locus-tag class description J6335_00005 PF00308 Bacterial dnaA protein J6335_00005 PF08299 Bacterial dnaA protein helix-turn-helix J6335_00005 PF11638 DnaA N-terminal domain J6335_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J6335_00010 PF02767 DNA polymerase III beta subunit, central domain J6335_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J6335_00015 PF02463 RecF/RecN/SMC N terminal domain J6335_00020 PF01751 Toprim domain J6335_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_00020 PF18053 DNA gyrase B subunit insert domain J6335_00020 PF00986 DNA gyrase B subunit, carboxyl terminus J6335_00020 PF00204 DNA gyrase B J6335_00030 PF01435 Peptidase family M48 J6335_00040 PF03544 Gram-negative bacterial TonB protein C-terminal J6335_00045 PF01618 MotA/TolQ/ExbB proton channel family J6335_00050 PF02472 Biopolymer transport protein ExbD/TolR J6335_00055 PF02472 Biopolymer transport protein ExbD/TolR J6335_00075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ J6335_00085 PF13396 Phospholipase_D-nuclease N-terminal J6335_00085 PF13091 PLD-like domain J6335_00100 PF04055 Radical SAM superfamily J6335_00110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J6335_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J6335_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J6335_00130 PF13180 PDZ domain J6335_00130 PF03572 Peptidase family S41 J6335_00135 PF01551 Peptidase family M23 J6335_00145 PF04389 Peptidase family M28 J6335_00155 PF00150 Cellulase (glycosyl hydrolase family 5) J6335_00160 PF00150 Cellulase (glycosyl hydrolase family 5) J6335_00170 PF00150 Cellulase (glycosyl hydrolase family 5) J6335_00175 PF08240 Alcohol dehydrogenase GroES-like domain J6335_00175 PF00107 Zinc-binding dehydrogenase J6335_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster J6335_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_00195 PF04898 Glutamate synthase central domain J6335_00195 PF01493 GXGXG motif J6335_00195 PF01645 Conserved region in glutamate synthase J6335_00195 PF00310 Glutamine amidotransferases class-II J6335_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_00220 PF03466 LysR substrate binding domain J6335_00285 PF00270 DEAD/DEAH box helicase J6335_00285 PF09369 Domain of unknown function (DUF1998) J6335_00285 PF00271 Helicase conserved C-terminal domain J6335_00290 PF03006 Haemolysin-III related J6335_00310 PF00106 short chain dehydrogenase J6335_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_00320 PF03466 LysR substrate binding domain J6335_00340 PF02525 Flavodoxin-like fold J6335_00350 PF05598 Transposase domain (DUF772) J6335_00350 PF01609 Transposase DDE domain J6335_00365 PF05598 Transposase domain (DUF772) J6335_00365 PF01609 Transposase DDE domain J6335_00375 PF05532 CsbD-like J6335_00400 PF02868 Thermolysin metallopeptidase, alpha-helical domain J6335_00400 PF16485 Protealysin propeptide J6335_00400 PF01447 Thermolysin metallopeptidase, catalytic domain J6335_00410 PF13344 Haloacid dehalogenase-like hydrolase J6335_00410 PF00293 NUDIX domain J6335_00425 PF00085 Thioredoxin J6335_00430 PF08946 Osmosensory transporter coiled coil J6335_00430 PF00083 Sugar (and other) transporter J6335_00475 PF07726 ATPase family associated with various cellular activities (AAA) J6335_00475 PF17863 AAA lid domain J6335_00515 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J6335_00520 PF00155 Aminotransferase class I and II J6335_00525 PF07715 TonB-dependent Receptor Plug Domain J6335_00525 PF00593 TonB dependent receptor J6335_00545 PF02735 Ku70/Ku80 beta-barrel domain J6335_00550 PF01070 FMN-dependent dehydrogenase J6335_00555 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family J6335_00560 PF07730 Histidine kinase J6335_00565 PF00072 Response regulator receiver domain J6335_00565 PF00196 Bacterial regulatory proteins, luxR family J6335_00590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase J6335_00590 PF07055 Enoyl reductase FAD binding domain J6335_00590 PF12241 Trans-2-enoyl-CoA reductase catalytic region J6335_00600 PF00294 pfkB family carbohydrate kinase J6335_00640 PF01609 Transposase DDE domain J6335_00640 PF05598 Transposase domain (DUF772) J6335_00645 PF05598 Transposase domain (DUF772) J6335_00645 PF01609 Transposase DDE domain J6335_00660 PF00128 Alpha amylase, catalytic domain J6335_00660 PF11896 Domain of unknown function (DUF3416) J6335_00665 PF16657 Maltogenic Amylase, C-terminal domain J6335_00665 PF00128 Alpha amylase, catalytic domain J6335_00670 PF00128 Alpha amylase, catalytic domain J6335_00670 PF02806 Alpha amylase, C-terminal all-beta domain J6335_00670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J6335_00680 PF00248 Aldo/keto reductase family J6335_00685 PF00135 Carboxylesterase family J6335_00690 PF13472 GDSL-like Lipase/Acylhydrolase family J6335_00690 PF07859 alpha/beta hydrolase fold J6335_00700 PF03480 Bacterial extracellular solute-binding protein, family 7 J6335_00710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component J6335_00715 PF04616 Glycosyl hydrolases family 43 J6335_00715 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J6335_00720 PF00356 Bacterial regulatory proteins, lacI family J6335_00725 PF04962 KduI/IolB family J6335_00740 PF00657 GDSL-like Lipase/Acylhydrolase J6335_00750 PF00351 Biopterin-dependent aromatic amino acid hydroxylase J6335_00755 PF01037 Lrp/AsnC ligand binding domain J6335_00760 PF07715 TonB-dependent Receptor Plug Domain J6335_00760 PF07660 Secretin and TonB N terminus short domain J6335_00760 PF00593 TonB dependent receptor J6335_00765 PF01734 Patatin-like phospholipase J6335_00775 PF00005 ABC transporter J6335_00790 PF00005 ABC transporter J6335_00790 PF00571 CBS domain J6335_00795 PF00528 Binding-protein-dependent transport system inner membrane component J6335_00805 PF12867 DinB superfamily J6335_00805 PF03781 Sulfatase-modifying factor enzyme 1 J6335_00835 PF10609 NUBPL iron-transfer P-loop NTPase J6335_00835 PF01883 Iron-sulfur cluster assembly protein J6335_00850 PF13091 PLD-like domain J6335_00855 PF03061 Thioesterase superfamily J6335_00880 PF08240 Alcohol dehydrogenase GroES-like domain J6335_00880 PF00107 Zinc-binding dehydrogenase J6335_00890 PF02673 Bacitracin resistance protein BacA J6335_00895 PF03951 Glutamine synthetase, beta-Grasp domain J6335_00895 PF00120 Glutamine synthetase, catalytic domain J6335_00900 PF00543 Nitrogen regulatory protein P-II J6335_00905 PF00909 Ammonium Transporter Family J6335_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_00910 PF00512 His Kinase A (phospho-acceptor) domain J6335_00910 PF00989 PAS fold J6335_00915 PF00158 Sigma-54 interaction domain J6335_00915 PF02954 Bacterial regulatory protein, Fis family J6335_00915 PF00072 Response regulator receiver domain J6335_00920 PF00080 Copper/zinc superoxide dismutase (SODC) J6335_00925 PF00080 Copper/zinc superoxide dismutase (SODC) J6335_00940 PF02803 Thiolase, C-terminal domain J6335_00940 PF00108 Thiolase, N-terminal domain J6335_00975 PF00581 Rhodanese-like domain J6335_00980 PF02556 Preprotein translocase subunit SecB J6335_00985 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J6335_00985 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J6335_01010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_01015 PF00158 Sigma-54 interaction domain J6335_01015 PF02954 Bacterial regulatory protein, Fis family J6335_01015 PF00072 Response regulator receiver domain J6335_01030 PF07690 Major Facilitator Superfamily J6335_01035 PF00588 SpoU rRNA Methylase family