locus-tag	class	description
BJD13_00025	COG1475	DNA binding
BJD13_00060	COG0629	single-stranded DNA binding
BJD13_00090	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD13_00120	COG2963	transposase activity
BJD13_00125	COG2801	Transposase and inactivated derivatives
BJD13_00185	COG2132	Multicopper oxidase
BJD13_00220	COG0010	Belongs to the arginase family
BJD13_00225	COG2986	histidine ammonia-lyase
BJD13_00230	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD13_00235	COG2188	Transcriptional regulator
BJD13_00255	COG2871	sodium ion transport
BJD13_00285	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_00290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_00305	COG2217	Heavy metal translocating P-type atpase
BJD13_00310	COG2217	Heavy metal translocating P-type atpase
BJD13_00325	COG1063	alcohol dehydrogenase
BJD13_00410	COG0210	DNA helicase
BJD13_00415	COG4232	protein-disulfide reductase activity
BJD13_00490	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD13_00540	COG4644	lycopene metabolic process
BJD13_00900	COG1199	ATP-dependent helicase activity
BJD13_00910	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD13_00920	COG0745	RESPONSE REGULATOR receiver
BJD13_01000	COG1525	nuclease
BJD13_01135	COG3316	Transposase and inactivated derivatives
BJD13_01275	COG3316	Transposase and inactivated derivatives
BJD13_01315	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BJD13_01320	COG5599	Phosphatase
BJD13_01405	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD13_01420	COG0489	protein tyrosine kinase activity
BJD13_01490	COG4962	Type ii secretion system protein e
BJD13_01505	COG3451	type IV secretory pathway VirB4
BJD13_01515	COG3846	protein secretion by the type IV secretion system
BJD13_01550	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD13_01550	COG0551	DNA topoisomerase type I activity
BJD13_01590	COG0754	glutathionylspermidine amidase activity
BJD13_01595	COG2814	Major facilitator Superfamily
BJD13_01680	COG0531	amino acid
BJD13_01685	COG2197	response regulator
BJD13_01710	COG1113	amino acid transport
BJD13_01720	COG1271	oxidase subunit
BJD13_01725	COG1294	oxidase, subunit
BJD13_01735	COG2239	Acts as a magnesium transporter
BJD13_01745	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD13_01750	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_01760	COG1660	Displays ATPase and GTPase activities
BJD13_01765	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BJD13_01770	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_01785	COG1137	ATPase activity
BJD13_01790	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD13_01800	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD13_01810	COG0271	Belongs to the BolA IbaG family
BJD13_01815	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BJD13_01835	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD13_01845	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD13_01855	COG0628	permease
BJD13_01865	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD13_01885	COG1555	photosystem II stabilization
BJD13_01900	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_01905	COG1477	protein flavinylation
BJD13_01930	COG3128	pkhd-type hydroxylase
BJD13_01935	COG4774	siderophore transport
BJD13_01945	COG0456	acetyltransferase
BJD13_01950	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD13_01955	COG0719	Fe-S assembly protein
BJD13_01960	COG0396	ATPase activity
BJD13_01965	COG0719	Fe-S assembly protein
BJD13_01970	COG1959	2 iron, 2 sulfur cluster binding
BJD13_01980	COG0693	protein deglycase activity
BJD13_02000	COG0739	heme binding
BJD13_02015	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD13_02045	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_02055	COG1678	Uncharacterized ACR, COG1678
BJD13_02060	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD13_02065	COG0540	Belongs to the ATCase OTCase family
BJD13_02070	COG1764	response to oxidative stress
BJD13_02080	COG0384	phenazine biosynthesis protein PhzF
BJD13_02085	COG0384	phenazine biosynthesis protein PhzF
BJD13_02090	COG0527	aspartate kinase activity
BJD13_02105	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD13_02120	COG0142	geranyltranstransferase activity
BJD13_02125	COG0629	single-stranded DNA binding
BJD13_02130	COG3706	GGDEF domain
BJD13_02130	COG5001	Diguanylate cyclase
BJD13_02130	COG2203	Gaf domain
BJD13_02130	COG4251	negative regulation of phosphorylation
BJD13_02135	COG0604	alcohol dehydrogenase
BJD13_02135	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_02135	COG3321	synthase
BJD13_02140	COG2080	2 iron, 2 sulfur cluster binding
BJD13_02145	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD13_02150	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD13_02155	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BJD13_02205	COG2879	small protein
BJD13_02210	COG1966	Carbon starvation protein
BJD13_02215	COG1741	Belongs to the pirin family
BJD13_02230	COG1741	Belongs to the pirin family
BJD13_02245	COG1515	deoxyribonuclease V activity
BJD13_02250	COG0588	phosphoglycerate mutase activity
BJD13_02260	COG3590	peptidase
BJD13_02265	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_02270	COG2201	protein-glutamate methylesterase activity
BJD13_02275	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD13_02280	COG2202	Pas domain
BJD13_02280	COG2199	diguanylate cyclase activity
BJD13_02280	COG2200	EAL domain
BJD13_02285	COG0835	chemotaxis
BJD13_02290	COG0840	transmembrane signaling receptor activity
BJD13_02300	COG0643	Histidine kinase
BJD13_02300	COG2198	Histidine kinase
BJD13_02310	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD13_02320	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD13_02325	COG0745	RESPONSE REGULATOR receiver
BJD13_02330	COG2205	protein histidine kinase activity
BJD13_02345	COG4452	Inner membrane protein CreD
BJD13_02370	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_02375	COG0735	belongs to the Fur family
BJD13_02390	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_02395	COG1538	Outer membrane efflux protein
BJD13_02400	COG1309	transcriptional regulator
BJD13_02415	COG2207	Transcriptional regulator
BJD13_02425	COG0583	DNA-binding transcription factor activity
BJD13_02430	COG2814	Major facilitator Superfamily
BJD13_02435	COG0667	Aldo Keto reductase
BJD13_02550	COG5002	protein histidine kinase activity
BJD13_02550	COG5001	Diguanylate cyclase
BJD13_02555	COG1187	pseudouridine synthase activity
BJD13_02560	COG3706	GGDEF domain
BJD13_02580	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD13_02585	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BJD13_02590	COG0475	glutathione-regulated potassium exporter activity
BJD13_02595	COG5002	protein histidine kinase activity
BJD13_02595	COG5000	phosphorelay sensor kinase activity
BJD13_02600	COG0745	RESPONSE REGULATOR receiver
BJD13_02605	COG1538	Outer membrane efflux protein
BJD13_02635	COG1132	(ABC) transporter
BJD13_02675	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD13_02680	COG2155	Conserved Protein
BJD13_02710	COG3118	belongs to the thioredoxin family
BJD13_02720	COG0495	leucyl-tRNA aminoacylation
BJD13_02735	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD13_02750	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD13_02760	COG2968	Membrane
BJD13_02765	COG0424	maF-like protein
BJD13_02770	COG1530	ribonuclease E activity
BJD13_02775	COG3164	Protein of unknown function
BJD13_02785	COG0312	modulator of DNA gyrase
BJD13_02790	COG3028	Belongs to the UPF0307 family
BJD13_02795	COG0312	modulator of DNA gyrase
BJD13_02805	COG4104	PAAR repeat-containing protein
BJD13_02810	COG0142	geranyltranstransferase activity
BJD13_02815	COG1722	exodeoxyribonuclease VII activity
BJD13_02820	COG0037	tRNA processing
BJD13_02830	COG1785	Belongs to the alkaline phosphatase family
BJD13_02835	COG1301	dicarboxylic acid transport
BJD13_02850	COG0791	NLP P60 protein
BJD13_02855	COG0791	NLP P60 protein
BJD13_02860	COG1047	Peptidyl-prolyl cis-trans
BJD13_02865	COG2311	Membrane
BJD13_02870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_02875	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD13_02895	COG3590	peptidase
BJD13_02905	COG3590	peptidase
BJD13_02925	COG0489	protein tyrosine kinase activity
BJD13_02935	COG0717	Belongs to the dCTP deaminase family
BJD13_02960	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD13_02965	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_02980	COG0494	nUDIX hydrolase
BJD13_02985	COG0433	COG0433 Predicted ATPase
BJD13_02995	COG0688	phosphatidylethanolamine metabolic process
BJD13_03005	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD13_03010	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD13_03015	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD13_03020	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD13_03040	COG0101	tRNA pseudouridine synthase activity
BJD13_03045	COG0135	phosphoribosylanthranilate isomerase activity
BJD13_03055	COG0133	tryptophan synthase activity
BJD13_03065	COG0159	tryptophan synthase activity
BJD13_03070	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD13_03075	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD13_03110	COG4221	oxidoreductase activity
BJD13_03115	COG0149	triose-phosphate isomerase activity
BJD13_03130	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_03135	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_03140	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_03145	COG0649	NAD binding
BJD13_03150	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD13_03155	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD13_03160	COG1034	ATP synthesis coupled electron transport
BJD13_03165	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BJD13_03170	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD13_03180	COG0713	ATP synthesis coupled electron transport
BJD13_03195	COG1007	ATP synthesis coupled electron transport
BJD13_03205	COG0779	Required for maturation of 30S ribosomal subunits
BJD13_03210	COG0195	Participates in both transcription termination and antitermination
BJD13_03215	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD13_03220	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD13_03225	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD13_03230	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD13_03235	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD13_03265	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD13_03270	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD13_03280	COG2095	MarC family integral membrane protein
BJD13_03290	COG1611	Belongs to the LOG family
BJD13_03295	COG3275	phosphorelay sensor kinase activity
BJD13_03340	COG0556	nucleotide-excision repair
BJD13_03360	COG3505	Type IV secretory pathway VirD4
BJD13_03380	COG2948	multi-organism process
BJD13_03400	COG3702	type iv secretory pathway
BJD13_03455	COG2801	Transposase and inactivated derivatives
BJD13_03460	COG2963	transposase activity
BJD13_03465	COG0366	Alpha amylase catalytic
BJD13_03480	COG1082	Xylose isomerase domain protein TIM barrel
BJD13_03505	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD13_03510	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD13_03515	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BJD13_03520	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BJD13_03525	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD13_03530	COG0072	phenylalanine-tRNA ligase activity
BJD13_03530	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_03535	COG0776	regulation of translation
BJD13_03580	COG0438	transferase activity, transferring glycosyl groups
BJD13_03585	COG0438	transferase activity, transferring glycosyl groups
BJD13_03620	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_03625	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_03630	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_03650	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD13_03660	COG1960	acyl-CoA dehydrogenase activity
BJD13_03670	COG3040	lipid binding
BJD13_03685	COG0322	excinuclease ABC activity
BJD13_03700	COG0784	Response regulator, receiver
BJD13_03700	COG4191	Histidine kinase
BJD13_03705	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD13_03710	COG1194	a g-specific adenine glycosylase
BJD13_03720	COG0552	protein localization to endoplasmic reticulum
BJD13_03730	COG3938	Belongs to the proline racemase family
BJD13_03735	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_03750	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD13_03760	COG0006	proline dipeptidase activity
BJD13_03775	COG0531	amino acid
BJD13_03845	COG0326	Molecular chaperone. Has ATPase activity
BJD13_03850	COG0742	ribosomal rna small subunit methyltransferase
