ACU12_00005 SM00382 ATPases associated with a variety of cellular activities ACU12_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain ACU12_00010 SM00480 DNA polymerase III beta subunit ACU12_00020 SM00387 Histidine kinase-like ATPases ACU12_00020 SM00433 TopoisomeraseII ACU12_00035 SM00028 Tetratricopeptide repeats ACU12_00070 SM00155 Phospholipase D. Active site motifs. ACU12_00090 SM00829 Enoylreductase ACU12_00130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_00130 SM00245 tail specific protease ACU12_00160 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_00175 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ACU12_00175 SM01232 ACU12_00175 ACU12_00205 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_00205 SM00388 His Kinase A (phosphoacceptor) domain ACU12_00240 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ACU12_00260 SM00354 helix_turn _helix lactose operon repressor ACU12_00270 SM00563 Phosphate acyltransferases ACU12_00275 SM00829 Enoylreductase ACU12_00345 SM00487 DEAD-like helicases superfamily ACU12_00345 SM00490 helicase superfamily c-terminal domain ACU12_00345 SM00847 Helicase associated domain (HA2) Add an annotation ACU12_00370 SM00829 Enoylreductase ACU12_00415 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_00440 SM00833 Cobalamin synthesis protein cobW C-terminal domain ACU12_00495 SM00878 Biotin carboxylase C-terminal domain ACU12_00530 SM00633 Glycosyl hydrolase family 10 ACU12_00535 SM00633 Glycosyl hydrolase family 10 ACU12_00580 SM01126 ACU12_00580 ACU12_00610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_00615 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_00635 SM00342 helix_turn_helix, arabinose operon control protein ACU12_00670 SM00882 Coenzyme A transferase ACU12_00675 SM00882 Coenzyme A transferase ACU12_00695 SM00998 Adenylosuccinate lyase C-terminus ACU12_00715 SM00346 helix_turn_helix isocitrate lyase regulation ACU12_00720 SM00090 RIO-like kinase ACU12_00775 SM01126 ACU12_00775 ACU12_00785 SM01228 ACU12_00785 ACU12_00840 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_00840 SM00876 Biotin and Thiamin Synthesis associated domain ACU12_00900 SM00836 DALR anticodon binding domain ACU12_00910 SM00382 ATPases associated with a variety of cellular activities ACU12_00985 SM00354 helix_turn _helix lactose operon repressor ACU12_01000 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ACU12_01010 SM00758 ACU12_01010 ACU12_01010 SM01217 ACU12_01010 ACU12_01035 SM00369 Leucine-rich repeats, typical (most populated) subfamily ACU12_01145 SM00382 ATPases associated with a variety of cellular activities ACU12_01215 SM00267 diguanylate cyclase ACU12_01225 SM00642 Alpha-amylase domain ACU12_01230 SM00642 Alpha-amylase domain ACU12_01240 SM00642 Alpha-amylase domain ACU12_01250 SM00642 Alpha-amylase domain ACU12_01385 SM01126 ACU12_01385 ACU12_01455 SM00448 cheY-homologous receiver domain ACU12_01455 SM00862 Transcriptional regulatory protein, C terminal ACU12_01460 SM00387 Histidine kinase-like ATPases ACU12_01465 SM00388 His Kinase A (phosphoacceptor) domain ACU12_01535 SM01004 Delta-aminolevulinic acid dehydratase ACU12_01550 SM00477 DNA/RNA non-specific endonuclease ACU12_01550 SM00892 DNA/RNA non-specific endonuclease ACU12_01580 SM00491 ACU12_01580 ACU12_01600 SM01060 ACU12_01600 ACU12_01605 SM00248 ankyrin repeats ACU12_01630 SM00448 cheY-homologous receiver domain ACU12_01630 SM00862 Transcriptional regulatory protein, C terminal ACU12_01635 SM00387 Histidine kinase-like ATPases ACU12_01635 SM00388 His Kinase A (phosphoacceptor) domain ACU12_01720 SM00849 Metallo-beta-lactamase superfamily ACU12_01760 SM01060 ACU12_01760 ACU12_01805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_01865 SM00052 Putative diguanylate phosphodiesterase ACU12_01875 SM00382 ATPases associated with a variety of cellular activities ACU12_01885 SM00938 Nitrogen regulatory protein P-II ACU12_01995 SM00836 DALR anticodon binding domain ACU12_01995 SM01016 Arginyl tRNA synthetase N terminal dom ACU12_02025 SM01259 ACU12_02025 ACU12_02045 SM00470 ParB-like nuclease domain ACU12_02075 SM00271 DnaJ molecular chaperone homology domain ACU12_02090 SM00046 Diacylglycerol kinase catalytic domain (presumed) ACU12_02120 SM00903 Flavin reductase like domain ACU12_02140 SM00100 Cyclic nucleotide-monophosphate binding domain ACU12_02140 SM00419 helix_turn_helix, cAMP Regulatory protein ACU12_02195 SM00073 Histidine Phosphotransfer domain ACU12_02195 SM00387 Histidine kinase-like ATPases ACU12_02195 SM00388 His Kinase A (phosphoacceptor) domain ACU12_02195 SM00448 cheY-homologous receiver domain ACU12_02200 SM00052 Putative diguanylate phosphodiesterase ACU12_02200 SM00267 diguanylate cyclase ACU12_02200 SM00448 cheY-homologous receiver domain ACU12_02250 SM00563 Phosphate acyltransferases ACU12_02280 SM01209 ACU12_02280 ACU12_02280 SM01210 ACU12_02280 ACU12_02285 SM00798 AICARFT/IMPCHase bienzyme ACU12_02285 SM00851 MGS-like domain ACU12_02310 SM00530 Helix-turn-helix XRE-family like proteins ACU12_02335 SM00878 Biotin carboxylase C-terminal domain ACU12_02370 SM00487 DEAD-like helicases superfamily ACU12_02370 SM00490 helicase superfamily c-terminal domain ACU12_02425 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ACU12_02425 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ACU12_02425 SM00493 ACU12_02425 ACU12_02450 SM00257 Lysin motif ACU12_02565 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ACU12_02585 SM00382 ATPases associated with a variety of cellular activities ACU12_02595 SM00530 Helix-turn-helix XRE-family like proteins ACU12_02620 SM00382 ATPases associated with a variety of cellular activities ACU12_02665 SM00530 Helix-turn-helix XRE-family like proteins ACU12_02940 SM01126 ACU12_02940 