J6335_01050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J6335_01050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J6335_01055 PF02661 Fic/DOC family J6335_01055 PF13784 Fic/DOC family N-terminal J6335_01060 PF00561 alpha/beta hydrolase fold J6335_01065 PF03692 Putative zinc- or iron-chelating domain J6335_01070 PF00501 AMP-binding enzyme J6335_01075 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J6335_01090 PF07478 D-ala D-ala ligase C-terminus J6335_01090 PF01820 D-ala D-ala ligase N-terminus J6335_01100 PF03109 ABC1 family J6335_01110 PF00849 RNA pseudouridylate synthase J6335_01120 PF00472 RF-1 domain J6335_01130 PF01112 Asparaginase J6335_01135 PF01432 Peptidase family M3 J6335_01140 PF12706 Beta-lactamase superfamily domain J6335_01165 PF12833 Helix-turn-helix domain J6335_01170 PF00999 Sodium/hydrogen exchanger family J6335_01180 PF01274 Malate synthase J6335_01185 PF00463 Isocitrate lyase family J6335_01190 PF00990 Diguanylate cyclase, GGDEF domain J6335_01205 PF05598 Transposase domain (DUF772) J6335_01205 PF01609 Transposase DDE domain J6335_01220 PF00326 Prolyl oligopeptidase family J6335_01225 PF18140 Propionyl-coenzyme A carboxylase BT domain J6335_01225 PF00289 Biotin carboxylase, N-terminal domain J6335_01225 PF00364 Biotin-requiring enzyme J6335_01225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J6335_01225 PF02785 Biotin carboxylase C-terminal domain J6335_01230 PF01039 Carboxyl transferase domain J6335_01235 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_01235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_01235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_01290 PF02492 CobW/HypB/UreG, nucleotide-binding domain J6335_01290 PF07683 Cobalamin synthesis protein cobW C-terminal domain J6335_01310 PF03969 AFG1-like ATPase J6335_01315 PF01047 MarR family J6335_01320 PF02566 OsmC-like protein J6335_01340 PF16884 N-terminal domain of oxidoreductase J6335_01340 PF00107 Zinc-binding dehydrogenase J6335_01345 PF00248 Aldo/keto reductase family J6335_01355 PF00849 RNA pseudouridylate synthase J6335_01365 PF00270 DEAD/DEAH box helicase J6335_01365 PF04408 Helicase associated domain (HA2) J6335_01365 PF08482 ATP-dependent helicase C-terminal J6335_01365 PF00271 Helicase conserved C-terminal domain J6335_01370 PF07308 Protein of unknown function (DUF1456) J6335_01375 PF00576 HIUase/Transthyretin family J6335_01380 PF13454 FAD-NAD(P)-binding J6335_01385 PF01014 Uricase J6335_01385 PF09349 OHCU decarboxylase J6335_01400 PF00266 Aminotransferase class-V J6335_01405 PF07687 Peptidase dimerisation domain J6335_01405 PF01546 Peptidase family M20/M25/M40 J6335_01410 PF03466 LysR substrate binding domain J6335_01410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_01415 PF00561 alpha/beta hydrolase fold J6335_01430 PF01425 Amidase J6335_01435 PF01156 Inosine-uridine preferring nucleoside hydrolase J6335_01445 PF00860 Permease family J6335_01450 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_01455 PF00355 Rieske [2Fe-2S] domain J6335_01460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_01460 PF03466 LysR substrate binding domain J6335_01465 PF01026 TatD related DNase J6335_01480 PF03466 LysR substrate binding domain J6335_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_01485 PF07690 Major Facilitator Superfamily J6335_01495 PF00561 alpha/beta hydrolase fold J6335_01500 PF02146 Sir2 family J6335_01505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J6335_01510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J6335_01510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J6335_01520 PF00551 Formyl transferase J6335_01525 PF00072 Response regulator receiver domain J6335_01525 PF00486 Transcriptional regulatory protein, C terminal J6335_01530 PF00512 His Kinase A (phospho-acceptor) domain J6335_01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_01530 PF00672 HAMP domain J6335_01535 PF00529 HlyD membrane-fusion protein of T1SS J6335_01535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_01540 PF00873 AcrB/AcrD/AcrF family J6335_01545 PF08139 Prokaryotic membrane lipoprotein lipid attachment site J6335_01545 PF02321 Outer membrane efflux protein J6335_01560 PF02677 Epoxyqueuosine reductase QueH J6335_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_01565 PF03466 LysR substrate binding domain J6335_01570 PF03358 NADPH-dependent FMN reductase J6335_01580 PF08267 Cobalamin-independent synthase, N-terminal domain J6335_01580 PF01717 Cobalamin-independent synthase, Catalytic domain J6335_01585 PF03812 2-keto-3-deoxygluconate permease J6335_01600 PF05368 NmrA-like family J6335_01605 PF01638 HxlR-like helix-turn-helix J6335_01620 PF00872 Transposase, Mutator family J6335_01660 PF00920 Dehydratase family J6335_01675 PF00132 Bacterial transferase hexapeptide (six repeats) J6335_01685 PF07690 Major Facilitator Superfamily J6335_01690 PF01966 HD domain J6335_01690 PF11871 Domain of unknown function (DUF3391) J6335_01710 PF00171 Aldehyde dehydrogenase family J6335_01720 PF01494 FAD binding domain J6335_01730 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J6335_01730 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J6335_01735 PF00230 Major intrinsic protein J6335_01740 PF01266 FAD dependent oxidoreductase J6335_01740 PF16901 C-terminal domain of alpha-glycerophosphate oxidase J6335_01745 PF08220 DeoR-like helix-turn-helix domain J6335_01745 PF00455 DeoR C terminal sensor domain J6335_01750 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_01750 PF00970 Oxidoreductase FAD-binding domain J6335_01755 PF00355 Rieske [2Fe-2S] domain J6335_01760 PF01144 Coenzyme A transferase J6335_01770 PF02803 Thiolase, C-terminal domain J6335_01770 PF00108 Thiolase, N-terminal domain J6335_01775 PF00775 Dioxygenase J6335_01775 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal J6335_01785 PF00206 Lyase J6335_01785 PF10397 Adenylosuccinate lyase C-terminus J6335_01790 PF12146 Serine aminopeptidase, S33 J6335_01795 PF02627 Carboxymuconolactone decarboxylase family J6335_01805 PF09339 IclR helix-turn-helix domain J6335_01805 PF01614 Bacterial transcriptional regulator J6335_01815 PF07859 alpha/beta hydrolase fold J6335_01825 PF13932 GidA associated domain J6335_01825 PF01134 Glucose inhibited division protein A J6335_01835 PF00291 Pyridoxal-phosphate dependent enzyme J6335_01855 PF13649 Methyltransferase domain J6335_01865 PF12697 Alpha/beta hydrolase family J6335_01875 PF00155 Aminotransferase class I and II J6335_01880 PF06968 Biotin and Thiamin Synthesis associated domain J6335_01880 PF04055 Radical SAM superfamily J6335_01890 PF01040 UbiA prenyltransferase family J6335_01905 PF05819 NolX protein J6335_01910 PF01609 Transposase DDE domain J6335_01910 PF05598 Transposase domain (DUF772) J6335_01950 PF01313 Bacterial export proteins, family 3 J6335_01955 PF00813 FliP family J6335_01970 PF00771 FHIPEP family J6335_01975 PF01312 FlhB HrpN YscU SpaS Family J6335_01990 PF01514 Secretory protein of YscJ/FliF family J6335_02005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J6335_02005 PF02874 ATP synthase alpha/beta family, beta-barrel domain J6335_02005 PF18269 T3SS EscN ATPase C-terminal domain J6335_02015 PF01311 Bacterial export proteins, family 1 J6335_02020 PF03958 Bacterial type II/III secretion system short domain J6335_02020 PF00263 Bacterial type II and III secretion system protein J6335_02030 PF01464 Transglycosylase SLT domain J6335_02045 PF00924 Mechanosensitive ion channel J6335_02045 PF12795 Mechanosensitive ion channel porin domain