locus-tag class description XPE_00030 PF02547 Queuosine biosynthesis protein XPE_00035 PF01702 Queuine tRNA-ribosyltransferase XPE_00040 PF02699 Preprotein translocase subunit XPE_00045 PF02355 Protein export membrane protein XPE_00045 PF13721 SecD export protein N-terminal TM region XPE_00045 PF07549 SecD/SecF GG Motif XPE_00050 PF02355 Protein export membrane protein XPE_00050 PF07549 SecD/SecF GG Motif XPE_00100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XPE_00105 PF00294 pfkB family carbohydrate kinase XPE_00110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XPE_00110 PF00381 PTS HPr component phosphorylation site XPE_00110 PF02896 PEP-utilising enzyme, TIM barrel domain XPE_00110 PF00391 PEP-utilising enzyme, mobile domain XPE_00110 PF05524 PEP-utilising enzyme, N-terminal XPE_00115 PF00356 Bacterial regulatory proteins, lacI family XPE_00120 PF00873 AcrB/AcrD/AcrF family XPE_00125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_00125 PF00529 HlyD membrane-fusion protein of T1SS XPE_00135 PF05088 Bacterial NAD-glutamate dehydrogenase XPE_00140 PF07690 Major Facilitator Superfamily XPE_00145 PF00072 Response regulator receiver domain XPE_00150 PF00512 His Kinase A (phospho-acceptor) domain XPE_00150 PF01627 Hpt domain XPE_00150 PF00072 Response regulator receiver domain XPE_00150 PF00672 HAMP domain XPE_00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_00150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XPE_00155 PF04286 Protein of unknown function (DUF445) XPE_00165 PF00202 Aminotransferase class-III XPE_00175 PF07690 Major Facilitator Superfamily XPE_00180 PF02634 FdhD/NarQ family XPE_00185 PF00384 Molybdopterin oxidoreductase XPE_00195 PF00083 Sugar (and other) transporter XPE_00195 PF07690 Major Facilitator Superfamily XPE_00200 PF01814 Hemerythrin HHE cation binding domain XPE_00205 PF00990 Diguanylate cyclase, GGDEF domain XPE_00205 PF00072 Response regulator receiver domain XPE_00210 PF01266 FAD dependent oxidoreductase XPE_00215 PF00120 Glutamine synthetase, catalytic domain XPE_00220 PF07722 Peptidase C26 XPE_00225 PF00120 Glutamine synthetase, catalytic domain XPE_00230 PF00202 Aminotransferase class-III XPE_00235 PF13416 Bacterial extracellular solute-binding protein XPE_00240 PF13533 Biotin-lipoyl like XPE_00245 PF07690 Major Facilitator Superfamily XPE_00250 PF02321 Outer membrane efflux protein XPE_00255 PF08402 TOBE domain XPE_00255 PF00005 ABC transporter XPE_00265 PF00528 Binding-protein-dependent transport system inner membrane component XPE_00270 PF00528 Binding-protein-dependent transport system inner membrane component XPE_00275 PF00171 Aldehyde dehydrogenase family XPE_00290 PF03471 Transporter associated domain XPE_00290 PF00571 CBS domain XPE_00300 PF02130 Uncharacterized protein family UPF0054 XPE_00310 PF02562 PhoH-like protein XPE_00315 PF00919 Uncharacterized protein family UPF0004 XPE_00315 PF01938 TRAM domain XPE_00315 PF04055 Radical SAM superfamily XPE_00330 PF01464 Transglycosylase SLT domain XPE_00340 PF00355 Rieske [2Fe-2S] domain XPE_00340 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XPE_00345 PF00033 Cytochrome b/b6/petB XPE_00345 PF00032 Cytochrome b(C-terminal)/b6/petD XPE_00350 PF02167 Cytochrome C1 family XPE_00355 PF00043 Glutathione S-transferase, C-terminal domain XPE_00355 PF02798 Glutathione S-transferase, N-terminal domain XPE_00360 PF04386 Stringent starvation protein B XPE_00380 PF00271 Helicase conserved C-terminal domain XPE_00380 PF00270 DEAD/DEAH box helicase XPE_00380 PF08494 DEAD/H associated XPE_00385 PF02245 Methylpurine-DNA glycosylase (MPG) XPE_00390 PF00672 HAMP domain XPE_00390 PF02743 Cache domain XPE_00390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_00395 PF01584 CheW-like domain XPE_00425 PF04679 ATP dependent DNA ligase C terminal region XPE_00425 PF01068 ATP dependent DNA ligase domain XPE_00425 PF13298 DNA polymerase Ligase (LigD) XPE_00430 PF00570 HRDC domain XPE_00430 PF01612 3'-5' exonuclease XPE_00445 PF03781 Sulfatase-modifying factor enzyme 1 XPE_00460 PF13742 OB-fold nucleic acid binding domain XPE_00460 PF02601 Exonuclease VII, large subunit XPE_00465 PF08331 Domain of unknown function (DUF1730) XPE_00470 PF01256 Carbohydrate kinase XPE_00470 PF03853 YjeF-related protein N-terminus XPE_00475 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XPE_00480 PF11741 AMIN domain XPE_00480 PF01520 N-acetylmuramoyl-L-alanine amidase XPE_00485 PF08676 MutL C terminal dimerisation domain XPE_00485 PF01119 DNA mismatch repair protein, C-terminal domain XPE_00505 PF05233 PHB accumulation regulatory domain XPE_00505 PF07879 PHB/PHA accumulation regulator DNA-binding domain XPE_00510 PF00106 short chain dehydrogenase XPE_00515 PF00749 tRNA synthetases class I (E and Q), catalytic domain XPE_00520 PF01435 Peptidase family M48 XPE_00525 PF00072 Response regulator receiver domain XPE_00525 PF00990 Diguanylate cyclase, GGDEF domain XPE_00525 PF00563 EAL domain XPE_00535 PF07152 YaeQ protein XPE_00540 PF00313 'Cold-shock' DNA-binding domain XPE_00545 PF14497 Glutathione S-transferase, C-terminal domain XPE_00545 PF02798 Glutathione S-transferase, N-terminal domain XPE_00550 PF00135 Carboxylesterase family XPE_00555 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XPE_00560 PF00156 Phosphoribosyl transferase domain XPE_00565 PF00270 DEAD/DEAH box helicase XPE_00565 PF00271 Helicase conserved C-terminal domain XPE_00565 PF03880 DbpA RNA binding domain XPE_00580 PF00545 ribonuclease XPE_00585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XPE_00585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XPE_00590 PF00459 Inositol monophosphatase family XPE_00595 PF00588 SpoU rRNA Methylase family XPE_00605 PF00990 Diguanylate cyclase, GGDEF domain XPE_00605 PF13188 PAS domain XPE_00605 PF00563 EAL domain XPE_00605 PF03707 Bacterial signalling protein N terminal repeat XPE_00610 PF04055 Radical SAM superfamily XPE_00615 PF01132 Elongation factor P (EF-P) OB domain XPE_00615 PF08207 Elongation factor P (EF-P) KOW-like domain XPE_00615 PF09285 Elongation factor P, C-terminal XPE_00625 PF01979 Amidohydrolase family XPE_00635 PF13419 Haloacid dehalogenase-like hydrolase XPE_00645 PF01095 Pectinesterase XPE_00660 PF00753 Metallo-beta-lactamase superfamily XPE_00670 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XPE_00675 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XPE_00695 PF01551 Peptidase family M23 XPE_00695 PF08460 Bacterial SH3 domain XPE_00700 PF01979 Amidohydrolase family XPE_00705 PF01809 Putative membrane protein insertion efficiency factor XPE_00710 PF01258 Prokaryotic dksA/traR C4-type zinc finger XPE_00720 PF02657 Fe-S metabolism associated domain XPE_00725 PF09190 DALR domain XPE_00725 PF01406 tRNA synthetases class I (C) catalytic domain XPE_00735 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XPE_00735 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XPE_00740 PF00764 Arginosuccinate synthase XPE_00755 PF00696 Amino acid kinase family XPE_00755 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XPE_00765 PF01118 Semialdehyde dehydrogenase, NAD binding domain XPE_00770 PF00206 Lyase XPE_00780 PF00696 Amino acid kinase family XPE_00780 PF01472 PUA domain XPE_00785 PF00171 Aldehyde dehydrogenase family XPE_00795 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XPE_00795 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XPE_00815 PF02322 Cytochrome bd terminal oxidase subunit II XPE_00820 PF01654 Cytochrome bd terminal oxidase subunit I XPE_00825 PF00005 ABC transporter XPE_00825 PF00664 ABC transporter transmembrane region XPE_00830 PF00664 ABC transporter transmembrane region XPE_00830 PF00005 ABC transporter XPE_00835 PF00313 'Cold-shock' DNA-binding domain XPE_00840 PF00561 alpha/beta hydrolase fold XPE_00850 PF03918 Cytochrome C biogenesis protein XPE_00855 PF08534 Redoxin XPE_00860 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XPE_00860 PF01578 Cytochrome C assembly protein XPE_00865 PF03100 CcmE XPE_00875 PF01578 Cytochrome C assembly protein XPE_00880 PF03379 CcmB protein XPE_00885 PF00005 ABC transporter XPE_00890 PF00155 Aminotransferase class I and II XPE_00895 PF00795 Carbon-nitrogen hydrolase XPE_00910 PF00849 RNA pseudouridylate synthase XPE_00910 PF01479 S4 domain XPE_00915 PF04079 Segregation and condensation complex subunit ScpB XPE_00920 PF02616 Segregation and condensation protein ScpA XPE_00925 PF03795 YCII-related domain XPE_00935 PF00356 Bacterial regulatory proteins, lacI family XPE_00955 PF00528 Binding-protein-dependent transport system inner membrane component XPE_00960 PF00528 Binding-protein-dependent transport system inner membrane component XPE_00985 PF00795 Carbon-nitrogen hydrolase XPE_00990 PF04371 Porphyromonas-type peptidyl-arginine deiminase XPE_01000 PF00444 Ribosomal protein L36 XPE_01005 PF02224 Cytidylate kinase XPE_01010 PF00575 S1 RNA binding domain XPE_01015 PF00216 Bacterial DNA-binding protein XPE_01025 PF18073 Rubredoxin metal binding domain XPE_01030 PF00953 Glycosyl transferase family 4 XPE_01035 PF02719 Polysaccharide biosynthesis protein XPE_01040 PF00483 Nucleotidyl transferase XPE_01045 PF00999 Sodium/hydrogen exchanger family XPE_01045 PF02254 TrkA-N domain XPE_01055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XPE_01055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XPE_01060 PF00478 IMP dehydrogenase / GMP reductase domain XPE_01060 PF00571 CBS domain XPE_01065 PF00117 Glutamine amidotransferase class-I XPE_01065 PF02540 NAD synthase XPE_01065 PF00958 GMP synthase C terminal domain XPE_01075 PF03352 Methyladenine glycosylase XPE_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_01090 PF03466 LysR substrate binding domain XPE_01100 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) XPE_01105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XPE_01105 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus XPE_01105 PF00361 Proton-conducting membrane transporter XPE_01110 PF03466 LysR substrate binding domain XPE_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_01115 PF14759 Reductase C-terminal XPE_01115 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_01120 PF00111 2Fe-2S iron-sulfur cluster binding domain XPE_01125 PF00067 Cytochrome P450 XPE_01135 PF03601 Conserved hypothetical protein 698 XPE_01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_01140 PF03466 LysR substrate binding domain XPE_01155 PF00196 Bacterial regulatory proteins, luxR family XPE_01155 PF00072 Response regulator receiver domain XPE_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01160 PF07730 Histidine kinase XPE_01170 PF00857 Isochorismatase family XPE_01180 PF07969 Amidohydrolase family XPE_01185 PF05977 Transmembrane secretion effector XPE_01200 PF00561 alpha/beta hydrolase fold XPE_01205 PF01566 Natural resistance-associated macrophage protein XPE_01210 PF02742 Iron dependent repressor, metal binding and dimerisation domain XPE_01210 PF01325 Iron dependent repressor, N-terminal DNA binding domain XPE_01215 PF14437 MafB19-like deaminase XPE_01220 PF00929 Exonuclease XPE_01225 PF05552 Conserved TM helix XPE_01225 PF00924 Mechanosensitive ion channel XPE_01230 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XPE_01230 PF02896 PEP-utilising enzyme, TIM barrel domain XPE_01230 PF00391 PEP-utilising enzyme, mobile domain XPE_01235 PF03618 Kinase/pyrophosphorylase XPE_01255 PF01066 CDP-alcohol phosphatidyltransferase XPE_01265 PF00561 alpha/beta hydrolase fold XPE_01280 PF00355 Rieske [2Fe-2S] domain XPE_01280 PF01266 FAD dependent oxidoreductase XPE_01290 PF16921 Tex protein YqgF-like domain XPE_01290 PF09371 Tex-like protein N-terminal domain XPE_01290 PF00575 S1 RNA binding domain XPE_01290 PF17674 HHH domain XPE_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01295 PF00512 His Kinase A (phospho-acceptor) domain XPE_01295 PF09308 LuxQ, periplasmic XPE_01295 PF00072 Response regulator receiver domain XPE_01335 PF00034 Cytochrome c XPE_01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_01350 PF00873 AcrB/AcrD/AcrF family XPE_01355 PF00873 AcrB/AcrD/AcrF family XPE_01365 PF01081 KDPG and KHG aldolase XPE_01370 PF00920 Dehydratase family XPE_01375 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XPE_01380 PF02685 Glucokinase XPE_01385 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XPE_01385 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XPE_01390 PF17912 MalK OB fold domain XPE_01390 PF00005 ABC transporter XPE_01395 PF01571 Aminomethyltransferase folate-binding domain XPE_01405 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XPE_01410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XPE_01415 PF02910 Fumarate reductase flavoprotein C-term XPE_01415 PF00890 FAD binding domain XPE_01425 PF13085 2Fe-2S iron-sulfur cluster binding domain XPE_01430 PF03937 Flavinator of succinate dehydrogenase XPE_01440 PF12704 MacB-like periplasmic core domain XPE_01440 PF02687 FtsX-like permease family XPE_01445 PF00005 ABC transporter XPE_01455 PF03772 Competence protein XPE_01455 PF00753 Metallo-beta-lactamase superfamily XPE_01460 PF01618 MotA/TolQ/ExbB proton channel family XPE_01470 PF00664 ABC transporter transmembrane region XPE_01470 PF00005 ABC transporter XPE_01475 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XPE_01480 PF02348 Cytidylyltransferase XPE_01485 PF01451 Low molecular weight phosphotyrosine protein phosphatase XPE_01495 PF01541 GIY-YIG catalytic domain XPE_01495 PF08459 UvrC Helix-hairpin-helix N-terminal XPE_01495 PF02151 UvrB/uvrC motif XPE_01500 PF01066 CDP-alcohol phosphatidyltransferase XPE_01525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XPE_01525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XPE_01525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XPE_01535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XPE_01550 PF00072 Response regulator receiver domain XPE_01550 PF00196 Bacterial regulatory proteins, luxR family XPE_01555 PF10150 Ribonuclease E/G family XPE_01555 PF00575 S1 RNA binding domain XPE_01555 PF12111 Polyribonucleotide phosphorylase C terminal XPE_01560 PF00849 RNA pseudouridylate synthase XPE_01560 PF01479 S4 domain XPE_01565 PF11737 Protein of unknown function (DUF3300) XPE_01570 PF02535 ZIP Zinc transporter XPE_01580 PF01329 Pterin 4 alpha carbinolamine dehydratase XPE_01585 PF01106 NifU-like domain XPE_01600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_01600 PF00529 HlyD membrane-fusion protein of T1SS XPE_01605 PF00873 AcrB/AcrD/AcrF family XPE_01610 PF00440 Bacterial regulatory proteins, tetR family XPE_01610 PF18665 Tetracyclin repressor-like, C-terminal domain XPE_01620 PF06441 Epoxide hydrolase N terminus XPE_01645 PF02585 GlcNAc-PI de-N-acetylase XPE_01645 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XPE_01660 PF12697 Alpha/beta hydrolase family XPE_01660 PF08241 Methyltransferase domain XPE_01670 PF00106 short chain dehydrogenase XPE_01675 PF01925 Sulfite exporter TauE/SafE XPE_01690 PF04143 Sulphur transport XPE_01695 PF00753 Metallo-beta-lactamase superfamily XPE_01710 PF07859 alpha/beta hydrolase fold XPE_01725 PF13492 GAF domain XPE_01725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01725 PF07730 Histidine kinase XPE_01725 PF13185 GAF domain XPE_01735 PF00072 Response regulator receiver domain XPE_01735 PF00196 Bacterial regulatory proteins, luxR family XPE_01740 PF07730 Histidine kinase XPE_01740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01745 PF00072 Response regulator receiver domain XPE_01745 PF00196 Bacterial regulatory proteins, luxR family XPE_01750 PF00067 Cytochrome P450 XPE_01755 PF05199 GMC oxidoreductase XPE_01755 PF00732 GMC oxidoreductase XPE_01765 PF00072 Response regulator receiver domain XPE_01765 PF00486 Transcriptional regulatory protein, C terminal XPE_01770 PF03150 Di-haem cytochrome c peroxidase XPE_01770 PF00034 Cytochrome c XPE_01775 PF00512 His Kinase A (phospho-acceptor) domain XPE_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01780 PF03466 LysR substrate binding domain XPE_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_01800 PF00069 Protein kinase domain XPE_01840 PF04717 Type VI secretion system, phage-baseplate injector XPE_01865 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_01865 PF17871 AAA lid domain XPE_01865 PF07724 AAA domain (Cdc48 subfamily) XPE_01865 PF00004 ATPase family associated with various cellular activities (AAA) XPE_01890 PF05638 Type VI secretion system effector, Hcp XPE_01925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XPE_01930 PF07995 Glucose / Sorbosone dehydrogenase XPE_01940 PF00144 Beta-lactamase XPE_01960 PF00082 Subtilase family XPE_01960 PF03797 Autotransporter beta-domain XPE_01970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_01975 PF00873 AcrB/AcrD/AcrF family XPE_01980 PF02321 Outer membrane efflux protein XPE_01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_01985 PF13426 PAS domain XPE_01985 PF00072 Response regulator receiver domain XPE_01985 PF08448 PAS fold XPE_01985 PF00512 His Kinase A (phospho-acceptor) domain XPE_01990 PF00072 Response regulator receiver domain XPE_01990 PF00196 Bacterial regulatory proteins, luxR family XPE_01995 PF12951 Passenger-associated-transport-repeat XPE_02000 PF08448 PAS fold XPE_02000 PF08447 PAS fold XPE_02000 PF00563 EAL domain XPE_02000 PF00990 Diguanylate cyclase, GGDEF domain XPE_02015 PF05974 Domain of unknown function (DUF892) XPE_02030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XPE_02035 PF00384 Molybdopterin oxidoreductase XPE_02035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XPE_02035 PF04324 BFD-like [2Fe-2S] binding domain XPE_02035 PF01568 Molydopterin dinucleotide binding domain XPE_02040 PF00355 Rieske [2Fe-2S] domain XPE_02040 PF11723 Homotrimeric ring hydroxylase XPE_02045 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_02045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XPE_02045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XPE_02045 PF18267 Rubredoxin NAD+ reductase C-terminal domain XPE_02045 PF04324 BFD-like [2Fe-2S] binding domain XPE_02050 PF07690 Major Facilitator Superfamily XPE_02060 PF00072 Response regulator receiver domain XPE_02060 PF03861 ANTAR domain XPE_02065 PF10414 Sirohaem synthase dimerisation region XPE_02065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XPE_02065 PF14824 Sirohaem biosynthesis protein central XPE_02090 PF12804 MobA-like NTP transferase domain XPE_02095 PF00994 Probable molybdopterin binding domain XPE_02095 PF03454 MoeA C-terminal region (domain IV) XPE_02095 PF03453 MoeA N-terminal region (domain I and II) XPE_02105 PF03372 Endonuclease/Exonuclease/phosphatase family XPE_02115 PF00107 Zinc-binding dehydrogenase XPE_02115 PF13823 Alcohol dehydrogenase GroES-associated XPE_02115 PF08240 Alcohol dehydrogenase GroES-like domain XPE_02150 PF00899 ThiF family XPE_02155 PF03453 MoeA N-terminal region (domain I and II) XPE_02155 PF03454 MoeA C-terminal region (domain IV) XPE_02155 PF00994 Probable molybdopterin binding domain XPE_02160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XPE_02160 PF01926 50S ribosome-binding GTPase XPE_02165 PF13360 PQQ-like domain XPE_02165 PF01011 PQQ enzyme repeat XPE_02175 PF13464 Domain of unknown function (DUF4115) XPE_02185 PF04055 Radical SAM superfamily XPE_02190 PF00334 Nucleoside diphosphate kinase XPE_02200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XPE_02200 PF00378 Enoyl-CoA hydratase/isomerase XPE_02200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XPE_02205 PF00108 Thiolase, N-terminal domain XPE_02205 PF02803 Thiolase, C-terminal domain XPE_02210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XPE_02215 PF00004 ATPase family associated with various cellular activities (AAA) XPE_02215 PF16193 AAA C-terminal domain XPE_02215 PF12002 MgsA AAA+ ATPase C terminal XPE_02230 PF03548 Outer membrane lipoprotein carrier protein LolA XPE_02240 PF09397 Ftsk gamma domain XPE_02240 PF01580 FtsK/SpoIIIE family XPE_02240 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XPE_02240 PF17854 FtsK alpha domain XPE_02245 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_02260 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XPE_02265 PF01176 Translation initiation factor 1A / IF-1 XPE_02270 PF00004 ATPase family associated with various cellular activities (AAA) XPE_02270 PF07724 AAA domain (Cdc48 subfamily) XPE_02270 PF02861 Clp amino terminal domain, pathogenicity island component XPE_02270 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_02270 PF17871 AAA lid domain XPE_02275 PF02617 ATP-dependent Clp protease adaptor protein ClpS XPE_02280 PF00293 NUDIX domain XPE_02290 PF04356 Protein of unknown function (DUF489) XPE_02295 PF12729 Four helix bundle sensory module for signal transduction XPE_02295 PF00672 HAMP domain XPE_02295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02310 PF03707 Bacterial signalling protein N terminal repeat XPE_02310 PF00990 Diguanylate cyclase, GGDEF domain XPE_02310 PF00563 EAL domain XPE_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02315 PF07730 Histidine kinase XPE_02320 PF03707 Bacterial signalling protein N terminal repeat XPE_02320 PF00990 Diguanylate cyclase, GGDEF domain XPE_02320 PF00563 EAL domain XPE_02325 PF13426 PAS domain XPE_02325 PF13188 PAS domain XPE_02325 PF00512 His Kinase A (phospho-acceptor) domain XPE_02325 PF00989 PAS fold XPE_02325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02345 PF00072 Response regulator receiver domain XPE_02345 PF01584 CheW-like domain XPE_02355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XPE_02355 PF00460 Flagella basal body rod protein XPE_02360 PF03963 Flagellar hook capping protein - N-terminal region XPE_02365 PF07559 Flagellar basal body protein FlaE XPE_02365 PF00460 Flagella basal body rod protein XPE_02365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XPE_02370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XPE_02370 PF00460 Flagella basal body rod protein XPE_02380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XPE_02380 PF00460 Flagella basal body rod protein XPE_02385 PF02107 Flagellar L-ring protein XPE_02390 PF02119 Flagellar P-ring protein XPE_02395 PF10135 Rod binding protein XPE_02395 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XPE_02400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XPE_02400 PF07196 Flagellin hook IN motif XPE_02405 PF00700 Bacterial flagellin C-terminal helical region XPE_02405 PF00669 Bacterial flagellin N-terminal helical region XPE_02410 PF00700 Bacterial flagellin C-terminal helical region XPE_02410 PF00669 Bacterial flagellin N-terminal helical region XPE_02415 PF02465 Flagellar hook-associated protein 2 N-terminus XPE_02415 PF07195 Flagellar hook-associated protein 2 C-terminus XPE_02415 PF07196 Flagellin hook IN motif XPE_02420 PF02561 Flagellar protein FliS XPE_02435 PF00196 Bacterial regulatory proteins, luxR family XPE_02435 PF00072 Response regulator receiver domain XPE_02440 PF00309 Sigma-54 factor, Activator interacting domain (AID) XPE_02440 PF04963 Sigma-54 factor, core binding domain XPE_02440 PF04552 Sigma-54, DNA binding domain XPE_02445 PF00072 