BJD13_03855	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD13_03870	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD13_03875	COG0405	Gamma-glutamyltransferase
BJD13_03885	COG3291	Pkd domain containing protein
BJD13_03890	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD13_03930	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD13_03935	COG0343	queuine tRNA-ribosyltransferase activity
BJD13_03940	COG1862	Preprotein translocase
BJD13_03950	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD13_03970	COG3039	Transposase
BJD13_04000	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD13_04000	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD13_04005	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD13_04010	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD13_04010	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD13_04015	COG1609	Transcriptional regulator
BJD13_04020	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_04025	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_04035	COG2902	Dehydrogenase
BJD13_04040	COG0477	Major facilitator Superfamily
BJD13_04050	COG2205	protein histidine kinase activity
BJD13_04050	COG0784	Response regulator, receiver
BJD13_04050	COG5002	protein histidine kinase activity
BJD13_04055	COG2733	membrane
BJD13_04080	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD13_04085	COG0243	molybdopterin cofactor binding
BJD13_04095	COG0477	Major facilitator Superfamily
BJD13_04100	COG2703	oxygen carrier activity
BJD13_04105	COG0745	RESPONSE REGULATOR receiver
BJD13_04105	COG3706	GGDEF domain
BJD13_04110	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_04115	COG0174	glutamine synthetase
BJD13_04120	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD13_04135	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD13_04155	COG3842	ATPase activity
BJD13_04165	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD13_04170	COG1177	transmembrane transport
BJD13_04180	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_04195	COG4535	Mg2 and Co2 transporter CorC
BJD13_04205	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD13_04215	COG1702	phosphate starvation-inducible protein PhoH
BJD13_04220	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD13_04235	COG0741	lytic transglycosylase activity
BJD13_04245	COG0723	plastoquinol--plastocyanin reductase activity
BJD13_04250	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD13_04255	COG2857	Cytochrome c1
BJD13_04260	COG0625	glutathione transferase activity
BJD13_04265	COG2969	positive regulation of protein catabolic process
BJD13_04285	COG1201	RNA secondary structure unwinding
BJD13_04290	COG2094	Belongs to the DNA glycosylase MPG family
BJD13_04295	COG0840	transmembrane signaling receptor activity
BJD13_04300	COG0835	chemotaxis
BJD13_04350	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD13_04365	COG1570	exodeoxyribonuclease VII activity
BJD13_04370	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD13_04375	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD13_04375	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD13_04380	COG0802	atpase or kinase
BJD13_04385	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD13_04390	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD13_04415	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_04420	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_04425	COG0501	Belongs to the peptidase M48B family
BJD13_04435	COG2081	HI0933 family
BJD13_04440	COG4681	YaeQ
BJD13_04450	COG0625	glutathione transferase activity
BJD13_04460	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD13_04465	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD13_04470	COG0513	Belongs to the DEAD box helicase family
BJD13_04495	COG0483	inositol monophosphate 1-phosphatase activity
BJD13_04510	COG3300	MHYT domain
BJD13_04510	COG5001	Diguanylate cyclase
BJD13_04515	COG1509	lysine 2,3-aminomutase activity
BJD13_04520	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD13_04530	COG0402	S-adenosylhomocysteine deaminase activity
BJD13_04535	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD13_04550	COG4677	pectinesterase activity
BJD13_04575	COG4302	ethanolamine ammonia-lyase activity
BJD13_04605	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD13_04610	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BJD13_04615	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD13_04625	COG2166	iron-sulfur cluster assembly
BJD13_04630	COG0215	cysteine-tRNA ligase activity
BJD13_04640	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD13_04645	COG0137	argininosuccinate synthase activity
BJD13_04660	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD13_04670	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD13_04675	COG0165	Argininosuccinate lyase
BJD13_04685	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BJD13_04690	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD13_04720	COG1294	oxidase, subunit
BJD13_04730	COG4988	ABC transporter
BJD13_04735	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD13_04740	COG1278	Cold shock
BJD13_04745	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_04765	COG1138	Cytochrome C-type biogenesis protein
BJD13_04770	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD13_04790	COG4133	protoheme IX ABC transporter activity
BJD13_04795	COG0436	Aminotransferase
BJD13_04815	COG1187	pseudouridine synthase activity
BJD13_04820	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD13_04825	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD13_04830	COG2350	Protein conserved in bacteria
BJD13_04865	COG0395	ABC-type sugar transport system, permease component
BJD13_04890	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD13_04895	COG2957	Belongs to the agmatine deiminase family
BJD13_04905	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BJD13_04910	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD13_04915	COG0539	negative regulation of cytoplasmic translation
BJD13_04920	COG0776	regulation of translation
BJD13_04930	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD13_04935	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD13_04945	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD13_04950	COG0475	glutathione-regulated potassium exporter activity
BJD13_04950	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD13_04960	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD13_04970	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_04970	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD13_04980	COG2818	Glycosylase
BJD13_04985	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_04995	COG0583	DNA-binding transcription factor activity
BJD13_05005	COG3002	Belongs to the UPF0753 family
BJD13_05010	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD13_05015	COG0583	DNA-binding transcription factor activity
BJD13_05025	COG0633	Ferredoxin
BJD13_05045	COG0583	DNA-binding transcription factor activity
BJD13_05065	COG2197	response regulator
BJD13_05070	COG4585	Histidine kinase
BJD13_05080	COG1335	isochorismatase
BJD13_05095	COG2814	Major facilitator Superfamily
BJD13_05115	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD13_05120	COG1321	iron dependent repressor
BJD13_05125	COG0590	tRNA wobble adenosine to inosine editing
BJD13_05130	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD13_05135	COG0668	transmembrane transport
BJD13_05145	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD13_05160	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_05165	COG1183	phosphatidylcholine synthase activity
BJD13_05175	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD13_05190	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_05190	COG0723	plastoquinol--plastocyanin reductase activity
BJD13_05200	COG2183	response to ionizing radiation
BJD13_05205	COG0784	Response regulator, receiver
BJD13_05205	COG2205	protein histidine kinase activity
BJD13_05275	COG0800	Aldolase
BJD13_05280	COG0129	dihydroxy-acid dehydratase activity
BJD13_05285	COG0363	glucosamine-6-phosphate deaminase activity
BJD13_05290	COG0837	glucose binding
BJD13_05295	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD13_05305	COG0354	folic acid binding
BJD13_05320	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD13_05335	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD13_05340	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD13_05350	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD13_05355	COG1136	(ABC) transporter
BJD13_05370	COG0811	peptide transport
BJD13_05380	COG1132	(ABC) transporter
BJD13_05385	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD13_05390	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD13_05395	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD13_05405	COG0322	excinuclease ABC activity
BJD13_05410	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD13_05475	COG0582	viral genome integration into host DNA
BJD13_05485	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD13_05515	COG1530	ribonuclease E activity
BJD13_05525	COG3064	Membrane
BJD13_05530	COG0428	transporter
BJD13_05540	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD13_05545	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD13_05545	COG0316	Belongs to the HesB IscA family
BJD13_05560	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_05565	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_05570	COG1309	transcriptional regulator
BJD13_05580	COG0596	Alpha beta hydrolase
BJD13_05605	COG0363	glucosamine-6-phosphate deaminase activity
BJD13_05620	COG2226	methyltransferase
BJD13_05620	COG1073	alpha beta
BJD13_05630	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_05660	COG0640	Transcriptional regulator
BJD13_05685	COG0653	protein targeting
BJD13_05700	COG0653	protein targeting
BJD13_05715	COG0653	protein targeting
BJD13_05795	COG2197	response regulator
BJD13_05800	COG4585	Histidine kinase
BJD13_05830	COG1858	cytochrome C peroxidase
BJD13_05860	COG0515	serine threonine protein kinase
BJD13_05865	COG0631	protein serine/threonine phosphatase activity
BJD13_05900	COG3501	Rhs element vgr protein
BJD13_06045	COG4566	intracellular signal transduction
BJD13_06055	COG5001	Diguanylate cyclase
BJD13_06070	COG3685	Protein conserved in bacteria
BJD13_06090	COG0243	molybdopterin cofactor binding
BJD13_06100	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD13_06105	COG2223	nitrite transmembrane transporter activity
BJD13_06110	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD13_06120	COG1648	precorrin-2 dehydrogenase activity
BJD13_06120	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD13_06145	COG0746	molybdenum cofactor guanylyltransferase activity
BJD13_06150	COG0303	'Molybdopterin
BJD13_06160	COG0708	Exodeoxyribonuclease III
BJD13_06200	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD13_06205	COG0303	'Molybdopterin
BJD13_06210	COG1160	GTP binding
BJD13_06215	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_06225	COG1426	Protein conserved in bacteria
BJD13_06235	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BJD13_06240	COG0105	UTP biosynthetic process
BJD13_06250	COG1024	Enoyl-CoA hydratase
BJD13_06250	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD13_06255	COG0183	Belongs to the thiolase family
BJD13_06260	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD13_06265	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD13_06280	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD13_06290	COG1674	ftsk spoiiie
BJD13_06295	COG0492	ferredoxin-NADP+ reductase activity
BJD13_06310	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BJD13_06315	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD13_06320	COG0542	response to heat
BJD13_06325	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BJD13_06335	COG0482	sulfurtransferase activity
BJD13_06340	COG2915	High frequency lysogenization protein hflD homolog
BJD13_06375	COG5002	protein histidine kinase activity
BJD13_06400	COG0835	chemotaxis
BJD13_06400	COG0784	Response regulator, receiver
BJD13_06410	COG1558	bacterial-type flagellum-dependent cell motility
BJD13_06415	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD13_06420	COG1749	Flagellar hook protein flgE
BJD13_06425	COG4787	bacterial-type flagellum-dependent cell motility
BJD13_06435	COG4786	Flagellar basal body rod
BJD13_06440	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
BJD13_06445	COG1706	bacterial-type flagellum-dependent cell motility
BJD13_06450	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD13_06450	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD13_06460	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD13_06465	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD13_06470	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD13_06500	COG2201	protein-glutamate methylesterase activity
