LOCUS MH206183 6564 bp DNA circular PHG 07-JUL-2018 DEFINITION Xanthomonas phage phiXv2, complete genome. ACCESSION MH206183 VERSION MH206183.1 KEYWORDS . SOURCE Xanthomonas phage phiXv2 ORGANISM Xanthomonas phage phiXv2 Viruses; ssDNA viruses; Inoviridae; unclassified Inoviridae. REFERENCE 1 (bases 1 to 6564) AUTHORS Yeh,T. TITLE Complete nucleotide sequence of filamentous phage phiXv2 that integrates its genome into the chromosomal DNA of Xanthomonas campestris pv. vesicatora JOURNAL Unpublished REFERENCE 2 (bases 1 to 6564) AUTHORS Yeh,T. TITLE Direct Submission JOURNAL Submitted (12-APR-2018) Agricultural Biotechnology Laboratory, Plant Health Division, Auxergen Inc., 1100 Wicomico Street, Suite 700, Baltimore, MD 21230, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6564 /organism="Xanthomonas phage phiXv2" /mol_type="genomic DNA" /isolation_source="leaf spots from pepper and tomato" /host="Xanthomonas campestris pv. vesicatora ATCC35937" /db_xref="taxon:2201472" CDS 1..1062 /note="phiXv2 phage gII protein; phiXv2 ORF1" /codon_start=1 /transl_table=11 /product="replication initiation protein" /protein_id="AWY09619.1" /translation="MLPWSSTVADGTCSFCGETTVYFFPGGLCVACTGKNARIRMQEQ PTQSRELSAFDTSVGVMQAATRRTEIAAEKIQKNKRVVGTSVREFDAAHPIALTAEGQ RAALALGLVHYKTSDTRASTTGTVTIEIDPLQARAQRLRKSVITGARLHDQEAKKGSF RGAWYFLTLTYRDGSDSSPRDVSELFKRMRGHFNRLKSGRARWNRESFRYVWVGELTQ RFRPHYHVMLWVPTGMYFGKVDQRGWWPHGTTQIEKARNCVGYLAKYASKFTALTAGA FPKGFRTHGIGGLDTESKRELRWWKAPKDAREALGGEADIRKAKGGWFDRLTGEFWPS PWKVTFIFGRTFAWKVVQL" CDS 1059..1355 /note="phiXv2 phage gV protein; phiXv2 ORF2" /codon_start=1 /transl_table=11 /product="ssDNA-binding protein" /protein_id="AWY09613.1" /translation="MKVQVMSSAVAVRSFPAREGKPATHFREQTAAVLREGDFPLPFT IGLDEDQPPYGEGFYIIDPKSLQNNKFGGLEFGRRIRLLPDLTAKLQQQPAKVG" CDS 1387..1518 /note="phiXv2 phage gVII protein; phiXv2 ORF3" /codon_start=1 /transl_table=11 /product="minor coat protein" /protein_id="AWY09614.1" /translation="MARWCPPVNRLASAAATCSSVVANTACMRWCKKRSPCPARRTP" CDS 1494..1610 /note="phiXv2 phage gIX protein; phiXv2 ORF4" /codon_start=1 /transl_table=11 /product="minor coat protein" /protein_id="AWY09615.1" /translation="MPSKEDAVAWSTGCCGLVIVWFVLGRLAGSVAGMFNDR" CDS 1638..1766 /note="phiXv2 phage gVIII protein; phiXv2 ORF5" /codon_start=1 /transl_table=11 /product="major coat protein B" /protein_id="AWY09616.1" /translation="MGDILTGVSGAEAATAMIAAAAIIALVGFTKWGAKKVASFFG" CDS 1896..2882 /note="phiXv2 phage gIII protein; phiXv2 ORF6; Phage absorption protein, minor coat protein A" /codon_start=1 /transl_table=11 /product="minor coat protein