J6335_02045 PF12794 Mechanosensitive ion channel inner membrane domain 1 J6335_02050 PF00884 Sulfatase J6335_02055 PF03109 ABC1 family J6335_02060 PF05661 Protein of unknown function (DUF808) J6335_02065 PF00990 Diguanylate cyclase, GGDEF domain J6335_02070 PF00534 Glycosyl transferases group 1 J6335_02070 PF08323 Starch synthase catalytic domain J6335_02075 PF02806 Alpha amylase, C-terminal all-beta domain J6335_02075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J6335_02075 PF00128 Alpha amylase, catalytic domain J6335_02080 PF00128 Alpha amylase, catalytic domain J6335_02080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J6335_02080 PF11941 Domain of unknown function (DUF3459) J6335_02085 PF02446 4-alpha-glucanotransferase J6335_02090 PF00128 Alpha amylase, catalytic domain J6335_02100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J6335_02100 PF00128 Alpha amylase, catalytic domain J6335_02105 PF13460 NAD(P)H-binding J6335_02130 PF00872 Transposase, Mutator family J6335_02140 PF05598 Transposase domain (DUF772) J6335_02140 PF01609 Transposase DDE domain J6335_02170 PF06903 VirK protein J6335_02175 PF02321 Outer membrane efflux protein J6335_02190 PF00873 AcrB/AcrD/AcrF family J6335_02205 PF00270 DEAD/DEAH box helicase J6335_02205 PF00271 Helicase conserved C-terminal domain J6335_02210 PF00364 Biotin-requiring enzyme J6335_02210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J6335_02220 PF02779 Transketolase, pyrimidine binding domain J6335_02220 PF02780 Transketolase, C-terminal domain J6335_02225 PF00676 Dehydrogenase E1 component J6335_02235 PF03301 Tryptophan 2,3-dioxygenase J6335_02240 PF00854 POT family J6335_02250 PF01047 MarR family J6335_02255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J6335_02260 PF04480 Protein of unknown function (DUF559) J6335_02265 PF04209 homogentisate 1,2-dioxygenase J6335_02280 PF03334 Na+/H+ antiporter subunit J6335_02285 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) J6335_02295 PF00361 Proton-conducting membrane transporter J6335_02300 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J6335_02305 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J6335_02305 PF00361 Proton-conducting membrane transporter J6335_02305 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter J6335_02305 PF13244 Domain of unknown function (DUF4040) J6335_02350 PF01259 SAICAR synthetase J6335_02355 PF05099 Tellurite resistance protein TerB J6335_02355 PF00226 DnaJ domain J6335_02365 PF00834 Ribulose-phosphate 3 epimerase family J6335_02375 PF00781 Diacylglycerol kinase catalytic domain J6335_02380 PF04715 Anthranilate synthase component I, N terminal region J6335_02380 PF00425 chorismate binding enzyme J6335_02395 PF00117 Glutamine amidotransferase class-I J6335_02405 PF02885 Glycosyl transferase family, helical bundle domain J6335_02405 PF00591 Glycosyl transferase family, a/b domain J6335_02410 PF00218 Indole-3-glycerol phosphate synthase J6335_02420 PF00325 Bacterial regulatory proteins, crp family J6335_02420 PF00027 Cyclic nucleotide-binding domain J6335_02425 PF02675 S-adenosylmethionine decarboxylase J6335_02430 PF00893 Small Multidrug Resistance protein J6335_02435 PF03232 Ubiquinone biosynthesis protein COQ7 J6335_02440 PF00572 Ribosomal protein L13 J6335_02445 PF00380 Ribosomal protein S9/S16 J6335_02460 PF00293 NUDIX domain J6335_02470 PF00210 Ferritin-like domain J6335_02475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J6335_02475 PF00072 Response regulator receiver domain J6335_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_02475 PF00672 HAMP domain J6335_02475 PF01627 Hpt domain J6335_02475 PF00512 His Kinase A (phospho-acceptor) domain J6335_02480 PF00072 Response regulator receiver domain J6335_02480 PF00486 Transcriptional regulatory protein, C terminal J6335_02500 PF01521 Iron-sulphur cluster biosynthesis J6335_02510 PF00293 NUDIX domain J6335_02510 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain J6335_02510 PF09297 NADH pyrophosphatase zinc ribbon domain J6335_02515 PF17113 Regulatory signalling modulator protein AmpE J6335_02515 PF03186 CobD/Cbib protein J6335_02530 PF07690 Major Facilitator Superfamily J6335_02535 PF03466 LysR substrate binding domain J6335_02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_02540 PF07690 Major Facilitator Superfamily J6335_02545 PF12805 FUSC-like inner membrane protein yccS J6335_02555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J6335_02555 PF02843 Phosphoribosylglycinamide synthetase, C domain J6335_02555 PF02844 Phosphoribosylglycinamide synthetase, N domain J6335_02565 PF01808 AICARFT/IMPCHase bienzyme J6335_02565 PF02142 MGS-like domain J6335_02570 PF01066 CDP-alcohol phosphatidyltransferase J6335_02575 PF12146 Serine aminopeptidase, S33 J6335_02575 PF12147 Putative methyltransferase J6335_02580 PF00782 Dual specificity phosphatase, catalytic domain J6335_02610 PF02954 Bacterial regulatory protein, Fis family J6335_02620 PF01381 Helix-turn-helix J6335_02645 PF02785 Biotin carboxylase C-terminal domain J6335_02645 PF00289 Biotin carboxylase, N-terminal domain J6335_02645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J6335_02655 PF00364 Biotin-requiring enzyme J6335_02660 PF01220 Dehydroquinase class II J6335_02665 PF11412 Disulphide bond corrector protein DsbC J6335_02665 PF02683 Cytochrome C biogenesis protein transmembrane region J6335_02670 PF03091 CutA1 divalent ion tolerance protein J6335_02685 PF00166 Chaperonin 10 Kd subunit J6335_02690 PF00118 TCP-1/cpn60 chaperonin family J6335_02700 PF00593 TonB dependent receptor J6335_02700 PF07715 TonB-dependent Receptor Plug Domain J6335_02705 PF07804 HipA-like C-terminal domain J6335_02710 PF00793 DAHP synthetase I family J6335_02725 PF08450 SMP-30/Gluconolactonase/LRE-like region J6335_02735 PF08335 GlnD PII-uridylyltransferase J6335_02735 PF03710 Glutamate-ammonia ligase adenylyltransferase J6335_02740 PF02592 Putative vitamin uptake transporter J6335_02760 PF05598 Transposase domain (DUF772) J6335_02760 PF01609 Transposase DDE domain J6335_02780 PF00881 Nitroreductase family J6335_02785 PF04264 YceI-like domain J6335_02815 PF16957 Malonate decarboxylase, alpha subunit, transporter J6335_02820 PF06857 Malonate decarboxylase delta subunit (MdcD) J6335_02825 PF01039 Carboxyl transferase domain J6335_02835 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG J6335_02840 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase J6335_02845 PF00698 Acyl transferase domain J6335_02855 PF07729 FCD domain J6335_02855 PF00392 Bacterial regulatory proteins, gntR family J6335_02895 PF07745 Glycosyl hydrolase family 53 J6335_02900 PF17831 Pyruvate dehydrogenase E1 component middle domain J6335_02900 PF00456 Transketolase, thiamine diphosphate binding domain J6335_02910 PF00872 Transposase, Mutator family J6335_02925 PF00106 short chain dehydrogenase J6335_02950 PF00106 short chain dehydrogenase J6335_02960 PF13409 Glutathione S-transferase, N-terminal domain J6335_03015 PF07759 Protein of unknown function (DUF1615) J6335_03020 PF00990 Diguanylate cyclase, GGDEF domain J6335_03025 PF02082 Transcriptional regulator J6335_03030 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_03050 PF00892 EamA-like transporter family J6335_03055 PF03330 Lytic transglycolase J6335_03060 PF00553 Cellulose binding domain J6335_03060 PF00041 Fibronectin type III domain J6335_03060 PF01341 Glycosyl hydrolases family 6 J6335_03070 PF00324 Amino acid permease J6335_03080 PF01544 CorA-like Mg2+ transporter protein J6335_03095 PF01204 