BJD13_06505	COG2204	response regulator
BJD13_06520	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_06525	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_06530	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_06565	COG1677	Flagellar hook-basal body complex protein FliE
BJD13_06615	COG3190	flagellar
BJD13_06630	COG1987	bacterial-type flagellum assembly
BJD13_06635	COG1684	flagellar biosynthetic protein fliR
BJD13_06640	COG3300	MHYT domain
BJD13_06640	COG5001	Diguanylate cyclase
BJD13_06650	COG3300	MHYT domain
BJD13_06650	COG5001	Diguanylate cyclase
BJD13_06675	COG0455	bacterial-type flagellum organization
BJD13_06695	COG0643	Histidine kinase
BJD13_06695	COG2198	Histidine kinase
BJD13_06715	COG2963	transposase activity
BJD13_06750	COG2963	transposase activity
BJD13_06755	COG2801	Transposase and inactivated derivatives
BJD13_06780	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD13_06785	COG1360	Flagellar Motor Protein
BJD13_06790	COG1192	Involved in chromosome partitioning
BJD13_06795	COG0835	chemotaxis
BJD13_06805	COG0745	RESPONSE REGULATOR receiver
BJD13_06820	COG0840	transmembrane signaling receptor activity
BJD13_06830	COG0840	transmembrane signaling receptor activity
BJD13_06835	COG0840	transmembrane signaling receptor activity
BJD13_06845	COG0840	transmembrane signaling receptor activity
BJD13_06850	COG0840	transmembrane signaling receptor activity
BJD13_06855	COG0840	transmembrane signaling receptor activity
BJD13_06860	COG0840	transmembrane signaling receptor activity
BJD13_06870	COG0840	transmembrane signaling receptor activity
BJD13_06880	COG0840	transmembrane signaling receptor activity
BJD13_06885	COG0840	transmembrane signaling receptor activity
BJD13_06905	COG0835	chemotaxis
BJD13_06915	COG0840	transmembrane signaling receptor activity
BJD13_06925	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD13_06930	COG2201	protein-glutamate methylesterase activity
BJD13_06940	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_06970	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_06975	COG1024	Enoyl-CoA hydratase
BJD13_06980	COG2205	protein histidine kinase activity
BJD13_06980	COG0784	Response regulator, receiver
BJD13_06980	COG2198	Histidine kinase
BJD13_06995	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD13_07000	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD13_07005	COG3279	Response regulator of the LytR AlgR family
BJD13_07015	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD13_07025	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_07030	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD13_07040	COG0505	Belongs to the CarA family
BJD13_07045	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BJD13_07055	COG2258	MOSC domain
BJD13_07060	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD13_07105	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD13_07125	COG0277	FAD linked oxidase domain protein
BJD13_07130	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD13_07140	COG0531	amino acid
BJD13_07145	COG0531	amino acid
BJD13_07150	COG0235	Class ii aldolase
BJD13_07155	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD13_07160	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD13_07175	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD13_07175	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD13_07180	COG0107	imidazoleglycerol-phosphate synthase activity
BJD13_07185	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD13_07190	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD13_07195	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD13_07195	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD13_07200	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_07205	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD13_07210	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD13_07220	COG0124	histidyl-tRNA synthetase
BJD13_07225	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_07235	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD13_07250	COG0460	homoserine dehydrogenase
BJD13_07250	COG0527	aspartate kinase activity
BJD13_07255	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
BJD13_07270	COG2963	transposase activity
BJD13_07275	COG2801	Transposase and inactivated derivatives
BJD13_07365	COG2814	Major facilitator Superfamily
BJD13_07430	COG0210	DNA helicase
BJD13_07500	COG2003	Belongs to the UPF0758 family
BJD13_07525	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_07545	COG0167	dihydroorotate dehydrogenase activity
BJD13_07550	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD13_07560	COG1794	racemase activity, acting on amino acids and derivatives
BJD13_07570	COG0671	phosphoesterase, PA-phosphatase related
BJD13_07575	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD13_07585	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD13_07590	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_07600	COG4251	negative regulation of phosphorylation
BJD13_07600	COG5001	Diguanylate cyclase
BJD13_07600	COG3706	GGDEF domain
BJD13_07600	COG2203	Gaf domain
BJD13_07615	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_07640	COG0166	Belongs to the GPI family
BJD13_07645	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD13_07650	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BJD13_07655	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD13_07675	COG1469	GTP cyclohydrolase I activity
BJD13_07680	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD13_07695	COG0477	Major facilitator Superfamily
BJD13_07700	COG2115	Belongs to the xylose isomerase family
BJD13_07705	COG1070	Carbohydrate kinase
BJD13_07715	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD13_07760	COG0800	Aldolase
BJD13_07765	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_07775	COG3734	2-keto-3-deoxy-galactonokinase
BJD13_07780	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD13_07790	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD13_07805	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD13_07810	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD13_07825	COG0351	phosphomethylpyrimidine kinase
BJD13_07850	COG0583	DNA-binding transcription factor activity
BJD13_07860	COG1741	Belongs to the pirin family
BJD13_07880	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD13_07885	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD13_07890	COG2137	regulation of response to DNA damage stimulus
BJD13_07900	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD13_07905	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD13_07915	COG1546	Belongs to the CinA family
BJD13_07920	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD13_07925	COG1923	regulation of RNA biosynthetic process
BJD13_07930	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD13_07935	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD13_07940	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD13_07945	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD13_07950	COG1534	Rna-binding protein
BJD13_07965	COG1238	metal cluster binding
BJD13_07970	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD13_07975	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD13_07980	COG2840	Smr protein MutS2
BJD13_07985	COG0585	pseudouridine synthase activity
BJD13_07990	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD13_07995	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BJD13_08000	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD13_08005	COG0148	phosphopyruvate hydratase activity
BJD13_08020	COG0504	CTP synthase activity
BJD13_08045	COG0306	phosphate transporter
BJD13_08060	COG1253	flavin adenine dinucleotide binding
BJD13_08075	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD13_08080	COG2271	Major facilitator Superfamily
BJD13_08085	COG1132	(ABC) transporter
BJD13_08090	COG1136	(ABC) transporter
BJD13_08110	COG0438	transferase activity, transferring glycosyl groups
BJD13_08120	COG2264	protein methyltransferase activity
BJD13_08150	COG2244	polysaccharide biosynthetic process
BJD13_08205	COG1595	DNA-templated transcription, initiation
BJD13_08220	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD13_08230	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD13_08240	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_08255	COG4191	Histidine kinase
BJD13_08255	COG0784	Response regulator, receiver
BJD13_08260	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD13_08270	COG0784	Response regulator, receiver
BJD13_08270	COG2205	protein histidine kinase activity
BJD13_08270	COG5002	protein histidine kinase activity
BJD13_08300	COG0840	transmembrane signaling receptor activity
BJD13_08315	COG0583	DNA-binding transcription factor activity
BJD13_08320	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD13_08325	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD13_08340	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD13_08345	COG0077	Prephenate dehydratase
BJD13_08345	COG1605	Chorismate mutase
BJD13_08350	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD13_08355	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD13_08360	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD13_08400	COG1228	amidohydrolase
BJD13_08405	COG2986	histidine ammonia-lyase
BJD13_08415	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD13_08425	COG4993	Dehydrogenase
BJD13_08435	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD13_08450	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD13_08455	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD13_08460	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_08470	COG3115	cell septum assembly
BJD13_08480	COG0359	binds to the 23S rRNA
BJD13_08485	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BJD13_08490	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD13_08495	COG0316	Belongs to the HesB IscA family
BJD13_08505	COG0017	Asparaginyl-tRNA synthetase
BJD13_08575	COG0288	reversible hydration of carbon dioxide
BJD13_08580	COG0662	Cupin 2, conserved barrel domain protein
BJD13_08590	COG3844	kynureninase activity
BJD13_08595	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_08605	COG2925	Exonuclease
BJD13_08615	COG0667	Aldo Keto reductase
BJD13_08630	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD13_08635	COG0116	Belongs to the methyltransferase superfamily
BJD13_08635	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD13_08680	COG0494	nUDIX hydrolase
BJD13_08690	COG1024	Enoyl-CoA hydratase
BJD13_08700	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD13_08705	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_08730	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD13_08735	COG0573	inorganic phosphate transmembrane transporter activity
BJD13_08740	COG0581	inorganic phosphate transmembrane transporter activity
BJD13_08745	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD13_08750	COG0704	Plays a role in the regulation of phosphate uptake
BJD13_08760	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD13_08765	COG3706	GGDEF domain
BJD13_08775	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD13_08785	COG0557	exoribonuclease II activity
BJD13_08815	COG1960	acyl-CoA dehydrogenase activity
BJD13_08825	COG1410	methionine synthase
BJD13_08825	COG0646	methionine synthase
BJD13_08830	COG1410	methionine synthase
BJD13_08830	COG0646	methionine synthase
BJD13_08840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_08865	COG2900	Belongs to the SlyX family
BJD13_08880	COG0386	Belongs to the glutathione peroxidase family
BJD13_08890	COG1725	Transcriptional regulator
BJD13_08895	COG1131	(ABC) transporter
BJD13_08925	COG1253	flavin adenine dinucleotide binding
BJD13_08945	COG2850	peptidyl-arginine hydroxylation
BJD13_08980	COG1132	(ABC) transporter
BJD13_08985	COG0583	DNA-binding transcription factor activity
BJD13_09015	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD13_09020	COG0484	heat shock protein binding
BJD13_09025	COG0443	Heat shock 70 kDa protein
BJD13_09030	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD13_09035	COG1420	regulation of RNA biosynthetic process
BJD13_09040	COG0497	DNA recombination
BJD13_09050	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_09065	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD13_09100	COG3706	GGDEF domain
BJD13_09110	COG3706	GGDEF domain
BJD13_09145	COG0583	DNA-binding transcription factor activity
BJD13_09160	COG0415	Belongs to the DNA photolyase family
BJD13_09165	COG0305	Participates in initiation and elongation during chromosome replication
BJD13_09175	COG0367	asparagine synthase
BJD13_09195	COG1960	acyl-CoA dehydrogenase activity