A" /protein_id="AWY09617.1" /translation="MITVRLVACILAVALWSCAFSANAAMCRDAADACDQGQAFLAAR MLADQRGVDLCKLVGGSNSLYKGPDVVAESAGIYNAQATCSIGGPAGAGSTFYSKTCA QRPPLIGASSSDGSGFSCDDGCFYNFTVGASGGSGMYPSGATCSAGDAPPSTPGDDGG DGDGGSDGGGDGGSDGGGDGGSDGGGDGGSDGGSDGGGDGDGDGDGDGDGDGDGDTPG DGDGTTPGQGEGGEGAPMSELYNKSGKTVESVLSKFNTQVRGTPMVAGITDFMTVPSG GSCPVFSLGASKWWNAMTINFHCGGDFLAFLRAAGWVILAIAAYAALRIAVT" CDS 2893..2994 /note="phiXv2 phage protein; phiXv2 ORF7; homologous to gVI" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AWY09618.1" /translation="MQAGWFNDFTSRLSRALKAVWDGYCDFMSELWR" CDS 3017..3337 /note="phiXv2 phage gVI protein; phiXv2 ORF8" /codon_start=1 /transl_table=11 /product="minor coat protein B" /protein_id="AWY09621.1" /translation="MQAGWFNDLTAWLWRAVKLVWQAIVDFVGDLFVMWLEQSLAAIL YVLTLLPMPDFMKGQSIGGMLGNAGSTILWFADVFKIGPALVMIGAAMVFYLLRRVLT VGIW" CDS 3339..4661 /note="phiXv2 phage gI protein; phiXv2 ORF9; phage zonular occludens toxin Zot protein" /codon_start=1 /transl_table=11 /product="zonular occludens toxin" /protein_id="AWY09622.1" /translation="MHVFNEGVPRAGKSYDAVKNHILPALKKGRRVFARLNGLRFDRI AKHLGIAESDVQSLLVLVDTKDVTKLFACTQDESGKWCIPDEFKDSLVVIDEVHEFYV NERKPLSPAVENFWALLGQNGGDAVIMTQWINRLHSAVKARIEKKNTFQKLTAIGMKG RYRVTYFHTTSPGKFEKVGGQTLKYDPAIFPLYDGYAPGAENTEVYEEGGKNVWAAMA VRAAIFIVVGGVGIYFFVHYFTKDRSDPNKPVASASQTNKPAHVGAGLANGAPSVPIQ PPPPDPLADLTQEQRYVAELASKGRIRLSARARVGDQDRAWVQWIDESNNVIEELDLT QLRALGYSVSVVTYGVRLSAGKHIMVATAWPWTAPIREKDARLYNMAPDGSGGAAGVA TVGSDGGGADRDRVRGGVIEYGPRTQGTFPDNKAYTTNTTTPATTLQM" CDS 4691..5083 /note="phiXv2 phage protein; phiXv2 ORF10; DUF4124 domain-containing protein, putative secreted protein" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="AWY09620.1" /translation="MDIRAFFVVLFVASVPASAQQVFKCVSGAQVVYQSAPCPGVTAK QWDAQPEPDNPALRQRLARTAAQLRARNASPVRSGSGTYVAASSSKDRYACEVAKEGR RAAYEAAGVHRSFALSSYWDNAVQDACK" CDS complement(5122..5460) /note="phiLf phage ORF112-like protein; phiXv2 ORF11" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AWY09623.1" /translation="MTIDTYERVDLTGPWAGFGFQGHRFFTPEGRDIDPVGMRYWSLT CNIAREWALMMAEERERVWHARPAEVIYLRDVLRRRREMRLSVVDGAGSADRSTVIRR TRGPRGPRRG" CDS complement(5457..5972) /note="Cf1c cp8-like protein; phiXv2 ORF12; Cf1c 18.2 kDa protein-like, helix-turn-helix XRE-family DNA binding protein" /codon_start=1 /transl_table=11 /product="helix-turn-helix XRE-family DNA binding protein" /protein_id="AWY09624.1" /translation="MPKHGCMYSFHCPLCQEKPVMDHVNNLLDTVRKSCAIPSDNMLS KKIGVTRALISGWRVGRYPVPDARIAELCAMAHLDGGEWMAKIHAEAAASPAEKALWR SVLDRLSAAAAVVALLVLAVHTGAHDALLAALSPVALTHPLYIMRSGLLTLLCALAAY QCWSLHRKRTG" misc_recomb complement(5531..5545) /recombination_class="other" /note="xerc/d