-beta-lactamase superfamily ACU12_05225 PF04055 Radical SAM superfamily ACU12_05225 PF06463 Molybdenum Cofactor Synthesis C ACU12_05235 PF01967 MoaC family ACU12_05240 PF02597 ThiS family ACU12_05245 PF02391 MoaE protein ACU12_05255 PF12169 DNA polymerase III subunits gamma and tau domain III ACU12_05255 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACU12_05255 PF12170 DNA polymerase III tau subunit V interacting with alpha ACU12_05260 PF02575 YbaB/EbfC DNA-binding family ACU12_05265 PF02132 RecR protein ACU12_05265 PF13662 Toprim domain ACU12_05270 PF01230 HIT domain ACU12_05280 PF13559 Domain of unknown function (DUF4129) ACU12_05280 PF01841 Transglutaminase-like superfamily ACU12_05280 PF11992 Domain of unknown function (DUF3488) ACU12_05290 PF07726 ATPase family associated with various cellular activities (AAA) ACU12_05290 PF17863 AAA lid domain ACU12_05305 PF02545 Maf-like protein ACU12_05310 PF02620 Large ribosomal RNA subunit accumulation protein YceD ACU12_05315 PF01783 Ribosomal L32p protein family ACU12_05320 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACU12_05320 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACU12_05330 PF00698 Acyl transferase domain ACU12_05340 PF00550 Phosphopantetheine attachment site ACU12_05345 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_05345 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_05350 PF00425 chorismate binding enzyme ACU12_05350 PF04715 Anthranilate synthase component I, N terminal region ACU12_05355 PF02618 YceG-like family ACU12_05360 PF09115 DNA polymerase III, delta subunit, C terminal ACU12_05385 PF00158 Sigma-54 interaction domain ACU12_05385 PF06506 Propionate catabolism activator ACU12_05385 PF02954 Bacterial regulatory protein, Fis family ACU12_05395 PF00285 Citrate synthase, C-terminal domain ACU12_05400 PF00330 Aconitase family (aconitate hydratase) ACU12_05400 PF00694 Aconitase C-terminal domain ACU12_05405 PF04303 PrpF protein ACU12_05410 PF07715 TonB-dependent Receptor Plug Domain ACU12_05410 PF00593 TonB dependent receptor ACU12_05445 PF08534 Redoxin ACU12_05455 PF01556 DnaJ C terminal domain ACU12_05455 PF00226 DnaJ domain ACU12_05460 PF00072 Response regulator receiver domain ACU12_05465 PF12221 Bacterial membrane protein N terminal ACU12_05465 PF01145 SPFH domain / Band 7 family ACU12_05470 PF01145 SPFH domain / Band 7 family ACU12_05480 PF00709 Adenylosuccinate synthetase ACU12_05485 PF01433 Peptidase family M1 domain ACU12_05485 PF11838 ERAP1-like C-terminal domain ACU12_05500 PF04717 Type VI secretion system, phage-baseplate injector ACU12_05500 PF16671 Actin cross-linking domain ACU12_05535 PF01420 Type I restriction modification DNA specificity domain ACU12_05540 PF02384 N-6 DNA Methylase ACU12_05550 PF08463 EcoEI R protein C-terminal ACU12_05550 PF00271 Helicase conserved C-terminal domain ACU12_05550 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACU12_05550 PF04851 Type III restriction enzyme, res subunit ACU12_05565 PF04851 Type III restriction enzyme, res subunit ACU12_05565 PF08463 EcoEI R protein C-terminal ACU12_05565 PF00271 Helicase conserved C-terminal domain ACU12_05565 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) ACU12_05580 PF02384 N-6 DNA Methylase ACU12_05580 PF12161 HsdM N-terminal domain ACU12_05620 PF00300 Histidine phosphatase superfamily (branch 1) ACU12_05620 PF13456 Reverse transcriptase-like ACU12_05625 PF01256 Carbohydrate kinase ACU12_05645 PF01726 LexA DNA binding domain ACU12_05645 PF00717 Peptidase S24-like ACU12_05660 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACU12_05660 PF02811 PHP domain ACU12_05660 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACU12_05660 PF14579 Helix-hairpin-helix motif ACU12_05675 PF03169 OPT oligopeptide transporter protein ACU12_05685 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ACU12_05685 PF07676 WD40-like Beta Propeller Repeat ACU12_05685 PF00326 Prolyl oligopeptidase family ACU12_05695 PF02311 AraC-like ligand binding domain ACU12_05695 PF12833 Helix-turn-helix domain ACU12_05715 PF06628 Catalase-related immune-responsive ACU12_05715 PF00199 Catalase ACU12_05715 PF18011 C-terminal domain found in long catalases ACU12_05740 PF02347 Glycine cleavage system P-protein ACU12_05760 PF03412 Peptidase C39 family ACU12_05760 PF00664 ABC transporter transmembrane region ACU12_05760 PF00005 ABC transporter ACU12_05785 PF00884 Sulfatase ACU12_05785 PF08019 Phosphoethanolamine transferase EptA/EptB ACU12_05795 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ACU12_05800 PF00072 Response regulator receiver domain ACU12_05800 PF00486 Transcriptional regulatory protein, C terminal ACU12_05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_05805 PF00512 His Kinase A (phospho-acceptor) domain ACU12_05805 PF08521 Two-component sensor kinase N-terminal ACU12_05815 PF03776 Septum formation topological specificity factor MinE ACU12_05820 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACU12_05825 PF03775 Septum formation inhibitor MinC, C-terminal domain ACU12_05825 PF05209 Septum formation inhibitor MinC, N-terminal domain ACU12_05835 PF07730 Histidine kinase ACU12_05840 PF00072 Response regulator receiver domain ACU12_05840 PF00196 Bacterial regulatory proteins, luxR family ACU12_05855 PF00730 HhH-GPD superfamily base excision DNA repair protein ACU12_05880 PF02222 ATP-grasp domain ACU12_05885 PF01527 Transposase ACU12_05925 PF04972 BON domain ACU12_05925 PF00691 OmpA family ACU12_05940 PF04717 Type VI secretion system, phage-baseplate injector ACU12_05955 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06005 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06005 PF16671 Actin cross-linking domain ACU12_06010 PF13276 HTH-like domain ACU12_06010 PF13683 Integrase core domain ACU12_06015 PF01527 Transposase ACU12_06030 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06030 PF16671 Actin cross-linking domain ACU12_06055 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06055 PF16671 Actin cross-linking domain ACU12_06110 PF17871 AAA lid domain ACU12_06110 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_06110 PF07724 AAA domain (Cdc48 subfamily) ACU12_06110 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_06120 PF16671 Actin cross-linking domain ACU12_06120 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06145 PF01609 Transposase DDE domain ACU12_06145 PF05598 Transposase domain (DUF772) ACU12_06160 PF05598 Transposase domain (DUF772) ACU12_06180 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACU12_06190 PF01761 3-dehydroquinate synthase ACU12_06195 PF01202 Shikimate kinase ACU12_06200 PF01243 Pyridoxamine 5'-phosphate oxidase ACU12_06200 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACU12_06210 PF04012 PspA/IM30 family ACU12_06235 PF03738 Glutathionylspermidine synthase preATP-grasp ACU12_06265 PF09278 MerR, DNA binding ACU12_06265 PF00376 MerR family regulatory protein ACU12_06300 PF12706 Beta-lactamase superfamily domain ACU12_06305 PF05598 Transposase domain (DUF772) ACU12_06305 PF01609 Transposase DDE domain ACU12_06320 PF00324 Amino acid permease ACU12_06325 PF00196 Bacterial regulatory proteins, luxR family ACU12_06330 PF00561 alpha/beta hydrolase fold ACU12_06335 PF00324 Amino acid permease ACU12_06340 PF01654 Cytochrome bd terminal oxidase subunit I ACU12_06345 PF02322 Cytochrome bd terminal oxidase subunit II ACU12_06350 PF00756 Putative esterase ACU12_06355 PF01769 Divalent cation transporter ACU12_06355 PF03448 MgtE intracellular N domain ACU12_06355 PF00571 CBS domain ACU12_06360 PF02896 PEP-utilising enzyme, TIM barrel domain ACU12_06360 PF05524 PEP-utilising enzyme, N-terminal ACU12_06360 PF00391 PEP-utilising enzyme, mobile domain ACU12_06365 PF00381 PTS HPr component phosphorylation site ACU12_06375 PF03668 P-loop ATPase protein family ACU12_06380 PF07475 HPr Serine kinase C-terminal domain ACU12_06380 PF02603 HPr Serine kinase N terminus ACU12_06385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACU12_06390 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACU12_06395 PF04963 Sigma-54 factor, core binding domain ACU12_06395 PF00309 Sigma-54 factor, Activator interacting domain (AID) ACU12_06395 PF04552 Sigma-54, DNA binding domain ACU12_06400 PF00005 ABC transporter ACU12_06405 PF03968 OstA-like protein ACU12_06420 PF00571 CBS domain ACU12_06420 PF01380 SIS domain ACU12_06425 PF01722 BolA-like protein ACU12_06430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACU12_06450 PF00551 Formyl transferase ACU12_06465 PF02769 AIR synthase related protein, C-terminal domain ACU12_06465 PF00586 AIR synthase related protein, N-terminal domain ACU12_06475 PF01594 AI-2E family transporter ACU12_06480 PF00308 Bacterial dnaA protein ACU12_06485 PF00483 Nucleotidyl transferase ACU12_06490 PF01636 Phosphotransferase enzyme family ACU12_06510 PF01546 Peptidase family M20/M25/M40 ACU12_06510 PF07687 Peptidase dimerisation domain ACU12_06535 PF00355 Rieske [2Fe-2S] domain ACU12_06545 PF00266 Aminotransferase class-V ACU12_06550 PF01458 Uncharacterized protein family (UPF0051) ACU12_06555 PF00005 ABC transporter ACU12_06560 PF01458 Uncharacterized protein family (UPF0051) ACU12_06565 PF02082 Transcriptional regulator ACU12_06610 PF03807 NADP oxidoreductase coenzyme F420-dependent ACU12_06610 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACU12_06615 PF01168 Alanine racemase, N-terminal domain ACU12_06620 PF00437 Type II/IV secretion system protein ACU12_06625 PF00437 Type II/IV secretion system protein ACU12_06640 PF00958 GMP synthase C terminal domain ACU12_06640 PF13673 Acetyltransferase (GNAT) domain ACU12_06640 PF03352 Methyladenine glycosylase ACU12_06640 PF13302 Acetyltransferase (GNAT) domain ACU12_06640 PF00117 Glutamine amidotransferase class-I ACU12_06655 PF02622 Uncharacterized ACR, COG1678 ACU12_06660 PF03652 Holliday junction resolvase ACU12_06665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACU12_06665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACU12_06670 PF02566 OsmC-like protein ACU12_06680 PF02567 Phenazine biosynthesis-like protein ACU12_06690 PF00696 Amino acid kinase family ACU12_06690 PF01842 ACT domain ACU12_06705 PF08245 Mur ligase middle domain ACU12_06720 PF05598 Transposase domain (DUF772) ACU12_06730 PF00348 Polyprenyl synthetase ACU12_06735 PF00436 Single-strand binding protein family ACU12_06740 PF01590 GAF domain ACU12_06740 PF00990 Diguanylate cyclase, GGDEF domain ACU12_06740 PF00360 Phytochrome region ACU12_06740 PF00563 EAL domain ACU12_06745 PF14765 Polyketide synthase dehydratase ACU12_06745 PF00550 Phosphopantetheine attachment site ACU12_06745 PF08659 KR domain ACU12_06745 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_06745 PF16197 Ketoacyl-synthetase C-terminal extension ACU12_06745 PF00107 Zinc-binding dehydrogenase ACU12_06745 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_06745 PF00698 Acyl transferase domain ACU12_06745 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_06755 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACU12_06755 PF01799 [2Fe-2S] binding domain ACU12_06755 PF00111 2Fe-2S iron-sulfur cluster binding domain ACU12_06760 PF03450 CO dehydrogenase flavoprotein C-terminal domain ACU12_06760 PF00941 FAD binding domain in molybdopterin dehydrogenase ACU12_06765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ACU12_06765 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACU12_06770 PF13478 XdhC Rossmann domain ACU12_06770 PF02625 XdhC and CoxI family ACU12_06795 PF04328 Selenoprotein, putative ACU12_06800 PF02554 Carbon starvation protein CstA ACU12_06800 PF13722 5TM C-terminal transporter carbon starvation CstA ACU12_06805 PF05726 Pirin C-terminal cupin domain ACU12_06805 PF02678 Pirin ACU12_06815 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06850 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06850 PF16671 Actin cross-linking domain ACU12_06895 PF02678 Pirin ACU12_06895 PF05726 Pirin C-terminal cupin domain ACU12_06905 PF04493 Endonuclease V ACU12_06910 PF00300 Histidine phosphatase superfamily (branch 1) ACU12_06915 PF13276 HTH-like domain ACU12_06915 PF13683 Integrase core domain ACU12_06920 PF01527 Transposase ACU12_06925 PF03377 TAL effector repeat ACU12_06930 PF04717 Type VI secretion system, phage-baseplate injector ACU12_06930 PF16671 Actin cross-linking domain ACU12_06940 PF13276 HTH-like domain ACU12_06940 PF13333 Integrase core domain ACU12_06940 PF00665 Integrase core domain ACU12_06945 PF03377 TAL effector repeat ACU12_06950 PF03377 TAL effector repeat ACU12_06955 PF03377 TAL effector repeat ACU12_06970 PF13333 Integrase core domain ACU12_06970 PF00665 Integrase core domain ACU12_06970 PF13276 HTH-like domain ACU12_06975 PF03377 TAL effector repeat ACU12_06990 PF00072 Response regulator receiver domain ACU12_06990 PF01339 CheB methylesterase ACU12_06995 PF01739 CheR methyltransferase, SAM binding domain ACU12_06995 PF03705 CheR methyltransferase, all-alpha domain ACU12_07000 PF13426 PAS domain ACU12_07000 PF00563 EAL domain ACU12_07000 PF00990 Diguanylate cyclase, GGDEF domain ACU12_07005 PF01584 CheW-like domain ACU12_07010 PF00672 HAMP domain ACU12_07010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_07010 PF02203 Tar ligand binding domain homologue ACU12_07015 PF09078 CheY binding ACU12_07015 PF02895 Signal transducing histidine kinase, homodimeric domain ACU12_07015 PF01627 Hpt domain ACU12_07015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_07015 PF01584 CheW-like domain ACU12_07025 PF00271 Helicase conserved C-terminal domain ACU12_07025 PF00270 DEAD/DEAH box helicase ACU12_07025 PF03461 TRCF domain ACU12_07025 PF17757 UvrB interaction domain ACU12_07025 PF02559 CarD-like/TRCF domain ACU12_07035 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ACU12_07060 PF00795 Carbon-nitrogen hydrolase ACU12_07070 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACU12_07075 PF01475 Ferric uptake regulator family ACU12_07110 PF07715 TonB-dependent Receptor Plug Domain ACU12_07110 PF00593 TonB dependent receptor ACU12_07125 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_07125 PF00107 Zinc-binding dehydrogenase ACU12_07130 PF00654 Voltage gated chloride channel ACU12_07140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACU12_07140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACU12_07190 PF03880 DbpA RNA binding domain ACU12_07190 PF00270 DEAD/DEAH box helicase ACU12_07190 PF00271 Helicase conserved C-terminal domain ACU12_07195 PF00990 Diguanylate cyclase, GGDEF domain ACU12_07195 PF00563 EAL domain ACU12_07195 PF08448 PAS fold ACU12_07200 PF00849 RNA pseudouridylate synthase ACU12_07200 PF01479 S4 domain ACU12_07215 PF03737 Aldolase/RraA ACU12_07220 PF00144 Beta-lactamase ACU12_07225 PF00999 Sodium/hydrogen exchanger family ACU12_07230 PF00672 HAMP domain ACU12_07230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_07230 PF00512 His Kinase A (phospho-acceptor) domain ACU12_07235 PF00072 Response regulator receiver domain ACU12_07235 PF00486 Transcriptional regulatory protein, C terminal ACU12_07240 PF02321 Outer membrane efflux protein ACU12_07255 PF00873 AcrB/AcrD/AcrF family ACU12_07265 PF00005 ABC transporter ACU12_07265 PF00664 ABC transporter transmembrane region ACU12_07285 PF13936 Helix-turn-helix domain ACU12_07285 PF00665 Integrase core domain ACU12_07325 PF00085 Thioredoxin ACU12_07335 PF00133 tRNA synthetases class I (I, L, M and V) ACU12_07335 PF13603 Leucyl-tRNA synthetase, Domain 2 ACU12_07335 PF08264 Anticodon-binding domain of tRNA ACU12_07350 PF01467 Cytidylyltransferase-like ACU12_07370 PF02590 Predicted SPOUT methyltransferase ACU12_07385 PF04402 Protein of unknown function (DUF541) ACU12_07390 PF02545 Maf-like protein ACU12_07395 PF10150 Ribonuclease E/G family ACU12_07395 PF00575 S1 RNA binding domain ACU12_07400 PF13502 AsmA-like C-terminal region ACU12_07400 PF13116 Protein of unknown function ACU12_07410 PF01523 Putative modulator of DNA gyrase ACU12_07415 PF04751 Protein of unknown function (DUF615) ACU12_07420 PF01523 Putative modulator of DNA gyrase ACU12_07435 PF05598 Transposase domain (DUF772) ACU12_07445 PF14521 Lysine-specific metallo-endopeptidase ACU12_07450 PF00348 Polyprenyl synthetase ACU12_07455 PF02609 Exonuclease VII small subunit ACU12_07460 PF11734 TilS substrate C-terminal domain ACU12_07460 PF01171 PP-loop family ACU12_07460 