Response regulator receiver domain XPE_02445 PF01339 CheB methylesterase XPE_02450 PF00072 Response regulator receiver domain XPE_02450 PF00158 Sigma-54 interaction domain XPE_02450 PF02954 Bacterial regulatory protein, Fis family XPE_02455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XPE_02465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XPE_02465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XPE_02500 PF04230 Polysaccharide pyruvyl transferase XPE_02505 PF00535 Glycosyl transferase family 2 XPE_02505 PF00534 Glycosyl transferases group 1 XPE_02510 PF02049 Flagellar hook-basal body complex protein FliE XPE_02515 PF08345 Flagellar M-ring protein C-terminal XPE_02515 PF01514 Secretory protein of YscJ/FliF family XPE_02520 PF01706 FliG C-terminal domain XPE_02520 PF14841 FliG middle domain XPE_02520 PF14842 FliG N-terminal domain XPE_02530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XPE_02530 PF18269 T3SS EscN ATPase C-terminal domain XPE_02550 PF02154 Flagellar motor switch protein FliM XPE_02550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XPE_02555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XPE_02560 PF04347 Flagellar biosynthesis protein, FliO XPE_02565 PF00813 FliP family XPE_02575 PF01313 Bacterial export proteins, family 3 XPE_02580 PF01311 Bacterial export proteins, family 1 XPE_02585 PF00563 EAL domain XPE_02585 PF00990 Diguanylate cyclase, GGDEF domain XPE_02585 PF03707 Bacterial signalling protein N terminal repeat XPE_02585 PF13188 PAS domain XPE_02595 PF00990 Diguanylate cyclase, GGDEF domain XPE_02595 PF00563 EAL domain XPE_02595 PF13188 PAS domain XPE_02595 PF03707 Bacterial signalling protein N terminal repeat XPE_02600 PF00563 EAL domain XPE_02600 PF03707 Bacterial signalling protein N terminal repeat XPE_02600 PF00990 Diguanylate cyclase, GGDEF domain XPE_02605 PF01312 FlhB HrpN YscU SpaS Family XPE_02610 PF00771 FHIPEP family XPE_02615 PF00448 SRP54-type protein, GTPase domain XPE_02620 PF10609 NUBPL iron-transfer P-loop NTPase XPE_02625 PF04539 Sigma-70 region 3 XPE_02625 PF04542 Sigma-70 region 2 XPE_02625 PF04545 Sigma-70, region 4 XPE_02630 PF00072 Response regulator receiver domain XPE_02635 PF04344 Chemotaxis phosphatase, CheZ XPE_02640 PF01627 Hpt domain XPE_02640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02640 PF07194 P2 response regulator binding domain XPE_02640 PF01584 CheW-like domain XPE_02640 PF02895 Signal transducing histidine kinase, homodimeric domain XPE_02660 PF01527 Transposase XPE_02695 PF01527 Transposase XPE_02700 PF13683 Integrase core domain XPE_02700 PF13276 HTH-like domain XPE_02725 PF01618 MotA/TolQ/ExbB proton channel family XPE_02730 PF00691 OmpA family XPE_02730 PF13677 Membrane MotB of proton-channel complex MotA/MotB XPE_02735 PF13614 AAA domain XPE_02750 PF00072 Response regulator receiver domain XPE_02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02755 PF02895 Signal transducing histidine kinase, homodimeric domain XPE_02755 PF09078 CheY binding XPE_02755 PF01584 CheW-like domain XPE_02755 PF01627 Hpt domain XPE_02760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02765 PF02203 Tar ligand binding domain homologue XPE_02765 PF00672 HAMP domain XPE_02765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02775 PF00672 HAMP domain XPE_02775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02775 PF02203 Tar ligand binding domain homologue XPE_02780 PF02203 Tar ligand binding domain homologue XPE_02780 PF00672 HAMP domain XPE_02780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02790 PF00672 HAMP domain XPE_02790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02790 PF02203 Tar ligand binding domain homologue XPE_02795 PF02203 Tar ligand binding domain homologue XPE_02795 PF00672 HAMP domain XPE_02795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02800 PF00672 HAMP domain XPE_02800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02800 PF02203 Tar ligand binding domain homologue XPE_02805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02805 PF02203 Tar ligand binding domain homologue XPE_02805 PF00672 HAMP domain XPE_02815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02815 PF00672 HAMP domain XPE_02815 PF02203 Tar ligand binding domain homologue XPE_02825 PF00672 HAMP domain XPE_02825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02825 PF02203 Tar ligand binding domain homologue XPE_02830 PF00672 HAMP domain XPE_02830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02830 PF02203 Tar ligand binding domain homologue XPE_02835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02835 PF00672 HAMP domain XPE_02835 PF02203 Tar ligand binding domain homologue XPE_02840 PF02203 Tar ligand binding domain homologue XPE_02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02840 PF00672 HAMP domain XPE_02850 PF07317 Flagellar regulator YcgR XPE_02850 PF07238 PilZ domain XPE_02855 PF01584 CheW-like domain XPE_02865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_02865 PF02203 Tar ligand binding domain homologue XPE_02865 PF00672 HAMP domain XPE_02870 PF03705 CheR methyltransferase, all-alpha domain XPE_02870 PF01739 CheR methyltransferase, SAM binding domain XPE_02875 PF03975 CheD chemotactic sensory transduction XPE_02880 PF00072 Response regulator receiver domain XPE_02880 PF01339 CheB methylesterase XPE_02885 PF00563 EAL domain XPE_02885 PF00990 Diguanylate cyclase, GGDEF domain XPE_02885 PF03707 Bacterial signalling protein N terminal repeat XPE_02890 PF00561 alpha/beta hydrolase fold XPE_02895 PF06434 Aconitate hydratase 2 N-terminus XPE_02895 PF00330 Aconitase family (aconitate hydratase) XPE_02895 PF11791 Aconitate B N-terminal domain XPE_02910 PF00330 Aconitase family (aconitate hydratase) XPE_02910 PF00694 Aconitase C-terminal domain XPE_02920 PF00501 AMP-binding enzyme XPE_02920 PF13193 AMP-binding enzyme C-terminal domain XPE_02925 PF00378 Enoyl-CoA hydratase/isomerase XPE_02930 PF00072 Response regulator receiver domain XPE_02930 PF01627 Hpt domain XPE_02930 PF00512 His Kinase A (phospho-acceptor) domain XPE_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02935 PF00072 Response regulator receiver domain XPE_02935 PF01627 Hpt domain XPE_02935 PF00512 His Kinase A (phospho-acceptor) domain XPE_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_02940 PF00072 Response regulator receiver domain XPE_02945 PF00152 tRNA synthetases class II (D, K and N) XPE_02945 PF01336 OB-fold nucleic acid binding domain XPE_02950 PF03462 PCRF domain XPE_02950 PF00472 RF-1 domain XPE_02955 PF00072 Response regulator receiver domain XPE_02955 PF04397 LytTr DNA-binding domain XPE_02965 PF17768 RecJ OB domain XPE_02965 PF02272 DHHA1 domain XPE_02965 PF01368 DHH family XPE_02975 PF03449 Transcription elongation factor, N-terminal XPE_02975 PF01272 Transcription elongation factor, GreA/GreB, C-term XPE_02980 PF02142 MGS-like domain XPE_02980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XPE_02980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XPE_02990 PF00117 Glutamine amidotransferase class-I XPE_02990 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XPE_02995 PF01113 Dihydrodipicolinate reductase, N-terminus XPE_02995 PF05173 Dihydrodipicolinate reductase, C-terminus XPE_03005 PF03473 MOSC domain XPE_03005 PF03475 3-alpha domain XPE_03010 PF00155 Aminotransferase class I and II XPE_03025 PF07670 Nucleoside recognition XPE_03025 PF02421 Ferrous iron transport protein B XPE_03025 PF07664 Ferrous iron transport protein B C terminus XPE_03035 PF00378 Enoyl-CoA hydratase/isomerase XPE_03045 PF00682 HMGL-like XPE_03050 PF00106 short chain dehydrogenase XPE_03055 PF08207 Elongation factor P (EF-P) KOW-like domain XPE_03055 PF01132 Elongation factor P (EF-P) OB domain XPE_03055 PF09285 Elongation factor P, C-terminal XPE_03075 PF02913 FAD linked oxidases, C-terminal domain XPE_03075 PF01565 FAD binding domain XPE_03080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XPE_03080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XPE_03090 PF13520 Amino acid permease XPE_03095 PF13520 Amino acid permease XPE_03100 PF00596 Class II Aldolase and Adducin N-terminal domain XPE_03105 PF03079 ARD/ARD' family XPE_03125 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XPE_03125 PF01502 Phosphoribosyl-AMP cyclohydrolase XPE_03130 PF00977 Histidine biosynthesis protein XPE_03135 PF00977 Histidine biosynthesis protein XPE_03140 PF00117 Glutamine amidotransferase class-I XPE_03145 PF00475 Imidazoleglycerol-phosphate dehydratase XPE_03150 PF00155 Aminotransferase class I and II XPE_03155 PF00815 Histidinol dehydrogenase XPE_03160 PF01634 ATP phosphoribosyltransferase XPE_03160 PF08029 HisG, C-terminal domain XPE_03170 PF03129 Anticodon binding domain XPE_03170 PF13393 Histidyl-tRNA synthetase XPE_03175 PF00027 Cyclic nucleotide-binding domain XPE_03175 PF13545 Crp-like helix-turn-helix domain XPE_03185 PF14821 Threonine synthase N terminus XPE_03185 PF00291 Pyridoxal-phosphate dependent enzyme XPE_03195 PF00288 GHMP kinases N terminal domain XPE_03195 PF08544 GHMP kinases C terminal XPE_03200 PF03447 Homoserine dehydrogenase, NAD binding domain XPE_03200 PF00742 Homoserine dehydrogenase XPE_03200 PF01842 ACT domain XPE_03200 PF00696 Amino acid kinase family XPE_03200 PF13840 ACT domain XPE_03205 PF03073 TspO/MBR family XPE_03220 PF01527 Transposase XPE_03240 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XPE_03240 PF08479 POTRA domain, ShlB-type XPE_03240 PF17287 POTRA domain XPE_03265 PF00171 Aldehyde dehydrogenase family XPE_03285 PF01180 Dihydroorotate dehydrogenase XPE_03290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XPE_03290 PF01565 FAD binding domain XPE_03300 PF01177 Asp/Glu/Hydantoin racemase XPE_03305 PF07690 Major Facilitator Superfamily XPE_03310 PF01569 PAP2 superfamily XPE_03315 PF04551 GcpE protein XPE_03330 PF00072 Response regulator receiver domain XPE_03335 PF02013 Cellulose or protein binding domain XPE_03335 PF00150 Cellulase (glycosyl hydrolase family 5) XPE_03340 PF00563 EAL domain XPE_03340 PF01590 GAF domain XPE_03340 PF00990 Diguanylate cyclase, GGDEF domain XPE_03340 PF00360 Phytochrome region XPE_03345 PF00474 Sodium:solute symporter family XPE_03355 PF01915 Glycosyl hydrolase family 3 C-terminal domain XPE_03355 PF14310 Fibronectin type III-like domain XPE_03355 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_03380 PF00342 Phosphoglucose isomerase XPE_03385 PF02261 Aspartate decarboxylase XPE_03390 PF02569 Pantoate-beta-alanine ligase XPE_03395 PF02548 Ketopantoate hydroxymethyltransferase XPE_03400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XPE_03405 PF12627 Probable RNA and SrmB- binding site of polymerase A XPE_03405 PF12626 Polymerase A arginine-rich C-terminus XPE_03405 PF01743 Poly A polymerase head domain XPE_03415 PF02649 Type I GTP cyclohydrolase folE2 XPE_03420 PF01520 N-acetylmuramoyl-L-alanine amidase XPE_03435 PF00083 Sugar (and other) transporter XPE_03445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XPE_03445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XPE_03455 PF01055 Glycosyl hydrolases family 31 XPE_03455 PF17137 Domain of unknown function (DUF5110) XPE_03455 PF16338 Domain of unknown function (DUF4968) XPE_03470 PF00942 Cellulose binding domain XPE_03470 PF03442 Carbohydrate binding domain X2 XPE_03485 PF03466 LysR substrate binding domain XPE_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_03495 PF01081 KDPG and KHG aldolase XPE_03500 PF13378 Enolase C-terminal domain-like XPE_03500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XPE_03505 PF08450 SMP-30/Gluconolactonase/LRE-like region XPE_03510 PF05035 2-keto-3-deoxy-galactonokinase XPE_03515 PF11953 Domain of unknown function (DUF3470) XPE_03515 PF00037 4Fe-4S binding domain XPE_03525 PF00701 Dihydrodipicolinate synthetase family XPE_03540 PF00578 AhpC/TSA family XPE_03545 PF13638 PIN domain XPE_03545 PF02562 PhoH-like protein XPE_03560 PF08543 Phosphomethylpyrimidine kinase XPE_03585 PF03466 LysR substrate binding domain XPE_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_03590 PF17954 Quercetinase C-terminal cupin domain XPE_03590 PF02678 Pirin XPE_03595 PF13426 PAS domain XPE_03595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_03595 PF08447 PAS fold XPE_03610 PF02599 Global regulator protein family XPE_03615 PF02272 DHHA1 domain XPE_03615 PF01411 tRNA synthetases class II (A) XPE_03615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XPE_03620 PF02631 RecX family XPE_03630 PF00154 recA bacterial DNA recombination protein XPE_03635 PF01726 LexA DNA binding domain XPE_03635 PF00717 Peptidase S24-like XPE_03640 PF03109 ABC1 family XPE_03645 PF02464 Competence-damaged protein XPE_03650 PF13167 GTP-binding GTPase N-terminal XPE_03650 PF16360 GTP-binding GTPase Middle Region XPE_03650 PF01926 50S ribosome-binding GTPase XPE_03655 PF17209 Hfq protein XPE_03665 PF00809 Pterin binding enzyme XPE_03670 PF01434 Peptidase family M41 XPE_03670 PF06480 FtsH Extracellular XPE_03670 PF17862 AAA+ lid domain XPE_03670 PF00004 ATPase family associated with various cellular activities (AAA) XPE_03675 PF01728 FtsJ-like methyltransferase XPE_03680 PF01985 CRS1 / YhbY (CRM) domain XPE_03685 PF04430 Protein of unknown function (DUF498/DUF598) XPE_03690 PF01476 LysM domain XPE_03690 PF01551 Peptidase family M23 XPE_03695 PF09335 SNARE associated Golgi protein XPE_03705 PF01975 Survival protein SurE XPE_03710 PF01713 Smr domain XPE_03715 PF01142 tRNA pseudouridine synthase D (TruD) XPE_03720 PF02542 YgbB family XPE_03725 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XPE_03730 PF04977 Septum formation initiator XPE_03735 PF03952 Enolase, N-terminal domain XPE_03735 PF00113 Enolase, C-terminal TIM barrel domain XPE_03745 PF00793 DAHP synthetase I family XPE_03750 PF00117 Glutamine amidotransferase class-I XPE_03750 PF06418 CTP synthase N-terminus XPE_03760 PF00986 DNA gyrase B subunit, carboxyl terminus XPE_03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_03760 PF01751 Toprim domain XPE_03760 PF00204 DNA gyrase B XPE_03775 PF01384 Phosphate transporter family XPE_03790 PF01595 Cyclin M transmembrane N-terminal domain XPE_03790 PF03471 Transporter associated domain XPE_03790 PF00571 CBS domain XPE_03805 PF00296 Luciferase-like monooxygenase XPE_03810 PF00083 Sugar (and other) transporter XPE_03815 PF00005 ABC transporter XPE_03815 PF00664 ABC transporter transmembrane region XPE_03820 PF00005 ABC transporter XPE_03840 PF00534 Glycosyl transferases group 1 XPE_03840 PF13579 Glycosyl transferase 4-like domain XPE_03860 PF08241 Methyltransferase domain XPE_03875 PF00535 Glycosyl transferase family 2 XPE_03880 PF01943 Polysaccharide biosynthesis protein XPE_03885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XPE_03905 PF05523 WxcM-like, C-terminal XPE_03920 PF00034 Cytochrome c XPE_03935 PF04542 Sigma-70 region 2 XPE_03935 PF08281 Sigma-70, region 4 XPE_03945 PF00082 Subtilase family XPE_03950 PF01578 Cytochrome C assembly protein XPE_03955 PF04995 Heme exporter protein D (CcmD) XPE_03960 PF03100 CcmE XPE_03965 PF01578 Cytochrome C assembly protein XPE_03965 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XPE_03970 PF08534 Redoxin XPE_03975 PF03918 Cytochrome C biogenesis protein XPE_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_03985 PF13426 PAS domain XPE_03985 PF00072 Response regulator receiver domain XPE_03990 PF06745 KaiC XPE_04000 PF00672 HAMP domain XPE_04000 PF00072 Response regulator receiver domain XPE_04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_04000 PF00512 His Kinase A (phospho-acceptor) domain XPE_04000 PF01627 Hpt domain XPE_04000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XPE_04005 PF08448 PAS fold XPE_04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_04005 PF00072 Response regulator receiver domain XPE_04005 PF13188 PAS domain XPE_04005 PF00512 His Kinase A (phospho-acceptor) domain XPE_04020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_04020 PF02203 Tar ligand binding domain homologue XPE_04020 PF00672 HAMP domain XPE_04035 PF03466 LysR substrate binding domain XPE_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_04040 PF02525 Flavodoxin-like fold XPE_04045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XPE_04045 PF02403 Seryl-tRNA synthetase N-terminal domain XPE_04050 PF03544 Gram-negative bacterial TonB protein C-terminal XPE_04060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XPE_04065 PF00800 Prephenate dehydratase XPE_04065 PF01817 Chorismate mutase type II XPE_04065 PF01842 ACT domain XPE_04070 PF00266 Aminotransferase class-V XPE_04075 PF00174 Oxidoreductase molybdopterin binding domain XPE_04080 PF01794 Ferric reductase like transmembrane component XPE_04105 PF07702 UTRA domain XPE_04105 PF00392 Bacterial regulatory proteins, gntR family XPE_04120 PF07969 Amidohydrolase family XPE_04125 PF00221 Aromatic amino acid lyase XPE_04135 PF01175 Urocanase Rossmann-like domain XPE_04135 PF17392 Urocanase C-terminal domain XPE_04135 PF17391 Urocanase N-terminal domain XPE_04145 PF13360 PQQ-like domain XPE_04150 PF03989 DNA gyrase C-terminal domain, beta-propeller XPE_04150 PF00521 DNA gyrase/topoisomerase IV, subunit A XPE_04155 PF01008 Initiation factor 2 subunit family XPE_04170 PF00152 tRNA synthetases class II (D, K and N) XPE_04175 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XPE_04175 PF12826 Helix-hairpin-helix motif XPE_04175 PF01653 NAD-dependent DNA ligase adenylation domain XPE_04175 PF00533 BRCA1 C Terminus (BRCT) domain XPE_04175 PF03120 NAD-dependent DNA ligase OB-fold domain XPE_04180 PF00155 Aminotransferase class I and II XPE_04190 PF04354 ZipA, C-terminal FtsZ-binding domain XPE_04195 PF02463 RecF/RecN/SMC N terminal domain XPE_04200 PF01281 Ribosomal protein L9, N-terminal domain XPE_04200 PF03948 Ribosomal protein L9, C-terminal domain XPE_04205 PF01084 Ribosomal protein S18 XPE_04210 PF01250 Ribosomal protein S6 XPE_04215 PF01521 Iron-sulphur cluster biosynthesis XPE_04225 PF00152 tRNA synthetases class II (D, K and N) XPE_04225 PF01336 OB-fold nucleic acid binding domain XPE_04250 PF00196 Bacterial regulatory proteins, luxR family XPE_04250 PF00072 Response regulator receiver domain XPE_04295 PF00484 Carbonic anhydrase XPE_04300 PF06052 3-hydroxyanthranilic acid dioxygenase XPE_04310 PF00266 Aminotransferase class-V XPE_04315 PF01494 FAD binding domain XPE_04325 PF00929 Exonuclease XPE_04325 PF08411 Exonuclease C-terminal XPE_04335 PF00248 Aldo/keto reductase family XPE_04350 PF01513 ATP-NAD kinase XPE_04355 PF01170 Putative RNA methylase family UPF0020 XPE_04355 PF02926 THUMP domain XPE_04355 PF10672 S-adenosylmethionine-dependent methyltransferase XPE_04395 PF00581 Rhodanese-like domain XPE_04400 PF00293 NUDIX domain XPE_04405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XPE_04405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XPE_04410 PF00378 Enoyl-CoA hydratase/isomerase XPE_04420 PF00730 HhH-GPD superfamily base excision DNA repair protein XPE_04420 PF10576 Iron-sulfur binding domain of endonuclease III XPE_04420 PF00633 Helix-hairpin-helix motif XPE_04425 PF01740 STAS domain XPE_04425 PF00916 Sulfate permease family XPE_04430 PF00484 Carbonic anhydrase XPE_04445 PF12849 PBP superfamily domain XPE_04450 PF12849 PBP superfamily domain XPE_04455 PF00528 Binding-protein-dependent transport system inner membrane component XPE_04460 PF00528 Binding-protein-dependent transport system inner membrane component XPE_04465 PF00005 ABC transporter XPE_04470 PF01895 PhoU domain XPE_04480 PF00929 Exonuclease XPE_04485 PF07694 5TMR of 5TMR-LYT XPE_04485 PF00990 Diguanylate cyclase, GGDEF domain XPE_04495 PF08032 RNA 2'-O ribose methyltransferase substrate binding XPE_04495 PF00588 SpoU rRNA Methylase family XPE_04505 PF08206 Ribonuclease B OB domain XPE_04505 PF00575 S1 RNA binding domain XPE_04505 PF00773 RNB domain XPE_04505 PF08461 Ribonuclease R winged-helix domain XPE_04505 PF17876 Cold shock domain XPE_04535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_04535 PF02770 Acyl-CoA dehydrogenase, middle domain XPE_04535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_04540 PF01209 ubiE/COQ5 methyltransferase family XPE_04545 PF02574 Homocysteine S-methyltransferase XPE_04545 PF00809 Pterin binding enzyme XPE_04550 PF02310 B12 binding domain XPE_04550 PF02607 B12 binding domain XPE_04550 PF02965 Vitamin B12 dependent methionine synthase, activation domain XPE_04550 PF00809 Pterin binding enzyme XPE_04550 PF02574 Homocysteine S-methyltransferase XPE_04560 PF00294 pfkB family carbohydrate kinase XPE_04565 PF07690 Major Facilitator Superfamily XPE_04570 PF00356 Bacterial regulatory proteins, lacI family XPE_04585 PF04102 SlyX XPE_04590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XPE_04590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XPE_04590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XPE_04595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XPE_04595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XPE_04600 PF00255 Glutathione peroxidase XPE_04610 PF00392 Bacterial regulatory proteins, gntR family XPE_04615 PF00005 ABC transporter XPE_04640 PF00206 Lyase XPE_04640 PF10415 Fumarase C C-terminus XPE_04645 PF01595 Cyclin M transmembrane N-terminal domain XPE_04645 PF00571 CBS domain XPE_04645 PF03471 Transporter associated domain XPE_04655 PF08328 Adenylosuccinate lyase C-terminal XPE_04655 PF00206 Lyase XPE_04665 PF08007 Cupin superfamily protein XPE_04675 PF16870 2-oxoglutarate dehydrogenase C-terminal XPE_04675 PF16078 2-oxoglutarate dehydrogenase N-terminus XPE_04675 PF00676 Dehydrogenase E1 component XPE_04675 PF02779 Transketolase, pyrimidine binding domain XPE_04680 PF02817 e3 binding domain XPE_04680 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XPE_04680 PF00364 Biotin-requiring enzyme XPE_04685 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_04685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XPE_04690 PF03641 Possible lysine decarboxylase XPE_04695 PF01205 Uncharacterized protein family UPF0029 XPE_04700 PF00664 ABC transporter transmembrane region XPE_04700 PF00005 ABC transporter XPE_04705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_04705 PF03466 LysR substrate binding domain XPE_04710 PF03412 Peptidase C39 family XPE_04710 PF00664 ABC transporter transmembrane region XPE_04710 PF00005 ABC transporter XPE_04735 PF08543 Phosphomethylpyrimidine kinase XPE_04740 PF00684 DnaJ central domain XPE_04740 PF01556 DnaJ C terminal domain XPE_04740 PF00226 DnaJ domain XPE_04745 PF00012 Hsp70 protein XPE_04750 PF01025 GrpE XPE_04755 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XPE_04755 PF01628 HrcA protein C terminal domain XPE_04760 PF02463 RecF/RecN/SMC N terminal domain XPE_04765 PF01475 Ferric uptake regulator family XPE_04770 PF04355 SmpA / OmlA family XPE_04775 PF03658 RnfH family Ubiquitin XPE_04780 PF03364 Polyketide cyclase / dehydrase and lipid transport XPE_04785 PF01668 SmpB protein XPE_04820 PF00990 Diguanylate cyclase, GGDEF domain XPE_04830 PF08448 PAS fold XPE_04830 PF00990 Diguanylate cyclase, GGDEF domain XPE_04835 PF02321 Outer membrane efflux protein XPE_04840 PF00106 