recombination; phage attachment site; attP" ORIGIN 1 atgctgccat ggagttctac cgtggctgac ggcacatgct cgttctgcgg tgaaacaacc 61 gtctacttct ttcccggtgg cttgtgcgtc gcatgcaccg gtaaaaacgc acgcatccgc 121 atgcaggaac agcccacgca atcgcgtgag ttgtccgctt tcgatacgtc tgtcggcgtc 181 atgcaggccg ctacgcgccg cactgaaatc gccgcagaga agatccaaaa gaacaagcgt 241 gtggtcggca caagcgtgcg tgagttcgac gctgcccatc cgatcgcatt gaccgctgag 301 ggccagcgcg cagcgctggc ccttgggctt gtccattaca aaacaagtga cacgcgggcc 361 tctacgaccg gcaccgtgac catcgaaatc gacccgctac aagcgcgggc gcaacggctg 421 cgcaagtccg tgattaccgg agcacgtctg catgaccagg aagcgaaaaa aggctccttc 481 cggggtgcgt ggtatttcct cacgctcacc taccgtgatg gaagcgacag cagccctcgt 541 gacgttagcg aactatttaa acgcatgcgc ggccacttca atcgccttaa atctgggcgc 601 gcacggtgga accgtgaaag ctttcgttac gtatgggtcg gagagctcac ccagcgattc 661 cgcccgcact accacgtaat gctgtgggtt ccgacgggta tgtatttcgg caaagtcgat 721 caacgcggct ggtggcctca tggcacaacg caaattgaaa aagcccgcaa ctgcgtcggc 781 tatctcgcga aatacgcgag caagttcact gcccttacag ctggagcttt tcccaaaggc 841 ttccgcacac atggcattgg tggactcgat accgaatcta agcgcgagtt gcgctggtgg 901 aaagccccga aagatgcgcg tgaagctctc ggcggggaag cggatatccg caaagcaaag 961 ggcggatggt tcgacaggct taccggagag ttctggccgt ctccgtggaa agtcacattc 1021 attttcggcc ggacattcgc ctggaaggta gtccaactat gaaagtccaa gtcatgagtt 1081 ccgctgtcgc tgttcgttcc tttcctgctc gcgagggtaa gcccgcgacg catttccgtg 1141 agcagaccgc agcggtgttg cgcgagggag atttcccgct gccgttcacc attggccttg 1201 atgaggatca acccccgtac ggcgagggct tttacatcat cgaccccaag tcgttgcaga 1261 acaataaatt cggcggtctt gagttcggcc gtcgtattcg gctgttgcct gatctcactg 1321 caaagctgca acagcagccg gcaaaggttg gctgaatcat ggccgtgtgc gtagccctgc 1381 aagcggatgg cacgttggtg cccaccggtc aatcggttgg cgagtgcagc ggctacgtgc 1441 tcgtcagtgg tagcgaatac agcgtgtatg cgctggtgca agaagcgttc gccatgccca 1501 gcaaggagga cgccgtagcg tggtccaccg gctgctgcgg cttggtgatc gtgtggttcg 1561 tcctgggacg cctcgccggc agcgtcgcag gcatgttcaa cgaccggtaa atcaatcaat 1621 caacgaggag agtaaacatg ggtgacattc tgactggcgt gagcggtgct gaggctgcaa 1681 ccgcgatgat cgcagcggcc gcaatcattg ccttggtggg cttcaccaag tggggtgcca 1741 agaaggttgc aagcttcttc ggctaatggt ggtgagggca gggcggcgct tcggtgtcgc 1801 cctctctctt tcaggggtag ggcgatgatc gttctcttgt tctgtggatt catgggcgcg 1861 ttgtgtgggt gggcaggcgt caaggggttg gatgcgtgat aactgttcgc cttgtagcgt 1921 gcatccttgc ggttgcgttg tggtcatgcg cgtttagcgc caatgccgcc atgtgtagag 1981 atgcggctga cgcctgcgat caaggtcagg cgttcttggc tgctcgcatg ctggccgatc 2041 agcgcggcgt tgatttgtgc aagctagtcg gcggttccaa ttcgctttac aaggggcctg 2101 atgttgttgc cgagagtgct ggcatttata acgcacaggc gacgtgtagc atcggtgggc 2161 