PF09179 TilS substrate binding domain ACU12_07465 PF00245 Alkaline phosphatase ACU12_07470 PF00375 Sodium:dicarboxylate symporter family ACU12_07490 PF00877 NlpC/P60 family ACU12_07495 PF00877 NlpC/P60 family ACU12_07500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACU12_07505 PF04235 Protein of unknown function (DUF418) ACU12_07510 PF01266 FAD dependent oxidoreductase ACU12_07515 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_07515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACU12_07520 PF03377 TAL effector repeat ACU12_07530 PF01527 Transposase ACU12_07535 PF13276 HTH-like domain ACU12_07535 PF13683 Integrase core domain ACU12_07540 PF03377 TAL effector repeat ACU12_07545 PF13333 Integrase core domain ACU12_07545 PF13276 HTH-like domain ACU12_07545 PF00665 Integrase core domain ACU12_07555 PF04717 Type VI secretion system, phage-baseplate injector ACU12_07555 PF16671 Actin cross-linking domain ACU12_07560 PF03377 TAL effector repeat ACU12_07575 PF05598 Transposase domain (DUF772) ACU12_07615 PF00082 Subtilase family ACU12_07620 PF01668 SmpB protein ACU12_07625 PF03364 Polyketide cyclase / dehydrase and lipid transport ACU12_07630 PF03658 RnfH family Ubiquitin ACU12_07635 PF04355 SmpA / OmlA family ACU12_07640 PF01475 Ferric uptake regulator family ACU12_07645 PF02463 RecF/RecN/SMC N terminal domain ACU12_07650 PF01628 HrcA protein C terminal domain ACU12_07650 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ACU12_07655 PF01025 GrpE ACU12_07660 PF00012 Hsp70 protein ACU12_07665 PF00226 DnaJ domain ACU12_07665 PF01556 DnaJ C terminal domain ACU12_07665 PF00684 DnaJ central domain ACU12_07670 PF08543 Phosphomethylpyrimidine kinase ACU12_07685 PF03466 LysR substrate binding domain ACU12_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_07690 PF00664 ABC transporter transmembrane region ACU12_07690 PF00005 ABC transporter ACU12_07695 PF01205 Uncharacterized protein family UPF0029 ACU12_07700 PF03641 Possible lysine decarboxylase ACU12_07705 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_07705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACU12_07710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACU12_07710 PF02817 e3 binding domain ACU12_07710 PF00364 Biotin-requiring enzyme ACU12_07715 PF02779 Transketolase, pyrimidine binding domain ACU12_07715 PF00676 Dehydrogenase E1 component ACU12_07715 PF16870 2-oxoglutarate dehydrogenase C-terminal ACU12_07715 PF16078 2-oxoglutarate dehydrogenase N-terminus ACU12_07725 PF08007 Cupin superfamily protein ACU12_07740 PF00206 Lyase ACU12_07740 PF08328 Adenylosuccinate lyase C-terminal ACU12_07755 PF10415 Fumarase C C-terminus ACU12_07755 PF00206 Lyase ACU12_07785 PF00005 ABC transporter ACU12_07790 PF00392 Bacterial regulatory proteins, gntR family ACU12_07800 PF00255 Glutathione peroxidase ACU12_07805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACU12_07805 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACU12_07810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACU12_07810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACU12_07810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACU12_07815 PF04102 SlyX ACU12_07835 PF07690 Major Facilitator Superfamily ACU12_07840 PF00294 pfkB family carbohydrate kinase ACU12_07860 PF01209 ubiE/COQ5 methyltransferase family ACU12_07865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_07865 PF02770 Acyl-CoA dehydrogenase, middle domain ACU12_07865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_07885 PF08206 Ribonuclease B OB domain ACU12_07885 PF00575 S1 RNA binding domain ACU12_07885 PF17876 Cold shock domain ACU12_07885 PF08461 Ribonuclease R winged-helix domain ACU12_07885 PF00773 RNB domain ACU12_07895 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACU12_07895 PF00588 SpoU rRNA Methylase family ACU12_07900 PF00990 Diguanylate cyclase, GGDEF domain ACU12_07900 PF07694 5TMR of 5TMR-LYT ACU12_07905 PF00929 Exonuclease ACU12_07915 PF01895 PhoU domain ACU12_07920 PF00005 ABC transporter ACU12_07925 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_07930 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_07935 PF12849 PBP superfamily domain ACU12_07940 PF12849 PBP superfamily domain ACU12_07955 PF00484 Carbonic anhydrase ACU12_07960 PF00916 Sulfate permease family ACU12_07960 PF01740 STAS domain ACU12_07965 PF10576 Iron-sulfur binding domain of endonuclease III ACU12_07965 PF00730 HhH-GPD superfamily base excision DNA repair protein ACU12_07965 PF00633 Helix-hairpin-helix motif ACU12_07975 PF00378 Enoyl-CoA hydratase/isomerase ACU12_07980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACU12_07980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACU12_07985 PF00293 NUDIX domain ACU12_07990 PF00581 Rhodanese-like domain ACU12_08030 PF01170 Putative RNA methylase family UPF0020 ACU12_08030 PF02926 THUMP domain ACU12_08030 PF10672 S-adenosylmethionine-dependent methyltransferase ACU12_08035 PF01513 ATP-NAD kinase ACU12_08050 PF00248 Aldo/keto reductase family ACU12_08060 PF00929 Exonuclease ACU12_08060 PF08411 Exonuclease C-terminal ACU12_08065 PF01494 FAD binding domain ACU12_08070 PF00266 Aminotransferase class-V ACU12_08080 PF06052 3-hydroxyanthranilic acid dioxygenase ACU12_08085 PF00484 Carbonic anhydrase ACU12_08110 PF01336 OB-fold nucleic acid binding domain ACU12_08110 PF00152 tRNA synthetases class II (D, K and N) ACU12_08115 PF01521 Iron-sulphur cluster biosynthesis ACU12_08120 PF01250 Ribosomal protein S6 ACU12_08125 PF01084 Ribosomal protein S18 ACU12_08130 PF03948 Ribosomal protein L9, C-terminal domain ACU12_08130 PF01281 Ribosomal protein L9, N-terminal domain ACU12_08135 PF02463 RecF/RecN/SMC N terminal domain ACU12_08140 PF04354 ZipA, C-terminal FtsZ-binding domain ACU12_08150 PF01653 NAD-dependent DNA ligase adenylation domain ACU12_08150 PF12826 Helix-hairpin-helix motif ACU12_08150 PF00533 BRCA1 C Terminus (BRCT) domain ACU12_08150 PF03120 NAD-dependent DNA ligase OB-fold domain ACU12_08150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACU12_08155 PF00152 tRNA synthetases class II (D, K and N) ACU12_08165 PF01008 Initiation factor 2 subunit family ACU12_08170 PF03989 DNA gyrase C-terminal domain, beta-propeller ACU12_08170 PF00521 DNA gyrase/topoisomerase IV, subunit A ACU12_08175 PF05598 Transposase domain (DUF772) ACU12_08195 PF05598 Transposase domain (DUF772) ACU12_08200 PF05598 Transposase domain (DUF772) ACU12_08210 PF05598 Transposase domain (DUF772) ACU12_08210 PF01609 Transposase DDE domain ACU12_08215 PF05598 Transposase domain (DUF772) ACU12_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_08225 PF03466 LysR substrate binding domain ACU12_08260 PF01609 Transposase DDE domain ACU12_08260 PF05598 Transposase domain (DUF772) ACU12_08270 PF00665 Integrase core domain ACU12_08270 PF13936 Helix-turn-helix domain ACU12_08285 PF03377 TAL effector repeat ACU12_08290 PF13683 Integrase core domain ACU12_08290 PF13276 HTH-like domain ACU12_08300 PF02203 Tar ligand binding domain homologue ACU12_08300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_08300 PF00672 HAMP domain ACU12_08315 PF05598 Transposase domain (DUF772) ACU12_08315 PF01609 Transposase DDE domain ACU12_08335 PF03918 Cytochrome C biogenesis protein ACU12_08340 PF08534 Redoxin ACU12_08345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACU12_08345 PF01578 Cytochrome C assembly protein ACU12_08350 PF03100 CcmE ACU12_08355 PF04995 Heme exporter protein D (CcmD) ACU12_08360 PF01578 Cytochrome C assembly protein ACU12_08365 PF00082 Subtilase family ACU12_08375 PF08281 Sigma-70, region 4 ACU12_08375 PF04542 Sigma-70 region 2 ACU12_08385 PF00034 Cytochrome c ACU12_08400 PF05523 WxcM-like, C-terminal ACU12_08420 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACU12_08425 PF01943 Polysaccharide biosynthesis protein ACU12_08430 PF00535 Glycosyl transferase family 2 ACU12_08445 PF08241 Methyltransferase domain ACU12_08465 PF00534 Glycosyl transferases group 1 ACU12_08465 PF13579 Glycosyl transferase 4-like domain ACU12_08480 PF00005 ABC transporter ACU12_08485 PF00664 ABC transporter transmembrane region ACU12_08485 PF00005 ABC transporter ACU12_08490 PF00083 Sugar (and other) transporter ACU12_08495 PF00296 Luciferase-like monooxygenase ACU12_08510 PF00571 CBS domain ACU12_08510 PF03471 Transporter associated domain ACU12_08510 PF01595 Cyclin M transmembrane N-terminal domain ACU12_08520 PF01384 Phosphate transporter family ACU12_08535 PF00204 DNA gyrase B ACU12_08535 PF00986 DNA gyrase B subunit, carboxyl terminus ACU12_08535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_08535 PF01751 Toprim domain ACU12_08545 PF06418 CTP synthase N-terminus ACU12_08545 PF00117 Glutamine amidotransferase class-I ACU12_08550 PF00793 DAHP synthetase I family ACU12_08560 PF00113 Enolase, C-terminal TIM barrel domain ACU12_08560 PF03952 Enolase, N-terminal domain ACU12_08565 PF04977 Septum formation initiator ACU12_08570 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACU12_08575 PF02542 YgbB family ACU12_08580 PF01142 tRNA pseudouridine synthase D (TruD) ACU12_08585 PF01713 Smr domain ACU12_08590 PF01975 Survival protein SurE ACU12_08600 PF09335 SNARE associated Golgi protein ACU12_08605 PF01551 Peptidase family M23 ACU12_08605 PF01476 LysM domain ACU12_08610 PF04430 Protein of unknown function (DUF498/DUF598) ACU12_08615 PF01985 CRS1 / YhbY (CRM) domain ACU12_08620 PF01728 FtsJ-like methyltransferase ACU12_08625 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_08625 PF17862 AAA+ lid domain ACU12_08625 PF06480 FtsH Extracellular ACU12_08625 PF01434 Peptidase family M41 ACU12_08630 PF00809 Pterin binding enzyme ACU12_08640 PF17209 Hfq protein ACU12_08645 PF01926 50S ribosome-binding GTPase ACU12_08645 PF13167 GTP-binding GTPase N-terminal ACU12_08645 PF16360 GTP-binding GTPase Middle Region ACU12_08650 PF02464 Competence-damaged protein ACU12_08655 PF03109 ABC1 family ACU12_08660 PF00717 Peptidase S24-like ACU12_08660 PF01726 LexA DNA binding domain ACU12_08665 PF00154 recA bacterial DNA recombination protein ACU12_08670 PF02631 RecX family ACU12_08675 PF01411 tRNA synthetases class II (A) ACU12_08675 PF02272 DHHA1 domain ACU12_08675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACU12_08680 PF02599 Global regulator protein family ACU12_08715 PF08460 Bacterial SH3 domain ACU12_08715 PF01551 Peptidase family M23 ACU12_08720 PF01979 Amidohydrolase family ACU12_08725 PF01809 Putative membrane protein insertion efficiency factor ACU12_08735 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACU12_08750 PF02657 Fe-S metabolism associated domain ACU12_08755 PF09190 DALR domain ACU12_08755 PF01406 tRNA synthetases class I (C) catalytic domain ACU12_08765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACU12_08765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACU12_08770 PF00764 Arginosuccinate synthase ACU12_08780 PF07687 Peptidase dimerisation domain ACU12_08780 PF01546 Peptidase family M20/M25/M40 ACU12_08785 PF00696 Amino acid kinase family ACU12_08785 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase ACU12_08795 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACU12_08800 PF00206 Lyase ACU12_08815 PF01472 PUA domain ACU12_08815 PF00696 Amino acid kinase family ACU12_08820 PF00171 Aldehyde dehydrogenase family ACU12_08825 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ACU12_08825 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ACU12_08845 PF02322 Cytochrome bd terminal oxidase subunit II ACU12_08850 PF01654 Cytochrome bd terminal oxidase subunit I ACU12_08855 PF01654 Cytochrome bd terminal oxidase subunit I ACU12_08860 PF00664 ABC transporter transmembrane region ACU12_08860 PF00005 ABC transporter ACU12_08865 PF00664 ABC transporter transmembrane region ACU12_08865 PF00005 ABC transporter ACU12_08875 PF00561 alpha/beta hydrolase fold ACU12_08885 PF03918 Cytochrome C biogenesis protein ACU12_08890 PF08534 Redoxin ACU12_08895 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACU12_08895 PF01578 Cytochrome C assembly protein ACU12_08900 PF03100 CcmE ACU12_08910 PF01578 Cytochrome C assembly protein ACU12_08915 PF03379 CcmB protein ACU12_08920 PF00005 ABC transporter ACU12_08925 PF00155 Aminotransferase class I and II ACU12_08930 PF00795 Carbon-nitrogen hydrolase ACU12_08945 PF01479 S4 domain ACU12_08945 PF00849 RNA pseudouridylate synthase ACU12_08950 PF04079 Segregation and condensation complex subunit ScpB ACU12_08955 PF02616 Segregation and condensation protein ScpA ACU12_08960 PF03795 YCII-related domain ACU12_08970 PF00356 Bacterial regulatory proteins, lacI family ACU12_08990 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_08995 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_09015 PF00795 Carbon-nitrogen hydrolase ACU12_09020 PF04371 Porphyromonas-type peptidyl-arginine deiminase ACU12_09030 PF00444 Ribosomal protein L36 ACU12_09035 PF02224 Cytidylate kinase ACU12_09040 PF00575 S1 RNA binding domain ACU12_09045 PF00216 Bacterial DNA-binding protein ACU12_09055 PF18073 Rubredoxin metal binding domain ACU12_09060 PF00953 Glycosyl transferase family 4 ACU12_09065 PF02719 Polysaccharide biosynthesis protein ACU12_09070 PF00483 Nucleotidyl transferase ACU12_09075 PF02254 TrkA-N domain ACU12_09075 PF00999 Sodium/hydrogen exchanger family ACU12_09090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACU12_09090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACU12_09095 PF00571 CBS domain ACU12_09095 PF00478 IMP dehydrogenase / GMP reductase domain ACU12_09100 PF00958 GMP synthase C terminal domain ACU12_09100 PF02540 NAD synthase ACU12_09100 PF00117 Glutamine amidotransferase class-I ACU12_09105 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ACU12_09110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACU12_09110 PF00361 Proton-conducting membrane transporter ACU12_09110 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ACU12_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_09115 PF03466 LysR substrate binding domain ACU12_09130 PF03601 Conserved hypothetical protein 698 ACU12_09135 PF03466 LysR substrate binding domain ACU12_09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_09140 PF03466 LysR substrate binding domain ACU12_09160 PF01566 Natural resistance-associated macrophage protein ACU12_09165 PF01325 Iron dependent repressor, N-terminal DNA binding domain ACU12_09165 PF02742 Iron dependent repressor, metal binding and dimerisation domain ACU12_09170 PF14437 MafB19-like deaminase ACU12_09175 PF00929 Exonuclease ACU12_09180 PF05552 Conserved TM helix ACU12_09180 PF00924 Mechanosensitive ion channel ACU12_09185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ACU12_09185 PF02896 PEP-utilising enzyme, TIM barrel domain ACU12_09185 PF00391 PEP-utilising enzyme, mobile domain ACU12_09190 PF03618 Kinase/pyrophosphorylase ACU12_09210 PF01066 CDP-alcohol phosphatidyltransferase ACU12_09220 PF00561 alpha/beta hydrolase fold ACU12_09235 PF00355 Rieske [2Fe-2S] domain ACU12_09235 PF01266 FAD dependent oxidoreductase ACU12_09245 PF00575 S1 RNA binding domain ACU12_09245 PF17674 HHH domain ACU12_09245 PF16921 Tex protein YqgF-like domain ACU12_09245 PF09371 Tex-like protein N-terminal domain ACU12_09250 PF00072 Response regulator receiver domain ACU12_09250 PF09308 LuxQ, periplasmic ACU12_09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_09250 PF00512 His Kinase A (phospho-acceptor) domain ACU12_09295 PF05598 Transposase domain (DUF772) ACU12_09335 PF00034 Cytochrome c ACU12_09345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_09350 PF00873 AcrB/AcrD/AcrF family ACU12_09355 PF00873 AcrB/AcrD/AcrF family ACU12_09360 PF13936 Helix-turn-helix domain ACU12_09360 PF00665 Integrase core domain ACU12_09375 PF01081 KDPG and KHG aldolase ACU12_09380 PF00920 Dehydratase family ACU12_09385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACU12_09390 PF02685 Glucokinase ACU12_09395 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACU12_09395 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACU12_09400 PF00005 ABC transporter ACU12_09400 PF17912 MalK OB fold domain ACU12_09405 PF01571 Aminomethyltransferase folate-binding domain ACU12_09410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACU12_09415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ACU12_09420 PF00890 FAD binding domain ACU12_09420 PF02910 Fumarate reductase