BJD13_09210	COG0084	hydrolase, TatD family'
BJD13_09215	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD13_09275	COG0386	Belongs to the glutathione peroxidase family
BJD13_09280	COG0339	signal peptide processing
BJD13_09340	COG2814	Major facilitator Superfamily
BJD13_09345	COG1566	PFAM secretion protein HlyD family protein
BJD13_09370	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD13_09385	COG4774	siderophore transport
BJD13_09395	COG0367	asparagine synthase
BJD13_09400	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD13_09405	COG1393	Belongs to the ArsC family
BJD13_09415	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD13_09420	COG0024	Methionine aminopeptidase
BJD13_09455	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD13_09460	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD13_09465	COG0745	RESPONSE REGULATOR receiver
BJD13_09465	COG3706	GGDEF domain
BJD13_09470	COG0528	UMP kinase activity
BJD13_09475	COG0233	cytoplasmic translational termination
BJD13_09480	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD13_09485	COG0575	Belongs to the CDS family
BJD13_09490	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD13_09495	COG0750	zinc metalloprotease
BJD13_09510	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_09515	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_09520	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_09525	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_09540	COG0825	malonyl-CoA metabolic process
BJD13_09575	COG1695	Transcriptional regulator
BJD13_09595	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD13_09605	COG2040	homocysteine
BJD13_09610	COG0833	amino acid
BJD13_09625	COG0346	lactoylglutathione lyase activity
BJD13_09645	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_09645	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD13_09655	COG2878	Part of a membrane complex involved in electron transport
BJD13_09675	COG1595	DNA-templated transcription, initiation
BJD13_09700	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD13_09715	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD13_09720	COG0251	oxidation-reduction process
BJD13_09730	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BJD13_09730	COG0392	lysyltransferase activity
BJD13_09765	COG2814	Major facilitator Superfamily
BJD13_09770	COG1902	pentaerythritol trinitrate reductase activity
BJD13_09780	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD13_09790	COG1047	Peptidyl-prolyl cis-trans
BJD13_09795	COG1077	Cell shape determining protein MreB Mrl
BJD13_09815	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD13_09825	COG5487	UPF0391 membrane protein
BJD13_09830	COG1451	nucleotide metabolic process
BJD13_09855	COG0183	Belongs to the thiolase family
BJD13_09870	COG0745	RESPONSE REGULATOR receiver
BJD13_09870	COG3706	GGDEF domain
BJD13_09890	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD13_09890	COG1793	dna ligase
BJD13_09900	COG1793	dna ligase
BJD13_09905	COG1201	RNA secondary structure unwinding
BJD13_09915	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_09920	COG1278	Cold shock
BJD13_09925	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD13_09935	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_09940	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD13_09945	COG1233	COG1233 Phytoene dehydrogenase and related
BJD13_09950	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD13_09960	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD13_09975	COG1381	Involved in DNA repair and RecF pathway recombination
BJD13_09980	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD13_09985	COG0571	ribonuclease III activity
BJD13_10000	COG0481	GTPase activity
BJD13_10005	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD13_10020	COG1024	Enoyl-CoA hydratase
BJD13_10020	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD13_10040	COG1024	Enoyl-CoA hydratase
BJD13_10045	COG1960	acyl-CoA dehydrogenase activity
BJD13_10065	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD13_10070	COG3250	beta-galactosidase activity
BJD13_10085	COG0840	transmembrane signaling receptor activity
BJD13_10110	COG3483	tryptophan 2,3-dioxygenase activity
BJD13_10120	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD13_10130	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD13_10155	COG0534	Mate efflux family protein
BJD13_10160	COG0335	large ribosomal subunit rRNA binding
BJD13_10165	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD13_10170	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD13_10175	COG0228	four-way junction DNA binding
BJD13_10180	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD13_10190	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD13_10195	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD13_10225	COG4191	Histidine kinase
BJD13_10225	COG0784	Response regulator, receiver
BJD13_10230	COG4999	Histidine kinase
BJD13_10230	COG3437	response regulator, receiver
BJD13_10230	COG2205	protein histidine kinase activity
BJD13_10230	COG3850	Histidine kinase
BJD13_10235	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD13_10245	COG2205	protein histidine kinase activity
BJD13_10250	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD13_10260	COG4771	TonB-dependent receptor
BJD13_10285	COG2172	sigma factor antagonist activity
BJD13_10290	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD13_10295	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD13_10305	COG0326	Molecular chaperone. Has ATPase activity
BJD13_10310	COG2207	Transcriptional regulator
BJD13_10320	COG3152	Membrane
BJD13_10335	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD13_10340	COG1845	cytochrome c oxidase, subunit III
BJD13_10345	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD13_10360	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD13_10365	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD13_10370	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD13_10375	COG0196	riboflavin kinase activity
BJD13_10385	COG0268	Binds directly to 16S ribosomal RNA
BJD13_10390	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD13_10395	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD13_10400	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD13_10405	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD13_10410	COG0824	Thioesterase
BJD13_10420	COG1024	Enoyl-CoA hydratase
BJD13_10425	COG1946	Acyl-CoA thioesterase
BJD13_10435	COG1595	DNA-templated transcription, initiation
BJD13_10450	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD13_10470	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD13_10495	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD13_10510	COG2197	response regulator
BJD13_10515	COG4585	Histidine kinase
BJD13_10530	COG0850	regulation of cytokinetic process
BJD13_10535	COG2894	cell division
BJD13_10540	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD13_10550	COG0642	Histidine kinase
BJD13_10555	COG0745	RESPONSE REGULATOR receiver
BJD13_10570	COG2194	sulfuric ester hydrolase activity
BJD13_10590	COG2814	Major facilitator Superfamily
BJD13_10615	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD13_10615	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD13_10620	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD13_10625	COG0656	L-ascorbic acid biosynthetic process
BJD13_10630	COG0753	catalase activity
BJD13_10655	COG1917	Cupin 2, conserved barrel domain protein
BJD13_10655	COG2207	Transcriptional regulator
BJD13_10670	COG1506	peptidase
BJD13_10670	COG0823	Involved in the tonB-independent uptake of proteins
BJD13_10690	COG1297	OPT oligopeptide transporter protein
BJD13_10710	COG0587	DNA-directed DNA polymerase activity
BJD13_10730	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD13_10765	COG2080	2 iron, 2 sulfur cluster binding
BJD13_10770	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD13_10775	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD13_10800	COG0492	ferredoxin-NADP+ reductase activity
BJD13_10810	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_10820	COG3537	Alpha-1,2-mannosidase
BJD13_10825	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_10830	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_10840	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD13_10845	COG0328	RNA-DNA hybrid ribonuclease activity
BJD13_10845	COG0406	alpha-ribazole phosphatase activity
BJD13_10880	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
BJD13_10910	COG1309	transcriptional regulator
BJD13_10915	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_10925	COG0308	aminopeptidase N
BJD13_10930	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD13_10940	COG0330	HflC and HflK could
BJD13_10945	COG0330	HflC and HflK could
BJD13_10965	COG0678	peroxiredoxin activity
BJD13_10975	COG4953	penicillin-binding protein 1C
BJD13_10995	COG2373	Large extracellular alpha-helical protein
BJD13_11040	COG3829	transcription factor binding
BJD13_11070	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD13_11075	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD13_11085	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD13_11105	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_11110	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD13_11115	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD13_11120	COG0424	maF-like protein
BJD13_11135	COG0714	Associated with various cellular activities
BJD13_11155	COG0537	adenosine 5'-monophosphoramidase activity
BJD13_11160	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD13_11165	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD13_11190	COG4680	protein conserved in bacteria
BJD13_11205	COG2801	Transposase and inactivated derivatives
BJD13_11210	COG2963	transposase activity
BJD13_11245	COG2003	Belongs to the UPF0758 family
BJD13_11330	COG0314	molybdopterin synthase activity
BJD13_11335	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD13_11340	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD13_11350	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD13_11355	COG1234	tRNA 3'-trailer cleavage
BJD13_11360	COG3642	lipopolysaccharide core region biosynthetic process
BJD13_11365	COG0859	PFAM glycosyl transferase family 9
BJD13_11425	COG0631	protein serine/threonine phosphatase activity
BJD13_11430	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD13_11435	COG0328	RNA-DNA hybrid ribonuclease activity
BJD13_11445	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_11455	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD13_11485	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD13_11490	COG0740	serine-type endopeptidase activity
BJD13_11495	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD13_11505	COG3852	Histidine kinase
BJD13_11535	COG0473	3-isopropylmalate dehydrogenase activity
BJD13_11550	COG4783	chaperone-mediated protein folding
BJD13_11565	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD13_11575	COG0438	transferase activity, transferring glycosyl groups
BJD13_11580	COG0671	phosphoesterase, PA-phosphatase related
BJD13_11585	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD13_11595	COG3291	Pkd domain containing protein
BJD13_11600	COG2833	Protein of unknown function (DUF455)
BJD13_11625	COG0285	dihydrofolate synthase activity
BJD13_11630	COG0406	alpha-ribazole phosphatase activity
BJD13_11650	COG1063	alcohol dehydrogenase
BJD13_11665	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD13_11670	COG4208	sulfate ABC transporter
BJD13_11675	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD13_11680	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD13_11685	COG0156	8-amino-7-oxononanoate synthase activity
BJD13_11705	COG2885	chlorophyll binding
BJD13_11710	COG0604	alcohol dehydrogenase
BJD13_11715	COG1902	pentaerythritol trinitrate reductase activity
BJD13_11715	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD13_11735	COG0625	glutathione transferase activity
BJD13_11740	COG0039	L-malate dehydrogenase activity
BJD13_11745	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD13_11760	COG0154	amidase activity
BJD13_11770	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD13_11790	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD13_11795	COG0203	ribosomal protein L17
BJD13_11800	COG0202	RNA polymerase activity
BJD13_11805	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BJD13_11810	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD13_11815	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BJD13_11820	COG0201	protein transport
BJD13_11825	COG0200	Binds to the 23S rRNA
BJD13_11830	COG1841	ribosomal large subunit assembly