Trehalase J6335_03105 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J6335_03105 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J6335_03125 PF00563 EAL domain J6335_03125 PF00990 Diguanylate cyclase, GGDEF domain J6335_03125 PF05231 MASE1 J6335_03125 PF08447 PAS fold J6335_03125 PF08448 PAS fold J6335_03125 PF13426 PAS domain J6335_03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_03135 PF00512 His Kinase A (phospho-acceptor) domain J6335_03135 PF09456 RcsC Alpha-Beta-Loop (ABL) J6335_03135 PF00072 Response regulator receiver domain J6335_03145 PF03797 Autotransporter beta-domain J6335_03165 PF13632 Glycosyl transferase family group 2 J6335_03175 PF06580 Histidine kinase J6335_03175 PF07694 5TMR of 5TMR-LYT J6335_03180 PF04397 LytTr DNA-binding domain J6335_03180 PF00072 Response regulator receiver domain J6335_03185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J6335_03185 PF03900 Porphobilinogen deaminase, C-terminal domain J6335_03220 PF00326 Prolyl oligopeptidase family J6335_03220 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J6335_03230 PF00155 Aminotransferase class I and II J6335_03235 PF00326 Prolyl oligopeptidase family J6335_03235 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain J6335_03240 PF04304 Protein of unknown function (DUF454) J6335_03250 PF01678 Diaminopimelate epimerase J6335_03260 PF02899 Phage integrase, N-terminal SAM-like domain J6335_03260 PF00589 Phage integrase family J6335_03265 PF00227 Proteasome subunit J6335_03270 PF00004 ATPase family associated with various cellular activities (AAA) J6335_03270 PF07724 AAA domain (Cdc48 subfamily) J6335_03270 PF10431 C-terminal, D2-small domain, of ClpB protein J6335_03280 PF13673 Acetyltransferase (GNAT) domain J6335_03285 PF13533 Biotin-lipoyl like J6335_03295 PF01209 ubiE/COQ5 methyltransferase family J6335_03300 PF00990 Diguanylate cyclase, GGDEF domain J6335_03300 PF03707 Bacterial signalling protein N terminal repeat J6335_03300 PF00563 EAL domain J6335_03305 PF01433 Peptidase family M1 domain J6335_03305 PF11838 ERAP1-like C-terminal domain J6335_03320 PF13360 PQQ-like domain J6335_03325 PF00497 Bacterial extracellular solute-binding proteins, family 3 J6335_03340 PF08240 Alcohol dehydrogenase GroES-like domain J6335_03340 PF00107 Zinc-binding dehydrogenase J6335_03350 PF02954 Bacterial regulatory protein, Fis family J6335_03350 PF01590 GAF domain J6335_03350 PF00158 Sigma-54 interaction domain J6335_03365 PF00294 pfkB family carbohydrate kinase J6335_03375 PF04085 rod shape-determining protein MreC J6335_03385 PF03717 Penicillin-binding Protein dimerisation domain J6335_03385 PF00905 Penicillin binding protein transpeptidase domain J6335_03390 PF01098 Cell cycle protein J6335_03395 PF02534 Type IV secretory system Conjugative DNA transfer J6335_03405 PF05598 Transposase domain (DUF772) J6335_03405 PF01609 Transposase DDE domain J6335_03425 PF00295 Glycosyl hydrolases family 28 J6335_03430 PF13406 Transglycosylase SLT domain J6335_03435 PF03330 Lytic transglycolase J6335_03435 PF05036 Sporulation related domain J6335_03440 PF07943 Penicillin-binding protein 5, C-terminal domain J6335_03440 PF00768 D-alanyl-D-alanine carboxypeptidase J6335_03450 PF04359 Protein of unknown function (DUF493) J6335_03455 PF03099 Biotin/lipoate A/B protein ligase family J6335_03460 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family J6335_03460 PF04055 Radical SAM superfamily J6335_03465 PF11818 C-terminal domain of tail specific protease (DUF3340) J6335_03465 PF00595 PDZ domain J6335_03465 PF03572 Peptidase family S41 J6335_03465 PF17804 Tail specific protease N-terminal domain J6335_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_03475 PF03466 LysR substrate binding domain J6335_03485 PF01467 Cytidylyltransferase-like J6335_03485 PF00293 NUDIX domain J6335_03520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J6335_03520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J6335_03525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J6335_03525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J6335_03530 PF04972 BON domain J6335_03535 PF00360 Phytochrome region J6335_03535 PF00512 His Kinase A (phospho-acceptor) domain J6335_03535 PF08446 PAS fold J6335_03535 PF01590 GAF domain J6335_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_03540 PF00072 Response regulator receiver domain J6335_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_03545 PF00512 His Kinase A (phospho-acceptor) domain J6335_03550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J6335_03595 PF00263 Bacterial type II and III secretion system protein J6335_03595 PF03958 Bacterial type II/III secretion system short domain J6335_03600 PF00437 Type II/IV secretion system protein J6335_03605 PF00482 Type II secretion system (T2SS), protein F J6335_03610 PF07963 Prokaryotic N-terminal methylation motif J6335_03610 PF08334 Type II secretion system (T2SS), protein G J6335_03615 PF12019 Type II transport protein GspH J6335_03615 PF07963 Prokaryotic N-terminal methylation motif J6335_03620 PF02501 Type II secretion system (T2SS), protein I J6335_03620 PF07963 Prokaryotic N-terminal methylation motif J6335_03625 PF07963 Prokaryotic N-terminal methylation motif J6335_03625 PF11612 Type II secretion system (T2SS), protein J J6335_03630 PF03934 Type II secretion system (T2SS), protein K J6335_03650 PF07702 UTRA domain J6335_03650 PF00392 Bacterial regulatory proteins, gntR family J6335_03655 PF07690 Major Facilitator Superfamily J6335_03660 PF00356 Bacterial regulatory proteins, lacI family J6335_03665 PF01380 SIS domain J6335_03670 PF01979 Amidohydrolase family J6335_03680 PF01966 HD domain J6335_03680 PF01743 Poly A polymerase head domain J6335_03680 PF12627 Probable RNA and SrmB- binding site of polymerase A J6335_03685 PF01464 Transglycosylase SLT domain J6335_03685 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J6335_03690 PF07715 TonB-dependent Receptor Plug Domain J6335_03690 PF00593 TonB dependent receptor J6335_03695 PF10458 Valyl tRNA synthetase tRNA binding arm J6335_03695 PF00133 tRNA synthetases class I (I, L, M and V) J6335_03695 PF08264 Anticodon-binding domain of tRNA J6335_03710 PF02789 Cytosol aminopeptidase family, N-terminal domain J6335_03710 PF00883 Cytosol aminopeptidase family, catalytic domain J6335_03720 PF03739 Lipopolysaccharide export system permease LptF/LptG J6335_03735 PF02899 Phage integrase, N-terminal SAM-like domain J6335_03735 PF00589 Phage integrase family J6335_03745 PF10411 Disulfide bond isomerase protein N-terminus J6335_03745 PF13098 Thioredoxin-like domain J6335_03750 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J6335_03750 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J6335_03750 PF02769 AIR synthase related protein, C-terminal domain J6335_03755 PF13018 Extended Signal Peptide of Type V secretion system J6335_03755 PF03895 YadA-like membrane anchor domain J6335_03755 PF05658 Head domain of trimeric autotransporter adhesin J6335_03755 PF05662 Coiled stalk of trimeric autotransporter adhesin J6335_03760 PF04151 Bacterial pre-peptidase C-terminal domain J6335_03760 PF00082 Subtilase family J6335_03765 PF05662 Coiled stalk of trimeric autotransporter adhesin J6335_03765 PF13018 Extended Signal Peptide of Type V secretion system J6335_03765 PF03895 YadA-like membrane anchor domain J6335_03765 PF05658 Head domain of trimeric autotransporter adhesin J6335_03770 PF04151 Bacterial pre-peptidase C-terminal domain J6335_03770 PF00082 Subtilase family J6335_03775 PF00437 