flavoprotein C-term ACU12_09430 PF13085 2Fe-2S iron-sulfur cluster binding domain ACU12_09435 PF03937 Flavinator of succinate dehydrogenase ACU12_09445 PF02687 FtsX-like permease family ACU12_09445 PF12704 MacB-like periplasmic core domain ACU12_09450 PF00005 ABC transporter ACU12_09465 PF00753 Metallo-beta-lactamase superfamily ACU12_09465 PF03772 Competence protein ACU12_09470 PF01618 MotA/TolQ/ExbB proton channel family ACU12_09480 PF00005 ABC transporter ACU12_09480 PF00664 ABC transporter transmembrane region ACU12_09485 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACU12_09490 PF02348 Cytidylyltransferase ACU12_09495 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACU12_09505 PF02151 UvrB/uvrC motif ACU12_09505 PF01541 GIY-YIG catalytic domain ACU12_09505 PF08459 UvrC Helix-hairpin-helix N-terminal ACU12_09510 PF01066 CDP-alcohol phosphatidyltransferase ACU12_09555 PF00975 Thioesterase domain ACU12_09555 PF00501 AMP-binding enzyme ACU12_09555 PF13193 AMP-binding enzyme C-terminal domain ACU12_09555 PF00668 Condensation domain ACU12_09555 PF00550 Phosphopantetheine attachment site ACU12_09560 PF01648 4'-phosphopantetheinyl transferase superfamily ACU12_09560 PF17837 4'-phosphopantetheinyl transferase N-terminal domain ACU12_09570 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACU12_09570 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACU12_09570 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACU12_09580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACU12_09595 PF00072 Response regulator receiver domain ACU12_09595 PF00196 Bacterial regulatory proteins, luxR family ACU12_09600 PF10150 Ribonuclease E/G family ACU12_09600 PF12111 Polyribonucleotide phosphorylase C terminal ACU12_09600 PF00575 S1 RNA binding domain ACU12_09605 PF01479 S4 domain ACU12_09605 PF00849 RNA pseudouridylate synthase ACU12_09625 PF01329 Pterin 4 alpha carbinolamine dehydratase ACU12_09630 PF01106 NifU-like domain ACU12_09640 PF01527 Transposase ACU12_09650 PF05598 Transposase domain (DUF772) ACU12_09675 PF16671 Actin cross-linking domain ACU12_09675 PF04717 Type VI secretion system, phage-baseplate injector ACU12_09690 PF05638 Type VI secretion system effector, Hcp ACU12_09715 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_09715 PF07724 AAA domain (Cdc48 subfamily) ACU12_09715 PF17871 AAA lid domain ACU12_09715 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_09725 PF01609 Transposase DDE domain ACU12_09725 PF05598 Transposase domain (DUF772) ACU12_09735 PF16671 Actin cross-linking domain ACU12_09735 PF04717 Type VI secretion system, phage-baseplate injector ACU12_09775 PF00069 Protein kinase domain ACU12_09790 PF03466 LysR substrate binding domain ACU12_09790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_09795 PF00512 His Kinase A (phospho-acceptor) domain ACU12_09800 PF03150 Di-haem cytochrome c peroxidase ACU12_09800 PF00034 Cytochrome c ACU12_09805 PF00072 Response regulator receiver domain ACU12_09805 PF00486 Transcriptional regulatory protein, C terminal ACU12_09825 PF13276 HTH-like domain ACU12_09830 PF01527 Transposase ACU12_09860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_09860 PF00529 HlyD membrane-fusion protein of T1SS ACU12_09865 PF00873 AcrB/AcrD/AcrF family ACU12_09940 PF03171 2OG-Fe(II) oxygenase superfamily ACU12_09940 PF14226 non-haem dioxygenase in morphine synthesis N-terminal ACU12_09955 PF01609 Transposase DDE domain ACU12_09955 PF05598 Transposase domain (DUF772) ACU12_09965 PF00665 Integrase core domain ACU12_09965 PF13936 Helix-turn-helix domain ACU12_09980 PF05598 Transposase domain (DUF772) ACU12_10000 PF03377 TAL effector repeat ACU12_10025 PF13276 HTH-like domain ACU12_10025 PF13683 Integrase core domain ACU12_10030 PF01527 Transposase ACU12_10035 PF03377 TAL effector repeat ACU12_10050 PF01609 Transposase DDE domain ACU12_10050 PF05598 Transposase domain (DUF772) ACU12_10055 PF03797 Autotransporter beta-domain ACU12_10055 PF00082 Subtilase family ACU12_10060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_10065 PF00873 AcrB/AcrD/AcrF family ACU12_10070 PF02321 Outer membrane efflux protein ACU12_10075 PF00072 Response regulator receiver domain ACU12_10075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10075 PF08448 PAS fold ACU12_10075 PF00512 His Kinase A (phospho-acceptor) domain ACU12_10075 PF13426 PAS domain ACU12_10080 PF00072 Response regulator receiver domain ACU12_10080 PF00196 Bacterial regulatory proteins, luxR family ACU12_10085 PF12951 Passenger-associated-transport-repeat ACU12_10095 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10095 PF08448 PAS fold ACU12_10095 PF00563 EAL domain ACU12_10095 PF08447 PAS fold ACU12_10140 PF10414 Sirohaem synthase dimerisation region ACU12_10140 PF14824 Sirohaem biosynthesis protein central ACU12_10140 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACU12_10165 PF12804 MobA-like NTP transferase domain ACU12_10170 PF00994 Probable molybdopterin binding domain ACU12_10170 PF03453 MoeA N-terminal region (domain I and II) ACU12_10170 PF03454 MoeA C-terminal region (domain IV) ACU12_10205 PF00899 ThiF family ACU12_10215 PF03454 MoeA C-terminal region (domain IV) ACU12_10215 PF00994 Probable molybdopterin binding domain ACU12_10215 PF03453 MoeA N-terminal region (domain I and II) ACU12_10220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACU12_10220 PF01926 50S ribosome-binding GTPase ACU12_10225 PF01011 PQQ enzyme repeat ACU12_10225 PF13360 PQQ-like domain ACU12_10235 PF13464 Domain of unknown function (DUF4115) ACU12_10245 PF04055 Radical SAM superfamily ACU12_10250 PF00334 Nucleoside diphosphate kinase ACU12_10260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACU12_10260 PF00378 Enoyl-CoA hydratase/isomerase ACU12_10260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACU12_10265 PF00108 Thiolase, N-terminal domain ACU12_10265 PF02803 Thiolase, C-terminal domain ACU12_10270 PF00654 Voltage gated chloride channel ACU12_10280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACU12_10290 PF16193 AAA C-terminal domain ACU12_10290 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_10290 PF12002 MgsA AAA+ ATPase C terminal ACU12_10300 PF03548 Outer membrane lipoprotein carrier protein LolA ACU12_10310 PF17854 FtsK alpha domain ACU12_10310 PF09397 Ftsk gamma domain ACU12_10310 PF01580 FtsK/SpoIIIE family ACU12_10310 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACU12_10315 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_10335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACU12_10340 PF01176 Translation initiation factor 1A / IF-1 ACU12_10345 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_10345 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_10345 PF07724 AAA domain (Cdc48 subfamily) ACU12_10345 PF17871 AAA lid domain ACU12_10345 PF02861 Clp amino terminal domain, pathogenicity island component ACU12_10350 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACU12_10355 PF00293 NUDIX domain ACU12_10365 PF04356 Protein of unknown function (DUF489) ACU12_10370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10370 PF00672 HAMP domain ACU12_10370 PF12729 Four helix bundle sensory module for signal transduction ACU12_10385 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10385 PF03707 Bacterial signalling protein N terminal repeat ACU12_10385 PF00563 EAL domain ACU12_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10390 PF07730 Histidine kinase ACU12_10395 PF00563 EAL domain ACU12_10395 PF03707 Bacterial signalling protein N terminal repeat ACU12_10395 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10400 PF00512 His Kinase A (phospho-acceptor) domain ACU12_10420 PF00072 Response regulator receiver domain ACU12_10420 PF01584 CheW-like domain ACU12_10430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACU12_10430 PF00460 Flagella basal body rod protein ACU12_10435 PF03963 Flagellar hook capping protein - N-terminal region ACU12_10440 PF07559 Flagellar basal body protein FlaE ACU12_10440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACU12_10440 PF00460 Flagella basal body rod protein ACU12_10445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACU12_10445 PF00460 Flagella basal body rod protein ACU12_10450 PF00460 Flagella basal body rod protein ACU12_10450 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACU12_10455 PF02107 Flagellar L-ring protein ACU12_10460 PF02119 Flagellar P-ring protein ACU12_10465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ACU12_10465 PF10135 Rod binding protein ACU12_10470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ACU12_10470 PF07196 Flagellin hook IN motif ACU12_10480 PF00700 Bacterial flagellin C-terminal helical region ACU12_10480 PF00669 Bacterial flagellin N-terminal helical region ACU12_10485 PF02465 Flagellar hook-associated protein 2 N-terminus ACU12_10485 PF07196 Flagellin hook IN motif ACU12_10485 PF07195 Flagellar hook-associated protein 2 C-terminus ACU12_10490 PF02561 Flagellar protein FliS ACU12_10505 PF00072 Response regulator receiver domain ACU12_10505 PF00196 Bacterial regulatory proteins, luxR family ACU12_10510 PF04552 Sigma-54, DNA binding domain ACU12_10510 PF00309 Sigma-54 factor, Activator interacting domain (AID) ACU12_10510 PF04963 Sigma-54 factor, core binding domain ACU12_10515 PF00072 Response regulator receiver domain ACU12_10515 PF01339 CheB methylesterase ACU12_10520 PF00072 Response regulator receiver domain ACU12_10520 PF00158 Sigma-54 interaction domain ACU12_10520 PF02954 Bacterial regulatory protein, Fis family ACU12_10525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACU12_10535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACU12_10535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACU12_10540 PF00106 short chain dehydrogenase ACU12_10570 PF00535 Glycosyl transferase family 2 ACU12_10570 PF00534 Glycosyl transferases group 1 ACU12_10575 PF02049 Flagellar hook-basal body complex protein FliE ACU12_10580 PF08345 Flagellar M-ring protein C-terminal ACU12_10580 PF01514 Secretory protein of YscJ/FliF family ACU12_10585 PF01706 FliG C-terminal domain ACU12_10585 PF14841 FliG middle domain ACU12_10585 PF14842 FliG N-terminal domain ACU12_10595 PF18269 T3SS EscN ATPase C-terminal domain ACU12_10595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACU12_10615 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACU12_10615 PF02154 Flagellar motor switch protein FliM ACU12_10620 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ACU12_10625 PF04347 Flagellar biosynthesis protein, FliO ACU12_10630 PF00813 FliP family ACU12_10635 PF01313 Bacterial export proteins, family 3 ACU12_10640 PF01311 Bacterial export proteins, family 1 ACU12_10645 PF00563 EAL domain ACU12_10645 PF13188 PAS domain ACU12_10645 PF03707 Bacterial signalling protein N terminal repeat ACU12_10645 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10650 PF03707 Bacterial signalling protein N terminal repeat ACU12_10650 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10650 PF00563 EAL domain ACU12_10650 PF13188 PAS domain ACU12_10655 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10655 PF00563 EAL domain ACU12_10655 PF03707 Bacterial signalling protein N terminal repeat ACU12_10660 PF01312 FlhB HrpN YscU SpaS Family ACU12_10665 PF00771 FHIPEP family ACU12_10670 PF00448 SRP54-type protein, GTPase domain ACU12_10675 PF10609 NUBPL iron-transfer P-loop NTPase ACU12_10680 PF04542 Sigma-70 region 2 ACU12_10680 PF04545 Sigma-70, region 4 ACU12_10680 PF04539 Sigma-70 region 3 ACU12_10685 PF00072 Response regulator receiver domain ACU12_10690 PF04344 Chemotaxis phosphatase, CheZ ACU12_10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10695 PF01627 Hpt domain ACU12_10695 PF07194 P2 response regulator binding domain ACU12_10695 PF02895 Signal transducing histidine kinase, homodimeric domain ACU12_10695 PF01584 CheW-like domain ACU12_10745 PF07715 TonB-dependent Receptor Plug Domain ACU12_10745 PF00593 TonB dependent receptor ACU12_10750 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACU12_10750 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACU12_10770 PF01618 MotA/TolQ/ExbB proton channel family ACU12_10775 PF00691 OmpA family ACU12_10775 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACU12_10780 PF13614 AAA domain ACU12_10785 PF01584 CheW-like domain ACU12_10795 PF00072 Response regulator receiver domain ACU12_10800 PF09078 CheY binding ACU12_10800 PF01584 CheW-like domain ACU12_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10800 PF01627 Hpt domain ACU12_10800 PF02895 Signal transducing histidine kinase, homodimeric domain ACU12_10805 PF00672 HAMP domain ACU12_10805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10805 PF02203 Tar ligand binding domain homologue ACU12_10815 PF00672 HAMP domain ACU12_10815 PF02203 Tar ligand binding domain homologue ACU12_10815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10820 PF00672 HAMP domain ACU12_10820 PF02203 Tar ligand binding domain homologue ACU12_10830 PF00672 HAMP domain ACU12_10830 PF02203 Tar ligand binding domain homologue ACU12_10830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10835 PF02203 Tar ligand binding domain homologue ACU12_10835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10835 PF00672 HAMP domain ACU12_10840 PF02203 Tar ligand binding domain homologue ACU12_10840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10840 PF00672 HAMP domain ACU12_10845 PF00672 HAMP domain ACU12_10845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10845 PF02203 Tar ligand binding domain homologue ACU12_10850 PF02203 Tar ligand binding domain homologue ACU12_10850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10850 PF00672 HAMP domain ACU12_10855 PF00672 HAMP domain ACU12_10855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10855 PF02203 Tar ligand binding domain homologue ACU12_10860 PF02203 Tar ligand binding domain homologue ACU12_10860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10860 PF00672 HAMP domain ACU12_10865 PF02203 Tar ligand binding domain homologue ACU12_10865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10865 PF00672 HAMP domain ACU12_10870 PF07238 PilZ domain ACU12_10870 PF07317 Flagellar regulator YcgR ACU12_10875 PF01584 CheW-like domain ACU12_10885 PF00672 HAMP domain ACU12_10885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_10885 PF02203 Tar ligand binding domain homologue ACU12_10890 PF01739 CheR methyltransferase, SAM binding domain ACU12_10890 PF03705 CheR methyltransferase, all-alpha domain ACU12_10895 PF03975 CheD chemotactic sensory transduction ACU12_10900 PF01339 CheB methylesterase ACU12_10900 PF00072 Response regulator receiver domain ACU12_10905 PF00563 EAL domain ACU12_10905 PF03707 Bacterial signalling protein N terminal repeat ACU12_10905 PF00990 Diguanylate cyclase, GGDEF domain ACU12_10910 PF00561 alpha/beta hydrolase fold ACU12_10915 PF00330 Aconitase family (aconitate hydratase) ACU12_10915 PF06434 Aconitate hydratase 2 N-terminus ACU12_10915 PF11791 Aconitate B N-terminal domain ACU12_10930 PF00330 Aconitase family (aconitate hydratase) ACU12_10930 PF00694 Aconitase C-terminal domain ACU12_10940 PF00501 AMP-binding enzyme ACU12_10940 PF13193 AMP-binding enzyme C-terminal domain ACU12_10945 PF00378 Enoyl-CoA hydratase/isomerase ACU12_10950 PF00512 His Kinase A (phospho-acceptor) domain ACU12_10950 PF00072 Response regulator receiver domain ACU12_10950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_10950 PF01627 Hpt domain ACU12_10955 PF00072 Response regulator receiver domain ACU12_10960 PF01336 OB-fold nucleic acid binding domain ACU12_10960 PF00152 tRNA synthetases class II (D, K and N) ACU12_10965 PF00472 RF-1 domain ACU12_10965 PF03462 PCRF domain ACU12_10985 PF01368 DHH family ACU12_10985 PF17768 RecJ OB domain ACU12_10985 PF02272 DHHA1 domain ACU12_10995 PF01272 Transcription elongation factor, GreA/GreB, C-term ACU12_10995 PF03449 Transcription elongation factor, N-terminal ACU12_11000 PF02142 MGS-like domain ACU12_11000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACU12_11000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACU12_11010 PF00117 Glutamine amidotransferase class-I ACU12_11010 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACU12_11015 PF01113 Dihydrodipicolinate reductase, N-terminus ACU12_11015 