BJD13_11835	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BJD13_11840	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD13_11845	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD13_11850	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD13_11855	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD13_11860	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD13_11865	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD13_11870	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BJD13_11875	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD13_11880	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD13_11885	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD13_11890	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD13_11895	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BJD13_11900	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD13_11905	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD13_11915	COG0088	Forms part of the polypeptide exit tunnel
BJD13_11920	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD13_11925	COG0051	transcription antitermination factor activity, RNA binding
BJD13_11940	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD13_11945	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD13_11950	COG0049	tRNA binding
BJD13_11955	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD13_11960	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD13_11965	COG0085	RNA polymerase activity
BJD13_11970	COG0222	ribosome binding
BJD13_11975	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD13_11980	COG0081	regulation of translation
BJD13_11985	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD13_11990	COG0250	Participates in transcription elongation, termination and antitermination
BJD13_11995	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD13_12005	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD13_12025	COG0012	GTP binding
BJD13_12030	COG0193	aminoacyl-tRNA hydrolase activity
BJD13_12035	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD13_12040	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD13_12050	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD13_12055	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD13_12065	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BJD13_12070	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD13_12085	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD13_12100	COG1254	Belongs to the acylphosphatase family
BJD13_12105	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_12110	COG1295	ribonuclease BN
BJD13_12135	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD13_12140	COG1404	Belongs to the peptidase S8 family
BJD13_12145	COG1404	Belongs to the peptidase S8 family
BJD13_12150	COG1404	Belongs to the peptidase S8 family
BJD13_12155	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD13_12170	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD13_12175	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD13_12195	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD13_12215	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD13_12215	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD13_12235	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD13_12245	COG3634	alkyl hydroperoxide reductase activity
BJD13_12250	COG0583	DNA-binding transcription factor activity
BJD13_12260	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD13_12265	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD13_12275	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD13_12285	COG2197	response regulator
BJD13_12310	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD13_12320	COG0697	spore germination
BJD13_12350	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
BJD13_12360	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_12380	COG1024	Enoyl-CoA hydratase
BJD13_12390	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_12395	COG0583	DNA-binding transcription factor activity
BJD13_12400	COG3384	dioxygenase
BJD13_12430	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_12435	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD13_12450	COG2096	Adenosyltransferase
BJD13_12455	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD13_12460	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD13_12465	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD13_12470	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD13_12475	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD13_12480	COG2967	ApaG domain
BJD13_12485	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD13_12500	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BJD13_12505	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD13_12525	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD13_12535	COG0642	Histidine kinase
BJD13_12550	COG4181	ATPase activity
BJD13_12560	COG2175	clavaminate synthase activity
BJD13_12570	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD13_12575	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD13_12595	COG4771	TonB-dependent receptor
BJD13_12605	COG0667	Aldo Keto reductase
BJD13_12615	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD13_12620	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_12630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD13_12635	COG4106	trans-aconitate 2-methyltransferase activity
BJD13_12645	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD13_12685	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD13_12695	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BJD13_12700	COG2226	methyltransferase
BJD13_12730	COG0366	Alpha amylase catalytic
BJD13_12750	COG3321	synthase
BJD13_12750	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_12750	COG0604	alcohol dehydrogenase
BJD13_12765	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD13_12775	COG0494	nUDIX hydrolase
BJD13_12780	COG0653	protein targeting
BJD13_12785	COG0739	heme binding
BJD13_12795	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD13_12810	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD13_12815	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD13_12820	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD13_12825	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BJD13_12835	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD13_12840	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD13_12845	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD13_12860	COG3116	cell division
BJD13_12865	COG0275	rRNA processing
BJD13_12870	COG2001	Belongs to the MraZ family
BJD13_12905	COG0792	nuclease activity
BJD13_12910	COG1988	membrane-bound metal-dependent
BJD13_12915	COG0277	FAD linked oxidase domain protein
BJD13_12925	COG0745	RESPONSE REGULATOR receiver
BJD13_12930	COG2205	protein histidine kinase activity
BJD13_12940	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD13_12945	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD13_12975	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD13_12980	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD13_12985	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD13_13005	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD13_13005	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD13_13015	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD13_13020	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD13_13030	COG0488	(ABC) transporter
BJD13_13040	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BJD13_13045	COG3791	Glutathione-dependent formaldehyde-activating
BJD13_13070	COG0745	RESPONSE REGULATOR receiver
BJD13_13075	COG2205	protein histidine kinase activity
BJD13_13085	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD13_13115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD13_13120	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_13125	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD13_13130	COG0617	tRNA 3'-terminal CCA addition
BJD13_13145	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD13_13150	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD13_13155	COG1609	Transcriptional regulator
BJD13_13190	COG4795	General secretion pathway protein
BJD13_13210	COG1459	type II secretion system
BJD13_13265	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD13_13270	COG4191	Histidine kinase
BJD13_13275	COG0784	Response regulator, receiver
BJD13_13280	COG4251	negative regulation of phosphorylation
BJD13_13285	COG2823	Periplasmic or secreted lipoprotein
BJD13_13290	COG0673	inositol 2-dehydrogenase activity
BJD13_13295	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD13_13330	COG1051	belongs to the nudix hydrolase family
BJD13_13330	COG1056	cytidyltransferase-related domain
BJD13_13340	COG0583	DNA-binding transcription factor activity
BJD13_13355	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD13_13360	COG0321	lipoyl(octanoyl) transferase activity
BJD13_13365	COG2921	Belongs to the UPF0250 family
BJD13_13375	COG1686	Belongs to the peptidase S11 family
BJD13_13385	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD13_13390	COG2951	lytic endotransglycosylase activity
BJD13_13405	COG0772	Belongs to the SEDS family
BJD13_13420	COG1792	Involved in formation and maintenance of cell shape
BJD13_13425	COG1077	Cell shape determining protein MreB Mrl
BJD13_13435	COG3284	Transcriptional regulator
BJD13_13445	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD13_13485	COG0308	aminopeptidase N
BJD13_13490	COG5001	Diguanylate cyclase
BJD13_13490	COG3300	MHYT domain
BJD13_13520	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD13_13525	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD13_13530	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD13_13540	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD13_13550	COG2832	Protein of unknown function (DUF454)
BJD13_13565	COG1505	serine-type exopeptidase activity
BJD13_13605	COG0181	hydroxymethylbilane synthase activity
BJD13_13615	COG3275	phosphorelay sensor kinase activity
BJD13_13625	COG2943	transferase activity, transferring hexosyl groups
BJD13_13640	COG3706	GGDEF domain
BJD13_13645	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_13650	COG5297	Belongs to the glycosyl hydrolase family 6
BJD13_13650	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_13655	COG0840	transmembrane signaling receptor activity
BJD13_13690	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD13_13705	COG0598	Magnesium transport protein CorA
BJD13_13715	COG1113	amino acid transport
BJD13_13735	COG0697	spore germination
BJD13_13760	COG1959	2 iron, 2 sulfur cluster binding
BJD13_13765	COG3706	GGDEF domain
BJD13_13815	COG0435	Glutathione S-transferase
BJD13_13825	COG4221	oxidoreductase activity
BJD13_13880	COG2963	transposase activity
BJD13_13885	COG2801	Transposase and inactivated derivatives
BJD13_14020	COG0546	phosphoglycolate phosphatase activity
BJD13_14025	COG1802	Transcriptional regulator
BJD13_14035	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BJD13_14040	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BJD13_14060	COG3052	prosthetic group binding
BJD13_14090	COG2353	YceI-like domain
BJD13_14095	COG0778	Nitroreductase
BJD13_14125	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD13_14130	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD13_14140	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_14160	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD13_14175	COG0459	protein refolding
BJD13_14180	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD13_14190	COG2356	endonuclease I
BJD13_14200	COG1324	tolerance protein
BJD13_14210	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD13_14215	COG0511	ligase activity, forming carbon-carbon bonds
BJD13_14225	COG0439	Biotin carboxylase
BJD13_14245	COG2264	protein methyltransferase activity
BJD13_14270	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD13_14275	COG4589	Belongs to the CDS family
BJD13_14300	COG0671	phosphoesterase, PA-phosphatase related
BJD13_14300	COG2453	phosphatase
BJD13_14305	COG2267	carboxylic ester hydrolase activity
BJD13_14310	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD13_14315	COG0138	bifunctional purine biosynthesis protein purh
BJD13_14325	COG0151	Belongs to the GarS family
BJD13_14330	COG1289	transmembrane transporter activity
BJD13_14335	COG2814	Major facilitator Superfamily
BJD13_14360	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD13_14380	COG0316	Belongs to the HesB IscA family
BJD13_14420	COG1051	belongs to the nudix hydrolase family
BJD13_14435	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD13_14440	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BJD13_14445	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD13_14455	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BJD13_14460	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_14470	COG0134	indole-3-glycerol-phosphate synthase activity