ACU12_03010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_03020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_03020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_03020 SM00091 PAS domain ACU12_03020 SM00267 diguanylate cyclase ACU12_03065 SM00448 cheY-homologous receiver domain ACU12_03065 SM00850 LytTr DNA-binding domain ACU12_03145 SM00382 ATPases associated with a variety of cellular activities ACU12_03145 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_03180 SM00267 diguanylate cyclase ACU12_03185 SM01263 ACU12_03185 ACU12_03205 SM00268 Actin ACU12_03280 SM00936 Penicillin-binding protein 5, C-terminal domain ACU12_03300 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_03305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_03305 SM00245 tail specific protease ACU12_03355 SM01350 ACU12_03355 ACU12_03365 SM00749 bacterial OsmY and nodulation domain ACU12_03370 SM00387 Histidine kinase-like ATPases ACU12_03370 SM00388 His Kinase A (phosphoacceptor) domain ACU12_03375 SM00448 cheY-homologous receiver domain ACU12_03380 SM00387 Histidine kinase-like ATPases ACU12_03380 SM00388 His Kinase A (phosphoacceptor) domain ACU12_03380 SM00448 cheY-homologous receiver domain ACU12_03430 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACU12_03430 SM00866 ACU12_03430 ACU12_03440 SM00354 helix_turn _helix lactose operon repressor ACU12_03575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_03575 SM00387 Histidine kinase-like ATPases ACU12_03575 SM00388 His Kinase A (phosphoacceptor) domain ACU12_03580 SM00448 cheY-homologous receiver domain ACU12_03580 SM00862 Transcriptional regulatory protein, C terminal ACU12_03595 SM00829 Enoylreductase ACU12_03620 SM00382 ATPases associated with a variety of cellular activities ACU12_03700 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ACU12_03730 SM00387 Histidine kinase-like ATPases ACU12_03730 SM00388 His Kinase A (phosphoacceptor) domain ACU12_03735 SM00448 cheY-homologous receiver domain ACU12_03735 SM00862 Transcriptional regulatory protein, C terminal ACU12_03840 SM00842 Cell division protein FtsA ACU12_03845 SM00864 Tubulin/FtsZ family, GTPase domain ACU12_03845 SM00865 Tubulin/FtsZ family, C-terminal domain ACU12_03865 SM00957 SecA DEAD-like domain ACU12_03865 SM00958 SecA preprotein cross-linking domain ACU12_03895 SM00829 Enoylreductase ACU12_03900 SM00944 Pro-kumamolisin, activation domain ACU12_03950 SM00996 S-adenosyl-L-homocysteine hydrolase ACU12_03950 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACU12_04085 SM00382 ATPases associated with a variety of cellular activities ACU12_04095 SM00448 cheY-homologous receiver domain ACU12_04095 SM00862 Transcriptional regulatory protein, C terminal ACU12_04100 SM00387 Histidine kinase-like ATPases ACU12_04100 SM00388 His Kinase A (phosphoacceptor) domain ACU12_04160 SM00650 Ribosomal RNA adenine dimethylases ACU12_04255 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_04320 SM00448 cheY-homologous receiver domain ACU12_04325 SM00421 helix_turn_helix, Lux Regulon ACU12_04395 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ACU12_04395 SM00475 5'-3' exonuclease ACU12_04410 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ACU12_04410 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ACU12_04525 SM00852 Probable molybdopterin binding domain ACU12_04530 SM00028 Tetratricopeptide repeats ACU12_04535 SM00937 ACU12_04535 ACU12_04545 SM00028 Tetratricopeptide repeats ACU12_04565 SM01400 ACU12_04565 ACU12_04615 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ACU12_04615 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ACU12_04620 SM00649 Ribosomal protein L11/L12 ACU12_04645 SM00663 RNA polymerase I subunit A N-terminus ACU12_04660 SM00838 Elongation factor G C-terminus ACU12_04660 SM00889 Elongation factor G, domain IV ACU12_04675 SM01403 ACU12_04675 ACU12_04695 SM01382 ACU12_04695 ACU12_04695 SM01383 ACU12_04695 ACU12_04710 SM00322 K homology RNA-binding domain ACU12_04730 SM01374 ACU12_04730 ACU12_04735 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ACU12_04795 SM00363 S4 RNA-binding domain ACU12_04795 SM01390 ACU12_04795 ACU12_04800 SM00662 RNA polymerases D ACU12_04840 SM00838 Elongation factor G C-terminus ACU12_04900 SM00829 Enoylreductase ACU12_04945 SM00382 ATPases associated with a variety of cellular activities ACU12_04955 SM00829 Enoylreductase ACU12_04980 SM00855 Phosphoglycerate mutase family ACU12_05030 SM00014 Acid phosphatase homologues ACU12_05050 SM00387 Histidine kinase-like ATPases ACU12_05050 SM00388 His Kinase A (phosphoacceptor) domain ACU12_05055 SM00448 cheY-homologous receiver domain ACU12_05055 SM00862 Transcriptional regulatory protein, C terminal ACU12_05075 SM01329 ACU12_05075 ACU12_05135 SM00382 ATPases associated with a variety of cellular activities ACU12_05135 SM00994 ClpX C4-type zinc finger ACU12_05135 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_05140 SM00382 ATPases associated with a variety of cellular activities ACU12_05140 SM00464 Found in ATP-dependent protease La (LON) ACU12_05145 SM00411 bacterial (prokaryotic) histone like domain ACU12_05170 SM00257 Lysin motif ACU12_05175 SM00849 Metallo-beta-lactamase superfamily ACU12_05190 SM00479 ACU12_05190 ACU12_05195 SM00331 Sigma factor PP2C-like phosphatases ACU12_05195 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ACU12_05220 SM00849 Metallo-beta-lactamase superfamily ACU12_05225 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_05255 SM00382 ATPases associated with a variety of cellular activities ACU12_05265 SM00493 ACU12_05265 ACU12_05280 SM00460 Transglutaminase/protease-like homologues ACU12_05290 SM00382 ATPases associated with a variety of cellular activities ACU12_05330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ACU12_05335 SM00822 ACU12_05335 ACU12_05345 SM00825 Beta-ketoacyl synthase