short chain dehydrogenase XPE_04845 PF00873 AcrB/AcrD/AcrF family XPE_04850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_04850 PF00529 HlyD membrane-fusion protein of T1SS XPE_04865 PF03466 LysR substrate binding domain XPE_04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_04870 PF05736 OprF membrane domain XPE_04870 PF00691 OmpA family XPE_04880 PF03441 FAD binding domain of DNA photolyase XPE_04880 PF00875 DNA photolyase XPE_04885 PF00772 DnaB-like helicase N terminal domain XPE_04885 PF03796 DnaB-like helicase C terminal domain XPE_04890 PF03358 NADPH-dependent FMN reductase XPE_04895 PF13537 Glutamine amidotransferase domain XPE_04895 PF00733 Asparagine synthase XPE_04905 PF00043 Glutathione S-transferase, C-terminal domain XPE_04905 PF02798 Glutathione S-transferase, N-terminal domain XPE_04915 PF02770 Acyl-CoA dehydrogenase, middle domain XPE_04915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_04915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_04930 PF01026 TatD related DNase XPE_04935 PF00899 ThiF family XPE_04950 PF00313 'Cold-shock' DNA-binding domain XPE_04960 PF02253 Phospholipase A1 XPE_04970 PF00484 Carbonic anhydrase XPE_04980 PF05681 Fumarate hydratase (Fumerase) XPE_04980 PF05683 Fumarase C-terminus XPE_04985 PF00005 ABC transporter XPE_04990 PF00175 Oxidoreductase NAD-binding domain XPE_04990 PF00970 Oxidoreductase FAD-binding domain XPE_04995 PF00255 Glutathione peroxidase XPE_05000 PF01432 Peptidase family M3 XPE_05005 PF12802 MarR family XPE_05030 PF00854 POT family XPE_05040 PF01915 Glycosyl hydrolase family 3 C-terminal domain XPE_05040 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_05040 PF14310 Fibronectin type III-like domain XPE_05040 PF07691 PA14 domain XPE_05060 PF07690 Major Facilitator Superfamily XPE_05065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_05065 PF00529 HlyD membrane-fusion protein of T1SS XPE_05070 PF02321 Outer membrane efflux protein XPE_05085 PF00521 DNA gyrase/topoisomerase IV, subunit A XPE_05085 PF03989 DNA gyrase C-terminal domain, beta-propeller XPE_05090 PF05724 Thiopurine S-methyltransferase (TPMT) XPE_05095 PF00210 Ferritin-like domain XPE_05100 PF01804 Penicillin amidase XPE_05105 PF07715 TonB-dependent Receptor Plug Domain XPE_05105 PF00593 TonB dependent receptor XPE_05115 PF13537 Glutamine amidotransferase domain XPE_05115 PF00733 Asparagine synthase XPE_05120 PF07687 Peptidase dimerisation domain XPE_05120 PF01546 Peptidase family M20/M25/M40 XPE_05125 PF03960 ArsC family XPE_05130 PF14602 Hexapeptide repeat of succinyl-transferase XPE_05130 PF00132 Bacterial transferase hexapeptide (six repeats) XPE_05130 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XPE_05135 PF01909 Nucleotidyltransferase domain XPE_05135 PF01966 HD domain XPE_05135 PF08335 GlnD PII-uridylyltransferase XPE_05140 PF00557 Metallopeptidase family M24 XPE_05175 PF00318 Ribosomal protein S2 XPE_05180 PF00889 Elongation factor TS XPE_05185 PF00990 Diguanylate cyclase, GGDEF domain XPE_05185 PF00072 Response regulator receiver domain XPE_05190 PF00696 Amino acid kinase family XPE_05195 PF01765 Ribosome recycling factor XPE_05200 PF01255 Putative undecaprenyl diphosphate synthase XPE_05210 PF13288 DXP reductoisomerase C-terminal domain XPE_05210 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XPE_05210 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XPE_05215 PF02163 Peptidase family M50 XPE_05215 PF17820 PDZ domain XPE_05220 PF07244 Surface antigen variable number repeat XPE_05220 PF01103 Surface antigen XPE_05230 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XPE_05230 PF00132 Bacterial transferase hexapeptide (six repeats) XPE_05235 PF07977 FabA-like domain XPE_05240 PF00132 Bacterial transferase hexapeptide (six repeats) XPE_05240 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XPE_05245 PF02684 Lipid-A-disaccharide synthetase XPE_05250 PF01351 Ribonuclease HII XPE_05255 PF02811 PHP domain XPE_05255 PF14579 Helix-hairpin-helix motif XPE_05255 PF07733 Bacterial DNA polymerase III alpha NTPase domain XPE_05255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XPE_05255 PF01336 OB-fold nucleic acid binding domain XPE_05260 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XPE_05295 PF03551 Transcriptional regulator PadR-like family XPE_05315 PF02592 Putative vitamin uptake transporter XPE_05325 PF02574 Homocysteine S-methyltransferase XPE_05330 PF00324 Amino acid permease XPE_05345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XPE_05365 PF01588 Putative tRNA binding domain XPE_05365 PF09334 tRNA synthetases class I (M) XPE_05375 PF04060 Putative Fe-S cluster XPE_05395 PF04545 Sigma-70, region 4 XPE_05395 PF04542 Sigma-70 region 2 XPE_05440 PF01042 Endoribonuclease L-PSP XPE_05450 PF09924 Uncharacterised conserved protein (DUF2156) XPE_05450 PF03706 Lysylphosphatidylglycerol synthase TM region XPE_05485 PF07690 Major Facilitator Superfamily XPE_05490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XPE_05495 PF03831 PhnA domain XPE_05495 PF08274 PhnA Zinc-Ribbon XPE_05505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XPE_05525 PF01258 Prokaryotic dksA/traR C4-type zinc finger XPE_05535 PF07043 Protein of unknown function (DUF1328) XPE_05540 PF01863 Protein of unknown function DUF45 XPE_05555 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XPE_05555 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XPE_05560 PF12951 Passenger-associated-transport-repeat XPE_05560 PF03797 Autotransporter beta-domain XPE_05560 PF00082 Subtilase family XPE_05565 PF00108 Thiolase, N-terminal domain XPE_05565 PF02803 Thiolase, C-terminal domain XPE_05580 PF00990 Diguanylate cyclase, GGDEF domain XPE_05580 PF00072 Response regulator receiver domain XPE_05600 PF01068 ATP dependent DNA ligase domain XPE_05600 PF04675 DNA ligase N terminus XPE_05600 PF04679 ATP dependent DNA ligase C terminal region XPE_05610 PF01068 ATP dependent DNA ligase domain XPE_05610 PF04675 DNA ligase N terminus XPE_05610 PF04679 ATP dependent DNA ligase C terminal region XPE_05615 PF00270 DEAD/DEAH box helicase XPE_05615 PF00271 Helicase conserved C-terminal domain XPE_05615 PF08494 DEAD/H associated XPE_05625 PF01494 FAD binding domain XPE_05630 PF00313 'Cold-shock' DNA-binding domain XPE_05635 PF01048 Phosphorylase superfamily XPE_05645 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_05650 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XPE_05655 PF01593 Flavin containing amine oxidoreductase XPE_05660 PF01323 DSBA-like thioredoxin domain XPE_05670 PF05958 tRNA (Uracil-5-)-methyltransferase XPE_05685 PF11967 Recombination protein O N terminal XPE_05685 PF02565 Recombination protein O C terminal XPE_05690 PF01926 50S ribosome-binding GTPase XPE_05690 PF07650 KH domain XPE_05695 PF14622 Ribonuclease-III-like XPE_05695 PF00035 Double-stranded RNA binding motif XPE_05705 PF10502 Signal peptidase, peptidase S26 XPE_05710 PF06421 GTP-binding protein LepA C-terminus XPE_05710 PF03144 Elongation factor Tu domain 2 XPE_05710 PF00679 Elongation factor G C-terminus XPE_05710 PF00009 Elongation factor Tu GTP binding domain XPE_05715 PF13180 PDZ domain XPE_05725 PF04542 Sigma-70 region 2 XPE_05725 PF08281 Sigma-70, region 4 XPE_05730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XPE_05730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XPE_05730 PF00378 Enoyl-CoA hydratase/isomerase XPE_05735 PF01545 Cation efflux family XPE_05740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XPE_05740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XPE_05745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XPE_05745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XPE_05745 PF00378 Enoyl-CoA hydratase/isomerase XPE_05750 PF00378 Enoyl-CoA hydratase/isomerase XPE_05755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_05755 PF02770 Acyl-CoA dehydrogenase, middle domain XPE_05755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_05760 PF00171 Aldehyde dehydrogenase family XPE_05765 PF09856 Predicted transcriptional regulator (DUF2083) XPE_05765 PF06114 IrrE N-terminal-like domain XPE_05765 PF01381 Helix-turn-helix XPE_05775 PF07745 Glycosyl hydrolase family 53 XPE_05780 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XPE_05780 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XPE_05780 PF16355 Domain of unknown function (DUF4982) XPE_05780 PF02837 Glycosyl hydrolases family 2, sugar binding domain XPE_05780 PF00703 Glycosyl hydrolases family 2 XPE_05795 PF00672 HAMP domain XPE_05795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_05820 PF03301 Tryptophan 2,3-dioxygenase XPE_05830 PF00488 MutS domain V XPE_05830 PF01624 MutS domain I XPE_05830 PF05192 MutS domain III XPE_05830 PF05190 MutS family domain IV XPE_05830 PF05188 MutS domain II XPE_05840 PF00141 Peroxidase XPE_05845 PF01479 S4 domain XPE_05860 PF01554 MatE XPE_05865 PF01245 Ribosomal protein L19 XPE_05870 PF01746 tRNA (Guanine-1)-methyltransferase XPE_05875 PF01782 RimM N-terminal domain XPE_05875 PF05239 PRC-barrel domain XPE_05880 PF00886 Ribosomal protein S16 XPE_05885 PF01063 Amino-transferase class IV XPE_05890 PF03060 Nitronate monooxygenase XPE_05895 PF02978 Signal peptide binding domain XPE_05895 PF00448 SRP54-type protein, GTPase domain XPE_05895 PF02881 SRP54-type protein, helical bundle domain XPE_05900 PF01578 Cytochrome C assembly protein XPE_05905 PF01263 Aldose 1-epimerase XPE_05910 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XPE_05915 PF00072 Response regulator receiver domain XPE_05920 PF00072 Response regulator receiver domain XPE_05920 PF13426 PAS domain XPE_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_05925 PF00512 His Kinase A (phospho-acceptor) domain XPE_05925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XPE_05925 PF00672 HAMP domain XPE_05925 PF01627 Hpt domain XPE_05925 PF00072 Response regulator receiver domain XPE_05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_05930 PF01739 CheR methyltransferase, SAM binding domain XPE_05930 PF03705 CheR methyltransferase, all-alpha domain XPE_05935 PF01339 CheB methylesterase XPE_05940 PF13492 GAF domain XPE_05940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_05940 PF13493 Domain of unknown function (DUF4118) XPE_05940 PF00512 His Kinase A (phospho-acceptor) domain XPE_05940 PF02702 Osmosensitive K+ channel His kinase sensor domain XPE_05945 PF07237 Protein of unknown function (DUF1428) XPE_05950 PF00085 Thioredoxin XPE_05955 PF07715 TonB-dependent Receptor Plug Domain XPE_05955 PF00593 TonB dependent receptor XPE_05960 PF04616 Glycosyl hydrolases family 43 XPE_05960 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XPE_05965 PF00512 His Kinase A (phospho-acceptor) domain XPE_05965 PF13188 PAS domain XPE_05965 PF00072 Response regulator receiver domain XPE_05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_05965 PF08448 PAS fold XPE_05970 PF17149 Periplasmic sensor domain found in signal transduction proteins XPE_05970 PF01627 Hpt domain XPE_05970 PF00672 HAMP domain XPE_05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_05970 PF00512 His Kinase A (phospho-acceptor) domain XPE_05970 PF00072 Response regulator receiver domain XPE_05980 PF13581 Histidine kinase-like ATPase domain XPE_05985 PF01740 STAS domain XPE_05990 PF01740 STAS domain XPE_05990 PF08678 Rsbr N terminal XPE_06000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_06000 PF00183 Hsp90 protein XPE_06005 PF12833 Helix-turn-helix domain XPE_06015 PF05656 Protein of unknown function (DUF805) XPE_06020 PF18073 Rubredoxin metal binding domain XPE_06030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XPE_06035 PF00510 Cytochrome c oxidase subunit III XPE_06040 PF00115 Cytochrome C and Quinol oxidase polypeptide I XPE_06055 PF02401 LytB protein XPE_06060 PF01252 Signal peptidase (SPase) II XPE_06065 PF06827 Zinc finger found in FPG and IleRS XPE_06065 PF00133 tRNA synthetases class I (I, L, M and V) XPE_06065 PF08264 Anticodon-binding domain of tRNA XPE_06070 PF06574 FAD synthetase XPE_06070 PF01687 Riboflavin kinase XPE_06075 PF03023 Lipid II flippase MurJ XPE_06080 PF01649 Ribosomal protein S20 XPE_06085 PF01926 50S ribosome-binding GTPase XPE_06085 PF01018 GTP1/OBG XPE_06090 PF01016 Ribosomal L27 protein XPE_06095 PF00829 Ribosomal prokaryotic L21 protein XPE_06100 PF17755 UvrA DNA-binding domain XPE_06100 PF17760 UvrA interaction domain XPE_06100 PF00005 ABC transporter XPE_06115 PF00378 Enoyl-CoA hydratase/isomerase XPE_06130 PF08281 Sigma-70, region 4 XPE_06130 PF04542 Sigma-70 region 2 XPE_06145 PF04377 Arginine-tRNA-protein transferase, C terminus XPE_06145 PF04376 Arginine-tRNA-protein transferase, N terminus XPE_06165 PF02222 ATP-grasp domain XPE_06190 PF00730 HhH-GPD superfamily base excision DNA repair protein XPE_06205 PF00072 Response regulator receiver domain XPE_06205 PF00196 Bacterial regulatory proteins, luxR family XPE_06210 PF07730 Histidine kinase XPE_06225 PF03775 Septum formation inhibitor MinC, C-terminal domain XPE_06225 PF05209 Septum formation inhibitor MinC, N-terminal domain XPE_06230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XPE_06235 PF03776 Septum formation topological specificity factor MinE XPE_06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_06245 PF08521 Two-component sensor kinase N-terminal XPE_06245 PF00512 His Kinase A (phospho-acceptor) domain XPE_06250 PF00486 Transcriptional regulatory protein, C terminal XPE_06250 PF00072 Response regulator receiver domain XPE_06265 PF08019 Phosphoethanolamine transferase EptA/EptB XPE_06265 PF00884 Sulfatase XPE_06285 PF07690 Major Facilitator Superfamily XPE_06290 PF03412 Peptidase C39 family XPE_06290 PF00005 ABC transporter XPE_06290 PF00664 ABC transporter transmembrane region XPE_06310 PF02347 Glycine cleavage system P-protein XPE_06315 PF00135 Carboxylesterase family XPE_06320 PF00248 Aldo/keto reductase family XPE_06325 PF18011 C-terminal domain found in long catalases XPE_06325 PF00199 Catalase XPE_06325 PF06628 Catalase-related immune-responsive XPE_06350 PF02311 AraC-like ligand binding domain XPE_06350 PF12833 Helix-turn-helix domain XPE_06365 PF00326 Prolyl oligopeptidase family XPE_06365 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XPE_06365 PF07676 WD40-like Beta Propeller Repeat XPE_06380 PF03169 OPT oligopeptide transporter protein XPE_06390 PF00326 Prolyl oligopeptidase family XPE_06400 PF02811 PHP domain XPE_06400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XPE_06400 PF07733 Bacterial DNA polymerase III alpha NTPase domain XPE_06400 PF14579 Helix-hairpin-helix motif XPE_06415 PF01726 LexA DNA binding domain XPE_06415 PF00717 Peptidase S24-like XPE_06450 PF00111 2Fe-2S iron-sulfur cluster binding domain XPE_06450 PF01799 [2Fe-2S] binding domain XPE_06455 PF00941 FAD binding domain in molybdopterin dehydrogenase XPE_06455 PF03450 CO dehydrogenase flavoprotein C-terminal domain XPE_06460 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XPE_06460 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XPE_06465 PF17755 UvrA DNA-binding domain XPE_06485 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_06495 PF00106 short chain dehydrogenase XPE_06505 PF07971 Glycosyl hydrolase family 92 XPE_06505 PF17678 Glycosyl hydrolase family 92 N-terminal domain XPE_06515 PF00723 Glycosyl hydrolases family 15 XPE_06525 PF01256 Carbohydrate kinase XPE_06530 PF00300 Histidine phosphatase superfamily (branch 1) XPE_06530 PF13456 Reverse transcriptase-like XPE_06570 PF08463 EcoEI R protein C-terminal XPE_06570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XPE_06570 PF00271 Helicase conserved C-terminal domain XPE_06570 PF04851 Type III restriction enzyme, res subunit XPE_06580 PF02384 N-6 DNA Methylase XPE_06585 PF01420 Type I restriction modification DNA specificity domain XPE_06600 PF00440 Bacterial regulatory proteins, tetR family XPE_06615 PF11838 ERAP1-like C-terminal domain XPE_06615 PF01433 Peptidase family M1 domain XPE_06620 PF00709 Adenylosuccinate synthetase XPE_06630 PF01145 SPFH domain / Band 7 family XPE_06635 PF01145 SPFH domain / Band 7 family XPE_06635 PF12221 Bacterial membrane protein N terminal XPE_06640 PF00072 Response regulator receiver domain XPE_06645 PF01556 DnaJ C terminal domain XPE_06645 PF00226 DnaJ domain XPE_06655 PF08534 Redoxin XPE_06665 PF00905 Penicillin binding protein transpeptidase domain XPE_06665 PF06832 Penicillin-Binding Protein C-terminus Family XPE_06665 PF00912 Transglycosylase XPE_06685 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XPE_06685 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XPE_06685 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XPE_06685 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XPE_06685 PF01835 MG2 domain XPE_06685 PF17962 Bacterial macroglobulin domain 6 XPE_06685 PF07703 Alpha-2-macroglobulin bait region domain XPE_06685 PF00207 Alpha-2-macroglobulin family XPE_06700 PF00593 TonB dependent receptor XPE_06700 PF07715 TonB-dependent Receptor Plug Domain XPE_06705 PF04303 PrpF protein XPE_06715 PF00694 Aconitase C-terminal domain XPE_06715 PF00330 Aconitase family (aconitate hydratase) XPE_06720 PF00285 Citrate synthase, C-terminal domain XPE_06730 PF02954 Bacterial regulatory protein, Fis family XPE_06730 PF06506 Propionate catabolism activator XPE_06730 PF00158 Sigma-54 interaction domain XPE_06755 PF09115 DNA polymerase III, delta subunit, C terminal XPE_06760 PF02618 YceG-like family XPE_06765 PF04715 Anthranilate synthase component I, N terminal region XPE_06765 PF00425 chorismate binding enzyme XPE_06770 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_06770 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_06775 PF00550 Phosphopantetheine attachment site XPE_06785 PF00698 Acyl transferase domain XPE_06795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XPE_06795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XPE_06800 PF01783 Ribosomal L32p protein family XPE_06805 PF02620 Large ribosomal RNA subunit accumulation protein YceD XPE_06810 PF02545 Maf-like protein XPE_06825 PF07726 ATPase family associated with various cellular activities (AAA) XPE_06825 PF17863 AAA lid domain XPE_06835 PF01841 Transglutaminase-like superfamily XPE_06835 PF11992 Domain of unknown function (DUF3488) XPE_06835 PF13559 Domain of unknown function (DUF4129) XPE_06845 PF01230 HIT domain XPE_06850 PF02132 RecR protein XPE_06850 PF13662 Toprim domain XPE_06855 PF02575 YbaB/EbfC DNA-binding family XPE_06860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XPE_06860 PF12170 DNA polymerase III tau subunit V interacting with alpha XPE_06860 PF12169 DNA polymerase III subunits gamma and tau domain III XPE_06880 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system XPE_06925 PF04002 RadC-like JAB domain XPE_07010 PF02391 MoaE protein XPE_07015 PF02597 ThiS family XPE_07020 PF01967 MoaC family XPE_07030 PF04055 Radical SAM superfamily XPE_07030 PF06463 Molybdenum Cofactor Synthesis C XPE_07035 PF12706 Beta-lactamase superfamily domain XPE_07035 PF00753 Metallo-beta-lactamase superfamily XPE_07045 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XPE_07090 PF03389 MobA/MobL family XPE_07090 PF16793 RepB DNA-primase from phage plasmid XPE_07110 PF00929 Exonuclease XPE_07115 PF00075 RNase H XPE_07125 PF16123 Hydroxyacylglutathione hydrolase C-terminus XPE_07125 PF00753 Metallo-beta-lactamase superfamily XPE_07130 PF01476 LysM domain XPE_07130 PF05257 CHAP domain XPE_07155 PF00216 Bacterial DNA-binding protein XPE_07160 PF00004 ATPase family associated with various cellular activities (AAA) XPE_07160 PF05362 Lon protease (S16) C-terminal proteolytic domain XPE_07160 PF02190 ATP-dependent protease La (LON) substrate-binding domain XPE_07165 PF06689 ClpX C4-type zinc finger XPE_07165 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_07165 PF07724 AAA domain (Cdc48 subfamily) XPE_07170 PF00574 Clp protease XPE_07175 PF05698 Bacterial trigger factor protein (TF) C-terminus XPE_07175 PF05697 Bacterial trigger factor protein (TF) XPE_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_07185 PF00989 PAS fold XPE_07185 PF00512 His Kinase A (phospho-acceptor) domain XPE_07215 PF18324 Hypothetical protein TT1725 XPE_07215 PF00180 Isocitrate/isopropylmalate dehydrogenase XPE_07225 PF00462 Glutaredoxin XPE_07230 PF13181 Tetratricopeptide repeat XPE_07230 PF01435 Peptidase family M48 XPE_07235 PF00072 Response regulator receiver domain XPE_07235 PF00486 Transcriptional regulatory protein, C terminal XPE_07240 PF00989 PAS fold XPE_07240 PF11808 Phosphate regulon sensor protein PhoR XPE_07240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_07240 PF00512 His Kinase A (phospho-acceptor) domain XPE_07245 PF13090 Polyphosphate kinase C-terminal domain 2 XPE_07245 PF02503 Polyphosphate kinase middle domain XPE_07245 PF13089 Polyphosphate kinase N-terminal domain XPE_07245 PF17941 Polyphosphate kinase C-terminal domain 1 XPE_07250 PF02541 Ppx/GppA phosphatase family XPE_07255 PF13439 Glycosyltransferase Family 4 XPE_07255 PF00534 Glycosyl transferases group 1 XPE_07260 PF01569 PAP2 superfamily XPE_07265 PF00149 Calcineurin-like phosphoesterase XPE_07280 PF04305 Protein of unknown function (DUF455) XPE_07290 PF00156 Phosphoribosyl transferase domain XPE_07305 PF08245 Mur ligase middle domain XPE_07305 PF02875 Mur ligase family, glutamate ligase domain XPE_07310 PF00300 Histidine phosphatase superfamily (branch 1) XPE_07315 PF10459 Peptidase S46 XPE_07320 PF05506 Domain of unknown function (DUF756) XPE_07320 PF04185 Phosphoesterase family XPE_07330 PF08240 Alcohol dehydrogenase GroES-like domain XPE_07330 PF00107 Zinc-binding dehydrogenase XPE_07345 PF00005 ABC transporter XPE_07345 PF17850 CysA C-terminal regulatory domain XPE_07345 PF12857 TOBE-like domain XPE_07350 PF00528 Binding-protein-dependent transport system inner membrane component XPE_07355 PF00528 Binding-protein-dependent transport system inner membrane component XPE_07365 PF00155 Aminotransferase class I and II XPE_07375 PF00849 RNA pseudouridylate synthase XPE_07385 PF00223 Photosystem I psaA/psaB protein XPE_07385 PF00691 OmpA family XPE_07390 PF08240 Alcohol dehydrogenase GroES-like domain XPE_07390 PF00107 Zinc-binding dehydrogenase XPE_07395 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_07395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XPE_07415 PF02798 Glutathione S-transferase, N-terminal domain XPE_07415 PF00043 Glutathione S-transferase, C-terminal domain XPE_07420 PF00056 lactate/malate dehydrogenase, NAD binding domain XPE_07420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XPE_07425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XPE_07440 PF01425 Amidase XPE_07450 PF01474 Class-II DAHP synthetase family XPE_07470 PF02600 Disulfide bond formation protein DsbB XPE_07475 PF01196 Ribosomal protein L17 XPE_07480 PF01000 RNA polymerase Rpb3/RpoA insert domain XPE_07480 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XPE_07480 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XPE_07485 PF01479 S4 domain XPE_07485 PF00163 Ribosomal protein S4/S9 N-terminal domain XPE_07490 PF00411 Ribosomal protein S11 XPE_07495 PF00416 Ribosomal protein S13/S18 