PF05173 Dihydrodipicolinate reductase, C-terminus ACU12_11020 PF03475 3-alpha domain ACU12_11020 PF03473 MOSC domain ACU12_11025 PF00155 Aminotransferase class I and II ACU12_11045 PF07664 Ferrous iron transport protein B C terminus ACU12_11045 PF07670 Nucleoside recognition ACU12_11045 PF02421 Ferrous iron transport protein B ACU12_11055 PF00378 Enoyl-CoA hydratase/isomerase ACU12_11065 PF00682 HMGL-like ACU12_11070 PF00106 short chain dehydrogenase ACU12_11075 PF01132 Elongation factor P (EF-P) OB domain ACU12_11075 PF08207 Elongation factor P (EF-P) KOW-like domain ACU12_11075 PF09285 Elongation factor P, C-terminal ACU12_11100 PF01565 FAD binding domain ACU12_11100 PF02913 FAD linked oxidases, C-terminal domain ACU12_11105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACU12_11105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACU12_11115 PF13520 Amino acid permease ACU12_11120 PF13520 Amino acid permease ACU12_11125 PF00596 Class II Aldolase and Adducin N-terminal domain ACU12_11130 PF03079 ARD/ARD' family ACU12_11155 PF01502 Phosphoribosyl-AMP cyclohydrolase ACU12_11155 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACU12_11160 PF00977 Histidine biosynthesis protein ACU12_11165 PF00977 Histidine biosynthesis protein ACU12_11170 PF00117 Glutamine amidotransferase class-I ACU12_11175 PF00475 Imidazoleglycerol-phosphate dehydratase ACU12_11180 PF00155 Aminotransferase class I and II ACU12_11185 PF00815 Histidinol dehydrogenase ACU12_11190 PF08029 HisG, C-terminal domain ACU12_11190 PF01634 ATP phosphoribosyltransferase ACU12_11200 PF13393 Histidyl-tRNA synthetase ACU12_11200 PF03129 Anticodon binding domain ACU12_11215 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_11215 PF14821 Threonine synthase N terminus ACU12_11230 PF01527 Transposase ACU12_11235 PF13276 HTH-like domain ACU12_11235 PF13683 Integrase core domain ACU12_11255 PF01527 Transposase ACU12_11260 PF08544 GHMP kinases C terminal ACU12_11260 PF00288 GHMP kinases N terminal domain ACU12_11265 PF00696 Amino acid kinase family ACU12_11265 PF13840 ACT domain ACU12_11265 PF01842 ACT domain ACU12_11265 PF00742 Homoserine dehydrogenase ACU12_11265 PF03447 Homoserine dehydrogenase, NAD binding domain ACU12_11270 PF03073 TspO/MBR family ACU12_11280 PF00171 Aldehyde dehydrogenase family ACU12_11295 PF01180 Dihydroorotate dehydrogenase ACU12_11300 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACU12_11300 PF01565 FAD binding domain ACU12_11305 PF00892 EamA-like transporter family ACU12_11310 PF07690 Major Facilitator Superfamily ACU12_11315 PF01569 PAP2 superfamily ACU12_11320 PF04551 GcpE protein ACU12_11330 PF00072 Response regulator receiver domain ACU12_11335 PF00150 Cellulase (glycosyl hydrolase family 5) ACU12_11335 PF02013 Cellulose or protein binding domain ACU12_11340 PF01590 GAF domain ACU12_11340 PF00563 EAL domain ACU12_11340 PF00360 Phytochrome region ACU12_11340 PF00990 Diguanylate cyclase, GGDEF domain ACU12_11345 PF00474 Sodium:solute symporter family ACU12_11350 PF14310 Fibronectin type III-like domain ACU12_11350 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACU12_11350 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_11370 PF00342 Phosphoglucose isomerase ACU12_11375 PF02261 Aspartate decarboxylase ACU12_11380 PF02569 Pantoate-beta-alanine ligase ACU12_11385 PF02548 Ketopantoate hydroxymethyltransferase ACU12_11390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACU12_11395 PF12626 Polymerase A arginine-rich C-terminus ACU12_11395 PF12627 Probable RNA and SrmB- binding site of polymerase A ACU12_11395 PF01743 Poly A polymerase head domain ACU12_11405 PF02649 Type I GTP cyclohydrolase folE2 ACU12_11410 PF01520 N-acetylmuramoyl-L-alanine amidase ACU12_11415 PF00083 Sugar (and other) transporter ACU12_11425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACU12_11425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACU12_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_11445 PF03466 LysR substrate binding domain ACU12_11450 PF01081 KDPG and KHG aldolase ACU12_11455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACU12_11455 PF13378 Enolase C-terminal domain-like ACU12_11460 PF08450 SMP-30/Gluconolactonase/LRE-like region ACU12_11465 PF05035 2-keto-3-deoxy-galactonokinase ACU12_11470 PF11953 Domain of unknown function (DUF3470) ACU12_11470 PF00037 4Fe-4S binding domain ACU12_11480 PF00701 Dihydrodipicolinate synthetase family ACU12_11495 PF00578 AhpC/TSA family ACU12_11500 PF02562 PhoH-like protein ACU12_11500 PF13638 PIN domain ACU12_11510 PF02581 Thiamine monophosphate synthase ACU12_11510 PF08543 Phosphomethylpyrimidine kinase ACU12_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_11535 PF03466 LysR substrate binding domain ACU12_11540 PF02678 Pirin ACU12_11540 PF17954 Quercetinase C-terminal cupin domain ACU12_11555 PF01527 Transposase ACU12_11560 PF00665 Integrase core domain ACU12_11560 PF13333 Integrase core domain ACU12_11560 PF13276 HTH-like domain ACU12_11565 PF00295 Glycosyl hydrolases family 28 ACU12_11575 PF13419 Haloacid dehalogenase-like hydrolase ACU12_11585 PF01979 Amidohydrolase family ACU12_11595 PF08207 Elongation factor P (EF-P) KOW-like domain ACU12_11595 PF09285 Elongation factor P, C-terminal ACU12_11595 PF01132 Elongation factor P (EF-P) OB domain ACU12_11600 PF04055 Radical SAM superfamily ACU12_11605 PF00563 EAL domain ACU12_11605 PF13188 PAS domain ACU12_11605 PF03707 Bacterial signalling protein N terminal repeat ACU12_11605 PF00990 Diguanylate cyclase, GGDEF domain ACU12_11615 PF00588 SpoU rRNA Methylase family ACU12_11620 PF00459 Inositol monophosphatase family ACU12_11625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACU12_11625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACU12_11630 PF00545 ribonuclease ACU12_11650 PF00271 Helicase conserved C-terminal domain ACU12_11650 PF00270 DEAD/DEAH box helicase ACU12_11650 PF03880 DbpA RNA binding domain ACU12_11655 PF00156 Phosphoribosyl transferase domain ACU12_11660 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACU12_11670 PF14497 Glutathione S-transferase, C-terminal domain ACU12_11670 PF02798 Glutathione S-transferase, N-terminal domain ACU12_11675 PF00313 'Cold-shock' DNA-binding domain ACU12_11680 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ACU12_11685 PF07152 YaeQ protein ACU12_11695 PF00072 Response regulator receiver domain ACU12_11695 PF00990 Diguanylate cyclase, GGDEF domain ACU12_11695 PF00563 EAL domain ACU12_11700 PF01435 Peptidase family M48 ACU12_11705 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACU12_11710 PF00106 short chain dehydrogenase ACU12_11715 PF07879 PHB/PHA accumulation regulator DNA-binding domain ACU12_11715 PF05233 PHB accumulation regulatory domain ACU12_11730 PF01119 DNA mismatch repair protein, C-terminal domain ACU12_11730 PF08676 MutL C terminal dimerisation domain ACU12_11740 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACU12_11745 PF03853 YjeF-related protein N-terminus ACU12_11745 PF01256 Carbohydrate kinase ACU12_11750 PF08331 Domain of unknown function (DUF1730) ACU12_11755 PF13742 OB-fold nucleic acid binding domain ACU12_11755 PF02601 Exonuclease VII, large subunit ACU12_11765 PF03781 Sulfatase-modifying factor enzyme 1 ACU12_11770 PF01612 3'-5' exonuclease ACU12_11770 PF00570 HRDC domain ACU12_11820 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_11875 PF03328 HpcH/HpaI aldolase/citrate lyase family ACU12_11930 PF01584 CheW-like domain ACU12_11935 PF02743 Cache domain ACU12_11935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_11935 PF00672 HAMP domain ACU12_11955 PF04386 Stringent starvation protein B ACU12_11960 PF00043 Glutathione S-transferase, C-terminal domain ACU12_11960 PF02798 Glutathione S-transferase, N-terminal domain ACU12_11965 PF02167 Cytochrome C1 family ACU12_11970 PF00032 Cytochrome b(C-terminal)/b6/petD ACU12_11970 PF00033 Cytochrome b/b6/petB ACU12_11975 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ACU12_11975 PF00355 Rieske [2Fe-2S] domain ACU12_11980 PF01464 Transglycosylase SLT domain ACU12_11995 PF01938 TRAM domain ACU12_11995 PF00919 Uncharacterized protein family UPF0004 ACU12_11995 PF04055 Radical SAM superfamily ACU12_12000 PF02562 PhoH-like protein ACU12_12010 PF02130 Uncharacterized protein family UPF0054 ACU12_12020 PF03471 Transporter associated domain ACU12_12020 PF00571 CBS domain ACU12_12035 PF00171 Aldehyde dehydrogenase family ACU12_12040 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_12045 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_12050 PF00005 ABC transporter ACU12_12050 PF08402 TOBE domain ACU12_12055 PF02321 Outer membrane efflux protein ACU12_12060 PF07690 Major Facilitator Superfamily ACU12_12065 PF13533 Biotin-lipoyl like ACU12_12070 PF13416 Bacterial extracellular solute-binding protein ACU12_12075 PF00202 Aminotransferase class-III ACU12_12085 PF16671 Actin cross-linking domain ACU12_12085 PF04717 Type VI secretion system, phage-baseplate injector ACU12_12090 PF03377 TAL effector repeat ACU12_12095 PF03377 TAL effector repeat ACU12_12100 PF03377 TAL effector repeat ACU12_12105 PF13276 HTH-like domain ACU12_12105 PF13683 Integrase core domain ACU12_12110 PF04717 Type VI secretion system, phage-baseplate injector ACU12_12110 PF16671 Actin cross-linking domain ACU12_12140 PF00120 Glutamine synthetase, catalytic domain ACU12_12145 PF07722 Peptidase C26 ACU12_12150 PF00120 Glutamine synthetase, catalytic domain ACU12_12155 PF01266 FAD dependent oxidoreductase ACU12_12160 PF00990 Diguanylate cyclase, GGDEF domain ACU12_12160 PF00072 Response regulator receiver domain ACU12_12165 PF00083 Sugar (and other) transporter ACU12_12165 PF07690 Major Facilitator Superfamily ACU12_12170 PF00384 Molybdopterin oxidoreductase ACU12_12175 PF02634 FdhD/NarQ family ACU12_12185 PF00202 Aminotransferase class-III ACU12_12190 PF00005 ABC transporter ACU12_12200 PF04286 Protein of unknown function (DUF445) ACU12_12205 PF00512 His Kinase A (phospho-acceptor) domain ACU12_12205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_12205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ACU12_12205 PF01627 Hpt domain ACU12_12205 PF00072 Response regulator receiver domain ACU12_12205 PF00672 HAMP domain ACU12_12210 PF00072 Response regulator receiver domain ACU12_12225 PF05088 Bacterial NAD-glutamate dehydrogenase ACU12_12235 PF00529 HlyD membrane-fusion protein of T1SS ACU12_12235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_12240 PF00873 AcrB/AcrD/AcrF family ACU12_12245 PF01609 Transposase DDE domain ACU12_12245 PF13006 Insertion element 4 transposase N-terminal ACU12_12250 PF00356 Bacterial regulatory proteins, lacI family ACU12_12255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACU12_12255 PF02896 PEP-utilising enzyme, TIM barrel domain ACU12_12255 PF00391 PEP-utilising enzyme, mobile domain ACU12_12255 PF05524 PEP-utilising enzyme, N-terminal ACU12_12255 PF00381 PTS HPr component phosphorylation site ACU12_12260 PF00294 pfkB family carbohydrate kinase ACU12_12265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACU12_12275 PF05598 Transposase domain (DUF772) ACU12_12275 PF01609 Transposase DDE domain ACU12_12280 PF01593 Flavin containing amine oxidoreductase ACU12_12300 PF13683 Integrase core domain ACU12_12300 PF13276 HTH-like domain ACU12_12320 PF02355 Protein export membrane protein ACU12_12320 PF07549 SecD/SecF GG Motif ACU12_12325 PF07549 SecD/SecF GG Motif ACU12_12325 PF02355 Protein export membrane protein ACU12_12325 PF13721 SecD export protein N-terminal TM region ACU12_12330 PF02699 Preprotein translocase subunit ACU12_12335 PF01702 Queuine tRNA-ribosyltransferase ACU12_12340 PF02547 Queuosine biosynthesis protein ACU12_12395 PF00037 4Fe-4S binding domain ACU12_12410 PF01467 Cytidylyltransferase-like ACU12_12420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_12420 PF00183 Hsp90 protein ACU12_12430 PF05598 Transposase domain (DUF772) ACU12_12440 PF05598 Transposase domain (DUF772) ACU12_12465 PF00326 Prolyl oligopeptidase family ACU12_12465 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ACU12_12470 PF04616 Glycosyl hydrolases family 43 ACU12_12475 PF07532 Bacterial Ig-like domain (group 4) ACU12_12480 PF00593 TonB dependent receptor ACU12_12480 PF07715 TonB-dependent Receptor Plug Domain ACU12_12490 PF09286 Pro-kumamolisin, activation domain ACU12_12490 PF00082 Subtilase family ACU12_12530 PF13520 Amino acid permease ACU12_12545 PF00557 Metallopeptidase family M24 ACU12_12545 PF01321 Creatinase/Prolidase N-terminal domain ACU12_12550 PF00171 Aldehyde dehydrogenase family ACU12_12555 PF00701 Dihydrodipicolinate synthetase family ACU12_12560 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_12560 PF04324 BFD-like [2Fe-2S] binding domain ACU12_12570 PF01266 FAD dependent oxidoreductase ACU12_12575 PF05544 Proline racemase ACU12_12585 PF00448 SRP54-type protein, GTPase domain ACU12_12585 PF02881 SRP54-type protein, helical bundle domain ACU12_12595 PF14815 NUDIX domain ACU12_12595 PF00730 HhH-GPD superfamily base excision DNA repair protein ACU12_12595 PF00633 Helix-hairpin-helix motif ACU12_12595 PF10576 Iron-sulfur binding domain of endonuclease III ACU12_12600 PF04362 Bacterial Fe(2+) trafficking ACU12_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_12605 PF13426 PAS domain ACU12_12605 PF00072 Response regulator receiver domain ACU12_12635 PF08212 Lipocalin-like domain ACU12_12645 PF02770 Acyl-CoA dehydrogenase, middle domain ACU12_12645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_12645 PF12806 Acetyl-CoA dehydrogenase C-terminal like ACU12_12645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_12655 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACU12_12655 PF02780 Transketolase, C-terminal domain ACU12_12655 PF02779 Transketolase, pyrimidine binding domain ACU12_12675 PF03808 Glycosyl transferase WecB/TagA/CpsF family ACU12_12690 PF14667 Polysaccharide biosynthesis C-terminal domain ACU12_12700 PF00534 Glycosyl transferases group 1 ACU12_12700 PF13439 Glycosyltransferase Family 4 ACU12_12720 PF02397 Bacterial sugar transferase ACU12_12740 PF13411 MerR HTH family regulatory protein ACU12_12745 PF00216 Bacterial DNA-binding protein ACU12_12750 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACU12_12750 PF01588 Putative tRNA binding domain ACU12_12750 PF03484 tRNA synthetase B5 domain ACU12_12750 PF03147 Ferredoxin-fold anticodon binding domain ACU12_12750 PF03483 B3/4 domain ACU12_12755 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACU12_12755 PF01409 tRNA synthetases class II core domain (F) ACU12_12760 PF00453 Ribosomal protein L20 ACU12_12765 PF01632 Ribosomal protein L35 ACU12_12770 PF05198 Translation initiation factor IF-3, N-terminal domain ACU12_12770 PF00707 Translation initiation factor IF-3, C-terminal domain ACU12_12775 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACU12_12775 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACU12_12775 PF03129 Anticodon binding domain ACU12_12775 PF02824 TGS domain ACU12_12780 PF01527 Transposase ACU12_12790 PF05598 Transposase domain (DUF772) ACU12_12795 PF05598 Transposase domain (DUF772) ACU12_12805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACU12_12805 PF02403 Seryl-tRNA synthetase N-terminal domain ACU12_12810 PF03544 Gram-negative bacterial TonB protein C-terminal ACU12_12820 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACU12_12825 PF00800 Prephenate dehydratase ACU12_12825 PF01842 ACT domain ACU12_12825 PF01817 Chorismate mutase type II ACU12_12830 PF00266 Aminotransferase class-V ACU12_12835 PF00174 Oxidoreductase molybdopterin binding domain ACU12_12845 PF01794 Ferric reductase like transmembrane component ACU12_12870 PF07702 UTRA domain ACU12_12870 PF00392 Bacterial regulatory proteins, gntR family ACU12_12880 PF07969 Amidohydrolase family ACU12_12885 PF00221 Aromatic amino acid lyase ACU12_12895 PF01175 Urocanase Rossmann-like domain ACU12_12895 PF17392 Urocanase C-terminal domain ACU12_12895 PF17391 Urocanase N-terminal domain ACU12_12915 PF01527 Transposase ACU12_12920 PF13683 Integrase core domain ACU12_12920 PF13276 HTH-like domain ACU12_12930 PF04851 Type III restriction enzyme, res subunit ACU12_12930 PF02151 UvrB/uvrC motif ACU12_12930 PF12344 Ultra-violet resistance protein B ACU12_12930 PF17757 UvrB interaction domain ACU12_12930 PF00271 Helicase conserved