ACU12_05385 SM00382 ATPases associated with a variety of cellular activities ACU12_05455 SM00271 DnaJ molecular chaperone homology domain ACU12_05460 SM00448 cheY-homologous receiver domain ACU12_05465 SM00244 prohibitin homologues ACU12_05470 SM00244 prohibitin homologues ACU12_05480 SM00788 Adenylosuccinate synthetase ACU12_05550 SM00487 DEAD-like helicases superfamily ACU12_05550 SM00490 helicase superfamily c-terminal domain ACU12_05565 SM00487 DEAD-like helicases superfamily ACU12_05595 SM00220 Serine/Threonine protein kinases, catalytic domain ACU12_05620 SM00855 Phosphoglycerate mutase family ACU12_05640 SM00966 SpoVT / AbrB like domain ACU12_05660 SM00481 DNA polymerase alpha chain like domain ACU12_05665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_05695 SM00091 PAS domain ACU12_05695 SM00342 helix_turn_helix, arabinose operon control protein ACU12_05715 SM01060 ACU12_05715 ACU12_05730 SM00990 ACU12_05730 ACU12_05760 SM00382 ATPases associated with a variety of cellular activities ACU12_05800 SM00448 cheY-homologous receiver domain ACU12_05800 SM00862 Transcriptional regulatory protein, C terminal ACU12_05805 SM00387 Histidine kinase-like ATPases ACU12_05805 SM00388 His Kinase A (phosphoacceptor) domain ACU12_05840 SM00421 helix_turn_helix, Lux Regulon ACU12_05840 SM00448 cheY-homologous receiver domain ACU12_05855 SM00478 endonuclease III ACU12_06110 SM00382 ATPases associated with a variety of cellular activities ACU12_06110 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_06265 SM00422 helix_turn_helix, mercury resistance ACU12_06290 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ACU12_06300 SM00849 Metallo-beta-lactamase superfamily ACU12_06325 SM00421 helix_turn_helix, Lux Regulon ACU12_06355 SM00924 MgtE intracellular N domain ACU12_06400 SM00382 ATPases associated with a variety of cellular activities ACU12_06420 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_06555 SM00382 ATPases associated with a variety of cellular activities ACU12_06570 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain ACU12_06605 SM00411 bacterial (prokaryotic) histone like domain ACU12_06620 SM00382 ATPases associated with a variety of cellular activities ACU12_06660 SM00732 Likely ribonuclease with RNase H fold. ACU12_06740 SM00267 diguanylate cyclase ACU12_06745 SM00829 Enoylreductase ACU12_06760 SM01092 CO dehydrogenase flavoprotein C-terminal domain ACU12_06765 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACU12_06910 SM00855 Phosphoglycerate mutase family ACU12_06990 SM00448 cheY-homologous receiver domain ACU12_06995 SM00138 Methyltransferase, chemotaxis proteins ACU12_07000 SM00052 Putative diguanylate phosphodiesterase ACU12_07000 SM00448 cheY-homologous receiver domain ACU12_07005 SM00260 Two component signalling adaptor domain ACU12_07010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_07010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_07015 SM00073 Histidine Phosphotransfer domain ACU12_07015 SM00260 Two component signalling adaptor domain ACU12_07015 SM00387 Histidine kinase-like ATPases ACU12_07015 SM01231 ACU12_07015 ACU12_07025 SM00487 DEAD-like helicases superfamily ACU12_07025 SM00490 helicase superfamily c-terminal domain ACU12_07025 SM00982 ACU12_07025 ACU12_07025 SM01058 CarD-like/TRCF domain ACU12_07045 SM00645 Papain family cysteine protease ACU12_07125 SM00829 Enoylreductase ACU12_07190 SM00487 DEAD-like helicases superfamily ACU12_07190 SM00490 helicase superfamily c-terminal domain ACU12_07195 SM00052 Putative diguanylate phosphodiesterase ACU12_07195 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_07195 SM00091 PAS domain ACU12_07195 SM00267 diguanylate cyclase ACU12_07200 SM00363 S4 RNA-binding domain ACU12_07230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_07230 SM00387 Histidine kinase-like ATPases ACU12_07230 SM00388 His Kinase A (phosphoacceptor) domain ACU12_07235 SM00448 cheY-homologous receiver domain ACU12_07235 SM00862 Transcriptional regulatory protein, C terminal ACU12_07265 SM00382 ATPases associated with a variety of cellular activities ACU12_07395 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_07445 SM01351 ACU12_07445 ACU12_07460 SM00977 TilS substrate C-terminal domain ACU12_07465 SM00098 Alkaline phosphatase homologues ACU12_07570 SM01160 ACU12_07570 ACU12_07585 SM01126 ACU12_07585 ACU12_07665 SM00271 DnaJ molecular chaperone homology domain ACU12_07690 SM00382 ATPases associated with a variety of cellular activities ACU12_07715 SM00861 Transketolase, pyrimidine binding domain ACU12_07725 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ACU12_07730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_07785 SM00382 ATPases associated with a variety of cellular activities ACU12_07790 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACU12_07810 SM00984 UDP binding domain ACU12_07830 SM00354 helix_turn _helix lactose operon repressor ACU12_07860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ACU12_07885 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_07885 SM00357 Cold shock protein domain ACU12_07885 SM00955 ACU12_07885 ACU12_07895 SM00967 RNA 2'-O ribose methyltransferase substrate binding ACU12_07900 SM00267 diguanylate cyclase ACU12_07905 SM00479 ACU12_07905 ACU12_07920 SM00382 ATPases associated with a variety of cellular activities ACU12_07955 SM00947 Carbonic anhydrase ACU12_07965 SM00478 endonuclease III ACU12_07990 SM00450 Rhodanese Homology Domain ACU12_08000 SM00644 ACU12_08000 ACU12_08030 SM00981 ACU12_08030 ACU12_08060 SM00479 ACU12_08060 ACU12_08085 SM00947 Carbonic anhydrase ACU12_08135 SM00968 SMC proteins Flexible Hinge Domain ACU12_08140 SM00771 ZipA, C-terminal domain (FtsZ-binding) ACU12_08150 SM00292 breast cancer carboxy-terminal domain ACU12_08150 SM00532 Ligase N family ACU12_08170 