ctgctggtgc tggttccacg ttttacagca aaacgtgtgc ccagcgtccc cccttgattg 2221 gcgcgtcttc ttccgatggc agcggtttta gctgcgatga cggctgtttt tacaatttca 2281 ccgttggtgc atcaggcggc agcggcatgt atcccagcgg tgccacttgc tctgcgggtg 2341 atgcgccacc ttccacgcct ggtgatgacg gcggtgatgg cgacggcggc agcgatggtg 2401 gtggagatgg tggcagtgac ggtggtggag acggtggaag cgatggcggt ggtgacggtg 2461 gcagtgacgg tggcagtgat ggcggtggtg acggcgacgg cgatggtgat ggtgatggcg 2521 acggtgatgg cgacggtgat actcctggtg atggtgacgg cacgacgcct ggtcagggtg 2581 aaggcggcga gggcgctccc atgtccgagc tctacaataa aagcggcaag acagttgagt 2641 ctgtgctgag caaattcaat acgcaggtgc gcggcacgcc catggttgcc ggcatcacgg 2701 attttatgac tgtgccctcc ggtggatcgt gcccggtgtt ttcgctgggc gcgtcgaagt 2761 ggtggaacgc catgacgatc aattttcatt gtggcggcga ttttctggcg tttctgcgcg 2821 cggcgggctg ggtgatcctg gcgattgctg cttacgctgc gctccgtatt gctgtgacct 2881 gaggacgacg atatgcaagc aggttggttc aatgatttca cgtcgcgact atcacgtgcc 2941 ttaaaagcgg tgtgggatgg atattgcgat ttcatgtctg aattgtggcg ttgatgtgtt 3001 gacttgggga gacgatatgc aagcaggttg gttcaacgat ttgaccgcat ggctgtggcg 3061 tgcggtcaaa ctggtgtggc aggcgattgt cgatttcgtg ggcgacctgt tcgtgatgtg 3121 gctggaacag tcgctggctg ccattctcta cgtgttgacg ttgctgccta tgccggactt 3181 catgaagggc cagagcatcg gcggcatgct cggtaacgcc ggcagcacaa ttttgtggtt 3241 cgccgacgtg ttcaagatcg ggcctgccct ggtgatgatc ggcgcggcca tggtgttcta 3301 tctgttgcgt cgcgtgctga cggtcgggat ttggtgacat gcatgttttc aatgaaggtg 3361 tgccgcgtgc tggcaagagc tacgacgcgg taaagaatca catcctcccc gcgctcaaga 3421 agggccggcg tgtgttcgca cggctcaacg gcttgcgatt tgatcgcatt gccaagcacc 3481 tgggcattgc cgaaagcgat gtgcaaagcc tgctcgtctt ggtcgatacg aaggacgtga 3541 ccaagctttt tgcgtgcacg caggatgagt cgggcaagtg gtgcattccg gacgagttca 3601 aggattcgtt ggtcgtcatt gatgaggtgc acgagttcta cgtcaatgag cgcaagccgc 3661 tctcgccggc agtggagaat ttctgggcgc tgctcggcca gaacggcggc gatgcggtca 3721 tcatgacgca gtggatcaac cgccttcact ctgcggtcaa ggcgcgcatc gagaagaaaa 3781 acaccttcca gaagctcacc gccatcggca tgaagggccg atatcgcgtg acgtatttcc 3841 ataccacctc gccggggaag ttcgagaagg tgggcgggca gacgctcaag tacgacccgg 3901 ccatttttcc gctgtatgac ggctatgccc ctggtgccga aaacaccgag gtctacgaag 3961 agggtggcaa gaacgtctgg gcagcgatgg cggtgcgtgc tgcgatcttc atcgttgtcg 4021 gtggtgttgg catctacttc ttcgtgcact acttcaccaa ggatcgttcc gatccgaaca 4081 agcctgtggc ctcggcaagc cagaccaata agcccgcgca cgttggtgca ggcttggcaa 4141 atggcgcgcc aagcgtgccg atccagccgc cgccgcccga tccgctcgcc gatctcacgc 4201 aggaacagcg ctatgtcgcc gagcttgcca gcaagggccg tatacgactg tcggcgcgtg 4261 cgcgggtagg cgatcaggat cgggcgtggg tccagtggat cgacgagagc aacaacgtca 4321 ttgaggaatt ggacctcacg cagctgcgcg ccctgggcta tagcgtcagc