C-terminal domain ACU12_12935 PF07963 Prokaryotic N-terminal methylation motif ACU12_12935 PF00114 Pilin (bacterial filament) ACU12_12990 PF01555 DNA methylase ACU12_13045 PF00182 Chitinase class I ACU12_13070 PF05598 Transposase domain (DUF772) ACU12_13140 PF13614 AAA domain ACU12_13220 PF00114 Pilin (bacterial filament) ACU12_13220 PF07963 Prokaryotic N-terminal methylation motif ACU12_13225 PF05567 Neisseria PilC beta-propeller domain ACU12_13245 PF12019 Type II transport protein GspH ACU12_13245 PF07963 Prokaryotic N-terminal methylation motif ACU12_13250 PF03641 Possible lysine decarboxylase ACU12_13250 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ACU12_13250 PF11892 Domain of unknown function (DUF3412) ACU12_13255 PF00593 TonB dependent receptor ACU12_13260 PF01914 MarC family integral membrane protein ACU12_13270 PF00462 Glutaredoxin ACU12_13275 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACU12_13275 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACU12_13280 PF02222 ATP-grasp domain ACU12_13280 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACU12_13285 PF00731 AIR carboxylase ACU12_13295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACU12_13295 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACU12_13305 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACU12_13305 PF01138 3' exoribonuclease family, domain 1 ACU12_13305 PF03725 3' exoribonuclease family, domain 2 ACU12_13305 PF00575 S1 RNA binding domain ACU12_13305 PF00013 KH domain ACU12_13310 PF00312 Ribosomal protein S15 ACU12_13315 PF09157 Pseudouridine synthase II TruB, C-terminal ACU12_13315 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACU12_13315 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACU12_13320 PF02033 Ribosome-binding factor A ACU12_13325 PF11987 Translation-initiation factor 2 ACU12_13325 PF08364 Bacterial translation initiation factor IF-2 associated region ACU12_13325 PF00009 Elongation factor Tu GTP binding domain ACU12_13325 PF04760 Translation initiation factor IF-2, N-terminal region ACU12_13330 PF00575 S1 RNA binding domain ACU12_13330 PF08529 NusA N-terminal domain ACU12_13330 PF13184 NusA-like KH domain ACU12_13335 PF17384 RimP C-terminal SH3 domain ACU12_13335 PF02576 RimP N-terminal domain ACU12_13345 PF00361 Proton-conducting membrane transporter ACU12_13350 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACU12_13350 PF00361 Proton-conducting membrane transporter ACU12_13355 PF00361 Proton-conducting membrane transporter ACU12_13355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACU12_13360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACU12_13365 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACU12_13370 PF12838 4Fe-4S dicluster domain ACU12_13375 PF00146 NADH dehydrogenase ACU12_13380 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACU12_13380 PF00384 Molybdopterin oxidoreductase ACU12_13380 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACU12_13385 PF10531 SLBB domain ACU12_13385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACU12_13385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACU12_13395 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACU12_13400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACU12_13405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACU12_13410 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACU12_13420 PF03840 Preprotein translocase SecG subunit ACU12_13425 PF00121 Triosephosphate isomerase ACU12_13435 PF01609 Transposase DDE domain ACU12_13435 PF05598 Transposase domain (DUF772) ACU12_13450 PF03707 Bacterial signalling protein N terminal repeat ACU12_13450 PF00990 Diguanylate cyclase, GGDEF domain ACU12_13450 PF00563 EAL domain ACU12_13465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACU12_13465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACU12_13465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACU12_13465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACU12_13470 PF01039 Carboxyl transferase domain ACU12_13470 PF17848 Acetyl-coA carboxylase zinc finger domain ACU12_13475 PF00290 Tryptophan synthase alpha chain ACU12_13485 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_13490 PF03466 LysR substrate binding domain ACU12_13490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_13495 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACU12_13500 PF01416 tRNA pseudouridine synthase ACU12_13515 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACU12_13515 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACU12_13520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACU12_13520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACU12_13525 PF01264 Chorismate synthase ACU12_13530 PF05175 Methyltransferase small domain ACU12_13535 PF02630 SCO1/SenC ACU12_13540 PF02666 Phosphatidylserine decarboxylase ACU12_13550 PF05872 Bacterial protein of unknown function (DUF853) ACU12_13565 PF13683 Integrase core domain ACU12_13565 PF13276 HTH-like domain ACU12_13580 PF03449 Transcription elongation factor, N-terminal ACU12_13580 PF01272 Transcription elongation factor, GreA/GreB, C-term ACU12_13590 PF18693 TRAM domain ACU12_13590 PF04055 Radical SAM superfamily ACU12_13590 PF00919 Uncharacterized protein family UPF0004 ACU12_13595 PF01738 Dienelactone hydrolase family ACU12_13615 PF00692 dUTPase ACU12_13620 PF10609 NUBPL iron-transfer P-loop NTPase ACU12_13625 PF13340 Putative transposase of IS4/5 family (DUF4096) ACU12_13635 PF00990 Diguanylate cyclase, GGDEF domain ACU12_13645 PF00990 Diguanylate cyclase, GGDEF domain ACU12_13645 PF08448 PAS fold ACU12_13650 PF05598 Transposase domain (DUF772) ACU12_13650 PF01609 Transposase DDE domain ACU12_13665 PF05736 OprF membrane domain ACU12_13665 PF00691 OmpA family ACU12_13675 PF03441 FAD binding domain of DNA photolyase ACU12_13675 PF00875 DNA photolyase ACU12_13680 PF03796 DnaB-like helicase C terminal domain ACU12_13680 PF00772 DnaB-like helicase N terminal domain ACU12_13685 PF03358 NADPH-dependent FMN reductase ACU12_13690 PF13537 Glutamine amidotransferase domain ACU12_13690 PF00733 Asparagine synthase ACU12_13695 PF02798 Glutathione S-transferase, N-terminal domain ACU12_13695 PF00043 Glutathione S-transferase, C-terminal domain ACU12_13705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_13705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_13705 PF02770 Acyl-CoA dehydrogenase, middle domain ACU12_13720 PF01026 TatD related DNase ACU12_13725 PF00899 ThiF family ACU12_13740 PF00313 'Cold-shock' DNA-binding domain ACU12_13755 PF02253 Phospholipase A1 ACU12_13765 PF05681 Fumarate hydratase (Fumerase) ACU12_13765 PF05683 Fumarase C-terminus ACU12_13770 PF00005 ABC transporter ACU12_13775 PF00175 Oxidoreductase NAD-binding domain ACU12_13775 PF00970 Oxidoreductase FAD-binding domain ACU12_13780 PF00255 Glutathione peroxidase ACU12_13800 PF00082 Subtilase family ACU12_13820 PF12802 MarR family ACU12_13845 PF00854 POT family ACU12_13855 PF14310 Fibronectin type III-like domain ACU12_13855 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_13855 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACU12_13875 PF07690 Major Facilitator Superfamily ACU12_13880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_13880 PF00529 HlyD membrane-fusion protein of T1SS ACU12_13885 PF02321 Outer membrane efflux protein ACU12_13895 PF12833 Helix-turn-helix domain ACU12_13900 PF00521 DNA gyrase/topoisomerase IV, subunit A ACU12_13900 PF03989 DNA gyrase C-terminal domain, beta-propeller ACU12_13905 PF00210 Ferritin-like domain ACU12_13910 PF01804 Penicillin amidase ACU12_13915 PF00593 TonB dependent receptor ACU12_13915 PF07715 TonB-dependent Receptor Plug Domain ACU12_13925 PF00733 Asparagine synthase ACU12_13925 PF13537 Glutamine amidotransferase domain ACU12_13930 PF01546 Peptidase family M20/M25/M40 ACU12_13930 PF07687 Peptidase dimerisation domain ACU12_13940 PF03960 ArsC family ACU12_13950 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_13950 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACU12_13950 PF14602 Hexapeptide repeat of succinyl-transferase ACU12_13955 PF08335 GlnD PII-uridylyltransferase ACU12_13955 PF01909 Nucleotidyltransferase domain ACU12_13955 PF01966 HD domain ACU12_13960 PF00557 Metallopeptidase family M24 ACU12_13995 PF00318 Ribosomal protein S2 ACU12_14000 PF00889 Elongation factor TS ACU12_14005 PF00072 Response regulator receiver domain ACU12_14005 PF00990 Diguanylate cyclase, GGDEF domain ACU12_14010 PF00696 Amino acid kinase family ACU12_14015 PF01765 Ribosome recycling factor ACU12_14020 PF01255 Putative undecaprenyl diphosphate synthase ACU12_14030 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACU12_14030 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACU12_14030 PF13288 DXP reductoisomerase C-terminal domain ACU12_14035 PF02163 Peptidase family M50 ACU12_14035 PF17820 PDZ domain ACU12_14040 PF07244 Surface antigen variable number repeat ACU12_14040 PF01103 Surface antigen ACU12_14045 PF01609 Transposase DDE domain ACU12_14045 PF05598 Transposase domain (DUF772) ACU12_14050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACU12_14050 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_14055 PF07977 FabA-like domain ACU12_14060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACU12_14060 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_14065 PF02684 Lipid-A-disaccharide synthetase ACU12_14070 PF01351 Ribonuclease HII ACU12_14075 PF01336 OB-fold nucleic acid binding domain ACU12_14075 PF02811 PHP domain ACU12_14075 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACU12_14075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACU12_14075 PF14579 Helix-hairpin-helix motif ACU12_14080 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACU12_14100 PF05598 Transposase domain (DUF772) ACU12_14125 PF03551 Transcriptional regulator PadR-like family ACU12_14135 PF05598 Transposase domain (DUF772) ACU12_14155 PF02592 Putative vitamin uptake transporter ACU12_14165 PF02574 Homocysteine S-methyltransferase ACU12_14170 PF00324 Amino acid permease ACU12_14175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACU12_14185 PF09334 tRNA synthetases class I (M) ACU12_14185 PF01588 Putative tRNA binding domain ACU12_14215 PF04545 Sigma-70, region 4 ACU12_14215 PF04542 Sigma-70 region 2 ACU12_14260 PF01042 Endoribonuclease L-PSP ACU12_14270 PF09924 Uncharacterised conserved protein (DUF2156) ACU12_14270 PF03706 Lysylphosphatidylglycerol synthase TM region ACU12_14300 PF07690 Major Facilitator Superfamily ACU12_14305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACU12_14320 PF08274 PhnA Zinc-Ribbon ACU12_14320 PF03831 PhnA domain ACU12_14330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACU12_14365 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACU12_14375 PF07043 Protein of unknown function (DUF1328) ACU12_14380 PF01863 Protein of unknown function DUF45 ACU12_14385 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACU12_14385 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACU12_14390 PF00082 Subtilase family ACU12_14390 PF03797 Autotransporter beta-domain ACU12_14390 PF12951 Passenger-associated-transport-repeat ACU12_14395 PF00108 Thiolase, N-terminal domain ACU12_14395 PF02803 Thiolase, C-terminal domain ACU12_14425 PF01068 ATP dependent DNA ligase domain ACU12_14425 PF04679 ATP dependent DNA ligase C terminal region ACU12_14425 PF04675 DNA ligase N terminus ACU12_14435 PF04679 ATP dependent DNA ligase C terminal region ACU12_14435 PF04675 DNA ligase N terminus ACU12_14435 PF01068 ATP dependent DNA ligase domain ACU12_14440 PF00270 DEAD/DEAH box helicase ACU12_14440 PF00271 Helicase conserved C-terminal domain ACU12_14440 PF08494 DEAD/H associated ACU12_14455 PF00313 'Cold-shock' DNA-binding domain ACU12_14460 PF01048 Phosphorylase superfamily ACU12_14470 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_14475 PF04244 Deoxyribodipyrimidine photo-lyase-related protein ACU12_14480 PF01593 Flavin containing amine oxidoreductase ACU12_14485 PF01323 DSBA-like thioredoxin domain ACU12_14495 PF05958 tRNA (Uracil-5-)-methyltransferase ACU12_14505 PF02565 Recombination protein O C terminal ACU12_14505 PF11967 Recombination protein O N terminal ACU12_14510 PF01926 50S ribosome-binding GTPase ACU12_14510 PF07650 KH domain ACU12_14515 PF00035 Double-stranded RNA binding motif ACU12_14515 PF14622 Ribonuclease-III-like ACU12_14525 PF10502 Signal peptidase, peptidase S26 ACU12_14530 PF00009 Elongation factor Tu GTP binding domain ACU12_14530 PF03144 Elongation factor Tu domain 2 ACU12_14530 PF06421 GTP-binding protein LepA C-terminus ACU12_14530 PF00679 Elongation factor G C-terminus ACU12_14535 PF13180 PDZ domain ACU12_14545 PF08281 Sigma-70, region 4 ACU12_14545 PF04542 Sigma-70 region 2 ACU12_14550 PF00378 Enoyl-CoA hydratase/isomerase ACU12_14550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACU12_14550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACU12_14555 PF01545 Cation efflux family ACU12_14560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACU12_14560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACU12_14565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACU12_14565 PF00378 Enoyl-CoA hydratase/isomerase ACU12_14565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACU12_14570 PF00378 Enoyl-CoA hydratase/isomerase ACU12_14575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_14575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_14575 PF02770 Acyl-CoA dehydrogenase, middle domain ACU12_14580 PF00171 Aldehyde dehydrogenase family ACU12_14585 PF01381 Helix-turn-helix ACU12_14585 PF06114 IrrE N-terminal-like domain ACU12_14585 PF09856 Predicted transcriptional regulator (DUF2083) ACU12_14625 PF00672 HAMP domain ACU12_14625 PF17149 Periplasmic sensor domain found in signal transduction proteins ACU12_14625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_14625 PF00512 His Kinase A (phospho-acceptor) domain ACU12_14625 PF01627 Hpt domain ACU12_14625 PF00072 Response regulator receiver domain ACU12_14630 PF00072 Response regulator receiver domain ACU12_14630 PF01627 Hpt domain ACU12_14630 PF17149 Periplasmic sensor domain found in signal transduction proteins ACU12_14630 PF00672 HAMP domain ACU12_14630 PF00512 His Kinase A (phospho-acceptor) domain ACU12_14630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_14635 PF00072 Response regulator receiver domain ACU12_14635 PF09308 LuxQ, periplasmic ACU12_14635 PF00512 His Kinase A (phospho-acceptor) domain ACU12_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_14640 PF00665 Integrase core domain ACU12_14640 PF13936 Helix-turn-helix domain ACU12_14645 PF00512 His Kinase A (phospho-acceptor) domain ACU12_14645 PF17149 Periplasmic sensor domain found in signal transduction proteins ACU12_14645 PF00072 Response regulator receiver domain ACU12_14645 PF00672 HAMP domain ACU12_14645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_14645 PF01627 Hpt domain ACU12_14650 PF04264 YceI-like domain ACU12_14680 PF03313 Serine dehydratase alpha chain ACU12_14680 PF03315 Serine dehydratase beta chain ACU12_14690 PF01053 Cys/Met metabolism PLP-dependent enzyme ACU12_14695 PF00561 alpha/beta hydrolase fold ACU12_14700 PF08525 Opacity-associated protein A N-terminal motif ACU12_14700 PF01476 LysM domain ACU12_14700 PF01551 Peptidase family M23 ACU12_14705 PF00009 Elongation factor Tu GTP binding domain ACU12_14705 PF16658 Class II release factor RF3, C-terminal domain ACU12_14710 PF03006 Haemolysin-III related ACU12_14720 PF05598 Transposase domain (DUF772) ACU12_14730 PF00478 IMP dehydrogenase / GMP reductase domain ACU12_14730 PF00571 CBS domain ACU12_14735 PF00535 Glycosyl transferase family 2 ACU12_14740 PF00912 Transglycosylase ACU12_14745 PF01430 Hsp33 protein ACU12_14755 PF07715 TonB-dependent Receptor Plug Domain ACU12_14755 PF00593 TonB dependent receptor ACU12_14760 PF00440 Bacterial regulatory proteins, tetR family ACU12_14770 PF09317 Domain of unknown function (DUF1974) ACU12_14770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACU12_14770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACU12_14795 PF01597 Glycine cleavage H-protein ACU12_14800 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACU12_14800 PF01571 Aminomethyltransferase folate-binding domain ACU12_14810 PF01145 SPFH domain / Band 