SM00434 DNA Topoisomerase IV ACU12_08300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_08300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_08475 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_08485 SM00382 ATPases associated with a variety of cellular activities ACU12_08510 SM01091 Transporter associated domain ACU12_08535 SM00387 Histidine kinase-like ATPases ACU12_08535 SM00433 TopoisomeraseII ACU12_08560 SM01192 ACU12_08560 ACU12_08560 SM01193 ACU12_08560 ACU12_08585 SM00463 Small MutS-related domain ACU12_08605 SM00257 Lysin motif ACU12_08615 SM01103 ACU12_08615 ACU12_08625 SM00382 ATPases associated with a variety of cellular activities ACU12_08665 SM00382 ATPases associated with a variety of cellular activities ACU12_08675 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACU12_08725 SM01234 ACU12_08725 ACU12_08755 SM00840 ACU12_08755 ACU12_08795 SM00859 Semialdehyde dehydrogenase, NAD binding domain ACU12_08815 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ACU12_08825 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ACU12_08860 SM00382 ATPases associated with a variety of cellular activities ACU12_08865 SM00382 ATPases associated with a variety of cellular activities ACU12_08920 SM00382 ATPases associated with a variety of cellular activities ACU12_08945 SM00363 S4 RNA-binding domain ACU12_08970 SM00354 helix_turn _helix lactose operon repressor ACU12_09040 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_09045 SM00411 bacterial (prokaryotic) histone like domain ACU12_09065 SM00822 ACU12_09065 ACU12_09095 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_09095 SM01240 ACU12_09095 ACU12_09150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_09165 SM00529 Helix-turn-helix diphteria tox regulatory element ACU12_09175 SM00479 ACU12_09175 ACU12_09245 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_09245 SM00732 Likely ribonuclease with RNase H fold. ACU12_09250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_09250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_09250 SM00091 PAS domain ACU12_09250 SM00387 Histidine kinase-like ATPases ACU12_09250 SM00388 His Kinase A (phosphoacceptor) domain ACU12_09250 SM00448 cheY-homologous receiver domain ACU12_09255 SM00448 cheY-homologous receiver domain ACU12_09400 SM00382 ATPases associated with a variety of cellular activities ACU12_09450 SM00382 ATPases associated with a variety of cellular activities ACU12_09465 SM00849 Metallo-beta-lactamase superfamily ACU12_09480 SM00382 ATPases associated with a variety of cellular activities ACU12_09495 SM00226 Low molecular weight phosphatase family ACU12_09505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACU12_09505 SM00465 GIY-YIG type nucleases (URI domain) ACU12_09545 SM01126 ACU12_09545 ACU12_09555 SM00823 Phosphopantetheine attachment site ACU12_09555 SM00824 Thioesterase ACU12_09570 SM00984 UDP binding domain ACU12_09590 SM00450 Rhodanese Homology Domain ACU12_09595 SM00421 helix_turn_helix, Lux Regulon ACU12_09595 SM00448 cheY-homologous receiver domain ACU12_09600 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_09605 SM00363 S4 RNA-binding domain ACU12_09715 SM00382 ATPases associated with a variety of cellular activities ACU12_09715 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_09745 SM00240 Forkhead associated domain ACU12_09770 SM00331 Sigma factor PP2C-like phosphatases ACU12_09770 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ACU12_09795 SM00387 Histidine kinase-like ATPases ACU12_09805 SM00448 cheY-homologous receiver domain ACU12_09805 SM00862 Transcriptional regulatory protein, C terminal ACU12_10055 SM00869 Autotransporter beta-domain ACU12_10075 SM00387 Histidine kinase-like ATPases ACU12_10075 SM00388 His Kinase A (phosphoacceptor) domain ACU12_10080 SM00421 helix_turn_helix, Lux Regulon ACU12_10080 SM00448 cheY-homologous receiver domain ACU12_10085 SM00869 Autotransporter beta-domain ACU12_10095 SM00052 Putative diguanylate phosphodiesterase ACU12_10170 SM00852 Probable molybdopterin binding domain ACU12_10205 SM00450 Rhodanese Homology Domain ACU12_10215 SM00852 Probable molybdopterin binding domain ACU12_10220 SM00382 ATPases associated with a variety of cellular activities ACU12_10225 SM00564 beta-propeller repeat ACU12_10240 SM00028 Tetratricopeptide repeats ACU12_10250 SM00562 ACU12_10250 ACU12_10290 SM00382 ATPases associated with a variety of cellular activities ACU12_10310 SM00382 ATPases associated with a variety of cellular activities ACU12_10310 SM00843 ACU12_10310 ACU12_10340 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_10345 SM00382 ATPases associated with a variety of cellular activities ACU12_10345 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_10370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10385 SM00052 Putative diguanylate phosphodiesterase ACU12_10385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_10385 SM00091 PAS domain ACU12_10385 SM00267 diguanylate cyclase ACU12_10390 SM00091 PAS domain ACU12_10390 SM00387 Histidine kinase-like ATPases ACU12_10395 SM00052 Putative diguanylate phosphodiesterase ACU12_10395 SM00267 diguanylate cyclase ACU12_10395 SM00448 cheY-homologous receiver domain ACU12_10400 SM00387 Histidine kinase-like ATPases ACU12_10415 SM00858 ACU12_10415 ACU12_10420 SM00260 Two component signalling adaptor domain ACU12_10420 SM00448 cheY-homologous receiver domain ACU12_10465 SM00047 Lysozyme subfamily 2 ACU12_10505 SM00421 helix_turn_helix, Lux Regulon ACU12_10505 SM00448 cheY-homologous receiver domain ACU12_10515 SM00448 cheY-homologous receiver domain ACU12_10520 SM00382 ATPases associated with a variety of cellular activities ACU12_10540 SM00822 ACU12_10540 ACU12_10565 SM01126 ACU12_10565 ACU12_10595 SM00382 ATPases associated with a variety of cellular