BJD13_14475	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD13_14505	COG1597	lipid kinase activity
BJD13_14510	COG0456	acetyltransferase
BJD13_14520	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
BJD13_14525	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD13_14545	COG3179	chitinase
BJD13_14565	COG2111	Na H antiporter
BJD13_14565	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD13_14570	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD13_14575	COG0651	ATP synthesis coupled electron transport
BJD13_14585	COG2212	antiporter activity
BJD13_14590	COG1320	monovalent cation:proton antiporter activity
BJD13_14605	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD13_14610	COG2852	Protein conserved in bacteria
BJD13_14630	COG3104	oligopeptide transport
BJD13_14635	COG3483	tryptophan 2,3-dioxygenase activity
BJD13_14645	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD13_14660	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD13_14675	COG0513	Belongs to the DEAD box helicase family
BJD13_14690	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_14695	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_14730	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_14735	COG0702	epimerase
BJD13_14760	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_14765	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_14770	COG0297	glycogen (starch) synthase activity
BJD13_14775	COG3706	GGDEF domain
BJD13_14775	COG0745	RESPONSE REGULATOR receiver
BJD13_14780	COG2354	Protein conserved in bacteria
BJD13_14790	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD13_14800	COG1368	sulfuric ester hydrolase activity
BJD13_14805	COG3264	Mechanosensitive ion channel
BJD13_14805	COG1511	domain protein
BJD13_14835	COG2963	transposase activity
BJD13_14895	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD13_14985	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD13_14990	COG1040	competence protein
BJD13_14995	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD13_15000	COG0156	8-amino-7-oxononanoate synthase activity
BJD13_15010	COG2267	carboxylic ester hydrolase activity
BJD13_15015	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_15055	COG0445	tRNA wobble uridine modification
BJD13_15075	COG1414	Transcriptional regulator
BJD13_15090	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD13_15095	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_15105	COG3485	protocatechuate 3,4-dioxygenase
BJD13_15110	COG3485	protocatechuate 3,4-dioxygenase
BJD13_15120	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD13_15125	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD13_15150	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD13_15155	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD13_15210	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD13_15230	COG0129	dihydroxy-acid dehydratase activity
BJD13_15250	COG2801	Transposase and inactivated derivatives
BJD13_15255	COG2963	transposase activity
BJD13_15320	COG1733	regulation of RNA biosynthetic process
BJD13_15325	COG0702	epimerase
BJD13_15360	COG0583	DNA-binding transcription factor activity
BJD13_15365	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD13_15380	COG1538	Outer membrane efflux protein
BJD13_15390	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_15395	COG2205	protein histidine kinase activity
BJD13_15400	COG0745	RESPONSE REGULATOR receiver
BJD13_15420	COG1902	pentaerythritol trinitrate reductase activity
BJD13_15425	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD13_15430	COG2267	carboxylic ester hydrolase activity
BJD13_15440	COG2814	Major facilitator Superfamily
BJD13_15445	COG0583	DNA-binding transcription factor activity
BJD13_15460	COG0084	hydrolase, TatD family'
BJD13_15485	COG2252	PERMEase
BJD13_15525	COG0583	DNA-binding transcription factor activity
BJD13_15535	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD13_15555	COG2072	flavoprotein involved in K transport
BJD13_15560	COG2351	hydroxyisourate hydrolase activity
BJD13_15565	COG4807	Protein conserved in bacteria
BJD13_15575	COG1643	Atp-dependent helicase
BJD13_15585	COG1187	pseudouridine synthase activity
BJD13_15600	COG2130	NADP-dependent
BJD13_15620	COG1764	response to oxidative stress
BJD13_15625	COG1846	Transcriptional regulator
BJD13_15630	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD13_15640	COG0697	spore germination
BJD13_15655	COG0523	cobalamin synthesis protein
BJD13_15720	COG1960	acyl-CoA dehydrogenase activity
BJD13_15725	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD13_15755	COG3706	GGDEF domain
BJD13_15760	COG2224	Isocitrate lyase
BJD13_15765	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD13_15770	COG0583	DNA-binding transcription factor activity
BJD13_15775	COG0475	glutathione-regulated potassium exporter activity
BJD13_15805	COG0339	signal peptide processing
BJD13_15810	COG1446	asparaginase
BJD13_15830	COG0564	pseudouridine synthase activity
BJD13_15840	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD13_15860	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_15865	COG0318	PFAM AMP-dependent synthetase and ligase
BJD13_15875	COG0596	Alpha beta hydrolase
BJD13_15880	COG3177	Filamentation induced by cAMP protein fic
BJD13_15885	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD13_15900	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD13_15925	COG4191	Histidine kinase
BJD13_15930	COG0028	Belongs to the TPP enzyme family
BJD13_15945	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD13_15950	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD13_15955	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD13_15990	COG0183	Belongs to the thiolase family
BJD13_16005	COG2032	superoxide dismutase activity
BJD13_16010	COG2032	superoxide dismutase activity
BJD13_16015	COG2204	response regulator
BJD13_16020	COG3852	Histidine kinase
BJD13_16025	COG0004	ammonium transporteR
BJD13_16030	COG0347	Belongs to the P(II) protein family
BJD13_16035	COG0174	glutamine synthetase
BJD13_16045	COG1968	undecaprenyl-diphosphatase activity
BJD13_16090	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_16100	COG2062	phosphohistidine phosphatase, SixA
BJD13_16105	COG0489	protein tyrosine kinase activity
BJD13_16145	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD13_16160	COG1125	glycine betaine transport
BJD13_16175	COG1119	ATPase activity
BJD13_16185	COG1473	amidohydrolase
BJD13_16190	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD13_16200	COG1522	sequence-specific DNA binding
BJD13_16205	COG3186	Phenylalanine-4-hydroxylase
BJD13_16215	COG2755	lipolytic protein G-D-S-L family
BJD13_16225	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_16230	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD13_16235	COG1609	Transcriptional regulator
BJD13_16240	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD13_16255	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD13_16265	COG0657	acetylesterase activity
BJD13_16265	COG2755	lipolytic protein G-D-S-L family
BJD13_16270	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD13_16285	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD13_16290	COG0366	Alpha amylase catalytic
BJD13_16295	COG0366	Alpha amylase catalytic
BJD13_16370	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD13_16380	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD13_16385	COG3710	Transcriptional regulator
BJD13_16405	COG2197	response regulator
BJD13_16410	COG4585	Histidine kinase
BJD13_16415	COG1755	Isoprenylcysteine carboxyl methyltransferase
BJD13_16430	COG1304	FMN binding
BJD13_16455	COG1012	belongs to the aldehyde dehydrogenase family
BJD13_16470	COG4772	TonB-dependent receptor
BJD13_16480	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD13_16530	COG0714	Associated with various cellular activities
BJD13_16570	COG0477	Major facilitator Superfamily
BJD13_16580	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD13_16630	COG3237	CsbD-like
BJD13_16670	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD13_16685	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_16690	COG0300	oxidoreductase activity
BJD13_16710	COG1272	protein, Hemolysin III
BJD13_16715	COG1205	dead DEAH box helicase
BJD13_16715	COG1111	helicase
BJD13_16810	COG0070	glutamate synthase
BJD13_16810	COG0069	glutamate synthase activity
BJD13_16810	COG0067	glutamate synthase
BJD13_16815	COG0493	'glutamate synthase
BJD13_16825	COG1064	alcohol dehydrogenase
BJD13_16835	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_16840	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_16845	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD13_16855	COG2234	aminopeptidase activity
BJD13_16865	COG4942	peptidase
BJD13_16870	COG0793	Belongs to the peptidase S41A family
BJD13_16915	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_16925	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD13_16960	COG0501	Belongs to the peptidase M48B family
BJD13_16970	COG0187	DNA topoisomerase II activity
BJD13_16975	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD13_16985	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD13_16995	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BJD13_17000	COG0594	ribonuclease P activity
BJD13_17005	COG0706	membrane insertase activity
BJD13_17010	COG0726	polysaccharide deacetylase
BJD13_17015	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD13_17030	COG0584	glycerophosphoryl diester phosphodiesterase
BJD13_17045	COG0861	Integral membrane protein TerC family
BJD13_17050	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD13_17065	COG2271	Major facilitator Superfamily
BJD13_17070	COG1929	Belongs to the glycerate kinase type-1 family
BJD13_17075	COG3835	regulator
BJD13_17080	COG2199	diguanylate cyclase activity
BJD13_17080	COG2203	Gaf domain
BJD13_17095	COG3537	Alpha-1,2-mannosidase
BJD13_17100	COG0531	amino acid
BJD13_17120	COG0583	DNA-binding transcription factor activity
BJD13_17125	COG0604	alcohol dehydrogenase
BJD13_17130	COG1322	Protein conserved in bacteria
BJD13_17140	COG0386	Belongs to the glutathione peroxidase family
BJD13_17150	COG2853	Lipoprotein
BJD13_17165	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD13_17170	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD13_17175	COG1127	ABC transporter
BJD13_17210	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD13_17215	COG1074	ATP-dependent DNA helicase activity
BJD13_17225	COG3549	Plasmid maintenance system killer
BJD13_17275	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_17285	COG1309	transcriptional regulator
BJD13_17330	COG0564	pseudouridine synthase activity
BJD13_17390	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_17400	COG4221	oxidoreductase activity
BJD13_17405	COG0583	DNA-binding transcription factor activity
BJD13_17415	COG0477	Major facilitator Superfamily
BJD13_17420	COG1289	transmembrane transporter activity
BJD13_17430	COG1566	PFAM secretion protein HlyD family protein
BJD13_17445	COG0302	gtp cyclohydrolase
BJD13_17465	COG0730	response to heat
BJD13_17470	COG3012	SEC-C Motif Domain Protein
BJD13_17480	COG0676	glucose-6-phosphate 1-epimerase activity
BJD13_17500	COG3135	benzoate transporter
BJD13_17530	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD13_17540	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD13_17550	COG1435	thymidine kinase activity
BJD13_17555	COG0210	DNA helicase
BJD13_17570	COG3132	Protein of unknown function, DUF480
BJD13_17580	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD13_17585	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD13_17620	COG2937	Belongs to the GPAT DAPAT family
BJD13_17665	COG2211	Major facilitator Superfamily
BJD13_17680	COG3693	PFAM glycoside hydrolase, family 10
BJD13_17690	COG3693	PFAM glycoside hydrolase, family 10
BJD13_17695	COG1904	glucuronate isomerase
BJD13_17700	COG3250	beta-galactosidase activity
BJD13_17710	COG3386	PFAM SMP-30 Gluconolaconase
BJD13_17735	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD13_17785	COG0246	Mannitol dehydrogenase
BJD13_17790	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_17800	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_17810	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD13_17820	COG2115	Belongs to the xylose isomerase family
BJD13_17825	COG0037	tRNA processing
BJD13_17830	COG2974	May be involved in recombination
BJD13_17850	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD13_17860	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD13_17865	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD13_17870	COG0805	protein transport