Type II/IV secretion system protein J6335_03775 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J6335_03780 PF00482 Type II secretion system (T2SS), protein F J6335_03785 PF08334 Type II secretion system (T2SS), protein G J6335_03790 PF12019 Type II transport protein GspH J6335_03795 PF07963 Prokaryotic N-terminal methylation motif J6335_03805 PF03934 Type II secretion system (T2SS), protein K J6335_03810 PF05137 Fimbrial assembly protein (PilN) J6335_03815 PF10741 Type II secretion system (T2SS), protein M subtype b J6335_03825 PF00263 Bacterial type II and III secretion system protein J6335_03825 PF03958 Bacterial type II/III secretion system short domain J6335_03835 PF07702 UTRA domain J6335_03835 PF00392 Bacterial regulatory proteins, gntR family J6335_03845 PF00593 TonB dependent receptor J6335_03845 PF07715 TonB-dependent Receptor Plug Domain J6335_03905 PF07238 PilZ domain J6335_03905 PF00535 Glycosyl transferase family 2 J6335_03905 PF03552 Cellulose synthase J6335_03910 PF03170 Bacterial cellulose synthase subunit J6335_03915 PF01270 Glycosyl hydrolases family 8 J6335_03935 PF03960 ArsC family J6335_03940 PF01327 Polypeptide deformylase J6335_03945 PF00005 ABC transporter J6335_03945 PF12848 ABC transporter J6335_03955 PF00464 Serine hydroxymethyltransferase J6335_03960 PF03477 ATP cone domain J6335_03970 PF01872 RibD C-terminal domain J6335_03970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J6335_03980 PF00677 Lumazine binding domain J6335_03985 PF00925 GTP cyclohydrolase II J6335_03985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J6335_03990 PF00885 6,7-dimethyl-8-ribityllumazine synthase J6335_03995 PF01029 NusB family J6335_04000 PF00586 AIR synthase related protein, N-terminal domain J6335_04000 PF02769 AIR synthase related protein, C-terminal domain J6335_04015 PF03814 Potassium-transporting ATPase A subunit J6335_04025 PF02669 K+-transporting ATPase, c chain J6335_04030 PF00512 His Kinase A (phospho-acceptor) domain J6335_04030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_04030 PF02702 Osmosensitive K+ channel His kinase sensor domain J6335_04030 PF13493 Domain of unknown function (DUF4118) J6335_04030 PF13492 GAF domain J6335_04035 PF00072 Response regulator receiver domain J6335_04035 PF00486 Transcriptional regulatory protein, C terminal J6335_04045 PF02913 FAD linked oxidases, C-terminal domain J6335_04045 PF01565 FAD binding domain J6335_04050 PF04307 LexA-binding, inner membrane-associated putative hydrolase J6335_04055 PF02021 Uncharacterised protein family UPF0102 J6335_04060 PF04348 LppC putative lipoprotein J6335_04065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J6335_04085 PF02381 MraZ protein, putative antitoxin-like J6335_04090 PF01795 MraW methylase family J6335_04095 PF04999 Cell division protein FtsL J6335_04100 PF03717 Penicillin-binding Protein dimerisation domain J6335_04100 PF00905 Penicillin binding protein transpeptidase domain J6335_04105 PF08245 Mur ligase middle domain J6335_04105 PF01225 Mur ligase family, catalytic domain J6335_04105 PF02875 Mur ligase family, glutamate ligase domain J6335_04110 PF01225 Mur ligase family, catalytic domain J6335_04110 PF02875 Mur ligase family, glutamate ligase domain J6335_04110 PF08245 Mur ligase middle domain J6335_04115 PF00953 Glycosyl transferase family 4 J6335_04120 PF01098 Cell cycle protein J6335_04125 PF04101 Glycosyltransferase family 28 C-terminal domain J6335_04125 PF03033 Glycosyltransferase family 28 N-terminal domain J6335_04130 PF01225 Mur ligase family, catalytic domain J6335_04130 PF02875 Mur ligase family, glutamate ligase domain J6335_04130 PF08245 Mur ligase middle domain J6335_04135 PF01820 D-ala D-ala ligase N-terminus J6335_04135 PF07478 D-ala D-ala ligase C-terminus J6335_04140 PF08478 POTRA domain, FtsQ-type J6335_04140 PF03799 Cell division protein FtsQ J6335_04145 PF02491 SHS2 domain inserted in FTSA J6335_04150 PF12327 FtsZ family, C-terminal domain J6335_04150 PF00091 Tubulin/FtsZ family, GTPase domain J6335_04155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J6335_04165 PF01476 LysM domain J6335_04165 PF08525 Opacity-associated protein A N-terminal motif J6335_04165 PF01551 Peptidase family M23 J6335_04170 PF07516 SecA Wing and Scaffold domain J6335_04170 PF07517 SecA DEAD-like domain J6335_04170 PF02810 SEC-C motif J6335_04170 PF01043 SecA preprotein cross-linking domain J6335_04175 PF00293 NUDIX domain J6335_04185 PF02219 Methylenetetrahydrofolate reductase J6335_04195 PF08659 KR domain J6335_04195 PF00698 Acyl transferase domain J6335_04195 PF08240 Alcohol dehydrogenase GroES-like domain J6335_04195 PF00107 Zinc-binding dehydrogenase J6335_04195 PF16197 Ketoacyl-synthetase C-terminal extension J6335_04195 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_04195 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_04195 PF00550 Phosphopantetheine attachment site J6335_04195 PF14765 Polyketide synthase dehydratase J6335_04200 PF00082 Subtilase family J6335_04200 PF09286 Pro-kumamolisin, activation domain J6335_04205 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J6335_04210 PF00128 Alpha amylase, catalytic domain J6335_04235 PF00685 Sulfotransferase domain J6335_04245 PF13649 Methyltransferase domain J6335_04250 PF05221 S-adenosyl-L-homocysteine hydrolase J6335_04250 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain J6335_04260 PF00311 Phosphoenolpyruvate carboxylase J6335_04280 PF00691 OmpA family J6335_04280 PF01389 OmpA-like transmembrane domain J6335_04295 PF00328 Histidine phosphatase superfamily (branch 2) J6335_04300 PF02773 S-adenosylmethionine synthetase, C-terminal domain J6335_04300 PF02772 S-adenosylmethionine synthetase, central domain J6335_04300 PF00438 S-adenosylmethionine synthetase, N-terminal domain J6335_04310 PF13649 Methyltransferase domain J6335_04315 PF01207 Dihydrouridine synthase (Dus) J6335_04325 PF00294 pfkB family carbohydrate kinase J6335_04330 PF01773 Na+ dependent nucleoside transporter N-terminus J6335_04330 PF07662 Na+ dependent nucleoside transporter C-terminus J6335_04330 PF07670 Nucleoside recognition J6335_04335 PF00248 Aldo/keto reductase family J6335_04345 PF07715 TonB-dependent Receptor Plug Domain J6335_04345 PF00593 TonB dependent receptor J6335_04365 PF00528 Binding-protein-dependent transport system inner membrane component J6335_04370 PF00005 ABC transporter J6335_04380 PF02668 Taurine catabolism dioxygenase TauD, TfdA family J6335_04390 PF00005 ABC transporter J6335_04395 PF13472 GDSL-like Lipase/Acylhydrolase family J6335_04400 PF00486 Transcriptional regulatory protein, C terminal J6335_04400 PF00072 Response regulator receiver domain J6335_04405 PF00512 His Kinase A (phospho-acceptor) domain J6335_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_04405 PF08521 Two-component sensor kinase N-terminal J6335_04415 PF01219 Prokaryotic diacylglycerol kinase J6335_04425 PF04536 TPM domain J6335_04435 PF01790 Prolipoprotein diacylglyceryl transferase J6335_04440 PF00303 Thymidylate synthase J6335_04450 PF00186 Dihydrofolate reductase J6335_04455 PF00149 Calcineurin-like phosphoesterase J6335_04460 PF04379 ApaG domain J6335_04465 PF00398 Ribosomal RNA adenine dimethylase J6335_04470 PF04166 Pyridoxal phosphate biosynthetic protein PdxA J6335_04475 PF00639 PPIC-type PPIASE domain J6335_04475 PF09312 SurA N-terminal domain J6335_04480 PF04453 LPS transport system D J6335_04480 PF03968 OstA-like protein J6335_04490 PF00850 Histone deacetylase domain J6335_04495 PF01923 Cobalamin adenosyltransferase J6335_04505 