activities ACU12_10645 SM00267 diguanylate cyclase ACU12_10650 SM00267 diguanylate cyclase ACU12_10655 SM00052 Putative diguanylate phosphodiesterase ACU12_10655 SM00267 diguanylate cyclase ACU12_10670 SM00382 ATPases associated with a variety of cellular activities ACU12_10670 SM00962 SRP54-type protein, GTPase domain ACU12_10685 SM00448 cheY-homologous receiver domain ACU12_10695 SM00073 Histidine Phosphotransfer domain ACU12_10695 SM00260 Two component signalling adaptor domain ACU12_10695 SM00387 Histidine kinase-like ATPases ACU12_10695 SM01231 ACU12_10695 ACU12_10725 SM01126 ACU12_10725 ACU12_10785 SM00260 Two component signalling adaptor domain ACU12_10795 SM00448 cheY-homologous receiver domain ACU12_10800 SM00073 Histidine Phosphotransfer domain ACU12_10800 SM00260 Two component signalling adaptor domain ACU12_10800 SM00387 Histidine kinase-like ATPases ACU12_10800 SM01231 ACU12_10800 ACU12_10805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10875 SM00260 Two component signalling adaptor domain ACU12_10885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_10885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_10890 SM00138 Methyltransferase, chemotaxis proteins ACU12_10900 SM00448 cheY-homologous receiver domain ACU12_10905 SM00052 Putative diguanylate phosphodiesterase ACU12_10905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_10905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_10905 SM00091 PAS domain ACU12_10905 SM00267 diguanylate cyclase ACU12_10925 SM00966 SpoVT / AbrB like domain ACU12_10950 SM00073 Histidine Phosphotransfer domain ACU12_10950 SM00387 Histidine kinase-like ATPases ACU12_10950 SM00388 His Kinase A (phosphoacceptor) domain ACU12_10950 SM00448 cheY-homologous receiver domain ACU12_10955 SM00448 cheY-homologous receiver domain ACU12_10955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_10965 SM00937 ACU12_10965 ACU12_11000 SM00851 MGS-like domain ACU12_11000 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACU12_11010 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ACU12_11050 SM00899 ACU12_11050 ACU12_11070 SM00822 ACU12_11070 ACU12_11075 SM00841 Elongation factor P, C-terminal ACU12_11075 SM01185 ACU12_11075 ACU12_11085 SM01126 ACU12_11085 ACU12_11125 SM01007 Class II Aldolase and Adducin N-terminal domain ACU12_11315 SM00014 Acid phosphatase homologues ACU12_11325 SM00387 Histidine kinase-like ATPases ACU12_11330 SM00448 cheY-homologous receiver domain ACU12_11340 SM00052 Putative diguanylate phosphodiesterase ACU12_11340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_11340 SM00267 diguanylate cyclase ACU12_11410 SM00646 ACU12_11410 ACU12_11455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ACU12_11480 SM01130 ACU12_11480 ACU12_11500 SM00670 Large family of predicted nucleotide-binding domains ACU12_11545 SM00507 HNH nucleases ACU12_11595 SM00841 Elongation factor P, C-terminal ACU12_11595 SM01185 ACU12_11595 ACU12_11605 SM00052 Putative diguanylate phosphodiesterase ACU12_11605 SM00267 diguanylate cyclase ACU12_11605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_11645 SM00382 ATPases associated with a variety of cellular activities ACU12_11650 SM00382 ATPases associated with a variety of cellular activities ACU12_11650 SM00487 DEAD-like helicases superfamily ACU12_11650 SM00490 helicase superfamily c-terminal domain ACU12_11675 SM00357 Cold shock protein domain ACU12_11685 SM01322 ACU12_11685 ACU12_11695 SM00052 Putative diguanylate phosphodiesterase ACU12_11695 SM00267 diguanylate cyclase ACU12_11710 SM00822 ACU12_11710 ACU12_11730 SM00853 MutL C terminal dimerisation domain ACU12_11730 SM01340 ACU12_11730 ACU12_11770 SM00474 3'-5' exonuclease ACU12_11785 SM00528 Domain in histone-like proteins of HNS family ACU12_11925 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_11925 SM00267 diguanylate cyclase ACU12_11930 SM00260 Two component signalling adaptor domain ACU12_11935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_11935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_11995 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_12020 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_12020 SM01091 Transporter associated domain ACU12_12050 SM00382 ATPases associated with a variety of cellular activities ACU12_12080 SM01126 ACU12_12080 ACU12_12140 SM01230 ACU12_12140 ACU12_12150 SM01230 ACU12_12150 ACU12_12160 SM00267 diguanylate cyclase ACU12_12160 SM00448 cheY-homologous receiver domain ACU12_12205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_12205 SM00091 PAS domain ACU12_12205 SM00387 Histidine kinase-like ATPases ACU12_12205 SM00388 His Kinase A (phosphoacceptor) domain ACU12_12205 SM00448 cheY-homologous receiver domain ACU12_12205 SM01079 ACU12_12205 ACU12_12210 SM00448 cheY-homologous receiver domain ACU12_12210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_12250 SM00354 helix_turn _helix lactose operon repressor ACU12_12330 SM01323 ACU12_12330 ACU12_12345 SM00344 helix_turn_helix ASNC type ACU12_12420 SM00387 Histidine kinase-like ATPases ACU12_12490 SM00944 Pro-kumamolisin, activation domain ACU12_12555 SM01130 ACU12_12555 ACU12_12580 SM00342 helix_turn_helix, arabinose operon control protein ACU12_12585 SM00382 ATPases associated with a variety of cellular activities ACU12_12585 SM00962 SRP54-type protein, GTPase domain ACU12_12585 SM00963 SRP54-type protein, helical bundle domain ACU12_12595 SM00478 endonuclease III ACU12_12605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_12605 SM00091 PAS domain ACU12_12605 SM00387 Histidine kinase-like ATPases ACU12_12605 SM00388 His Kinase A (phosphoacceptor) domain ACU12_12605 SM00448 cheY-homologous receiver domain ACU12_12650 SM00507 HNH nucleases ACU12_12655 SM00861 Transketolase, pyrimidine binding domain ACU12_12740 SM00422 