BJD13_17880	COG0519	Catalyzes the synthesis of GMP from XMP
BJD13_17880	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD13_17895	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD13_17900	COG0752	glycyl-tRNA synthetase alpha subunit
BJD13_17910	COG0457	Tetratricopeptide repeat
BJD13_17920	COG4771	TonB-dependent receptor
BJD13_17925	COG0729	surface antigen
BJD13_17930	COG2911	Protein conserved in bacteria
BJD13_17955	COG3209	COG3209 Rhs family protein
BJD13_17960	COG2963	transposase activity
BJD13_17990	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_18000	COG3265	gluconokinase activity
BJD13_18005	COG2211	Major facilitator Superfamily
BJD13_18010	COG3459	Glycosyltransferase 36 associated
BJD13_18025	COG2205	protein histidine kinase activity
BJD13_18030	COG1971	Probably functions as a manganese efflux pump
BJD13_18040	COG1414	Transcriptional regulator
BJD13_18045	COG0738	Major facilitator superfamily
BJD13_18050	COG3254	rhamnose metabolic process
BJD13_18055	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_18065	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD13_18070	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_18090	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD13_18125	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD13_18135	COG3162	membrane
BJD13_18140	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD13_18150	COG0708	Exodeoxyribonuclease III
BJD13_18170	COG2091	lysine biosynthetic process via aminoadipic acid
BJD13_18180	COG3540	Alkaline phosphatase
BJD13_18185	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD13_18210	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_18225	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BJD13_18230	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BJD13_18235	COG2159	amidohydrolase
BJD13_18250	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD13_18255	COG0583	DNA-binding transcription factor activity
BJD13_18260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD13_18275	COG0210	DNA helicase
BJD13_18420	COG3501	Rhs element vgr protein
BJD13_18435	COG0583	DNA-binding transcription factor activity
BJD13_18440	COG0667	Aldo Keto reductase
BJD13_18465	COG0631	protein serine/threonine phosphatase activity
BJD13_18470	COG0515	serine threonine protein kinase
BJD13_18505	COG0408	coproporphyrinogen oxidase activity
BJD13_18550	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD13_18565	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_18605	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_18625	COG0463	Glycosyl transferase, family 2
BJD13_18635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD13_18640	COG3100	YcgL domain-containing protein
BJD13_18650	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_18655	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD13_18680	COG2239	Acts as a magnesium transporter
BJD13_18685	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD13_18685	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD13_18685	COG1042	CoA-binding domain protein
BJD13_18700	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD13_18710	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD13_18715	COG0716	FMN binding
BJD13_18740	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD13_18745	COG0842	Transport permease protein
BJD13_18750	COG1131	(ABC) transporter
BJD13_18755	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_18780	COG1476	TRANSCRIPTIONal
BJD13_18790	COG4555	ABC transporter
BJD13_18825	COG0625	glutathione transferase activity
BJD13_18875	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD13_18890	COG1199	ATP-dependent helicase activity
BJD13_18925	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD13_18935	COG0745	RESPONSE REGULATOR receiver
BJD13_18940	COG2205	protein histidine kinase activity
BJD13_18970	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BJD13_18970	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BJD13_18975	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD13_18995	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD13_19035	COG3237	CsbD-like
BJD13_19040	COG0180	Tryptophanyl-tRNA synthetase
BJD13_19045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD13_19065	COG0697	spore germination
BJD13_19090	COG1136	(ABC) transporter
BJD13_19095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_19100	COG4585	Histidine kinase
BJD13_19105	COG2197	response regulator
BJD13_19120	COG0753	catalase activity
BJD13_19135	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD13_19140	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD13_19165	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD13_19185	COG0642	Histidine kinase
BJD13_19190	COG0745	RESPONSE REGULATOR receiver
BJD13_19195	COG1090	epimerase
BJD13_19235	COG1690	Belongs to the RtcB family
BJD13_19275	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD13_19290	COG0606	chelatase, subunit chli
BJD13_19310	COG3291	Pkd domain containing protein
BJD13_19310	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD13_19335	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD13_19340	COG1166	arginine decarboxylase activity
BJD13_19345	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BJD13_19355	COG2755	lipolytic protein G-D-S-L family
BJD13_19355	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BJD13_19365	COG4221	oxidoreductase activity
BJD13_19380	COG0018	arginyl-trna synthetase
BJD13_19385	COG2003	Belongs to the UPF0758 family
BJD13_19390	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD13_19395	COG0756	dUTP diphosphatase activity
BJD13_19415	COG0463	Glycosyl transferase, family 2
BJD13_19430	COG1475	DNA binding
BJD13_19435	COG1192	Involved in chromosome partitioning
BJD13_19445	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BJD13_19450	COG0708	Exodeoxyribonuclease III
BJD13_19455	COG2211	Major facilitator Superfamily
BJD13_19465	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD13_19470	COG0739	heme binding
BJD13_19475	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD13_19515	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD13_19525	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD13_19555	COG0109	protoheme IX farnesyltransferase activity
BJD13_19570	COG0358	DNA primase activity
BJD13_19575	COG1295	ribonuclease BN
BJD13_19585	COG1610	YqeY-like protein
BJD13_19590	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD13_19595	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD13_19600	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD13_19610	COG2133	pyrroloquinoline quinone binding
BJD13_19630	COG0531	amino acid
BJD13_19640	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_19650	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD13_19655	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD13_19700	COG5383	Protein conserved in bacteria
BJD13_19710	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_19715	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_19720	COG1473	amidohydrolase
BJD13_19725	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD13_19725	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD13_19730	COG1652	LysM domain
BJD13_19750	COG0583	DNA-binding transcription factor activity
BJD13_19755	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD13_19770	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD13_19775	COG3118	belongs to the thioredoxin family
BJD13_19785	COG2884	Cell division ATP-binding protein ftsE
BJD13_19790	COG2177	Part of the ABC transporter FtsEX involved in
BJD13_19795	COG2201	protein-glutamate methylesterase activity
BJD13_19800	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD13_19805	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD13_19810	COG2860	membrane
BJD13_19815	COG1252	NADH dehydrogenase
BJD13_19830	COG0625	glutathione transferase activity
BJD13_19835	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD13_19855	COG0534	Mate efflux family protein
BJD13_19860	COG0616	signal peptide processing
BJD13_19875	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_19890	COG0009	L-threonylcarbamoyladenylate synthase
BJD13_19895	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD13_19895	COG1754	DNA topoisomerase type I activity
BJD13_19915	COG0758	DNA mediated transformation
BJD13_19920	COG1652	LysM domain
BJD13_19925	COG0242	peptide deformylase activity
BJD13_19930	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD13_19935	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD13_19935	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD13_19985	COG1560	Kdo2-lipid A biosynthetic process
BJD13_19990	COG1490	D-aminoacyl-tRNA deacylase activity
BJD13_19995	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD13_20235	COG4695	Portal protein
BJD13_20265	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_20280	COG0024	Methionine aminopeptidase
BJD13_20290	COG0038	chloride channel
BJD13_20295	COG0659	secondary active sulfate transmembrane transporter activity
BJD13_20325	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD13_20330	COG0583	DNA-binding transcription factor activity
BJD13_20350	COG0251	oxidation-reduction process
BJD13_20425	COG1063	alcohol dehydrogenase
BJD13_20440	COG1132	(ABC) transporter
BJD13_20460	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD13_20465	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_20480	COG1294	oxidase, subunit
BJD13_20485	COG1271	oxidase subunit
BJD13_20500	COG2204	response regulator
BJD13_20535	COG3546	catalase activity
BJD13_20540	COG3685	Protein conserved in bacteria
BJD13_20560	COG2972	Histidine kinase
BJD13_20575	COG0531	amino acid
BJD13_20590	COG3590	peptidase
BJD13_20605	COG0667	Aldo Keto reductase
BJD13_20615	COG0583	DNA-binding transcription factor activity
BJD13_20620	COG3384	dioxygenase
BJD13_20630	COG1573	uracil-dna glycosylase
BJD13_20635	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD13_20645	COG0025	NhaP-type Na H and K H
BJD13_20650	COG1131	(ABC) transporter
BJD13_20655	COG0842	Transport permease protein
BJD13_20705	COG1522	sequence-specific DNA binding
BJD13_20710	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD13_20715	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD13_20735	COG2202	Pas domain
BJD13_20735	COG2205	protein histidine kinase activity
BJD13_20755	COG2813	Specifically methylates the guanine in position
BJD13_20760	COG1187	pseudouridine synthase activity
BJD13_20765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD13_20790	COG2198	Histidine kinase
BJD13_20790	COG5002	protein histidine kinase activity
BJD13_20790	COG0784	Response regulator, receiver
BJD13_20800	COG1666	GTP binding
BJD13_20805	COG0697	spore germination
BJD13_20810	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD13_20815	COG2011	ABC-type metal ion transport system permease component
BJD13_20855	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD13_20865	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD13_20885	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD13_20895	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD13_20900	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD13_20905	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD13_20910	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD13_20915	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD13_20920	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD13_20935	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD13_20940	COG4191	Histidine kinase
BJD13_20945	COG2204	response regulator
BJD13_20955	COG0577	efflux transmembrane transporter activity
BJD13_20960	COG0577	efflux transmembrane transporter activity
BJD13_20965	COG1136	(ABC) transporter
BJD13_20970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD13_20975	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD13_21025	COG0339	signal peptide processing
BJD13_21040	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD13_21050	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD13_21065	COG1956	GAF domain-containing protein
BJD13_21070	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD13_21080	COG0720	synthase
BJD13_21085	COG0513	Belongs to the DEAD box helicase family
BJD13_21100	COG0625	glutathione transferase activity
BJD13_21130	COG0626	cystathionine gamma-synthase activity
BJD13_21160	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD13_21170	COG0277	FAD linked oxidase domain protein
BJD13_21175	COG0546	phosphoglycolate phosphatase activity
BJD13_21175	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BJD13_21190	COG2086	electron transfer activity
BJD13_21220	COG0662	Cupin 2, conserved barrel domain protein