XPE_07500 PF00344 SecY translocase XPE_07505 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XPE_07510 PF00327 Ribosomal protein L30p/L7e XPE_07515 PF03719 Ribosomal protein S5, C-terminal domain XPE_07515 PF00333 Ribosomal protein S5, N-terminal domain XPE_07520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XPE_07525 PF00347 Ribosomal protein L6 XPE_07530 PF00410 Ribosomal protein S8 XPE_07535 PF00253 Ribosomal protein S14p/S29e XPE_07540 PF00281 Ribosomal protein L5 XPE_07540 PF00673 ribosomal L5P family C-terminus XPE_07545 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XPE_07545 PF00467 KOW motif XPE_07550 PF00238 Ribosomal protein L14p/L23e XPE_07555 PF00366 Ribosomal protein S17 XPE_07560 PF00831 Ribosomal L29 protein XPE_07565 PF00252 Ribosomal protein L16p/L10e XPE_07570 PF00189 Ribosomal protein S3, C-terminal domain XPE_07570 PF07650 KH domain XPE_07575 PF00237 Ribosomal protein L22p/L17e XPE_07580 PF00203 Ribosomal protein S19 XPE_07585 PF03947 Ribosomal Proteins L2, C-terminal domain XPE_07585 PF00181 Ribosomal Proteins L2, RNA binding domain XPE_07590 PF00276 Ribosomal protein L23 XPE_07595 PF00573 Ribosomal protein L4/L1 family XPE_07600 PF00297 Ribosomal protein L3 XPE_07605 PF00338 Ribosomal protein S10p/S20e XPE_07620 PF00009 Elongation factor Tu GTP binding domain XPE_07620 PF03143 Elongation factor Tu C-terminal domain XPE_07620 PF03144 Elongation factor Tu domain 2 XPE_07625 PF03144 Elongation factor Tu domain 2 XPE_07625 PF03764 Elongation factor G, domain IV XPE_07625 PF00009 Elongation factor Tu GTP binding domain XPE_07625 PF14492 Elongation Factor G, domain II XPE_07625 PF00679 Elongation factor G C-terminus XPE_07630 PF00177 Ribosomal protein S7p/S5e XPE_07635 PF00164 Ribosomal protein S12/S23 XPE_07640 PF04997 RNA polymerase Rpb1, domain 1 XPE_07640 PF04998 RNA polymerase Rpb1, domain 5 XPE_07640 PF05000 RNA polymerase Rpb1, domain 4 XPE_07640 PF04983 RNA polymerase Rpb1, domain 3 XPE_07640 PF00623 RNA polymerase Rpb1, domain 2 XPE_07645 PF10385 RNA polymerase beta subunit external 1 domain XPE_07645 PF00562 RNA polymerase Rpb2, domain 6 XPE_07645 PF04565 RNA polymerase Rpb2, domain 3 XPE_07645 PF04560 RNA polymerase Rpb2, domain 7 XPE_07645 PF04561 RNA polymerase Rpb2, domain 2 XPE_07645 PF04563 RNA polymerase beta subunit XPE_07650 PF00542 Ribosomal protein L7/L12 C-terminal domain XPE_07650 PF16320 Ribosomal protein L7/L12 dimerisation domain XPE_07655 PF00466 Ribosomal protein L10 XPE_07660 PF00687 Ribosomal protein L1p/L10e family XPE_07665 PF03946 Ribosomal protein L11, N-terminal domain XPE_07665 PF00298 Ribosomal protein L11, RNA binding domain XPE_07670 PF00467 KOW motif XPE_07670 PF02357 Transcription termination factor nusG XPE_07675 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XPE_07685 PF03143 Elongation factor Tu C-terminal domain XPE_07685 PF03144 Elongation factor Tu domain 2 XPE_07685 PF00009 Elongation factor Tu GTP binding domain XPE_07705 PF01926 50S ribosome-binding GTPase XPE_07705 PF06071 Protein of unknown function (DUF933) XPE_07710 PF01195 Peptidyl-tRNA hydrolase XPE_07715 PF14693 Ribosomal protein TL5, C-terminal domain XPE_07715 PF01386 Ribosomal L25p family XPE_07720 PF14572 Phosphoribosyl synthetase-associated domain XPE_07720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XPE_07730 PF08544 GHMP kinases C terminal XPE_07730 PF00288 GHMP kinases N terminal domain XPE_07735 PF03550 Outer membrane lipoprotein LolB XPE_07745 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XPE_07745 PF01488 Shikimate / quinate 5-dehydrogenase XPE_07745 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XPE_07750 PF00472 RF-1 domain XPE_07750 PF03462 PCRF domain XPE_07765 PF00994 Probable molybdopterin binding domain XPE_07770 PF03976 Polyphosphate kinase 2 (PPK2) XPE_07780 PF00708 Acylphosphatase XPE_07785 PF08534 Redoxin XPE_07790 PF03631 Virulence factor BrkB XPE_07795 PF03358 NADPH-dependent FMN reductase XPE_07805 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain XPE_07805 PF17189 Glycosyl hydrolase family 30 beta sandwich domain XPE_07815 PF04073 Aminoacyl-tRNA editing domain XPE_07820 PF04151 Bacterial pre-peptidase C-terminal domain XPE_07820 PF00082 Subtilase family XPE_07830 PF04151 Bacterial pre-peptidase C-terminal domain XPE_07830 PF00082 Subtilase family XPE_07835 PF01063 Amino-transferase class IV XPE_07850 PF02233 NAD(P) transhydrogenase beta subunit XPE_07855 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XPE_07875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XPE_07875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XPE_07875 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XPE_07890 PF01367 5'-3' exonuclease, C-terminal SAM fold XPE_07890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XPE_07890 PF00476 DNA polymerase family A XPE_07890 PF01612 3'-5' exonuclease XPE_07895 PF00293 NUDIX domain XPE_07905 PF00561 alpha/beta hydrolase fold XPE_07910 PF05175 Methyltransferase small domain XPE_07910 PF17827 PrmC N-terminal domain XPE_07915 PF10417 C-terminal domain of 1-Cys peroxiredoxin XPE_07915 PF00578 AhpC/TSA family XPE_07920 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_07920 PF13192 Thioredoxin domain XPE_07925 PF03466 LysR substrate binding domain XPE_07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_07935 PF14760 Rnk N-terminus XPE_07935 PF01272 Transcription elongation factor, GreA/GreB, C-term XPE_07940 PF00923 Transaldolase/Fructose-6-phosphate aldolase XPE_07950 PF01625 Peptide methionine sulfoxide reductase XPE_07960 PF00196 Bacterial regulatory proteins, luxR family XPE_07960 PF00072 Response regulator receiver domain XPE_07965 PF00672 HAMP domain XPE_07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_07965 PF01627 Hpt domain XPE_07965 PF00072 Response regulator receiver domain XPE_07965 PF17149 Periplasmic sensor domain found in signal transduction proteins XPE_07965 PF00512 His Kinase A (phospho-acceptor) domain XPE_07970 PF00072 Response regulator receiver domain XPE_07985 PF00749 tRNA synthetases class I (E and Q), catalytic domain XPE_07985 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XPE_07995 PF00892 EamA-like transporter family XPE_08020 PF01728 FtsJ-like methyltransferase XPE_08020 PF18125 RlmM ferredoxin-like domain XPE_08025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XPE_08025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XPE_08030 PF08450 SMP-30/Gluconolactonase/LRE-like region XPE_08050 PF00378 Enoyl-CoA hydratase/isomerase XPE_08055 PF00171 Aldehyde dehydrogenase family XPE_08060 PF00501 AMP-binding enzyme XPE_08060 PF13193 AMP-binding enzyme C-terminal domain XPE_08065 PF03466 LysR substrate binding domain XPE_08065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_08070 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XPE_08070 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XPE_08075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XPE_08080 PF00392 Bacterial regulatory proteins, gntR family XPE_08080 PF07729 FCD domain XPE_08100 PF01494 FAD binding domain XPE_08105 PF01494 FAD binding domain XPE_08120 PF01923 Cobalamin adenosyltransferase XPE_08125 PF00850 Histone deacetylase domain XPE_08130 PF04453 LPS transport system D XPE_08130 PF03968 OstA-like protein XPE_08135 PF00639 PPIC-type PPIASE domain XPE_08135 PF09312 SurA N-terminal domain XPE_08140 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XPE_08145 PF00398 Ribosomal RNA adenine dimethylase XPE_08150 PF04379 ApaG domain XPE_08155 PF00149 Calcineurin-like phosphoesterase XPE_08160 PF00186 Dihydrofolate reductase XPE_08170 PF00303 Thymidylate synthase XPE_08175 PF01790 Prolipoprotein diacylglyceryl transferase XPE_08195 PF01219 Prokaryotic diacylglycerol kinase XPE_08205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_08205 PF08521 Two-component sensor kinase N-terminal XPE_08205 PF00512 His Kinase A (phospho-acceptor) domain XPE_08210 PF00486 Transcriptional regulatory protein, C terminal XPE_08210 PF00072 Response regulator receiver domain XPE_08215 PF13472 GDSL-like Lipase/Acylhydrolase family XPE_08220 PF00005 ABC transporter XPE_08230 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XPE_08240 PF00005 ABC transporter XPE_08245 PF00528 Binding-protein-dependent transport system inner membrane component XPE_08265 PF00593 TonB dependent receptor XPE_08265 PF07715 TonB-dependent Receptor Plug Domain XPE_08275 PF00248 Aldo/keto reductase family XPE_08285 PF07662 Na+ dependent nucleoside transporter C-terminus XPE_08285 PF07670 Nucleoside recognition XPE_08285 PF01773 Na+ dependent nucleoside transporter N-terminus XPE_08290 PF00294 pfkB family carbohydrate kinase XPE_08300 PF01207 Dihydrouridine synthase (Dus) XPE_08305 PF13649 Methyltransferase domain XPE_08315 PF02773 S-adenosylmethionine synthetase, C-terminal domain XPE_08315 PF02772 S-adenosylmethionine synthetase, central domain XPE_08315 PF00438 S-adenosylmethionine synthetase, N-terminal domain XPE_08320 PF00328 Histidine phosphatase superfamily (branch 2) XPE_08335 PF01389 OmpA-like transmembrane domain XPE_08335 PF00691 OmpA family XPE_08355 PF00311 Phosphoenolpyruvate carboxylase XPE_08365 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XPE_08365 PF05221 S-adenosyl-L-homocysteine hydrolase XPE_08370 PF13649 Methyltransferase domain XPE_08400 PF00128 Alpha amylase, catalytic domain XPE_08405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XPE_08415 PF00082 Subtilase family XPE_08415 PF09286 Pro-kumamolisin, activation domain XPE_08420 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_08420 PF00698 Acyl transferase domain XPE_08420 PF16197 Ketoacyl-synthetase C-terminal extension XPE_08420 PF00107 Zinc-binding dehydrogenase XPE_08420 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_08420 PF08659 KR domain XPE_08420 PF14765 Polyketide synthase dehydratase XPE_08420 PF00550 Phosphopantetheine attachment site XPE_08420 PF08240 Alcohol dehydrogenase GroES-like domain XPE_08435 PF02219 Methylenetetrahydrofolate reductase XPE_08445 PF00293 NUDIX domain XPE_08450 PF02810 SEC-C motif XPE_08450 PF07517 SecA DEAD-like domain XPE_08450 PF01043 SecA preprotein cross-linking domain XPE_08450 PF07516 SecA Wing and Scaffold domain XPE_08455 PF01476 LysM domain XPE_08455 PF01551 Peptidase family M23 XPE_08455 PF08525 Opacity-associated protein A N-terminal motif XPE_08465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XPE_08470 PF00091 Tubulin/FtsZ family, GTPase domain XPE_08470 PF12327 FtsZ family, C-terminal domain XPE_08475 PF02491 SHS2 domain inserted in FTSA XPE_08480 PF08478 POTRA domain, FtsQ-type XPE_08480 PF03799 Cell division protein FtsQ XPE_08485 PF07478 D-ala D-ala ligase C-terminus XPE_08485 PF01820 D-ala D-ala ligase N-terminus XPE_08490 PF02875 Mur ligase family, glutamate ligase domain XPE_08490 PF01225 Mur ligase family, catalytic domain XPE_08490 PF08245 Mur ligase middle domain XPE_08495 PF03033 Glycosyltransferase family 28 N-terminal domain XPE_08495 PF04101 Glycosyltransferase family 28 C-terminal domain XPE_08500 PF01098 Cell cycle protein XPE_08505 PF00953 Glycosyl transferase family 4 XPE_08510 PF08245 Mur ligase middle domain XPE_08510 PF02875 Mur ligase family, glutamate ligase domain XPE_08510 PF01225 Mur ligase family, catalytic domain XPE_08515 PF02875 Mur ligase family, glutamate ligase domain XPE_08515 PF08245 Mur ligase middle domain XPE_08515 PF01225 Mur ligase family, catalytic domain XPE_08520 PF03717 Penicillin-binding Protein dimerisation domain XPE_08520 PF00905 Penicillin binding protein transpeptidase domain XPE_08525 PF04999 Cell division protein FtsL XPE_08530 PF01795 MraW methylase family XPE_08535 PF02381 MraZ protein, putative antitoxin-like XPE_08560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XPE_08570 PF02021 Uncharacterised protein family UPF0102 XPE_08575 PF04307 LexA-binding, inner membrane-associated putative hydrolase XPE_08580 PF02913 FAD linked oxidases, C-terminal domain XPE_08580 PF01565 FAD binding domain XPE_08590 PF00072 Response regulator receiver domain XPE_08590 PF00486 Transcriptional regulatory protein, C terminal XPE_08595 PF02702 Osmosensitive K+ channel His kinase sensor domain XPE_08595 PF13493 Domain of unknown function (DUF4118) XPE_08595 PF00512 His Kinase A (phospho-acceptor) domain XPE_08595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_08595 PF13492 GAF domain XPE_08600 PF02669 K+-transporting ATPase, c chain XPE_08610 PF03814 Potassium-transporting ATPase A subunit XPE_08640 PF02769 AIR synthase related protein, C-terminal domain XPE_08640 PF00586 AIR synthase related protein, N-terminal domain XPE_08645 PF01029 NusB family XPE_08650 PF00885 6,7-dimethyl-8-ribityllumazine synthase XPE_08655 PF00925 GTP cyclohydrolase II XPE_08655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XPE_08660 PF00677 Lumazine binding domain XPE_08670 PF01872 RibD C-terminal domain XPE_08670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XPE_08680 PF03477 ATP cone domain XPE_08685 PF00464 Serine hydroxymethyltransferase XPE_08695 PF12848 ABC transporter XPE_08695 PF00005 ABC transporter XPE_08705 PF00756 Putative esterase XPE_08710 PF04828 Glutathione-dependent formaldehyde-activating enzyme XPE_08715 PF08240 Alcohol dehydrogenase GroES-like domain XPE_08715 PF00107 Zinc-binding dehydrogenase XPE_08720 PF02583 Metal-sensitive transcriptional repressor XPE_08735 PF00072 Response regulator receiver domain XPE_08735 PF00486 Transcriptional regulatory protein, C terminal XPE_08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_08740 PF00672 HAMP domain XPE_08740 PF00512 His Kinase A (phospho-acceptor) domain XPE_08745 PF04107 Glutamate-cysteine ligase family 2(GCS2) XPE_08750 PF01926 50S ribosome-binding GTPase XPE_08755 PF00034 Cytochrome c XPE_08765 PF01323 DSBA-like thioredoxin domain XPE_08780 PF02028 BCCT, betaine/carnitine/choline family transporter XPE_08785 PF00171 Aldehyde dehydrogenase family XPE_08790 PF05199 GMC oxidoreductase XPE_08790 PF00732 GMC oxidoreductase XPE_08795 PF01966 HD domain XPE_08795 PF01743 Poly A polymerase head domain XPE_08795 PF12627 Probable RNA and SrmB- binding site of polymerase A XPE_08810 PF01979 Amidohydrolase family XPE_08815 PF01380 SIS domain XPE_08820 PF00356 Bacterial regulatory proteins, lacI family XPE_08825 PF07690 Major Facilitator Superfamily XPE_08850 PF03934 Type II secretion system (T2SS), protein K XPE_08855 PF07963 Prokaryotic N-terminal methylation motif XPE_08855 PF11612 Type II secretion system (T2SS), protein J XPE_08860 PF02501 Type II secretion system (T2SS), protein I XPE_08860 PF07963 Prokaryotic N-terminal methylation motif XPE_08865 PF12019 Type II transport protein GspH XPE_08865 PF07963 Prokaryotic N-terminal methylation motif XPE_08870 PF07963 Prokaryotic N-terminal methylation motif XPE_08870 PF08334 Type II secretion system (T2SS), protein G XPE_08875 PF00482 Type II secretion system (T2SS), protein F XPE_08880 PF00437 Type II/IV secretion system protein XPE_08885 PF00263 Bacterial type II and III secretion system protein XPE_08885 PF03958 Bacterial type II/III secretion system short domain XPE_08930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XPE_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_08935 PF00512 His Kinase A (phospho-acceptor) domain XPE_08940 PF00072 Response regulator receiver domain XPE_08945 PF01590 GAF domain XPE_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_08945 PF00512 His Kinase A (phospho-acceptor) domain XPE_08945 PF08446 PAS fold XPE_08945 PF00360 Phytochrome region XPE_08950 PF04972 BON domain XPE_08955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XPE_08955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XPE_08960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XPE_08960 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XPE_08995 PF01467 Cytidylyltransferase-like XPE_08995 PF00293 NUDIX domain XPE_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_09005 PF03466 LysR substrate binding domain XPE_09015 PF11818 C-terminal domain of tail specific protease (DUF3340) XPE_09015 PF00595 PDZ domain XPE_09015 PF17804 Tail specific protease N-terminal domain XPE_09015 PF03572 Peptidase family S41 XPE_09020 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XPE_09020 PF04055 Radical SAM superfamily XPE_09025 PF03099 Biotin/lipoate A/B protein ligase family XPE_09030 PF04359 Protein of unknown function (DUF493) XPE_09040 PF07943 Penicillin-binding protein 5, C-terminal domain XPE_09040 PF00768 D-alanyl-D-alanine carboxypeptidase XPE_09050 PF05036 Sporulation related domain XPE_09050 PF03330 Lytic transglycolase XPE_09055 PF13406 Transglycosylase SLT domain XPE_09060 PF00295 Glycosyl hydrolases family 28 XPE_09070 PF01098 Cell cycle protein XPE_09075 PF00905 Penicillin binding protein transpeptidase domain XPE_09075 PF03717 Penicillin-binding Protein dimerisation domain XPE_09085 PF04085 rod shape-determining protein MreC XPE_09095 PF00294 pfkB family carbohydrate kinase XPE_09100 PF02954 Bacterial regulatory protein, Fis family XPE_09100 PF00158 Sigma-54 interaction domain XPE_09100 PF01590 GAF domain XPE_09110 PF00107 Zinc-binding dehydrogenase XPE_09110 PF08240 Alcohol dehydrogenase GroES-like domain XPE_09130 PF13360 PQQ-like domain XPE_09150 PF11838 ERAP1-like C-terminal domain XPE_09150 PF01433 Peptidase family M1 domain XPE_09155 PF03707 Bacterial signalling protein N terminal repeat XPE_09155 PF00990 Diguanylate cyclase, GGDEF domain XPE_09155 PF00563 EAL domain XPE_09160 PF01209 ubiE/COQ5 methyltransferase family XPE_09170 PF13533 Biotin-lipoyl like XPE_09175 PF13673 Acetyltransferase (GNAT) domain XPE_09185 PF07724 AAA domain (Cdc48 subfamily) XPE_09185 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_09185 PF00004 ATPase family associated with various cellular activities (AAA) XPE_09190 PF00227 Proteasome subunit XPE_09195 PF02899 Phage integrase, N-terminal SAM-like domain XPE_09195 PF00589 Phage integrase family XPE_09205 PF01678 Diaminopimelate epimerase XPE_09215 PF04304 Protein of unknown function (DUF454) XPE_09220 PF00326 Prolyl oligopeptidase family XPE_09220 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XPE_09225 PF00155 Aminotransferase class I and II XPE_09230 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XPE_09230 PF00326 Prolyl oligopeptidase family XPE_09270 PF03900 Porphobilinogen deaminase, C-terminal domain XPE_09270 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XPE_09275 PF00072 Response regulator receiver domain XPE_09275 PF04397 LytTr DNA-binding domain XPE_09280 PF06580 Histidine kinase XPE_09280 PF07694 5TMR of 5TMR-LYT XPE_09290 PF13632 Glycosyl transferase family group 2 XPE_09305 PF00990 Diguanylate cyclase, GGDEF domain XPE_09305 PF08448 PAS fold XPE_09310 PF01740 STAS domain XPE_09310 PF00916 Sulfate permease family XPE_09315 PF00150 Cellulase (glycosyl hydrolase family 5) XPE_09315 PF00553 Cellulose binding domain XPE_09320 PF00672 HAMP domain XPE_09320 PF02203 Tar ligand binding domain homologue XPE_09320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_09325 PF03707 Bacterial signalling protein N terminal repeat XPE_09325 PF00563 EAL domain XPE_09325 PF00990 Diguanylate cyclase, GGDEF domain XPE_09345 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XPE_09345 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XPE_09355 PF01204 Trehalase XPE_09370 PF01544 CorA-like Mg2+ transporter protein XPE_09380 PF00324 Amino acid permease XPE_09395 PF00497 Bacterial extracellular solute-binding proteins, family 3 XPE_09400 PF00892 EamA-like transporter family XPE_09420 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_09425 PF02082 Transcriptional regulator XPE_09430 PF00990 Diguanylate cyclase, GGDEF domain XPE_09430 PF05230 MASE2 domain XPE_09435 PF07759 Protein of unknown function (DUF1615) XPE_09480 PF13409 Glutathione S-transferase, N-terminal domain XPE_09490 PF00106 short chain dehydrogenase XPE_09545 PF01527 Transposase XPE_09550 PF13276 HTH-like domain XPE_09550 PF13683 Integrase core domain XPE_09650 PF17831 Pyruvate dehydrogenase E1 component middle domain XPE_09650 PF00456 Transketolase, thiamine diphosphate binding domain XPE_09685 PF13419 Haloacid dehalogenase-like hydrolase XPE_09690 PF07729 FCD domain XPE_09690 PF00392 Bacterial regulatory proteins, gntR family XPE_09700 PF00698 Acyl transferase domain XPE_09705 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XPE_09710 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XPE_09720 PF01039 Carboxyl transferase domain XPE_09725 PF06857 Malonate decarboxylase delta subunit (MdcD) XPE_09730 PF16957 Malonate decarboxylase, alpha subunit, transporter XPE_09750 PF04264 YceI-like domain XPE_09755 PF00881 Nitroreductase family XPE_09785 PF02592 Putative vitamin uptake transporter XPE_09790 PF08335 GlnD PII-uridylyltransferase XPE_09790 PF03710 Glutamate-ammonia ligase adenylyltransferase XPE_09815 PF00793 DAHP synthetase I family XPE_09820 PF00593 TonB dependent receptor XPE_09820 PF07715 TonB-dependent Receptor Plug Domain XPE_09830 PF00118 TCP-1/cpn60 chaperonin family XPE_09835 PF00166 Chaperonin 10 Kd subunit XPE_09845 PF04231 Endonuclease I XPE_09855 PF03091 CutA1 divalent ion tolerance protein XPE_09860 PF02683 Cytochrome C biogenesis protein transmembrane region XPE_09860 PF11412 Disulphide bond corrector protein DsbC XPE_09865 PF01220 Dehydroquinase class II XPE_09870 PF00364 Biotin-requiring enzyme XPE_09880 PF00289 Biotin carboxylase, N-terminal domain XPE_09880 PF02785 Biotin carboxylase C-terminal domain XPE_09880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XPE_09910 PF01381 Helix-turn-helix XPE_09925 PF02954 Bacterial regulatory protein, Fis family XPE_09955 PF00782 Dual specificity phosphatase, catalytic domain XPE_09960 PF12147 Putative methyltransferase XPE_09960 PF12146 Serine aminopeptidase, S33 XPE_09965 PF01066 CDP-alcohol phosphatidyltransferase XPE_09970 PF02142 MGS-like domain XPE_09970 PF01808 AICARFT/IMPCHase bienzyme XPE_09980 PF02843 Phosphoribosylglycinamide synthetase, C domain XPE_09980 PF02844 Phosphoribosylglycinamide synthetase, N domain XPE_09980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XPE_09985 PF12805 FUSC-like inner membrane protein yccS XPE_09990 PF07690 Major Facilitator Superfamily XPE_10015 PF03186 CobD/Cbib protein XPE_10015 PF17113 Regulatory signalling modulator protein AmpE XPE_10020 PF00293 NUDIX domain XPE_10020 PF09297 NADH pyrophosphatase zinc ribbon domain XPE_10020 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XPE_10035 PF01521 Iron-sulphur cluster biosynthesis XPE_10055 PF00486 Transcriptional regulatory protein, C terminal XPE_10055 PF00072 Response regulator receiver domain XPE_10060 PF01627 Hpt domain XPE_10060 PF00512 His Kinase A (phospho-acceptor) domain XPE_10060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_10060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XPE_10060 PF00672 HAMP domain XPE_10060 PF00072 Response regulator receiver domain XPE_10065 PF00210 Ferritin-like domain XPE_10075 PF00293 NUDIX domain XPE_10090 PF00380 Ribosomal protein S9/S16 XPE_10095 PF00572 Ribosomal protein L13 XPE_10100 PF03232 Ubiquinone