helix_turn_helix, mercury resistance ACU12_12745 SM00411 bacterial (prokaryotic) histone like domain ACU12_12750 SM00873 B3/4 domain ACU12_12750 SM00874 tRNA synthetase B5 domain ACU12_12750 SM00896 Ferredoxin-fold anticodon binding domain ACU12_12775 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ACU12_12825 SM00830 Chorismate mutase type II ACU12_12850 SM00240 Forkhead associated domain ACU12_12870 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACU12_12870 SM00866 ACU12_12870 ACU12_12930 SM00487 DEAD-like helicases superfamily ACU12_12930 SM00490 helicase superfamily c-terminal domain ACU12_13145 SM00530 Helix-turn-helix XRE-family like proteins ACU12_13285 SM01001 AIR carboxylase ACU12_13305 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_13305 SM00322 K homology RNA-binding domain ACU12_13310 SM01387 ACU12_13310 ACU12_13330 SM00316 Ribosomal protein S1-like RNA-binding domain ACU12_13330 SM00322 K homology RNA-binding domain ACU12_13380 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACU12_13385 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACU12_13430 SM00822 ACU12_13430 ACU12_13450 SM00052 Putative diguanylate phosphodiesterase ACU12_13450 SM00267 diguanylate cyclase ACU12_13450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ACU12_13515 SM00859 Semialdehyde dehydrogenase, NAD binding domain ACU12_13545 SM00257 Lysin motif ACU12_13590 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_13635 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_13635 SM00267 diguanylate cyclase ACU12_13645 SM00267 diguanylate cyclase ACU12_13740 SM00357 Cold shock protein domain ACU12_13770 SM00382 ATPases associated with a variety of cellular activities ACU12_13820 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_13850 SM00631 ACU12_13850 ACU12_13855 SM01217 ACU12_13855 ACU12_13890 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_13895 SM00342 helix_turn_helix, arabinose operon control protein ACU12_13900 SM00434 DNA Topoisomerase IV ACU12_13920 SM00710 Parallel beta-helix repeats ACU12_13920 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses ACU12_13925 SM01172 ACU12_13925 ACU12_13955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_13965 SM00972 Spore Coat Protein U domain ACU12_13980 SM00972 Spore Coat Protein U domain ACU12_14005 SM00267 diguanylate cyclase ACU12_14035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_14075 SM00481 DNA polymerase alpha chain like domain ACU12_14385 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACU12_14390 SM00869 Autotransporter beta-domain ACU12_14440 SM00487 DEAD-like helicases superfamily ACU12_14440 SM00490 helicase superfamily c-terminal domain ACU12_14455 SM00357 Cold shock protein domain ACU12_14490 SM01118 ACU12_14490 ACU12_14500 SM00448 cheY-homologous receiver domain ACU12_14515 SM00358 Double-stranded RNA binding motif ACU12_14515 SM00535 Ribonuclease III family ACU12_14530 SM00838 Elongation factor G C-terminus ACU12_14535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_14585 SM00530 Helix-turn-helix XRE-family like proteins ACU12_14610 SM00812 Alpha-L-fucosidase ACU12_14625 SM00387 Histidine kinase-like ATPases ACU12_14625 SM00388 His Kinase A (phosphoacceptor) domain ACU12_14625 SM00448 cheY-homologous receiver domain ACU12_14630 SM00387 Histidine kinase-like ATPases ACU12_14630 SM00388 His Kinase A (phosphoacceptor) domain ACU12_14630 SM00448 cheY-homologous receiver domain ACU12_14635 SM00387 Histidine kinase-like ATPases ACU12_14635 SM00388 His Kinase A (phosphoacceptor) domain ACU12_14635 SM00448 cheY-homologous receiver domain ACU12_14645 SM00387 Histidine kinase-like ATPases ACU12_14645 SM00388 His Kinase A (phosphoacceptor) domain ACU12_14645 SM00448 cheY-homologous receiver domain ACU12_14650 SM00867 YceI-like domain ACU12_14660 SM00867 YceI-like domain ACU12_14730 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_14810 SM00244 prohibitin homologues ACU12_14855 SM00812 Alpha-L-fucosidase ACU12_14860 SM00636 ACU12_14860 ACU12_14875 SM00758 ACU12_14875 ACU12_14875 SM01217 ACU12_14875 ACU12_14880 SM00382 ATPases associated with a variety of cellular activities ACU12_14890 SM01149 ACU12_14890 ACU12_14930 SM00369 Leucine-rich repeats, typical (most populated) subfamily ACU12_14955 SM01126 ACU12_14955 ACU12_14965 SM00260 Two component signalling adaptor domain ACU12_14975 SM00073 Histidine Phosphotransfer domain ACU12_14975 SM00260 Two component signalling adaptor domain ACU12_14975 SM00387 Histidine kinase-like ATPases ACU12_14975 SM00448 cheY-homologous receiver domain ACU12_14975 SM01231 ACU12_14975 ACU12_14980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_14985 SM00260 Two component signalling adaptor domain ACU12_14990 SM00448 cheY-homologous receiver domain ACU12_14995 SM00448 cheY-homologous receiver domain ACU12_15020 SM00491 ACU12_15020 ACU12_15045 SM00954 Region found in RelA / SpoT proteins ACU12_15100 SM00382 ATPases associated with a variety of cellular activities ACU12_15100 SM00487 DEAD-like helicases superfamily ACU12_15100 SM00490 helicase superfamily c-terminal domain ACU12_15100 SM00847 Helicase associated domain (HA2) Add an annotation ACU12_15110 SM00341 Helicase and RNase D C-terminal ACU12_15110 SM00487 DEAD-like helicases superfamily ACU12_15110 SM00490 helicase superfamily c-terminal domain ACU12_15110 SM00956 ACU12_15110 ACU12_15120 SM00448 cheY-homologous receiver domain ACU12_15135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_15150 SM00091 PAS domain ACU12_15150 SM00911 HWE histidine kinase ACU12_15210 SM00382 ATPases associated with a variety of cellular activities ACU12_15220 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ACU12_15255 SM00834 Putative regulatory protein ACU12_15295 SM00382 ATPases associated with a variety of cellular activities ACU12_15435 SM00382 