PF01494 FAD binding domain J6335_04510 PF01494 FAD binding domain J6335_04530 PF00392 Bacterial regulatory proteins, gntR family J6335_04530 PF07729 FCD domain J6335_04535 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J6335_04540 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit J6335_04540 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J6335_04545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_04545 PF03466 LysR substrate binding domain J6335_04550 PF00501 AMP-binding enzyme J6335_04550 PF13193 AMP-binding enzyme C-terminal domain J6335_04560 PF00378 Enoyl-CoA hydratase/isomerase J6335_04580 PF08450 SMP-30/Gluconolactonase/LRE-like region J6335_04585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J6335_04585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J6335_04590 PF01728 FtsJ-like methyltransferase J6335_04590 PF18125 RlmM ferredoxin-like domain J6335_04615 PF00892 EamA-like transporter family J6335_04625 PF00749 tRNA synthetases class I (E and Q), catalytic domain J6335_04625 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J6335_04640 PF00072 Response regulator receiver domain J6335_04640 PF00990 Diguanylate cyclase, GGDEF domain J6335_04645 PF17149 Periplasmic sensor domain found in signal transduction proteins J6335_04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_04645 PF00072 Response regulator receiver domain J6335_04645 PF00672 HAMP domain J6335_04645 PF00512 His Kinase A (phospho-acceptor) domain J6335_04645 PF01627 Hpt domain J6335_04650 PF00196 Bacterial regulatory proteins, luxR family J6335_04650 PF00072 Response regulator receiver domain J6335_04660 PF01625 Peptide methionine sulfoxide reductase J6335_04675 PF00923 Transaldolase/Fructose-6-phosphate aldolase J6335_04680 PF01272 Transcription elongation factor, GreA/GreB, C-term J6335_04680 PF14760 Rnk N-terminus J6335_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_04685 PF03466 LysR substrate binding domain J6335_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_04690 PF13192 Thioredoxin domain J6335_04695 PF10417 C-terminal domain of 1-Cys peroxiredoxin J6335_04695 PF00578 AhpC/TSA family J6335_04700 PF05175 Methyltransferase small domain J6335_04700 PF17827 PrmC N-terminal domain J6335_04705 PF00561 alpha/beta hydrolase fold J6335_04715 PF00293 NUDIX domain J6335_04720 PF01367 5'-3' exonuclease, C-terminal SAM fold J6335_04720 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J6335_04720 PF00476 DNA polymerase family A J6335_04720 PF01612 3'-5' exonuclease J6335_04760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J6335_04760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J6335_04760 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J6335_04775 PF01063 Amino-transferase class IV J6335_04780 PF00082 Subtilase family J6335_04780 PF04151 Bacterial pre-peptidase C-terminal domain J6335_04785 PF00082 Subtilase family J6335_04785 PF04151 Bacterial pre-peptidase C-terminal domain J6335_04790 PF00082 Subtilase family J6335_04790 PF04151 Bacterial pre-peptidase C-terminal domain J6335_04795 PF04073 Aminoacyl-tRNA editing domain J6335_04805 PF17189 Glycosyl hydrolase family 30 beta sandwich domain J6335_04805 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain J6335_04815 PF03358 NADPH-dependent FMN reductase J6335_04820 PF03631 Virulence factor BrkB J6335_04825 PF08534 Redoxin J6335_04830 PF00708 Acylphosphatase J6335_04840 PF03976 Polyphosphate kinase 2 (PPK2) J6335_04845 PF00994 Probable molybdopterin binding domain J6335_04855 PF03462 PCRF domain J6335_04855 PF00472 RF-1 domain J6335_04860 PF01488 Shikimate / quinate 5-dehydrogenase J6335_04860 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J6335_04860 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J6335_04870 PF03550 Outer membrane lipoprotein LolB J6335_04875 PF08544 GHMP kinases C terminal J6335_04875 PF00288 GHMP kinases N terminal domain J6335_04885 PF14572 Phosphoribosyl synthetase-associated domain J6335_04885 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J6335_04890 PF01386 Ribosomal L25p family J6335_04890 PF14693 Ribosomal protein TL5, C-terminal domain J6335_04895 PF01195 Peptidyl-tRNA hydrolase J6335_04900 PF06071 Protein of unknown function (DUF933) J6335_04900 PF01926 50S ribosome-binding GTPase J6335_04920 PF03143 Elongation factor Tu C-terminal domain J6335_04920 PF00009 Elongation factor Tu GTP binding domain J6335_04920 PF03144 Elongation factor Tu domain 2 J6335_04930 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J6335_04935 PF00467 KOW motif J6335_04935 PF02357 Transcription termination factor nusG J6335_04940 PF00298 Ribosomal protein L11, RNA binding domain J6335_04940 PF03946 Ribosomal protein L11, N-terminal domain J6335_04945 PF00687 Ribosomal protein L1p/L10e family J6335_04950 PF00466 Ribosomal protein L10 J6335_04955 PF16320 Ribosomal protein L7/L12 dimerisation domain J6335_04955 PF00542 Ribosomal protein L7/L12 C-terminal domain J6335_04960 PF04561 RNA polymerase Rpb2, domain 2 J6335_04960 PF04565 RNA polymerase Rpb2, domain 3 J6335_04960 PF10385 RNA polymerase beta subunit external 1 domain J6335_04960 PF00562 RNA polymerase Rpb2, domain 6 J6335_04960 PF04560 RNA polymerase Rpb2, domain 7 J6335_04960 PF04563 RNA polymerase beta subunit J6335_04965 PF04997 RNA polymerase Rpb1, domain 1 J6335_04965 PF00623 RNA polymerase Rpb1, domain 2 J6335_04965 PF04983 RNA polymerase Rpb1, domain 3 J6335_04965 PF05000 RNA polymerase Rpb1, domain 4 J6335_04965 PF04998 RNA polymerase Rpb1, domain 5 J6335_04970 PF00164 Ribosomal protein S12/S23 J6335_04975 PF00177 Ribosomal protein S7p/S5e J6335_04980 PF14492 Elongation Factor G, domain II J6335_04980 PF03764 Elongation factor G, domain IV J6335_04980 PF00009 Elongation factor Tu GTP binding domain J6335_04980 PF03144 Elongation factor Tu domain 2 J6335_04980 PF00679 Elongation factor G C-terminus J6335_04985 PF00009 Elongation factor Tu GTP binding domain J6335_04985 PF03144 Elongation factor Tu domain 2 J6335_04985 PF03143 Elongation factor Tu C-terminal domain J6335_05000 PF00872 Transposase, Mutator family J6335_05005 PF00338 Ribosomal protein S10p/S20e J6335_05010 PF00297 Ribosomal protein L3 J6335_05015 PF00573 Ribosomal protein L4/L1 family J6335_05020 PF00276 Ribosomal protein L23 J6335_05025 PF03947 Ribosomal Proteins L2, C-terminal domain J6335_05025 PF00181 Ribosomal Proteins L2, RNA binding domain J6335_05030 PF00203 Ribosomal protein S19 J6335_05035 PF00237 Ribosomal protein L22p/L17e J6335_05040 PF07650 KH domain J6335_05040 PF00189 Ribosomal protein S3, C-terminal domain J6335_05045 PF00252 Ribosomal protein L16p/L10e J6335_05050 PF00831 Ribosomal L29 protein J6335_05055 PF00366 Ribosomal protein S17 J6335_05060 PF00238 Ribosomal protein L14p/L23e J6335_05065 PF00467 KOW motif J6335_05065 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J6335_05070 PF00673 ribosomal L5P family C-terminus J6335_05070 PF00281 Ribosomal protein L5 J6335_05075 PF00253 Ribosomal protein S14p/S29e J6335_05080 PF00410 Ribosomal protein S8 J6335_05085 PF00347 Ribosomal protein L6 J6335_05090 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J6335_05095 PF00333 Ribosomal protein S5, N-terminal domain J6335_05095 PF03719 Ribosomal protein S5, C-terminal domain J6335_05100 PF00327 Ribosomal protein L30p/L7e J6335_05105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J6335_05110 PF00344 SecY translocase J6335_05115 PF00416 Ribosomal protein S13/S18 J6335_05120 PF00411 Ribosomal protein S11 J6335_05125 PF00163 Ribosomal protein