BJD13_21220	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD13_21225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD13_21230	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD13_21270	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD13_21270	COG3218	ABC-type transport auxiliary lipoprotein component
BJD13_21275	COG1127	ABC transporter
BJD13_21280	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD13_21295	COG0442	prolyl-tRNA aminoacylation
BJD13_21305	COG1183	phosphatidylcholine synthase activity
BJD13_21340	COG0525	valine-tRNA ligase activity
BJD13_21355	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD13_21365	COG0795	lipopolysaccharide-transporting ATPase activity
BJD13_21380	COG4974	Belongs to the 'phage' integrase family
BJD13_21390	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD13_21400	COG0047	phosphoribosylformylglycinamidine synthase activity
BJD13_21400	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BJD13_21405	COG5295	Hep Hag repeat protein
BJD13_21410	COG1404	Belongs to the peptidase S8 family
BJD13_21415	COG5295	Hep Hag repeat protein
BJD13_21420	COG1404	Belongs to the peptidase S8 family
BJD13_21425	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD13_21435	COG1459	type II secretion system
BJD13_21440	COG2165	general secretion pathway protein
BJD13_21445	COG4970	Tfp pilus assembly protein FimT
BJD13_21450	COG2165	general secretion pathway protein
BJD13_21455	COG4795	General secretion pathway protein
BJD13_21460	COG3156	type II secretion system protein K
BJD13_21465	COG3166	PFAM Fimbrial assembly family protein
BJD13_21480	COG1450	Type ii and iii secretion system protein
BJD13_21490	COG2188	Transcriptional regulator
BJD13_21535	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD13_21550	COG1215	transferase activity, transferring glycosyl groups
BJD13_21555	COG1215	transferase activity, transferring glycosyl groups
BJD13_21560	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD13_21565	COG0457	Tetratricopeptide repeat
BJD13_21595	COG0242	peptide deformylase activity
BJD13_21600	COG1307	EDD domain protein, DegV family
BJD13_21625	COG0402	S-adenosylhomocysteine deaminase activity
BJD13_21630	COG3964	amidohydrolase
BJD13_21645	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD13_21650	COG0726	polysaccharide deacetylase
BJD13_21665	COG0436	Aminotransferase
BJD13_21670	COG1162	GTPase activity
BJD13_21695	COG2211	Major facilitator Superfamily
BJD13_21700	COG1609	Transcriptional regulator
BJD13_21705	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_21710	COG2851	Citrate transporter
BJD13_21730	COG0642	Histidine kinase
BJD13_21735	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD13_21740	COG2197	response regulator
BJD13_21755	COG0667	Aldo Keto reductase
BJD13_21765	COG0583	DNA-binding transcription factor activity
BJD13_21790	COG1301	dicarboxylic acid transport
BJD13_21795	COG0281	malic enzyme
BJD13_21795	COG0280	phosphate acetyltransferase
BJD13_21820	COG1560	Kdo2-lipid A biosynthetic process
BJD13_21830	COG1519	Transferase
BJD13_21835	COG1538	Outer membrane efflux protein
BJD13_21840	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD13_21850	COG3706	GGDEF domain
BJD13_21860	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BJD13_21865	COG0066	3-isopropylmalate dehydratase activity
BJD13_21870	COG0473	3-isopropylmalate dehydrogenase activity
BJD13_21875	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BJD13_21895	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD13_21900	COG0405	Gamma-glutamyltransferase
BJD13_21905	COG0840	transmembrane signaling receptor activity
BJD13_21920	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD13_21925	COG3710	Transcriptional regulator
BJD13_21945	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD13_21955	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD13_21970	COG0563	adenylate kinase activity
BJD13_21975	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD13_21985	COG3781	membrane
BJD13_21990	COG0671	phosphoesterase, PA-phosphatase related
BJD13_22000	COG1028	Short-chain dehydrogenase reductase Sdr
BJD13_22005	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD13_22010	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD13_22040	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD13_22045	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
BJD13_22060	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD13_22075	COG0352	thiamine-phosphate diphosphorylase activity
BJD13_22080	COG1773	rubredoxin
BJD13_22085	COG2912	Transglutaminase-like superfamily
BJD13_22095	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BJD13_22105	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD13_22125	COG3079	Belongs to the UPF0149 family
BJD13_22130	COG0006	proline dipeptidase activity
BJD13_22140	COG0006	proline dipeptidase activity
BJD13_22155	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD13_22160	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD13_22170	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD13_22175	COG1561	YicC-like family, N-terminal region
BJD13_22180	COG0194	GDP metabolic process
BJD13_22185	COG1758	RNA polymerase activity
BJD13_22190	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD13_22200	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD13_22205	COG1957	nucleoside hydrolase
BJD13_22210	COG0254	rRNA binding
BJD13_22225	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD13_22255	COG0714	Associated with various cellular activities
BJD13_22275	COG2304	oxidoreductase activity
BJD13_22290	COG1301	dicarboxylic acid transport
BJD13_22295	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD13_22300	COG4773	Receptor
BJD13_22305	COG0739	heme binding
BJD13_22310	COG1376	ErfK ybiS ycfS ynhG family protein
BJD13_22345	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
BJD13_22350	COG4149	molybdate abc transporter
BJD13_22355	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD13_22370	COG3047	cAMP biosynthetic process
BJD13_22385	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD13_22405	COG0126	phosphoglycerate kinase activity
BJD13_22415	COG0469	pyruvate kinase activity
BJD13_22420	COG3588	fructose-bisphosphate aldolase
BJD13_22425	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD13_22440	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD13_22440	COG1648	precorrin-2 dehydrogenase activity
BJD13_22485	COG0175	sulfate reduction
BJD13_22490	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD13_22495	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD13_22500	COG0175	sulfate reduction
BJD13_22505	COG2895	sulfate adenylyltransferase (ATP) activity
BJD13_22505	COG0529	Catalyzes the synthesis of activated sulfate
BJD13_22520	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD13_22525	COG0308	aminopeptidase N
BJD13_22540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD13_22555	COG4948	Mandelate Racemase Muconate Lactonizing
BJD13_22560	COG3250	beta-galactosidase activity
BJD13_22570	COG1609	Transcriptional regulator
BJD13_22585	COG1970	mechanosensitive ion channel activity
BJD13_22610	COG0471	metal ion transport
BJD13_22610	COG3273	potassium ion transport
BJD13_22615	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BJD13_22620	COG2022	thiamine diphosphate biosynthetic process
BJD13_22665	COG0189	ligase activity
BJD13_22675	COG0745	RESPONSE REGULATOR receiver
BJD13_22685	COG0237	dephospho-CoA kinase activity
BJD13_22690	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD13_22755	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD13_22760	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BJD13_22775	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD13_22775	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD13_22785	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD13_22790	COG0564	pseudouridine synthase activity
BJD13_22805	COG3011	Protein conserved in bacteria
BJD13_22810	COG0840	transmembrane signaling receptor activity
BJD13_22825	COG3387	PFAM Glycoside hydrolase 15-related
BJD13_22830	COG1877	trehalose-phosphatase activity
BJD13_22880	COG0542	response to heat
BJD13_22885	COG4206	TonB-dependent receptor
BJD13_22905	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD13_22915	COG1492	cobalamin metabolic process
BJD13_22925	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD13_22950	COG0019	diaminopimelate decarboxylase activity
BJD13_22960	COG2814	Major facilitator Superfamily
BJD13_22965	COG4264	IucA IucC family
BJD13_22975	COG4772	TonB-dependent receptor
BJD13_23000	COG4651	solute:proton antiporter activity
BJD13_23000	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD13_23040	COG0488	(ABC) transporter
BJD13_23060	COG0657	acetylesterase activity
BJD13_23060	COG2755	lipolytic protein G-D-S-L family
BJD13_23080	COG0477	Major facilitator Superfamily
BJD13_23095	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD13_23125	COG0217	transcriptional regulatory protein
BJD13_23130	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD13_23135	COG0632	four-way junction helicase activity
BJD13_23140	COG3158	transport of potassium into the cell
BJD13_23150	COG2255	four-way junction helicase activity
BJD13_23155	COG0824	Thioesterase
BJD13_23165	COG0848	biopolymer transport protein
BJD13_23175	COG0823	Involved in the tonB-independent uptake of proteins
BJD13_23180	COG2885	chlorophyll binding
BJD13_23190	COG0602	queuosine metabolic process
BJD13_23205	COG3920	Histidine kinase
BJD13_23225	COG0840	transmembrane signaling receptor activity
BJD13_23240	COG1187	pseudouridine synthase activity
BJD13_23265	COG0514	ATP-dependent DNA helicase (RecQ)
BJD13_23270	COG0783	Belongs to the Dps family
BJD13_23275	COG1643	Atp-dependent helicase
BJD13_23285	COG0837	glucose binding
BJD13_23305	COG0535	radical SAM domain protein
BJD13_23310	COG0535	radical SAM domain protein
BJD13_23315	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD13_23320	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD13_23330	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD13_23345	COG1215	transferase activity, transferring glycosyl groups
BJD13_23350	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD13_23360	COG1199	ATP-dependent helicase activity
BJD13_23365	COG1214	PFAM Peptidase M22, glycoprotease
BJD13_23400	COG0189	ligase activity
BJD13_23415	COG0835	chemotaxis
BJD13_23420	COG0840	transmembrane signaling receptor activity
BJD13_23460	COG1595	DNA-templated transcription, initiation
BJD13_23465	COG2304	oxidoreductase activity
BJD13_23470	COG1446	asparaginase
BJD13_23475	COG3142	Participates in the control of copper homeostasis
BJD13_23520	COG3537	Alpha-1,2-mannosidase
BJD13_23530	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD13_23540	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD13_23545	COG3858	chitin binding
BJD13_23545	COG1388	LysM domain
BJD13_23560	COG0837	glucose binding
BJD13_23565	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD13_23575	COG0494	nUDIX hydrolase
BJD13_23585	COG3956	TIGRFAM MazG family protein
BJD13_23590	COG1742	UPF0060 membrane protein
BJD13_23605	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD13_23610	COG0509	glycine decarboxylation via glycine cleavage system
BJD13_23635	COG1960	acyl-CoA dehydrogenase activity
BJD13_23640	COG2267	carboxylic ester hydrolase activity
BJD13_23645	COG1309	transcriptional regulator
BJD13_23660	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD13_23665	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD13_23670	COG0463	Glycosyl transferase, family 2
BJD13_23675	COG0516	GMP reductase activity
BJD13_23675	COG0517	IMP dehydrogenase activity
BJD13_23680	COG2982	Protein involved in outer membrane biogenesis
BJD13_23685	COG1272	protein, Hemolysin III
BJD13_23690	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD13_23695	COG0739	heme binding
BJD13_23700	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD13_23705	COG0626	cystathionine gamma-synthase activity
BJD13_23710	COG0527	aspartate kinase activity
BJD13_23710	COG0460	homoserine dehydrogenase
BJD13_23725	COG1760	l-serine dehydratase
BJD13_23745	COG2353	YceI-like domain
BJD13_23750	COG0784	Response regulator, receiver
BJD13_23750	COG2198	Histidine kinase
BJD13_23750	COG2205	protein histidine kinase activity
BJD13_23775	COG2814	Major facilitator Superfamily
BJD13_23780	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD13_23790	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD13_23795	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD13_23800	COG0259	pyridoxamine-phosphate oxidase activity
BJD13_23810	COG1842	Phage shock protein A
BJD13_23925	COG1475	DNA binding
BJD13_23945	COG2885	chlorophyll binding
BJD13_24025	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD13_24105	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs