locus_tag old_locus_tag gene Name start end strand product note type ID NCBI CPT_Pagan_001 CPT_Pagan_001 CPT_Pagan_001 1 446 + hypothetical protein gene gene-CPT_Pagan_001 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_001 CPT_Pagan_002 CPT_Pagan_002 CPT_Pagan_002 437 644 + hypothetical protein gene gene-CPT_Pagan_002 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_002 CPT_Pagan_003 CPT_Pagan_003 CPT_Pagan_003 1074 1214 + hypothetical protein gene gene-CPT_Pagan_003 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_003 CPT_Pagan_004 CPT_Pagan_004 CPT_Pagan_004 1331 1593 + hypothetical protein gene gene-CPT_Pagan_004 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_004 CPT_Pagan_005 CPT_Pagan_005 CPT_Pagan_005 1577 1736 + hypothetical protein gene gene-CPT_Pagan_005 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_005 CPT_Pagan_006 CPT_Pagan_006 CPT_Pagan_006 1802 2326 + hypothetical protein gene gene-CPT_Pagan_006 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_006 CPT_Pagan_007 CPT_Pagan_007 CPT_Pagan_007 2313 2556 + hypothetical protein gene gene-CPT_Pagan_007 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_007 CPT_Pagan_008 CPT_Pagan_008 CPT_Pagan_008 2517 3479 + hypothetical protein InterProScan identified signal peptide and non-cytoplasmic domain gene gene-CPT_Pagan_008 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_008 CPT_Pagan_009 CPT_Pagan_009 CPT_Pagan_009 3530 3670 + hypothetical protein gene gene-CPT_Pagan_009 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_009 CPT_Pagan_010 CPT_Pagan_010 CPT_Pagan_010 3652 3884 + hypothetical protein gene gene-CPT_Pagan_010 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_010 CPT_Pagan_011 CPT_Pagan_011 CPT_Pagan_011 3866 4422 + hypothetical protein gene gene-CPT_Pagan_011 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_011 CPT_Pagan_012 CPT_Pagan_012 CPT_Pagan_012 4398 4693 + hypothetical protein gene gene-CPT_Pagan_012 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_012 CPT_Pagan_013 CPT_Pagan_013 CPT_Pagan_013 4682 5082 + hypothetical protein gene gene-CPT_Pagan_013 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_013 CPT_Pagan_014 CPT_Pagan_014 CPT_Pagan_014 5070 5417 + hypothetical protein gene gene-CPT_Pagan_014 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_014 CPT_Pagan_015 CPT_Pagan_015 CPT_Pagan_015 5534 6009 + hypothetical protein gene gene-CPT_Pagan_015 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_015 CPT_Pagan_016 CPT_Pagan_016 CPT_Pagan_016 5994 6242 + hypothetical protein gene gene-CPT_Pagan_016 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_016 CPT_Pagan_017 CPT_Pagan_017 CPT_Pagan_017 6249 7082 + DNA primase BLASTp similarity to Xanthomonas phage f20-Xaj DNA primase/helicase%2C NCBI AMM44673.1%3B Contains primase superfamily domain G3DSA:3.40.1360.10 gene gene-CPT_Pagan_017 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_017 CPT_Pagan_018 CPT_Pagan_018 CPT_Pagan_018 7063 7314 + hypothetical protein gene gene-CPT_Pagan_018 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_018 CPT_Pagan_019 CPT_Pagan_019 CPT_Pagan_019 7292 8590 + DNA helicase BLASTp similarity to A0A249XLE4_9CAUD DNA helicase of Xanthomonas phage phi Xc10%3B Contains gene gene-CPT_Pagan_019 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_019 CPT_Pagan_020 CPT_Pagan_020 CPT_Pagan_020 8577 8904 + hypothetical protein gene gene-CPT_Pagan_020 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_020 CPT_Pagan_021 CPT_Pagan_021 CPT_Pagan_021 8887 9347 + hypothetical protein gene gene-CPT_Pagan_021 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_021 CPT_Pagan_022 CPT_Pagan_022 CPT_Pagan_022 9334 11809 + DNA polymerase I BLASTp similarity to phage T7 DNA polymerase NCBI NC_001604%3B Contains DNA Polymerase A family InterPro domain IPR001098 gene gene-CPT_Pagan_022 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_022 CPT_Pagan_023 CPT_Pagan_023 CPT_Pagan_023 11809 12717 + hypothetical protein gene gene-CPT_Pagan_023 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_023 CPT_Pagan_024 CPT_Pagan_024 CPT_Pagan_024 12705 13646 + exonuclease BLASTp similarity to NCBI NP_853581.1 exonuclease of SP6 p21%3B Contains 5-prime-3-prime exonuclease activity InterPro domain IPR036279 gene gene-CPT_Pagan_024 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_024 CPT_Pagan_025 CPT_Pagan_025 CPT_Pagan_025 13628 14029 + endonuclease VII BLASTp similarity to NCBI NP_049692.1 recombination endonuclease VII of phage T4%3B Contains recombination endonuclease VII InterPro domain IPR004211 gene gene-CPT_Pagan_025 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_025 CPT_Pagan_026 CPT_Pagan_026 CPT_Pagan_026 14016 14853 + exonuclease Contains ribonuclease H-like superfamily InterPro domain IPR012337%3B BLASTp similarity to phage phiKMV protein NP_877463 gene gene-CPT_Pagan_026 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_026 CPT_Pagan_027 CPT_Pagan_027 CPT_Pagan_027 14853 15441 + hypothetical protein gene gene-CPT_Pagan_027 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_027 CPT_Pagan_028 CPT_Pagan_028 CPT_Pagan_028 15413 15640 + hypothetical protein gene gene-CPT_Pagan_028 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_028 CPT_Pagan_029 CPT_Pagan_029 CPT_Pagan_029 15631 15849 + hypothetical protein gene gene-CPT_Pagan_029 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_029 CPT_Pagan_030 CPT_Pagan_030 CPT_Pagan_030 15839 16158 + hypothetical protein gene gene-CPT_Pagan_030 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_030 CPT_Pagan_031 CPT_Pagan_031 CPT_Pagan_031 16136 16351 + hypothetical protein gene gene-CPT_Pagan_031 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_031 CPT_Pagan_032 CPT_Pagan_032 CPT_Pagan_032 16335 17310 + DNA ligase Contains DNA ligase/mRNA capping enzyme catalytic superfamily domain%2C InterPro SSF56091 gene gene-CPT_Pagan_032 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_032 CPT_Pagan_033 CPT_Pagan_033 CPT_Pagan_033 17295 17474 + hypothetical protein gene gene-CPT_Pagan_033 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_033 CPT_Pagan_034 CPT_Pagan_034 CPT_Pagan_034 17464 17728 + hypothetical protein gene gene-CPT_Pagan_034 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_034 CPT_Pagan_035 CPT_Pagan_035 CPT_Pagan_035 17721 20240 + RNA polymerase BLASTp similarity to NCBI NP_041960.1 T7 RNA polymerase%3B Contains DNA/RNA polymerase superfamily InterPro domain SSF56672 gene gene-CPT_Pagan_035 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_035 CPT_Pagan_036 CPT_Pagan_036 CPT_Pagan_036 20348 20567 + hypothetical protein gene gene-CPT_Pagan_036 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_036 CPT_Pagan_037 CPT_Pagan_037 CPT_Pagan_037 20518 21003 + hypothetical protein gene gene-CPT_Pagan_037 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_037 CPT_Pagan_038 CPT_Pagan_038 CPT_Pagan_038 20995 21354 + hypothetical protein gene gene-CPT_Pagan_038 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_038 CPT_Pagan_039 CPT_Pagan_039 CPT_Pagan_039 21353 22894 + portal protein BLASTp similarity to NCBI NP_853590.1 SP6 head portal protein%3B Contains podophage head-to-tail connector InterPro domain IPR020991 gene gene-CPT_Pagan_039 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_039 CPT_Pagan_040 CPT_Pagan_040 CPT_Pagan_040 22876 23742 + scaffolding protein BLASTp similarity to SwissProt A0A249XLG2_9CAUD Scaffold protein of Xanthomonas phage phi Xc10 gene gene-CPT_Pagan_040 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_040 CPT_Pagan_041 CPT_Pagan_041 CPT_Pagan_041 23749 24769 + major capsid protein BLASTp similarity to phage SP6 major capsid protein%2C NCBI NP_853592.1 gene gene-CPT_Pagan_041 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_041 CPT_Pagan_042 CPT_Pagan_042 CPT_Pagan_042 24833 25057 + hypothetical protein gene gene-CPT_Pagan_042 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_042 CPT_Pagan_043 CPT_Pagan_043 CPT_Pagan_043 25105 25732 + tail tube protein BLASTp similarity to phage T7 tail tubular protein A%2C NCBI NP_041999.1%3B Contains tail tubular InterPro domain IPR033767 gene gene-CPT_Pagan_043 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_043 CPT_Pagan_044 CPT_Pagan_044 CPT_Pagan_044 25732 28246 + tail tube protein BLASTp similarity to phage T7 tail tubular protein B%2C NCBI NP_042000.1 gene gene-CPT_Pagan_044 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_044 CPT_Pagan_045 CPT_Pagan_045 CPT_Pagan_045 28233 29130 + internal virion protein BLASTp similarity to internal virion protein of Xanthomonas phage phi Xc10 SwissProt A0A249XLH2_9CAUD and Xylella phage Prado NCBI YP_008859423.1 gene gene-CPT_Pagan_045 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_045 CPT_Pagan_046 CPT_Pagan_046 CPT_Pagan_046 29115 31487 + internal virion protein BLASTp similarity to internal virion protein of Xanthomonas phage phi Xc10 SwissProt A0A249XN37_9CAUD and Xylella phage Prado YP_008859424.1 gene gene-CPT_Pagan_046 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_046 CPT_Pagan_047 CPT_Pagan_047 CPT_Pagan_047 31487 36409 + internal virion protein Contains lysozyme-like superfamily InterPro domain IPR023346%3B BLASTp similarity to internal virion protein of Xanthomonas phage phi Xc10 SwissProt A0A249XLI1_9CAUD and phage phiKMV NCBI NP_877476.1 gene gene-CPT_Pagan_047 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_047 CPT_Pagan_048 CPT_Pagan_048 CPT_Pagan_048 36458 37589 + tail fiber BLASTp similarity to tail fiber protein (SwissProt A0A249XLM8_9CAUD) of Xanthomonas phage phi Xc10%3B Contains T7 tail fiber protein InterPro domain IPR005604 gene gene-CPT_Pagan_048 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_048 CPT_Pagan_049 CPT_Pagan_049 CPT_Pagan_049 37582 38803 + tail fiber BLASTp similarity to tail fiber protein (SwissProt A0A249XLB2_9CAUD) of Xanthomonas phage phi Xc10%3B Contains galactose-binding superfamily InterPro domain IPR008979 gene gene-CPT_Pagan_049 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_049 CPT_Pagan_050 CPT_Pagan_050 CPT_Pagan_050 38790 39744 + tail fiber BLASTp similarity to tail fiber protein (SwissProt A0A249XLB3_9CAUD) of Xanthomonas phage phi Xc10 gene gene-CPT_Pagan_050 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_050 CPT_Pagan_051 CPT_Pagan_051 CPT_Pagan_051 39725 40322 + tail fiber BLASTp similarity to tail fiber protein (SwissProt A0A249XLC9_9CAUD) of Xanthomonas phage phi Xc10 gene gene-CPT_Pagan_051 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_051 CPT_Pagan_052 CPT_Pagan_052 CPT_Pagan_052 40328 40539 + pinholin class II BLASTp similarity to holin of Xylella phage Prado (NCBI YP_008859430.1)%3B TMHMM predicts N-terminus in periplasm and C-terminus in cytoplasm%2C with a single transmembrane domain%2C making it class II%3B Presence of SAR domain in endolysin suggests this is a pinholin gene gene-CPT_Pagan_052 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_052 CPT_Pagan_053 CPT_Pagan_053 CPT_Pagan_053 40510 40810 + terminase small subunit BLASTp similarity to terminase small subunit of Xanthomonas phage phi Xc10 SwissProt A0A249XLG0_9CAUD gene gene-CPT_Pagan_053 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_053 CPT_Pagan_054 CPT_Pagan_054 CPT_Pagan_054 40786 42611 + terminase large subunit BLASTp similarity to terminase large subunit of Xanthomonas phage phi Xc10 SwissProt A0A249XLH1_9CAUD%3B Contains P-loop-containing nucleotide triphosphate hydrolase superfamily domain G3DSA:3.40.50.300 gene gene-CPT_Pagan_054 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_054 CPT_Pagan_055 CPT_Pagan_055 CPT_Pagan_055 42604 42861 + hypothetical protein gene gene-CPT_Pagan_055 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_055 CPT_Pagan_056 CPT_Pagan_056 CPT_Pagan_056 42851 43416 + SAR endolysin Contains lysozyme InterPro domain IPR002196%3B BLASTp similarity to phage Mu SAR endolysin NCBI NP_050626.1%3B TMHMM analysis reveals SAR domain gene gene-CPT_Pagan_056 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_056 CPT_Pagan_057 CPT_Pagan_057 CPT_Pagan_057 43397 43715 + i-spanin BLASTp similarity to phage Prado overlapping inner membrane i-spanin%2C PMID 24214944%3B TMHMM reveals single transmembrane domain gene gene-CPT_Pagan_057 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_057 CPT_Pagan_058 CPT_Pagan_058 CPT_Pagan_058 43603 43914 + o-spanin Contains lipobox motif PS51257%3B BLASTp similarity to phage Prado overlapping outer membrane o-spanin%2C PMID 24214944 gene gene-CPT_Pagan_058 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_058 CPT_Pagan_059 CPT_Pagan_059 CPT_Pagan_059 43902 44342 + peptidase Cotains aminohydrolase InterPro domain IPR029055 gene gene-CPT_Pagan_059 http://www.ncbi.nlm.nih.gov/gene/?term=CPT_Pagan_059