locus-tag class description PJW04_00005 PF00308 Bacterial dnaA protein PJW04_00005 PF08299 Bacterial dnaA protein helix-turn-helix PJW04_00005 PF11638 DnaA N-terminal domain PJW04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain PJW04_00010 PF02767 DNA polymerase III beta subunit, central domain PJW04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain PJW04_00015 PF02463 RecF/RecN/SMC N terminal domain PJW04_00020 PF00204 DNA gyrase B PJW04_00020 PF00986 DNA gyrase B subunit, carboxyl terminus PJW04_00020 PF18053 DNA gyrase B subunit insert domain PJW04_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_00020 PF01751 Toprim domain PJW04_00030 PF01435 Peptidase family M48 PJW04_00040 PF03544 Gram-negative bacterial TonB protein C-terminal PJW04_00045 PF01618 MotA/TolQ/ExbB proton channel family PJW04_00050 PF02472 Biopolymer transport protein ExbD/TolR PJW04_00055 PF02472 Biopolymer transport protein ExbD/TolR PJW04_00060 PF02472 Biopolymer transport protein ExbD/TolR PJW04_00065 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ PJW04_00075 PF13091 PLD-like domain PJW04_00075 PF13396 Phospholipase_D-nuclease N-terminal PJW04_00090 PF04055 Radical SAM superfamily PJW04_00100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) PJW04_00120 PF03572 Peptidase family S41 PJW04_00120 PF13180 PDZ domain PJW04_00125 PF01551 Peptidase family M23 PJW04_00135 PF04389 Peptidase family M28 PJW04_00145 PF00150 Cellulase (glycosyl hydrolase family 5) PJW04_00150 PF00150 Cellulase (glycosyl hydrolase family 5) PJW04_00155 PF00150 Cellulase (glycosyl hydrolase family 5) PJW04_00160 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_00160 PF00107 Zinc-binding dehydrogenase PJW04_00170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PJW04_00170 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_00175 PF00310 Glutamine amidotransferases class-II PJW04_00175 PF04898 Glutamate synthase central domain PJW04_00175 PF01645 Conserved region in glutamate synthase PJW04_00175 PF01493 GXGXG motif PJW04_00195 PF01804 Penicillin amidase PJW04_00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_00205 PF03466 LysR substrate binding domain PJW04_00260 PF09369 Domain of unknown function (DUF1998) PJW04_00260 PF00270 DEAD/DEAH box helicase PJW04_00260 PF00271 Helicase conserved C-terminal domain PJW04_00265 PF03006 Haemolysin-III related PJW04_00285 PF00106 short chain dehydrogenase PJW04_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_00295 PF03466 LysR substrate binding domain PJW04_00305 PF02525 Flavodoxin-like fold PJW04_00340 PF05532 CsbD-like PJW04_00360 PF16485 Protealysin propeptide PJW04_00360 PF02868 Thermolysin metallopeptidase, alpha-helical domain PJW04_00360 PF01447 Thermolysin metallopeptidase, catalytic domain PJW04_00370 PF13344 Haloacid dehalogenase-like hydrolase PJW04_00370 PF00293 NUDIX domain PJW04_00385 PF00085 Thioredoxin PJW04_00390 PF00083 Sugar (and other) transporter PJW04_00390 PF08946 Osmosensory transporter coiled coil PJW04_00430 PF07726 ATPase family associated with various cellular activities (AAA) PJW04_00430 PF17863 AAA lid domain PJW04_00475 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain PJW04_00480 PF00155 Aminotransferase class I and II PJW04_00485 PF00593 TonB dependent receptor PJW04_00485 PF07715 TonB-dependent Receptor Plug Domain PJW04_00500 PF00171 Aldehyde dehydrogenase family PJW04_00520 PF02735 Ku70/Ku80 beta-barrel domain PJW04_00525 PF01070 FMN-dependent dehydrogenase PJW04_00540 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PJW04_00545 PF07730 Histidine kinase PJW04_00550 PF00072 Response regulator receiver domain PJW04_00550 PF00196 Bacterial regulatory proteins, luxR family PJW04_00570 PF00486 Transcriptional regulatory protein, C terminal PJW04_00570 PF18500 CadC C-terminal domain 1 PJW04_00575 PF12241 Trans-2-enoyl-CoA reductase catalytic region PJW04_00575 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase PJW04_00575 PF07055 Enoyl reductase FAD binding domain PJW04_00585 PF00294 pfkB family carbohydrate kinase PJW04_00660 PF11896 Domain of unknown function (DUF3416) PJW04_00660 PF00128 Alpha amylase, catalytic domain PJW04_00665 PF00128 Alpha amylase, catalytic domain PJW04_00665 PF16657 Maltogenic Amylase, C-terminal domain PJW04_00670 PF00128 Alpha amylase, catalytic domain PJW04_00670 PF02806 Alpha amylase, C-terminal all-beta domain PJW04_00670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PJW04_00680 PF00248 Aldo/keto reductase family PJW04_00685 PF00135 Carboxylesterase family PJW04_00690 PF07859 alpha/beta hydrolase fold PJW04_00690 PF13472 GDSL-like Lipase/Acylhydrolase family PJW04_00700 PF03480 Bacterial extracellular solute-binding protein, family 7 PJW04_00710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PJW04_00715 PF04616 Glycosyl hydrolases family 43 PJW04_00715 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PJW04_00720 PF00356 Bacterial regulatory proteins, lacI family PJW04_00725 PF04962 KduI/IolB family PJW04_00740 PF00657 GDSL-like Lipase/Acylhydrolase PJW04_00750 PF00351 Biopterin-dependent aromatic amino acid hydroxylase PJW04_00755 PF01037 Lrp/AsnC ligand binding domain PJW04_00760 PF07715 TonB-dependent Receptor Plug Domain PJW04_00760 PF07660 Secretin and TonB N terminus short domain PJW04_00760 PF00593 TonB dependent receptor PJW04_00765 PF01734 Patatin-like phospholipase PJW04_00770 PF07687 Peptidase dimerisation domain PJW04_00770 PF01546 Peptidase family M20/M25/M40 PJW04_00780 PF00005 ABC transporter PJW04_00795 PF00005 ABC transporter PJW04_00800 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_00810 PF03781 Sulfatase-modifying factor enzyme 1 PJW04_00810 PF12867 DinB superfamily PJW04_00840 PF10609 NUBPL iron-transfer P-loop NTPase PJW04_00840 PF01883 Iron-sulfur cluster assembly protein PJW04_00855 PF13091 PLD-like domain PJW04_00860 PF03061 Thioesterase superfamily PJW04_00890 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_00890 PF00107 Zinc-binding dehydrogenase PJW04_00900 PF02673 Bacitracin resistance protein BacA PJW04_00905 PF03951 Glutamine synthetase, beta-Grasp domain PJW04_00905 PF00120 Glutamine synthetase, catalytic domain PJW04_00910 PF00543 Nitrogen regulatory protein P-II PJW04_00915 PF00909 Ammonium Transporter Family PJW04_00920 PF00989 PAS fold PJW04_00920 PF00512 His Kinase A (phospho-acceptor) domain PJW04_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_00925 PF00072 Response regulator receiver domain PJW04_00925 PF00158 Sigma-54 interaction domain PJW04_00925 PF02954 Bacterial regulatory protein, Fis family PJW04_00930 PF00080 Copper/zinc superoxide dismutase (SODC) PJW04_00935 PF00080 Copper/zinc superoxide dismutase (SODC) PJW04_00940 PF03544 Gram-negative bacterial TonB protein C-terminal PJW04_00950 PF00108 Thiolase, N-terminal domain PJW04_00950 PF02803 Thiolase, C-terminal domain PJW04_00985 PF00581 Rhodanese-like domain PJW04_00990 PF02556 Preprotein translocase subunit SecB PJW04_00995 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PJW04_00995 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PJW04_01010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PJW04_01010 PF00205 Thiamine pyrophosphate enzyme, central domain PJW04_01010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PJW04_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_01015 PF00512 His Kinase A (phospho-acceptor) domain PJW04_01020 PF00158 Sigma-54 interaction domain PJW04_01020 PF02954 Bacterial regulatory protein, Fis family PJW04_01020 PF00072 Response regulator receiver domain PJW04_01035 PF07690 Major Facilitator Superfamily PJW04_01040 PF00588 SpoU rRNA Methylase family PJW04_01055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJW04_01055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJW04_01060 PF02661 Fic/DOC family PJW04_01060 PF13784 Fic/DOC family N-terminal PJW04_01065 PF00561 alpha/beta hydrolase fold PJW04_01070 PF03692 Putative zinc- or iron-chelating domain PJW04_01075 PF00501 AMP-binding enzyme PJW04_01080 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family PJW04_01100 PF03109 ABC1 family PJW04_01110 PF00849 RNA pseudouridylate synthase PJW04_01120 PF00472 RF-1 domain PJW04_01130 PF01112 Asparaginase PJW04_01135 PF01432 Peptidase family M3 PJW04_01140 PF12706 Beta-lactamase superfamily domain PJW04_01165 PF00999 Sodium/hydrogen exchanger family PJW04_01170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_01170 PF03466 LysR substrate binding domain PJW04_01175 PF01274 Malate synthase PJW04_01180 PF00463 Isocitrate lyase family PJW04_01185 PF00990 Diguanylate cyclase, GGDEF domain PJW04_01205 PF00326 Prolyl oligopeptidase family PJW04_01210 PF00289 Biotin carboxylase, N-terminal domain PJW04_01210 PF00364 Biotin-requiring enzyme PJW04_01210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJW04_01210 PF18140 Propionyl-coenzyme A carboxylase BT domain PJW04_01210 PF02785 Biotin carboxylase C-terminal domain PJW04_01215 PF01039 Carboxyl transferase domain PJW04_01220 PF02770 Acyl-CoA dehydrogenase, middle domain PJW04_01220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJW04_01220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJW04_01280 PF02492 CobW/HypB/UreG, nucleotide-binding domain PJW04_01280 PF07683 Cobalamin synthesis protein cobW C-terminal domain PJW04_01300 PF03969 AFG1-like ATPase PJW04_01305 PF01047 MarR family PJW04_01310 PF02566 OsmC-like protein PJW04_01330 PF16884 N-terminal domain of oxidoreductase PJW04_01330 PF00107 Zinc-binding dehydrogenase PJW04_01335 PF00248 Aldo/keto reductase family PJW04_01345 PF00849 RNA pseudouridylate synthase PJW04_01355 PF00271 Helicase conserved C-terminal domain PJW04_01355 PF08482 ATP-dependent helicase C-terminal PJW04_01355 PF00270 DEAD/DEAH box helicase PJW04_01355 PF04408 Helicase associated domain (HA2) PJW04_01365 PF07308 Protein of unknown function (DUF1456) PJW04_01370 PF00576 HIUase/Transthyretin family PJW04_01375 PF13454 FAD-NAD(P)-binding PJW04_01380 PF09349 OHCU decarboxylase PJW04_01380 PF01014 Uricase PJW04_01395 PF00266 Aminotransferase class-V PJW04_01400 PF01546 Peptidase family M20/M25/M40 PJW04_01400 PF07687 Peptidase dimerisation domain PJW04_01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_01405 PF03466 LysR substrate binding domain PJW04_01410 PF00561 alpha/beta hydrolase fold PJW04_01430 PF01425 Amidase PJW04_01435 PF01156 Inosine-uridine preferring nucleoside hydrolase PJW04_01445 PF00860 Permease family PJW04_01450 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_01455 PF00355 Rieske [2Fe-2S] domain PJW04_01460 PF03466 LysR substrate binding domain PJW04_01460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_01465 PF01026 TatD related DNase PJW04_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_01480 PF03466 LysR substrate binding domain PJW04_01485 PF07690 Major Facilitator Superfamily PJW04_01495 PF00561 alpha/beta hydrolase fold PJW04_01495 PF08386 TAP-like protein PJW04_01500 PF02146 Sir2 family PJW04_01505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PJW04_01510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PJW04_01510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PJW04_01520 PF00551 Formyl transferase PJW04_01525 PF00072 Response regulator receiver domain PJW04_01525 PF00486 Transcriptional regulatory protein, C terminal PJW04_01530 PF00672 HAMP domain PJW04_01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_01530 PF00512 His Kinase A (phospho-acceptor) domain PJW04_01535 PF00529 HlyD membrane-fusion protein of T1SS PJW04_01535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_01540 PF00873 AcrB/AcrD/AcrF family PJW04_01545 PF02321 Outer membrane efflux protein PJW04_01560 PF02677 Epoxyqueuosine reductase QueH PJW04_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_01565 PF03466 LysR substrate binding domain PJW04_01570 PF03358 NADPH-dependent FMN reductase PJW04_01580 PF08267 Cobalamin-independent synthase, N-terminal domain PJW04_01580 PF01717 Cobalamin-independent synthase, Catalytic domain PJW04_01590 PF03812 2-keto-3-deoxygluconate permease PJW04_01600 PF05368 NmrA-like family PJW04_01605 PF01638 HxlR-like helix-turn-helix PJW04_01675 PF13495 Phage integrase, N-terminal SAM-like domain PJW04_01675 PF00589 Phage integrase family PJW04_01680 PF00920 Dehydratase family PJW04_01695 PF00132 Bacterial transferase hexapeptide (six repeats) PJW04_01705 PF07690 Major Facilitator Superfamily PJW04_01710 PF01966 HD domain PJW04_01710 PF11871 Domain of unknown function (DUF3391) PJW04_01730 PF00171 Aldehyde dehydrogenase family PJW04_01740 PF01494 FAD binding domain PJW04_01750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PJW04_01750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PJW04_01755 PF00230 Major intrinsic protein PJW04_01760 PF01266 FAD dependent oxidoreductase PJW04_01760 PF16901 C-terminal domain of alpha-glycerophosphate oxidase PJW04_01765 PF00455 DeoR C terminal sensor domain PJW04_01765 PF08220 DeoR-like helix-turn-helix domain PJW04_01770 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_01770 PF00970 Oxidoreductase FAD-binding domain PJW04_01775 PF00355 Rieske [2Fe-2S] domain PJW04_01780 PF01144 Coenzyme A transferase PJW04_01785 PF01144 Coenzyme A transferase PJW04_01790 PF00108 Thiolase, N-terminal domain PJW04_01790 PF02803 Thiolase, C-terminal domain PJW04_01795 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal PJW04_01795 PF00775 Dioxygenase PJW04_01805 PF00206 Lyase PJW04_01805 PF10397 Adenylosuccinate lyase C-terminus PJW04_01810 PF12146 Serine aminopeptidase, S33 PJW04_01815 PF02627 Carboxymuconolactone decarboxylase family PJW04_01830 PF09339 IclR helix-turn-helix domain PJW04_01830 PF01614 Bacterial transcriptional regulator PJW04_01840 PF07859 alpha/beta hydrolase fold PJW04_01845 PF10677 Protein of unknown function (DUF2490) PJW04_01850 PF13932 GidA associated domain PJW04_01850 PF01134 Glucose inhibited division protein A PJW04_01860 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_01880 PF13649 Methyltransferase domain PJW04_01885 PF00106 short chain dehydrogenase PJW04_01890 PF12697 Alpha/beta hydrolase family PJW04_01900 PF00155 Aminotransferase class I and II PJW04_01905 PF04055 Radical SAM superfamily PJW04_01905 PF06968 Biotin and Thiamin Synthesis associated domain PJW04_01915 PF01040 UbiA prenyltransferase family PJW04_01935 PF05819 NolX protein PJW04_01975 PF01313 Bacterial export proteins, family 3 PJW04_01980 PF00813 FliP family PJW04_01995 PF00771 FHIPEP family PJW04_02000 PF01312 FlhB HrpN YscU SpaS Family PJW04_02015 PF01514 Secretory protein of YscJ/FliF family PJW04_02030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJW04_02030 PF02874 ATP synthase alpha/beta family, beta-barrel domain PJW04_02030 PF18269 T3SS EscN ATPase C-terminal domain PJW04_02040 PF01311 Bacterial export proteins, family 1 PJW04_02045 PF00263 Bacterial type II and III secretion system protein PJW04_02045 PF03958 Bacterial type II/III secretion system short domain PJW04_02070 PF01464 Transglycosylase SLT domain PJW04_02085 PF00924 Mechanosensitive ion channel PJW04_02085 PF12794 Mechanosensitive ion channel inner membrane domain 1 PJW04_02085 PF12795 Mechanosensitive ion channel porin domain PJW04_02090 PF00884 Sulfatase PJW04_02095 PF03109 ABC1 family PJW04_02100 PF05661 Protein of unknown function (DUF808) PJW04_02105 PF00990 Diguanylate cyclase, GGDEF domain PJW04_02110 PF08323 Starch synthase catalytic domain PJW04_02110 PF00534 Glycosyl transferases group 1 PJW04_02115 PF00128 Alpha amylase, catalytic domain PJW04_02115 PF02806 Alpha amylase, C-terminal all-beta domain PJW04_02115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PJW04_02120 PF00128 Alpha amylase, catalytic domain PJW04_02120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PJW04_02120 PF11941 Domain of unknown function (DUF3459) PJW04_02125 PF02446 4-alpha-glucanotransferase PJW04_02130 PF00128 Alpha amylase, catalytic domain PJW04_02140 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PJW04_02140 PF00128 Alpha amylase, catalytic domain PJW04_02145 PF13460 NAD(P)H-binding PJW04_02160 PF06903 VirK protein PJW04_02165 PF02321 Outer membrane efflux protein PJW04_02180 PF00873 AcrB/AcrD/AcrF family PJW04_02195 PF00270 DEAD/DEAH box helicase PJW04_02195 PF00271 Helicase conserved C-terminal domain PJW04_02205 PF02817 e3 binding domain PJW04_02205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJW04_02205 PF00364 Biotin-requiring enzyme PJW04_02215 PF02779 Transketolase, pyrimidine binding domain PJW04_02215 PF02780 Transketolase, C-terminal domain PJW04_02220 PF00676 Dehydrogenase E1 component PJW04_02230 PF03301 Tryptophan 2,3-dioxygenase PJW04_02235 PF00854 POT family PJW04_02245 PF01047 MarR family PJW04_02250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PJW04_02255 PF04480 Protein of unknown function (DUF559) PJW04_02260 PF04209 homogentisate 1,2-dioxygenase PJW04_02275 PF03334 Na+/H+ antiporter subunit PJW04_02280 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PJW04_02290 PF00361 Proton-conducting membrane transporter PJW04_02295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PJW04_02300 PF13244 Domain of unknown function (DUF4040) PJW04_02300 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PJW04_02300 PF00361 Proton-conducting membrane transporter PJW04_02300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PJW04_02315 PF07504 Fungalysin/Thermolysin Propeptide Motif PJW04_02315 PF01447 Thermolysin metallopeptidase, catalytic domain PJW04_02315 PF02868 Thermolysin metallopeptidase, alpha-helical domain PJW04_02315 PF01483 Proprotein convertase P-domain PJW04_02320 PF00182 Chitinase class I PJW04_02340 PF01259 SAICAR synthetase PJW04_02345 PF05099 Tellurite resistance protein TerB PJW04_02345 PF00226 DnaJ domain PJW04_02350 PF00834 Ribulose-phosphate 3 epimerase family PJW04_02355 PF00583 Acetyltransferase (GNAT) family PJW04_02360 PF00781 Diacylglycerol kinase catalytic domain PJW04_02365 PF00425 chorismate binding enzyme PJW04_02365 PF04715 Anthranilate synthase component I, N terminal region PJW04_02380 PF00117 Glutamine amidotransferase class-I PJW04_02390 PF00591 Glycosyl transferase family, a/b domain PJW04_02390 PF02885 Glycosyl transferase family, helical bundle domain PJW04_02395 PF00218 Indole-3-glycerol phosphate synthase PJW04_02405 PF00325 Bacterial regulatory proteins, crp family PJW04_02405 PF00027 Cyclic nucleotide-binding domain PJW04_02410 PF02675 S-adenosylmethionine decarboxylase PJW04_02415 PF00893 Small Multidrug Resistance protein PJW04_02420 PF03232 Ubiquinone biosynthesis protein COQ7 PJW04_02425 PF00572 Ribosomal protein L13 PJW04_02430 PF00380 Ribosomal protein S9/S16 PJW04_02445 PF00293 NUDIX domain PJW04_02455 PF00210 Ferritin-like domain PJW04_02460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_02460 PF00672 HAMP domain PJW04_02460 PF00512 His Kinase A (phospho-acceptor) domain PJW04_02460 PF01627 Hpt domain PJW04_02460 PF00072 Response regulator receiver domain PJW04_02460 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PJW04_02465 PF00072 Response regulator receiver domain PJW04_02465 PF00486 Transcriptional regulatory protein, C terminal PJW04_02485 PF01521 Iron-sulphur cluster biosynthesis PJW04_02495 PF00293 NUDIX domain PJW04_02495 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain PJW04_02495 PF09297 NADH pyrophosphatase zinc ribbon domain PJW04_02500 PF17113 Regulatory signalling modulator protein AmpE PJW04_02500 PF03186 CobD/Cbib protein PJW04_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_02520 PF03466 LysR substrate binding domain PJW04_02525 PF07690 Major Facilitator Superfamily PJW04_02530 PF12805 FUSC-like inner membrane protein yccS PJW04_02535 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PJW04_02535 PF02843 Phosphoribosylglycinamide synthetase, C domain PJW04_02535 PF02844 Phosphoribosylglycinamide synthetase, N domain PJW04_02545 PF02142 MGS-like domain PJW04_02545 PF01808 AICARFT/IMPCHase bienzyme PJW04_02550 PF01066 CDP-alcohol phosphatidyltransferase PJW04_02555 PF12147 Putative methyltransferase PJW04_02555 PF12146 Serine aminopeptidase, S33 PJW04_02560 PF00782 Dual specificity phosphatase, catalytic domain PJW04_02590 PF02954 Bacterial regulatory protein, Fis family PJW04_02600 PF01381 Helix-turn-helix PJW04_02630 PF00289 Biotin carboxylase, N-terminal domain PJW04_02630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJW04_02630 PF02785 Biotin carboxylase C-terminal domain PJW04_02640 PF00364 Biotin-requiring enzyme PJW04_02645 PF01220 Dehydroquinase class II PJW04_02650 PF02683 Cytochrome C biogenesis protein transmembrane region PJW04_02650 PF11412 Disulphide bond corrector protein DsbC PJW04_02655 PF03091 CutA1 divalent ion tolerance protein PJW04_02665 PF04231 Endonuclease I PJW04_02675 PF00166 Chaperonin 10 Kd subunit PJW04_02680 PF00118 TCP-1/cpn60 chaperonin family PJW04_02690 PF07715 TonB-dependent Receptor Plug Domain PJW04_02690 PF00593 TonB dependent receptor PJW04_02695 PF00793 DAHP synthetase I family PJW04_02710 PF08450 SMP-30/Gluconolactonase/LRE-like region PJW04_02720 PF03710 Glutamate-ammonia ligase adenylyltransferase PJW04_02720 PF08335 GlnD PII-uridylyltransferase PJW04_02725 PF02592 Putative vitamin uptake transporter PJW04_02750 PF00881 Nitroreductase family PJW04_02755 PF04264 YceI-like domain PJW04_02780 PF16957 Malonate decarboxylase, alpha subunit, transporter PJW04_02785 PF06857 Malonate decarboxylase delta subunit (MdcD) PJW04_02790 PF01039 Carboxyl transferase domain PJW04_02800 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG PJW04_02805 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase PJW04_02810 PF00698 Acyl transferase domain PJW04_02820 PF07729 FCD domain PJW04_02820 PF00392 Bacterial regulatory proteins, gntR family PJW04_02825 PF13419 Haloacid dehalogenase-like hydrolase PJW04_02860 PF00456 Transketolase, thiamine diphosphate binding domain PJW04_02860 PF17831 Pyruvate dehydrogenase E1 component middle domain PJW04_03005 PF00106 short chain dehydrogenase PJW04_03015 PF13409 Glutathione S-transferase, N-terminal domain PJW04_03060 PF07759 Protein of unknown function (DUF1615) PJW04_03065 PF00990 Diguanylate cyclase, GGDEF domain PJW04_03070 PF02082 Transcriptional regulator PJW04_03075 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_03095 PF00892 EamA-like transporter family PJW04_03100 PF00497 Bacterial extracellular solute-binding proteins, family 3 PJW04_03110 PF00324 Amino acid permease PJW04_03120 PF01544 CorA-like Mg2+ transporter protein PJW04_03130 PF01204 Trehalase PJW04_03140 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PJW04_03140 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PJW04_03160 PF03707 Bacterial signalling protein N terminal repeat PJW04_03160 PF00990 Diguanylate cyclase, GGDEF domain PJW04_03160 PF00563 EAL domain PJW04_03165 PF00672 HAMP domain PJW04_03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_03165 PF02203 Tar ligand binding domain homologue PJW04_03170 PF00553 Cellulose binding domain PJW04_03170 PF00150 Cellulase (glycosyl hydrolase family 5) PJW04_03175 PF01740 STAS domain PJW04_03175 PF00916 Sulfate permease family PJW04_03180 PF00990 Diguanylate cyclase, GGDEF domain PJW04_03190 PF13632 Glycosyl transferase family group 2 PJW04_03200 PF06580 Histidine kinase PJW04_03200 PF07694 5TMR of 5TMR-LYT PJW04_03205 PF00072 Response regulator receiver domain PJW04_03205 PF04397 LytTr DNA-binding domain PJW04_03210 PF03900 Porphobilinogen deaminase, C-terminal domain PJW04_03210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PJW04_03245 PF00326 Prolyl oligopeptidase family PJW04_03245 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PJW04_03250 PF00155 Aminotransferase class I and II PJW04_03255 PF00326 Prolyl oligopeptidase family PJW04_03255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain PJW04_03260 PF04304 Protein of unknown function (DUF454) PJW04_03270 PF01678 Diaminopimelate epimerase PJW04_03280 PF02899 Phage integrase, N-terminal SAM-like domain PJW04_03280 PF00589 Phage integrase family PJW04_03285 PF00227 Proteasome subunit PJW04_03290 PF07724 AAA domain (Cdc48 subfamily) PJW04_03290 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_03290 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_03300 PF13673 Acetyltransferase (GNAT) domain PJW04_03305 PF13533 Biotin-lipoyl like PJW04_03315 PF01209 ubiE/COQ5 methyltransferase family PJW04_03320 PF03707 Bacterial signalling protein N terminal repeat PJW04_03320 PF00990 Diguanylate cyclase, GGDEF domain PJW04_03320 PF00563 EAL domain PJW04_03325 PF01433 Peptidase family M1 domain PJW04_03325 PF11838 ERAP1-like C-terminal domain PJW04_03340 PF13360 PQQ-like domain PJW04_03360 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_03360 PF00107 Zinc-binding dehydrogenase PJW04_03370 PF02954 Bacterial regulatory protein, Fis family PJW04_03370 PF00158 Sigma-54 interaction domain PJW04_03370 PF01590 GAF domain PJW04_03375 PF00294 