biosynthesis protein COQ7 XPE_10105 PF00893 Small Multidrug Resistance protein XPE_10110 PF02675 S-adenosylmethionine decarboxylase XPE_10115 PF00325 Bacterial regulatory proteins, crp family XPE_10115 PF00027 Cyclic nucleotide-binding domain XPE_10125 PF00218 Indole-3-glycerol phosphate synthase XPE_10130 PF00591 Glycosyl transferase family, a/b domain XPE_10130 PF02885 Glycosyl transferase family, helical bundle domain XPE_10140 PF00117 Glutamine amidotransferase class-I XPE_10155 PF00425 chorismate binding enzyme XPE_10155 PF04715 Anthranilate synthase component I, N terminal region XPE_10160 PF00781 Diacylglycerol kinase catalytic domain XPE_10165 PF00583 Acetyltransferase (GNAT) family XPE_10170 PF00834 Ribulose-phosphate 3 epimerase family XPE_10175 PF05099 Tellurite resistance protein TerB XPE_10175 PF00226 DnaJ domain XPE_10180 PF01259 SAICAR synthetase XPE_10200 PF00182 Chitinase class I XPE_10205 PF02868 Thermolysin metallopeptidase, alpha-helical domain XPE_10205 PF01447 Thermolysin metallopeptidase, catalytic domain XPE_10205 PF01483 Proprotein convertase P-domain XPE_10205 PF07504 Fungalysin/Thermolysin Propeptide Motif XPE_10220 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XPE_10220 PF00361 Proton-conducting membrane transporter XPE_10220 PF13244 Domain of unknown function (DUF4040) XPE_10220 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XPE_10225 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XPE_10230 PF00361 Proton-conducting membrane transporter XPE_10240 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XPE_10245 PF03334 Na+/H+ antiporter subunit XPE_10260 PF04209 homogentisate 1,2-dioxygenase XPE_10265 PF04480 Protein of unknown function (DUF559) XPE_10270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XPE_10275 PF01047 MarR family XPE_10285 PF00854 POT family XPE_10290 PF03301 Tryptophan 2,3-dioxygenase XPE_10300 PF00676 Dehydrogenase E1 component XPE_10305 PF02780 Transketolase, C-terminal domain XPE_10305 PF02779 Transketolase, pyrimidine binding domain XPE_10315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XPE_10315 PF02817 e3 binding domain XPE_10315 PF00364 Biotin-requiring enzyme XPE_10330 PF00271 Helicase conserved C-terminal domain XPE_10330 PF00270 DEAD/DEAH box helicase XPE_10350 PF00873 AcrB/AcrD/AcrF family XPE_10365 PF02321 Outer membrane efflux protein XPE_10370 PF06903 VirK protein XPE_10390 PF13460 NAD(P)H-binding XPE_10395 PF00128 Alpha amylase, catalytic domain XPE_10395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XPE_10405 PF00128 Alpha amylase, catalytic domain XPE_10410 PF02446 4-alpha-glucanotransferase XPE_10415 PF00128 Alpha amylase, catalytic domain XPE_10415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XPE_10415 PF11941 Domain of unknown function (DUF3459) XPE_10420 PF00128 Alpha amylase, catalytic domain XPE_10420 PF02806 Alpha amylase, C-terminal all-beta domain XPE_10420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XPE_10425 PF08323 Starch synthase catalytic domain XPE_10425 PF00534 Glycosyl transferases group 1 XPE_10430 PF00072 Response regulator receiver domain XPE_10430 PF00990 Diguanylate cyclase, GGDEF domain XPE_10435 PF05661 Protein of unknown function (DUF808) XPE_10445 PF03109 ABC1 family XPE_10455 PF00884 Sulfatase XPE_10460 PF12794 Mechanosensitive ion channel inner membrane domain 1 XPE_10460 PF12795 Mechanosensitive ion channel porin domain XPE_10460 PF00924 Mechanosensitive ion channel XPE_10480 PF01464 Transglycosylase SLT domain XPE_10495 PF01527 Transposase XPE_10520 PF01311 Bacterial export proteins, family 1 XPE_10530 PF02874 ATP synthase alpha/beta family, beta-barrel domain XPE_10530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XPE_10530 PF18269 T3SS EscN ATPase C-terminal domain XPE_10545 PF01514 Secretory protein of YscJ/FliF family XPE_10560 PF01312 FlhB HrpN YscU SpaS Family XPE_10565 PF00771 FHIPEP family XPE_10580 PF00813 FliP family XPE_10585 PF01313 Bacterial export proteins, family 3 XPE_10620 PF05819 NolX protein XPE_10640 PF01040 UbiA prenyltransferase family XPE_10650 PF06968 Biotin and Thiamin Synthesis associated domain XPE_10650 PF04055 Radical SAM superfamily XPE_10655 PF00155 Aminotransferase class I and II XPE_10665 PF12697 Alpha/beta hydrolase family XPE_10670 PF00106 short chain dehydrogenase XPE_10675 PF13649 Methyltransferase domain XPE_10695 PF00291 Pyridoxal-phosphate dependent enzyme XPE_10710 PF13932 GidA associated domain XPE_10710 PF01134 Glucose inhibited division protein A XPE_10715 PF10677 Protein of unknown function (DUF2490) XPE_10720 PF07859 alpha/beta hydrolase fold XPE_10730 PF09339 IclR helix-turn-helix domain XPE_10730 PF01614 Bacterial transcriptional regulator XPE_10745 PF02627 Carboxymuconolactone decarboxylase family XPE_10750 PF12146 Serine aminopeptidase, S33 XPE_10755 PF10397 Adenylosuccinate lyase C-terminus XPE_10755 PF00206 Lyase XPE_10765 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XPE_10765 PF00775 Dioxygenase XPE_10770 PF00108 Thiolase, N-terminal domain XPE_10770 PF02803 Thiolase, C-terminal domain XPE_10775 PF01144 Coenzyme A transferase XPE_10780 PF01144 Coenzyme A transferase XPE_10785 PF00355 Rieske [2Fe-2S] domain XPE_10795 PF08220 DeoR-like helix-turn-helix domain XPE_10795 PF00455 DeoR C terminal sensor domain XPE_10800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XPE_10800 PF01266 FAD dependent oxidoreductase XPE_10805 PF00230 Major intrinsic protein XPE_10810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XPE_10810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XPE_10820 PF01494 FAD binding domain XPE_10830 PF00171 Aldehyde dehydrogenase family XPE_10850 PF01966 HD domain XPE_10850 PF11871 Domain of unknown function (DUF3391) XPE_10855 PF07690 Major Facilitator Superfamily XPE_10865 PF00132 Bacterial transferase hexapeptide (six repeats) XPE_10880 PF00920 Dehydratase family XPE_10885 PF13495 Phage integrase, N-terminal SAM-like domain XPE_10885 PF00589 Phage integrase family XPE_10900 PF13683 Integrase core domain XPE_10900 PF13276 HTH-like domain XPE_10905 PF01527 Transposase XPE_10910 PF13276 HTH-like domain XPE_10910 PF13683 Integrase core domain XPE_10920 PF01527 Transposase XPE_10985 PF01638 HxlR-like helix-turn-helix XPE_10990 PF05368 NmrA-like family XPE_11000 PF03812 2-keto-3-deoxygluconate permease XPE_11010 PF01717 Cobalamin-independent synthase, Catalytic domain XPE_11010 PF08267 Cobalamin-independent synthase, N-terminal domain XPE_11020 PF03358 NADPH-dependent FMN reductase XPE_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_11025 PF03466 LysR substrate binding domain XPE_11030 PF02677 Epoxyqueuosine reductase QueH XPE_11045 PF02321 Outer membrane efflux protein XPE_11050 PF00873 AcrB/AcrD/AcrF family XPE_11055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_11055 PF00529 HlyD membrane-fusion protein of T1SS XPE_11060 PF00512 His Kinase A (phospho-acceptor) domain XPE_11060 PF00672 HAMP domain XPE_11060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_11065 PF00072 Response regulator receiver domain XPE_11065 PF00486 Transcriptional regulatory protein, C terminal XPE_11070 PF00551 Formyl transferase XPE_11080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XPE_11080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XPE_11085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XPE_11090 PF02146 Sir2 family XPE_11095 PF00561 alpha/beta hydrolase fold XPE_11095 PF08386 TAP-like protein XPE_11105 PF07690 Major Facilitator Superfamily XPE_11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_11110 PF03466 LysR substrate binding domain XPE_11125 PF01026 TatD related DNase XPE_11130 PF03466 LysR substrate binding domain XPE_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_11135 PF00355 Rieske [2Fe-2S] domain XPE_11140 PF00111 2Fe-2S iron-sulfur cluster binding domain XPE_11150 PF00860 Permease family XPE_11160 PF01156 Inosine-uridine preferring nucleoside hydrolase XPE_11165 PF01425 Amidase XPE_11185 PF00561 alpha/beta hydrolase fold XPE_11190 PF03466 LysR substrate binding domain XPE_11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_11195 PF07687 Peptidase dimerisation domain XPE_11195 PF01546 Peptidase family M20/M25/M40 XPE_11200 PF00266 Aminotransferase class-V XPE_11215 PF01014 Uricase XPE_11215 PF09349 OHCU decarboxylase XPE_11220 PF13454 FAD-NAD(P)-binding XPE_11225 PF00576 HIUase/Transthyretin family XPE_11230 PF07308 Protein of unknown function (DUF1456) XPE_11240 PF08482 ATP-dependent helicase C-terminal XPE_11240 PF00271 Helicase conserved C-terminal domain XPE_11240 PF04408 Helicase associated domain (HA2) XPE_11240 PF00270 DEAD/DEAH box helicase XPE_11250 PF00849 RNA pseudouridylate synthase XPE_11265 PF16884 N-terminal domain of oxidoreductase XPE_11265 PF00107 Zinc-binding dehydrogenase XPE_11285 PF02566 OsmC-like protein XPE_11290 PF01047 MarR family XPE_11295 PF03969 AFG1-like ATPase XPE_11315 PF02492 CobW/HypB/UreG, nucleotide-binding domain XPE_11315 PF07683 Cobalamin synthesis protein cobW C-terminal domain XPE_11375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_11375 PF02770 Acyl-CoA dehydrogenase, middle domain XPE_11375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_11380 PF01039 Carboxyl transferase domain XPE_11385 PF02785 Biotin carboxylase C-terminal domain XPE_11385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XPE_11385 PF00289 Biotin carboxylase, N-terminal domain XPE_11385 PF00364 Biotin-requiring enzyme XPE_11390 PF00326 Prolyl oligopeptidase family XPE_11410 PF00990 Diguanylate cyclase, GGDEF domain XPE_11415 PF00463 Isocitrate lyase family XPE_11420 PF01274 Malate synthase XPE_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_11425 PF03466 LysR substrate binding domain XPE_11430 PF00999 Sodium/hydrogen exchanger family XPE_11435 PF12833 Helix-turn-helix domain XPE_11455 PF12706 Beta-lactamase superfamily domain XPE_11460 PF01432 Peptidase family M3 XPE_11465 PF01112 Asparaginase XPE_11475 PF00472 RF-1 domain XPE_11485 PF00849 RNA pseudouridylate synthase XPE_11495 PF03109 ABC1 family XPE_11515 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XPE_11520 PF00501 AMP-binding enzyme XPE_11525 PF03692 Putative zinc- or iron-chelating domain XPE_11530 PF00561 alpha/beta hydrolase fold XPE_11535 PF02661 Fic/DOC family XPE_11535 PF13784 Fic/DOC family N-terminal XPE_11540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XPE_11540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XPE_11555 PF00588 SpoU rRNA Methylase family XPE_11560 PF07690 Major Facilitator Superfamily XPE_11575 PF02954 Bacterial regulatory protein, Fis family XPE_11575 PF00158 Sigma-54 interaction domain XPE_11575 PF00072 Response regulator receiver domain XPE_11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_11580 PF00512 His Kinase A (phospho-acceptor) domain XPE_11585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XPE_11585 PF00205 Thiamine pyrophosphate enzyme, central domain XPE_11585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XPE_11600 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XPE_11600 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XPE_11605 PF02556 Preprotein translocase subunit SecB XPE_11610 PF00581 Rhodanese-like domain XPE_11645 PF00108 Thiolase, N-terminal domain XPE_11645 PF02803 Thiolase, C-terminal domain XPE_11655 PF03544 Gram-negative bacterial TonB protein C-terminal XPE_11660 PF00080 Copper/zinc superoxide dismutase (SODC) XPE_11665 PF00080 Copper/zinc superoxide dismutase (SODC) XPE_11670 PF02954 Bacterial regulatory protein, Fis family XPE_11670 PF00072 Response regulator receiver domain XPE_11670 PF00158 Sigma-54 interaction domain XPE_11675 PF00989 PAS fold XPE_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_11675 PF00512 His Kinase A (phospho-acceptor) domain XPE_11680 PF00909 Ammonium Transporter Family XPE_11685 PF00543 Nitrogen regulatory protein P-II XPE_11690 PF03951 Glutamine synthetase, beta-Grasp domain XPE_11690 PF00120 Glutamine synthetase, catalytic domain XPE_11700 PF02673 Bacitracin resistance protein BacA XPE_11710 PF08240 Alcohol dehydrogenase GroES-like domain XPE_11710 PF00107 Zinc-binding dehydrogenase XPE_11740 PF03061 Thioesterase superfamily XPE_11745 PF13091 PLD-like domain XPE_11760 PF01883 Iron-sulfur cluster assembly protein XPE_11760 PF10609 NUBPL iron-transfer P-loop NTPase XPE_11800 PF12867 DinB superfamily XPE_11800 PF03781 Sulfatase-modifying factor enzyme 1 XPE_11810 PF00528 Binding-protein-dependent transport system inner membrane component XPE_11815 PF00005 ABC transporter XPE_11830 PF00005 ABC transporter XPE_11840 PF01546 Peptidase family M20/M25/M40 XPE_11840 PF07687 Peptidase dimerisation domain XPE_11845 PF01734 Patatin-like phospholipase XPE_11850 PF07660 Secretin and TonB N terminus short domain XPE_11850 PF07715 TonB-dependent Receptor Plug Domain XPE_11850 PF00593 TonB dependent receptor XPE_11855 PF01037 Lrp/AsnC ligand binding domain XPE_11860 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XPE_11870 PF00657 GDSL-like Lipase/Acylhydrolase XPE_11885 PF04962 KduI/IolB family XPE_11890 PF00356 Bacterial regulatory proteins, lacI family XPE_11895 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XPE_11895 PF04616 Glycosyl hydrolases family 43 XPE_11900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XPE_11910 PF03480 Bacterial extracellular solute-binding protein, family 7 XPE_11920 PF13472 GDSL-like Lipase/Acylhydrolase family XPE_11920 PF07859 alpha/beta hydrolase fold XPE_11925 PF00135 Carboxylesterase family XPE_11930 PF00248 Aldo/keto reductase family XPE_11945 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XPE_11945 PF00128 Alpha amylase, catalytic domain XPE_11945 PF02806 Alpha amylase, C-terminal all-beta domain XPE_11950 PF00128 Alpha amylase, catalytic domain XPE_11950 PF16657 Maltogenic Amylase, C-terminal domain XPE_11955 PF00128 Alpha amylase, catalytic domain XPE_11955 PF11896 Domain of unknown function (DUF3416) XPE_12030 PF00294 pfkB family carbohydrate kinase XPE_12040 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XPE_12040 PF07055 Enoyl reductase FAD binding domain XPE_12040 PF12241 Trans-2-enoyl-CoA reductase catalytic region XPE_12045 PF00486 Transcriptional regulatory protein, C terminal XPE_12045 PF18500 CadC C-terminal domain 1 XPE_12065 PF00072 Response regulator receiver domain XPE_12065 PF00196 Bacterial regulatory proteins, luxR family XPE_12070 PF07730 Histidine kinase XPE_12075 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family XPE_12090 PF01070 FMN-dependent dehydrogenase XPE_12095 PF02735 Ku70/Ku80 beta-barrel domain XPE_12115 PF00171 Aldehyde dehydrogenase family XPE_12130 PF00593 TonB dependent receptor XPE_12130 PF07715 TonB-dependent Receptor Plug Domain XPE_12135 PF00155 Aminotransferase class I and II XPE_12140 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XPE_12190 PF17863 AAA lid domain XPE_12190 PF07726 ATPase family associated with various cellular activities (AAA) XPE_12230 PF00083 Sugar (and other) transporter XPE_12230 PF08946 Osmosensory transporter coiled coil XPE_12240 PF00085 Thioredoxin XPE_12255 PF13344 Haloacid dehalogenase-like hydrolase XPE_12255 PF00293 NUDIX domain XPE_12265 PF01447 Thermolysin metallopeptidase, catalytic domain XPE_12265 PF02868 Thermolysin metallopeptidase, alpha-helical domain XPE_12265 PF16485 Protealysin propeptide XPE_12285 PF05532 CsbD-like XPE_12325 PF02525 Flavodoxin-like fold XPE_12335 PF03466 LysR substrate binding domain XPE_12335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_12345 PF00106 short chain dehydrogenase XPE_12365 PF03006 Haemolysin-III related XPE_12370 PF00271 Helicase conserved C-terminal domain XPE_12370 PF09369 Domain of unknown function (DUF1998) XPE_12370 PF00270 DEAD/DEAH box helicase XPE_12435 PF03466 LysR substrate binding domain XPE_12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_12445 PF01804 Penicillin amidase XPE_12465 PF01493 GXGXG motif XPE_12465 PF01645 Conserved region in glutamate synthase XPE_12465 PF04898 Glutamate synthase central domain XPE_12465 PF00310 Glutamine amidotransferases class-II XPE_12470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XPE_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_12480 PF00107 Zinc-binding dehydrogenase XPE_12480 PF08240 Alcohol dehydrogenase GroES-like domain XPE_12490 PF00150 Cellulase (glycosyl hydrolase family 5) XPE_12495 PF00150 Cellulase (glycosyl hydrolase family 5) XPE_12500 PF00150 Cellulase (glycosyl hydrolase family 5) XPE_12510 PF04389 Peptidase family M28 XPE_12520 PF01551 Peptidase family M23 XPE_12525 PF13180 PDZ domain XPE_12525 PF03572 Peptidase family S41 XPE_12545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XPE_12555 PF04055 Radical SAM superfamily XPE_12570 PF13396 Phospholipase_D-nuclease N-terminal XPE_12570 PF13091 PLD-like domain XPE_12580 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XPE_12585 PF02472 Biopolymer transport protein ExbD/TolR XPE_12590 PF02472 Biopolymer transport protein ExbD/TolR XPE_12595 PF02472 Biopolymer transport protein ExbD/TolR XPE_12600 PF01618 MotA/TolQ/ExbB proton channel family XPE_12605 PF03544 Gram-negative bacterial TonB protein C-terminal XPE_12615 PF01435 Peptidase family M48 XPE_12625 PF00986 DNA gyrase B subunit, carboxyl terminus XPE_12625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_12625 PF00204 DNA gyrase B XPE_12625 PF18053 DNA gyrase B subunit insert domain XPE_12625 PF01751 Toprim domain XPE_12630 PF02463 RecF/RecN/SMC N terminal domain XPE_12635 PF02768 DNA polymerase III beta subunit, C-terminal domain XPE_12635 PF02767 DNA polymerase III beta subunit, central domain XPE_12635 PF00712 DNA polymerase III beta subunit, N-terminal domain XPE_12640 PF08299 Bacterial dnaA protein helix-turn-helix XPE_12640 PF00308 Bacterial dnaA protein XPE_12640 PF11638 DnaA N-terminal domain XPE_12650 PF00468 Ribosomal protein L34 XPE_12655 PF00825 Ribonuclease P XPE_12660 PF14849 YidC periplasmic domain XPE_12660 PF02096 60Kd inner membrane protein XPE_12665 PF01522 Polysaccharide deacetylase XPE_12670 PF12631 MnmE helical domain XPE_12670 PF01926 50S ribosome-binding GTPase XPE_12670 PF10396 GTP-binding protein TrmE N-terminus XPE_12675 PF01569 PAP2 superfamily XPE_12685 PF03009 Glycerophosphoryl diester phosphodiesterase family XPE_12690 PF01694 Rhomboid family XPE_12700 PF03741 Integral membrane protein TerC family XPE_12705 PF17785 PUA-like domain XPE_12705 PF10672 S-adenosylmethionine-dependent methyltransferase XPE_12720 PF07690 Major Facilitator Superfamily XPE_12725 PF02595 Glycerate kinase family XPE_12730 PF17853 GGDEF-like domain XPE_12730 PF13556 PucR C-terminal helix-turn-helix domain XPE_12730 PF05651 Putative sugar diacid recognition XPE_12735 PF00990 Diguanylate cyclase, GGDEF domain XPE_12740 PF10947 Protein of unknown function (DUF2628) XPE_12745 PF00593 TonB dependent receptor XPE_12745 PF07715 TonB-dependent Receptor Plug Domain XPE_12750 PF17678 Glycosyl hydrolase family 92 N-terminal domain XPE_12750 PF07971 Glycosyl hydrolase family 92 XPE_12755 PF13520 Amino acid permease XPE_12775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_12775 PF03466 LysR substrate binding domain XPE_12780 PF00107 Zinc-binding dehydrogenase XPE_12780 PF08240 Alcohol dehydrogenase GroES-like domain XPE_12785 PF02646 RmuC family XPE_12795 PF00255 Glutathione peroxidase XPE_12805 PF04333 MlaA lipoprotein XPE_12815 PF05494 MlaC protein XPE_12820 PF02470 MlaD protein XPE_12825 PF02405 Permease MlaE XPE_12830 PF00005 ABC transporter XPE_12865 PF17946 RecC C-terminal domain XPE_12870 PF00580 UvrD/REP helicase N-terminal domain XPE_12870 PF13361 UvrD-like helicase C-terminal domain XPE_12870 PF12705 PD-(D/E)XK nuclease superfamily XPE_12875 PF13538 UvrD-like helicase C-terminal domain XPE_12880 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB XPE_12885 PF01381 Helix-turn-helix XPE_12935 PF00440 Bacterial regulatory proteins, tetR family XPE_12985 PF00849 RNA pseudouridylate synthase XPE_13045 PF13396 Phospholipase_D-nuclease N-terminal XPE_13045 PF13091 PLD-like domain XPE_13050 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family XPE_13055 PF00106 short chain dehydrogenase XPE_13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_13060 PF03466 LysR substrate binding domain XPE_13070 PF00083 Sugar (and other) transporter XPE_13075 PF04632 Fusaric acid resistance protein family XPE_13085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_13085 PF00529 HlyD membrane-fusion protein of T1SS XPE_13090 PF07869 Protein of unknown function (DUF1656) XPE_13100 PF01227 GTP cyclohydrolase I XPE_13120 PF01925 Sulfite exporter TauE/SafE XPE_13125 PF02810 SEC-C motif XPE_13135 PF01263 Aldose 1-epimerase XPE_13140 PF07690 Major Facilitator Superfamily XPE_13145 PF01126 Heme oxygenase XPE_13150 PF00360 Phytochrome region XPE_13150 PF13426 PAS domain XPE_13150 PF08446 PAS fold XPE_13150 PF01590 GAF domain XPE_13155 PF03594 Benzoate membrane transport protein XPE_13185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XPE_13185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XPE_13185 PF06827 Zinc finger found in FPG and IleRS XPE_13195 PF04349 Periplasmic glucan biosynthesis protein, MdoG XPE_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_13200 PF00360 Phytochrome region XPE_13200 PF00512 His Kinase A (phospho-acceptor) domain XPE_13200 PF08446 PAS fold XPE_13200 PF01590 GAF domain XPE_13205 PF00265 Thymidine kinase XPE_13210 PF13361 UvrD-like helicase C-terminal domain XPE_13210 PF00580 UvrD/REP helicase N-terminal domain XPE_13225 PF04337 Protein of unknown function, DUF480 XPE_13235 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XPE_13240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XPE_13245 PF04820 Tryptophan halogenase XPE_13260 PF00356 Bacterial regulatory proteins, lacI family XPE_13270 PF01553 Acyltransferase XPE_13280 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_13280 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_13280 PF16197 Ketoacyl-synthetase C-terminal extension XPE_13280 PF00698 Acyl transferase domain XPE_13280 PF00107 Zinc-binding dehydrogenase XPE_13280 PF08659 KR domain XPE_13280 PF14765 Polyketide synthase dehydratase XPE_13280 PF08240 Alcohol dehydrogenase GroES-like domain XPE_13280 PF00550 Phosphopantetheine attachment site XPE_13310 PF04616 Glycosyl hydrolases family 43 XPE_13330 PF00331 Glycosyl hydrolase family 10 XPE_13330 PF03422 Carbohydrate binding module (family 6) XPE_13330 PF00553 Cellulose binding domain XPE_13340 PF00553 Cellulose binding domain XPE_13340 PF00331 Glycosyl hydrolase family 10 XPE_13340 PF03422 Carbohydrate binding module (family 6) XPE_13345 PF02614 Glucuronate isomerase XPE_13350 PF00703 Glycosyl hydrolases family 2 XPE_13350 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XPE_13350 PF02837 Glycosyl hydrolases family 2, sugar binding domain XPE_13350 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XPE_13350 PF16355 Domain of unknown function (DUF4982) XPE_13355 PF00331 Glycosyl hydrolase family 10 XPE_13360 PF08450 SMP-30/Gluconolactonase/LRE-like region