ATPases associated with a variety of cellular activities ACU12_15435 SM01086 C-terminal, D2-small domain, of ClpB protein ACU12_15450 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ACU12_15450 SM00534 ATPase domain of DNA mismatch repair MUTS family ACU12_15465 SM00363 S4 RNA-binding domain ACU12_15520 SM00382 ATPases associated with a variety of cellular activities ACU12_15520 SM00962 SRP54-type protein, GTPase domain ACU12_15520 SM00963 SRP54-type protein, helical bundle domain ACU12_15535 SM00813 Alpha-L-arabinofuranosidase C-terminus ACU12_15550 SM00387 Histidine kinase-like ATPases ACU12_15550 SM00388 His Kinase A (phosphoacceptor) domain ACU12_15550 SM00448 cheY-homologous receiver domain ACU12_15555 SM00387 Histidine kinase-like ATPases ACU12_15555 SM00388 His Kinase A (phosphoacceptor) domain ACU12_15595 SM00342 helix_turn_helix, arabinose operon control protein ACU12_15600 SM00862 Transcriptional regulatory protein, C terminal ACU12_15610 SM01126 ACU12_15610 ACU12_15615 SM00382 ATPases associated with a variety of cellular activities ACU12_15685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ACU12_15730 SM00904 Riboflavin kinase ACU12_15865 SM00564 beta-propeller repeat ACU12_15870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ACU12_15910 SM00881 CoA binding domain ACU12_15920 SM00387 Histidine kinase-like ATPases ACU12_15920 SM00388 His Kinase A (phosphoacceptor) domain ACU12_16020 SM00387 Histidine kinase-like ATPases ACU12_16020 SM00388 His Kinase A (phosphoacceptor) domain ACU12_16025 SM00448 cheY-homologous receiver domain ACU12_16025 SM00862 Transcriptional regulatory protein, C terminal ACU12_16040 SM00642 Alpha-amylase domain ACU12_16060 SM00528 Domain in histone-like proteins of HNS family ACU12_16115 SM00869 Autotransporter beta-domain ACU12_16180 SM00967 RNA 2'-O ribose methyltransferase substrate binding ACU12_16255 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_16255 SM00387 Histidine kinase-like ATPases ACU12_16290 SM00506 Appr-1"-p processing enzyme ACU12_16320 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACU12_16340 SM00849 Metallo-beta-lactamase superfamily ACU12_16355 SM00382 ATPases associated with a variety of cellular activities ACU12_16455 SM00861 Transketolase, pyrimidine binding domain ACU12_16490 SM00028 Tetratricopeptide repeats ACU12_16490 SM00327 von Willebrand factor (vWF) type A domain ACU12_16495 SM00327 von Willebrand factor (vWF) type A domain ACU12_16510 SM00382 ATPases associated with a variety of cellular activities ACU12_16515 SM00965 Secretin and TonB N terminus short domain ACU12_16565 SM00487 DEAD-like helicases superfamily ACU12_16565 SM00490 helicase superfamily c-terminal domain ACU12_16575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ACU12_16575 SM00954 Region found in RelA / SpoT proteins ACU12_16580 SM01409 ACU12_16580 ACU12_16585 SM00072 Guanylate kinase homologues. ACU12_16610 SM00729 Elongator protein 3, MiaB family, Radical SAM ACU12_16635 SM01011 Aminopeptidase P, N-terminal domain ACU12_16795 SM00464 Found in ATP-dependent protease La (LON) ACU12_16865 SM00342 helix_turn_helix, arabinose operon control protein ACU12_16870 SM00862 Transcriptional regulatory protein, C terminal ACU12_16900 SM00917 LeuA allosteric (dimerisation) domain ACU12_16905 SM01329 ACU12_16905 ACU12_16930 SM00267 diguanylate cyclase ACU12_16985 SM00919 Malic enzyme, NAD binding domain ACU12_16985 SM01274 ACU12_16985 ACU12_17000 SM00387 Histidine kinase-like ATPases ACU12_17000 SM00388 His Kinase A (phosphoacceptor) domain ACU12_17000 SM00448 cheY-homologous receiver domain ACU12_17040 SM00421 helix_turn_helix, Lux Regulon ACU12_17040 SM00448 cheY-homologous receiver domain ACU12_17050 SM00387 Histidine kinase-like ATPases ACU12_17050 SM00388 His Kinase A (phosphoacceptor) domain ACU12_17055 SM00448 cheY-homologous receiver domain ACU12_17055 SM00862 Transcriptional regulatory protein, C terminal ACU12_17070 SM00822 ACU12_17070 ACU12_17075 SM00354 helix_turn _helix lactose operon repressor ACU12_17090 SM00642 Alpha-amylase domain ACU12_17100 SM01154 ACU12_17100 ACU12_17130 SM00450 Rhodanese Homology Domain ACU12_17140 SM00506 Appr-1"-p processing enzyme ACU12_17235 SM00345 helix_turn_helix gluconate operon transcriptional repressor ACU12_17235 SM00866 ACU12_17235 ACU12_17300 SM00382 ATPases associated with a variety of cellular activities ACU12_17315 SM01211 ACU12_17315 ACU12_17375 SM00656 ACU12_17375 ACU12_17405 SM00528 Domain in histone-like proteins of HNS family ACU12_17420 SM00382 ATPases associated with a variety of cellular activities ACU12_17450 SM00882 Coenzyme A transferase ACU12_17455 SM00882 Coenzyme A transferase ACU12_17490 SM00893 Electron transfer flavoprotein domain ACU12_17495 SM00893 Electron transfer flavoprotein domain ACU12_17575 SM00382 ATPases associated with a variety of cellular activities ACU12_17590 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_17630 SM00487 DEAD-like helicases superfamily ACU12_17630 SM00490 helicase superfamily c-terminal domain ACU12_17650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_17675 SM00825 Beta-ketoacyl synthase ACU12_17750 SM00382 ATPases associated with a variety of cellular activities ACU12_17775 SM00382 ATPases associated with a variety of cellular activities ACU12_17775 SM00448 cheY-homologous receiver domain ACU12_17780 SM00387 Histidine kinase-like ATPases ACU12_17795 SM00830 Chorismate mutase type II ACU12_17805 SM00382 ATPases associated with a variety of cellular activities ACU12_17875 SM00986 Uracil DNA glycosylase superfamily ACU12_17875 SM00987 UreE urease accessory protein, C-terminal domain ACU12_17905 SM00382 ATPases associated with a variety of cellular activities ACU12_17905 SM00930 ACU12_17905 ACU12_17980 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ACU12_17980 