pfkB family carbohydrate kinase PJW04_03385 PF04085 rod shape-determining protein MreC PJW04_03395 PF03717 Penicillin-binding Protein dimerisation domain PJW04_03395 PF00905 Penicillin binding protein transpeptidase domain PJW04_03400 PF01098 Cell cycle protein PJW04_03410 PF00295 Glycosyl hydrolases family 28 PJW04_03415 PF13406 Transglycosylase SLT domain PJW04_03420 PF03330 Lytic transglycolase PJW04_03420 PF05036 Sporulation related domain PJW04_03425 PF07943 Penicillin-binding protein 5, C-terminal domain PJW04_03425 PF00768 D-alanyl-D-alanine carboxypeptidase PJW04_03435 PF04359 Protein of unknown function (DUF493) PJW04_03440 PF03099 Biotin/lipoate A/B protein ligase family PJW04_03445 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PJW04_03445 PF04055 Radical SAM superfamily PJW04_03450 PF03572 Peptidase family S41 PJW04_03450 PF11818 C-terminal domain of tail specific protease (DUF3340) PJW04_03450 PF17804 Tail specific protease N-terminal domain PJW04_03450 PF00595 PDZ domain PJW04_03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_03460 PF03466 LysR substrate binding domain PJW04_03470 PF00293 NUDIX domain PJW04_03470 PF01467 Cytidylyltransferase-like PJW04_03505 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PJW04_03505 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PJW04_03510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PJW04_03510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJW04_03515 PF04972 BON domain PJW04_03520 PF00360 Phytochrome region PJW04_03520 PF08446 PAS fold PJW04_03520 PF00512 His Kinase A (phospho-acceptor) domain PJW04_03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_03520 PF01590 GAF domain PJW04_03525 PF00072 Response regulator receiver domain PJW04_03530 PF00512 His Kinase A (phospho-acceptor) domain PJW04_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_03535 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PJW04_03540 PF00106 short chain dehydrogenase PJW04_03580 PF03958 Bacterial type II/III secretion system short domain PJW04_03580 PF00263 Bacterial type II and III secretion system protein PJW04_03585 PF00437 Type II/IV secretion system protein PJW04_03590 PF00482 Type II secretion system (T2SS), protein F PJW04_03595 PF07963 Prokaryotic N-terminal methylation motif PJW04_03595 PF08334 Type II secretion system (T2SS), protein G PJW04_03600 PF12019 Type II transport protein GspH PJW04_03600 PF07963 Prokaryotic N-terminal methylation motif PJW04_03605 PF07963 Prokaryotic N-terminal methylation motif PJW04_03605 PF02501 Type II secretion system (T2SS), protein I PJW04_03610 PF07963 Prokaryotic N-terminal methylation motif PJW04_03610 PF11612 Type II secretion system (T2SS), protein J PJW04_03615 PF03934 Type II secretion system (T2SS), protein K PJW04_03635 PF00392 Bacterial regulatory proteins, gntR family PJW04_03635 PF07702 UTRA domain PJW04_03640 PF07690 Major Facilitator Superfamily PJW04_03645 PF00356 Bacterial regulatory proteins, lacI family PJW04_03650 PF01380 SIS domain PJW04_03655 PF01979 Amidohydrolase family PJW04_03670 PF01966 HD domain PJW04_03670 PF01743 Poly A polymerase head domain PJW04_03670 PF12627 Probable RNA and SrmB- binding site of polymerase A PJW04_03675 PF05199 GMC oxidoreductase PJW04_03675 PF00732 GMC oxidoreductase PJW04_03680 PF00171 Aldehyde dehydrogenase family PJW04_03685 PF02028 BCCT, betaine/carnitine/choline family transporter PJW04_03700 PF01323 DSBA-like thioredoxin domain PJW04_03710 PF00034 Cytochrome c PJW04_03715 PF01926 50S ribosome-binding GTPase PJW04_03720 PF04107 Glutamate-cysteine ligase family 2(GCS2) PJW04_03725 PF00672 HAMP domain PJW04_03725 PF00512 His Kinase A (phospho-acceptor) domain PJW04_03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_03730 PF00486 Transcriptional regulatory protein, C terminal PJW04_03730 PF00072 Response regulator receiver domain PJW04_03745 PF02583 Metal-sensitive transcriptional repressor PJW04_03750 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_03750 PF00107 Zinc-binding dehydrogenase PJW04_03755 PF04828 Glutathione-dependent formaldehyde-activating enzyme PJW04_03760 PF00756 Putative esterase PJW04_03770 PF00005 ABC transporter PJW04_03770 PF12848 ABC transporter PJW04_03780 PF00464 Serine hydroxymethyltransferase PJW04_03785 PF03477 ATP cone domain PJW04_03795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PJW04_03795 PF01872 RibD C-terminal domain PJW04_03805 PF00677 Lumazine binding domain PJW04_03815 PF00885 6,7-dimethyl-8-ribityllumazine synthase PJW04_03820 PF01029 NusB family PJW04_03825 PF00586 AIR synthase related protein, N-terminal domain PJW04_03825 PF02769 AIR synthase related protein, C-terminal domain PJW04_03845 PF03814 Potassium-transporting ATPase A subunit PJW04_03855 PF02669 K+-transporting ATPase, c chain PJW04_03860 PF13493 Domain of unknown function (DUF4118) PJW04_03860 PF13492 GAF domain PJW04_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_03860 PF00512 His Kinase A (phospho-acceptor) domain PJW04_03860 PF02702 Osmosensitive K+ channel His kinase sensor domain PJW04_03865 PF00072 Response regulator receiver domain PJW04_03865 PF00486 Transcriptional regulatory protein, C terminal PJW04_03875 PF02913 FAD linked oxidases, C-terminal domain PJW04_03875 PF01565 FAD binding domain PJW04_03880 PF04307 LexA-binding, inner membrane-associated putative hydrolase PJW04_03885 PF02021 Uncharacterised protein family UPF0102 PJW04_03895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJW04_03920 PF02381 MraZ protein, putative antitoxin-like PJW04_03925 PF01795 MraW methylase family PJW04_03930 PF04999 Cell division protein FtsL PJW04_03935 PF00905 Penicillin binding protein transpeptidase domain PJW04_03935 PF03717 Penicillin-binding Protein dimerisation domain PJW04_03940 PF08245 Mur ligase middle domain PJW04_03940 PF02875 Mur ligase family, glutamate ligase domain PJW04_03940 PF01225 Mur ligase family, catalytic domain PJW04_03945 PF08245 Mur ligase middle domain PJW04_03945 PF02875 Mur ligase family, glutamate ligase domain PJW04_03945 PF01225 Mur ligase family, catalytic domain PJW04_03950 PF00953 Glycosyl transferase family 4 PJW04_03955 PF01098 Cell cycle protein PJW04_03960 PF03033 Glycosyltransferase family 28 N-terminal domain PJW04_03960 PF04101 Glycosyltransferase family 28 C-terminal domain PJW04_03965 PF08245 Mur ligase middle domain PJW04_03965 PF02875 Mur ligase family, glutamate ligase domain PJW04_03965 PF01225 Mur ligase family, catalytic domain PJW04_03970 PF01820 D-ala D-ala ligase N-terminus PJW04_03970 PF07478 D-ala D-ala ligase C-terminus PJW04_03975 PF03799 Cell division protein FtsQ PJW04_03975 PF08478 POTRA domain, FtsQ-type PJW04_03980 PF02491 SHS2 domain inserted in FTSA PJW04_03985 PF12327 FtsZ family, C-terminal domain PJW04_03985 PF00091 Tubulin/FtsZ family, GTPase domain PJW04_03990 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase PJW04_04000 PF01551 Peptidase family M23 PJW04_04000 PF08525 Opacity-associated protein A N-terminal motif PJW04_04000 PF01476 LysM domain PJW04_04005 PF01043 SecA preprotein cross-linking domain PJW04_04005 PF07517 SecA DEAD-like domain PJW04_04005 PF02810 SEC-C motif PJW04_04005 PF07516 SecA Wing and Scaffold domain PJW04_04010 PF00293 NUDIX domain PJW04_04020 PF02219 Methylenetetrahydrofolate reductase PJW04_04030 PF00698 Acyl transferase domain PJW04_04030 PF14765 Polyketide synthase dehydratase PJW04_04030 PF00550 Phosphopantetheine attachment site PJW04_04030 PF08659 KR domain PJW04_04030 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_04030 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_04030 PF16197 Ketoacyl-synthetase C-terminal extension PJW04_04030 PF00107 Zinc-binding dehydrogenase PJW04_04030 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_04035 PF09286 Pro-kumamolisin, activation domain PJW04_04035 PF00082 Subtilase family PJW04_04045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJW04_04050 PF00128 Alpha amylase, catalytic domain PJW04_04075 PF13649 Methyltransferase domain PJW04_04080 PF05221 S-adenosyl-L-homocysteine hydrolase PJW04_04080 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PJW04_04090 PF00311 Phosphoenolpyruvate carboxylase PJW04_04110 PF01389 OmpA-like transmembrane domain PJW04_04110 PF00691 OmpA family PJW04_04125 PF00328 Histidine phosphatase superfamily (branch 2) PJW04_04130 PF02773 S-adenosylmethionine synthetase, C-terminal domain PJW04_04130 PF02772 S-adenosylmethionine synthetase, central domain PJW04_04130 PF00438 S-adenosylmethionine synthetase, N-terminal domain PJW04_04140 PF13649 Methyltransferase domain PJW04_04145 PF01207 Dihydrouridine synthase (Dus) PJW04_04155 PF00294 pfkB family carbohydrate kinase PJW04_04160 PF07670 Nucleoside recognition PJW04_04160 PF07662 Na+ dependent nucleoside transporter C-terminus PJW04_04160 PF01773 Na+ dependent nucleoside transporter N-terminus PJW04_04165 PF00248 Aldo/keto reductase family PJW04_04175 PF07715 TonB-dependent Receptor Plug Domain PJW04_04175 PF00593 TonB dependent receptor PJW04_04195 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_04200 PF00005 ABC transporter PJW04_04210 PF02668 Taurine catabolism dioxygenase TauD, TfdA family PJW04_04220 PF00005 ABC transporter PJW04_04225 PF13472 GDSL-like Lipase/Acylhydrolase family PJW04_04230 PF00072 Response regulator receiver domain PJW04_04230 PF00486 Transcriptional regulatory protein, C terminal PJW04_04235 PF00512 His Kinase A (phospho-acceptor) domain PJW04_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_04235 PF08521 Two-component sensor kinase N-terminal PJW04_04245 PF01219 Prokaryotic diacylglycerol kinase PJW04_04265 PF01790 Prolipoprotein diacylglyceryl transferase PJW04_04270 PF00303 Thymidylate synthase PJW04_04280 PF00186 Dihydrofolate reductase PJW04_04285 PF00149 Calcineurin-like phosphoesterase PJW04_04290 PF04379 ApaG domain PJW04_04295 PF00398 Ribosomal RNA adenine dimethylase PJW04_04300 PF04166 Pyridoxal phosphate biosynthetic protein PdxA PJW04_04305 PF00639 PPIC-type PPIASE domain PJW04_04305 PF09312 SurA N-terminal domain PJW04_04310 PF03968 OstA-like protein PJW04_04310 PF04453 LPS transport system D PJW04_04315 PF00850 Histone deacetylase domain PJW04_04320 PF01923 Cobalamin adenosyltransferase PJW04_04330 PF01494 FAD binding domain PJW04_04335 PF01494 FAD binding domain PJW04_04355 PF00392 Bacterial regulatory proteins, gntR family PJW04_04355 PF07729 FCD domain PJW04_04360 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PJW04_04365 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit PJW04_04365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PJW04_04370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_04370 PF03466 LysR substrate binding domain PJW04_04375 PF13193 AMP-binding enzyme C-terminal domain PJW04_04375 PF00501 AMP-binding enzyme PJW04_04380 PF00171 Aldehyde dehydrogenase family PJW04_04385 PF00378 Enoyl-CoA hydratase/isomerase PJW04_04405 PF08450 SMP-30/Gluconolactonase/LRE-like region PJW04_04410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJW04_04410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain PJW04_04415 PF18125 RlmM ferredoxin-like domain PJW04_04415 PF01728 FtsJ-like methyltransferase PJW04_04435 PF00892 EamA-like transporter family PJW04_04445 PF00749 tRNA synthetases class I (E and Q), catalytic domain PJW04_04445 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain PJW04_04460 PF00072 Response regulator receiver domain PJW04_04460 PF00486 Transcriptional regulatory protein, C terminal PJW04_04465 PF17149 Periplasmic sensor domain found in signal transduction proteins PJW04_04465 PF00672 HAMP domain PJW04_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_04465 PF00512 His Kinase A (phospho-acceptor) domain PJW04_04465 PF00072 Response regulator receiver domain PJW04_04465 PF01627 Hpt domain PJW04_04470 PF00072 Response regulator receiver domain PJW04_04470 PF00196 Bacterial regulatory proteins, luxR family PJW04_04480 PF01625 Peptide methionine sulfoxide reductase PJW04_04490 PF00923 Transaldolase/Fructose-6-phosphate aldolase PJW04_04495 PF14760 Rnk N-terminus PJW04_04495 PF01272 Transcription elongation factor, GreA/GreB, C-term PJW04_04505 PF03466 LysR substrate binding domain PJW04_04505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_04510 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_04510 PF13192 Thioredoxin domain PJW04_04515 PF00578 AhpC/TSA family PJW04_04515 PF10417 C-terminal domain of 1-Cys peroxiredoxin PJW04_04520 PF17827 PrmC N-terminal domain PJW04_04520 PF05175 Methyltransferase small domain PJW04_04525 PF00561 alpha/beta hydrolase fold PJW04_04535 PF00293 NUDIX domain PJW04_04540 PF01367 5'-3' exonuclease, C-terminal SAM fold PJW04_04540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PJW04_04540 PF00476 DNA polymerase family A PJW04_04540 PF01612 3'-5' exonuclease PJW04_04555 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PJW04_04555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain PJW04_04555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PJW04_04575 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch PJW04_04580 PF02233 NAD(P) transhydrogenase beta subunit PJW04_04595 PF01063 Amino-transferase class IV PJW04_04600 PF00082 Subtilase family PJW04_04600 PF04151 Bacterial pre-peptidase C-terminal domain PJW04_04605 PF04151 Bacterial pre-peptidase C-terminal domain PJW04_04605 PF00082 Subtilase family PJW04_04610 PF04151 Bacterial pre-peptidase C-terminal domain PJW04_04610 PF00082 Subtilase family PJW04_04615 PF04073 Aminoacyl-tRNA editing domain PJW04_04625 PF17189 Glycosyl hydrolase family 30 beta sandwich domain PJW04_04625 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain PJW04_04635 PF03358 NADPH-dependent FMN reductase PJW04_04640 PF03631 Virulence factor BrkB PJW04_04645 PF08534 Redoxin PJW04_04650 PF00708 Acylphosphatase PJW04_04660 PF03976 Polyphosphate kinase 2 (PPK2) PJW04_04665 PF00994 Probable molybdopterin binding domain PJW04_04675 PF03462 PCRF domain PJW04_04675 PF00472 RF-1 domain PJW04_04680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PJW04_04680 PF01488 Shikimate / quinate 5-dehydrogenase PJW04_04680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PJW04_04690 PF03550 Outer membrane lipoprotein LolB PJW04_04695 PF08544 GHMP kinases C terminal PJW04_04695 PF00288 GHMP kinases N terminal domain PJW04_04705 PF14572 Phosphoribosyl synthetase-associated domain PJW04_04705 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PJW04_04710 PF01386 Ribosomal L25p family PJW04_04710 PF14693 Ribosomal protein TL5, C-terminal domain PJW04_04715 PF01195 Peptidyl-tRNA hydrolase PJW04_04720 PF01926 50S ribosome-binding GTPase PJW04_04720 PF06071 Protein of unknown function (DUF933) PJW04_04740 PF03144 Elongation factor Tu domain 2 PJW04_04740 PF03143 Elongation factor Tu C-terminal domain PJW04_04740 PF00009 Elongation factor Tu GTP binding domain PJW04_04750 PF00584 SecE/Sec61-gamma subunits of protein translocation complex PJW04_04755 PF02357 Transcription termination factor nusG PJW04_04755 PF00467 KOW motif PJW04_04760 PF03946 Ribosomal protein L11, N-terminal domain PJW04_04760 PF00298 Ribosomal protein L11, RNA binding domain PJW04_04765 PF00687 Ribosomal protein L1p/L10e family PJW04_04770 PF00466 Ribosomal protein L10 PJW04_04775 PF16320 Ribosomal protein L7/L12 dimerisation domain PJW04_04775 PF00542 Ribosomal protein L7/L12 C-terminal domain PJW04_04780 PF04563 RNA polymerase beta subunit PJW04_04780 PF04561 RNA polymerase Rpb2, domain 2 PJW04_04780 PF04565 RNA polymerase Rpb2, domain 3 PJW04_04780 PF10385 RNA polymerase beta subunit external 1 domain PJW04_04780 PF00562 RNA polymerase Rpb2, domain 6 PJW04_04780 PF04560 RNA polymerase Rpb2, domain 7 PJW04_04785 PF04997 RNA polymerase Rpb1, domain 1 PJW04_04785 PF00623 RNA polymerase Rpb1, domain 2 PJW04_04785 PF04983 RNA polymerase Rpb1, domain 3 PJW04_04785 PF05000 RNA polymerase Rpb1, domain 4 PJW04_04785 PF04998 RNA polymerase Rpb1, domain 5 PJW04_04790 PF00164 Ribosomal protein S12/S23 PJW04_04795 PF00177 Ribosomal protein S7p/S5e PJW04_04800 PF00009 Elongation factor Tu GTP binding domain PJW04_04800 PF03764 Elongation factor G, domain IV PJW04_04800 PF14492 Elongation Factor G, domain II PJW04_04800 PF03144 Elongation factor Tu domain 2 PJW04_04800 PF00679 Elongation factor G C-terminus PJW04_04805 PF03143 Elongation factor Tu C-terminal domain PJW04_04805 PF03144 Elongation factor Tu domain 2 PJW04_04805 PF00009 Elongation factor Tu GTP binding domain PJW04_04815 PF00338 Ribosomal protein S10p/S20e PJW04_04820 PF00297 Ribosomal protein L3 PJW04_04825 PF00573 Ribosomal protein L4/L1 family PJW04_04830 PF00276 Ribosomal protein L23 PJW04_04835 PF00181 Ribosomal Proteins L2, RNA binding domain PJW04_04835 PF03947 Ribosomal Proteins L2, C-terminal domain PJW04_04840 PF00203 Ribosomal protein S19 PJW04_04845 PF00237 Ribosomal protein L22p/L17e PJW04_04850 PF00189 Ribosomal protein S3, C-terminal domain PJW04_04850 PF07650 KH domain PJW04_04855 PF00252 Ribosomal protein L16p/L10e PJW04_04860 PF00831 Ribosomal L29 protein PJW04_04865 PF00366 Ribosomal protein S17 PJW04_04870 PF00238 Ribosomal protein L14p/L23e PJW04_04875 PF00467 KOW motif PJW04_04875 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PJW04_04880 PF00281 Ribosomal protein L5 PJW04_04880 PF00673 ribosomal L5P family C-terminus PJW04_04885 PF00253 Ribosomal protein S14p/S29e PJW04_04890 PF00410 Ribosomal protein S8 PJW04_04895 PF00347 Ribosomal protein L6 PJW04_04900 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PJW04_04905 PF00333 Ribosomal protein S5, N-terminal domain PJW04_04905 PF03719 Ribosomal protein S5, C-terminal domain PJW04_04910 PF00327 Ribosomal protein L30p/L7e PJW04_04915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PJW04_04920 PF00344 SecY translocase PJW04_04925 PF00416 Ribosomal protein S13/S18 PJW04_04930 PF00411 Ribosomal protein S11 PJW04_04935 PF01479 S4 domain PJW04_04935 PF00163 Ribosomal protein S4/S9 N-terminal domain PJW04_04940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PJW04_04940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PJW04_04940 PF01000 RNA polymerase Rpb3/RpoA insert domain PJW04_04945 PF01196 Ribosomal protein L17 PJW04_04950 PF02600 Disulfide bond formation protein DsbB PJW04_04965 PF01474 Class-II DAHP synthetase family PJW04_04975 PF01425 Amidase PJW04_04985 PF00679 Elongation factor G C-terminus PJW04_04985 PF03144 Elongation factor Tu domain 2 PJW04_04985 PF00009 Elongation factor Tu GTP binding domain PJW04_04990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PJW04_04995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PJW04_04995 PF00056 lactate/malate dehydrogenase, NAD binding domain PJW04_05000 PF00043 Glutathione S-transferase, C-terminal domain PJW04_05000 PF02798 Glutathione S-transferase, N-terminal domain PJW04_05015 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PJW04_05015 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_05020 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_05020 PF00107 Zinc-binding dehydrogenase PJW04_05025 PF00223 Photosystem I psaA/psaB protein PJW04_05025 PF00691 OmpA family PJW04_05035 PF00849 RNA pseudouridylate synthase PJW04_05045 PF00155 Aminotransferase class I and II PJW04_05055 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_05060 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_05065 PF00005 ABC transporter PJW04_05065 PF17850 CysA C-terminal regulatory domain PJW04_05065 PF12857 TOBE-like domain PJW04_05075 PF00107 Zinc-binding dehydrogenase PJW04_05075 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_05085 PF05506 Domain of unknown function (DUF756) PJW04_05085 PF04185 Phosphoesterase family PJW04_05090 PF10459 Peptidase S46 PJW04_05095 PF00300 Histidine phosphatase superfamily (branch 1) PJW04_05100 PF08245 Mur ligase middle domain PJW04_05100 PF02875 Mur ligase family, glutamate ligase domain PJW04_05115 PF00156 Phosphoribosyl transferase domain PJW04_05120 PF04305 Protein of unknown function (DUF455) PJW04_05135 PF00149 Calcineurin-like phosphoesterase PJW04_05140 PF01569 PAP2 superfamily PJW04_05145 PF13439 Glycosyltransferase Family 4 PJW04_05145 PF00534 Glycosyl transferases group 1 PJW04_05150 PF02541 Ppx/GppA phosphatase family PJW04_05155 PF02503 Polyphosphate kinase middle domain PJW04_05155 PF13090 Polyphosphate kinase C-terminal domain 2 PJW04_05155 PF17941 Polyphosphate kinase C-terminal domain 1 PJW04_05155 PF13089 Polyphosphate kinase N-terminal domain PJW04_05160 PF00989 PAS fold PJW04_05160 PF11808 Phosphate regulon sensor protein PhoR PJW04_05160 PF00512 His Kinase A (phospho-acceptor) domain PJW04_05160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_05165 PF00072 Response regulator receiver domain PJW04_05165 PF00486 Transcriptional regulatory protein, C terminal PJW04_05170 PF13181 Tetratricopeptide repeat PJW04_05170 PF01435 Peptidase family M48 PJW04_05175 PF00462 Glutaredoxin PJW04_05185 PF18324 Hypothetical protein TT1725 PJW04_05185 PF00180 Isocitrate/isopropylmalate dehydrogenase PJW04_05215 PF00989 PAS fold PJW04_05215 PF00512 His Kinase A (phospho-acceptor) domain PJW04_05215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_05225 PF05697 Bacterial trigger factor protein (TF) PJW04_05225 PF05698 Bacterial trigger factor protein (TF) C-terminus PJW04_05230 PF00574 Clp protease PJW04_05235 PF07724 AAA domain (Cdc48 subfamily) PJW04_05235 PF06689 ClpX C4-type zinc finger PJW04_05235 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_05240 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_05240 PF05362 Lon protease (S16) C-terminal proteolytic domain PJW04_05240 PF02190 ATP-dependent protease La (LON) substrate-binding domain PJW04_05245 PF00216 Bacterial DNA-binding protein PJW04_05270 PF01476 LysM domain PJW04_05270 PF05257 CHAP domain PJW04_05275 PF00753 Metallo-beta-lactamase superfamily PJW04_05275 PF16123 Hydroxyacylglutathione hydrolase C-terminus PJW04_05285 PF00075 RNase H PJW04_05290 PF00929 Exonuclease PJW04_05310 PF16793 RepB DNA-primase from phage plasmid PJW04_05310 PF03389 MobA/MobL family PJW04_05355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) PJW04_05365 PF00753 Metallo-beta-lactamase superfamily PJW04_05365 PF12706 Beta-lactamase superfamily domain PJW04_05370 PF04055 Radical SAM superfamily PJW04_05370 PF06463 Molybdenum Cofactor Synthesis C PJW04_05380 PF01967 MoaC family PJW04_05385 PF02597 ThiS family PJW04_05390 PF02391 MoaE protein PJW04_05475 PF04002 RadC-like JAB domain PJW04_05520 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system PJW04_05540 PF12169 DNA polymerase III subunits gamma and tau domain III PJW04_05540 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding PJW04_05540 PF12170 DNA polymerase III tau subunit V interacting with alpha PJW04_05545 PF02575 YbaB/EbfC DNA-binding family PJW04_05550 PF13662 Toprim domain PJW04_05550 PF02132 RecR protein PJW04_05555 PF01230 HIT domain PJW04_05565 PF11992 Domain of unknown function (DUF3488) PJW04_05565 PF13559 Domain of unknown function (DUF4129) PJW04_05565 PF01841 Transglutaminase-like superfamily PJW04_05575 PF07726 ATPase family associated with various cellular activities (AAA) PJW04_05575 PF17863 AAA lid domain PJW04_05590 PF02545 Maf-like protein PJW04_05595 PF02620 Large ribosomal RNA subunit accumulation protein YceD PJW04_05600 PF01783 Ribosomal L32p protein family PJW04_05605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJW04_05605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJW04_05615 PF00698 Acyl transferase domain PJW04_05625 PF00550 Phosphopantetheine attachment site PJW04_05630 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_05630 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_05635 PF04715 Anthranilate synthase component I, N terminal region PJW04_05635 PF00425 chorismate binding enzyme PJW04_05640 PF02618 YceG-like family PJW04_05645 PF09115 DNA polymerase III, delta subunit, C terminal PJW04_05670 PF00158 Sigma-54 interaction domain PJW04_05670 PF02954 Bacterial regulatory protein, Fis family PJW04_05670 PF06506 Propionate catabolism activator PJW04_05680 PF00285 Citrate synthase, C-terminal domain PJW04_05685 PF00330 Aconitase family (aconitate hydratase) PJW04_05685 PF00694 Aconitase C-terminal domain PJW04_05695 PF04303 PrpF protein PJW04_05700 PF07715 TonB-dependent Receptor Plug Domain PJW04_05700 PF00593 TonB dependent receptor PJW04_05710 PF01835 MG2 domain PJW04_05710 PF17962 Bacterial macroglobulin domain 6 PJW04_05710 PF11974 Bacterial alpha-2-macroglobulin MG3 domain PJW04_05710 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain PJW04_05710 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain PJW04_05710 PF07703 Alpha-2-macroglobulin bait region domain PJW04_05710 PF00207 Alpha-2-macroglobulin family PJW04_05710 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain PJW04_05725 PF00905 Penicillin binding protein transpeptidase domain PJW04_05725 PF06832 Penicillin-Binding Protein C-terminus Family PJW04_05725 PF00912 Transglycosylase PJW04_05735 PF08534 Redoxin PJW04_05745 PF00226 DnaJ domain PJW04_05745 PF01556 DnaJ C terminal domain PJW04_05750 PF00072 Response regulator receiver domain PJW04_05755 PF01145 SPFH domain / Band 7 family PJW04_05755 PF12221 Bacterial membrane protein N terminal PJW04_05760 PF01145 SPFH domain / Band 7 family PJW04_05770 PF00709 Adenylosuccinate synthetase PJW04_05775 PF11838 ERAP1-like C-terminal domain PJW04_05775 PF01433 Peptidase family M1 domain PJW04_05790 PF00440 Bacterial regulatory proteins, tetR family PJW04_05805 PF01420 Type I restriction modification DNA specificity domain PJW04_05810 PF02384 N-6 DNA Methylase PJW04_05815 PF02661 Fic/DOC family PJW04_05820 PF08463 EcoEI R protein C-terminal PJW04_05820 PF04851 Type III restriction enzyme, res subunit PJW04_05820 PF00271 Helicase conserved C-terminal domain PJW04_05820 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) PJW04_05845 PF00300 Histidine phosphatase superfamily (branch 1) PJW04_05845 PF13456 Reverse transcriptase-like PJW04_05850 PF01256 Carbohydrate kinase PJW04_05860 PF00723 Glycosyl hydrolases family 15 PJW04_05870 PF07971 Glycosyl hydrolase family 92 PJW04_05870 PF17678 Glycosyl hydrolase family 92 N-terminal domain PJW04_05880 PF00106 short chain dehydrogenase PJW04_05890 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_05910 PF17755 UvrA DNA-binding domain PJW04_05915 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PJW04_05915 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PJW04_05920 PF03450 CO dehydrogenase flavoprotein C-terminal domain PJW04_05920 PF00941 FAD binding domain in molybdopterin dehydrogenase PJW04_05925 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_05925 PF01799 [2Fe-2S] binding domain PJW04_05960 PF01726 LexA DNA binding domain PJW04_05960 PF00717 Peptidase S24-like PJW04_05975 PF07733 Bacterial DNA polymerase III alpha NTPase domain PJW04_05975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PJW04_05975 PF14579 Helix-hairpin-helix motif PJW04_05975 PF02811 PHP domain PJW04_05980 PF00326 Prolyl oligopeptidase family PJW04_05990 PF03169 OPT oligopeptide transporter protein PJW04_06005 PF00326 Prolyl oligopeptidase family PJW04_06005 PF07676 WD40-like Beta Propeller Repeat PJW04_06005 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region PJW04_06020 PF12833 Helix-turn-helix domain PJW04_06020 PF02311 AraC-like ligand binding domain PJW04_06045 PF18011 C-terminal domain found in long catalases PJW04_06045 PF06628 Catalase-related immune-responsive PJW04_06045 PF00199 Catalase PJW04_06050 PF00248 Aldo/keto reductase family PJW04_06055 PF00135 Carboxylesterase family PJW04_06060 PF02347 Glycine cleavage system P-protein PJW04_06080 PF03412 Peptidase C39 family PJW04_06080 PF00005 ABC transporter PJW04_06080 PF00664 ABC transporter transmembrane region PJW04_06085 PF07690 Major Facilitator Superfamily PJW04_06100 PF08019 Phosphoethanolamine transferase EptA/EptB PJW04_06100 PF00884 Sulfatase PJW04_06115 PF00486 Transcriptional regulatory protein, C terminal PJW04_06115 PF00072 Response regulator receiver domain PJW04_06120 PF08521 Two-component sensor kinase N-terminal PJW04_06120 PF00512 His Kinase A (phospho-acceptor) domain PJW04_06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06130 PF03776 Septum formation topological specificity factor MinE PJW04_06135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PJW04_06140 PF05209 Septum formation inhibitor MinC, N-terminal domain PJW04_06140 PF03775 Septum formation inhibitor MinC, C-terminal domain PJW04_06150 PF07730 Histidine kinase PJW04_06155 PF00196 Bacterial regulatory proteins, luxR family PJW04_06155 PF00072 Response regulator receiver domain PJW04_06170 PF00730 HhH-GPD superfamily base excision DNA repair protein PJW04_06195 PF02222 ATP-grasp domain PJW04_06215 PF04376 Arginine-tRNA-protein transferase, N terminus PJW04_06215 PF04377 Arginine-tRNA-protein transferase, C terminus PJW04_06230 PF08281 Sigma-70, region 4 PJW04_06230 PF04542 Sigma-70 region 2 PJW04_06245 PF00378 Enoyl-CoA hydratase/isomerase PJW04_06260 PF00005 ABC transporter PJW04_06260 PF17755 UvrA DNA-binding domain PJW04_06260 PF17760 UvrA interaction domain PJW04_06265 PF00829 Ribosomal prokaryotic L21 protein PJW04_06270 PF01016 Ribosomal L27 protein PJW04_06275 PF01926 50S ribosome-binding GTPase PJW04_06275 PF01018 GTP1/OBG PJW04_06280 PF01649 Ribosomal protein S20 PJW04_06285 PF03023 Lipid II flippase MurJ PJW04_06290 PF06574 FAD synthetase PJW04_06290 PF01687 Riboflavin kinase PJW04_06295 PF08264 Anticodon-binding domain of tRNA PJW04_06295 PF00133 tRNA synthetases class I (I, L, M and V) PJW04_06295 PF06827 Zinc finger found in FPG and IleRS PJW04_06300 PF01252 Signal peptidase (SPase) II PJW04_06305 PF02401 LytB protein PJW04_06315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PJW04_06315 PF06481 COX Aromatic Rich Motif PJW04_06320 PF00115 Cytochrome C and Quinol oxidase polypeptide I PJW04_06325 PF00510 Cytochrome c oxidase subunit III PJW04_06330 PF03626 Prokaryotic Cytochrome C oxidase subunit IV PJW04_06340 PF18073 Rubredoxin metal binding domain PJW04_06345 PF05656 Protein of unknown function (DUF805) PJW04_06355 PF12833 Helix-turn-helix domain PJW04_06360 PF00183 Hsp90 protein PJW04_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06370 PF01740 STAS domain PJW04_06370 PF08678 Rsbr N terminal PJW04_06375 PF01740 STAS domain PJW04_06380 PF13581 Histidine kinase-like ATPase domain PJW04_06390 PF17149 Periplasmic sensor domain found in signal transduction proteins PJW04_06390 PF00672 HAMP domain PJW04_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06390 PF00512 His Kinase A (phospho-acceptor) domain PJW04_06390 PF01627 Hpt domain PJW04_06390 PF00072 Response regulator receiver domain PJW04_06395 PF00512 His Kinase A (phospho-acceptor) domain PJW04_06395 PF13188 PAS domain PJW04_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06395 PF08448 PAS fold PJW04_06395 PF00072 Response regulator receiver domain PJW04_06400 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PJW04_06400 PF04616 Glycosyl hydrolases family 43 PJW04_06405 PF07715 TonB-dependent Receptor Plug Domain PJW04_06405 PF00593 TonB dependent receptor PJW04_06410 PF00085 Thioredoxin PJW04_06415 PF07237 Protein of unknown function (DUF1428) PJW04_06420 PF02702 Osmosensitive K+ channel His kinase sensor domain PJW04_06420 PF00512 His Kinase A (phospho-acceptor) domain PJW04_06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06420 PF13492 GAF domain PJW04_06420 PF13493 Domain of unknown function (DUF4118) PJW04_06425 PF01339 CheB methylesterase PJW04_06430 PF03705 CheR methyltransferase, all-alpha domain PJW04_06430 PF01739 CheR methyltransferase, SAM binding domain PJW04_06435 PF00672 HAMP domain PJW04_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06435 PF00512 His Kinase A (phospho-acceptor) domain PJW04_06435 PF01627 Hpt domain PJW04_06435 PF00072 Response regulator receiver domain PJW04_06435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PJW04_06440 PF00072 Response regulator receiver domain PJW04_06440 PF13426 PAS domain PJW04_06440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_06445 PF00072 Response regulator receiver domain PJW04_06450 PF06964 Alpha-L-arabinofuranosidase C-terminal domain PJW04_06455 PF01263 Aldose 1-epimerase PJW04_06460 PF01578 Cytochrome C assembly protein PJW04_06465 PF00448 SRP54-type protein, GTPase domain PJW04_06465 PF02978 Signal peptide binding domain PJW04_06465 PF02881 SRP54-type protein, helical bundle domain PJW04_06470 PF03060 Nitronate monooxygenase PJW04_06475 PF01063 Amino-transferase class IV PJW04_06480 PF00886 Ribosomal protein S16 PJW04_06485 PF05239 PRC-barrel domain PJW04_06485 PF01782 RimM N-terminal domain PJW04_06490 PF01746 tRNA (Guanine-1)-methyltransferase PJW04_06495 PF01245 Ribosomal protein L19 PJW04_06500 PF01554 MatE PJW04_06515 PF01479 S4 domain PJW04_06520 PF00141 Peroxidase PJW04_06530 PF00488 MutS domain V PJW04_06530 PF01624 MutS domain I PJW04_06530 PF05190 MutS family domain IV PJW04_06530 PF05192 MutS domain III PJW04_06530 PF05188 MutS domain II PJW04_06540 PF03301 Tryptophan 2,3-dioxygenase PJW04_06550 PF00266 Aminotransferase class-V PJW04_06560 PF00155 Aminotransferase class I and II PJW04_06565 PF00672 HAMP domain PJW04_06565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_06580 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 PJW04_06580 PF16355 Domain of unknown function (DUF4982) PJW04_06580 PF00703 Glycosyl hydrolases family 2 PJW04_06580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PJW04_06580 PF02837 Glycosyl hydrolases family 2, sugar binding domain PJW04_06585 PF07745 Glycosyl hydrolase family 53 PJW04_06595 PF01381 Helix-turn-helix PJW04_06595 PF06114 IrrE N-terminal-like domain PJW04_06595 PF09856 Predicted transcriptional regulator (DUF2083) PJW04_06600 PF00171 Aldehyde dehydrogenase family PJW04_06605 PF02770 Acyl-CoA dehydrogenase, middle domain PJW04_06605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJW04_06605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJW04_06610 PF00378 Enoyl-CoA hydratase/isomerase PJW04_06615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PJW04_06615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PJW04_06615 PF00378 Enoyl-CoA hydratase/isomerase PJW04_06620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PJW04_06620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PJW04_06625 PF01545 Cation efflux family PJW04_06630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PJW04_06630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PJW04_06630 PF00378 Enoyl-CoA hydratase/isomerase PJW04_06635 PF04542 Sigma-70 region 2 PJW04_06635 PF08281 Sigma-70, region 4 PJW04_06645 PF13180 PDZ domain PJW04_06650 PF00679 Elongation factor G C-terminus PJW04_06650 PF00009 Elongation factor Tu GTP binding domain PJW04_06650 PF03144 Elongation factor Tu domain 2 PJW04_06650 PF06421 GTP-binding protein LepA C-terminus PJW04_06655 PF10502 Signal peptidase, peptidase S26 PJW04_06665 PF14622 Ribonuclease-III-like PJW04_06665 PF00035 Double-stranded RNA binding motif PJW04_06670 PF07650 KH domain PJW04_06670 PF01926 50S ribosome-binding GTPase PJW04_06675 PF02565 Recombination protein O C terminal PJW04_06675 PF11967 Recombination protein O N terminal PJW04_06685 PF05958 tRNA (Uracil-5-)-methyltransferase PJW04_06690 PF01928 CYTH domain PJW04_06695 PF01323 DSBA-like thioredoxin domain PJW04_06700 PF01593 Flavin containing amine oxidoreductase PJW04_06705 PF04244 Deoxyribodipyrimidine photo-lyase-related protein PJW04_06710 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_06715 PF00156 Phosphoribosyl transferase domain PJW04_06720 PF01048 Phosphorylase superfamily PJW04_06725 PF00313 'Cold-shock' DNA-binding domain PJW04_06730 PF01494 FAD binding domain PJW04_06740 PF00271 Helicase conserved C-terminal domain PJW04_06740 PF00270 DEAD/DEAH box helicase PJW04_06740 PF08494 DEAD/H associated PJW04_06745 PF04679 ATP dependent DNA ligase C terminal region PJW04_06745 PF01068 ATP dependent DNA ligase domain PJW04_06745 PF04675 DNA ligase N terminus PJW04_06755 PF04675 DNA ligase N terminus PJW04_06755 PF01068 ATP dependent DNA ligase domain PJW04_06755 PF04679 ATP dependent DNA ligase C terminal region PJW04_06775 PF00990 Diguanylate cyclase, GGDEF domain PJW04_06775 PF00072 Response regulator receiver domain PJW04_06790 PF02803 Thiolase, C-terminal domain PJW04_06790 PF00108 Thiolase, N-terminal domain PJW04_06795 PF03797 Autotransporter beta-domain PJW04_06795 PF12951 Passenger-associated-transport-repeat PJW04_06795 PF00082 Subtilase family PJW04_06800 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PJW04_06800 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PJW04_06815 PF01863 Protein of unknown function DUF45 PJW04_06820 PF07043 Protein of unknown function (DUF1328) PJW04_06830 PF01258 Prokaryotic dksA/traR C4-type zinc finger PJW04_06850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJW04_06865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family PJW04_06870 PF07690 Major Facilitator Superfamily PJW04_06905 PF09924 Uncharacterised conserved protein (DUF2156) PJW04_06905 PF03706 Lysylphosphatidylglycerol synthase TM region PJW04_06915 PF01042 Endoribonuclease L-PSP PJW04_06960 PF04542 Sigma-70 region 2 PJW04_06960 PF04545 Sigma-70, region 4 PJW04_06975 PF04060 Putative Fe-S cluster PJW04_06985 PF09334 tRNA synthetases class I (M) PJW04_06985 PF01588 Putative tRNA binding domain PJW04_07005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PJW04_07020 PF00324 Amino acid permease PJW04_07025 PF02574 Homocysteine S-methyltransferase PJW04_07035 PF02592 Putative vitamin uptake transporter PJW04_07055 PF03551 Transcriptional regulator PadR-like family PJW04_07075 PF03653 Uncharacterised protein family (UPF0093) PJW04_07090 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PJW04_07095 PF01336 OB-fold nucleic acid binding domain PJW04_07095 PF14579 Helix-hairpin-helix motif PJW04_07095 PF02811 PHP domain PJW04_07095 PF07733 Bacterial DNA polymerase III alpha NTPase domain PJW04_07095 PF17657 Bacterial DNA polymerase III alpha subunit finger domain PJW04_07100 PF01351 Ribonuclease HII PJW04_07105 PF02684 Lipid-A-disaccharide synthetase PJW04_07110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 PJW04_07110 PF00132 Bacterial transferase hexapeptide (six repeats) PJW04_07115 PF07977 FabA-like domain PJW04_07120 PF00132 Bacterial transferase hexapeptide (six repeats) PJW04_07120 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD PJW04_07130 PF07244 Surface antigen variable number repeat PJW04_07130 PF01103 Surface antigen PJW04_07135 PF02163 Peptidase family M50 PJW04_07135 PF17820 PDZ domain PJW04_07140 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PJW04_07140 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PJW04_07140 PF13288 DXP reductoisomerase C-terminal domain PJW04_07150 PF01255 Putative undecaprenyl diphosphate synthase PJW04_07155 PF01765 Ribosome recycling factor PJW04_07160 PF00696 Amino acid kinase family PJW04_07165 PF00990 Diguanylate cyclase, GGDEF domain PJW04_07165 PF00072 Response regulator receiver domain PJW04_07170 PF00889 Elongation factor TS PJW04_07175 PF00318 Ribosomal protein S2 PJW04_07210 PF00557 Metallopeptidase family M24 PJW04_07215 PF01966 HD domain PJW04_07215 PF01909 Nucleotidyltransferase domain PJW04_07215 PF08335 GlnD PII-uridylyltransferase PJW04_07220 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal PJW04_07220 PF14602 Hexapeptide repeat of succinyl-transferase PJW04_07220 PF00132 Bacterial transferase hexapeptide (six repeats) PJW04_07225 PF03960 ArsC family PJW04_07230 PF01546 Peptidase family M20/M25/M40 PJW04_07230 PF07687 Peptidase dimerisation domain PJW04_07235 PF13537 Glutamine amidotransferase domain PJW04_07235 PF00733 Asparagine synthase PJW04_07245 PF00593 TonB dependent receptor PJW04_07245 PF07715 TonB-dependent Receptor Plug Domain PJW04_07250 PF01804 Penicillin amidase PJW04_07255 PF00210 Ferritin-like domain PJW04_07260 PF05724 Thiopurine S-methyltransferase (TPMT) PJW04_07265 PF03989 DNA gyrase C-terminal domain, beta-propeller PJW04_07265 PF00521 DNA gyrase/topoisomerase IV, subunit A PJW04_07280 PF02321 Outer membrane efflux protein PJW04_07285 PF00529 HlyD membrane-fusion protein of T1SS PJW04_07285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_07290 PF07690 Major Facilitator Superfamily PJW04_07315 PF07691 PA14 domain PJW04_07315 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_07315 PF14310 Fibronectin type III-like domain PJW04_07315 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJW04_07325 PF00854 POT family PJW04_07350 PF12802 MarR family PJW04_07355 PF01432 Peptidase family M3 PJW04_07360 PF00255 Glutathione peroxidase PJW04_07365 PF00970 Oxidoreductase FAD-binding domain PJW04_07365 PF00175 Oxidoreductase NAD-binding domain PJW04_07370 PF00005 ABC transporter PJW04_07375 PF05681 Fumarate hydratase (Fumerase) PJW04_07375 PF05683 Fumarase C-terminus PJW04_07390 PF00484 Carbonic anhydrase PJW04_07395 PF02253 Phospholipase A1 PJW04_07405 PF00313 'Cold-shock' DNA-binding domain PJW04_07420 PF00899 ThiF family PJW04_07425 PF01026 TatD related DNase PJW04_07440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJW04_07440 PF02770 Acyl-CoA dehydrogenase, middle domain PJW04_07440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJW04_07450 PF00043 Glutathione S-transferase, C-terminal domain PJW04_07450 PF02798 Glutathione S-transferase, N-terminal domain PJW04_07455 PF13537 Glutamine amidotransferase domain PJW04_07455 PF00733 Asparagine synthase PJW04_07460 PF03358 NADPH-dependent FMN reductase PJW04_07465 PF03796 DnaB-like helicase C terminal domain PJW04_07465 PF00772 DnaB-like helicase N terminal domain PJW04_07470 PF00875 DNA photolyase PJW04_07470 PF03441 FAD binding domain of DNA photolyase PJW04_07475 PF00691 OmpA family PJW04_07475 PF05736 OprF membrane domain PJW04_07480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_07480 PF03466 LysR substrate binding domain PJW04_07495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_07495 PF00529 HlyD membrane-fusion protein of T1SS PJW04_07500 PF00873 AcrB/AcrD/AcrF family PJW04_07505 PF00106 short chain dehydrogenase PJW04_07510 PF02321 Outer membrane efflux protein PJW04_07515 PF00990 Diguanylate cyclase, GGDEF domain PJW04_07525 PF00990 Diguanylate cyclase, GGDEF domain PJW04_07560 PF00082 Subtilase family PJW04_07565 PF01668 SmpB protein PJW04_07570 PF03364 Polyketide cyclase / dehydrase and lipid transport PJW04_07575 PF03658 RnfH family Ubiquitin PJW04_07580 PF04355 SmpA / OmlA family PJW04_07585 PF01475 Ferric uptake regulator family PJW04_07590 PF02463 RecF/RecN/SMC N terminal domain PJW04_07595 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PJW04_07595 PF01628 HrcA protein C terminal domain PJW04_07600 PF01025 GrpE PJW04_07605 PF00012 Hsp70 protein PJW04_07610 PF00684 DnaJ central domain PJW04_07610 PF01556 DnaJ C terminal domain PJW04_07610 PF00226 DnaJ domain PJW04_07615 PF08543 Phosphomethylpyrimidine kinase PJW04_07640 PF00005 ABC transporter PJW04_07640 PF00664 ABC transporter transmembrane region PJW04_07640 PF03412 Peptidase C39 family PJW04_07645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_07645 PF03466 LysR substrate binding domain PJW04_07650 PF00664 ABC transporter transmembrane region PJW04_07650 PF00005 ABC transporter PJW04_07655 PF01205 Uncharacterized protein family UPF0029 PJW04_07660 PF03641 Possible lysine decarboxylase PJW04_07665 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_07665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PJW04_07670 PF00364 Biotin-requiring enzyme PJW04_07670 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJW04_07670 PF02817 e3 binding domain PJW04_07675 PF16870 2-oxoglutarate dehydrogenase C-terminal PJW04_07675 PF02779 Transketolase, pyrimidine binding domain PJW04_07675 PF00676 Dehydrogenase E1 component PJW04_07675 PF16078 2-oxoglutarate dehydrogenase N-terminus PJW04_07685 PF08007 Cupin superfamily protein PJW04_07695 PF00206 Lyase PJW04_07695 PF08328 Adenylosuccinate lyase C-terminal PJW04_07705 PF03471 Transporter associated domain PJW04_07705 PF01595 Cyclin M transmembrane N-terminal domain PJW04_07705 PF00571 CBS domain PJW04_07710 PF10415 Fumarase C C-terminus PJW04_07710 PF00206 Lyase PJW04_07735 PF00005 ABC transporter PJW04_07740 PF00392 Bacterial regulatory proteins, gntR family PJW04_07750 PF00255 Glutathione peroxidase PJW04_07760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJW04_07760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PJW04_07765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PJW04_07765 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PJW04_07765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PJW04_07770 PF04102 SlyX PJW04_07785 PF00356 Bacterial regulatory proteins, lacI family PJW04_07790 PF07690 Major Facilitator Superfamily PJW04_07795 PF00294 pfkB family carbohydrate kinase PJW04_07805 PF02607 B12 binding domain PJW04_07805 PF02310 B12 binding domain PJW04_07805 PF02965 Vitamin B12 dependent methionine synthase, activation domain PJW04_07805 PF00809 Pterin binding enzyme PJW04_07805 PF02574 Homocysteine S-methyltransferase PJW04_07810 PF02574 Homocysteine S-methyltransferase PJW04_07810 PF00809 Pterin binding enzyme PJW04_07815 PF01209 ubiE/COQ5 methyltransferase family PJW04_07840 PF00773 RNB domain PJW04_07840 PF00575 S1 RNA binding domain PJW04_07840 PF08461 Ribonuclease R winged-helix domain PJW04_07840 PF17876 Cold shock domain PJW04_07840 PF08206 Ribonuclease B OB domain PJW04_07850 PF00588 SpoU rRNA Methylase family PJW04_07850 PF08032 RNA 2'-O ribose methyltransferase substrate binding PJW04_07855 PF00990 Diguanylate cyclase, GGDEF domain PJW04_07860 PF00929 Exonuclease PJW04_07870 PF01895 PhoU domain PJW04_07875 PF00005 ABC transporter PJW04_07880 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_07885 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_07890 PF12849 PBP superfamily domain PJW04_07895 PF12849 PBP superfamily domain PJW04_07910 PF00484 Carbonic anhydrase PJW04_07915 PF01740 STAS domain PJW04_07915 PF00916 Sulfate permease family PJW04_07920 PF10576 Iron-sulfur binding domain of endonuclease III PJW04_07920 PF00633 Helix-hairpin-helix motif PJW04_07920 PF00730 HhH-GPD superfamily base excision DNA repair protein PJW04_07930 PF00378 Enoyl-CoA hydratase/isomerase PJW04_07935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase PJW04_07935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJW04_07940 PF00293 NUDIX domain PJW04_07945 PF00581 Rhodanese-like domain PJW04_07985 PF10672 S-adenosylmethionine-dependent methyltransferase PJW04_07985 PF02926 THUMP domain PJW04_07985 PF01170 Putative RNA methylase family UPF0020 PJW04_07990 PF01513 ATP-NAD kinase PJW04_08005 PF00248 Aldo/keto reductase family PJW04_08015 PF08411 Exonuclease C-terminal PJW04_08015 PF00929 Exonuclease PJW04_08025 PF01494 FAD binding domain PJW04_08030 PF00266 Aminotransferase class-V PJW04_08040 PF06052 3-hydroxyanthranilic acid dioxygenase PJW04_08045 PF00484 Carbonic anhydrase PJW04_08090 PF00072 Response regulator receiver domain PJW04_08090 PF00196 Bacterial regulatory proteins, luxR family PJW04_08115 PF00152 tRNA synthetases class II (D, K and N) PJW04_08115 PF01336 OB-fold nucleic acid binding domain PJW04_08120 PF01521 Iron-sulphur cluster biosynthesis PJW04_08125 PF01250 Ribosomal protein S6 PJW04_08130 PF01084 Ribosomal protein S18 PJW04_08135 PF03948 Ribosomal protein L9, C-terminal domain PJW04_08135 PF01281 Ribosomal protein L9, N-terminal domain PJW04_08140 PF02463 RecF/RecN/SMC N terminal domain PJW04_08145 PF04354 ZipA, C-terminal FtsZ-binding domain PJW04_08155 PF00155 Aminotransferase class I and II PJW04_08160 PF12826 Helix-hairpin-helix motif PJW04_08160 PF03120 NAD-dependent DNA ligase OB-fold domain PJW04_08160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain PJW04_08160 PF01653 NAD-dependent DNA ligase adenylation domain PJW04_08160 PF00533 BRCA1 C Terminus (BRCT) domain PJW04_08165 PF00152 tRNA synthetases class II (D, K and N) PJW04_08180 PF01008 Initiation factor 2 subunit family PJW04_08185 PF03989 DNA gyrase C-terminal domain, beta-propeller PJW04_08185 PF00521 DNA gyrase/topoisomerase IV, subunit A PJW04_08190 PF13360 PQQ-like domain PJW04_08200 PF17391 Urocanase N-terminal domain PJW04_08200 PF17392 Urocanase C-terminal domain PJW04_08200 PF01175 Urocanase Rossmann-like domain PJW04_08210 PF00221 Aromatic amino acid lyase PJW04_08215 PF07969 Amidohydrolase family PJW04_08230 PF00392 Bacterial regulatory proteins, gntR family PJW04_08230 PF07702 UTRA domain PJW04_08255 PF01794 Ferric reductase like transmembrane component PJW04_08260 PF00174 Oxidoreductase molybdopterin binding domain PJW04_08265 PF00266 Aminotransferase class-V PJW04_08270 PF01842 ACT domain PJW04_08270 PF01817 Chorismate mutase type II PJW04_08270 PF00800 Prephenate dehydratase PJW04_08275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PJW04_08285 PF03544 Gram-negative bacterial TonB protein C-terminal PJW04_08290 PF02403 Seryl-tRNA synthetase N-terminal domain PJW04_08290 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJW04_08295 PF02525 Flavodoxin-like fold PJW04_08300 PF03466 LysR substrate binding domain PJW04_08300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_08315 PF00672 HAMP domain PJW04_08315 PF02203 Tar ligand binding domain homologue PJW04_08315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_08320 PF01494 FAD binding domain PJW04_08335 PF00072 Response regulator receiver domain PJW04_08335 PF13188 PAS domain PJW04_08335 PF08448 PAS fold PJW04_08335 PF00512 His Kinase A (phospho-acceptor) domain PJW04_08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_08340 PF00512 His Kinase A (phospho-acceptor) domain PJW04_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_08340 PF00072 Response regulator receiver domain PJW04_08340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PJW04_08340 PF00672 HAMP domain PJW04_08340 PF01627 Hpt domain PJW04_08350 PF06745 KaiC PJW04_08355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_08355 PF00072 Response regulator receiver domain PJW04_08355 PF13426 PAS domain PJW04_08365 PF03918 Cytochrome C biogenesis protein PJW04_08370 PF08534 Redoxin PJW04_08375 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PJW04_08375 PF01578 Cytochrome C assembly protein PJW04_08380 PF03100 CcmE PJW04_08385 PF04995 Heme exporter protein D (CcmD) PJW04_08390 PF01578 Cytochrome C assembly protein PJW04_08395 PF00082 Subtilase family PJW04_08405 PF08281 Sigma-70, region 4 PJW04_08405 PF04542 Sigma-70 region 2 PJW04_08415 PF00034 Cytochrome c PJW04_08430 PF05523 WxcM-like, C-terminal PJW04_08450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PJW04_08455 PF01943 Polysaccharide biosynthesis protein PJW04_08460 PF01501 Glycosyl transferase family 8 PJW04_08460 PF00535 Glycosyl transferase family 2 PJW04_08475 PF08241 Methyltransferase domain PJW04_08495 PF13579 Glycosyl transferase 4-like domain PJW04_08495 PF00534 Glycosyl transferases group 1 PJW04_08515 PF00005 ABC transporter PJW04_08520 PF00664 ABC transporter transmembrane region PJW04_08520 PF00005 ABC transporter PJW04_08525 PF00083 Sugar (and other) transporter PJW04_08530 PF00296 Luciferase-like monooxygenase PJW04_08545 PF00571 CBS domain PJW04_08545 PF03471 Transporter associated domain PJW04_08545 PF01595 Cyclin M transmembrane N-terminal domain PJW04_08555 PF01384 Phosphate transporter family PJW04_08570 PF00204 DNA gyrase B PJW04_08570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_08570 PF01751 Toprim domain PJW04_08570 PF00986 DNA gyrase B subunit, carboxyl terminus PJW04_08580 PF00117 Glutamine amidotransferase class-I PJW04_08580 PF06418 CTP synthase N-terminus PJW04_08585 PF00793 DAHP synthetase I family PJW04_08595 PF03952 Enolase, N-terminal domain PJW04_08595 PF00113 Enolase, C-terminal TIM barrel domain PJW04_08600 PF04977 Septum formation initiator PJW04_08605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PJW04_08610 PF02542 YgbB family PJW04_08615 PF01142 tRNA pseudouridine synthase D (TruD) PJW04_08620 PF01713 Smr domain PJW04_08625 PF01975 Survival protein SurE PJW04_08635 PF09335 SNARE associated Golgi protein PJW04_08640 PF01551 Peptidase family M23 PJW04_08640 PF01476 LysM domain PJW04_08645 PF04430 Protein of unknown function (DUF498/DUF598) PJW04_08650 PF01985 CRS1 / YhbY (CRM) domain PJW04_08655 PF01728 FtsJ-like methyltransferase PJW04_08660 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_08660 PF17862 AAA+ lid domain PJW04_08660 PF06480 FtsH Extracellular PJW04_08660 PF01434 Peptidase family M41 PJW04_08665 PF00809 Pterin binding enzyme PJW04_08675 PF17209 Hfq protein PJW04_08680 PF01926 50S ribosome-binding GTPase PJW04_08680 PF13167 GTP-binding GTPase N-terminal PJW04_08680 PF16360 GTP-binding GTPase Middle Region PJW04_08685 PF02464 Competence-damaged protein PJW04_08690 PF03109 ABC1 family PJW04_08695 PF01726 LexA DNA binding domain PJW04_08695 PF00717 Peptidase S24-like PJW04_08700 PF00154 recA bacterial DNA recombination protein PJW04_08710 PF02631 RecX family PJW04_08715 PF01411 tRNA synthetases class II (A) PJW04_08715 PF02272 DHHA1 domain PJW04_08715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PJW04_08720 PF02599 Global regulator protein family PJW04_08750 PF04381 Putative exonuclease, RdgC PJW04_08915 PF00182 Chitinase class I PJW04_08965 PF00574 Clp protease PJW04_09070 PF13356 Arm DNA-binding domain PJW04_09070 PF14659 Phage integrase, N-terminal SAM-like domain PJW04_09070 PF00589 Phage integrase family PJW04_09075 PF13426 PAS domain PJW04_09075 PF08447 PAS fold PJW04_09075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09080 PF17954 Quercetinase C-terminal cupin domain PJW04_09080 PF02678 Pirin PJW04_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_09085 PF03466 LysR substrate binding domain PJW04_09110 PF08543 Phosphomethylpyrimidine kinase PJW04_09125 PF13638 PIN domain PJW04_09125 PF02562 PhoH-like protein PJW04_09130 PF00578 AhpC/TSA family PJW04_09145 PF00701 Dihydrodipicolinate synthetase family PJW04_09155 PF11953 Domain of unknown function (DUF3470) PJW04_09155 PF00037 4Fe-4S binding domain PJW04_09160 PF05035 2-keto-3-deoxy-galactonokinase PJW04_09165 PF08450 SMP-30/Gluconolactonase/LRE-like region PJW04_09170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PJW04_09170 PF13378 Enolase C-terminal domain-like PJW04_09175 PF01081 KDPG and KHG aldolase PJW04_09180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_09180 PF03466 LysR substrate binding domain PJW04_09195 PF00942 Cellulose binding domain PJW04_09195 PF03442 Carbohydrate binding domain X2 PJW04_09210 PF16338 Domain of unknown function (DUF4968) PJW04_09210 PF17137 Domain of unknown function (DUF5110) PJW04_09210 PF01055 Glycosyl hydrolases family 31 PJW04_09220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PJW04_09220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PJW04_09230 PF00083 Sugar (and other) transporter PJW04_09245 PF01520 N-acetylmuramoyl-L-alanine amidase PJW04_09250 PF02649 Type I GTP cyclohydrolase folE2 PJW04_09260 PF12627 Probable RNA and SrmB- binding site of polymerase A PJW04_09260 PF12626 Polymerase A arginine-rich C-terminus PJW04_09260 PF01743 Poly A polymerase head domain PJW04_09265 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PJW04_09270 PF02548 Ketopantoate hydroxymethyltransferase PJW04_09275 PF02569 Pantoate-beta-alanine ligase PJW04_09280 PF02261 Aspartate decarboxylase PJW04_09285 PF00342 Phosphoglucose isomerase PJW04_09305 PF14310 Fibronectin type III-like domain PJW04_09305 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_09305 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJW04_09315 PF00474 Sodium:solute symporter family PJW04_09320 PF00563 EAL domain PJW04_09320 PF00360 Phytochrome region PJW04_09320 PF00990 Diguanylate cyclase, GGDEF domain PJW04_09320 PF01590 GAF domain PJW04_09325 PF00150 Cellulase (glycosyl hydrolase family 5) PJW04_09325 PF02013 Cellulose or protein binding domain PJW04_09330 PF00072 Response regulator receiver domain PJW04_09340 PF04551 GcpE protein PJW04_09345 PF01569 PAP2 superfamily PJW04_09350 PF07690 Major Facilitator Superfamily PJW04_09355 PF01177 Asp/Glu/Hydantoin racemase PJW04_09365 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PJW04_09365 PF01565 FAD binding domain PJW04_09370 PF01180 Dihydroorotate dehydrogenase PJW04_09385 PF00171 Aldehyde dehydrogenase family PJW04_09410 PF08479 POTRA domain, ShlB-type PJW04_09410 PF17287 POTRA domain PJW04_09410 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB PJW04_09415 PF05594 Haemagluttinin repeat PJW04_09415 PF13332 Hemagglutinin repeat PJW04_09415 PF05860 haemagglutination activity domain PJW04_09415 PF15526 Novel toxin 21 PJW04_09415 PF04829 Pre-toxin domain with VENN motif PJW04_09450 PF03073 TspO/MBR family PJW04_09455 PF03447 Homoserine dehydrogenase, NAD binding domain PJW04_09455 PF00742 Homoserine dehydrogenase PJW04_09455 PF00696 Amino acid kinase family PJW04_09455 PF13840 ACT domain PJW04_09455 PF01842 ACT domain PJW04_09460 PF08544 GHMP kinases C terminal PJW04_09460 PF00288 GHMP kinases N terminal domain PJW04_09470 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_09470 PF14821 Threonine synthase N terminus PJW04_09480 PF00027 Cyclic nucleotide-binding domain PJW04_09480 PF13545 Crp-like helix-turn-helix domain PJW04_09485 PF03129 Anticodon binding domain PJW04_09485 PF13393 Histidyl-tRNA synthetase PJW04_09495 PF01634 ATP phosphoribosyltransferase PJW04_09495 PF08029 HisG, C-terminal domain PJW04_09500 PF00815 Histidinol dehydrogenase PJW04_09505 PF00155 Aminotransferase class I and II PJW04_09510 PF00475 Imidazoleglycerol-phosphate dehydratase PJW04_09515 PF00117 Glutamine amidotransferase class-I PJW04_09520 PF00977 Histidine biosynthesis protein PJW04_09525 PF00977 Histidine biosynthesis protein PJW04_09530 PF01502 Phosphoribosyl-AMP cyclohydrolase PJW04_09530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PJW04_09550 PF03079 ARD/ARD' family PJW04_09555 PF00596 Class II Aldolase and Adducin N-terminal domain PJW04_09560 PF13520 Amino acid permease PJW04_09565 PF13520 Amino acid permease PJW04_09575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PJW04_09575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PJW04_09580 PF02913 FAD linked oxidases, C-terminal domain PJW04_09580 PF01565 FAD binding domain PJW04_09600 PF01132 Elongation factor P (EF-P) OB domain PJW04_09600 PF08207 Elongation factor P (EF-P) KOW-like domain PJW04_09600 PF09285 Elongation factor P, C-terminal PJW04_09605 PF00106 short chain dehydrogenase PJW04_09610 PF00682 HMGL-like PJW04_09620 PF00378 Enoyl-CoA hydratase/isomerase PJW04_09630 PF07670 Nucleoside recognition PJW04_09630 PF02421 Ferrous iron transport protein B PJW04_09630 PF07664 Ferrous iron transport protein B C terminus PJW04_09645 PF00155 Aminotransferase class I and II PJW04_09650 PF03473 MOSC domain PJW04_09650 PF03475 3-alpha domain PJW04_09655 PF01113 Dihydrodipicolinate reductase, N-terminus PJW04_09655 PF05173 Dihydrodipicolinate reductase, C-terminus PJW04_09660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PJW04_09660 PF00117 Glutamine amidotransferase class-I PJW04_09670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PJW04_09670 PF02142 MGS-like domain PJW04_09670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PJW04_09675 PF01272 Transcription elongation factor, GreA/GreB, C-term PJW04_09675 PF03449 Transcription elongation factor, N-terminal PJW04_09685 PF01368 DHH family PJW04_09685 PF02272 DHHA1 domain PJW04_09685 PF17768 RecJ OB domain PJW04_09695 PF04397 LytTr DNA-binding domain PJW04_09695 PF00072 Response regulator receiver domain PJW04_09705 PF00152 tRNA synthetases class II (D, K and N) PJW04_09705 PF01336 OB-fold nucleic acid binding domain PJW04_09710 PF00072 Response regulator receiver domain PJW04_09715 PF00072 Response regulator receiver domain PJW04_09715 PF00512 His Kinase A (phospho-acceptor) domain PJW04_09715 PF01627 Hpt domain PJW04_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_09720 PF00512 His Kinase A (phospho-acceptor) domain PJW04_09720 PF01627 Hpt domain PJW04_09720 PF00072 Response regulator receiver domain PJW04_09725 PF00378 Enoyl-CoA hydratase/isomerase PJW04_09730 PF00501 AMP-binding enzyme PJW04_09730 PF13193 AMP-binding enzyme C-terminal domain PJW04_09745 PF00330 Aconitase family (aconitate hydratase) PJW04_09745 PF00694 Aconitase C-terminal domain PJW04_09760 PF11791 Aconitate B N-terminal domain PJW04_09760 PF06434 Aconitate hydratase 2 N-terminus PJW04_09760 PF00330 Aconitase family (aconitate hydratase) PJW04_09765 PF00561 alpha/beta hydrolase fold PJW04_09770 PF00563 EAL domain PJW04_09770 PF00990 Diguanylate cyclase, GGDEF domain PJW04_09770 PF03707 Bacterial signalling protein N terminal repeat PJW04_09775 PF00072 Response regulator receiver domain PJW04_09775 PF01339 CheB methylesterase PJW04_09780 PF03975 CheD chemotactic sensory transduction PJW04_09785 PF03705 CheR methyltransferase, all-alpha domain PJW04_09785 PF01739 CheR methyltransferase, SAM binding domain PJW04_09790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09790 PF00672 HAMP domain PJW04_09790 PF02203 Tar ligand binding domain homologue PJW04_09800 PF01584 CheW-like domain PJW04_09805 PF07238 PilZ domain PJW04_09805 PF07317 Flagellar regulator YcgR PJW04_09810 PF00672 HAMP domain PJW04_09810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09810 PF02203 Tar ligand binding domain homologue PJW04_09815 PF00672 HAMP domain PJW04_09815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09815 PF02203 Tar ligand binding domain homologue PJW04_09820 PF02203 Tar ligand binding domain homologue PJW04_09820 PF00672 HAMP domain PJW04_09820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09825 PF00672 HAMP domain PJW04_09825 PF02203 Tar ligand binding domain homologue PJW04_09825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09830 PF02203 Tar ligand binding domain homologue PJW04_09830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09830 PF00672 HAMP domain PJW04_09840 PF00672 HAMP domain PJW04_09840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09840 PF02203 Tar ligand binding domain homologue PJW04_09845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09845 PF02203 Tar ligand binding domain homologue PJW04_09845 PF00672 HAMP domain PJW04_09850 PF02203 Tar ligand binding domain homologue PJW04_09850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09850 PF00672 HAMP domain PJW04_09855 PF00672 HAMP domain PJW04_09855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09855 PF02203 Tar ligand binding domain homologue PJW04_09865 PF00672 HAMP domain PJW04_09865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09865 PF02203 Tar ligand binding domain homologue PJW04_09870 PF08269 Cache domain PJW04_09870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09880 PF00672 HAMP domain PJW04_09880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_09890 PF01627 Hpt domain PJW04_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_09890 PF01584 CheW-like domain PJW04_09890 PF02895 Signal transducing histidine kinase, homodimeric domain PJW04_09890 PF09078 CheY binding PJW04_09895 PF00072 Response regulator receiver domain PJW04_09905 PF01584 CheW-like domain PJW04_09910 PF13614 AAA domain PJW04_09915 PF13677 Membrane MotB of proton-channel complex MotA/MotB PJW04_09915 PF00691 OmpA family PJW04_09920 PF01618 MotA/TolQ/ExbB proton channel family PJW04_09995 PF01584 CheW-like domain PJW04_09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_09995 PF02895 Signal transducing histidine kinase, homodimeric domain PJW04_09995 PF00072 Response regulator receiver domain PJW04_09995 PF01627 Hpt domain PJW04_10000 PF04344 Chemotaxis phosphatase, CheZ PJW04_10005 PF00072 Response regulator receiver domain PJW04_10010 PF04542 Sigma-70 region 2 PJW04_10010 PF04539 Sigma-70 region 3 PJW04_10010 PF04545 Sigma-70, region 4 PJW04_10015 PF10609 NUBPL iron-transfer P-loop NTPase PJW04_10020 PF00448 SRP54-type protein, GTPase domain PJW04_10025 PF00771 FHIPEP family PJW04_10030 PF01312 FlhB HrpN YscU SpaS Family PJW04_10035 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10035 PF00563 EAL domain PJW04_10035 PF03707 Bacterial signalling protein N terminal repeat PJW04_10040 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10045 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10050 PF01311 Bacterial export proteins, family 1 PJW04_10055 PF01313 Bacterial export proteins, family 3 PJW04_10065 PF00813 FliP family PJW04_10070 PF04347 Flagellar biosynthesis protein, FliO PJW04_10075 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PJW04_10080 PF02154 Flagellar motor switch protein FliM PJW04_10080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PJW04_10100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJW04_10100 PF18269 T3SS EscN ATPase C-terminal domain PJW04_10110 PF01706 FliG C-terminal domain PJW04_10110 PF14841 FliG middle domain PJW04_10110 PF14842 FliG N-terminal domain PJW04_10115 PF08345 Flagellar M-ring protein C-terminal PJW04_10115 PF01514 Secretory protein of YscJ/FliF family PJW04_10120 PF02049 Flagellar hook-basal body complex protein FliE PJW04_10125 PF00534 Glycosyl transferases group 1 PJW04_10125 PF00535 Glycosyl transferase family 2 PJW04_10130 PF04230 Polysaccharide pyruvyl transferase PJW04_10165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJW04_10165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJW04_10175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family PJW04_10180 PF00158 Sigma-54 interaction domain PJW04_10180 PF06490 Flagellar regulatory protein FleQ PJW04_10180 PF02954 Bacterial regulatory protein, Fis family PJW04_10185 PF00072 Response regulator receiver domain PJW04_10185 PF01339 CheB methylesterase PJW04_10190 PF00309 Sigma-54 factor, Activator interacting domain (AID) PJW04_10190 PF04963 Sigma-54 factor, core binding domain PJW04_10190 PF04552 Sigma-54, DNA binding domain PJW04_10195 PF00196 Bacterial regulatory proteins, luxR family PJW04_10195 PF00072 Response regulator receiver domain PJW04_10210 PF02561 Flagellar protein FliS PJW04_10215 PF07196 Flagellin hook IN motif PJW04_10215 PF07195 Flagellar hook-associated protein 2 C-terminus PJW04_10215 PF02465 Flagellar hook-associated protein 2 N-terminus PJW04_10220 PF00700 Bacterial flagellin C-terminal helical region PJW04_10220 PF00669 Bacterial flagellin N-terminal helical region PJW04_10230 PF00700 Bacterial flagellin C-terminal helical region PJW04_10230 PF00669 Bacterial flagellin N-terminal helical region PJW04_10235 PF07196 Flagellin hook IN motif PJW04_10235 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PJW04_10240 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase PJW04_10240 PF10135 Rod binding protein PJW04_10245 PF02119 Flagellar P-ring protein PJW04_10250 PF02107 Flagellar L-ring protein PJW04_10255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PJW04_10255 PF00460 Flagella basal body rod protein PJW04_10265 PF00460 Flagella basal body rod protein PJW04_10265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PJW04_10270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PJW04_10270 PF00460 Flagella basal body rod protein PJW04_10270 PF07559 Flagellar basal body protein FlaE PJW04_10275 PF03963 Flagellar hook capping protein - N-terminal region PJW04_10280 PF00460 Flagella basal body rod protein PJW04_10280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal PJW04_10290 PF00072 Response regulator receiver domain PJW04_10290 PF01584 CheW-like domain PJW04_10310 PF13426 PAS domain PJW04_10310 PF00989 PAS fold PJW04_10310 PF00512 His Kinase A (phospho-acceptor) domain PJW04_10310 PF13188 PAS domain PJW04_10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10315 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10315 PF00563 EAL domain PJW04_10315 PF03707 Bacterial signalling protein N terminal repeat PJW04_10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10320 PF07730 Histidine kinase PJW04_10325 PF03707 Bacterial signalling protein N terminal repeat PJW04_10325 PF00563 EAL domain PJW04_10325 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10340 PF00672 HAMP domain PJW04_10340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_10340 PF12729 Four helix bundle sensory module for signal transduction PJW04_10345 PF04356 Protein of unknown function (DUF489) PJW04_10355 PF00293 NUDIX domain PJW04_10360 PF02617 ATP-dependent Clp protease adaptor protein ClpS PJW04_10365 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_10365 PF02861 Clp amino terminal domain, pathogenicity island component PJW04_10365 PF07724 AAA domain (Cdc48 subfamily) PJW04_10365 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_10365 PF17871 AAA lid domain PJW04_10370 PF01176 Translation initiation factor 1A / IF-1 PJW04_10375 PF03588 Leucyl/phenylalanyl-tRNA protein transferase PJW04_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_10395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE PJW04_10395 PF17854 FtsK alpha domain PJW04_10395 PF09397 Ftsk gamma domain PJW04_10395 PF01580 FtsK/SpoIIIE family PJW04_10405 PF03548 Outer membrane lipoprotein carrier protein LolA PJW04_10420 PF16193 AAA C-terminal domain PJW04_10420 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_10420 PF12002 MgsA AAA+ ATPase C terminal PJW04_10425 PF02537 CrcB-like protein, Camphor Resistance (CrcB) PJW04_10430 PF02803 Thiolase, C-terminal domain PJW04_10430 PF00108 Thiolase, N-terminal domain PJW04_10435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PJW04_10435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PJW04_10435 PF00378 Enoyl-CoA hydratase/isomerase PJW04_10445 PF00334 Nucleoside diphosphate kinase PJW04_10450 PF04055 Radical SAM superfamily PJW04_10460 PF13464 Domain of unknown function (DUF4115) PJW04_10470 PF01011 PQQ enzyme repeat PJW04_10470 PF13360 PQQ-like domain PJW04_10475 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PJW04_10475 PF01926 50S ribosome-binding GTPase PJW04_10480 PF00994 Probable molybdopterin binding domain PJW04_10480 PF03454 MoeA C-terminal region (domain IV) PJW04_10480 PF03453 MoeA N-terminal region (domain I and II) PJW04_10485 PF00899 ThiF family PJW04_10515 PF00107 Zinc-binding dehydrogenase PJW04_10515 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_10515 PF13823 Alcohol dehydrogenase GroES-associated PJW04_10525 PF03372 Endonuclease/Exonuclease/phosphatase family PJW04_10535 PF00994 Probable molybdopterin binding domain PJW04_10535 PF03454 MoeA C-terminal region (domain IV) PJW04_10535 PF03453 MoeA N-terminal region (domain I and II) PJW04_10540 PF12804 MobA-like NTP transferase domain PJW04_10565 PF10414 Sirohaem synthase dimerisation region PJW04_10565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJW04_10565 PF14824 Sirohaem biosynthesis protein central PJW04_10570 PF03861 ANTAR domain PJW04_10570 PF00072 Response regulator receiver domain PJW04_10580 PF07690 Major Facilitator Superfamily PJW04_10585 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_10585 PF18267 Rubredoxin NAD+ reductase C-terminal domain PJW04_10585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PJW04_10585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PJW04_10585 PF04324 BFD-like [2Fe-2S] binding domain PJW04_10590 PF11723 Homotrimeric ring hydroxylase PJW04_10590 PF00355 Rieske [2Fe-2S] domain PJW04_10595 PF01568 Molydopterin dinucleotide binding domain PJW04_10595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain PJW04_10595 PF04324 BFD-like [2Fe-2S] binding domain PJW04_10595 PF00384 Molybdopterin oxidoreductase PJW04_10600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJW04_10610 PF05974 Domain of unknown function (DUF892) PJW04_10625 PF00563 EAL domain PJW04_10625 PF00990 Diguanylate cyclase, GGDEF domain PJW04_10625 PF08447 PAS fold PJW04_10625 PF08448 PAS fold PJW04_10635 PF12951 Passenger-associated-transport-repeat PJW04_10640 PF00196 Bacterial regulatory proteins, luxR family PJW04_10640 PF00072 Response regulator receiver domain PJW04_10645 PF00072 Response regulator receiver domain PJW04_10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10645 PF00512 His Kinase A (phospho-acceptor) domain PJW04_10645 PF08448 PAS fold PJW04_10645 PF13426 PAS domain PJW04_10650 PF02321 Outer membrane efflux protein PJW04_10655 PF00873 AcrB/AcrD/AcrF family PJW04_10660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_10665 PF03797 Autotransporter beta-domain PJW04_10665 PF00082 Subtilase family PJW04_10675 PF07694 5TMR of 5TMR-LYT PJW04_10675 PF13492 GAF domain PJW04_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10675 PF06580 Histidine kinase PJW04_10680 PF04397 LytTr DNA-binding domain PJW04_10680 PF00072 Response regulator receiver domain PJW04_10685 PF00144 Beta-lactamase PJW04_10695 PF07995 Glucose / Sorbosone dehydrogenase PJW04_10700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PJW04_10720 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PJW04_10725 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PJW04_10730 PF05638 Type VI secretion system effector, Hcp PJW04_10735 PF07024 ImpE protein PJW04_10740 PF04965 Gene 25-like lysozyme PJW04_10745 PF05947 Type VI secretion system, TssF PJW04_10755 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_10755 PF07724 AAA domain (Cdc48 subfamily) PJW04_10755 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_10755 PF17871 AAA lid domain PJW04_10785 PF06715 Gp5 C-terminal repeat (3 copies) PJW04_10785 PF04717 Type VI secretion system, phage-baseplate injector PJW04_10800 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PJW04_10810 PF06761 Intracellular multiplication and human macrophage-killing PJW04_10810 PF14331 ImcF-related N-terminal domain PJW04_10810 PF06744 Type VI secretion protein IcmF C-terminal PJW04_10825 PF00069 Protein kinase domain PJW04_10840 PF06812 ImpA, N-terminal, type VI secretion system PJW04_10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_10845 PF03466 LysR substrate binding domain PJW04_10850 PF00512 His Kinase A (phospho-acceptor) domain PJW04_10850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10855 PF03150 Di-haem cytochrome c peroxidase PJW04_10855 PF00034 Cytochrome c PJW04_10860 PF00072 Response regulator receiver domain PJW04_10860 PF00486 Transcriptional regulatory protein, C terminal PJW04_10870 PF05199 GMC oxidoreductase PJW04_10870 PF00732 GMC oxidoreductase PJW04_10875 PF00067 Cytochrome P450 PJW04_10880 PF00196 Bacterial regulatory proteins, luxR family PJW04_10880 PF00072 Response regulator receiver domain PJW04_10885 PF07730 Histidine kinase PJW04_10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10890 