7 family ACU12_14810 PF16200 C-terminal region of band_7 ACU12_14815 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ACU12_14820 PF03819 MazG nucleotide pyrophosphohydrolase domain ACU12_14825 PF00459 Inositol monophosphatase family ACU12_14830 PF00293 NUDIX domain ACU12_14835 PF00202 Aminotransferase class-III ACU12_14840 PF04452 RNA methyltransferase ACU12_14845 PF02685 Glucokinase ACU12_14860 PF00704 Glycosyl hydrolases family 18 ACU12_14860 PF01476 LysM domain ACU12_14865 PF07691 PA14 domain ACU12_14865 PF02838 Glycosyl hydrolase family 20, domain 2 ACU12_14865 PF00728 Glycosyl hydrolase family 20, catalytic domain ACU12_14875 PF14310 Fibronectin type III-like domain ACU12_14875 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACU12_14875 PF07691 PA14 domain ACU12_14875 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_14880 PF00664 ABC transporter transmembrane region ACU12_14880 PF00005 ABC transporter ACU12_14880 PF03412 Peptidase C39 family ACU12_14885 PF13936 Helix-turn-helix domain ACU12_14885 PF00665 Integrase core domain ACU12_14895 PF17678 Glycosyl hydrolase family 92 N-terminal domain ACU12_14895 PF07971 Glycosyl hydrolase family 92 ACU12_14900 PF01301 Glycosyl hydrolases family 35 ACU12_14935 PF03932 CutC family ACU12_14940 PF01112 Asparaginase ACU12_14960 PF13302 Acetyltransferase (GNAT) domain ACU12_14975 PF01584 CheW-like domain ACU12_14975 PF01627 Hpt domain ACU12_14975 PF00072 Response regulator receiver domain ACU12_14975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_14980 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ACU12_14980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_14985 PF01584 CheW-like domain ACU12_14990 PF00072 Response regulator receiver domain ACU12_14995 PF00072 Response regulator receiver domain ACU12_15000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ACU12_15000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ACU12_15010 PF03747 ADP-ribosylglycohydrolase ACU12_15015 PF00814 Glycoprotease family ACU12_15020 PF13307 Helicase C-terminal domain ACU12_15020 PF04851 Type III restriction enzyme, res subunit ACU12_15030 PF00912 Transglycosylase ACU12_15030 PF14814 Bifunctional transglycosylase second domain ACU12_15030 PF00905 Penicillin binding protein transpeptidase domain ACU12_15035 PF00535 Glycosyl transferase family 2 ACU12_15045 PF04607 Region found in RelA / SpoT proteins ACU12_15045 PF13291 ACT domain ACU12_15045 PF02824 TGS domain ACU12_15050 PF12706 Beta-lactamase superfamily domain ACU12_15055 PF03070 TENA/THI-4/PQQC family ACU12_15060 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ACU12_15065 PF04055 Radical SAM superfamily ACU12_15065 PF13186 Iron-sulfur cluster-binding domain ACU12_15085 PF02685 Glucokinase ACU12_15090 PF02685 Glucokinase ACU12_15100 PF00270 DEAD/DEAH box helicase ACU12_15100 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ACU12_15100 PF11898 Domain of unknown function (DUF3418) ACU12_15100 PF04408 Helicase associated domain (HA2) ACU12_15100 PF00271 Helicase conserved C-terminal domain ACU12_15105 PF00210 Ferritin-like domain ACU12_15110 PF00570 HRDC domain ACU12_15110 PF16124 RecQ zinc-binding ACU12_15110 PF09382 RQC domain ACU12_15110 PF00270 DEAD/DEAH box helicase ACU12_15110 PF00271 Helicase conserved C-terminal domain ACU12_15125 PF01479 S4 domain ACU12_15125 PF00849 RNA pseudouridylate synthase ACU12_15135 PF00672 HAMP domain ACU12_15135 PF02203 Tar ligand binding domain homologue ACU12_15135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_15160 PF06508 Queuosine biosynthesis protein QueC ACU12_15170 PF04055 Radical SAM superfamily ACU12_15180 PF00691 OmpA family ACU12_15185 PF04052 TolB amino-terminal domain ACU12_15185 PF07676 WD40-like Beta Propeller Repeat ACU12_15195 PF02472 Biopolymer transport protein ExbD/TolR ACU12_15200 PF01618 MotA/TolQ/ExbB proton channel family ACU12_15205 PF03061 Thioesterase superfamily ACU12_15210 PF05491 RuvB C-terminal winged helix domain ACU12_15210 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACU12_15210 PF17864 RuvB AAA lid domain ACU12_15215 PF02705 K+ potassium transporter ACU12_15220 PF01330 RuvA N terminal domain ACU12_15220 PF07499 RuvA, C-terminal domain ACU12_15225 PF02075 Crossover junction endodeoxyribonuclease RuvC ACU12_15230 PF01709 Transcriptional regulator ACU12_15245 PF00152 tRNA synthetases class II (D, K and N) ACU12_15245 PF02938 GAD domain ACU12_15245 PF01336 OB-fold nucleic acid binding domain ACU12_15260 PF07690 Major Facilitator Superfamily ACU12_15265 PF04185 Phosphoesterase family ACU12_15265 PF05506 Domain of unknown function (DUF756) ACU12_15275 PF07859 alpha/beta hydrolase fold ACU12_15275 PF13472 GDSL-like Lipase/Acylhydrolase family ACU12_15285 PF03466 LysR substrate binding domain ACU12_15285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_15295 PF00005 ABC transporter ACU12_15295 PF12848 ABC transporter ACU12_15300 PF07715 TonB-dependent Receptor Plug Domain ACU12_15300 PF00593 TonB dependent receptor ACU12_15310 PF07715 TonB-dependent Receptor Plug Domain ACU12_15310 PF00593 TonB dependent receptor ACU12_15315 PF00593 TonB dependent receptor ACU12_15315 PF07715 TonB-dependent Receptor Plug Domain ACU12_15330 PF00999 Sodium/hydrogen exchanger family ACU12_15330 PF02254 TrkA-N domain ACU12_15350 PF07660 Secretin and TonB N terminus short domain ACU12_15350 PF07715 TonB-dependent Receptor Plug Domain ACU12_15350 PF00593 TonB dependent receptor ACU12_15360 PF04183 IucA / IucC family ACU12_15360 PF06276 Ferric iron reductase FhuF-like transporter ACU12_15365 PF07690 Major Facilitator Superfamily ACU12_15375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACU12_15375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACU12_15380 PF02654 Cobalamin-5-phosphate synthase ACU12_15390 PF02277 Phosphoribosyltransferase ACU12_15395 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ACU12_15400 PF00155 Aminotransferase class I and II ACU12_15405 PF12557 Cob(I)alamin adenosyltransferase N terminal ACU12_15405 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ACU12_15420 PF07715 TonB-dependent Receptor Plug Domain ACU12_15420 PF00593 TonB dependent receptor ACU12_15425 PF13276 HTH-like domain ACU12_15425 PF13683 Integrase core domain ACU12_15430 PF01527 Transposase ACU12_15435 PF00004 ATPase family associated with various cellular activities (AAA) ACU12_15435 PF07724 AAA domain (Cdc48 subfamily) ACU12_15435 PF17871 AAA lid domain ACU12_15435 PF10431 C-terminal, D2-small domain, of ClpB protein ACU12_15435 PF02861 Clp amino terminal domain, pathogenicity island component ACU12_15440 PF01541 GIY-YIG catalytic domain ACU12_15450 PF05188 MutS domain II ACU12_15450 PF05192 MutS domain III ACU12_15450 PF01624 MutS domain I ACU12_15450 PF05190 MutS family domain IV ACU12_15450 PF00488 MutS domain V ACU12_15460 PF00141 Peroxidase ACU12_15465 PF01479 S4 domain ACU12_15470 PF00665 Integrase core domain ACU12_15470 PF13936 Helix-turn-helix domain ACU12_15475 PF01554 MatE ACU12_15480 PF01245 Ribosomal protein L19 ACU12_15485 PF01746 tRNA (Guanine-1)-methyltransferase ACU12_15490 PF05239 PRC-barrel domain ACU12_15490 PF01782 RimM N-terminal domain ACU12_15495 PF00886 Ribosomal protein S16 ACU12_15505 PF03060 Nitronate monooxygenase ACU12_15520 PF00448 SRP54-type protein, GTPase domain ACU12_15520 PF02978 Signal peptide binding domain ACU12_15520 PF02881 SRP54-type protein, helical bundle domain ACU12_15525 PF01578 Cytochrome C assembly protein ACU12_15530 PF01263 Aldose 1-epimerase ACU12_15535 PF06964 Alpha-L-arabinofuranosidase C-terminal domain ACU12_15550 PF08448 PAS fold ACU12_15550 PF00512 His Kinase A (phospho-acceptor) domain ACU12_15550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_15550 PF00072 Response regulator receiver domain ACU12_15550 PF13188 PAS domain ACU12_15555 PF00672 HAMP domain ACU12_15555 PF01627 Hpt domain ACU12_15555 PF17149 Periplasmic sensor domain found in signal transduction proteins ACU12_15555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_15555 PF00512 His Kinase A (phospho-acceptor) domain ACU12_15555 PF00072 Response regulator receiver domain ACU12_15565 PF13581 Histidine kinase-like ATPase domain ACU12_15570 PF01740 STAS domain ACU12_15575 PF08678 Rsbr N terminal ACU12_15575 PF01740 STAS domain ACU12_15590 PF00183 Hsp90 protein ACU12_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_15595 PF12833 Helix-turn-helix domain ACU12_15615 PF18073 Rubredoxin metal binding domain ACU12_15620 PF01527 Transposase ACU12_15625 PF13683 Integrase core domain ACU12_15625 PF13276 HTH-like domain ACU12_15640 PF03527 RHS protein ACU12_15640 PF05593 RHS Repeat ACU12_15640 PF14220 Domain of unknown function (DUF4329) ACU12_15680 PF04717 Type VI secretion system, phage-baseplate injector ACU12_15690 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ACU12_15695 PF00510 Cytochrome c oxidase subunit III ACU12_15700 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACU12_15705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACU12_15705 PF06481 COX Aromatic Rich Motif ACU12_15715 PF02401 LytB protein ACU12_15720 PF01252 Signal peptidase (SPase) II ACU12_15725 PF06827 Zinc finger found in FPG and IleRS ACU12_15725 PF00133 tRNA synthetases class I (I, L, M and V) ACU12_15725 PF08264 Anticodon-binding domain of tRNA ACU12_15730 PF01687 Riboflavin kinase ACU12_15730 PF06574 FAD synthetase ACU12_15735 PF03023 Lipid II flippase MurJ ACU12_15740 PF01649 Ribosomal protein S20 ACU12_15745 PF01018 GTP1/OBG ACU12_15745 PF01926 50S ribosome-binding GTPase ACU12_15750 PF01016 Ribosomal L27 protein ACU12_15755 PF00829 Ribosomal prokaryotic L21 protein ACU12_15760 PF17760 UvrA interaction domain ACU12_15760 PF00005 ABC transporter ACU12_15760 PF17755 UvrA DNA-binding domain ACU12_15775 PF00378 Enoyl-CoA hydratase/isomerase ACU12_15790 PF04542 Sigma-70 region 2 ACU12_15790 PF08281 Sigma-70, region 4 ACU12_15805 PF04377 Arginine-tRNA-protein transferase, C terminus ACU12_15805 PF04376 Arginine-tRNA-protein transferase, N terminus ACU12_15820 PF13340 Putative transposase of IS4/5 family (DUF4096) ACU12_15840 PF07715 TonB-dependent Receptor Plug Domain ACU12_15840 PF00593 TonB dependent receptor ACU12_15850 PF02358 Trehalose-phosphatase ACU12_15855 PF00723 Glycosyl hydrolases family 15 ACU12_15860 PF00982 Glycosyltransferase family 20 ACU12_15865 PF01011 PQQ enzyme repeat ACU12_15870 PF00672 HAMP domain ACU12_15870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACU12_15870 PF02203 Tar ligand binding domain homologue ACU12_15875 PF04134 Protein of unknown function, DUF393 ACU12_15890 PF00849 RNA pseudouridylate synthase ACU12_15895 PF13525 Outer membrane lipoprotein ACU12_15900 PF02540 NAD synthase ACU12_15900 PF00795 Carbon-nitrogen hydrolase ACU12_15910 PF02629 CoA binding domain ACU12_15910 PF00549 CoA-ligase ACU12_15915 PF08442 ATP-grasp domain ACU12_15915 PF00549 CoA-ligase ACU12_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_15920 PF00512 His Kinase A (phospho-acceptor) domain ACU12_15930 PF02661 Fic/DOC family ACU12_15930 PF18543 Intracellular delivery domain ACU12_15935 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACU12_15935 PF00437 Type II/IV secretion system protein ACU12_15950 PF08019 Phosphoethanolamine transferase EptA/EptB ACU12_15950 PF00884 Sulfatase ACU12_15955 PF07963 Prokaryotic N-terminal methylation motif ACU12_15955 PF00114 Pilin (bacterial filament) ACU12_15960 PF00482 Type II secretion system (T2SS), protein F ACU12_15965 PF01478 Type IV leader peptidase family ACU12_15965 PF06750 Bacterial Peptidase A24 N-terminal domain ACU12_15970 PF01121 Dephospho-CoA kinase ACU12_15975 PF05598 Transposase domain (DUF772) ACU12_15975 PF01609 Transposase DDE domain ACU12_15985 PF13936 Helix-turn-helix domain ACU12_15985 PF00665 Integrase core domain ACU12_15990 PF05598 Transposase domain (DUF772) ACU12_16000 PF01527 Transposase ACU12_16005 PF13683 Integrase core domain ACU12_16005 PF13276 HTH-like domain ACU12_16020 PF00989 PAS fold ACU12_16020 PF00512 His Kinase A (phospho-acceptor) domain ACU12_16020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_16020 PF11808 Phosphate regulon sensor protein PhoR ACU12_16025 PF00072 Response regulator receiver domain ACU12_16025 PF00486 Transcriptional regulatory protein, C terminal ACU12_16035 PF18030 RimK PreATP-grasp domain ACU12_16035 PF08443 RimK-like ATP-grasp domain ACU12_16040 PF00128 Alpha amylase, catalytic domain ACU12_16040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACU12_16070 PF05598 Transposase domain (DUF772) ACU12_16070 PF01609 Transposase DDE domain ACU12_16100 PF16671 Actin cross-linking domain ACU12_16100 PF04717 Type VI secretion system, phage-baseplate injector ACU12_16115 PF03797 Autotransporter beta-domain ACU12_16115 PF00657 GDSL-like Lipase/Acylhydrolase ACU12_16125 PF05690 Thiazole biosynthesis protein ThiG ACU12_16130 PF02390 Putative methyltransferase ACU12_16135 PF02080 TrkA-C domain ACU12_16135 PF03600 Citrate transporter ACU12_16150 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACU12_16155 PF01741 Large-conductance mechanosensitive channel, MscL ACU12_16165 PF13683 Integrase core domain ACU12_16165 PF13276 HTH-like domain ACU12_16170 PF01527 Transposase ACU12_16180 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACU12_16180 PF00588 SpoU rRNA Methylase family ACU12_16200 PF11838 ERAP1-like C-terminal domain ACU12_16200 PF01433 Peptidase family M1 domain ACU12_16205 PF00873 AcrB/AcrD/AcrF family ACU12_16210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_16210 PF00529 HlyD membrane-fusion protein of T1SS ACU12_16215 PF00009 Elongation factor Tu GTP binding domain ACU12_16220 PF01507 Phosphoadenosine phosphosulfate reductase family ACU12_16225 PF00258 Flavodoxin ACU12_16225 PF00667 FAD binding domain ACU12_16225 PF00175 Oxidoreductase NAD-binding domain ACU12_16230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACU12_16230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACU12_16235 PF01507 Phosphoadenosine phosphosulfate reductase family ACU12_16255 PF00672 HAMP domain ACU12_16255 PF00512 His Kinase A (phospho-acceptor) domain ACU12_16255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_16255 PF01627 Hpt domain ACU12_16255 PF00072 Response regulator receiver domain ACU12_16270 PF03466 LysR substrate binding domain ACU12_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_16275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACU12_16275 PF14824 Sirohaem biosynthesis protein central ACU12_16275 PF10414 Sirohaem synthase dimerisation region ACU12_16280 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_16290 PF01661 Macro domain ACU12_16295 PF00274 Fructose-bisphosphate aldolase class-I ACU12_16300 PF02887 Pyruvate kinase, alpha/beta domain ACU12_16300 PF00224 Pyruvate kinase, barrel domain ACU12_16310 PF00162 Phosphoglycerate kinase ACU12_16320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACU12_16320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACU12_16340 PF00753 Metallo-beta-lactamase superfamily ACU12_16340 PF04273 Putative phosphatase (DUF442) ACU12_16350 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_16355 PF03459 TOBE domain ACU12_16355 PF00005 ABC transporter ACU12_16455 PF02780 Transketolase, C-terminal domain ACU12_16455 PF02779 Transketolase, pyrimidine binding domain ACU12_16455 PF00456 Transketolase, thiamine diphosphate binding domain ACU12_16465 PF01527 Transposase ACU12_16470 PF13683 Integrase core domain ACU12_16470 PF13276 HTH-like domain ACU12_16475 PF05598 Transposase domain (DUF772) ACU12_16490 PF07584 Aerotolerance regulator N-terminal ACU12_16490 PF00092 von Willebrand factor type A domain ACU12_16510 PF17863 AAA lid domain ACU12_16510 PF07726 ATPase family associated with various cellular activities (AAA) ACU12_16515 PF07660 Secretin and TonB N terminus short domain ACU12_16515 PF03958 Bacterial type II/III secretion system short domain ACU12_16515 PF00263 Bacterial type II and III secretion system protein ACU12_16515 PF11741 AMIN domain ACU12_16540 PF00912 Transglycosylase ACU12_16540 PF00905 Penicillin binding protein transpeptidase domain ACU12_16540 PF17092 Penicillin-binding protein OB-like domain ACU12_16550 PF00285 Citrate synthase, C-terminal domain ACU12_16555 PF01197 Ribosomal protein L31 ACU12_16560 PF01156 Inosine-uridine preferring nucleoside hydrolase ACU12_16565 