SM00091 PAS domain ACU12_17980 SM00387 Histidine kinase-like ATPases ACU12_17980 SM00388 His Kinase A (phosphoacceptor) domain ACU12_17980 SM00448 cheY-homologous receiver domain ACU12_18000 SM01005 Alanine racemase, C-terminal domain ACU12_18010 SM00344 helix_turn_helix ASNC type ACU12_18050 SM00448 cheY-homologous receiver domain ACU12_18050 SM00862 Transcriptional regulatory protein, C terminal ACU12_18055 SM00387 Histidine kinase-like ATPases ACU12_18055 SM00388 His Kinase A (phosphoacceptor) domain ACU12_18085 SM00382 ATPases associated with a variety of cellular activities ACU12_18095 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. ACU12_18100 SM00986 Uracil DNA glycosylase superfamily ACU12_18100 SM00987 UreE urease accessory protein, C-terminal domain ACU12_18165 SM00448 cheY-homologous receiver domain ACU12_18165 SM00850 LytTr DNA-binding domain ACU12_18170 SM00387 Histidine kinase-like ATPases ACU12_18185 SM00138 Methyltransferase, chemotaxis proteins ACU12_18190 SM00448 cheY-homologous receiver domain ACU12_18200 SM00382 ATPases associated with a variety of cellular activities ACU12_18200 SM00448 cheY-homologous receiver domain ACU12_18285 SM00382 ATPases associated with a variety of cellular activities ACU12_18315 SM00867 YceI-like domain ACU12_18400 SM00883 Chaperonin 10 Kd subunit ACU12_18440 SM00986 Uracil DNA glycosylase superfamily ACU12_18440 SM00987 UreE urease accessory protein, C-terminal domain ACU12_18445 SM00448 cheY-homologous receiver domain ACU12_18455 SM00382 ATPases associated with a variety of cellular activities ACU12_18460 SM00487 DEAD-like helicases superfamily ACU12_18460 SM00490 helicase superfamily c-terminal domain ACU12_18470 SM00357 Cold shock protein domain ACU12_18470 SM00382 ATPases associated with a variety of cellular activities ACU12_18470 SM00959 Rho termination factor, N-terminal domain ACU12_18545 SM01126 ACU12_18545 ACU12_18550 SM01150 ACU12_18550 ACU12_18595 SM00644 ACU12_18595 ACU12_18605 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ACU12_18645 SM01217 ACU12_18645 ACU12_18650 SM00905 Dihydroneopterin aldolase ACU12_18675 SM00400 zinc finger ACU12_18675 SM00493 ACU12_18675 ACU12_18675 SM00766 DNA primase DnaG DnaB-binding ACU12_18910 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_18940 SM00861 Transketolase, pyrimidine binding domain ACU12_18945 SM00326 Src homology 3 domains ACU12_18975 SM00487 DEAD-like helicases superfamily ACU12_18975 SM00490 helicase superfamily c-terminal domain ACU12_19075 SM00881 CoA binding domain ACU12_19085 SM00116 Domain in cystathionine beta-synthase and other proteins. ACU12_19085 SM00924 MgtE intracellular N domain ACU12_19120 SM00226 Low molecular weight phosphatase family ACU12_19125 SM00248 ankyrin repeats ACU12_19135 SM00825 Beta-ketoacyl synthase ACU12_19155 SM01126 ACU12_19155 ACU12_19165 SM00822 ACU12_19165 ACU12_19215 SM00563 Phosphate acyltransferases ACU12_19275 SM01126 ACU12_19275 ACU12_19280 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ACU12_19280 SM00474 3'-5' exonuclease ACU12_19280 SM00475 5'-3' exonuclease ACU12_19280 SM00482 DNA polymerase A domain ACU12_19310 SM00342 helix_turn_helix, arabinose operon control protein ACU12_19350 SM00155 Phospholipase D. Active site motifs. ACU12_19455 SM00421 helix_turn_helix, Lux Regulon ACU12_19455 SM00448 cheY-homologous receiver domain ACU12_19475 SM00346 helix_turn_helix isocitrate lyase regulation ACU12_19485 SM00091 PAS domain ACU12_19485 SM00387 Histidine kinase-like ATPases ACU12_19485 SM00388 His Kinase A (phosphoacceptor) domain ACU12_19485 SM00448 cheY-homologous receiver domain ACU12_19515 SM00564 beta-propeller repeat ACU12_19525 SM01321 ACU12_19525 ACU12_19545 SM00563 Phosphate acyltransferases ACU12_19665 SM00382 ATPases associated with a variety of cellular activities ACU12_19665 SM00448 cheY-homologous receiver domain ACU12_19670 SM00387 Histidine kinase-like ATPases ACU12_19670 SM00388 His Kinase A (phosphoacceptor) domain ACU12_19695 SM00450 Rhodanese Homology Domain ACU12_19780 SM00382 ATPases associated with a variety of cellular activities ACU12_19780 SM00448 cheY-homologous receiver domain ACU12_19785 SM00387 Histidine kinase-like ATPases ACU12_19785 SM00388 His Kinase A (phosphoacceptor) domain ACU12_19795 SM00938 Nitrogen regulatory protein P-II ACU12_19800 SM01230 ACU12_19800 ACU12_19825 SM00028 Tetratricopeptide repeats ACU12_19840 SM00563 Phosphate acyltransferases ACU12_19850 SM00155 Phospholipase D. Active site motifs. ACU12_19855 SM00867 YceI-like domain ACU12_19860 SM00855 Phosphoglycerate mutase family ACU12_19885 SM00530 Helix-turn-helix XRE-family like proteins ACU12_19915 SM00382 ATPases associated with a variety of cellular activities ACU12_19930 SM00382 ATPases associated with a variety of cellular activities ACU12_19955 SM00344 helix_turn_helix ASNC type ACU12_19980 SM00354 helix_turn _helix lactose operon repressor ACU12_19995 SM00642 Alpha-amylase domain ACU12_20000 SM00642 Alpha-amylase domain ACU12_20005 SM00642 Alpha-amylase domain ACU12_20070 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_20070 SM00091 PAS domain ACU12_20140 SM00347 helix_turn_helix multiple antibiotic resistance protein ACU12_20365 SM01126 ACU12_20365 ACU12_20385 SM00487 DEAD-like helicases superfamily ACU12_20385 SM00490 helicase superfamily c-terminal domain ACU12_20505 SM00382 ATPases associated with a variety of cellular activities ACU12_20525 SM00869 Autotransporter beta-domain ACU12_20550 SM00530 Helix-turn-helix XRE-family like proteins ACU12_20610 SM01126 ACU12_20610 ACU12_20655 SM00822 ACU12_20655 ACU12_20735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ACU12_20735 SM00091 PAS domain ACU12_20735 SM00267 diguanylate cyclase ACU12_20790 SM00014 Acid phosphatase homologues ACU12_20800 SM00028 Tetratricopeptide repeats