PF00072 Response regulator receiver domain PJW04_10890 PF00196 Bacterial regulatory proteins, luxR family PJW04_10900 PF07730 Histidine kinase PJW04_10900 PF13185 GAF domain PJW04_10900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_10900 PF13492 GAF domain PJW04_10905 PF01526 Tn3 transposase DDE domain PJW04_10905 PF13700 Domain of unknown function (DUF4158) PJW04_10915 PF13411 MerR HTH family regulatory protein PJW04_10935 PF00529 HlyD membrane-fusion protein of T1SS PJW04_10935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_10940 PF00873 AcrB/AcrD/AcrF family PJW04_10955 PF13175 AAA ATPase domain PJW04_10980 PF00394 Multicopper oxidase PJW04_10980 PF07732 Multicopper oxidase PJW04_10980 PF07731 Multicopper oxidase PJW04_10985 PF05275 Copper resistance protein B precursor (CopB) PJW04_11000 PF04945 YHS domain PJW04_11015 PF00491 Arginase family PJW04_11020 PF00221 Aromatic amino acid lyase PJW04_11025 PF17392 Urocanase C-terminal domain PJW04_11025 PF01175 Urocanase Rossmann-like domain PJW04_11025 PF17391 Urocanase N-terminal domain PJW04_11030 PF00392 Bacterial regulatory proteins, gntR family PJW04_11030 PF07702 UTRA domain PJW04_11040 PF00593 TonB dependent receptor PJW04_11040 PF07715 TonB-dependent Receptor Plug Domain PJW04_11050 PF00970 Oxidoreductase FAD-binding domain PJW04_11050 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_11050 PF00175 Oxidoreductase NAD-binding domain PJW04_11065 PF00593 TonB dependent receptor PJW04_11065 PF07715 TonB-dependent Receptor Plug Domain PJW04_11075 PF00873 AcrB/AcrD/AcrF family PJW04_11100 PF00403 Heavy-metal-associated domain PJW04_11105 PF00403 Heavy-metal-associated domain PJW04_11110 PF09278 MerR, DNA binding PJW04_11110 PF00376 MerR family regulatory protein PJW04_11120 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_11120 PF00107 Zinc-binding dehydrogenase PJW04_11190 PF02303 Helix-destabilising protein PJW04_11230 PF07859 alpha/beta hydrolase fold PJW04_11240 PF00753 Metallo-beta-lactamase superfamily PJW04_11245 PF04143 Sulphur transport PJW04_11260 PF01925 Sulfite exporter TauE/SafE PJW04_11265 PF00106 short chain dehydrogenase PJW04_11275 PF12697 Alpha/beta hydrolase family PJW04_11275 PF08241 Methyltransferase domain PJW04_11290 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PJW04_11290 PF02585 GlcNAc-PI de-N-acetylase PJW04_11320 PF06441 Epoxide hydrolase N terminus PJW04_11330 PF18665 Tetracyclin repressor-like, C-terminal domain PJW04_11330 PF00440 Bacterial regulatory proteins, tetR family PJW04_11335 PF00873 AcrB/AcrD/AcrF family PJW04_11340 PF00529 HlyD membrane-fusion protein of T1SS PJW04_11340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_11355 PF01106 NifU-like domain PJW04_11360 PF01329 Pterin 4 alpha carbinolamine dehydratase PJW04_11370 PF02535 ZIP Zinc transporter PJW04_11375 PF11737 Protein of unknown function (DUF3300) PJW04_11380 PF00849 RNA pseudouridylate synthase PJW04_11380 PF01479 S4 domain PJW04_11385 PF12111 Polyribonucleotide phosphorylase C terminal PJW04_11385 PF10150 Ribonuclease E/G family PJW04_11385 PF00575 S1 RNA binding domain PJW04_11390 PF00196 Bacterial regulatory proteins, luxR family PJW04_11390 PF00072 Response regulator receiver domain PJW04_11395 PF17773 UPF0176 acylphosphatase like domain PJW04_11395 PF00581 Rhodanese-like domain PJW04_11405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJW04_11415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PJW04_11415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PJW04_11415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PJW04_11425 PF00589 Phage integrase family PJW04_11500 PF01066 CDP-alcohol phosphatidyltransferase PJW04_11505 PF01541 GIY-YIG catalytic domain PJW04_11505 PF02151 UvrB/uvrC motif PJW04_11505 PF08459 UvrC Helix-hairpin-helix N-terminal PJW04_11515 PF01451 Low molecular weight phosphotyrosine protein phosphatase PJW04_11520 PF02348 Cytidylyltransferase PJW04_11525 PF02606 Tetraacyldisaccharide-1-P 4'-kinase PJW04_11530 PF00664 ABC transporter transmembrane region PJW04_11530 PF00005 ABC transporter PJW04_11540 PF01618 MotA/TolQ/ExbB proton channel family PJW04_11545 PF03772 Competence protein PJW04_11545 PF00753 Metallo-beta-lactamase superfamily PJW04_11555 PF00005 ABC transporter PJW04_11560 PF12704 MacB-like periplasmic core domain PJW04_11560 PF02687 FtsX-like permease family PJW04_11570 PF03937 Flavinator of succinate dehydrogenase PJW04_11575 PF13085 2Fe-2S iron-sulfur cluster binding domain PJW04_11585 PF02910 Fumarate reductase flavoprotein C-term PJW04_11585 PF00890 FAD binding domain PJW04_11590 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PJW04_11595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PJW04_11605 PF01571 Aminomethyltransferase folate-binding domain PJW04_11610 PF00005 ABC transporter PJW04_11610 PF17912 MalK OB fold domain PJW04_11615 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PJW04_11615 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PJW04_11620 PF02685 Glucokinase PJW04_11625 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PJW04_11630 PF00920 Dehydratase family PJW04_11635 PF01081 KDPG and KHG aldolase PJW04_11640 PF00873 AcrB/AcrD/AcrF family PJW04_11645 PF00873 AcrB/AcrD/AcrF family PJW04_11650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_11660 PF00034 Cytochrome c PJW04_11700 PF00072 Response regulator receiver domain PJW04_11700 PF09308 LuxQ, periplasmic PJW04_11700 PF00512 His Kinase A (phospho-acceptor) domain PJW04_11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_11705 PF00575 S1 RNA binding domain PJW04_11705 PF09371 Tex-like protein N-terminal domain PJW04_11705 PF17674 HHH domain PJW04_11705 PF16921 Tex protein YqgF-like domain PJW04_11715 PF01266 FAD dependent oxidoreductase PJW04_11715 PF00355 Rieske [2Fe-2S] domain PJW04_11730 PF00561 alpha/beta hydrolase fold PJW04_11740 PF01066 CDP-alcohol phosphatidyltransferase PJW04_11760 PF03618 Kinase/pyrophosphorylase PJW04_11765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PJW04_11765 PF00391 PEP-utilising enzyme, mobile domain PJW04_11765 PF02896 PEP-utilising enzyme, TIM barrel domain PJW04_11770 PF00924 Mechanosensitive ion channel PJW04_11770 PF05552 Conserved TM helix PJW04_11775 PF00929 Exonuclease PJW04_11780 PF14437 MafB19-like deaminase PJW04_11785 PF02742 Iron dependent repressor, metal binding and dimerisation domain PJW04_11785 PF01325 Iron dependent repressor, N-terminal DNA binding domain PJW04_11790 PF01566 Natural resistance-associated macrophage protein PJW04_11795 PF00561 alpha/beta hydrolase fold PJW04_11810 PF05977 Transmembrane secretion effector PJW04_11815 PF07969 Amidohydrolase family PJW04_11825 PF00857 Isochorismatase family PJW04_11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_11835 PF07730 Histidine kinase PJW04_11840 PF00072 Response regulator receiver domain PJW04_11840 PF00196 Bacterial regulatory proteins, luxR family PJW04_11855 PF03466 LysR substrate binding domain PJW04_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_11860 PF03601 Conserved hypothetical protein 698 PJW04_11870 PF00067 Cytochrome P450 PJW04_11875 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_11880 PF14759 Reductase C-terminal PJW04_11880 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_11885 PF03466 LysR substrate binding domain PJW04_11890 PF00361 Proton-conducting membrane transporter PJW04_11890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PJW04_11890 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus PJW04_11895 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) PJW04_11900 PF00248 Aldo/keto reductase family PJW04_11905 PF00248 Aldo/keto reductase family PJW04_11910 PF03466 LysR substrate binding domain PJW04_11910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_11925 PF13673 Acetyltransferase (GNAT) domain PJW04_11925 PF00117 Glutamine amidotransferase class-I PJW04_11925 PF13302 Acetyltransferase (GNAT) domain PJW04_11925 PF00958 GMP synthase C terminal domain PJW04_11925 PF03352 Methyladenine glycosylase PJW04_11940 PF02796 Helix-turn-helix domain of resolvase PJW04_11940 PF00239 Resolvase, N terminal domain PJW04_11960 PF03167 Uracil DNA glycosylase superfamily PJW04_11965 PF03167 Uracil DNA glycosylase superfamily PJW04_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_11970 PF03466 LysR substrate binding domain PJW04_11980 PF13610 DDE domain PJW04_11995 PF13610 DDE domain PJW04_12015 PF01451 Low molecular weight phosphotyrosine protein phosphatase PJW04_12020 PF01758 Sodium Bile acid symporter family PJW04_12060 PF17273 Family of unknown function (DUF5338) PJW04_12090 PF13356 Arm DNA-binding domain PJW04_12090 PF00589 Phage integrase family PJW04_12095 PF00117 Glutamine amidotransferase class-I PJW04_12095 PF02540 NAD synthase PJW04_12095 PF00958 GMP synthase C terminal domain PJW04_12100 PF00571 CBS domain PJW04_12100 PF00478 IMP dehydrogenase / GMP reductase domain PJW04_12105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PJW04_12105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PJW04_12115 PF00999 Sodium/hydrogen exchanger family PJW04_12115 PF02254 TrkA-N domain PJW04_12120 PF00483 Nucleotidyl transferase PJW04_12125 PF02719 Polysaccharide biosynthesis protein PJW04_12130 PF00953 Glycosyl transferase family 4 PJW04_12135 PF18073 Rubredoxin metal binding domain PJW04_12145 PF00216 Bacterial DNA-binding protein PJW04_12150 PF00575 S1 RNA binding domain PJW04_12155 PF02224 Cytidylate kinase PJW04_12160 PF00444 Ribosomal protein L36 PJW04_12170 PF04371 Porphyromonas-type peptidyl-arginine deiminase PJW04_12175 PF00795 Carbon-nitrogen hydrolase PJW04_12200 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_12205 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_12225 PF00356 Bacterial regulatory proteins, lacI family PJW04_12235 PF03795 YCII-related domain PJW04_12240 PF02616 Segregation and condensation protein ScpA PJW04_12245 PF04079 Segregation and condensation complex subunit ScpB PJW04_12250 PF01479 S4 domain PJW04_12250 PF00849 RNA pseudouridylate synthase PJW04_12265 PF00795 Carbon-nitrogen hydrolase PJW04_12270 PF00155 Aminotransferase class I and II PJW04_12275 PF00005 ABC transporter PJW04_12280 PF03379 CcmB protein PJW04_12285 PF01578 Cytochrome C assembly protein PJW04_12295 PF03100 CcmE PJW04_12300 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal PJW04_12300 PF01578 Cytochrome C assembly protein PJW04_12305 PF08534 Redoxin PJW04_12310 PF03918 Cytochrome C biogenesis protein PJW04_12320 PF00561 alpha/beta hydrolase fold PJW04_12325 PF00313 'Cold-shock' DNA-binding domain PJW04_12330 PF00664 ABC transporter transmembrane region PJW04_12330 PF00005 ABC transporter PJW04_12335 PF00005 ABC transporter PJW04_12335 PF00664 ABC transporter transmembrane region PJW04_12340 PF01654 Cytochrome bd terminal oxidase subunit I PJW04_12345 PF02322 Cytochrome bd terminal oxidase subunit II PJW04_12365 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain PJW04_12365 PF02129 X-Pro dipeptidyl-peptidase (S15 family) PJW04_12375 PF00171 Aldehyde dehydrogenase family PJW04_12380 PF01472 PUA domain PJW04_12380 PF00696 Amino acid kinase family PJW04_12390 PF00206 Lyase PJW04_12395 PF01118 Semialdehyde dehydrogenase, NAD binding domain PJW04_12405 PF00696 Amino acid kinase family PJW04_12405 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase PJW04_12410 PF07687 Peptidase dimerisation domain PJW04_12410 PF01546 Peptidase family M20/M25/M40 PJW04_12420 PF00764 Arginosuccinate synthase PJW04_12425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PJW04_12425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PJW04_12435 PF01406 tRNA synthetases class I (C) catalytic domain PJW04_12435 PF09190 DALR domain PJW04_12440 PF02657 Fe-S metabolism associated domain PJW04_12450 PF01258 Prokaryotic dksA/traR C4-type zinc finger PJW04_12460 PF01809 Putative membrane protein insertion efficiency factor PJW04_12465 PF01979 Amidohydrolase family PJW04_12470 PF01551 Peptidase family M23 PJW04_12470 PF08460 Bacterial SH3 domain PJW04_12485 PF06751 Ethanolamine ammonia lyase large subunit (EutB) PJW04_12490 PF05985 Ethanolamine ammonia-lyase light chain (EutC) PJW04_12500 PF00753 Metallo-beta-lactamase superfamily PJW04_12510 PF01095 Pectinesterase PJW04_12520 PF13419 Haloacid dehalogenase-like hydrolase PJW04_12530 PF01979 Amidohydrolase family PJW04_12540 PF01132 Elongation factor P (EF-P) OB domain PJW04_12540 PF09285 Elongation factor P, C-terminal PJW04_12540 PF08207 Elongation factor P (EF-P) KOW-like domain PJW04_12545 PF04055 Radical SAM superfamily PJW04_12550 PF13188 PAS domain PJW04_12550 PF03707 Bacterial signalling protein N terminal repeat PJW04_12550 PF00990 Diguanylate cyclase, GGDEF domain PJW04_12550 PF00563 EAL domain PJW04_12560 PF00588 SpoU rRNA Methylase family PJW04_12565 PF00459 Inositol monophosphatase family PJW04_12570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PJW04_12570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PJW04_12575 PF00545 ribonuclease PJW04_12585 PF00005 ABC transporter PJW04_12585 PF16326 ABC transporter C-terminal domain PJW04_12585 PF12848 ABC transporter PJW04_12590 PF03880 DbpA RNA binding domain PJW04_12590 PF00271 Helicase conserved C-terminal domain PJW04_12590 PF00270 DEAD/DEAH box helicase PJW04_12595 PF00156 Phosphoribosyl transferase domain PJW04_12600 PF02696 Uncharacterized ACR, YdiU/UPF0061 family PJW04_12605 PF00135 Carboxylesterase family PJW04_12610 PF02798 Glutathione S-transferase, N-terminal domain PJW04_12610 PF14497 Glutathione S-transferase, C-terminal domain PJW04_12615 PF00313 'Cold-shock' DNA-binding domain PJW04_12620 PF07152 YaeQ protein PJW04_12630 PF00563 EAL domain PJW04_12630 PF00990 Diguanylate cyclase, GGDEF domain PJW04_12630 PF00072 Response regulator receiver domain PJW04_12635 PF01435 Peptidase family M48 PJW04_12640 PF00749 tRNA synthetases class I (E and Q), catalytic domain PJW04_12645 PF00106 short chain dehydrogenase PJW04_12650 PF05233 PHB accumulation regulatory domain PJW04_12650 PF07879 PHB/PHA accumulation regulator DNA-binding domain PJW04_12670 PF01119 DNA mismatch repair protein, C-terminal domain PJW04_12670 PF08676 MutL C terminal dimerisation domain PJW04_12675 PF11741 AMIN domain PJW04_12675 PF01520 N-acetylmuramoyl-L-alanine amidase PJW04_12680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PJW04_12685 PF01256 Carbohydrate kinase PJW04_12685 PF03853 YjeF-related protein N-terminus PJW04_12690 PF08331 Domain of unknown function (DUF1730) PJW04_12695 PF02601 Exonuclease VII, large subunit PJW04_12695 PF13742 OB-fold nucleic acid binding domain PJW04_12710 PF03781 Sulfatase-modifying factor enzyme 1 PJW04_12720 PF00570 HRDC domain PJW04_12720 PF01612 3'-5' exonuclease PJW04_12725 PF13298 DNA polymerase Ligase (LigD) PJW04_12725 PF01068 ATP dependent DNA ligase domain PJW04_12725 PF04679 ATP dependent DNA ligase C terminal region PJW04_12755 PF01584 CheW-like domain PJW04_12760 PF02743 Cache domain PJW04_12760 PF00672 HAMP domain PJW04_12760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_12765 PF02245 Methylpurine-DNA glycosylase (MPG) PJW04_12770 PF00270 DEAD/DEAH box helicase PJW04_12770 PF08494 DEAD/H associated PJW04_12770 PF00271 Helicase conserved C-terminal domain PJW04_12790 PF04386 Stringent starvation protein B PJW04_12795 PF00043 Glutathione S-transferase, C-terminal domain PJW04_12795 PF02798 Glutathione S-transferase, N-terminal domain PJW04_12800 PF02167 Cytochrome C1 family PJW04_12805 PF00032 Cytochrome b(C-terminal)/b6/petD PJW04_12805 PF00033 Cytochrome b/b6/petB PJW04_12810 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PJW04_12810 PF00355 Rieske [2Fe-2S] domain PJW04_12815 PF01464 Transglycosylase SLT domain PJW04_12830 PF00919 Uncharacterized protein family UPF0004 PJW04_12830 PF01938 TRAM domain PJW04_12830 PF04055 Radical SAM superfamily PJW04_12835 PF02562 PhoH-like protein PJW04_12845 PF02130 Uncharacterized protein family UPF0054 PJW04_12855 PF00571 CBS domain PJW04_12855 PF03471 Transporter associated domain PJW04_12870 PF00171 Aldehyde dehydrogenase family PJW04_12875 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_12880 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_12890 PF00005 ABC transporter PJW04_12890 PF08402 TOBE domain PJW04_12895 PF02321 Outer membrane efflux protein PJW04_12900 PF07690 Major Facilitator Superfamily PJW04_12905 PF13533 Biotin-lipoyl like PJW04_12910 PF13416 Bacterial extracellular solute-binding protein PJW04_12915 PF00202 Aminotransferase class-III PJW04_12920 PF00120 Glutamine synthetase, catalytic domain PJW04_12925 PF07722 Peptidase C26 PJW04_12930 PF00120 Glutamine synthetase, catalytic domain PJW04_12935 PF01266 FAD dependent oxidoreductase PJW04_12940 PF00990 Diguanylate cyclase, GGDEF domain PJW04_12940 PF00072 Response regulator receiver domain PJW04_12945 PF01814 Hemerythrin HHE cation binding domain PJW04_12950 PF00083 Sugar (and other) transporter PJW04_12950 PF07690 Major Facilitator Superfamily PJW04_12960 PF00384 Molybdopterin oxidoreductase PJW04_12965 PF02634 FdhD/NarQ family PJW04_12970 PF07690 Major Facilitator Superfamily PJW04_12975 PF00202 Aminotransferase class-III PJW04_12985 PF04286 Protein of unknown function (DUF445) PJW04_12990 PF01627 Hpt domain PJW04_12990 PF00072 Response regulator receiver domain PJW04_12990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) PJW04_12990 PF00672 HAMP domain PJW04_12990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_12990 PF00512 His Kinase A (phospho-acceptor) domain PJW04_12995 PF00072 Response regulator receiver domain PJW04_13000 PF07690 Major Facilitator Superfamily PJW04_13005 PF05088 Bacterial NAD-glutamate dehydrogenase PJW04_13015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_13015 PF00529 HlyD membrane-fusion protein of T1SS PJW04_13020 PF00873 AcrB/AcrD/AcrF family PJW04_13025 PF00356 Bacterial regulatory proteins, lacI family PJW04_13030 PF00391 PEP-utilising enzyme, mobile domain PJW04_13030 PF00381 PTS HPr component phosphorylation site PJW04_13030 PF05524 PEP-utilising enzyme, N-terminal PJW04_13030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PJW04_13030 PF02896 PEP-utilising enzyme, TIM barrel domain PJW04_13035 PF00294 pfkB family carbohydrate kinase PJW04_13040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PJW04_13100 PF07549 SecD/SecF GG Motif PJW04_13100 PF02355 Protein export membrane protein PJW04_13105 PF13721 SecD export protein N-terminal TM region PJW04_13105 PF07549 SecD/SecF GG Motif PJW04_13105 PF02355 Protein export membrane protein PJW04_13110 PF02699 Preprotein translocase subunit PJW04_13115 PF01702 Queuine tRNA-ribosyltransferase PJW04_13120 PF02547 Queuosine biosynthesis protein PJW04_13160 PF02927 Cellulase N-terminal ig-like domain PJW04_13160 PF00759 Glycosyl hydrolase family 9 PJW04_13170 PF00037 4Fe-4S binding domain PJW04_13185 PF01467 Cytidylyltransferase-like PJW04_13195 PF00183 Hsp90 protein PJW04_13195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_13215 PF00593 TonB dependent receptor PJW04_13215 PF07715 TonB-dependent Receptor Plug Domain PJW04_13225 PF04616 Glycosyl hydrolases family 43 PJW04_13230 PF07532 Bacterial Ig-like domain (group 4) PJW04_13235 PF00593 TonB dependent receptor PJW04_13235 PF07715 TonB-dependent Receptor Plug Domain PJW04_13245 PF09286 Pro-kumamolisin, activation domain PJW04_13245 PF00082 Subtilase family PJW04_13265 PF13520 Amino acid permease PJW04_13280 PF01321 Creatinase/Prolidase N-terminal domain PJW04_13280 PF00557 Metallopeptidase family M24 PJW04_13285 PF00171 Aldehyde dehydrogenase family PJW04_13290 PF00701 Dihydrodipicolinate synthetase family PJW04_13295 PF04324 BFD-like [2Fe-2S] binding domain PJW04_13295 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_13305 PF01266 FAD dependent oxidoreductase PJW04_13310 PF05544 Proline racemase PJW04_13320 PF00448 SRP54-type protein, GTPase domain PJW04_13320 PF02881 SRP54-type protein, helical bundle domain PJW04_13325 PF10576 Iron-sulfur binding domain of endonuclease III PJW04_13325 PF00633 Helix-hairpin-helix motif PJW04_13325 PF00730 HhH-GPD superfamily base excision DNA repair protein PJW04_13325 PF14815 NUDIX domain PJW04_13330 PF04362 Bacterial Fe(2+) trafficking PJW04_13335 PF00072 Response regulator receiver domain PJW04_13335 PF13426 PAS domain PJW04_13335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_13365 PF08212 Lipocalin-like domain PJW04_13375 PF12806 Acetyl-CoA dehydrogenase C-terminal like PJW04_13375 PF02770 Acyl-CoA dehydrogenase, middle domain PJW04_13375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJW04_13375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJW04_13385 PF02779 Transketolase, pyrimidine binding domain PJW04_13385 PF13292 1-deoxy-D-xylulose-5-phosphate synthase PJW04_13385 PF02780 Transketolase, C-terminal domain PJW04_13405 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family PJW04_13410 PF16123 Hydroxyacylglutathione hydrolase C-terminus PJW04_13410 PF00753 Metallo-beta-lactamase superfamily PJW04_13415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PJW04_13415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PJW04_13430 PF03808 Glycosyl transferase WecB/TagA/CpsF family PJW04_13445 PF14667 Polysaccharide biosynthesis C-terminal domain PJW04_13455 PF13439 Glycosyltransferase Family 4 PJW04_13455 PF00534 Glycosyl transferases group 1 PJW04_13475 PF02397 Bacterial sugar transferase PJW04_13495 PF13411 MerR HTH family regulatory protein PJW04_13500 PF00216 Bacterial DNA-binding protein PJW04_13505 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PJW04_13505 PF01588 Putative tRNA binding domain PJW04_13505 PF03483 B3/4 domain PJW04_13505 PF03484 tRNA synthetase B5 domain PJW04_13505 PF03147 Ferredoxin-fold anticodon binding domain PJW04_13510 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PJW04_13510 PF01409 tRNA synthetases class II core domain (F) PJW04_13515 PF00453 Ribosomal protein L20 PJW04_13520 PF01632 Ribosomal protein L35 PJW04_13525 PF05198 Translation initiation factor IF-3, N-terminal domain PJW04_13525 PF00707 Translation initiation factor IF-3, C-terminal domain PJW04_13530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PJW04_13530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJW04_13530 PF02824 TGS domain PJW04_13530 PF03129 Anticodon binding domain PJW04_13535 PF00356 Bacterial regulatory proteins, lacI family PJW04_13540 PF00686 Starch binding domain PJW04_13540 PF00128 Alpha amylase, catalytic domain PJW04_13545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PJW04_13555 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation PJW04_13555 PF14508 Glycosyl-hydrolase 97 N-terminal PJW04_13555 PF10566 Glycoside hydrolase 97 PJW04_13570 PF00128 Alpha amylase, catalytic domain PJW04_13630 PF03135 CagE, TrbE, VirB family, component of type IV transporter system PJW04_13635 PF05101 Type IV secretory pathway, VirB3-like protein PJW04_13645 PF01464 Transglycosylase SLT domain PJW04_13650 PF00437 Type II/IV secretion system protein PJW04_13655 PF03743 Bacterial conjugation TrbI-like protein PJW04_13675 PF02534 Type IV secretory system Conjugative DNA transfer PJW04_13690 PF00271 Helicase conserved C-terminal domain PJW04_13690 PF04851 Type III restriction enzyme, res subunit PJW04_13690 PF02151 UvrB/uvrC motif PJW04_13690 PF12344 Ultra-violet resistance protein B PJW04_13690 PF17757 UvrB interaction domain PJW04_13705 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor PJW04_13705 PF07963 Prokaryotic N-terminal methylation motif PJW04_13710 PF05567 Neisseria PilC beta-propeller domain PJW04_13735 PF07694 5TMR of 5TMR-LYT PJW04_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_13735 PF06580 Histidine kinase PJW04_13740 PF03641 Possible lysine decarboxylase PJW04_13740 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases PJW04_13740 PF11892 Domain of unknown function (DUF3412) PJW04_13745 PF00593 TonB dependent receptor PJW04_13750 PF01914 MarC family integral membrane protein PJW04_13760 PF00462 Glutaredoxin PJW04_13765 PF02777 Iron/manganese superoxide dismutases, C-terminal domain PJW04_13765 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PJW04_13770 PF02222 ATP-grasp domain PJW04_13770 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PJW04_13775 PF00731 AIR carboxylase PJW04_13785 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PJW04_13785 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PJW04_13795 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PJW04_13795 PF00013 KH domain PJW04_13795 PF01138 3' exoribonuclease family, domain 1 PJW04_13795 PF00575 S1 RNA binding domain PJW04_13795 PF03725 3' exoribonuclease family, domain 2 PJW04_13800 PF00312 Ribosomal protein S15 PJW04_13805 PF16198 tRNA pseudouridylate synthase B C-terminal domain PJW04_13805 PF09157 Pseudouridine synthase II TruB, C-terminal PJW04_13805 PF01509 TruB family pseudouridylate synthase (N terminal domain) PJW04_13810 PF02033 