PF00270 DEAD/DEAH box helicase ACU12_16565 PF00271 Helicase conserved C-terminal domain ACU12_16565 PF17191 RecG wedge domain ACU12_16570 PF01042 Endoribonuclease L-PSP ACU12_16575 PF02824 TGS domain ACU12_16575 PF13291 ACT domain ACU12_16575 PF04607 Region found in RelA / SpoT proteins ACU12_16580 PF01192 RNA polymerase Rpb6 ACU12_16585 PF00625 Guanylate kinase ACU12_16590 PF08340 Domain of unknown function (DUF1732) ACU12_16590 PF03755 YicC-like family, N-terminal region ACU12_16595 PF03725 3' exoribonuclease family, domain 2 ACU12_16595 PF01138 3' exoribonuclease family, domain 1 ACU12_16600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACU12_16605 PF01725 Ham1 family ACU12_16610 PF04055 Radical SAM superfamily ACU12_16610 PF06969 HemN C-terminal domain ACU12_16625 PF00557 Metallopeptidase family M24 ACU12_16635 PF05195 Aminopeptidase P, N-terminal domain ACU12_16635 PF00557 Metallopeptidase family M24 ACU12_16640 PF03695 Uncharacterised protein family (UPF0149) ACU12_16650 PF05164 Cell division protein ZapA ACU12_16655 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACU12_16665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ACU12_16675 PF13369 Transglutaminase-like superfamily ACU12_16680 PF00301 Rubredoxin ACU12_16685 PF02581 Thiamine monophosphate synthase ACU12_16695 PF00202 Aminotransferase class-III ACU12_16705 PF00127 Copper binding proteins, plastocyanin/azurin family ACU12_16715 PF00155 Aminotransferase class I and II ACU12_16730 PF00034 Cytochrome c ACU12_16730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACU12_16735 PF01593 Flavin containing amine oxidoreductase ACU12_16750 PF00202 Aminotransferase class-III ACU12_16755 PF00520 Ion transport protein ACU12_16755 PF00027 Cyclic nucleotide-binding domain ACU12_16790 PF01062 Bestrophin, RFP-TM, chloride channel ACU12_16800 PF08245 Mur ligase middle domain ACU12_16800 PF02875 Mur ligase family, glutamate ligase domain ACU12_16800 PF01225 Mur ligase family, catalytic domain ACU12_16810 PF00365 Phosphofructokinase ACU12_16820 PF05598 Transposase domain (DUF772) ACU12_16840 PF03030 Inorganic H+ pyrophosphatase ACU12_16850 PF00719 Inorganic pyrophosphatase ACU12_16860 PF00593 TonB dependent receptor ACU12_16860 PF07715 TonB-dependent Receptor Plug Domain ACU12_16865 PF12833 Helix-turn-helix domain ACU12_16870 PF00486 Transcriptional regulatory protein, C terminal ACU12_16870 PF18500 CadC C-terminal domain 1 ACU12_16875 PF13667 ThiC-associated domain ACU12_16875 PF01964 Radical SAM ThiC family ACU12_16880 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACU12_16880 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACU12_16885 PF00205 Thiamine pyrophosphate enzyme, central domain ACU12_16885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACU12_16885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACU12_16895 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_16900 PF08502 LeuA allosteric (dimerisation) domain ACU12_16900 PF00682 HMGL-like ACU12_16905 PF00180 Isocitrate/isopropylmalate dehydrogenase ACU12_16910 PF08241 Methyltransferase domain ACU12_16915 PF00694 Aconitase C-terminal domain ACU12_16920 PF00330 Aconitase family (aconitate hydratase) ACU12_16925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_16930 PF00990 Diguanylate cyclase, GGDEF domain ACU12_16930 PF17158 Membrane-associated sensor, integral membrane domain ACU12_16945 PF02321 Outer membrane efflux protein ACU12_16950 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACU12_16955 PF03279 Bacterial lipid A biosynthesis acyltransferase ACU12_16985 PF00390 Malic enzyme, N-terminal domain ACU12_16985 PF01515 Phosphate acetyl/butaryl transferase ACU12_16985 PF03949 Malic enzyme, NAD binding domain ACU12_16990 PF00375 Sodium:dicarboxylate symporter family ACU12_17000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_17000 PF00512 His Kinase A (phospho-acceptor) domain ACU12_17005 PF07690 Major Facilitator Superfamily ACU12_17015 PF03466 LysR substrate binding domain ACU12_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_17040 PF00072 Response regulator receiver domain ACU12_17040 PF00196 Bacterial regulatory proteins, luxR family ACU12_17050 PF00512 His Kinase A (phospho-acceptor) domain ACU12_17050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_17050 PF08521 Two-component sensor kinase N-terminal ACU12_17055 PF00072 Response regulator receiver domain ACU12_17055 PF00486 Transcriptional regulatory protein, C terminal ACU12_17065 PF03600 Citrate transporter ACU12_17070 PF00106 short chain dehydrogenase ACU12_17075 PF00356 Bacterial regulatory proteins, lacI family ACU12_17090 PF00128 Alpha amylase, catalytic domain ACU12_17105 PF03193 RsgA GTPase ACU12_17110 PF00155 Aminotransferase class I and II ACU12_17125 PF01522 Polysaccharide deacetylase ACU12_17130 PF00462 Glutaredoxin ACU12_17150 PF01979 Amidohydrolase family ACU12_17155 PF01979 Amidohydrolase family ACU12_17175 PF01327 Polypeptide deformylase ACU12_17180 PF03960 ArsC family ACU12_17190 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACU12_17190 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ACU12_17225 PF00593 TonB dependent receptor ACU12_17225 PF07715 TonB-dependent Receptor Plug Domain ACU12_17235 PF00392 Bacterial regulatory proteins, gntR family ACU12_17235 PF07702 UTRA domain ACU12_17245 PF00263 Bacterial type II and III secretion system protein ACU12_17245 PF03958 Bacterial type II/III secretion system short domain ACU12_17255 PF10741 Type II secretion system (T2SS), protein M subtype b ACU12_17260 PF05137 Fimbrial assembly protein (PilN) ACU12_17265 PF03934 Type II secretion system (T2SS), protein K ACU12_17275 PF07963 Prokaryotic N-terminal methylation motif ACU12_17280 PF12019 Type II transport protein GspH ACU12_17285 PF08334 Type II secretion system (T2SS), protein G ACU12_17290 PF00482 Type II secretion system (T2SS), protein F ACU12_17300 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACU12_17300 PF00437 Type II/IV secretion system protein ACU12_17305 PF04151 Bacterial pre-peptidase C-terminal domain ACU12_17305 PF00082 Subtilase family ACU12_17310 PF03895 YadA-like membrane anchor domain ACU12_17310 PF05658 Head domain of trimeric autotransporter adhesin ACU12_17310 PF13018 Extended Signal Peptide of Type V secretion system ACU12_17310 PF05662 Coiled stalk of trimeric autotransporter adhesin ACU12_17315 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ACU12_17315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACU12_17315 PF02769 AIR synthase related protein, C-terminal domain ACU12_17320 PF10411 Disulfide bond isomerase protein N-terminus ACU12_17320 PF13098 Thioredoxin-like domain ACU12_17325 PF00589 Phage integrase family ACU12_17325 PF02899 Phage integrase, N-terminal SAM-like domain ACU12_17340 PF03739 Lipopolysaccharide export system permease LptF/LptG ACU12_17350 PF00883 Cytosol aminopeptidase family, catalytic domain ACU12_17350 PF02789 Cytosol aminopeptidase family, N-terminal domain ACU12_17365 PF08264 Anticodon-binding domain of tRNA ACU12_17365 PF00133 tRNA synthetases class I (I, L, M and V) ACU12_17365 PF10458 Valyl tRNA synthetase tRNA binding arm ACU12_17370 PF01464 Transglycosylase SLT domain ACU12_17370 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ACU12_17375 PF00544 Pectate lyase ACU12_17390 PF01066 CDP-alcohol phosphatidyltransferase ACU12_17400 PF03129 Anticodon binding domain ACU12_17400 PF04073 Aminoacyl-tRNA editing domain ACU12_17400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACU12_17405 PF00816 H-NS histone family ACU12_17415 PF02405 Permease MlaE ACU12_17420 PF00005 ABC transporter ACU12_17425 PF03886 ABC-type transport auxiliary lipoprotein component ACU12_17425 PF02470 MlaD protein ACU12_17445 PF14307 Glycosyltransferase WbsX ACU12_17445 PF05045 Rhamnan synthesis protein F ACU12_17450 PF01144 Coenzyme A transferase ACU12_17455 PF01144 Coenzyme A transferase ACU12_17460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACU12_17460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACU12_17460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACU12_17460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACU12_17465 PF01050 Mannose-6-phosphate isomerase ACU12_17465 PF00483 Nucleotidyl transferase ACU12_17470 PF04321 RmlD substrate binding domain ACU12_17475 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACU12_17480 PF00483 Nucleotidyl transferase ACU12_17485 PF16363 GDP-mannose 4,6 dehydratase ACU12_17490 PF01012 Electron transfer flavoprotein domain ACU12_17495 PF01012 Electron transfer flavoprotein domain ACU12_17495 PF00766 Electron transfer flavoprotein FAD-binding domain ACU12_17505 PF01040 UbiA prenyltransferase family ACU12_17510 PF01565 FAD binding domain ACU12_17510 PF04030 D-arabinono-1,4-lactone oxidase ACU12_17515 PF00106 short chain dehydrogenase ACU12_17525 PF01370 NAD dependent epimerase/dehydratase family ACU12_17530 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_17530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACU12_17550 PF01209 ubiE/COQ5 methyltransferase family ACU12_17560 PF14307 Glycosyltransferase WbsX ACU12_17560 PF05045 Rhamnan synthesis protein F ACU12_17565 PF00535 Glycosyl transferase family 2 ACU12_17570 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_17575 PF00005 ABC transporter ACU12_17585 PF01053 Cys/Met metabolism PLP-dependent enzyme ACU12_17590 PF00291 Pyridoxal-phosphate dependent enzyme ACU12_17590 PF00571 CBS domain ACU12_17610 PF00437 Type II/IV secretion system protein ACU12_17620 PF02798 Glutathione S-transferase, N-terminal domain ACU12_17620 PF14497 Glutathione S-transferase, C-terminal domain ACU12_17630 PF00270 DEAD/DEAH box helicase ACU12_17630 PF00271 Helicase conserved C-terminal domain ACU12_17635 PF01242 6-pyruvoyl tetrahydropterin synthase ACU12_17650 PF13185 GAF domain ACU12_17660 PF13419 Haloacid dehalogenase-like hydrolase ACU12_17665 PF00817 impB/mucB/samB family ACU12_17665 PF11799 impB/mucB/samB family C-terminal domain ACU12_17670 PF07977 FabA-like domain ACU12_17675 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_17675 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_17685 PF01432 Peptidase family M3 ACU12_17710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACU12_17720 PF05598 Transposase domain (DUF772) ACU12_17725 PF05598 Transposase domain (DUF772) ACU12_17725 PF01609 Transposase DDE domain ACU12_17740 PF01380 SIS domain ACU12_17745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_17750 PF00005 ABC transporter ACU12_17760 PF12704 MacB-like periplasmic core domain ACU12_17760 PF02687 FtsX-like permease family ACU12_17760 PF00005 ABC transporter ACU12_17770 PF12704 MacB-like periplasmic core domain ACU12_17770 PF00005 ABC transporter ACU12_17770 PF02687 FtsX-like permease family ACU12_17775 PF00158 Sigma-54 interaction domain ACU12_17775 PF02954 Bacterial regulatory protein, Fis family ACU12_17775 PF00072 Response regulator receiver domain ACU12_17780 PF00512 His Kinase A (phospho-acceptor) domain ACU12_17780 PF00989 PAS fold ACU12_17780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_17785 PF00132 Bacterial transferase hexapeptide (six repeats) ACU12_17785 PF14602 Hexapeptide repeat of succinyl-transferase ACU12_17785 PF12804 MobA-like NTP transferase domain ACU12_17795 PF01817 Chorismate mutase type II ACU12_17800 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACU12_17805 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACU12_17805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACU12_17810 PF00231 ATP synthase ACU12_17815 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACU12_17815 PF00306 ATP synthase alpha/beta chain, C terminal domain ACU12_17815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACU12_17820 PF00213 ATP synthase delta (OSCP) subunit ACU12_17825 PF00430 ATP synthase B/B' CF(0) ACU12_17830 PF00137 ATP synthase subunit C ACU12_17835 PF00119 ATP synthase A chain ACU12_17855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACU12_17855 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_17865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACU12_17865 PF00364 Biotin-requiring enzyme ACU12_17865 PF02817 e3 binding domain ACU12_17895 PF03180 NLPA lipoprotein ACU12_17900 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_17905 PF09383 NIL domain ACU12_17905 PF00005 ABC transporter ACU12_17910 PF00892 EamA-like transporter family ACU12_17915 PF04461 Protein of unknown function (DUF520) ACU12_17945 PF13419 Haloacid dehalogenase-like hydrolase ACU12_17950 PF01479 S4 domain ACU12_17950 PF00849 RNA pseudouridylate synthase ACU12_17955 PF08468 Methyltransferase small domain N-terminal ACU12_17955 PF05175 Methyltransferase small domain ACU12_17970 PF07995 Glucose / Sorbosone dehydrogenase ACU12_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_17980 PF00989 PAS fold ACU12_17980 PF00512 His Kinase A (phospho-acceptor) domain ACU12_18000 PF01168 Alanine racemase, N-terminal domain ACU12_18000 PF00842 Alanine racemase, C-terminal domain ACU12_18005 PF01266 FAD dependent oxidoreductase ACU12_18010 PF01037 Lrp/AsnC ligand binding domain ACU12_18020 PF01641 SelR domain ACU12_18030 PF01618 MotA/TolQ/ExbB proton channel family ACU12_18035 PF00691 OmpA family ACU12_18035 PF13677 Membrane MotB of proton-channel complex MotA/MotB ACU12_18050 PF00486 Transcriptional regulatory protein, C terminal ACU12_18050 PF00072 Response regulator receiver domain ACU12_18055 PF08448 PAS fold ACU12_18055 PF00512 His Kinase A (phospho-acceptor) domain ACU12_18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_18055 PF13188 PAS domain ACU12_18055 PF00072 Response regulator receiver domain ACU12_18065 PF00082 Subtilase family ACU12_18065 PF04151 Bacterial pre-peptidase C-terminal domain ACU12_18080 PF01061 ABC-2 type transporter ACU12_18085 PF00005 ABC transporter ACU12_18090 PF00999 Sodium/hydrogen exchanger family ACU12_18095 PF02469 Fasciclin domain ACU12_18100 PF03167 Uracil DNA glycosylase superfamily ACU12_18110 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ACU12_18125 PF00248 Aldo/keto reductase family ACU12_18140 PF05649 Peptidase family M13 ACU12_18140 PF01431 Peptidase family M13 ACU12_18155 PF13520 Amino acid permease ACU12_18165 PF04397 LytTr DNA-binding domain ACU12_18165 PF00072 Response regulator receiver domain ACU12_18170 PF02743 Cache domain ACU12_18170 PF00672 HAMP domain ACU12_18170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_18170 PF06580 Histidine kinase ACU12_18185 PF08448 PAS fold ACU12_18185 PF03705 CheR methyltransferase, all-alpha domain ACU12_18185 PF01739 CheR methyltransferase, SAM binding domain ACU12_18185 PF01339 CheB methylesterase ACU12_18200 PF02954 Bacterial regulatory protein, Fis family ACU12_18200 PF00158 Sigma-54 interaction domain ACU12_18200 PF00072 Response regulator receiver domain ACU12_18210 PF01654 Cytochrome bd terminal oxidase subunit I ACU12_18215 PF02322 Cytochrome bd terminal oxidase subunit II ACU12_18230 PF08240 Alcohol dehydrogenase GroES-like domain ACU12_18230 PF13823 Alcohol dehydrogenase GroES-associated ACU12_18230 PF00107 Zinc-binding dehydrogenase ACU12_18270 PF00593 TonB dependent receptor ACU12_18270 PF07715 TonB-dependent Receptor Plug Domain ACU12_18285 PF00005 ABC transporter ACU12_18290 PF03377 TAL effector repeat ACU12_18295 PF05598 Transposase domain (DUF772) ACU12_18300 PF17831 Pyruvate dehydrogenase E1 component middle domain ACU12_18300 PF00456 Transketolase, thiamine diphosphate binding domain ACU12_18310 PF13276 HTH-like domain ACU12_18310 PF13683 Integrase core domain ACU12_18315 PF04264 YceI-like domain ACU12_18320 PF00881 Nitroreductase family ACU12_18350 PF02592 Putative vitamin uptake transporter ACU12_18355 PF08335 GlnD PII-uridylyltransferase ACU12_18355 PF03710 Glutamate-ammonia ligase adenylyltransferase ACU12_18365 PF08450 SMP-30/Gluconolactonase/LRE-like region ACU12_18380 PF00793 DAHP synthetase I family ACU12_18385 PF00593 TonB dependent receptor ACU12_18385 PF07715 TonB-dependent Receptor Plug Domain ACU12_18395 PF00118 TCP-1/cpn60 chaperonin family ACU12_18400 PF00166 Chaperonin 10 Kd subunit ACU12_18430 PF03458 UPF0126 domain ACU12_18435 PF04545 Sigma-70, region 4 ACU12_18435 PF04542 Sigma-70 region 2 ACU12_18440 PF03167 Uracil DNA glycosylase superfamily ACU12_18445 PF00072 Response regulator receiver domain ACU12_18445 PF01339 CheB methylesterase ACU12_18450 PF18075 FtsX extracellular domain ACU12_18455 PF00005 ABC transporter ACU12_18460 PF00270 DEAD/DEAH box helicase ACU12_18460 PF12300 ATP-dependent RNA helicase RhlB ACU12_18460 PF00271 Helicase conserved C-terminal domain ACU12_18465 PF00085 Thioredoxin ACU12_18470 PF07498 Rho termination factor, N-terminal domain ACU12_18470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACU12_18470 PF07497 Rho termination factor, RNA-binding domain ACU12_18485 PF03971 Monomeric isocitrate dehydrogenase ACU12_18500 PF14489 QueF-like protein ACU12_18500 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ACU12_18510 PF01546 Peptidase family M20/M25/M40 ACU12_18510 PF07687 Peptidase dimerisation domain ACU12_18515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACU12_18520 PF00873 AcrB/AcrD/AcrF family ACU12_18525 PF00873 AcrB/AcrD/AcrF family ACU12_18550 PF07063 Domain of unknown function (DUF1338) ACU12_18590 PF01427 D-ala-D-ala dipeptidase ACU12_18595 PF01510 N-acetylmuramoyl-L-alanine amidase ACU12_18605 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ACU12_18605 PF13378 Enolase C-terminal domain-like ACU12_18615 PF13520 Amino acid permease ACU12_18630 PF05360 yiaA/B two helix domain ACU12_18635 PF07995 Glucose / Sorbosone dehydrogenase ACU12_18645 PF00933 Glycosyl hydrolase family 3 N terminal domain ACU12_18645 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACU12_18645 PF14310 Fibronectin type III-like domain ACU12_18650 PF02152 Dihydroneopterin aldolase ACU12_18655 PF00814 Glycoprotease family ACU12_18660 PF01165 Ribosomal protein S21 ACU12_18665 PF09424 Yqey-like protein ACU12_18670 PF03631 Virulence factor BrkB ACU12_18675 PF08275 DNA primase catalytic core, N-terminal domain ACU12_18675 PF08278 DNA primase DnaG DnaB-binding ACU12_18675 PF01807 CHC2 zinc finger ACU12_18675 PF10410 DnaB-helicase binding domain of primase ACU12_18685 PF13593 SBF-like CPA transporter family (DUF4137) ACU12_18695 PF01040 UbiA prenyltransferase family ACU12_18720 PF00510 Cytochrome c oxidase subunit III ACU12_18725 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ACU12_18735 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACU12_18740 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ACU12_18740 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACU12_18750 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACU12_18750 PF00171 Aldehyde dehydrogenase family ACU12_18750 PF01619 Proline dehydrogenase ACU12_18750 PF14850 DNA-binding domain of Proline dehydrogenase ACU12_18765 PF01527 Transposase ACU12_18795 PF00579 tRNA synthetases class I (W and Y) ACU12_18800 PF04225 Opacity-associated protein A LysM-like domain ACU12_18800 PF01551 Peptidase family M23 ACU12_18805 PF03702 Anhydro-N-acetylmuramic acid kinase ACU12_18815 PF07690 Major Facilitator Superfamily ACU12_18820 PF03372 Endonuclease/Exonuclease/phosphatase family ACU12_18845 PF02868 Thermolysin metallopeptidase, alpha-helical domain ACU12_18845 PF01483 Proprotein convertase P-domain ACU12_18845 PF01447 Thermolysin metallopeptidase, catalytic domain ACU12_18845 PF07504 Fungalysin/Thermolysin Propeptide Motif ACU12_18860 PF00361 Proton-conducting membrane transporter ACU12_18860 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ACU12_18860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACU12_18860 PF13244 Domain of unknown function (DUF4040) ACU12_18865 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACU12_18870 PF00361 Proton-conducting membrane transporter ACU12_18880 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ACU12_18885 PF03334 Na+/H+ antiporter subunit ACU12_18890 PF04209 homogentisate 1,2-dioxygenase ACU12_18900 PF01527 Transposase ACU12_18905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACU12_18910 PF01047 MarR family ACU12_18920 PF00854 POT family ACU12_18925 PF03301 Tryptophan 2,3-dioxygenase ACU12_18935 PF00676 Dehydrogenase E1 component ACU12_18940 PF02779 Transketolase, pyrimidine binding domain ACU12_18940 PF02780 Transketolase, C-terminal domain ACU12_18950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACU12_18950 PF00364 Biotin-requiring enzyme ACU12_18950 PF02817 e3 binding domain ACU12_18960 PF05598 Transposase domain (DUF772) ACU12_18960 PF01609 Transposase DDE domain ACU12_18965 PF01609 Transposase DDE domain ACU12_18965 PF05598 Transposase domain (DUF772) ACU12_18975 PF00270 DEAD/DEAH box helicase ACU12_18975 PF00271 Helicase conserved C-terminal domain ACU12_18985 PF06903 VirK protein ACU12_19000 PF00106 short chain dehydrogenase ACU12_19010 PF05598 Transposase domain (DUF772) ACU12_19025 PF03377 TAL effector repeat ACU12_19030 PF03377 TAL effector repeat ACU12_19035 PF01527 Transposase ACU12_19040 PF13276 HTH-like domain ACU12_19040 PF13683 Integrase core domain ACU12_19060 PF00268 Ribonucleotide reductase, small chain ACU12_19065 PF03477 ATP cone domain ACU12_19065 PF00317 Ribonucleotide reductase, all-alpha domain ACU12_19065 PF02867 Ribonucleotide reductase, barrel domain ACU12_19075 PF13607 Succinyl-CoA ligase like flavodoxin domain ACU12_19075 PF13380 CoA binding domain ACU12_19075 PF00583 Acetyltransferase (GNAT) family ACU12_19085 PF00571 CBS domain ACU12_19085 PF01769 Divalent cation transporter ACU12_19085 PF03448 MgtE intracellular N domain ACU12_19090 PF00999 Sodium/hydrogen exchanger family ACU12_19090 PF02254 TrkA-N domain ACU12_19105 PF01609 Transposase DDE domain ACU12_19105 PF05598 Transposase domain (DUF772) ACU12_19110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACU12_19110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACU12_19115 PF00723 Glycosyl hydrolases family 15 ACU12_19130 PF05166 YcgL domain ACU12_19135 PF02801 Beta-ketoacyl synthase, C-terminal domain ACU12_19135 PF00109 Beta-ketoacyl synthase, N-terminal domain ACU12_19145 PF00535 Glycosyl transferase family 2 ACU12_19210 PF07977 FabA-like domain ACU12_19215 PF01553 Acyltransferase ACU12_19225 PF00550 Phosphopantetheine attachment site ACU12_19230 PF04820 Tryptophan halogenase ACU12_19245 PF00665 Integrase core domain ACU12_19245 PF13936 Helix-turn-helix domain ACU12_19270 PF01218 Coproporphyrinogen III oxidase ACU12_19280 PF01367 5'-3' exonuclease, C-terminal SAM fold ACU12_19280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACU12_19280 PF00476 DNA polymerase family A ACU12_19280 PF01612 3'-5' exonuclease ACU12_19325 PF14602 Hexapeptide repeat of succinyl-transferase ACU12_19325 PF12464 Maltose acetyltransferase ACU12_19335 PF13361 UvrD-like helicase C-terminal domain ACU12_19335 PF00580 UvrD/REP helicase N-terminal domain ACU12_19350 PF13091 PLD-like domain ACU12_19350 PF13396 Phospholipase_D-nuclease N-terminal ACU12_19355 PF03466 LysR substrate binding domain ACU12_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACU12_19360 PF03737 Aldolase/RraA ACU12_19365 PF04303 PrpF protein ACU12_19370 PF04909 Amidohydrolase ACU12_19375 PF00471 Ribosomal protein L33 ACU12_19380 PF00830 Ribosomal L28 family ACU12_19395 PF02527 rRNA small subunit methyltransferase G ACU12_19400 PF16655 PhoD-like phosphatase, N-terminal domain ACU12_19400 PF09423 PhoD-like phosphatase ACU12_19405 PF09423 PhoD-like phosphatase ACU12_19405 PF16655 PhoD-like phosphatase, N-terminal domain ACU12_19410 PF01648 4'-phosphopantetheinyl transferase superfamily ACU12_19415 PF04226 Transglycosylase associated protein ACU12_19425 PF03372 Endonuclease/Exonuclease/phosphatase family ACU12_19435 PF00474 Sodium:solute symporter family ACU12_19440 PF04341 Protein of unknown function, DUF485 ACU12_19450 PF16177 Acetyl-coenzyme A synthetase N-terminus ACU12_19450 PF00501 AMP-binding enzyme ACU12_19450 PF13193 AMP-binding enzyme C-terminal domain ACU12_19455 PF00072 Response regulator receiver domain ACU12_19455 PF00196 Bacterial regulatory proteins, luxR family ACU12_19475 PF01614 Bacterial transcriptional regulator ACU12_19475 PF09339 IclR helix-turn-helix domain ACU12_19480 PF02659 Putative manganese efflux pump ACU12_19485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_19485 PF00512 His Kinase A (phospho-acceptor) domain ACU12_19500 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ACU12_19500 PF06165 Glycosyltransferase family 36 ACU12_19515 PF13360 PQQ-like domain ACU12_19515 PF01011 PQQ enzyme repeat ACU12_19515 PF13570 PQQ-like domain ACU12_19535 PF01432 Peptidase family M3 ACU12_19550 PF00472 RF-1 domain ACU12_19560 PF00849 RNA pseudouridylate synthase ACU12_19575 PF03109 ABC1 family ACU12_19590 PF01820 D-ala D-ala ligase N-terminus ACU12_19590 PF07478 D-ala D-ala ligase C-terminus ACU12_19605 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ACU12_19610 PF00501 AMP-binding enzyme ACU12_19615 PF03692 Putative zinc- or iron-chelating domain ACU12_19620 PF00561 alpha/beta hydrolase fold ACU12_19625 PF02661 Fic/DOC family ACU12_19625 PF13784 Fic/DOC family N-terminal ACU12_19630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACU12_19630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACU12_19645 PF00588 SpoU rRNA Methylase family ACU12_19650 PF07690 Major Facilitator Superfamily ACU12_19665 PF00158 Sigma-54 interaction domain ACU12_19665 PF00072 Response regulator receiver domain ACU12_19665 PF02954 Bacterial regulatory protein, Fis family ACU12_19670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_19675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACU12_19675 PF00205 Thiamine pyrophosphate enzyme, central domain ACU12_19675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACU12_19685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACU12_19685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACU12_19690 PF02556 Preprotein translocase subunit SecB ACU12_19695 PF00581 Rhodanese-like domain ACU12_19735 PF00108 Thiolase, N-terminal domain ACU12_19735 PF02803 Thiolase, C-terminal domain ACU12_19750 PF01609 Transposase DDE domain ACU12_19750 PF05598 Transposase domain (DUF772) ACU12_19755 PF01609 Transposase DDE domain ACU12_19755 PF05598 Transposase domain (DUF772) ACU12_19770 PF00080 Copper/zinc superoxide dismutase (SODC) ACU12_19775 PF00080 Copper/zinc superoxide dismutase (SODC) ACU12_19780 PF00158 Sigma-54 interaction domain ACU12_19780 PF02954 Bacterial regulatory protein, Fis family ACU12_19780 PF00072 Response regulator receiver domain ACU12_19785 PF00989 PAS fold ACU12_19785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACU12_19785 PF00512 His Kinase A (phospho-acceptor) domain ACU12_19790 PF00909 Ammonium Transporter Family ACU12_19795 PF00543 Nitrogen regulatory protein P-II ACU12_19800 PF03951 Glutamine synthetase, beta-Grasp domain ACU12_19800 PF00120 Glutamine synthetase, catalytic domain ACU12_19805 PF02673 Bacitracin resistance protein BacA ACU12_19845 PF03061 Thioesterase superfamily ACU12_19850 PF13091 PLD-like domain ACU12_19865 PF01883 Iron-sulfur cluster assembly protein ACU12_19865 PF10609 NUBPL iron-transfer P-loop NTPase ACU12_19885 PF01381 Helix-turn-helix ACU12_19890 PF07804 HipA-like C-terminal domain ACU12_19890 PF13657 HipA N-terminal domain ACU12_19895 PF10017 Histidine-specific methyltransferase, SAM-dependent ACU12_19900 PF03781 Sulfatase-modifying factor enzyme 1 ACU12_19900 PF12867 DinB superfamily ACU12_19910 PF00528 Binding-protein-dependent transport system inner membrane component ACU12_19915 PF00571 CBS domain ACU12_19915 PF00005 ABC transporter ACU12_19930 PF00005 ABC transporter ACU12_19940 PF07687 Peptidase dimerisation domain ACU12_19940 PF01546 Peptidase family M20/M25/M40 ACU12_19945 PF01734 Patatin-like phospholipase ACU12_19950 PF07715 TonB-dependent Receptor Plug Domain ACU12_19950 PF00593 TonB dependent receptor ACU12_19955 PF01037 Lrp/AsnC ligand binding domain ACU12_19960 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ACU12_19980 PF00356 Bacterial regulatory proteins, lacI family ACU12_19995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACU12_19995 PF02806 Alpha amylase, C-terminal all-beta domain ACU12_19995 PF00128 Alpha amylase, catalytic domain ACU12_20000 PF00128 Alpha amylase, catalytic domain ACU12_20000 PF16657 Maltogenic Amylase, C-terminal domain ACU12_20005 PF00128 Alpha amylase, catalytic domain ACU12_20005 PF11896 Domain of unknown function (DUF3416) ACU12_20010 PF05598 Transposase domain (DUF772) ACU12_20015 PF05598 Transposase domain (DUF772) ACU12_20020 PF05598 Transposase domain (DUF772) ACU12_20020 PF01609 Transposase DDE domain ACU12_20030 PF01527 Transposase ACU12_20070 PF01590 GAF domain ACU12_20070 PF08446 PAS fold ACU12_20070 PF13426 PAS domain ACU12_20070 PF00360 Phytochrome region ACU12_20075 PF01126 Heme oxygenase ACU12_20080 PF07690 Major Facilitator Superfamily ACU12_20085 PF01263 Aldose 1-epimerase ACU12_20095 PF02810 SEC-C motif ACU12_20100 PF01925 Sulfite exporter TauE/SafE ACU12_20135 PF01227 GTP cyclohydrolase I ACU12_20160 PF00083 Sugar (and other) transporter ACU12_20220 PF05532 CsbD-like ACU12_20240 PF16485 Protealysin propeptide ACU12_20240 PF01447 Thermolysin metallopeptidase, catalytic domain ACU12_20240 PF02868 Thermolysin metallopeptidase, alpha-helical domain ACU12_20245 PF00293 NUDIX domain ACU12_20245 PF13344 Haloacid dehalogenase-like hydrolase ACU12_20270 PF08946 Osmosensory transporter coiled coil ACU12_20270 PF00083 Sugar (and other) transporter ACU12_20290 PF05598 Transposase domain (DUF772) ACU12_20290 PF01609 Transposase DDE domain ACU12_20295 PF01527 Transposase ACU12_20300 PF13683 Integrase core domain ACU12_20300 PF13276 HTH-like domain ACU12_20305 PF00294 pfkB family carbohydrate kinase ACU12_20315 PF07055 Enoyl reductase FAD binding domain ACU12_20315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ACU12_20315 PF12241 Trans-2-enoyl-CoA reductase catalytic region ACU12_20330 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ACU12_20335 PF01070 FMN-dependent dehydrogenase ACU12_20340 PF01609 Transposase DDE domain ACU12_20340 PF05598 Transposase domain (DUF772) ACU12_20350 PF07715 TonB-dependent Receptor Plug Domain ACU12_20350 PF00593 TonB dependent receptor ACU12_20355 PF00155 Aminotransferase class I and II ACU12_20360 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACU12_20380 PF03006 Haemolysin-III related ACU12_20385 PF00270 DEAD/DEAH box helicase ACU12_20385 PF09369 Domain of unknown function (DUF1998) ACU12_20385 PF00271 Helicase conserved C-terminal domain ACU12_20435 PF01645 Conserved region in glutamate synthase ACU12_20435 PF01493 GXGXG motif ACU12_20435 PF04898 Glutamate synthase central domain ACU12_20435 PF00310 Glutamine amidotransferases class-II ACU12_20440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACU12_20440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACU12_20450 PF05598 Transposase domain (DUF772) ACU12_20455 PF13520 Amino acid permease ACU12_20465 PF02646 RmuC family ACU12_20475 PF00255 Glutathione peroxidase ACU12_20480 PF04333 MlaA lipoprotein ACU12_20490 PF05494 MlaC protein ACU12_20495 PF02470 MlaD protein ACU12_20500 PF02405 Permease MlaE ACU12_20505 PF00005 ABC transporter ACU12_20530 PF17946 RecC C-terminal domain ACU12_20535 PF12705 PD-(D/E)XK nuclease superfamily ACU12_20535 PF00580 UvrD/REP helicase N-terminal domain ACU12_20535 PF13361 UvrD-like helicase C-terminal domain ACU12_20545 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ACU12_20550 PF01381 Helix-turn-helix ACU12_20635 PF00067 Cytochrome P450 ACU12_20640 PF00067 Cytochrome P450 ACU12_20645 PF00067 Cytochrome P450 ACU12_20660 PF00067 Cytochrome P450 ACU12_20665 PF00348 Polyprenyl synthetase ACU12_20680 PF01070 FMN-dependent dehydrogenase ACU12_20710 PF00849 RNA pseudouridylate synthase ACU12_20735 PF00990 Diguanylate cyclase, GGDEF domain ACU12_20745 PF02595 Glycerate kinase family ACU12_20750 PF07690 Major Facilitator Superfamily ACU12_20765 PF17785 PUA-like domain ACU12_20765 PF10672 S-adenosylmethionine-dependent methyltransferase ACU12_20770 PF03741 Integral membrane protein TerC family ACU12_20775 PF01694 Rhomboid family ACU12_20780 PF03009 Glycerophosphoryl diester phosphodiesterase family ACU12_20790 PF01569 PAP2 superfamily ACU12_20795 PF12631 MnmE helical domain ACU12_20795 PF10396 GTP-binding protein TrmE N-terminus ACU12_20795 PF01926 50S ribosome-binding GTPase ACU12_20800 PF01522 Polysaccharide deacetylase ACU12_20805 PF14849 YidC periplasmic domain ACU12_20805 PF02096 60Kd inner membrane protein ACU12_20810 PF00825 Ribonuclease P ACU12_20815 PF00468 Ribosomal protein L34