gtcgttacgt 4381 acggcgtgcg cttgtcagct ggcaagcaca tcatggtggc gaccgcgtgg ccctggaccg 4441 cgcccattcg tgagaaggac gcacggctct acaacatggc ccccgatggg agcggtggcg 4501 ctgctggcgt tgcgaccgta gggagtgacg gcggcggcgc tgaccgcgac cgggtgcgag 4561 gcggtgtcat tgagtacggg ccgcgcacgc agggcacgtt cccggacaac aaggcctaca 4621 ccacgaacac cacgacgccg gccactacct tgcagatgta ggtagaatcc cgctctcaag 4681 gggagggcgt atggatattc gtgcgttttt tgttgtgctc ttcgtggctt ccgttccggc 4741 cagcgcccag caggttttca agtgcgtgag tggtgcgcaa gtcgtttacc agtcggctcc 4801 gtgtccaggc gttaccgcaa agcaatggga tgctcagcct gagccggata acccggcgtt 4861 gaggcaaagg cttgcccgta ccgctgcgca gcttcgcgcc cgcaatgcgt ctcctgtccg 4921 ttccggttct gggacctatg tggctgccag ttcttccaag gatcgctatg catgtgaggt 4981 tgccaaagag gggcgtcgtg cagcctatga agctgccggc gtgcatcgct ctttcgcgct 5041 ttccagctat tgggacaacg cagtccaaga tgcctgcaaa tgacccaggg gtgtaggggc 5101 atagccccta cggataacgc cttacccgcg ccgtggacct cgtggcccac gcgtcctacg 5161 gatcaccgtc gatcgatcgg cggaccccgc gccatccacc actgatagcc gcatttcacg 5221 cctgcgccgg agcacgtccc gcaggtagat cacctcggcc ggcctggcat gccacacgcg 5281 ctcgcgttcc tcggccatca tcagcgccca ctcgcgggcg atgttgcatg tgagcgacca 5341 gtaccgcatt cccaccgggt cgatatctcg gccttcggga gtgaaaaacc gatgcccctg 5401 gaaaccaaaa ccggcccaag ggccggtcag gtctacgcgt tcgtaggtgt caatcgtcat 5461 ccagtccgct tcctgtggag ggaccagcat tgataggccg ccagggcgca caggagcgtc 5521 aacagtccac ttcgcataat gtatagaggg tgggtaagtg ctaccggcga aagggccgct 5581 agcagcgcgt catgcgctcc tgtgtgcacc gccaggacca gcagcgcgac caccgcggcg 5641 gccgcgctta gcctgtccaa cactgatcgc catagagctt tttcagccgg cgatgcagct 5701 gcttcggcgt gaattttcgc catccattcg cccccgtcca gatgcgccat agcgcatagc 5761 tctgcaatgc gcgcgtcagg aaccgggtag cgaccaacgc gccagccgct tatcagcgcc 5821 cgcgtcaccc caattttctt gctcaacatg ttgtcggacg gtatggcgca tgacttgcgc 5881 accgtgtcaa gcaaattatt tacatggtcc atgacaggtt tttcttgaca gagaggacag 5941 tgaaaactat acatgcatcc gtgcttaggc aaccctaagc accgcgcacc cccggctccc 6001 ctccggggtc cgcgtcaagg ggcaggggag ggggcttgat ggacgtcatc gcattcgcac 6061 ttctcggtac cgcctgcttg gtatgcagca tcggcgcagc gcgccttgtc ggctggatct 6121 tggatcgccg cgacgctgcc attcttcgtc agctgcggga agacgacctg attgctcagg 6181 ctaggcatca ggttcgtatc gcaaacctca agcgttccgt gcgcgctgcc gctgaggctg 6241 aggagtgcgc atgaaagagt tcgcaaagtg catcggattt gtctgggcgc tggccgcttt 6301 cgtttcgctt ttcattatcg gcgcctacta ccttcctgag ccgtggacat gggtctgcgg 6361 tgtgttcctc ttcgtgacgc ctgccggtgt ttttgcctac ctaggcggtg ttggtcatga 6421 ctgacgctcc gtctgtgcaa tggctcatcg ctgccgctcg tgtgcatggc ggtccacgca 6481 tctacgtctt gaccatcgtc gtcaatggca atcctgtcga acagagctat ttcgcatctc 6541 gcaccgatgc tgctgttgca cgtg //