Ribosome-binding factor A PJW04_13815 PF00009 Elongation factor Tu GTP binding domain PJW04_13815 PF11987 Translation-initiation factor 2 PJW04_13815 PF04760 Translation initiation factor IF-2, N-terminal region PJW04_13815 PF08364 Bacterial translation initiation factor IF-2 associated region PJW04_13820 PF08529 NusA N-terminal domain PJW04_13820 PF13184 NusA-like KH domain PJW04_13820 PF00575 S1 RNA binding domain PJW04_13825 PF02576 RimP N-terminal domain PJW04_13825 PF17384 RimP C-terminal SH3 domain PJW04_13835 PF00361 Proton-conducting membrane transporter PJW04_13840 PF00361 Proton-conducting membrane transporter PJW04_13840 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus PJW04_13845 PF00361 Proton-conducting membrane transporter PJW04_13845 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PJW04_13850 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PJW04_13855 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 PJW04_13860 PF12838 4Fe-4S dicluster domain PJW04_13865 PF00146 NADH dehydrogenase PJW04_13870 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal PJW04_13870 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region PJW04_13870 PF00384 Molybdopterin oxidoreductase PJW04_13875 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region PJW04_13875 PF10531 SLBB domain PJW04_13875 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit PJW04_13885 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit PJW04_13890 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PJW04_13895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit PJW04_13900 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PJW04_13915 PF00121 Triosephosphate isomerase PJW04_13920 PF00106 short chain dehydrogenase PJW04_13935 PF03707 Bacterial signalling protein N terminal repeat PJW04_13935 PF00990 Diguanylate cyclase, GGDEF domain PJW04_13935 PF00563 EAL domain PJW04_13950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PJW04_13950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PJW04_13950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PJW04_13950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PJW04_13955 PF17848 Acetyl-coA carboxylase zinc finger domain PJW04_13955 PF01039 Carboxyl transferase domain PJW04_13960 PF00290 Tryptophan synthase alpha chain PJW04_13970 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_13975 PF03466 LysR substrate binding domain PJW04_13980 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PJW04_13985 PF01416 tRNA pseudouridine synthase PJW04_14000 PF01118 Semialdehyde dehydrogenase, NAD binding domain PJW04_14000 PF02774 Semialdehyde dehydrogenase, dimerisation domain PJW04_14005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PJW04_14005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PJW04_14010 PF01264 Chorismate synthase PJW04_14015 PF05175 Methyltransferase small domain PJW04_14020 PF02630 SCO1/SenC PJW04_14025 PF02666 Phosphatidylserine decarboxylase PJW04_14035 PF05872 Bacterial protein of unknown function (DUF853) PJW04_14040 PF00293 NUDIX domain PJW04_14055 PF01272 Transcription elongation factor, GreA/GreB, C-term PJW04_14055 PF03449 Transcription elongation factor, N-terminal PJW04_14060 PF18693 TRAM domain PJW04_14060 PF04055 Radical SAM superfamily PJW04_14060 PF00919 Uncharacterized protein family UPF0004 PJW04_14065 PF01738 Dienelactone hydrolase family PJW04_14085 PF00692 dUTPase PJW04_14090 PF10609 NUBPL iron-transfer P-loop NTPase PJW04_14095 PF00593 TonB dependent receptor PJW04_14095 PF07715 TonB-dependent Receptor Plug Domain PJW04_14110 PF01431 Peptidase family M13 PJW04_14110 PF05649 Peptidase family M13 PJW04_14115 PF05649 Peptidase family M13 PJW04_14115 PF01431 Peptidase family M13 PJW04_14135 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_14135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PJW04_14140 PF01266 FAD dependent oxidoreductase PJW04_14145 PF04235 Protein of unknown function (DUF418) PJW04_14150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PJW04_14155 PF00877 NlpC/P60 family PJW04_14160 PF00877 NlpC/P60 family PJW04_14170 PF13649 Methyltransferase domain PJW04_14175 PF00375 Sodium:dicarboxylate symporter family PJW04_14180 PF00245 Alkaline phosphatase PJW04_14185 PF11734 TilS substrate C-terminal domain PJW04_14185 PF01171 PP-loop family PJW04_14185 PF09179 TilS substrate binding domain PJW04_14190 PF02609 Exonuclease VII small subunit PJW04_14195 PF00348 Polyprenyl synthetase PJW04_14200 PF14521 Lysine-specific metallo-endopeptidase PJW04_14210 PF01523 Putative modulator of DNA gyrase PJW04_14215 PF04751 Protein of unknown function (DUF615) PJW04_14220 PF01523 Putative modulator of DNA gyrase PJW04_14230 PF13502 AsmA-like C-terminal region PJW04_14230 PF13116 Protein of unknown function PJW04_14235 PF10150 Ribonuclease E/G family PJW04_14235 PF00575 S1 RNA binding domain PJW04_14240 PF02545 Maf-like protein PJW04_14245 PF04402 Protein of unknown function (DUF541) PJW04_14255 PF02590 Predicted SPOUT methyltransferase PJW04_14270 PF01467 Cytidylyltransferase-like PJW04_14285 PF13603 Leucyl-tRNA synthetase, Domain 2 PJW04_14285 PF00133 tRNA synthetases class I (I, L, M and V) PJW04_14285 PF08264 Anticodon-binding domain of tRNA PJW04_14295 PF00085 Thioredoxin PJW04_14325 PF04070 Domain of unknown function (DUF378) PJW04_14330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PJW04_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_14340 PF03466 LysR substrate binding domain PJW04_14370 PF00005 ABC transporter PJW04_14370 PF00664 ABC transporter transmembrane region PJW04_14380 PF00873 AcrB/AcrD/AcrF family PJW04_14395 PF02321 Outer membrane efflux protein PJW04_14400 PF00072 Response regulator receiver domain PJW04_14400 PF00486 Transcriptional regulatory protein, C terminal PJW04_14405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_14405 PF00512 His Kinase A (phospho-acceptor) domain PJW04_14405 PF00672 HAMP domain PJW04_14410 PF00999 Sodium/hydrogen exchanger family PJW04_14415 PF00144 Beta-lactamase PJW04_14420 PF03737 Aldolase/RraA PJW04_14435 PF00990 Diguanylate cyclase, GGDEF domain PJW04_14440 PF00849 RNA pseudouridylate synthase PJW04_14440 PF01479 S4 domain PJW04_14445 PF08448 PAS fold PJW04_14445 PF00563 EAL domain PJW04_14445 PF00990 Diguanylate cyclase, GGDEF domain PJW04_14450 PF00270 DEAD/DEAH box helicase PJW04_14450 PF00271 Helicase conserved C-terminal domain PJW04_14450 PF03880 DbpA RNA binding domain PJW04_14455 PF04545 Sigma-70, region 4 PJW04_14455 PF04539 Sigma-70 region 3 PJW04_14455 PF04542 Sigma-70 region 2 PJW04_14500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PJW04_14500 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PJW04_14510 PF00654 Voltage gated chloride channel PJW04_14530 PF07715 TonB-dependent Receptor Plug Domain PJW04_14530 PF00593 TonB dependent receptor PJW04_14540 PF01483 Proprotein convertase P-domain PJW04_14540 PF00082 Subtilase family PJW04_14550 PF00082 Subtilase family PJW04_14550 PF01483 Proprotein convertase P-domain PJW04_14560 PF00248 Aldo/keto reductase family PJW04_14565 PF07690 Major Facilitator Superfamily PJW04_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_14570 PF03466 LysR substrate binding domain PJW04_14580 PF06719 AraC-type transcriptional regulator N-terminus PJW04_14580 PF12833 Helix-turn-helix domain PJW04_14590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_14590 PF03466 LysR substrate binding domain PJW04_14595 PF16859 Tetracyclin repressor-like, C-terminal domain PJW04_14595 PF00440 Bacterial regulatory proteins, tetR family PJW04_14600 PF02321 Outer membrane efflux protein PJW04_14605 PF00873 AcrB/AcrD/AcrF family PJW04_14610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_14610 PF00529 HlyD membrane-fusion protein of T1SS PJW04_14620 PF01475 Ferric uptake regulator family PJW04_14625 PF00749 tRNA synthetases class I (E and Q), catalytic domain PJW04_14650 PF06123 Inner membrane protein CreD PJW04_14660 PF00672 HAMP domain PJW04_14660 PF00512 His Kinase A (phospho-acceptor) domain PJW04_14660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_14665 PF00072 Response regulator receiver domain PJW04_14665 PF00486 Transcriptional regulatory protein, C terminal PJW04_14670 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ PJW04_14680 PF03461 TRCF domain PJW04_14680 PF02559 CarD-like/TRCF domain PJW04_14680 PF00270 DEAD/DEAH box helicase PJW04_14680 PF00271 Helicase conserved C-terminal domain PJW04_14680 PF17757 UvrB interaction domain PJW04_14695 PF09078 CheY binding PJW04_14695 PF01627 Hpt domain PJW04_14695 PF01584 CheW-like domain PJW04_14695 PF02895 Signal transducing histidine kinase, homodimeric domain PJW04_14695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_14700 PF02203 Tar ligand binding domain homologue PJW04_14700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_14700 PF00672 HAMP domain PJW04_14705 PF01584 CheW-like domain PJW04_14710 PF00563 EAL domain PJW04_14710 PF00990 Diguanylate cyclase, GGDEF domain PJW04_14710 PF13426 PAS domain PJW04_14715 PF01739 CheR methyltransferase, SAM binding domain PJW04_14715 PF03705 CheR methyltransferase, all-alpha domain PJW04_14720 PF01339 CheB methylesterase PJW04_14720 PF00072 Response regulator receiver domain PJW04_14725 PF13091 PLD-like domain PJW04_14730 PF01431 Peptidase family M13 PJW04_14730 PF05649 Peptidase family M13 PJW04_14740 PF00300 Histidine phosphatase superfamily (branch 1) PJW04_14745 PF04493 Endonuclease V PJW04_14755 PF02678 Pirin PJW04_14755 PF05726 Pirin C-terminal cupin domain PJW04_14770 PF02678 Pirin PJW04_14770 PF05726 Pirin C-terminal cupin domain PJW04_14775 PF02554 Carbon starvation protein CstA PJW04_14775 PF13722 5TM C-terminal transporter carbon starvation CstA PJW04_14780 PF04328 Selenoprotein, putative PJW04_14815 PF13478 XdhC Rossmann domain PJW04_14815 PF02625 XdhC and CoxI family PJW04_14820 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PJW04_14820 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PJW04_14825 PF03450 CO dehydrogenase flavoprotein C-terminal domain PJW04_14825 PF00941 FAD binding domain in molybdopterin dehydrogenase PJW04_14830 PF10518 TAT (twin-arginine translocation) pathway signal sequence PJW04_14830 PF01799 [2Fe-2S] binding domain PJW04_14830 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_14835 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_14835 PF14765 Polyketide synthase dehydratase PJW04_14835 PF00550 Phosphopantetheine attachment site PJW04_14835 PF00698 Acyl transferase domain PJW04_14835 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_14835 PF08659 KR domain PJW04_14835 PF00107 Zinc-binding dehydrogenase PJW04_14835 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_14835 PF16197 Ketoacyl-synthetase C-terminal extension PJW04_14840 PF00563 EAL domain PJW04_14840 PF01590 GAF domain PJW04_14840 PF00990 Diguanylate cyclase, GGDEF domain PJW04_14840 PF00360 Phytochrome region PJW04_14845 PF00436 Single-strand binding protein family PJW04_14850 PF00348 Polyprenyl synthetase PJW04_14860 PF08245 Mur ligase middle domain PJW04_14860 PF02875 Mur ligase family, glutamate ligase domain PJW04_14875 PF01842 ACT domain PJW04_14875 PF00696 Amino acid kinase family PJW04_14880 PF02567 Phenazine biosynthesis-like protein PJW04_14885 PF02567 Phenazine biosynthesis-like protein PJW04_14895 PF02566 OsmC-like protein PJW04_14900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PJW04_14900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PJW04_14905 PF03652 Holliday junction resolvase PJW04_14910 PF02622 Uncharacterized ACR, COG1678 PJW04_14915 PF13673 Acetyltransferase (GNAT) domain PJW04_14915 PF13302 Acetyltransferase (GNAT) domain PJW04_14915 PF00958 GMP synthase C terminal domain PJW04_14915 PF00117 Glutamine amidotransferase class-I PJW04_14915 PF03352 Methyladenine glycosylase PJW04_14930 PF00437 Type II/IV secretion system protein PJW04_14935 PF00437 Type II/IV secretion system protein PJW04_14940 PF01168 Alanine racemase, N-terminal domain PJW04_14945 PF14748 Pyrroline-5-carboxylate reductase dimerisation PJW04_14945 PF03807 NADP oxidoreductase coenzyme F420-dependent PJW04_14955 PF01551 Peptidase family M23 PJW04_14975 PF01965 DJ-1/PfpI family PJW04_14985 PF02082 Transcriptional regulator PJW04_14990 PF01458 Uncharacterized protein family (UPF0051) PJW04_14995 PF00005 ABC transporter PJW04_15000 PF01458 Uncharacterized protein family (UPF0051) PJW04_15005 PF00266 Aminotransferase class-V PJW04_15010 PF00583 Acetyltransferase (GNAT) family PJW04_15015 PF00355 Rieske [2Fe-2S] domain PJW04_15020 PF00593 TonB dependent receptor PJW04_15020 PF07715 TonB-dependent Receptor Plug Domain PJW04_15025 PF13640 2OG-Fe(II) oxygenase superfamily PJW04_15025 PF18331 PKHD-type hydroxylase C-terminal domain PJW04_15050 PF02424 ApbE family PJW04_15055 PF00258 Flavodoxin PJW04_15055 PF00175 Oxidoreductase NAD-binding domain PJW04_15055 PF00667 FAD binding domain PJW04_15085 PF01636 Phosphotransferase enzyme family PJW04_15090 PF00483 Nucleotidyl transferase PJW04_15095 PF00308 Bacterial dnaA protein PJW04_15100 PF01594 AI-2E family transporter PJW04_15110 PF00586 AIR synthase related protein, N-terminal domain PJW04_15110 PF02769 AIR synthase related protein, C-terminal domain PJW04_15120 PF00551 Formyl transferase PJW04_15140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PJW04_15145 PF01722 BolA-like protein PJW04_15150 PF00571 CBS domain PJW04_15150 PF01380 SIS domain PJW04_15165 PF03968 OstA-like protein PJW04_15170 PF00005 ABC transporter PJW04_15175 PF00309 Sigma-54 factor, Activator interacting domain (AID) PJW04_15175 PF04552 Sigma-54, DNA binding domain PJW04_15175 PF04963 Sigma-54 factor, core binding domain PJW04_15180 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PJW04_15185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PJW04_15190 PF07475 HPr Serine kinase C-terminal domain PJW04_15190 PF02603 HPr Serine kinase N terminus PJW04_15195 PF03668 P-loop ATPase protein family PJW04_15205 PF00381 PTS HPr component phosphorylation site PJW04_15210 PF02896 PEP-utilising enzyme, TIM barrel domain PJW04_15210 PF00391 PEP-utilising enzyme, mobile domain PJW04_15210 PF05524 PEP-utilising enzyme, N-terminal PJW04_15220 PF00571 CBS domain PJW04_15220 PF01769 Divalent cation transporter PJW04_15220 PF03448 MgtE intracellular N domain PJW04_15225 PF00756 Putative esterase PJW04_15230 PF02322 Cytochrome bd terminal oxidase subunit II PJW04_15235 PF01654 Cytochrome bd terminal oxidase subunit I PJW04_15245 PF00324 Amino acid permease PJW04_15250 PF00544 Pectate lyase PJW04_15255 PF00561 alpha/beta hydrolase fold PJW04_15260 PF00196 Bacterial regulatory proteins, luxR family PJW04_15265 PF00324 Amino acid permease PJW04_15290 PF12706 Beta-lactamase superfamily domain PJW04_15295 PF04820 Tryptophan halogenase PJW04_15320 PF00376 MerR family regulatory protein PJW04_15320 PF09278 MerR, DNA binding PJW04_15325 PF07690 Major Facilitator Superfamily PJW04_15330 PF03738 Glutathionylspermidine synthase preATP-grasp PJW04_15355 PF04012 PspA/IM30 family PJW04_15365 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region PJW04_15365 PF01243 Pyridoxamine 5'-phosphate oxidase PJW04_15370 PF01202 Shikimate kinase PJW04_15375 PF01761 3-dehydroquinate synthase PJW04_15385 PF01208 Uroporphyrinogen decarboxylase (URO-D) PJW04_15390 PF07690 Major Facilitator Superfamily PJW04_15395 PF17149 Periplasmic sensor domain found in signal transduction proteins PJW04_15395 PF00672 HAMP domain PJW04_15395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_15395 PF00512 His Kinase A (phospho-acceptor) domain PJW04_15395 PF01627 Hpt domain PJW04_15395 PF00072 Response regulator receiver domain PJW04_15400 PF17149 Periplasmic sensor domain found in signal transduction proteins PJW04_15400 PF00672 HAMP domain PJW04_15400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_15400 PF00512 His Kinase A (phospho-acceptor) domain PJW04_15400 PF01627 Hpt domain PJW04_15400 PF00072 Response regulator receiver domain PJW04_15405 PF17149 Periplasmic sensor domain found in signal transduction proteins PJW04_15405 PF00672 HAMP domain PJW04_15405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_15405 PF01627 Hpt domain PJW04_15405 PF00512 His Kinase A (phospho-acceptor) domain PJW04_15405 PF00072 Response regulator receiver domain PJW04_15410 PF00072 Response regulator receiver domain PJW04_15410 PF01627 Hpt domain PJW04_15410 PF00512 His Kinase A (phospho-acceptor) domain PJW04_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_15415 PF04264 YceI-like domain PJW04_15435 PF03315 Serine dehydratase beta chain PJW04_15435 PF03313 Serine dehydratase alpha chain PJW04_15440 PF00561 alpha/beta hydrolase fold PJW04_15445 PF03447 Homoserine dehydrogenase, NAD binding domain PJW04_15445 PF00742 Homoserine dehydrogenase PJW04_15445 PF00696 Amino acid kinase family PJW04_15450 PF01053 Cys/Met metabolism PLP-dependent enzyme PJW04_15455 PF00561 alpha/beta hydrolase fold PJW04_15460 PF01551 Peptidase family M23 PJW04_15460 PF08525 Opacity-associated protein A N-terminal motif PJW04_15460 PF01476 LysM domain PJW04_15465 PF00009 Elongation factor Tu GTP binding domain PJW04_15465 PF16658 Class II release factor RF3, C-terminal domain PJW04_15470 PF03006 Haemolysin-III related PJW04_15475 PF05170 AsmA family PJW04_15480 PF00571 CBS domain PJW04_15480 PF00478 IMP dehydrogenase / GMP reductase domain PJW04_15485 PF00535 Glycosyl transferase family 2 PJW04_15490 PF00912 Transglycosylase PJW04_15495 PF01430 Hsp33 protein PJW04_15505 PF00593 TonB dependent receptor PJW04_15505 PF07715 TonB-dependent Receptor Plug Domain PJW04_15510 PF00440 Bacterial regulatory proteins, tetR family PJW04_15515 PF00561 alpha/beta hydrolase fold PJW04_15520 PF09317 Domain of unknown function (DUF1974) PJW04_15520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain PJW04_15520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain PJW04_15555 PF01597 Glycine cleavage H-protein PJW04_15560 PF08669 Glycine cleavage T-protein C-terminal barrel domain PJW04_15560 PF01571 Aminomethyltransferase folate-binding domain PJW04_15575 PF02694 Uncharacterised BCR, YnfA/UPF0060 family PJW04_15580 PF03819 MazG nucleotide pyrophosphohydrolase domain PJW04_15585 PF00459 Inositol monophosphatase family PJW04_15590 PF00293 NUDIX domain PJW04_15595 PF00202 Aminotransferase class-III PJW04_15600 PF04452 RNA methyltransferase PJW04_15605 PF02685 Glucokinase PJW04_15620 PF01476 LysM domain PJW04_15620 PF00704 Glycosyl hydrolases family 18 PJW04_15625 PF07691 PA14 domain PJW04_15625 PF02838 Glycosyl hydrolase family 20, domain 2 PJW04_15625 PF00728 Glycosyl hydrolase family 20, catalytic domain PJW04_15635 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJW04_15635 PF07691 PA14 domain PJW04_15635 PF14310 Fibronectin type III-like domain PJW04_15635 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_15645 PF07971 Glycosyl hydrolase family 92 PJW04_15645 PF17678 Glycosyl hydrolase family 92 N-terminal domain PJW04_15650 PF01301 Glycosyl hydrolases family 35 PJW04_15680 PF03932 CutC family PJW04_15685 PF01112 Asparaginase PJW04_15690 PF12034 Domain of unknown function (DUF3520) PJW04_15690 PF12450 von Willebrand factor PJW04_15690 PF00092 von Willebrand factor type A domain PJW04_15695 PF04542 Sigma-70 region 2 PJW04_15695 PF08281 Sigma-70, region 4 PJW04_15705 PF13302 Acetyltransferase (GNAT) domain PJW04_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_15720 PF01627 Hpt domain PJW04_15720 PF00072 Response regulator receiver domain PJW04_15720 PF01584 CheW-like domain PJW04_15720 PF02895 Signal transducing histidine kinase, homodimeric domain PJW04_15725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_15725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term PJW04_15730 PF01584 CheW-like domain PJW04_15735 PF00072 Response regulator receiver domain PJW04_15740 PF00072 Response regulator receiver domain PJW04_15745 PF02951 Prokaryotic glutathione synthetase, N-terminal domain PJW04_15745 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain PJW04_15780 PF00814 Glycoprotease family PJW04_15785 PF04851 Type III restriction enzyme, res subunit PJW04_15785 PF13307 Helicase C-terminal domain PJW04_15795 PF00905 Penicillin binding protein transpeptidase domain PJW04_15795 PF14814 Bifunctional transglycosylase second domain PJW04_15795 PF00912 Transglycosylase PJW04_15800 PF00535 Glycosyl transferase family 2 PJW04_15810 PF02824 TGS domain PJW04_15810 PF13291 ACT domain PJW04_15810 PF04607 Region found in RelA / SpoT proteins PJW04_15815 PF08042 PqqA family PJW04_15820 PF12706 Beta-lactamase superfamily domain PJW04_15825 PF03070 TENA/THI-4/PQQC family PJW04_15830 PF05402 Coenzyme PQQ synthesis protein D (PqqD) PJW04_15835 PF04055 Radical SAM superfamily PJW04_15835 PF13186 Iron-sulfur cluster-binding domain PJW04_15850 PF02685 Glucokinase PJW04_15860 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold PJW04_15860 PF00271 Helicase conserved C-terminal domain PJW04_15860 PF04408 Helicase associated domain (HA2) PJW04_15860 PF11898 Domain of unknown function (DUF3418) PJW04_15860 PF00270 DEAD/DEAH box helicase PJW04_15865 PF00210 Ferritin-like domain PJW04_15870 PF00570 HRDC domain PJW04_15870 PF09382 RQC domain PJW04_15870 PF00270 DEAD/DEAH box helicase PJW04_15870 PF00271 Helicase conserved C-terminal domain PJW04_15870 PF16124 RecQ zinc-binding PJW04_15890 PF01479 S4 domain PJW04_15890 PF00849 RNA pseudouridylate synthase PJW04_15900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_15900 PF00672 HAMP domain PJW04_15900 PF02203 Tar ligand binding domain homologue PJW04_15905 PF01810 LysE type translocator PJW04_15910 PF03466 LysR substrate binding domain PJW04_15910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_15920 PF07536 HWE histidine kinase PJW04_15920 PF13426 PAS domain PJW04_15920 PF13581 Histidine kinase-like ATPase domain PJW04_15925 PF06508 Queuosine biosynthesis protein QueC PJW04_15935 PF04055 Radical SAM superfamily PJW04_15945 PF00691 OmpA family PJW04_15950 PF04052 TolB amino-terminal domain PJW04_15950 PF07676 WD40-like Beta Propeller Repeat PJW04_15960 PF02472 Biopolymer transport protein ExbD/TolR PJW04_15965 PF01618 MotA/TolQ/ExbB proton channel family PJW04_15970 PF03061 Thioesterase superfamily PJW04_15975 PF05491 RuvB C-terminal winged helix domain PJW04_15975 PF17864 RuvB AAA lid domain PJW04_15975 PF05496 Holliday junction DNA helicase RuvB P-loop domain PJW04_15985 PF02705 K+ potassium transporter PJW04_15990 PF01330 RuvA N terminal domain PJW04_15990 PF07499 RuvA, C-terminal domain PJW04_15995 PF02075 Crossover junction endodeoxyribonuclease RuvC PJW04_16000 PF01709 Transcriptional regulator PJW04_16030 PF02938 GAD domain PJW04_16030 PF00152 tRNA synthetases class II (D, K and N) PJW04_16030 PF01336 OB-fold nucleic acid binding domain PJW04_16045 PF07690 Major Facilitator Superfamily PJW04_16055 PF05506 Domain of unknown function (DUF756) PJW04_16055 PF04185 Phosphoesterase family PJW04_16060 PF13472 GDSL-like Lipase/Acylhydrolase family PJW04_16060 PF07859 alpha/beta hydrolase fold PJW04_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_16070 PF03466 LysR substrate binding domain PJW04_16080 PF00005 ABC transporter PJW04_16080 PF12848 ABC transporter PJW04_16085 PF00593 TonB dependent receptor PJW04_16085 PF07715 TonB-dependent Receptor Plug Domain PJW04_16095 PF00593 TonB dependent receptor PJW04_16095 PF07715 TonB-dependent Receptor Plug Domain PJW04_16100 PF07715 TonB-dependent Receptor Plug Domain PJW04_16100 PF00593 TonB dependent receptor PJW04_16105 PF00067 Cytochrome P450 PJW04_16110 PF00999 Sodium/hydrogen exchanger family PJW04_16110 PF02254 TrkA-N domain PJW04_16135 PF00593 TonB dependent receptor PJW04_16135 PF07660 Secretin and TonB N terminus short domain PJW04_16135 PF07715 TonB-dependent Receptor Plug Domain PJW04_16145 PF06276 Ferric iron reductase FhuF-like transporter PJW04_16145 PF04183 IucA / IucC family PJW04_16150 PF07690 Major Facilitator Superfamily PJW04_16155 PF06276 Ferric iron reductase FhuF-like transporter PJW04_16155 PF04183 IucA / IucC family PJW04_16160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PJW04_16160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PJW04_16180 PF02654 Cobalamin-5-phosphate synthase PJW04_16190 PF02277 Phosphoribosyltransferase PJW04_16195 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PJW04_16200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PJW04_16200 PF07685 CobB/CobQ-like glutamine amidotransferase domain PJW04_16205 PF00155 Aminotransferase class I and II PJW04_16210 PF03186 CobD/Cbib protein PJW04_16210 PF17113 Regulatory signalling modulator protein AmpE PJW04_16215 PF12557 Cob(I)alamin adenosyltransferase N terminal PJW04_16215 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PJW04_16230 PF07715 TonB-dependent Receptor Plug Domain PJW04_16230 PF00593 TonB dependent receptor PJW04_16235 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_16235 PF02861 Clp amino terminal domain, pathogenicity island component PJW04_16235 PF17871 AAA lid domain PJW04_16235 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_16235 PF07724 AAA domain (Cdc48 subfamily) PJW04_16240 PF00005 ABC transporter PJW04_16245 PF01541 GIY-YIG catalytic domain PJW04_16280 PF00593 TonB dependent receptor PJW04_16280 PF07715 TonB-dependent Receptor Plug Domain PJW04_16285 PF02358 Trehalose-phosphatase PJW04_16290 PF00723 Glycosyl hydrolases family 15 PJW04_16295 PF00982 Glycosyltransferase family 20 PJW04_16300 PF01011 PQQ enzyme repeat PJW04_16305 PF00672 HAMP domain PJW04_16305 PF02203 Tar ligand binding domain homologue PJW04_16305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_16310 PF04134 Protein of unknown function, DUF393 PJW04_16320 PF02578 Multi-copper polyphenol oxidoreductase laccase PJW04_16325 PF00849 RNA pseudouridylate synthase PJW04_16330 PF13525 Outer membrane lipoprotein PJW04_16340 PF00795 Carbon-nitrogen hydrolase PJW04_16340 PF02540 NAD synthase PJW04_16355 PF02629 CoA binding domain PJW04_16355 PF00549 CoA-ligase PJW04_16360 PF00549 CoA-ligase PJW04_16360 PF08442 ATP-grasp domain PJW04_16365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_16365 PF00512 His Kinase A (phospho-acceptor) domain PJW04_16370 PF02954 Bacterial regulatory protein, Fis family PJW04_16370 PF00072 Response regulator receiver domain PJW04_16370 PF00158 Sigma-54 interaction domain PJW04_16390 PF00535 Glycosyl transferase family 2 PJW04_16395 PF00534 Glycosyl transferases group 1 PJW04_16415 PF07963 Prokaryotic N-terminal methylation motif PJW04_16415 PF00114 Pilin (bacterial filament) PJW04_16420 PF00114 Pilin (bacterial filament) PJW04_16420 PF07963 Prokaryotic N-terminal methylation motif PJW04_16425 PF00482 Type II secretion system (T2SS), protein F PJW04_16430 PF06750 Bacterial Peptidase A24 N-terminal domain PJW04_16430 PF01478 Type IV leader peptidase family PJW04_16435 PF01121 Dephospho-CoA kinase PJW04_16440 PF11808 Phosphate regulon sensor protein PhoR PJW04_16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_16440 PF00512 His Kinase A (phospho-acceptor) domain PJW04_16440 PF00989 PAS fold PJW04_16445 PF00072 Response regulator receiver domain PJW04_16445 PF00486 Transcriptional regulatory protein, C terminal PJW04_16455 PF08443 RimK-like ATP-grasp domain PJW04_16455 PF18030 RimK PreATP-grasp domain PJW04_16460 PF00128 Alpha amylase, catalytic domain PJW04_16460 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PJW04_16485 PF03797 Autotransporter beta-domain PJW04_16485 PF00657 GDSL-like Lipase/Acylhydrolase PJW04_16495 PF05690 Thiazole biosynthesis protein ThiG PJW04_16500 PF02390 Putative methyltransferase PJW04_16505 PF03600 Citrate transporter PJW04_16505 PF02080 TrkA-C domain PJW04_16520 PF01557 Fumarylacetoacetate (FAA) hydrolase family PJW04_16525 PF01741 Large-conductance mechanosensitive channel, MscL PJW04_16535 PF00356 Bacterial regulatory proteins, lacI family PJW04_16545 PF02837 Glycosyl hydrolases family 2, sugar binding domain PJW04_16545 PF00703 Glycosyl hydrolases family 2 PJW04_16545 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain PJW04_16550 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation PJW04_16550 PF14508 Glycosyl-hydrolase 97 N-terminal PJW04_16550 PF10566 Glycoside hydrolase 97 PJW04_16565 PF00588 SpoU rRNA Methylase family PJW04_16565 PF08032 RNA 2'-O ribose methyltransferase substrate binding PJW04_16580 PF11838 ERAP1-like C-terminal domain PJW04_16580 PF01433 Peptidase family M1 domain PJW04_16585 PF00873 AcrB/AcrD/AcrF family PJW04_16590 PF00529 HlyD membrane-fusion protein of T1SS PJW04_16590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_16600 PF00009 Elongation factor Tu GTP binding domain PJW04_16605 PF01507 Phosphoadenosine phosphosulfate reductase family PJW04_16610 PF00667 FAD binding domain PJW04_16610 PF00175 Oxidoreductase NAD-binding domain PJW04_16610 PF00258 Flavodoxin PJW04_16615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PJW04_16615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain PJW04_16620 PF01507 Phosphoadenosine phosphosulfate reductase family PJW04_16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_16640 PF00512 His Kinase A (phospho-acceptor) domain PJW04_16640 PF01627 Hpt domain PJW04_16640 PF00072 Response regulator receiver domain PJW04_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_16660 PF03466 LysR substrate binding domain PJW04_16665 PF10414 Sirohaem synthase dimerisation region PJW04_16665 PF14824 Sirohaem biosynthesis protein central PJW04_16665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PJW04_16670 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_16680 PF01661 Macro domain PJW04_16685 PF00274 Fructose-bisphosphate aldolase class-I PJW04_16690 PF00224 Pyruvate kinase, barrel domain PJW04_16690 PF02887 Pyruvate kinase, alpha/beta domain PJW04_16695 PF13419 Haloacid dehalogenase-like hydrolase PJW04_16700 PF00162 Phosphoglycerate kinase PJW04_16720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PJW04_16720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PJW04_16730 PF03922 OmpW family PJW04_16735 PF03922 OmpW family PJW04_16755 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_16760 PF03459 TOBE domain PJW04_16760 PF00005 ABC transporter PJW04_16795 PF01476 LysM domain PJW04_16795 PF03734 L,D-transpeptidase catalytic domain PJW04_16800 PF04225 Opacity-associated protein A LysM-like domain PJW04_16800 PF01551 Peptidase family M23 PJW04_16805 PF07715 TonB-dependent Receptor Plug Domain PJW04_16805 PF00593 TonB dependent receptor PJW04_16810 PF02779 Transketolase, pyrimidine binding domain PJW04_16810 PF02780 Transketolase, C-terminal domain PJW04_16810 PF00456 Transketolase, thiamine diphosphate binding domain PJW04_16815 PF00375 Sodium:dicarboxylate symporter family PJW04_16825 PF00092 von Willebrand factor type A domain PJW04_16825 PF07584 Aerotolerance regulator N-terminal PJW04_16845 PF17863 AAA lid domain PJW04_16845 PF07726 ATPase family associated with various cellular activities (AAA) PJW04_16850 PF11741 AMIN domain PJW04_16850 PF00263 Bacterial type II and III secretion system protein PJW04_16850 PF03958 Bacterial type II/III secretion system short domain PJW04_16850 PF07660 Secretin and TonB N terminus short domain PJW04_16855 PF04351 Pilus assembly protein, PilP PJW04_16860 PF04350 Pilus assembly protein, PilO PJW04_16865 PF05137 Fimbrial assembly protein (PilN) PJW04_16870 PF11104 Type IV pilus assembly protein PilM; PJW04_16875 PF00912 Transglycosylase PJW04_16875 PF00905 Penicillin binding protein transpeptidase domain PJW04_16875 PF17092 Penicillin-binding protein OB-like domain PJW04_16885 PF00285 Citrate synthase, C-terminal domain PJW04_16890 PF01197 Ribosomal protein L31 PJW04_16895 PF01156 Inosine-uridine preferring nucleoside hydrolase PJW04_16900 PF17191 RecG wedge domain PJW04_16900 PF00270 DEAD/DEAH box helicase PJW04_16900 PF00271 Helicase conserved C-terminal domain PJW04_16905 PF01042 Endoribonuclease L-PSP PJW04_16910 PF13291 ACT domain PJW04_16910 PF04607 Region found in RelA / SpoT proteins PJW04_16910 PF02824 TGS domain PJW04_16915 PF01192 RNA polymerase Rpb6 PJW04_16920 PF00625 Guanylate kinase PJW04_16925 PF08340 Domain of unknown function (DUF1732) PJW04_16925 PF03755 YicC-like family, N-terminal region PJW04_16930 PF03725 3' exoribonuclease family, domain 2 PJW04_16930 PF01138 3' exoribonuclease family, domain 1 PJW04_16940 PF01725 Ham1 family PJW04_16945 PF06969 HemN C-terminal domain PJW04_16945 PF04055 Radical SAM superfamily PJW04_16960 PF00557 Metallopeptidase family M24 PJW04_16970 PF05195 Aminopeptidase P, N-terminal domain PJW04_16970 PF00557 Metallopeptidase family M24 PJW04_16975 PF03695 Uncharacterised protein family (UPF0149) PJW04_16985 PF05164 Cell division protein ZapA PJW04_16995 PF01812 5-formyltetrahydrofolate cyclo-ligase family PJW04_17005 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PJW04_17015 PF13369 Transglutaminase-like superfamily PJW04_17020 PF00301 Rubredoxin PJW04_17025 PF02581 Thiamine monophosphate synthase PJW04_17035 PF00202 Aminotransferase class-III PJW04_17045 PF17874 MalT-like TPR region PJW04_17045 PF00196 Bacterial regulatory proteins, luxR family PJW04_17050 PF00127 Copper binding proteins, plastocyanin/azurin family PJW04_17055 PF00155 Aminotransferase class I and II PJW04_17065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PJW04_17065 PF00034 Cytochrome c PJW04_17070 PF01593 Flavin containing amine oxidoreductase PJW04_17085 PF00202 Aminotransferase class-III PJW04_17090 PF00520 Ion transport protein PJW04_17090 PF00027 Cyclic nucleotide-binding domain PJW04_17105 PF01569 PAP2 superfamily PJW04_17110 PF01062 Bestrophin, RFP-TM, chloride channel PJW04_17120 PF01225 Mur ligase family, catalytic domain PJW04_17120 PF02875 Mur ligase family, glutamate ligase domain PJW04_17120 PF08245 Mur ligase middle domain PJW04_17130 PF00365 Phosphofructokinase PJW04_17140 PF03030 Inorganic H+ pyrophosphatase PJW04_17150 PF00719 Inorganic pyrophosphatase PJW04_17160 PF00593 TonB dependent receptor PJW04_17160 PF07715 TonB-dependent Receptor Plug Domain PJW04_17165 PF12833 Helix-turn-helix domain PJW04_17170 PF18500 CadC C-terminal domain 1 PJW04_17170 PF00486 Transcriptional regulatory protein, C terminal PJW04_17175 PF13667 ThiC-associated domain PJW04_17175 PF01964 Radical SAM ThiC family PJW04_17180 PF00593 TonB dependent receptor PJW04_17180 PF07715 TonB-dependent Receptor Plug Domain PJW04_17185 PF00672 HAMP domain PJW04_17185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PJW04_17195 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PJW04_17195 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PJW04_17200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PJW04_17200 PF00205 Thiamine pyrophosphate enzyme, central domain PJW04_17200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PJW04_17210 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_17215 PF00682 HMGL-like PJW04_17215 PF08502 LeuA allosteric (dimerisation) domain PJW04_17220 PF00180 Isocitrate/isopropylmalate dehydrogenase PJW04_17225 PF00694 Aconitase C-terminal domain PJW04_17230 PF00330 Aconitase family (aconitate hydratase) PJW04_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_17240 PF00990 Diguanylate cyclase, GGDEF domain PJW04_17255 PF02321 Outer membrane efflux protein PJW04_17260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) PJW04_17265 PF03279 Bacterial lipid A biosynthesis acyltransferase PJW04_17290 PF00390 Malic enzyme, N-terminal domain PJW04_17290 PF03949 Malic enzyme, NAD binding domain PJW04_17290 PF01515 Phosphate acetyl/butaryl transferase PJW04_17295 PF00375 Sodium:dicarboxylate symporter family PJW04_17305 PF00512 His Kinase A (phospho-acceptor) domain PJW04_17305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_17305 PF02743 Cache domain PJW04_17310 PF07690 Major Facilitator Superfamily PJW04_17320 PF03466 LysR substrate binding domain PJW04_17320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_17325 PF00248 Aldo/keto reductase family PJW04_17340 PF00196 Bacterial regulatory proteins, luxR family PJW04_17340 PF00072 Response regulator receiver domain PJW04_17350 PF00512 His Kinase A (phospho-acceptor) domain PJW04_17350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_17350 PF08521 Two-component sensor kinase N-terminal PJW04_17355 PF00486 Transcriptional regulatory protein, C terminal PJW04_17355 PF00072 Response regulator receiver domain PJW04_17365 PF03600 Citrate transporter PJW04_17370 PF00106 short chain dehydrogenase PJW04_17375 PF00356 Bacterial regulatory proteins, lacI family PJW04_17390 PF00128 Alpha amylase, catalytic domain PJW04_17405 PF03193 RsgA GTPase PJW04_17410 PF00155 Aminotransferase class I and II PJW04_17425 PF01522 Polysaccharide deacetylase PJW04_17430 PF00462 Glutaredoxin PJW04_17445 PF01979 Amidohydrolase family PJW04_17450 PF01979 Amidohydrolase family PJW04_17470 PF02645 Uncharacterised protein, DegV family COG1307 PJW04_17475 PF01327 Polypeptide deformylase PJW04_17480 PF03960 ArsC family PJW04_17495 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) PJW04_17500 PF01270 Glycosyl hydrolases family 8 PJW04_17505 PF03170 Bacterial cellulose synthase subunit PJW04_17510 PF03552 Cellulose synthase PJW04_17510 PF00535 Glycosyl transferase family 2 PJW04_17510 PF07238 PilZ domain PJW04_17525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family PJW04_17525 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain PJW04_17560 PF07715 TonB-dependent Receptor Plug Domain PJW04_17560 PF00593 TonB dependent receptor PJW04_17570 PF00392 Bacterial regulatory proteins, gntR family PJW04_17570 PF07702 UTRA domain PJW04_17580 PF00263 Bacterial type II and III secretion system protein PJW04_17580 PF03958 Bacterial type II/III secretion system short domain PJW04_17590 PF10741 Type II secretion system (T2SS), protein M subtype b PJW04_17595 PF05137 Fimbrial assembly protein (PilN) PJW04_17600 PF03934 Type II secretion system (T2SS), protein K PJW04_17610 PF07963 Prokaryotic N-terminal methylation motif PJW04_17615 PF12019 Type II transport protein GspH PJW04_17620 PF08334 Type II secretion system (T2SS), protein G PJW04_17625 PF00482 Type II secretion system (T2SS), protein F PJW04_17630 PF00437 Type II/IV secretion system protein PJW04_17630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PJW04_17635 PF04151 Bacterial pre-peptidase C-terminal domain PJW04_17635 PF00082 Subtilase family PJW04_17640 PF13018 Extended Signal Peptide of Type V secretion system PJW04_17640 PF03895 YadA-like membrane anchor domain PJW04_17640 PF05658 Head domain of trimeric autotransporter adhesin PJW04_17640 PF05662 Coiled stalk of trimeric autotransporter adhesin PJW04_17645 PF00082 Subtilase family PJW04_17645 PF04151 Bacterial pre-peptidase C-terminal domain PJW04_17650 PF13018 Extended Signal Peptide of Type V secretion system PJW04_17650 PF03895 YadA-like membrane anchor domain PJW04_17650 PF05658 Head domain of trimeric autotransporter adhesin PJW04_17650 PF05662 Coiled stalk of trimeric autotransporter adhesin PJW04_17655 PF02769 AIR synthase related protein, C-terminal domain PJW04_17655 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal PJW04_17655 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PJW04_17660 PF10411 Disulfide bond isomerase protein N-terminus PJW04_17660 PF13098 Thioredoxin-like domain PJW04_17665 PF02899 Phage integrase, N-terminal SAM-like domain PJW04_17665 PF00589 Phage integrase family PJW04_17680 PF03739 Lipopolysaccharide export system permease LptF/LptG PJW04_17690 PF02789 Cytosol aminopeptidase family, N-terminal domain PJW04_17690 PF00883 Cytosol aminopeptidase family, catalytic domain PJW04_17705 PF08264 Anticodon-binding domain of tRNA PJW04_17705 PF00133 tRNA synthetases class I (I, L, M and V) PJW04_17705 PF10458 Valyl tRNA synthetase tRNA binding arm PJW04_17710 PF07715 TonB-dependent Receptor Plug Domain PJW04_17710 PF00593 TonB dependent receptor PJW04_17715 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain PJW04_17715 PF01464 Transglycosylase SLT domain PJW04_17720 PF00544 Pectate lyase PJW04_17735 PF01066 CDP-alcohol phosphatidyltransferase PJW04_17745 PF03129 Anticodon binding domain PJW04_17745 PF04073 Aminoacyl-tRNA editing domain PJW04_17745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PJW04_17750 PF00816 H-NS histone family PJW04_17760 PF02405 Permease MlaE PJW04_17765 PF00005 ABC transporter PJW04_17770 PF03886 ABC-type transport auxiliary lipoprotein component PJW04_17770 PF02470 MlaD protein PJW04_17790 PF14307 Glycosyltransferase WbsX PJW04_17790 PF05045 Rhamnan synthesis protein F PJW04_17795 PF01144 Coenzyme A transferase PJW04_17800 PF01144 Coenzyme A transferase PJW04_17805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PJW04_17805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PJW04_17805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PJW04_17805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PJW04_17810 PF01050 Mannose-6-phosphate isomerase PJW04_17810 PF00483 Nucleotidyl transferase PJW04_17815 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PJW04_17815 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PJW04_17815 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PJW04_17820 PF04321 RmlD substrate binding domain PJW04_17825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PJW04_17830 PF00483 Nucleotidyl transferase PJW04_17835 PF16363 GDP-mannose 4,6 dehydratase PJW04_17840 PF01012 Electron transfer flavoprotein domain PJW04_17845 PF00766 Electron transfer flavoprotein FAD-binding domain PJW04_17845 PF01012 Electron transfer flavoprotein domain PJW04_17855 PF01040 UbiA prenyltransferase family PJW04_17860 PF04030 D-arabinono-1,4-lactone oxidase PJW04_17860 PF01565 FAD binding domain PJW04_17865 PF00106 short chain dehydrogenase PJW04_17870 PF01370 NAD dependent epimerase/dehydratase family PJW04_17875 PF01593 Flavin containing amine oxidoreductase PJW04_17895 PF05045 Rhamnan synthesis protein F PJW04_17895 PF14307 Glycosyltransferase WbsX PJW04_17900 PF00005 ABC transporter PJW04_17910 PF01053 Cys/Met metabolism PLP-dependent enzyme PJW04_17915 PF00291 Pyridoxal-phosphate dependent enzyme PJW04_17915 PF00571 CBS domain PJW04_17935 PF00437 Type II/IV secretion system protein PJW04_17940 PF14497 Glutathione S-transferase, C-terminal domain PJW04_17940 PF02798 Glutathione S-transferase, N-terminal domain PJW04_17950 PF00271 Helicase conserved C-terminal domain PJW04_17950 PF00270 DEAD/DEAH box helicase PJW04_17955 PF01242 6-pyruvoyl tetrahydropterin synthase PJW04_17970 PF13185 GAF domain PJW04_17980 PF13419 Haloacid dehalogenase-like hydrolase PJW04_17985 PF00817 impB/mucB/samB family PJW04_17985 PF11799 impB/mucB/samB family C-terminal domain PJW04_17990 PF07977 FabA-like domain PJW04_17995 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_17995 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_18005 PF01432 Peptidase family M3 PJW04_18020 PF00394 Multicopper oxidase PJW04_18020 PF07732 Multicopper oxidase PJW04_18020 PF07731 Multicopper oxidase PJW04_18025 PF05275 Copper resistance protein B precursor (CopB) PJW04_18030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PJW04_18055 PF01380 SIS domain PJW04_18060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_18065 PF00005 ABC transporter PJW04_18070 PF12704 MacB-like periplasmic core domain PJW04_18070 PF02687 FtsX-like permease family PJW04_18075 PF02687 FtsX-like permease family PJW04_18075 PF12704 MacB-like periplasmic core domain PJW04_18085 PF00072 Response regulator receiver domain PJW04_18085 PF02954 Bacterial regulatory protein, Fis family PJW04_18085 PF00158 Sigma-54 interaction domain PJW04_18090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_18090 PF00512 His Kinase A (phospho-acceptor) domain PJW04_18095 PF00132 Bacterial transferase hexapeptide (six repeats) PJW04_18095 PF14602 Hexapeptide repeat of succinyl-transferase PJW04_18095 PF12804 MobA-like NTP transferase domain PJW04_18105 PF01817 Chorismate mutase type II PJW04_18115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PJW04_18115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PJW04_18120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJW04_18120 PF02874 ATP synthase alpha/beta family, beta-barrel domain PJW04_18125 PF00231 ATP synthase PJW04_18130 PF02874 ATP synthase alpha/beta family, beta-barrel domain PJW04_18130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJW04_18130 PF00306 ATP synthase alpha/beta chain, C terminal domain PJW04_18135 PF00213 ATP synthase delta (OSCP) subunit PJW04_18140 PF00430 ATP synthase B/B' CF(0) PJW04_18145 PF00137 ATP synthase subunit C PJW04_18150 PF00119 ATP synthase A chain PJW04_18170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PJW04_18170 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_18180 PF00364 Biotin-requiring enzyme PJW04_18180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PJW04_18180 PF02817 e3 binding domain PJW04_18210 PF03180 NLPA lipoprotein PJW04_18215 PF00528 Binding-protein-dependent transport system inner membrane component PJW04_18220 PF00005 ABC transporter PJW04_18220 PF09383 NIL domain PJW04_18225 PF00892 EamA-like transporter family PJW04_18230 PF04461 Protein of unknown function (DUF520) PJW04_18240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_18240 PF00512 His Kinase A (phospho-acceptor) domain PJW04_18240 PF18415 Histidine kinase receptor ArcB trans-membrane domain PJW04_18240 PF01627 Hpt domain PJW04_18240 PF00072 Response regulator receiver domain PJW04_18240 PF00989 PAS fold PJW04_18260 PF13419 Haloacid dehalogenase-like hydrolase PJW04_18265 PF00849 RNA pseudouridylate synthase PJW04_18265 PF01479 S4 domain PJW04_18270 PF05175 Methyltransferase small domain PJW04_18270 PF08468 Methyltransferase small domain N-terminal PJW04_18280 PF07995 Glucose / Sorbosone dehydrogenase PJW04_18290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_18290 PF00512 His Kinase A (phospho-acceptor) domain PJW04_18290 PF00989 PAS fold PJW04_18310 PF01168 Alanine racemase, N-terminal domain PJW04_18310 PF00842 Alanine racemase, C-terminal domain PJW04_18315 PF01266 FAD dependent oxidoreductase PJW04_18320 PF01037 Lrp/AsnC ligand binding domain PJW04_18330 PF01641 SelR domain PJW04_18340 PF01618 MotA/TolQ/ExbB proton channel family PJW04_18345 PF00691 OmpA family PJW04_18345 PF13677 Membrane MotB of proton-channel complex MotA/MotB PJW04_18370 PF01061 ABC-2 type transporter PJW04_18375 PF00005 ABC transporter PJW04_18380 PF00999 Sodium/hydrogen exchanger family PJW04_18385 PF02469 Fasciclin domain PJW04_18390 PF03167 Uracil DNA glycosylase superfamily PJW04_18400 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase PJW04_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_18405 PF03466 LysR substrate binding domain PJW04_18410 PF03358 NADPH-dependent FMN reductase PJW04_18415 PF00248 Aldo/keto reductase family PJW04_18425 PF05649 Peptidase family M13 PJW04_18425 PF01431 Peptidase family M13 PJW04_18440 PF13520 Amino acid permease PJW04_18450 PF00072 Response regulator receiver domain PJW04_18450 PF04397 LytTr DNA-binding domain PJW04_18455 PF06580 Histidine kinase PJW04_18455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_18455 PF00672 HAMP domain PJW04_18455 PF02743 Cache domain PJW04_18470 PF05974 Domain of unknown function (DUF892) PJW04_18475 PF05067 Manganese containing catalase PJW04_18490 PF01339 CheB methylesterase PJW04_18490 PF01739 CheR methyltransferase, SAM binding domain PJW04_18490 PF03705 CheR methyltransferase, all-alpha domain PJW04_18490 PF08448 PAS fold PJW04_18505 PF00158 Sigma-54 interaction domain PJW04_18505 PF00072 Response regulator receiver domain PJW04_18505 PF02954 Bacterial regulatory protein, Fis family PJW04_18515 PF01654 Cytochrome bd terminal oxidase subunit I PJW04_18520 PF02322 Cytochrome bd terminal oxidase subunit II PJW04_18540 PF16363 GDP-mannose 4,6 dehydratase PJW04_18550 PF03275 UDP-galactopyranose mutase PJW04_18560 PF00005 ABC transporter PJW04_18560 PF00664 ABC transporter transmembrane region PJW04_18575 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_18575 PF13823 Alcohol dehydrogenase GroES-associated PJW04_18575 PF00107 Zinc-binding dehydrogenase PJW04_18620 PF07715 TonB-dependent Receptor Plug Domain PJW04_18620 PF00593 TonB dependent receptor PJW04_18640 PF00005 ABC transporter PJW04_18650 PF03466 LysR substrate binding domain PJW04_18650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_18655 PF01042 Endoribonuclease L-PSP PJW04_18675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_18675 PF03466 LysR substrate binding domain PJW04_18680 PF02525 Flavodoxin-like fold PJW04_18710 PF01740 STAS domain PJW04_18710 PF00916 Sulfate permease family PJW04_18715 PF00654 Voltage gated chloride channel PJW04_18725 PF00557 Metallopeptidase family M24 PJW04_18735 PF03466 LysR substrate binding domain PJW04_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_18750 PF01494 FAD binding domain PJW04_18755 PF01494 FAD binding domain PJW04_18770 PF01555 DNA methylase PJW04_18845 PF03421 YopJ Serine/Threonine acetyltransferase PJW04_19020 PF04546 Sigma-70, non-essential region PJW04_19020 PF04542 Sigma-70 region 2 PJW04_19020 PF04539 Sigma-70 region 3 PJW04_19020 PF04545 Sigma-70, region 4 PJW04_19020 PF03979 Sigma-70 factor, region 1.1 PJW04_19020 PF00140 Sigma-70 factor, region 1.2 PJW04_19025 PF02580 D-Tyr-tRNA(Tyr) deacylase PJW04_19030 PF03279 Bacterial lipid A biosynthesis acyltransferase PJW04_19040 PF00925 GTP cyclohydrolase II PJW04_19060 PF00535 Glycosyl transferase family 2 PJW04_19075 PF01189 16S rRNA methyltransferase RsmB/F PJW04_19075 PF01029 NusB family PJW04_19080 PF02911 Formyl transferase, C-terminal domain PJW04_19080 PF00551 Formyl transferase PJW04_19085 PF01327 Polypeptide deformylase PJW04_19090 PF01476 LysM domain PJW04_19095 PF02481 DNA recombination-mediator protein A PJW04_19095 PF17782 DprA winged helix domain PJW04_19100 PF04361 Protein of unknown function (DUF494) PJW04_19105 PF07963 Prokaryotic N-terminal methylation motif PJW04_19105 PF00114 Pilin (bacterial filament) PJW04_19115 PF01131 DNA topoisomerase PJW04_19115 PF01751 Toprim domain PJW04_19115 PF13368 Topoisomerase C-terminal repeat PJW04_19120 PF01300 Telomere recombination PJW04_19145 PF01343 Peptidase family S49 PJW04_19150 PF01554 MatE PJW04_19170 PF00270 DEAD/DEAH box helicase PJW04_19170 PF17764 3′ DNA-binding domain (3′BD) PJW04_19170 PF18074 Primosomal protein N C-terminal domain PJW04_19170 PF18319 PriA DNA helicase Cys-rich region (CRR) domain PJW04_19170 PF00271 Helicase conserved C-terminal domain PJW04_19175 PF00043 Glutathione S-transferase, C-terminal domain PJW04_19175 PF13417 Glutathione S-transferase, N-terminal domain PJW04_19190 PF07992 Pyridine nucleotide-disulphide oxidoreductase PJW04_19195 PF03458 UPF0126 domain PJW04_19200 PF04545 Sigma-70, region 4 PJW04_19200 PF04542 Sigma-70 region 2 PJW04_19205 PF03167 Uracil DNA glycosylase superfamily PJW04_19210 PF00072 Response regulator receiver domain PJW04_19210 PF01339 CheB methylesterase PJW04_19215 PF18075 FtsX extracellular domain PJW04_19220 PF00005 ABC transporter PJW04_19225 PF00271 Helicase conserved C-terminal domain PJW04_19225 PF12300 ATP-dependent RNA helicase RhlB PJW04_19225 PF00270 DEAD/DEAH box helicase PJW04_19230 PF00085 Thioredoxin PJW04_19235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PJW04_19235 PF07498 Rho termination factor, N-terminal domain PJW04_19235 PF07497 Rho termination factor, RNA-binding domain PJW04_19245 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) PJW04_19250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_19250 PF03466 LysR substrate binding domain PJW04_19260 PF03971 Monomeric isocitrate dehydrogenase PJW04_19270 PF04972 BON domain PJW04_19270 PF01476 LysM domain PJW04_19275 PF14489 QueF-like protein PJW04_19275 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term PJW04_19280 PF07687 Peptidase dimerisation domain PJW04_19280 PF01546 Peptidase family M20/M25/M40 PJW04_19285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_19290 PF00873 AcrB/AcrD/AcrF family PJW04_19295 PF00873 AcrB/AcrD/AcrF family PJW04_19300 PF07063 Domain of unknown function (DUF1338) PJW04_19340 PF01427 D-ala-D-ala dipeptidase PJW04_19345 PF01510 N-acetylmuramoyl-L-alanine amidase PJW04_19355 PF13378 Enolase C-terminal domain-like PJW04_19355 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PJW04_19365 PF13520 Amino acid permease PJW04_19385 PF07995 Glucose / Sorbosone dehydrogenase PJW04_19390 PF14310 Fibronectin type III-like domain PJW04_19390 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_19390 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJW04_19395 PF02152 Dihydroneopterin aldolase PJW04_19400 PF00814 Glycoprotease family PJW04_19405 PF01165 Ribosomal protein S21 PJW04_19410 PF09424 Yqey-like protein PJW04_19420 PF03631 Virulence factor BrkB PJW04_19425 PF10410 DnaB-helicase binding domain of primase PJW04_19425 PF08278 DNA primase DnaG DnaB-binding PJW04_19425 PF08275 DNA primase catalytic core, N-terminal domain PJW04_19425 PF01807 CHC2 zinc finger PJW04_19430 PF13593 SBF-like CPA transporter family (DUF4137) PJW04_19440 PF01040 UbiA prenyltransferase family PJW04_19465 PF00510 Cytochrome c oxidase subunit III PJW04_19470 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 PJW04_19480 PF00115 Cytochrome C and Quinol oxidase polypeptide I PJW04_19485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain PJW04_19485 PF02790 Cytochrome C oxidase subunit II, transmembrane domain PJW04_19495 PF00171 Aldehyde dehydrogenase family PJW04_19495 PF01619 Proline dehydrogenase PJW04_19495 PF14850 DNA-binding domain of Proline dehydrogenase PJW04_19495 PF18327 Proline utilization A proline dehydrogenase N-terminal domain PJW04_19525 PF00579 tRNA synthetases class I (W and Y) PJW04_19530 PF04225 Opacity-associated protein A LysM-like domain PJW04_19530 PF01551 Peptidase family M23 PJW04_19535 PF03702 Anhydro-N-acetylmuramic acid kinase PJW04_19545 PF07690 Major Facilitator Superfamily PJW04_19550 PF03372 Endonuclease/Exonuclease/phosphatase family PJW04_19555 PF00156 Phosphoribosyl transferase domain PJW04_19565 PF13614 AAA domain PJW04_19570 PF17762 HTH domain found in ParB protein PJW04_19570 PF02195 ParB-like nuclease domain PJW04_19580 PF01370 NAD dependent epimerase/dehydratase family PJW04_19585 PF00535 Glycosyl transferase family 2 PJW04_19600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PJW04_19600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PJW04_19600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PJW04_19600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PJW04_19605 PF00692 dUTPase PJW04_19610 PF04127 DNA / pantothenate metabolism flavoprotein PJW04_19610 PF02441 Flavoprotein PJW04_19615 PF04002 RadC-like JAB domain PJW04_19620 PF03485 Arginyl tRNA synthetase N terminal domain PJW04_19620 PF05746 DALR anticodon binding domain PJW04_19620 PF00750 tRNA synthetases class I (R) PJW04_19635 PF00106 short chain dehydrogenase PJW04_19640 PF01757 Acyltransferase family PJW04_19645 PF03033 Glycosyltransferase family 28 N-terminal domain PJW04_19650 PF13193 AMP-binding enzyme C-terminal domain PJW04_19650 PF00975 Thioesterase domain PJW04_19650 PF00550 Phosphopantetheine attachment site PJW04_19650 PF00668 Condensation domain PJW04_19650 PF00668 Condensation domain PJW04_19650 PF00501 AMP-binding enzyme PJW04_19650 PF00975 Thioesterase domain PJW04_19650 PF00550 Phosphopantetheine attachment site PJW04_19650 PF13193 AMP-binding enzyme C-terminal domain PJW04_19650 PF00501 AMP-binding enzyme PJW04_19660 PF17810 Arginine decarboxylase helical bundle domain PJW04_19660 PF17944 Arginine decarboxylase C-terminal helical extension PJW04_19660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PJW04_19665 PF17284 Spermidine synthase tetramerisation domain PJW04_19685 PF00963 Cohesin domain PJW04_19685 PF00754 F5/8 type C domain PJW04_19685 PF02838 Glycosyl hydrolase family 20, domain 2 PJW04_19685 PF07555 beta-N-acetylglucosaminidase PJW04_19685 PF00041 Fibronectin type III domain PJW04_19690 PF00543 Nitrogen regulatory protein P-II PJW04_19695 PF04380 Membrane fusogenic activity PJW04_19700 PF13335 Magnesium chelatase, subunit ChlI C-terminal PJW04_19700 PF01078 Magnesium chelatase, subunit ChlI PJW04_19715 PF00563 EAL domain PJW04_19715 PF12792 CSS motif domain associated with EAL PJW04_19720 PF00487 Fatty acid desaturase PJW04_19725 PF00175 Oxidoreductase NAD-binding domain PJW04_19725 PF00111 2Fe-2S iron-sulfur cluster binding domain PJW04_19725 PF00970 Oxidoreductase FAD-binding domain PJW04_19730 PF00440 Bacterial regulatory proteins, tetR family PJW04_19740 PF01139 tRNA-splicing ligase RtcB PJW04_19780 PF08338 Domain of unknown function (DUF1731) PJW04_19780 PF01370 NAD dependent epimerase/dehydratase family PJW04_19785 PF00486 Transcriptional regulatory protein, C terminal PJW04_19785 PF00072 Response regulator receiver domain PJW04_19790 PF08521 Two-component sensor kinase N-terminal PJW04_19790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_19790 PF00512 His Kinase A (phospho-acceptor) domain PJW04_19810 PF00595 PDZ domain PJW04_19830 PF01594 AI-2E family transporter PJW04_19835 PF13419 Haloacid dehalogenase-like hydrolase PJW04_19840 PF02789 Cytosol aminopeptidase family, N-terminal domain PJW04_19840 PF00883 Cytosol aminopeptidase family, catalytic domain PJW04_19850 PF08281 Sigma-70, region 4 PJW04_19850 PF04542 Sigma-70 region 2 PJW04_19855 PF00199 Catalase PJW04_19870 PF00072 Response regulator receiver domain PJW04_19870 PF00196 Bacterial regulatory proteins, luxR family PJW04_19875 PF07730 Histidine kinase PJW04_19880 PF13533 Biotin-lipoyl like PJW04_19885 PF00005 ABC transporter PJW04_19905 PF00892 EamA-like transporter family PJW04_19910 PF00892 EamA-like transporter family PJW04_19925 PF00753 Metallo-beta-lactamase superfamily PJW04_19930 PF00579 tRNA synthetases class I (W and Y) PJW04_19935 PF05532 CsbD-like PJW04_19950 PF00491 Arginase family PJW04_19975 PF02223 Thymidylate kinase PJW04_19990 PF03309 Type III pantothenate kinase PJW04_19995 PF08279 HTH domain PJW04_19995 PF03099 Biotin/lipoate A/B protein ligase family PJW04_19995 PF02237 Biotin protein ligase C terminal domain PJW04_20005 PF06167 Glucose-regulated metallo-peptidase M90 PJW04_20020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_20025 PF00486 Transcriptional regulatory protein, C terminal PJW04_20025 PF00072 Response regulator receiver domain PJW04_20035 PF01207 Dihydrouridine synthase (Dus) PJW04_20050 PF00199 Catalase PJW04_20050 PF06628 Catalase-related immune-responsive PJW04_20055 PF13307 Helicase C-terminal domain PJW04_20055 PF06733 DEAD_2 PJW04_20070 PF18317 Shikimate 5'-dehydrogenase C-terminal domain PJW04_20070 PF01488 Shikimate / quinate 5-dehydrogenase PJW04_20070 PF08501 Shikimate dehydrogenase substrate binding domain PJW04_20080 PF00175 Oxidoreductase NAD-binding domain PJW04_20080 PF00667 FAD binding domain PJW04_20080 PF00258 Flavodoxin PJW04_20090 PF00490 Delta-aminolevulinic acid dehydratase PJW04_20115 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region PJW04_20115 PF00326 Prolyl oligopeptidase family PJW04_20120 PF00043 Glutathione S-transferase, C-terminal domain PJW04_20120 PF02798 Glutathione S-transferase, N-terminal domain PJW04_20140 PF04820 Tryptophan halogenase PJW04_20155 PF00005 ABC transporter PJW04_20165 PF01381 Helix-turn-helix PJW04_20175 PF01229 Glycosyl hydrolases family 39 PJW04_20180 PF02583 Metal-sensitive transcriptional repressor PJW04_20185 PF01545 Cation efflux family PJW04_20190 PF00175 Oxidoreductase NAD-binding domain PJW04_20190 PF01383 CpcD/allophycocyanin linker domain PJW04_20195 PF00005 ABC transporter PJW04_20200 PF01061 ABC-2 type transporter PJW04_20205 PF08546 Ketopantoate reductase PanE/ApbA C terminal PJW04_20205 PF02558 Ketopantoate reductase PanE/ApbA PJW04_20230 PF00258 Flavodoxin PJW04_20235 PF00268 Ribonucleotide reductase, small chain PJW04_20240 PF00317 Ribonucleotide reductase, all-alpha domain PJW04_20240 PF02867 Ribonucleotide reductase, barrel domain PJW04_20240 PF03477 ATP cone domain PJW04_20250 PF13607 Succinyl-CoA ligase like flavodoxin domain PJW04_20250 PF13380 CoA binding domain PJW04_20250 PF00583 Acetyltransferase (GNAT) family PJW04_20255 PF01769 Divalent cation transporter PJW04_20255 PF03448 MgtE intracellular N domain PJW04_20255 PF00571 CBS domain PJW04_20260 PF00194 Eukaryotic-type carbonic anhydrase PJW04_20265 PF00999 Sodium/hydrogen exchanger family PJW04_20265 PF02254 TrkA-N domain PJW04_20270 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain PJW04_20270 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain PJW04_20275 PF00723 Glycosyl hydrolases family 15 PJW04_20290 PF05166 YcgL domain PJW04_20295 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_20295 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_20305 PF00535 Glycosyl transferase family 2 PJW04_20370 PF01553 Acyltransferase PJW04_20380 PF00550 Phosphopantetheine attachment site PJW04_20385 PF04820 Tryptophan halogenase PJW04_20415 PF01218 Coproporphyrinogen III oxidase PJW04_20425 PF01367 5'-3' exonuclease, C-terminal SAM fold PJW04_20425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PJW04_20425 PF00476 DNA polymerase family A PJW04_20425 PF01612 3'-5' exonuclease PJW04_20435 PF06812 ImpA, N-terminal, type VI secretion system PJW04_20455 PF00069 Protein kinase domain PJW04_20470 PF14331 ImcF-related N-terminal domain PJW04_20470 PF06744 Type VI secretion protein IcmF C-terminal PJW04_20470 PF06761 Intracellular multiplication and human macrophage-killing PJW04_20480 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE PJW04_20485 PF00248 Aldo/keto reductase family PJW04_20490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_20490 PF03466 LysR substrate binding domain PJW04_20505 PF04717 Type VI secretion system, phage-baseplate injector PJW04_20535 PF04542 Sigma-70 region 2 PJW04_20535 PF08281 Sigma-70, region 4 PJW04_20550 PF00328 Histidine phosphatase superfamily (branch 2) PJW04_20590 PF00004 ATPase family associated with various cellular activities (AAA) PJW04_20590 PF17871 AAA lid domain PJW04_20590 PF07724 AAA domain (Cdc48 subfamily) PJW04_20590 PF10431 C-terminal, D2-small domain, of ClpB protein PJW04_20600 PF05947 Type VI secretion system, TssF PJW04_20605 PF04965 Gene 25-like lysozyme PJW04_20610 PF07024 ImpE protein PJW04_20615 PF05638 Type VI secretion system effector, Hcp PJW04_20620 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath PJW04_20625 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 PJW04_20640 PF14602 Hexapeptide repeat of succinyl-transferase PJW04_20640 PF12464 Maltose acetyltransferase PJW04_20650 PF13361 UvrD-like helicase C-terminal domain PJW04_20650 PF00580 UvrD/REP helicase N-terminal domain PJW04_20665 PF13091 PLD-like domain PJW04_20665 PF13396 Phospholipase_D-nuclease N-terminal PJW04_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_20670 PF03466 LysR substrate binding domain PJW04_20675 PF03737 Aldolase/RraA PJW04_20680 PF04303 PrpF protein PJW04_20685 PF04909 Amidohydrolase PJW04_20690 PF00471 Ribosomal protein L33 PJW04_20695 PF00830 Ribosomal L28 family PJW04_20705 PF00873 AcrB/AcrD/AcrF family PJW04_20710 PF13533 Biotin-lipoyl like PJW04_20730 PF02527 rRNA small subunit methyltransferase G PJW04_20735 PF16655 PhoD-like phosphatase, N-terminal domain PJW04_20735 PF09423 PhoD-like phosphatase PJW04_20740 PF09423 PhoD-like phosphatase PJW04_20740 PF16655 PhoD-like phosphatase, N-terminal domain PJW04_20745 PF01648 4'-phosphopantetheinyl transferase superfamily PJW04_20750 PF04226 Transglycosylase associated protein PJW04_20760 PF03372 Endonuclease/Exonuclease/phosphatase family PJW04_20765 PF00474 Sodium:solute symporter family PJW04_20770 PF04341 Protein of unknown function, DUF485 PJW04_20780 PF16177 Acetyl-coenzyme A synthetase N-terminus PJW04_20780 PF00501 AMP-binding enzyme PJW04_20780 PF13193 AMP-binding enzyme C-terminal domain PJW04_20785 PF00196 Bacterial regulatory proteins, luxR family PJW04_20785 PF00072 Response regulator receiver domain PJW04_20810 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PJW04_20810 PF04616 Glycosyl hydrolases family 43 PJW04_20820 PF00248 Aldo/keto reductase family PJW04_20835 PF01557 Fumarylacetoacetate (FAA) hydrolase family PJW04_20840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PJW04_20840 PF13378 Enolase C-terminal domain-like PJW04_20845 PF05336 L-rhamnose mutarotase PJW04_20850 PF07690 Major Facilitator Superfamily PJW04_20855 PF09339 IclR helix-turn-helix domain PJW04_20855 PF01614 Bacterial transcriptional regulator PJW04_20860 PF02659 Putative manganese efflux pump PJW04_20865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_20865 PF00512 His Kinase A (phospho-acceptor) domain PJW04_20875 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain PJW04_20875 PF06165 Glycosyltransferase family 36 PJW04_20890 PF13360 PQQ-like domain PJW04_20890 PF01011 PQQ enzyme repeat PJW04_20890 PF13570 PQQ-like domain PJW04_20930 PF03527 RHS protein PJW04_20930 PF05593 RHS Repeat PJW04_20950 PF04357 TamB, inner membrane protein subunit of TAM complex PJW04_20955 PF01103 Surface antigen PJW04_20955 PF17243 POTRA domain TamA domain 1 PJW04_20960 PF07715 TonB-dependent Receptor Plug Domain PJW04_20960 PF00593 TonB dependent receptor PJW04_20965 PF13181 Tetratricopeptide repeat PJW04_20970 PF02092 Glycyl-tRNA synthetase beta subunit PJW04_20970 PF05746 DALR anticodon binding domain PJW04_20975 PF02091 Glycyl-tRNA synthetase alpha subunit PJW04_20980 PF00437 Type II/IV secretion system protein PJW04_20980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain PJW04_20990 PF00117 Glutamine amidotransferase class-I PJW04_20990 PF00958 GMP synthase C terminal domain PJW04_21000 PF00902 Sec-independent protein translocase protein (TatC) PJW04_21005 PF02416 mttA/Hcf106 family PJW04_21010 PF02416 mttA/Hcf106 family PJW04_21020 PF00762 Ferrochelatase PJW04_21025 PF12697 Alpha/beta hydrolase family PJW04_21040 PF04381 Putative exonuclease, RdgC PJW04_21045 PF01171 PP-loop family PJW04_21055 PF00356 Bacterial regulatory proteins, lacI family PJW04_21065 PF07477 Glycosyl hydrolase family 67 C-terminus PJW04_21065 PF07488 Glycosyl hydrolase family 67 middle domain PJW04_21065 PF03648 Glycosyl hydrolase family 67 N-terminus PJW04_21075 PF13378 Enolase C-terminal domain-like PJW04_21075 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PJW04_21080 PF04616 Glycosyl hydrolases family 43 PJW04_21080 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PJW04_21085 PF07691 PA14 domain PJW04_21085 PF01915 Glycosyl hydrolase family 3 C-terminal domain PJW04_21085 PF00933 Glycosyl hydrolase family 3 N terminal domain PJW04_21085 PF14310 Fibronectin type III-like domain PJW04_21090 PF08125 Mannitol dehydrogenase C-terminal domain PJW04_21090 PF01232 Mannitol dehydrogenase Rossmann domain PJW04_21125 PF00171 Aldehyde dehydrogenase family PJW04_21140 PF00202 Aminotransferase class-III PJW04_21150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain PJW04_21150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain PJW04_21165 PF08450 SMP-30/Gluconolactonase/LRE-like region PJW04_21170 PF00331 Glycosyl hydrolase family 10 PJW04_21175 PF02837 Glycosyl hydrolases family 2, sugar binding domain PJW04_21175 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PJW04_21175 PF00703 Glycosyl hydrolases family 2 PJW04_21175 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 PJW04_21175 PF16355 Domain of unknown function (DUF4982) PJW04_21180 PF02614 Glucuronate isomerase PJW04_21185 PF00331 Glycosyl hydrolase family 10 PJW04_21185 PF03422 Carbohydrate binding module (family 6) PJW04_21185 PF00553 Cellulose binding domain PJW04_21200 PF00553 Cellulose binding domain PJW04_21200 PF03422 Carbohydrate binding module (family 6) PJW04_21200 PF00331 Glycosyl hydrolase family 10 PJW04_21220 PF04616 Glycosyl hydrolases family 43 PJW04_21250 PF00698 Acyl transferase domain PJW04_21250 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_21250 PF00107 Zinc-binding dehydrogenase PJW04_21250 PF00109 Beta-ketoacyl synthase, N-terminal domain PJW04_21250 PF16197 Ketoacyl-synthetase C-terminal extension PJW04_21250 PF08659 KR domain PJW04_21250 PF00550 Phosphopantetheine attachment site PJW04_21250 PF14765 Polyketide synthase dehydratase PJW04_21250 PF02801 Beta-ketoacyl synthase, C-terminal domain PJW04_21260 PF01553 Acyltransferase PJW04_21270 PF00356 Bacterial regulatory proteins, lacI family PJW04_21285 PF04820 Tryptophan halogenase PJW04_21290 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PJW04_21295 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) PJW04_21300 PF04337 Protein of unknown function, DUF480 PJW04_21315 PF13361 UvrD-like helicase C-terminal domain PJW04_21315 PF00580 UvrD/REP helicase N-terminal domain PJW04_21320 PF00265 Thymidine kinase PJW04_21325 PF00360 Phytochrome region PJW04_21325 PF08446 PAS fold PJW04_21325 PF00512 His Kinase A (phospho-acceptor) domain PJW04_21325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PJW04_21325 PF01590 GAF domain PJW04_21330 PF04349 Periplasmic glucan biosynthesis protein, MdoG PJW04_21340 PF06827 Zinc finger found in FPG and IleRS PJW04_21340 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PJW04_21340 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PJW04_21370 PF03594 Benzoate membrane transport protein PJW04_21375 PF01590 GAF domain PJW04_21375 PF13426 PAS domain PJW04_21375 PF00360 Phytochrome region PJW04_21375 PF08446 PAS fold PJW04_21380 PF01126 Heme oxygenase PJW04_21390 PF01263 Aldose 1-epimerase PJW04_21400 PF02810 SEC-C motif PJW04_21405 PF01925 Sulfite exporter TauE/SafE PJW04_21425 PF01227 GTP cyclohydrolase I PJW04_21435 PF07869 Protein of unknown function (DUF1656) PJW04_21440 PF00529 HlyD membrane-fusion protein of T1SS PJW04_21440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PJW04_21450 PF04632 Fusaric acid resistance protein family PJW04_21455 PF00083 Sugar (and other) transporter PJW04_21465 PF03466 LysR substrate binding domain PJW04_21465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_21470 PF00106 short chain dehydrogenase PJW04_21475 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family PJW04_21480 PF13396 Phospholipase_D-nuclease N-terminal PJW04_21480 PF13091 PLD-like domain PJW04_21535 PF00849 RNA pseudouridylate synthase PJW04_21560 PF13333 Integrase core domain PJW04_21560 PF00665 Integrase core domain PJW04_21560 PF13276 HTH-like domain PJW04_21565 PF13333 Integrase core domain PJW04_21565 PF13276 HTH-like domain PJW04_21565 PF00665 Integrase core domain PJW04_21585 PF00440 Bacterial regulatory proteins, tetR family PJW04_21625 PF01381 Helix-turn-helix PJW04_21635 PF13538 UvrD-like helicase C-terminal domain PJW04_21640 PF00580 UvrD/REP helicase N-terminal domain PJW04_21640 PF13361 UvrD-like helicase C-terminal domain PJW04_21640 PF12705 PD-(D/E)XK nuclease superfamily PJW04_21645 PF17946 RecC C-terminal domain PJW04_21680 PF00005 ABC transporter PJW04_21685 PF02405 Permease MlaE PJW04_21690 PF02470 MlaD protein PJW04_21695 PF05494 MlaC protein PJW04_21705 PF04333 MlaA lipoprotein PJW04_21715 PF00255 Glutathione peroxidase PJW04_21725 PF02646 RmuC family PJW04_21730 PF00107 Zinc-binding dehydrogenase PJW04_21730 PF08240 Alcohol dehydrogenase GroES-like domain PJW04_21735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PJW04_21735 PF03466 LysR substrate binding domain PJW04_21755 PF13520 Amino acid permease PJW04_21760 PF17678 Glycosyl hydrolase family 92 N-terminal domain PJW04_21760 PF07971 Glycosyl hydrolase family 92 PJW04_21765 PF07715 TonB-dependent Receptor Plug Domain PJW04_21765 PF00593 TonB dependent receptor PJW04_21770 PF10947 Protein of unknown function (DUF2628) PJW04_21775 PF00990 Diguanylate cyclase, GGDEF domain PJW04_21780 PF17853 GGDEF-like domain PJW04_21780 PF05651 Putative sugar diacid recognition PJW04_21780 PF13556 PucR C-terminal helix-turn-helix domain PJW04_21785 PF02595 Glycerate kinase family PJW04_21790 PF07690 Major Facilitator Superfamily PJW04_21805 PF10672 S-adenosylmethionine-dependent methyltransferase PJW04_21805 PF17785 PUA-like domain PJW04_21810 PF03741 Integral membrane protein TerC family PJW04_21815 PF01694 Rhomboid family PJW04_21820 PF03009 Glycerophosphoryl diester phosphodiesterase family PJW04_21830 PF01569 PAP2 superfamily PJW04_21835 PF01926 50S ribosome-binding GTPase PJW04_21835 PF10396 GTP-binding protein TrmE N-terminus PJW04_21835 PF12631 MnmE helical domain PJW04_21840 PF01522 Polysaccharide deacetylase PJW04_21850 PF02096 60Kd inner membrane protein PJW04_21850 PF14849 YidC periplasmic domain PJW04_21855 PF00825 Ribonuclease P PJW04_21860 PF00468 Ribosomal protein L34 PJW04_21900 PF02534 Type IV secretory system Conjugative DNA transfer PJW04_21930 PF00437 Type II/IV secretion system protein PJW04_21945 PF03135 CagE, TrbE, VirB family, component of type IV transporter system PJW04_21960 PF04610 TrbL/VirB6 plasmid conjugal transfer protein PJW04_21975 PF03743 Bacterial conjugation TrbI-like protein PJW04_21995 PF01131 DNA topoisomerase PJW04_21995 PF01751 Toprim domain PJW04_22045 PF09722 Protein of unknown function (DUF2384) PJW04_22045 PF01936 NYN domain PJW04_22065 PF03421 YopJ Serine/Threonine acetyltransferase PJW04_22170 PF00145 C-5 cytosine-specific DNA methylase PJW04_22220 PF13614 AAA domain PJW04_22225 PF02195 ParB-like nuclease domain PJW04_22270 PF00437 Type II/IV secretion system protein PJW04_22275 PF03743 Bacterial conjugation TrbI-like protein PJW04_22280 PF03524 Conjugal transfer protein PJW04_22285 PF04335 VirB8 protein PJW04_22295 PF04610 TrbL/VirB6 plasmid conjugal transfer protein PJW04_22305 PF07996 Type IV secretion system proteins PJW04_22310 PF03135 CagE, TrbE, VirB family, component of type IV transporter system PJW04_22315 PF03135 CagE, TrbE, VirB family, component of type IV transporter system PJW04_22320 PF05101 Type IV secretory pathway, VirB3-like protein PJW04_22325 PF04956 TrbC/VIRB2 family PJW04_22330 PF01396 Topoisomerase DNA binding C4 zinc finger PJW04_22330 PF01131 DNA topoisomerase PJW04_22330 PF01751 Toprim domain PJW04_22335 PF01464 Transglycosylase SLT domain PJW04_22380 PF17841 BID domain of Bartonella effector protein (Bep) PJW04_22380 PF02661 Fic/DOC family PJW04_22410 PF02796 Helix-turn-helix domain of resolvase PJW04_22410 PF00239 Resolvase, N terminal domain PJW04_22415 PF02796 Helix-turn-helix domain of resolvase PJW04_22415 PF00239 Resolvase, N terminal domain PJW04_22435 PF01526 Tn3 transposase DDE domain PJW04_22435 PF13700 Domain of unknown function (DUF4158) PJW04_22510 PF13614 AAA domain PJW04_22510 PF00376 MerR family regulatory protein PJW04_22515 PF02796 Helix-turn-helix domain of resolvase PJW04_22515 PF00239 Resolvase, N terminal domain