XPE_13375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XPE_13375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XPE_13385 PF00202 Aminotransferase class-III XPE_13400 PF00171 Aldehyde dehydrogenase family XPE_13435 PF08125 Mannitol dehydrogenase C-terminal domain XPE_13435 PF01232 Mannitol dehydrogenase Rossmann domain XPE_13440 PF14310 Fibronectin type III-like domain XPE_13440 PF07691 PA14 domain XPE_13440 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_13440 PF01915 Glycosyl hydrolase family 3 C-terminal domain XPE_13445 PF04616 Glycosyl hydrolases family 43 XPE_13445 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XPE_13450 PF13378 Enolase C-terminal domain-like XPE_13450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XPE_13460 PF07488 Glycosyl hydrolase family 67 middle domain XPE_13460 PF07477 Glycosyl hydrolase family 67 C-terminus XPE_13460 PF03648 Glycosyl hydrolase family 67 N-terminus XPE_13465 PF00356 Bacterial regulatory proteins, lacI family XPE_13475 PF01171 PP-loop family XPE_13480 PF04381 Putative exonuclease, RdgC XPE_13495 PF12697 Alpha/beta hydrolase family XPE_13500 PF00762 Ferrochelatase XPE_13510 PF02416 mttA/Hcf106 family XPE_13515 PF02416 mttA/Hcf106 family XPE_13520 PF00902 Sec-independent protein translocase protein (TatC) XPE_13530 PF00117 Glutamine amidotransferase class-I XPE_13530 PF00958 GMP synthase C terminal domain XPE_13545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XPE_13545 PF00437 Type II/IV secretion system protein XPE_13550 PF02091 Glycyl-tRNA synthetase alpha subunit XPE_13555 PF05746 DALR anticodon binding domain XPE_13555 PF02092 Glycyl-tRNA synthetase beta subunit XPE_13560 PF13181 Tetratricopeptide repeat XPE_13570 PF00593 TonB dependent receptor XPE_13570 PF07715 TonB-dependent Receptor Plug Domain XPE_13575 PF01103 Surface antigen XPE_13575 PF17243 POTRA domain TamA domain 1 XPE_13580 PF04357 TamB, inner membrane protein subunit of TAM complex XPE_13605 PF05593 RHS Repeat XPE_13605 PF03527 RHS protein XPE_13610 PF01527 Transposase XPE_13640 PF13360 PQQ-like domain XPE_13640 PF01011 PQQ enzyme repeat XPE_13640 PF13570 PQQ-like domain XPE_13660 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XPE_13660 PF06165 Glycosyltransferase family 36 XPE_13675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_13675 PF00512 His Kinase A (phospho-acceptor) domain XPE_13680 PF02659 Putative manganese efflux pump XPE_13690 PF01614 Bacterial transcriptional regulator XPE_13690 PF09339 IclR helix-turn-helix domain XPE_13695 PF07690 Major Facilitator Superfamily XPE_13700 PF05336 L-rhamnose mutarotase XPE_13705 PF13378 Enolase C-terminal domain-like XPE_13705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XPE_13715 PF01557 Fumarylacetoacetate (FAA) hydrolase family XPE_13730 PF00248 Aldo/keto reductase family XPE_13740 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XPE_13740 PF04616 Glycosyl hydrolases family 43 XPE_13770 PF00196 Bacterial regulatory proteins, luxR family XPE_13770 PF00072 Response regulator receiver domain XPE_13775 PF16177 Acetyl-coenzyme A synthetase N-terminus XPE_13775 PF00501 AMP-binding enzyme XPE_13775 PF13193 AMP-binding enzyme C-terminal domain XPE_13785 PF04341 Protein of unknown function, DUF485 XPE_13790 PF00474 Sodium:solute symporter family XPE_13800 PF03372 Endonuclease/Exonuclease/phosphatase family XPE_13810 PF04226 Transglycosylase associated protein XPE_13815 PF01648 4'-phosphopantetheinyl transferase superfamily XPE_13820 PF16655 PhoD-like phosphatase, N-terminal domain XPE_13820 PF09423 PhoD-like phosphatase XPE_13825 PF09423 PhoD-like phosphatase XPE_13825 PF16655 PhoD-like phosphatase, N-terminal domain XPE_13830 PF02527 rRNA small subunit methyltransferase G XPE_13855 PF13533 Biotin-lipoyl like XPE_13860 PF00873 AcrB/AcrD/AcrF family XPE_13870 PF00830 Ribosomal L28 family XPE_13875 PF00471 Ribosomal protein L33 XPE_13880 PF04909 Amidohydrolase XPE_13890 PF04303 PrpF protein XPE_13895 PF03737 Aldolase/RraA XPE_13900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_13900 PF03466 LysR substrate binding domain XPE_13905 PF13091 PLD-like domain XPE_13905 PF13396 Phospholipase_D-nuclease N-terminal XPE_13920 PF13361 UvrD-like helicase C-terminal domain XPE_13920 PF00580 UvrD/REP helicase N-terminal domain XPE_13930 PF12464 Maltose acetyltransferase XPE_13930 PF14602 Hexapeptide repeat of succinyl-transferase XPE_13955 PF05638 Type VI secretion system effector, Hcp XPE_13985 PF00004 ATPase family associated with various cellular activities (AAA) XPE_13985 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_13985 PF17871 AAA lid domain XPE_13985 PF07724 AAA domain (Cdc48 subfamily) XPE_14025 PF00328 Histidine phosphatase superfamily (branch 2) XPE_14045 PF08281 Sigma-70, region 4 XPE_14045 PF04542 Sigma-70 region 2 XPE_14055 PF00069 Protein kinase domain XPE_14055 PF03793 PASTA domain XPE_14070 PF04717 Type VI secretion system, phage-baseplate injector XPE_14070 PF16671 Actin cross-linking domain XPE_14085 PF03466 LysR substrate binding domain XPE_14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_14090 PF00248 Aldo/keto reductase family XPE_14120 PF00069 Protein kinase domain XPE_14150 PF01612 3'-5' exonuclease XPE_14150 PF00476 DNA polymerase family A XPE_14150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XPE_14150 PF01367 5'-3' exonuclease, C-terminal SAM fold XPE_14155 PF01218 Coproporphyrinogen III oxidase XPE_14195 PF04820 Tryptophan halogenase XPE_14200 PF00550 Phosphopantetheine attachment site XPE_14210 PF01553 Acyltransferase XPE_14215 PF07977 FabA-like domain XPE_14275 PF00535 Glycosyl transferase family 2 XPE_14285 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_14285 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_14290 PF05166 YcgL domain XPE_14300 PF00723 Glycosyl hydrolases family 15 XPE_14305 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XPE_14305 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XPE_14310 PF00999 Sodium/hydrogen exchanger family XPE_14310 PF02254 TrkA-N domain XPE_14320 PF00194 Eukaryotic-type carbonic anhydrase XPE_14330 PF00571 CBS domain XPE_14330 PF01769 Divalent cation transporter XPE_14330 PF03448 MgtE intracellular N domain XPE_14335 PF13607 Succinyl-CoA ligase like flavodoxin domain XPE_14335 PF00583 Acetyltransferase (GNAT) family XPE_14335 PF13380 CoA binding domain XPE_14350 PF02867 Ribonucleotide reductase, barrel domain XPE_14350 PF00317 Ribonucleotide reductase, all-alpha domain XPE_14350 PF03477 ATP cone domain XPE_14360 PF00268 Ribonucleotide reductase, small chain XPE_14365 PF00258 Flavodoxin XPE_14390 PF02558 Ketopantoate reductase PanE/ApbA XPE_14390 PF08546 Ketopantoate reductase PanE/ApbA C terminal XPE_14395 PF01061 ABC-2 type transporter XPE_14400 PF00005 ABC transporter XPE_14405 PF01383 CpcD/allophycocyanin linker domain XPE_14405 PF00175 Oxidoreductase NAD-binding domain XPE_14410 PF01545 Cation efflux family XPE_14415 PF02583 Metal-sensitive transcriptional repressor XPE_14420 PF01229 Glycosyl hydrolases family 39 XPE_14430 PF01381 Helix-turn-helix XPE_14440 PF00005 ABC transporter XPE_14455 PF04820 Tryptophan halogenase XPE_14475 PF00043 Glutathione S-transferase, C-terminal domain XPE_14475 PF02798 Glutathione S-transferase, N-terminal domain XPE_14480 PF00326 Prolyl oligopeptidase family XPE_14480 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XPE_14505 PF00490 Delta-aminolevulinic acid dehydratase XPE_14515 PF00667 FAD binding domain XPE_14515 PF00175 Oxidoreductase NAD-binding domain XPE_14515 PF00258 Flavodoxin XPE_14525 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XPE_14525 PF01488 Shikimate / quinate 5-dehydrogenase XPE_14525 PF08501 Shikimate dehydrogenase substrate binding domain XPE_14540 PF13307 Helicase C-terminal domain XPE_14540 PF06733 DEAD_2 XPE_14550 PF00199 Catalase XPE_14550 PF06628 Catalase-related immune-responsive XPE_14575 PF01207 Dihydrouridine synthase (Dus) XPE_14585 PF00072 Response regulator receiver domain XPE_14585 PF00486 Transcriptional regulatory protein, C terminal XPE_14590 PF00512 His Kinase A (phospho-acceptor) domain XPE_14590 PF00672 HAMP domain XPE_14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_14605 PF06167 Glucose-regulated metallo-peptidase M90 XPE_14620 PF08279 HTH domain XPE_14620 PF03099 Biotin/lipoate A/B protein ligase family XPE_14620 PF02237 Biotin protein ligase C terminal domain XPE_14625 PF03309 Type III pantothenate kinase XPE_14640 PF02223 Thymidylate kinase XPE_14665 PF00491 Arginase family XPE_14680 PF05532 CsbD-like XPE_14685 PF00579 tRNA synthetases class I (W and Y) XPE_14690 PF00753 Metallo-beta-lactamase superfamily XPE_14710 PF00892 EamA-like transporter family XPE_14715 PF00892 EamA-like transporter family XPE_14735 PF00005 ABC transporter XPE_14740 PF13533 Biotin-lipoyl like XPE_14745 PF07730 Histidine kinase XPE_14750 PF00072 Response regulator receiver domain XPE_14750 PF00196 Bacterial regulatory proteins, luxR family XPE_14765 PF00199 Catalase XPE_14770 PF04542 Sigma-70 region 2 XPE_14770 PF08281 Sigma-70, region 4 XPE_14780 PF00883 Cytosol aminopeptidase family, catalytic domain XPE_14780 PF02789 Cytosol aminopeptidase family, N-terminal domain XPE_14785 PF13419 Haloacid dehalogenase-like hydrolase XPE_14790 PF01594 AI-2E family transporter XPE_14810 PF00595 PDZ domain XPE_14830 PF08521 Two-component sensor kinase N-terminal XPE_14830 PF00512 His Kinase A (phospho-acceptor) domain XPE_14830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_14835 PF00486 Transcriptional regulatory protein, C terminal XPE_14835 PF00072 Response regulator receiver domain XPE_14840 PF01370 NAD dependent epimerase/dehydratase family XPE_14840 PF08338 Domain of unknown function (DUF1731) XPE_14875 PF01139 tRNA-splicing ligase RtcB XPE_14895 PF00440 Bacterial regulatory proteins, tetR family XPE_14900 PF00175 Oxidoreductase NAD-binding domain XPE_14900 PF00111 2Fe-2S iron-sulfur cluster binding domain XPE_14900 PF00970 Oxidoreductase FAD-binding domain XPE_14905 PF00487 Fatty acid desaturase XPE_14910 PF00563 EAL domain XPE_14910 PF12792 CSS motif domain associated with EAL XPE_14925 PF13335 Magnesium chelatase, subunit ChlI C-terminal XPE_14925 PF01078 Magnesium chelatase, subunit ChlI XPE_14930 PF04380 Membrane fusogenic activity XPE_14935 PF00543 Nitrogen regulatory protein P-II XPE_14945 PF00963 Cohesin domain XPE_14945 PF02838 Glycosyl hydrolase family 20, domain 2 XPE_14945 PF00754 F5/8 type C domain XPE_14945 PF00041 Fibronectin type III domain XPE_14945 PF07555 beta-N-acetylglucosaminidase XPE_14965 PF17284 Spermidine synthase tetramerisation domain XPE_14970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XPE_14970 PF17944 Arginine decarboxylase C-terminal helical extension XPE_14970 PF17810 Arginine decarboxylase helical bundle domain XPE_14975 PF00550 Phosphopantetheine attachment site XPE_14975 PF13193 AMP-binding enzyme C-terminal domain XPE_14975 PF00975 Thioesterase domain XPE_14975 PF00501 AMP-binding enzyme XPE_14975 PF00668 Condensation domain XPE_14980 PF03033 Glycosyltransferase family 28 N-terminal domain XPE_14985 PF01757 Acyltransferase family XPE_14990 PF00106 short chain dehydrogenase XPE_15005 PF03485 Arginyl tRNA synthetase N terminal domain XPE_15005 PF05746 DALR anticodon binding domain XPE_15005 PF00750 tRNA synthetases class I (R) XPE_15010 PF04002 RadC-like JAB domain XPE_15015 PF02441 Flavoprotein XPE_15015 PF04127 DNA / pantothenate metabolism flavoprotein XPE_15020 PF00692 dUTPase XPE_15025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XPE_15025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XPE_15025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XPE_15025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XPE_15040 PF00535 Glycosyl transferase family 2 XPE_15045 PF01370 NAD dependent epimerase/dehydratase family XPE_15055 PF17762 HTH domain found in ParB protein XPE_15055 PF02195 ParB-like nuclease domain XPE_15060 PF13614 AAA domain XPE_15070 PF00156 Phosphoribosyl transferase domain XPE_15075 PF03372 Endonuclease/Exonuclease/phosphatase family XPE_15080 PF07690 Major Facilitator Superfamily XPE_15090 PF03702 Anhydro-N-acetylmuramic acid kinase XPE_15095 PF01551 Peptidase family M23 XPE_15095 PF04225 Opacity-associated protein A LysM-like domain XPE_15100 PF00579 tRNA synthetases class I (W and Y) XPE_15130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XPE_15130 PF14850 DNA-binding domain of Proline dehydrogenase XPE_15130 PF01619 Proline dehydrogenase XPE_15130 PF00171 Aldehyde dehydrogenase family XPE_15140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XPE_15140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XPE_15145 PF00115 Cytochrome C and Quinol oxidase polypeptide I XPE_15155 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XPE_15160 PF00510 Cytochrome c oxidase subunit III XPE_15185 PF01040 UbiA prenyltransferase family XPE_15195 PF13593 SBF-like CPA transporter family (DUF4137) XPE_15200 PF08278 DNA primase DnaG DnaB-binding XPE_15200 PF08275 DNA primase catalytic core, N-terminal domain XPE_15200 PF01807 CHC2 zinc finger XPE_15200 PF10410 DnaB-helicase binding domain of primase XPE_15205 PF03631 Virulence factor BrkB XPE_15215 PF09424 Yqey-like protein XPE_15220 PF01165 Ribosomal protein S21 XPE_15225 PF00814 Glycoprotease family XPE_15230 PF02152 Dihydroneopterin aldolase XPE_15235 PF14310 Fibronectin type III-like domain XPE_15235 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_15235 PF01915 Glycosyl hydrolase family 3 C-terminal domain XPE_15240 PF07995 Glucose / Sorbosone dehydrogenase XPE_15260 PF13520 Amino acid permease XPE_15270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XPE_15270 PF13378 Enolase C-terminal domain-like XPE_15280 PF01510 N-acetylmuramoyl-L-alanine amidase XPE_15285 PF01427 D-ala-D-ala dipeptidase XPE_15330 PF07063 Domain of unknown function (DUF1338) XPE_15335 PF00873 AcrB/AcrD/AcrF family XPE_15340 PF00873 AcrB/AcrD/AcrF family XPE_15345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_15350 PF07687 Peptidase dimerisation domain XPE_15350 PF01546 Peptidase family M20/M25/M40 XPE_15355 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XPE_15355 PF14489 QueF-like protein XPE_15360 PF01476 LysM domain XPE_15360 PF04972 BON domain XPE_15370 PF03971 Monomeric isocitrate dehydrogenase XPE_15380 PF03466 LysR substrate binding domain XPE_15380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_15385 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XPE_15400 PF07497 Rho termination factor, RNA-binding domain XPE_15400 PF07498 Rho termination factor, N-terminal domain XPE_15400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XPE_15405 PF00085 Thioredoxin XPE_15410 PF12300 ATP-dependent RNA helicase RhlB XPE_15410 PF00271 Helicase conserved C-terminal domain XPE_15410 PF00270 DEAD/DEAH box helicase XPE_15415 PF00005 ABC transporter XPE_15420 PF18075 FtsX extracellular domain XPE_15425 PF00072 Response regulator receiver domain XPE_15430 PF03167 Uracil DNA glycosylase superfamily XPE_15435 PF04545 Sigma-70, region 4 XPE_15435 PF04542 Sigma-70 region 2 XPE_15440 PF03458 UPF0126 domain XPE_15445 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_15460 PF13417 Glutathione S-transferase, N-terminal domain XPE_15460 PF00043 Glutathione S-transferase, C-terminal domain XPE_15465 PF00271 Helicase conserved C-terminal domain XPE_15465 PF17764 3′ DNA-binding domain (3′BD) XPE_15465 PF18074 Primosomal protein N C-terminal domain XPE_15465 PF00270 DEAD/DEAH box helicase XPE_15465 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XPE_15485 PF01554 MatE XPE_15490 PF01343 Peptidase family S49 XPE_15520 PF01300 Telomere recombination XPE_15525 PF01751 Toprim domain XPE_15525 PF13368 Topoisomerase C-terminal repeat XPE_15525 PF01131 DNA topoisomerase XPE_15535 PF07963 Prokaryotic N-terminal methylation motif XPE_15535 PF00114 Pilin (bacterial filament) XPE_15540 PF04361 Protein of unknown function (DUF494) XPE_15545 PF17782 DprA winged helix domain XPE_15545 PF02481 DNA recombination-mediator protein A XPE_15550 PF01476 LysM domain XPE_15555 PF01327 Polypeptide deformylase XPE_15560 PF02911 Formyl transferase, C-terminal domain XPE_15560 PF00551 Formyl transferase XPE_15565 PF01029 NusB family XPE_15565 PF01189 16S rRNA methyltransferase RsmB/F XPE_15580 PF00535 Glycosyl transferase family 2 XPE_15600 PF00925 GTP cyclohydrolase II XPE_15615 PF03279 Bacterial lipid A biosynthesis acyltransferase XPE_15620 PF02580 D-Tyr-tRNA(Tyr) deacylase XPE_15625 PF00140 Sigma-70 factor, region 1.2 XPE_15625 PF04546 Sigma-70, non-essential region XPE_15625 PF04542 Sigma-70 region 2 XPE_15625 PF04539 Sigma-70 region 3 XPE_15625 PF03979 Sigma-70 factor, region 1.1 XPE_15625 PF04545 Sigma-70, region 4 XPE_15800 PF03421 YopJ Serine/Threonine acetyltransferase XPE_15875 PF01555 DNA methylase XPE_15900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_15900 PF03466 LysR substrate binding domain XPE_15910 PF00557 Metallopeptidase family M24 XPE_15920 PF00654 Voltage gated chloride channel XPE_15925 PF00916 Sulfate permease family XPE_15925 PF01740 STAS domain XPE_15955 PF02525 Flavodoxin-like fold XPE_15960 PF03466 LysR substrate binding domain XPE_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_15980 PF01042 Endoribonuclease L-PSP XPE_15985 PF03466 LysR substrate binding domain XPE_15985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_15995 PF00005 ABC transporter XPE_16010 PF07715 TonB-dependent Receptor Plug Domain XPE_16010 PF00593 TonB dependent receptor XPE_16055 PF00107 Zinc-binding dehydrogenase XPE_16055 PF08240 Alcohol dehydrogenase GroES-like domain XPE_16055 PF13823 Alcohol dehydrogenase GroES-associated XPE_16070 PF00005 ABC transporter XPE_16070 PF00664 ABC transporter transmembrane region XPE_16080 PF03275 UDP-galactopyranose mutase XPE_16090 PF16363 GDP-mannose 4,6 dehydratase XPE_16110 PF02322 Cytochrome bd terminal oxidase subunit II XPE_16115 PF01654 Cytochrome bd terminal oxidase subunit I XPE_16130 PF00072 Response regulator receiver domain XPE_16130 PF00158 Sigma-54 interaction domain XPE_16130 PF02954 Bacterial regulatory protein, Fis family XPE_16145 PF01739 CheR methyltransferase, SAM binding domain XPE_16145 PF01339 CheB methylesterase XPE_16145 PF03705 CheR methyltransferase, all-alpha domain XPE_16145 PF08448 PAS fold XPE_16165 PF05067 Manganese containing catalase XPE_16170 PF05974 Domain of unknown function (DUF892) XPE_16190 PF02743 Cache domain XPE_16190 PF00672 HAMP domain XPE_16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_16190 PF06580 Histidine kinase XPE_16195 PF04397 LytTr DNA-binding domain XPE_16195 PF00072 Response regulator receiver domain XPE_16205 PF13520 Amino acid permease XPE_16220 PF05649 Peptidase family M13 XPE_16220 PF01431 Peptidase family M13 XPE_16235 PF00248 Aldo/keto reductase family XPE_16240 PF03358 NADPH-dependent FMN reductase XPE_16245 PF03466 LysR substrate binding domain XPE_16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_16250 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XPE_16260 PF03167 Uracil DNA glycosylase superfamily XPE_16265 PF02469 Fasciclin domain XPE_16275 PF00999 Sodium/hydrogen exchanger family XPE_16280 PF00005 ABC transporter XPE_16285 PF01061 ABC-2 type transporter XPE_16310 PF13677 Membrane MotB of proton-channel complex MotA/MotB XPE_16310 PF00691 OmpA family XPE_16315 PF01618 MotA/TolQ/ExbB proton channel family XPE_16325 PF01641 SelR domain XPE_16335 PF01037 Lrp/AsnC ligand binding domain XPE_16340 PF01266 FAD dependent oxidoreductase XPE_16345 PF01168 Alanine racemase, N-terminal domain XPE_16345 PF00842 Alanine racemase, C-terminal domain XPE_16365 PF00512 His Kinase A (phospho-acceptor) domain XPE_16365 PF00989 PAS fold XPE_16365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_16375 PF07995 Glucose / Sorbosone dehydrogenase XPE_16385 PF05175 Methyltransferase small domain XPE_16385 PF08468 Methyltransferase small domain N-terminal XPE_16390 PF01479 S4 domain XPE_16390 PF00849 RNA pseudouridylate synthase XPE_16395 PF13419 Haloacid dehalogenase-like hydrolase XPE_16420 PF00989 PAS fold XPE_16420 PF00512 His Kinase A (phospho-acceptor) domain XPE_16420 PF18415 Histidine kinase receptor ArcB trans-membrane domain XPE_16420 PF01627 Hpt domain XPE_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_16420 PF00072 Response regulator receiver domain XPE_16430 PF04461 Protein of unknown function (DUF520) XPE_16435 PF00892 EamA-like transporter family XPE_16440 PF00005 ABC transporter XPE_16440 PF09383 NIL domain XPE_16445 PF00528 Binding-protein-dependent transport system inner membrane component XPE_16450 PF03180 NLPA lipoprotein XPE_16485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XPE_16485 PF00364 Biotin-requiring enzyme XPE_16485 PF02817 e3 binding domain XPE_16495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XPE_16495 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_16515 PF00119 ATP synthase A chain XPE_16520 PF00137 ATP synthase subunit C XPE_16525 PF00430 ATP synthase B/B' CF(0) XPE_16530 PF00213 ATP synthase delta (OSCP) subunit XPE_16535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XPE_16535 PF02874 ATP synthase alpha/beta family, beta-barrel domain XPE_16535 PF00306 ATP synthase alpha/beta chain, C terminal domain XPE_16540 PF00231 ATP synthase XPE_16545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XPE_16545 PF02874 ATP synthase alpha/beta family, beta-barrel domain XPE_16550 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XPE_16550 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XPE_16555 PF01817 Chorismate mutase type II XPE_16565 PF12804 MobA-like NTP transferase domain XPE_16565 PF14602 Hexapeptide repeat of succinyl-transferase XPE_16565 PF00132 Bacterial transferase hexapeptide (six repeats) XPE_16570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_16570 PF00512 His Kinase A (phospho-acceptor) domain XPE_16575 PF02954 Bacterial regulatory protein, Fis family XPE_16575 PF00072 Response regulator receiver domain XPE_16575 PF00158 Sigma-54 interaction domain XPE_16585 PF02687 FtsX-like permease family XPE_16585 PF12704 MacB-like periplasmic core domain XPE_16590 PF02687 FtsX-like permease family XPE_16590 PF12704 MacB-like periplasmic core domain XPE_16595 PF00005 ABC transporter XPE_16600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_16605 PF01380 SIS domain XPE_16630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XPE_16635 PF05275 Copper resistance protein B precursor (CopB) XPE_16640 PF07732 Multicopper oxidase XPE_16640 PF07731 Multicopper oxidase XPE_16640 PF00394 Multicopper oxidase XPE_16655 PF01432 Peptidase family M3 XPE_16665 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_16665 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_16670 PF07977 FabA-like domain XPE_16680 PF00817 impB/mucB/samB family XPE_16680 PF11799 impB/mucB/samB family C-terminal domain XPE_16685 PF13419 Haloacid dehalogenase-like hydrolase XPE_16695 PF13185 GAF domain XPE_16710 PF01242 6-pyruvoyl tetrahydropterin synthase XPE_16715 PF00270 DEAD/DEAH box helicase XPE_16715 PF00271 Helicase conserved C-terminal domain XPE_16730 PF14497 Glutathione S-transferase, C-terminal domain XPE_16730 PF02798 Glutathione S-transferase, N-terminal domain XPE_16735 PF00437 Type II/IV secretion system protein XPE_16755 PF00571 CBS domain XPE_16755 PF00291 Pyridoxal-phosphate dependent enzyme XPE_16760 PF01053 Cys/Met metabolism PLP-dependent enzyme XPE_16770 PF00005 ABC transporter XPE_16775 PF14307 Glycosyltransferase WbsX XPE_16775 PF05045 Rhamnan synthesis protein F XPE_16790 PF01370 NAD dependent epimerase/dehydratase family XPE_16795 PF00106 short chain dehydrogenase XPE_16800 PF04030 D-arabinono-1,4-lactone oxidase XPE_16800 PF01565 FAD binding domain XPE_16805 PF01040 UbiA prenyltransferase family XPE_16815 PF01012 Electron transfer flavoprotein domain XPE_16815 PF00766 Electron transfer flavoprotein FAD-binding domain XPE_16820 PF01012 Electron transfer flavoprotein domain XPE_16825 PF16363 GDP-mannose 4,6 dehydratase XPE_16830 PF00483 Nucleotidyl transferase XPE_16835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XPE_16840 PF04321 RmlD substrate binding domain XPE_16845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XPE_16845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XPE_16845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XPE_16850 PF01050 Mannose-6-phosphate isomerase XPE_16850 PF00483 Nucleotidyl transferase XPE_16855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XPE_16855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XPE_16855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XPE_16855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XPE_16860 PF01144 Coenzyme A transferase XPE_16865 PF01144 Coenzyme A transferase XPE_16870 PF14307 Glycosyltransferase WbsX XPE_16870 PF05045 Rhamnan synthesis protein F XPE_16900 PF03886 ABC-type transport auxiliary lipoprotein component XPE_16900 PF02470 MlaD protein XPE_16905 PF00005 ABC transporter XPE_16910 PF02405 Permease MlaE XPE_16920 PF00816 H-NS histone family XPE_16925 PF04073 Aminoacyl-tRNA editing domain XPE_16925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XPE_16925 PF03129 Anticodon binding domain XPE_16935 PF01066 CDP-alcohol phosphatidyltransferase XPE_16950 PF00544 Pectate lyase XPE_16955 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XPE_16955 PF01464 Transglycosylase SLT domain XPE_16960 PF00593 TonB dependent receptor XPE_16960 PF07715 TonB-dependent Receptor Plug Domain XPE_16965 PF08264 Anticodon-binding domain of tRNA XPE_16965 PF00133 tRNA synthetases class I (I, L, M and V) XPE_16965 PF10458 Valyl tRNA synthetase tRNA binding arm XPE_16980 PF02789 Cytosol aminopeptidase family, N-terminal domain XPE_16980 PF00883 Cytosol aminopeptidase family, catalytic domain XPE_16990 PF03739 Lipopolysaccharide export system permease LptF/LptG XPE_17005 PF02899 Phage integrase, N-terminal SAM-like domain XPE_17005 PF00589 Phage integrase family XPE_17015 PF10411 Disulfide bond isomerase protein N-terminus XPE_17015 PF13098 Thioredoxin-like domain XPE_17025 PF02769 AIR synthase related protein, C-terminal domain XPE_17025 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XPE_17025 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XPE_17030 PF05662 Coiled stalk of trimeric autotransporter adhesin XPE_17030 PF03895 YadA-like membrane anchor domain XPE_17030 PF13018 Extended Signal Peptide of Type V secretion system XPE_17030 PF05658 Head domain of trimeric autotransporter adhesin XPE_17035 PF00082 Subtilase family XPE_17035 PF04151 Bacterial pre-peptidase C-terminal domain XPE_17040 PF13018 Extended Signal Peptide of Type V secretion system XPE_17040 PF03895 YadA-like membrane anchor domain XPE_17040 PF05658 Head domain of trimeric autotransporter adhesin XPE_17040 PF05662 Coiled stalk of trimeric autotransporter adhesin XPE_17045 PF00082 Subtilase family XPE_17045 PF04151 Bacterial pre-peptidase C-terminal domain XPE_17050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XPE_17050 PF00437 Type II/IV secretion system protein XPE_17060 PF00482 Type II secretion system (T2SS), protein F XPE_17065 PF08334 Type II secretion system (T2SS), protein G XPE_17070 PF12019 Type II transport protein GspH XPE_17075 PF07963 Prokaryotic N-terminal methylation motif XPE_17085 PF03934 Type II secretion system (T2SS), protein K XPE_17090 PF05137 Fimbrial assembly protein (PilN) XPE_17095 PF10741 Type II secretion system (T2SS), protein M subtype b XPE_17105 PF00263 Bacterial type II and III secretion system protein XPE_17105 PF03958 Bacterial type II/III secretion system short domain XPE_17115 PF00392 Bacterial regulatory proteins, gntR family XPE_17115 PF07702 UTRA domain XPE_17125 PF07715 TonB-dependent Receptor Plug Domain XPE_17125 PF00593 TonB dependent receptor XPE_17160 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XPE_17160 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XPE_17175 PF07238 PilZ domain XPE_17175 PF00535 Glycosyl transferase family 2 XPE_17175 PF03552 Cellulose synthase XPE_17180 PF03170 Bacterial cellulose synthase subunit XPE_17185 PF01270 Glycosyl hydrolases family 8 XPE_17190 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) XPE_17210 PF03960 ArsC family XPE_17220 PF01327 Polypeptide deformylase XPE_17225 PF02645 Uncharacterised protein, DegV family COG1307 XPE_17250 PF01979 Amidohydrolase family XPE_17255 PF01979 Amidohydrolase family XPE_17270 PF00462 Glutaredoxin XPE_17275 PF01522 Polysaccharide deacetylase XPE_17290 PF00155 Aminotransferase class I and II XPE_17295 PF03193 RsgA GTPase XPE_17310 PF00128 Alpha amylase, catalytic domain XPE_17325 PF00356 Bacterial regulatory proteins, lacI family XPE_17330 PF00106 short chain dehydrogenase XPE_17335 PF03600 Citrate transporter XPE_17350 PF00072 Response regulator receiver domain XPE_17350 PF00486 Transcriptional regulatory protein, C terminal XPE_17355 PF00512 His Kinase A (phospho-acceptor) domain XPE_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_17355 PF08521 Two-component sensor kinase N-terminal XPE_17365 PF00196 Bacterial regulatory proteins, luxR family XPE_17365 PF00072 Response regulator receiver domain XPE_17380 PF00248 Aldo/keto reductase family XPE_17385 PF03466 LysR substrate binding domain XPE_17385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_17395 PF07690 Major Facilitator Superfamily XPE_17400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_17400 PF00512 His Kinase A (phospho-acceptor) domain XPE_17400 PF02743 Cache domain XPE_17410 PF00375 Sodium:dicarboxylate symporter family XPE_17415 PF01515 Phosphate acetyl/butaryl transferase XPE_17415 PF03949 Malic enzyme, NAD binding domain XPE_17415 PF00390 Malic enzyme, N-terminal domain XPE_17440 PF03279 Bacterial lipid A biosynthesis acyltransferase XPE_17450 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XPE_17455 PF02321 Outer membrane efflux protein XPE_17470 PF00990 Diguanylate cyclase, GGDEF domain XPE_17470 PF17151 Periplasmic sensor domain XPE_17475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_17480 PF00330 Aconitase family (aconitate hydratase) XPE_17485 PF00694 Aconitase C-terminal domain XPE_17490 PF00180 Isocitrate/isopropylmalate dehydrogenase XPE_17495 PF08502 LeuA allosteric (dimerisation) domain XPE_17495 PF00682 HMGL-like XPE_17500 PF00291 Pyridoxal-phosphate dependent enzyme XPE_17510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XPE_17510 PF00205 Thiamine pyrophosphate enzyme, central domain XPE_17510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XPE_17515 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XPE_17515 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XPE_17525 PF12729 Four helix bundle sensory module for signal transduction XPE_17525 PF00672 HAMP domain XPE_17525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_17530 PF00593 TonB dependent receptor XPE_17530 PF07715 TonB-dependent Receptor Plug Domain XPE_17540 PF13667 ThiC-associated domain XPE_17540 PF01964 Radical SAM ThiC family XPE_17545 PF18500 CadC C-terminal domain 1 XPE_17545 PF00486 Transcriptional regulatory protein, C terminal XPE_17550 PF12833 Helix-turn-helix domain XPE_17555 PF00593 TonB dependent receptor XPE_17555 PF07715 TonB-dependent Receptor Plug Domain XPE_17565 PF00719 Inorganic pyrophosphatase XPE_17575 PF03030 Inorganic H+ pyrophosphatase XPE_17585 PF00365 Phosphofructokinase XPE_17595 PF08245 Mur ligase middle domain XPE_17595 PF02875 Mur ligase family, glutamate ligase domain XPE_17595 PF01225 Mur ligase family, catalytic domain XPE_17605 PF01062 Bestrophin, RFP-TM, chloride channel XPE_17610 PF01569 PAP2 superfamily XPE_17625 PF00520 Ion transport protein XPE_17625 PF00027 Cyclic nucleotide-binding domain XPE_17630 PF00202 Aminotransferase class-III XPE_17645 PF01593 Flavin containing amine oxidoreductase XPE_17650 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XPE_17650 PF00034 Cytochrome c XPE_17660 PF00155 Aminotransferase class I and II XPE_17665 PF00127 Copper binding proteins, plastocyanin/azurin family XPE_17670 PF17874 MalT-like TPR region XPE_17670 PF00196 Bacterial regulatory proteins, luxR family XPE_17680 PF00202 Aminotransferase class-III XPE_17700 PF02581 Thiamine monophosphate synthase XPE_17705 PF00301 Rubredoxin XPE_17710 PF13369 Transglutaminase-like superfamily XPE_17720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XPE_17730 PF01812 5-formyltetrahydrofolate cyclo-ligase family XPE_17740 PF05164 Cell division protein ZapA XPE_17750 PF03695 Uncharacterised protein family (UPF0149) XPE_17755 PF05195 Aminopeptidase P, N-terminal domain XPE_17755 PF00557 Metallopeptidase family M24 XPE_17765 PF00557 Metallopeptidase family M24 XPE_17780 PF04055 Radical SAM superfamily XPE_17780 PF06969 HemN C-terminal domain XPE_17785 PF01725 Ham1 family XPE_17795 PF03725 3' exoribonuclease family, domain 2 XPE_17795 PF01138 3' exoribonuclease family, domain 1 XPE_17800 PF03755 YicC-like family, N-terminal region XPE_17800 PF08340 Domain of unknown function (DUF1732) XPE_17805 PF00625 Guanylate kinase XPE_17810 PF01192 RNA polymerase Rpb6 XPE_17815 PF13291 ACT domain XPE_17815 PF04607 Region found in RelA / SpoT proteins XPE_17815 PF02824 TGS domain XPE_17820 PF01042 Endoribonuclease L-PSP XPE_17825 PF17191 RecG wedge domain XPE_17825 PF00271 Helicase conserved C-terminal domain XPE_17825 PF00270 DEAD/DEAH box helicase XPE_17830 PF01156 Inosine-uridine preferring nucleoside hydrolase XPE_17835 PF01197 Ribosomal protein L31 XPE_17840 PF00285 Citrate synthase, C-terminal domain XPE_17850 PF00912 Transglycosylase XPE_17850 PF00905 Penicillin binding protein transpeptidase domain XPE_17850 PF17092 Penicillin-binding protein OB-like domain XPE_17875 PF03958 Bacterial type II/III secretion system short domain XPE_17875 PF00263 Bacterial type II and III secretion system protein XPE_17875 PF11741 AMIN domain XPE_17875 PF07660 Secretin and TonB N terminus short domain XPE_17880 PF07726 ATPase family associated with various cellular activities (AAA) XPE_17880 PF17863 AAA lid domain XPE_17900 PF07584 Aerotolerance regulator N-terminal XPE_17900 PF00092 von Willebrand factor type A domain XPE_17915 PF00375 Sodium:dicarboxylate symporter family XPE_17920 PF00456 Transketolase, thiamine diphosphate binding domain XPE_17920 PF02780 Transketolase, C-terminal domain XPE_17920 PF02779 Transketolase, pyrimidine binding domain XPE_17925 PF00593 TonB dependent receptor XPE_17925 PF07715 TonB-dependent Receptor Plug Domain XPE_17930 PF01551 Peptidase family M23 XPE_17930 PF04225 Opacity-associated protein A LysM-like domain XPE_17935 PF03734 L,D-transpeptidase catalytic domain XPE_17935 PF01476 LysM domain XPE_17970 PF00005 ABC transporter XPE_17970 PF03459 TOBE domain XPE_17975 PF00528 Binding-protein-dependent transport system inner membrane component XPE_17995 PF03922 OmpW family XPE_18000 PF03922 OmpW family XPE_18010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XPE_18010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XPE_18030 PF00162 Phosphoglycerate kinase XPE_18040 PF02887 Pyruvate kinase, alpha/beta domain XPE_18040 PF00224 Pyruvate kinase, barrel domain XPE_18045 PF00274 Fructose-bisphosphate aldolase class-I XPE_18050 PF01661 Macro domain XPE_18060 PF00291 Pyridoxal-phosphate dependent enzyme XPE_18065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XPE_18065 PF14824 Sirohaem biosynthesis protein central XPE_18065 PF10414 Sirohaem synthase dimerisation region XPE_18070 PF03466 LysR substrate binding domain XPE_18070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_18090 PF00072 Response regulator receiver domain XPE_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_18090 PF00512 His Kinase A (phospho-acceptor) domain XPE_18090 PF01627 Hpt domain XPE_18110 PF01507 Phosphoadenosine phosphosulfate reductase family XPE_18115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XPE_18115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XPE_18120 PF00258 Flavodoxin XPE_18120 PF00175 Oxidoreductase NAD-binding domain XPE_18120 PF00667 FAD binding domain XPE_18125 PF01507 Phosphoadenosine phosphosulfate reductase family XPE_18130 PF00009 Elongation factor Tu GTP binding domain XPE_18140 PF00529 HlyD membrane-fusion protein of T1SS XPE_18140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_18145 PF00873 AcrB/AcrD/AcrF family XPE_18150 PF11838 ERAP1-like C-terminal domain XPE_18150 PF01433 Peptidase family M1 domain XPE_18165 PF08032 RNA 2'-O ribose methyltransferase substrate binding XPE_18165 PF00588 SpoU rRNA Methylase family XPE_18180 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XPE_18180 PF14508 Glycosyl-hydrolase 97 N-terminal XPE_18180 PF10566 Glycoside hydrolase 97 XPE_18185 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XPE_18185 PF02837 Glycosyl hydrolases family 2, sugar binding domain XPE_18185 PF00703 Glycosyl hydrolases family 2 XPE_18195 PF00356 Bacterial regulatory proteins, lacI family XPE_18205 PF01741 Large-conductance mechanosensitive channel, MscL XPE_18210 PF01557 Fumarylacetoacetate (FAA) hydrolase family XPE_18230 PF02080 TrkA-C domain XPE_18230 PF03600 Citrate transporter XPE_18235 PF02390 Putative methyltransferase XPE_18240 PF05690 Thiazole biosynthesis protein ThiG XPE_18250 PF00657 GDSL-like Lipase/Acylhydrolase XPE_18250 PF03797 Autotransporter beta-domain XPE_18280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XPE_18280 PF00128 Alpha amylase, catalytic domain XPE_18285 PF18030 RimK PreATP-grasp domain XPE_18285 PF08443 RimK-like ATP-grasp domain XPE_18295 PF00072 Response regulator receiver domain XPE_18295 PF00486 Transcriptional regulatory protein, C terminal XPE_18300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_18300 PF11808 Phosphate regulon sensor protein PhoR XPE_18300 PF00989 PAS fold XPE_18300 PF00512 His Kinase A (phospho-acceptor) domain XPE_18305 PF01121 Dephospho-CoA kinase XPE_18310 PF01478 Type IV leader peptidase family XPE_18310 PF06750 Bacterial Peptidase A24 N-terminal domain XPE_18315 PF00482 Type II secretion system (T2SS), protein F XPE_18320 PF00114 Pilin (bacterial filament) XPE_18320 PF07963 Prokaryotic N-terminal methylation motif XPE_18325 PF00114 Pilin (bacterial filament) XPE_18325 PF07963 Prokaryotic N-terminal methylation motif XPE_18345 PF00534 Glycosyl transferases group 1 XPE_18350 PF00535 Glycosyl transferase family 2 XPE_18355 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XPE_18355 PF00437 Type II/IV secretion system protein XPE_18360 PF02954 Bacterial regulatory protein, Fis family XPE_18360 PF00072 Response regulator receiver domain XPE_18360 PF00158 Sigma-54 interaction domain XPE_18365 PF00512 His Kinase A (phospho-acceptor) domain XPE_18365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_18370 PF00549 CoA-ligase XPE_18370 PF08442 ATP-grasp domain XPE_18375 PF00549 CoA-ligase XPE_18375 PF02629 CoA binding domain XPE_18390 PF02540 NAD synthase XPE_18390 PF00795 Carbon-nitrogen hydrolase XPE_18400 PF13525 Outer membrane lipoprotein XPE_18405 PF00849 RNA pseudouridylate synthase XPE_18420 PF04134 Protein of unknown function, DUF393 XPE_18425 PF02203 Tar ligand binding domain homologue XPE_18425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_18425 PF00672 HAMP domain XPE_18430 PF01011 PQQ enzyme repeat XPE_18435 PF00982 Glycosyltransferase family 20 XPE_18440 PF00723 Glycosyl hydrolases family 15 XPE_18445 PF02358 Trehalose-phosphatase XPE_18450 PF00593 TonB dependent receptor XPE_18450 PF07715 TonB-dependent Receptor Plug Domain XPE_18485 PF01541 GIY-YIG catalytic domain XPE_18490 PF00005 ABC transporter XPE_18500 PF10431 C-terminal, D2-small domain, of ClpB protein XPE_18500 PF02861 Clp amino terminal domain, pathogenicity island component XPE_18500 PF00004 ATPase family associated with various cellular activities (AAA) XPE_18500 PF17871 AAA lid domain XPE_18500 PF07724 AAA domain (Cdc48 subfamily) XPE_18505 PF07715 TonB-dependent Receptor Plug Domain XPE_18505 PF00593 TonB dependent receptor XPE_18520 PF12557 Cob(I)alamin adenosyltransferase N terminal XPE_18520 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XPE_18525 PF17113 Regulatory signalling modulator protein AmpE XPE_18525 PF03186 CobD/Cbib protein XPE_18530 PF00155 Aminotransferase class I and II XPE_18535 PF07685 CobB/CobQ-like glutamine amidotransferase domain XPE_18535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XPE_18540 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XPE_18545 PF02277 Phosphoribosyltransferase XPE_18555 PF02654 Cobalamin-5-phosphate synthase XPE_18570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XPE_18570 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XPE_18580 PF07690 Major Facilitator Superfamily XPE_18585 PF04183 IucA / IucC family XPE_18585 PF06276 Ferric iron reductase FhuF-like transporter XPE_18595 PF07715 TonB-dependent Receptor Plug Domain XPE_18595 PF07660 Secretin and TonB N terminus short domain XPE_18595 PF00593 TonB dependent receptor XPE_18620 PF02254 TrkA-N domain XPE_18620 PF00999 Sodium/hydrogen exchanger family XPE_18630 PF00067 Cytochrome P450 XPE_18635 PF00593 TonB dependent receptor XPE_18635 PF07715 TonB-dependent Receptor Plug Domain XPE_18640 PF00593 TonB dependent receptor XPE_18640 PF07715 TonB-dependent Receptor Plug Domain XPE_18655 PF07715 TonB-dependent Receptor Plug Domain XPE_18655 PF00593 TonB dependent receptor XPE_18660 PF12848 ABC transporter XPE_18660 PF00005 ABC transporter XPE_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_18670 PF03466 LysR substrate binding domain XPE_18680 PF13472 GDSL-like Lipase/Acylhydrolase family XPE_18680 PF07859 alpha/beta hydrolase fold XPE_18685 PF05506 Domain of unknown function (DUF756) XPE_18685 PF04185 Phosphoesterase family XPE_18700 PF07690 Major Facilitator Superfamily XPE_18715 PF01336 OB-fold nucleic acid binding domain XPE_18715 PF02938 GAD domain XPE_18715 PF00152 tRNA synthetases class II (D, K and N) XPE_18745 PF01709 Transcriptional regulator XPE_18750 PF02075 Crossover junction endodeoxyribonuclease RuvC XPE_18755 PF07499 RuvA, C-terminal domain XPE_18755 PF01330 RuvA N terminal domain XPE_18760 PF02705 K+ potassium transporter XPE_18770 PF17864 RuvB AAA lid domain XPE_18770 PF05496 Holliday junction DNA helicase RuvB P-loop domain XPE_18770 PF05491 RuvB C-terminal winged helix domain XPE_18775 PF03061 Thioesterase superfamily XPE_18780 PF01618 MotA/TolQ/ExbB proton channel family XPE_18785 PF02472 Biopolymer transport protein ExbD/TolR XPE_18795 PF04052 TolB amino-terminal domain XPE_18795 PF07676 WD40-like Beta Propeller Repeat XPE_18800 PF00691 OmpA family XPE_18810 PF04055 Radical SAM superfamily XPE_18820 PF06508 Queuosine biosynthesis protein QueC XPE_18825 PF07536 HWE histidine kinase XPE_18825 PF13581 Histidine kinase-like ATPase domain XPE_18825 PF13426 PAS domain XPE_18845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_18845 PF00672 HAMP domain XPE_18845 PF02203 Tar ligand binding domain homologue XPE_18860 PF01479 S4 domain XPE_18860 PF00849 RNA pseudouridylate synthase XPE_18885 PF00270 DEAD/DEAH box helicase XPE_18885 PF16124 RecQ zinc-binding XPE_18885 PF00570 HRDC domain XPE_18885 PF09382 RQC domain XPE_18885 PF00271 Helicase conserved C-terminal domain XPE_18890 PF00210 Ferritin-like domain XPE_18895 PF04408 Helicase associated domain (HA2) XPE_18895 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XPE_18895 PF11898 Domain of unknown function (DUF3418) XPE_18895 PF00271 Helicase conserved C-terminal domain XPE_18895 PF00270 DEAD/DEAH box helicase XPE_18905 PF02685 Glucokinase XPE_18925 PF04055 Radical SAM superfamily XPE_18925 PF13186 Iron-sulfur cluster-binding domain XPE_18930 PF05402 Coenzyme PQQ synthesis protein D (PqqD) XPE_18935 PF03070 TENA/THI-4/PQQC family XPE_18940 PF12706 Beta-lactamase superfamily domain XPE_18945 PF08042 PqqA family XPE_18950 PF02824 TGS domain XPE_18950 PF04607 Region found in RelA / SpoT proteins XPE_18950 PF13291 ACT domain XPE_18965 PF00535 Glycosyl transferase family 2 XPE_18970 PF00912 Transglycosylase XPE_18970 PF00905 Penicillin binding protein transpeptidase domain XPE_18970 PF14814 Bifunctional transglycosylase second domain XPE_18980 PF13307 Helicase C-terminal domain XPE_18980 PF04851 Type III restriction enzyme, res subunit XPE_18985 PF00814 Glycoprotease family XPE_18990 PF03747 ADP-ribosylglycohydrolase XPE_19025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XPE_19025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XPE_19030 PF00072 Response regulator receiver domain XPE_19035 PF00072 Response regulator receiver domain XPE_19040 PF01584 CheW-like domain XPE_19045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_19045 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XPE_19050 PF00072 Response regulator receiver domain XPE_19050 PF01584 CheW-like domain XPE_19050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_19050 PF01627 Hpt domain XPE_19065 PF13302 Acetyltransferase (GNAT) domain XPE_19080 PF04542 Sigma-70 region 2 XPE_19080 PF08281 Sigma-70, region 4 XPE_19085 PF12450 von Willebrand factor XPE_19085 PF12034 Domain of unknown function (DUF3520) XPE_19085 PF00092 von Willebrand factor type A domain XPE_19090 PF01112 Asparaginase XPE_19095 PF03932 CutC family XPE_19135 PF01301 Glycosyl hydrolases family 35 XPE_19140 PF17678 Glycosyl hydrolase family 92 N-terminal domain XPE_19140 PF07971 Glycosyl hydrolase family 92 XPE_19150 PF07691 PA14 domain XPE_19150 PF01915 Glycosyl hydrolase family 3 C-terminal domain XPE_19150 PF14310 Fibronectin type III-like domain XPE_19150 PF00933 Glycosyl hydrolase family 3 N terminal domain XPE_19165 PF00704 Glycosyl hydrolases family 18 XPE_19165 PF01476 LysM domain XPE_19180 PF02685 Glucokinase XPE_19185 PF04452 RNA methyltransferase XPE_19190 PF00202 Aminotransferase class-III XPE_19195 PF00293 NUDIX domain XPE_19200 PF00459 Inositol monophosphatase family XPE_19205 PF03819 MazG nucleotide pyrophosphohydrolase domain XPE_19210 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XPE_19225 PF08669 Glycine cleavage T-protein C-terminal barrel domain XPE_19225 PF01571 Aminomethyltransferase folate-binding domain XPE_19230 PF01597 Glycine cleavage H-protein XPE_19255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_19255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_19255 PF09317 Domain of unknown function (DUF1974) XPE_19260 PF00561 alpha/beta hydrolase fold XPE_19265 PF00440 Bacterial regulatory proteins, tetR family XPE_19270 PF00593 TonB dependent receptor XPE_19270 PF07715 TonB-dependent Receptor Plug Domain XPE_19280 PF01430 Hsp33 protein XPE_19285 PF00912 Transglycosylase XPE_19290 PF00535 Glycosyl transferase family 2 XPE_19295 PF00478 IMP dehydrogenase / GMP reductase domain XPE_19295 PF00571 CBS domain XPE_19300 PF05170 AsmA family XPE_19305 PF03006 Haemolysin-III related XPE_19310 PF16658 Class II release factor RF3, C-terminal domain XPE_19310 PF00009 Elongation factor Tu GTP binding domain XPE_19315 PF01476 LysM domain XPE_19315 PF08525 Opacity-associated protein A N-terminal motif XPE_19315 PF01551 Peptidase family M23 XPE_19320 PF00561 alpha/beta hydrolase fold XPE_19325 PF01053 Cys/Met metabolism PLP-dependent enzyme XPE_19330 PF00696 Amino acid kinase family XPE_19330 PF03447 Homoserine dehydrogenase, NAD binding domain XPE_19330 PF00742 Homoserine dehydrogenase XPE_19340 PF00561 alpha/beta hydrolase fold XPE_19345 PF03313 Serine dehydratase alpha chain XPE_19345 PF03315 Serine dehydratase beta chain XPE_19365 PF04264 YceI-like domain XPE_19370 PF01627 Hpt domain XPE_19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_19370 PF00512 His Kinase A (phospho-acceptor) domain XPE_19370 PF00072 Response regulator receiver domain XPE_19375 PF00072 Response regulator receiver domain XPE_19375 PF01627 Hpt domain XPE_19375 PF00512 His Kinase A (phospho-acceptor) domain XPE_19375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_19375 PF17149 Periplasmic sensor domain found in signal transduction proteins XPE_19375 PF00672 HAMP domain XPE_19380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_19380 PF00672 HAMP domain XPE_19380 PF00072 Response regulator receiver domain XPE_19380 PF01627 Hpt domain XPE_19380 PF00512 His Kinase A (phospho-acceptor) domain XPE_19380 PF17149 Periplasmic sensor domain found in signal transduction proteins XPE_19385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_19385 PF17149 Periplasmic sensor domain found in signal transduction proteins XPE_19385 PF00672 HAMP domain XPE_19385 PF00072 Response regulator receiver domain XPE_19385 PF00512 His Kinase A (phospho-acceptor) domain XPE_19385 PF01627 Hpt domain XPE_19390 PF07690 Major Facilitator Superfamily XPE_19395 PF01208 Uroporphyrinogen decarboxylase (URO-D) XPE_19405 PF01761 3-dehydroquinate synthase XPE_19410 PF01202 Shikimate kinase XPE_19415 PF01243 Pyridoxamine 5'-phosphate oxidase XPE_19415 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XPE_19425 PF04012 PspA/IM30 family XPE_19450 PF03738 Glutathionylspermidine synthase preATP-grasp XPE_19455 PF07690 Major Facilitator Superfamily XPE_19460 PF09278 MerR, DNA binding XPE_19460 PF00376 MerR family regulatory protein XPE_19510 PF12706 Beta-lactamase superfamily domain XPE_19550 PF00324 Amino acid permease XPE_19555 PF00196 Bacterial regulatory proteins, luxR family XPE_19565 PF00561 alpha/beta hydrolase fold XPE_19575 PF00544 Pectate lyase XPE_19580 PF00324 Amino acid permease XPE_19590 PF01654 Cytochrome bd terminal oxidase subunit I XPE_19595 PF02322 Cytochrome bd terminal oxidase subunit II XPE_19600 PF00756 Putative esterase XPE_19605 PF01769 Divalent cation transporter XPE_19605 PF00571 CBS domain XPE_19605 PF03448 MgtE intracellular N domain XPE_19615 PF02896 PEP-utilising enzyme, TIM barrel domain XPE_19615 PF00391 PEP-utilising enzyme, mobile domain XPE_19615 PF05524 PEP-utilising enzyme, N-terminal XPE_19620 PF00381 PTS HPr component phosphorylation site XPE_19630 PF03668 P-loop ATPase protein family XPE_19635 PF07475 HPr Serine kinase C-terminal domain XPE_19635 PF02603 HPr Serine kinase N terminus XPE_19640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XPE_19645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XPE_19650 PF00309 Sigma-54 factor, Activator interacting domain (AID) XPE_19650 PF04963 Sigma-54 factor, core binding domain XPE_19650 PF04552 Sigma-54, DNA binding domain XPE_19655 PF00005 ABC transporter XPE_19660 PF03968 OstA-like protein XPE_19675 PF00571 CBS domain XPE_19675 PF01380 SIS domain XPE_19680 PF01722 BolA-like protein XPE_19685 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XPE_19705 PF00551 Formyl transferase XPE_19715 PF02769 AIR synthase related protein, C-terminal domain XPE_19715 PF00586 AIR synthase related protein, N-terminal domain XPE_19725 PF01594 AI-2E family transporter XPE_19730 PF00308 Bacterial dnaA protein XPE_19735 PF00483 Nucleotidyl transferase XPE_19740 PF01636 Phosphotransferase enzyme family XPE_19770 PF00667 FAD binding domain XPE_19770 PF00258 Flavodoxin XPE_19770 PF00175 Oxidoreductase NAD-binding domain XPE_19775 PF02424 ApbE family XPE_19800 PF13640 2OG-Fe(II) oxygenase superfamily XPE_19800 PF18331 PKHD-type hydroxylase C-terminal domain XPE_19805 PF00593 TonB dependent receptor XPE_19805 PF07715 TonB-dependent Receptor Plug Domain XPE_19810 PF00355 Rieske [2Fe-2S] domain XPE_19815 PF00583 Acetyltransferase (GNAT) family XPE_19820 PF00266 Aminotransferase class-V XPE_19825 PF01458 Uncharacterized protein family (UPF0051) XPE_19830 PF00005 ABC transporter XPE_19835 PF01458 Uncharacterized protein family (UPF0051) XPE_19840 PF02082 Transcriptional regulator XPE_19850 PF01965 DJ-1/PfpI family XPE_19870 PF01551 Peptidase family M23 XPE_19880 PF03807 NADP oxidoreductase coenzyme F420-dependent XPE_19880 PF14748 Pyrroline-5-carboxylate reductase dimerisation XPE_19885 PF01168 Alanine racemase, N-terminal domain XPE_19890 PF00437 Type II/IV secretion system protein XPE_19895 PF00437 Type II/IV secretion system protein XPE_19915 PF03352 Methyladenine glycosylase XPE_19915 PF13673 Acetyltransferase (GNAT) domain XPE_19915 PF00958 GMP synthase C terminal domain XPE_19915 PF13302 Acetyltransferase (GNAT) domain XPE_19915 PF00117 Glutamine amidotransferase class-I XPE_19925 PF02622 Uncharacterized ACR, COG1678 XPE_19930 PF03652 Holliday junction resolvase XPE_19935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XPE_19935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XPE_19940 PF02566 OsmC-like protein XPE_19950 PF02567 Phenazine biosynthesis-like protein XPE_19955 PF02567 Phenazine biosynthesis-like protein XPE_19960 PF00696 Amino acid kinase family XPE_19960 PF01842 ACT domain XPE_19975 PF02875 Mur ligase family, glutamate ligase domain XPE_19975 PF08245 Mur ligase middle domain XPE_19990 PF00348 Polyprenyl synthetase XPE_19995 PF00436 Single-strand binding protein family XPE_20000 PF00360 Phytochrome region XPE_20000 PF00990 Diguanylate cyclase, GGDEF domain XPE_20000 PF01590 GAF domain XPE_20000 PF00563 EAL domain XPE_20005 PF00107 Zinc-binding dehydrogenase XPE_20005 PF00698 Acyl transferase domain XPE_20005 PF08240 Alcohol dehydrogenase GroES-like domain XPE_20005 PF16197 Ketoacyl-synthetase C-terminal extension XPE_20005 PF00109 Beta-ketoacyl synthase, N-terminal domain XPE_20005 PF02801 Beta-ketoacyl synthase, C-terminal domain XPE_20005 PF08659 KR domain XPE_20005 PF00550 Phosphopantetheine attachment site XPE_20005 PF14765 Polyketide synthase dehydratase XPE_20010 PF00111 2Fe-2S iron-sulfur cluster binding domain XPE_20010 PF01799 [2Fe-2S] binding domain XPE_20010 PF10518 TAT (twin-arginine translocation) pathway signal sequence XPE_20015 PF03450 CO dehydrogenase flavoprotein C-terminal domain XPE_20015 PF00941 FAD binding domain in molybdopterin dehydrogenase XPE_20020 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XPE_20020 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XPE_20025 PF13478 XdhC Rossmann domain XPE_20025 PF02625 XdhC and CoxI family XPE_20065 PF04328 Selenoprotein, putative XPE_20070 PF02554 Carbon starvation protein CstA XPE_20070 PF13722 5TM C-terminal transporter carbon starvation CstA XPE_20075 PF05726 Pirin C-terminal cupin domain XPE_20075 PF02678 Pirin XPE_20090 PF02678 Pirin XPE_20090 PF05726 Pirin C-terminal cupin domain XPE_20105 PF04493 Endonuclease V XPE_20110 PF00300 Histidine phosphatase superfamily (branch 1) XPE_20120 PF01431 Peptidase family M13 XPE_20120 PF05649 Peptidase family M13 XPE_20125 PF13091 PLD-like domain XPE_20130 PF01339 CheB methylesterase XPE_20130 PF00072 Response regulator receiver domain XPE_20135 PF03705 CheR methyltransferase, all-alpha domain XPE_20135 PF01739 CheR methyltransferase, SAM binding domain XPE_20140 PF00563 EAL domain XPE_20140 PF00990 Diguanylate cyclase, GGDEF domain XPE_20140 PF13426 PAS domain XPE_20145 PF01584 CheW-like domain XPE_20150 PF02203 Tar ligand binding domain homologue XPE_20150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XPE_20150 PF00672 HAMP domain XPE_20160 PF01627 Hpt domain XPE_20160 PF01584 CheW-like domain XPE_20160 PF02895 Signal transducing histidine kinase, homodimeric domain XPE_20160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_20160 PF09078 CheY binding XPE_20170 PF17757 UvrB interaction domain XPE_20170 PF02559 CarD-like/TRCF domain XPE_20170 PF00270 DEAD/DEAH box helicase XPE_20170 PF03461 TRCF domain XPE_20170 PF00271 Helicase conserved C-terminal domain XPE_20180 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XPE_20185 PF00072 Response regulator receiver domain XPE_20185 PF00486 Transcriptional regulatory protein, C terminal XPE_20190 PF00512 His Kinase A (phospho-acceptor) domain XPE_20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_20190 PF00672 HAMP domain XPE_20200 PF06123 Inner membrane protein CreD XPE_20225 PF00749 tRNA synthetases class I (E and Q), catalytic domain XPE_20230 PF01475 Ferric uptake regulator family XPE_20240 PF00529 HlyD membrane-fusion protein of T1SS XPE_20240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XPE_20245 PF00873 AcrB/AcrD/AcrF family XPE_20250 PF02321 Outer membrane efflux protein XPE_20255 PF00440 Bacterial regulatory proteins, tetR family XPE_20255 PF16859 Tetracyclin repressor-like, C-terminal domain XPE_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_20260 PF03466 LysR substrate binding domain XPE_20270 PF12833 Helix-turn-helix domain XPE_20270 PF06719 AraC-type transcriptional regulator N-terminus XPE_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_20280 PF03466 LysR substrate binding domain XPE_20285 PF07690 Major Facilitator Superfamily XPE_20290 PF00248 Aldo/keto reductase family XPE_20300 PF01483 Proprotein convertase P-domain XPE_20300 PF00082 Subtilase family XPE_20310 PF00082 Subtilase family XPE_20310 PF01483 Proprotein convertase P-domain XPE_20320 PF07715 TonB-dependent Receptor Plug Domain XPE_20320 PF00593 TonB dependent receptor XPE_20340 PF00654 Voltage gated chloride channel XPE_20350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XPE_20350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XPE_20395 PF04545 Sigma-70, region 4 XPE_20395 PF04539 Sigma-70 region 3 XPE_20395 PF04542 Sigma-70 region 2 XPE_20400 PF03880 DbpA RNA binding domain XPE_20400 PF00270 DEAD/DEAH box helicase XPE_20400 PF00271 Helicase conserved C-terminal domain XPE_20405 PF00990 Diguanylate cyclase, GGDEF domain XPE_20405 PF08448 PAS fold XPE_20405 PF00563 EAL domain XPE_20410 PF00849 RNA pseudouridylate synthase XPE_20410 PF01479 S4 domain XPE_20415 PF00990 Diguanylate cyclase, GGDEF domain XPE_20415 PF08448 PAS fold XPE_20435 PF03737 Aldolase/RraA XPE_20440 PF00144 Beta-lactamase XPE_20445 PF00999 Sodium/hydrogen exchanger family XPE_20450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_20450 PF00672 HAMP domain XPE_20450 PF00512 His Kinase A (phospho-acceptor) domain XPE_20455 PF00072 Response regulator receiver domain XPE_20455 PF00486 Transcriptional regulatory protein, C terminal XPE_20460 PF02321 Outer membrane efflux protein XPE_20475 PF00873 AcrB/AcrD/AcrF family XPE_20490 PF00005 ABC transporter XPE_20490 PF00664 ABC transporter transmembrane region XPE_20520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_20520 PF03466 LysR substrate binding domain XPE_20530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XPE_20535 PF04070 Domain of unknown function (DUF378) XPE_20565 PF00085 Thioredoxin XPE_20575 PF13603 Leucyl-tRNA synthetase, Domain 2 XPE_20575 PF00133 tRNA synthetases class I (I, L, M and V) XPE_20575 PF08264 Anticodon-binding domain of tRNA XPE_20590 PF01467 Cytidylyltransferase-like XPE_20605 PF02590 Predicted SPOUT methyltransferase XPE_20615 PF04402 Protein of unknown function (DUF541) XPE_20620 PF02545 Maf-like protein XPE_20625 PF00575 S1 RNA binding domain XPE_20625 PF10150 Ribonuclease E/G family XPE_20630 PF13116 Protein of unknown function XPE_20630 PF13502 AsmA-like C-terminal region XPE_20640 PF01523 Putative modulator of DNA gyrase XPE_20645 PF04751 Protein of unknown function (DUF615) XPE_20650 PF01523 Putative modulator of DNA gyrase XPE_20660 PF14521 Lysine-specific metallo-endopeptidase XPE_20665 PF00348 Polyprenyl synthetase XPE_20670 PF02609 Exonuclease VII small subunit XPE_20675 PF01171 PP-loop family XPE_20675 PF11734 TilS substrate C-terminal domain XPE_20675 PF09179 TilS substrate binding domain XPE_20685 PF00245 Alkaline phosphatase XPE_20690 PF00375 Sodium:dicarboxylate symporter family XPE_20695 PF13649 Methyltransferase domain XPE_20705 PF00877 NlpC/P60 family XPE_20710 PF00877 NlpC/P60 family XPE_20715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XPE_20720 PF04235 Protein of unknown function (DUF418) XPE_20725 PF01266 FAD dependent oxidoreductase XPE_20730 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_20730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XPE_20750 PF01431 Peptidase family M13 XPE_20750 PF05649 Peptidase family M13 XPE_20760 PF01431 Peptidase family M13 XPE_20760 PF05649 Peptidase family M13 XPE_20780 PF00593 TonB dependent receptor XPE_20780 PF07715 TonB-dependent Receptor Plug Domain XPE_20785 PF10609 NUBPL iron-transfer P-loop NTPase XPE_20795 PF00692 dUTPase XPE_20815 PF01738 Dienelactone hydrolase family XPE_20820 PF00919 Uncharacterized protein family UPF0004 XPE_20820 PF18693 TRAM domain XPE_20820 PF04055 Radical SAM superfamily XPE_20825 PF01272 Transcription elongation factor, GreA/GreB, C-term XPE_20825 PF03449 Transcription elongation factor, N-terminal XPE_20845 PF00293 NUDIX domain XPE_20850 PF05872 Bacterial protein of unknown function (DUF853) XPE_20860 PF02666 Phosphatidylserine decarboxylase XPE_20865 PF02630 SCO1/SenC XPE_20870 PF05175 Methyltransferase small domain XPE_20875 PF01264 Chorismate synthase XPE_20880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XPE_20880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XPE_20885 PF01118 Semialdehyde dehydrogenase, NAD binding domain XPE_20885 PF02774 Semialdehyde dehydrogenase, dimerisation domain XPE_20900 PF01416 tRNA pseudouridine synthase XPE_20905 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XPE_20910 PF03466 LysR substrate binding domain XPE_20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XPE_20915 PF00291 Pyridoxal-phosphate dependent enzyme XPE_20925 PF00290 Tryptophan synthase alpha chain XPE_20930 PF01039 Carboxyl transferase domain XPE_20930 PF17848 Acetyl-coA carboxylase zinc finger domain XPE_20935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XPE_20935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XPE_20935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XPE_20935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XPE_20950 PF03707 Bacterial signalling protein N terminal repeat XPE_20950 PF00990 Diguanylate cyclase, GGDEF domain XPE_20950 PF00563 EAL domain XPE_20965 PF00106 short chain dehydrogenase XPE_20970 PF00121 Triosephosphate isomerase XPE_20985 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XPE_20990 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XPE_20995 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XPE_21000 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XPE_21010 PF10531 SLBB domain XPE_21010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XPE_21010 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XPE_21015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XPE_21015 PF00384 Molybdopterin oxidoreductase XPE_21015 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XPE_21020 PF00146 NADH dehydrogenase XPE_21025 PF12838 4Fe-4S dicluster domain XPE_21030 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XPE_21035 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XPE_21040 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XPE_21040 PF00361 Proton-conducting membrane transporter XPE_21045 PF00361 Proton-conducting membrane transporter XPE_21045 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XPE_21050 PF00361 Proton-conducting membrane transporter XPE_21060 PF02576 RimP N-terminal domain XPE_21060 PF17384 RimP C-terminal SH3 domain XPE_21065 PF08529 NusA N-terminal domain XPE_21065 PF00575 S1 RNA binding domain XPE_21065 PF13184 NusA-like KH domain XPE_21070 PF11987 Translation-initiation factor 2 XPE_21070 PF00009 Elongation factor Tu GTP binding domain XPE_21070 PF08364 Bacterial translation initiation factor IF-2 associated region XPE_21070 PF04760 Translation initiation factor IF-2, N-terminal region XPE_21075 PF02033 Ribosome-binding factor A XPE_21080 PF01509 TruB family pseudouridylate synthase (N terminal domain) XPE_21080 PF09157 Pseudouridine synthase II TruB, C-terminal XPE_21080 PF16198 tRNA pseudouridylate synthase B C-terminal domain XPE_21085 PF00312 Ribosomal protein S15 XPE_21090 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XPE_21090 PF03725 3' exoribonuclease family, domain 2 XPE_21090 PF01138 3' exoribonuclease family, domain 1 XPE_21090 PF00013 KH domain XPE_21090 PF00575 S1 RNA binding domain XPE_21100 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XPE_21100 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XPE_21110 PF00731 AIR carboxylase XPE_21115 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XPE_21115 PF02222 ATP-grasp domain XPE_21120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XPE_21120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XPE_21125 PF00462 Glutaredoxin XPE_21135 PF01914 MarC family integral membrane protein XPE_21140 PF00593 TonB dependent receptor XPE_21145 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XPE_21145 PF11892 Domain of unknown function (DUF3412) XPE_21145 PF03641 Possible lysine decarboxylase XPE_21150 PF06580 Histidine kinase XPE_21150 PF07694 5TMR of 5TMR-LYT XPE_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_21175 PF05567 Neisseria PilC beta-propeller domain XPE_21180 PF00114 Pilin (bacterial filament) XPE_21180 PF07963 Prokaryotic N-terminal methylation motif XPE_21195 PF17757 UvrB interaction domain XPE_21195 PF12344 Ultra-violet resistance protein B XPE_21195 PF02151 UvrB/uvrC motif XPE_21195 PF04851 Type III restriction enzyme, res subunit XPE_21195 PF00271 Helicase conserved C-terminal domain XPE_21215 PF02534 Type IV secretory system Conjugative DNA transfer XPE_21235 PF03743 Bacterial conjugation TrbI-like protein XPE_21240 PF00437 Type II/IV secretion system protein XPE_21245 PF01464 Transglycosylase SLT domain XPE_21255 PF05101 Type IV secretory pathway, VirB3-like protein XPE_21260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XPE_21315 PF01527 Transposase XPE_21320 PF00128 Alpha amylase, catalytic domain XPE_21335 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XPE_21335 PF14508 Glycosyl-hydrolase 97 N-terminal XPE_21335 PF10566 Glycoside hydrolase 97 XPE_21345 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XPE_21350 PF00128 Alpha amylase, catalytic domain XPE_21350 PF00686 Starch binding domain XPE_21355 PF00356 Bacterial regulatory proteins, lacI family XPE_21360 PF02824 TGS domain XPE_21360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XPE_21360 PF03129 Anticodon binding domain XPE_21360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XPE_21365 PF05198 Translation initiation factor IF-3, N-terminal domain XPE_21365 PF00707 Translation initiation factor IF-3, C-terminal domain XPE_21370 PF01632 Ribosomal protein L35 XPE_21375 PF00453 Ribosomal protein L20 XPE_21380 PF01409 tRNA synthetases class II core domain (F) XPE_21380 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XPE_21385 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XPE_21385 PF03147 Ferredoxin-fold anticodon binding domain XPE_21385 PF03483 B3/4 domain XPE_21385 PF01588 Putative tRNA binding domain XPE_21385 PF03484 tRNA synthetase B5 domain XPE_21390 PF00216 Bacterial DNA-binding protein XPE_21395 PF13411 MerR HTH family regulatory protein XPE_21415 PF02397 Bacterial sugar transferase XPE_21435 PF13439 Glycosyltransferase Family 4 XPE_21435 PF00534 Glycosyl transferases group 1 XPE_21445 PF14667 Polysaccharide biosynthesis C-terminal domain XPE_21460 PF03808 Glycosyl transferase WecB/TagA/CpsF family XPE_21475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XPE_21475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XPE_21480 PF00753 Metallo-beta-lactamase superfamily XPE_21480 PF16123 Hydroxyacylglutathione hydrolase C-terminus XPE_21485 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XPE_21505 PF02779 Transketolase, pyrimidine binding domain XPE_21505 PF02780 Transketolase, C-terminal domain XPE_21505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XPE_21515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XPE_21515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XPE_21515 PF12806 Acetyl-CoA dehydrogenase C-terminal like XPE_21515 PF02770 Acyl-CoA dehydrogenase, middle domain XPE_21525 PF08212 Lipocalin-like domain XPE_21555 PF00072 Response regulator receiver domain XPE_21555 PF13426 PAS domain XPE_21555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_21565 PF04362 Bacterial Fe(2+) trafficking XPE_21570 PF10576 Iron-sulfur binding domain of endonuclease III XPE_21570 PF00633 Helix-hairpin-helix motif XPE_21570 PF00730 HhH-GPD superfamily base excision DNA repair protein XPE_21570 PF14815 NUDIX domain XPE_21580 PF02881 SRP54-type protein, helical bundle domain XPE_21580 PF00448 SRP54-type protein, GTPase domain XPE_21590 PF05544 Proline racemase XPE_21595 PF01266 FAD dependent oxidoreductase XPE_21605 PF04324 BFD-like [2Fe-2S] binding domain XPE_21605 PF07992 Pyridine nucleotide-disulphide oxidoreductase XPE_21610 PF00701 Dihydrodipicolinate synthetase family XPE_21615 PF00171 Aldehyde dehydrogenase family XPE_21620 PF01321 Creatinase/Prolidase N-terminal domain XPE_21620 PF00557 Metallopeptidase family M24 XPE_21635 PF13520 Amino acid permease XPE_21655 PF09286 Pro-kumamolisin, activation domain XPE_21655 PF00082 Subtilase family XPE_21670 PF07715 TonB-dependent Receptor Plug Domain XPE_21670 PF00593 TonB dependent receptor XPE_21675 PF07532 Bacterial Ig-like domain (group 4) XPE_21680 PF04616 Glycosyl hydrolases family 43 XPE_21690 PF07715 TonB-dependent Receptor Plug Domain XPE_21690 PF00593 TonB dependent receptor XPE_21705 PF00183 Hsp90 protein XPE_21705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XPE_21715 PF01467 Cytidylyltransferase-like XPE_21730 PF00037 4Fe-4S binding domain XPE_21740 PF00759 Glycosyl hydrolase family 9 XPE_21740 PF02927 Cellulase N-terminal ig-like domain