S4/S9 N-terminal domain J6335_05125 PF01479 S4 domain J6335_05130 PF01000 RNA polymerase Rpb3/RpoA insert domain J6335_05130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J6335_05130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J6335_05135 PF01196 Ribosomal protein L17 J6335_05140 PF02600 Disulfide bond formation protein DsbB J6335_05160 PF01474 Class-II DAHP synthetase family J6335_05170 PF01425 Amidase J6335_05180 PF00679 Elongation factor G C-terminus J6335_05180 PF00009 Elongation factor Tu GTP binding domain J6335_05180 PF03144 Elongation factor Tu domain 2 J6335_05185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J6335_05190 PF00056 lactate/malate dehydrogenase, NAD binding domain J6335_05190 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J6335_05195 PF00043 Glutathione S-transferase, C-terminal domain J6335_05195 PF02798 Glutathione S-transferase, N-terminal domain J6335_05210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J6335_05210 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_05215 PF08240 Alcohol dehydrogenase GroES-like domain J6335_05215 PF00107 Zinc-binding dehydrogenase J6335_05220 PF00872 Transposase, Mutator family J6335_05225 PF05598 Transposase domain (DUF772) J6335_05225 PF01609 Transposase DDE domain J6335_05230 PF00223 Photosystem I psaA/psaB protein J6335_05230 PF00691 OmpA family J6335_05240 PF00849 RNA pseudouridylate synthase J6335_05250 PF00155 Aminotransferase class I and II J6335_05260 PF00528 Binding-protein-dependent transport system inner membrane component J6335_05265 PF00528 Binding-protein-dependent transport system inner membrane component J6335_05270 PF12857 TOBE-like domain J6335_05270 PF17850 CysA C-terminal regulatory domain J6335_05270 PF00005 ABC transporter J6335_05280 PF00872 Transposase, Mutator family J6335_05285 PF08240 Alcohol dehydrogenase GroES-like domain J6335_05285 PF00107 Zinc-binding dehydrogenase J6335_05295 PF05506 Domain of unknown function (DUF756) J6335_05295 PF04185 Phosphoesterase family J6335_05300 PF10459 Peptidase S46 J6335_05305 PF00300 Histidine phosphatase superfamily (branch 1) J6335_05315 PF02875 Mur ligase family, glutamate ligase domain J6335_05315 PF08245 Mur ligase middle domain J6335_05330 PF00156 Phosphoribosyl transferase domain J6335_05335 PF04305 Protein of unknown function (DUF455) J6335_05350 PF00149 Calcineurin-like phosphoesterase J6335_05355 PF01569 PAP2 superfamily J6335_05360 PF00534 Glycosyl transferases group 1 J6335_05360 PF13439 Glycosyltransferase Family 4 J6335_05365 PF02541 Ppx/GppA phosphatase family J6335_05370 PF13089 Polyphosphate kinase N-terminal domain J6335_05370 PF17941 Polyphosphate kinase C-terminal domain 1 J6335_05370 PF13090 Polyphosphate kinase C-terminal domain 2 J6335_05370 PF02503 Polyphosphate kinase middle domain J6335_05375 PF00512 His Kinase A (phospho-acceptor) domain J6335_05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_05375 PF11808 Phosphate regulon sensor protein PhoR J6335_05375 PF00989 PAS fold J6335_05380 PF00072 Response regulator receiver domain J6335_05380 PF00486 Transcriptional regulatory protein, C terminal J6335_05385 PF01435 Peptidase family M48 J6335_05385 PF13181 Tetratricopeptide repeat J6335_05390 PF00462 Glutaredoxin J6335_05400 PF00180 Isocitrate/isopropylmalate dehydrogenase J6335_05400 PF18324 Hypothetical protein TT1725 J6335_05440 PF00872 Transposase, Mutator family J6335_05455 PF05698 Bacterial trigger factor protein (TF) C-terminus J6335_05455 PF05697 Bacterial trigger factor protein (TF) J6335_05460 PF00574 Clp protease J6335_05465 PF07724 AAA domain (Cdc48 subfamily) J6335_05465 PF10431 C-terminal, D2-small domain, of ClpB protein J6335_05465 PF06689 ClpX C4-type zinc finger J6335_05470 PF00004 ATPase family associated with various cellular activities (AAA) J6335_05470 PF05362 Lon protease (S16) C-terminal proteolytic domain J6335_05470 PF02190 ATP-dependent protease La (LON) substrate-binding domain J6335_05475 PF00216 Bacterial DNA-binding protein J6335_05500 PF01476 LysM domain J6335_05500 PF05257 CHAP domain J6335_05505 PF16123 Hydroxyacylglutathione hydrolase C-terminus J6335_05505 PF00753 Metallo-beta-lactamase superfamily J6335_05515 PF00075 RNase H J6335_05520 PF00929 Exonuclease J6335_05550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J6335_05560 PF00753 Metallo-beta-lactamase superfamily J6335_05560 PF12706 Beta-lactamase superfamily domain J6335_05565 PF04055 Radical SAM superfamily J6335_05565 PF06463 Molybdenum Cofactor Synthesis C J6335_05575 PF01967 MoaC family J6335_05580 PF02597 ThiS family J6335_05585 PF02391 MoaE protein J6335_05600 PF12169 DNA polymerase III subunits gamma and tau domain III J6335_05600 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding J6335_05600 PF12170 DNA polymerase III tau subunit V interacting with alpha J6335_05605 PF02575 YbaB/EbfC DNA-binding family J6335_05610 PF13662 Toprim domain J6335_05610 PF02132 RecR protein J6335_05615 PF01230 HIT domain J6335_05625 PF01841 Transglutaminase-like superfamily J6335_05625 PF13559 Domain of unknown function (DUF4129) J6335_05625 PF11992 Domain of unknown function (DUF3488) J6335_05635 PF17863 AAA lid domain J6335_05635 PF07726 ATPase family associated with various cellular activities (AAA) J6335_05645 PF02545 Maf-like protein J6335_05650 PF02620 Large ribosomal RNA subunit accumulation protein YceD J6335_05655 PF01783 Ribosomal L32p protein family J6335_05660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J6335_05660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J6335_05670 PF00698 Acyl transferase domain J6335_05680 PF00550 Phosphopantetheine attachment site J6335_05685 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_05685 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_05690 PF00425 chorismate binding enzyme J6335_05690 PF04715 Anthranilate synthase component I, N terminal region J6335_05695 PF02618 YceG-like family J6335_05700 PF09115 DNA polymerase III, delta subunit, C terminal J6335_05725 PF00158 Sigma-54 interaction domain J6335_05725 PF02954 Bacterial regulatory protein, Fis family J6335_05725 PF06506 Propionate catabolism activator J6335_05735 PF00285 Citrate synthase, C-terminal domain J6335_05740 PF00330 Aconitase family (aconitate hydratase) J6335_05740 PF00694 Aconitase C-terminal domain J6335_05750 PF04303 PrpF protein J6335_05755 PF07715 TonB-dependent Receptor Plug Domain J6335_05755 PF00593 TonB dependent receptor J6335_05770 PF11974 Bacterial alpha-2-macroglobulin MG3 domain J6335_05770 PF00207 Alpha-2-macroglobulin family J6335_05770 PF07703 Alpha-2-macroglobulin bait region domain J6335_05770 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain J6335_05770 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain J6335_05770 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain J6335_05770 PF17962 Bacterial macroglobulin domain 6 J6335_05770 PF01835 MG2 domain J6335_05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_05790 PF00512 His Kinase A (phospho-acceptor) domain J6335_05790 PF00989 PAS fold J6335_05795 PF00912 Transglycosylase J6335_05795 PF00905 Penicillin binding protein transpeptidase domain J6335_05795 PF06832 Penicillin-Binding Protein C-terminus Family J6335_05805 PF08534 Redoxin J6335_05815 PF01556 DnaJ C terminal domain J6335_05815 PF00226 DnaJ domain J6335_05820 PF00072 Response regulator receiver domain J6335_05825 PF01145 SPFH domain / Band 7 family J6335_05825 PF12221 Bacterial membrane protein N terminal J6335_05830 PF01145 SPFH domain / Band 7 family J6335_05840 PF00709 Adenylosuccinate synthetase J6335_05845 PF11838 ERAP1-like C-terminal domain J6335_05845 PF01433 Peptidase family M1 domain J6335_05860 PF00440 Bacterial regulatory proteins, tetR family J6335_05885 PF00872 Transposase, Mutator family J6335_05915 PF01256 Carbohydrate kinase J6335_05925 PF00723 Glycosyl hydrolases family 15 J6335_05935 PF17678 Glycosyl hydrolase family 92 N-terminal domain J6335_05935 PF07971 Glycosyl hydrolase family 92 J6335_05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_05975 PF17755 UvrA DNA-binding domain J6335_05985 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J6335_05985 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J6335_05990 PF03450 CO dehydrogenase flavoprotein C-terminal domain J6335_05990 PF00941 FAD binding domain in molybdopterin dehydrogenase J6335_05995 PF01799 [2Fe-2S] binding domain J6335_05995 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_06030 PF01726 LexA DNA binding domain J6335_06030 PF00717 Peptidase S24-like J6335_06055 PF00326 Prolyl oligopeptidase family J6335_06065 PF03169 OPT oligopeptide transporter protein J6335_06090 PF00326 Prolyl oligopeptidase family J6335_06090 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J6335_06090 PF07676 WD40-like Beta Propeller Repeat J6335_06120 PF02311 AraC-like ligand binding domain J6335_06120 PF12833 Helix-turn-helix domain J6335_06130 PF00872 Transposase, Mutator family J6335_06140 PF00199 Catalase J6335_06140 PF06628 Catalase-related immune-responsive J6335_06140 PF18011 C-terminal domain found in long catalases J6335_06145 PF00248 Aldo/keto reductase family J6335_06150 PF00135 Carboxylesterase family J6335_06155 PF02347 Glycine cleavage system P-protein J6335_06175 PF00664 ABC transporter transmembrane region J6335_06175 PF00005 ABC transporter J6335_06175 PF03412 Peptidase C39 family J6335_06180 PF07690 Major Facilitator Superfamily J6335_06210 PF08019 Phosphoethanolamine transferase EptA/EptB J6335_06210 PF00884 Sulfatase J6335_06225 PF00072 Response regulator receiver domain J6335_06225 PF00486 Transcriptional regulatory protein, C terminal J6335_06230 PF08521 Two-component sensor kinase N-terminal J6335_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06230 PF00512 His Kinase A (phospho-acceptor) domain J6335_06240 PF03776 Septum formation topological specificity factor MinE J6335_06245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J6335_06250 PF03775 Septum formation inhibitor MinC, C-terminal domain J6335_06250 PF05209 Septum formation inhibitor MinC, N-terminal domain J6335_06260 PF07730 Histidine kinase J6335_06265 PF00196 Bacterial regulatory proteins, luxR family J6335_06265 PF00072 Response regulator receiver domain J6335_06280 PF00730 HhH-GPD superfamily base excision DNA repair protein J6335_06305 PF02222 ATP-grasp domain J6335_06315 PF04376 Arginine-tRNA-protein transferase, N terminus J6335_06315 PF04377 Arginine-tRNA-protein transferase, C terminus J6335_06330 PF08281 Sigma-70, region 4 J6335_06330 PF04542 Sigma-70 region 2 J6335_06345 PF00378 Enoyl-CoA hydratase/isomerase J6335_06360 PF00005 ABC transporter J6335_06360 PF17755 UvrA DNA-binding domain J6335_06360 PF17760 UvrA interaction domain J6335_06365 PF00829 Ribosomal prokaryotic L21 protein J6335_06370 PF01016 Ribosomal L27 protein J6335_06375 PF01926 50S ribosome-binding GTPase J6335_06375 PF01018 GTP1/OBG J6335_06380 PF01649 Ribosomal protein S20 J6335_06385 PF03023 Lipid II flippase MurJ J6335_06390 PF06574 FAD synthetase J6335_06390 PF01687 Riboflavin kinase J6335_06395 PF00133 tRNA synthetases class I (I, L, M and V) J6335_06395 PF08264 Anticodon-binding domain of tRNA J6335_06395 PF06827 Zinc finger found in FPG and IleRS J6335_06400 PF01252 Signal peptidase (SPase) II J6335_06405 PF02401 LytB protein J6335_06415 PF06481 COX Aromatic Rich Motif J6335_06415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J6335_06420 PF00115 Cytochrome C and Quinol oxidase polypeptide I J6335_06425 PF00510 Cytochrome c oxidase subunit III J6335_06430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV J6335_06440 PF18073 Rubredoxin metal binding domain J6335_06445 PF05656 Protein of unknown function (DUF805) J6335_06455 PF12833 Helix-turn-helix domain J6335_06460 PF00183 Hsp90 protein J6335_06460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06470 PF01740 STAS domain J6335_06470 PF08678 Rsbr N terminal J6335_06475 PF01740 STAS domain J6335_06490 PF00072 Response regulator receiver domain J6335_06490 PF00672 HAMP domain J6335_06490 PF00512 His Kinase A (phospho-acceptor) domain J6335_06490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06490 PF17149 Periplasmic sensor domain found in signal transduction proteins J6335_06490 PF01627 Hpt domain J6335_06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06495 PF00512 His Kinase A (phospho-acceptor) domain J6335_06495 PF08448 PAS fold J6335_06495 PF13188 PAS domain J6335_06495 PF00072 Response regulator receiver domain J6335_06500 PF04616 Glycosyl hydrolases family 43 J6335_06500 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J6335_06505 PF00593 TonB dependent receptor J6335_06505 PF07715 TonB-dependent Receptor Plug Domain J6335_06510 PF00085 Thioredoxin J6335_06515 PF07237 Protein of unknown function (DUF1428) J6335_06520 PF13493 Domain of unknown function (DUF4118) J6335_06520 PF13492 GAF domain J6335_06520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06520 PF00512 His Kinase A (phospho-acceptor) domain J6335_06520 PF02702 Osmosensitive K+ channel His kinase sensor domain J6335_06525 PF01339 CheB methylesterase J6335_06530 PF03705 CheR methyltransferase, all-alpha domain J6335_06530 PF01739 CheR methyltransferase, SAM binding domain J6335_06535 PF00512 His Kinase A (phospho-acceptor) domain J6335_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06535 PF01627 Hpt domain J6335_06535 PF00072 Response regulator receiver domain J6335_06535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J6335_06535 PF00672 HAMP domain J6335_06540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_06540 PF13426 PAS domain J6335_06540 PF00072 Response regulator receiver domain J6335_06545 PF00072 Response regulator receiver domain J6335_06550 PF06964 Alpha-L-arabinofuranosidase C-terminal domain J6335_06555 PF01263 Aldose 1-epimerase J6335_06560 PF01578 Cytochrome C assembly protein J6335_06565 PF00448 SRP54-type protein, GTPase domain J6335_06565 PF02881 SRP54-type protein, helical bundle domain J6335_06565 PF02978 Signal peptide binding domain J6335_06570 PF03060 Nitronate monooxygenase J6335_06575 PF01063 Amino-transferase class IV J6335_06580 PF00886 Ribosomal protein S16 J6335_06585 PF01782 RimM N-terminal domain J6335_06585 PF05239 PRC-barrel domain J6335_06590 PF01746 tRNA (Guanine-1)-methyltransferase J6335_06595 PF01245 Ribosomal protein L19 J6335_06600 PF01554 MatE J6335_06620 PF01479 S4 domain J6335_06625 PF00141 Peroxidase J6335_06635 PF01624 MutS domain I J6335_06635 PF05188 MutS domain II J6335_06635 PF05192 MutS domain III J6335_06635 PF05190 MutS family domain IV J6335_06635 PF00488 MutS domain V J6335_06675 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J6335_06675 PF02837 Glycosyl hydrolases family 2, sugar binding domain J6335_06675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J6335_06675 PF00703 Glycosyl hydrolases family 2 J6335_06675 PF16355 Domain of unknown function (DUF4982) J6335_06680 PF07745 Glycosyl hydrolase family 53 J6335_06690 PF09856 Predicted transcriptional regulator (DUF2083) J6335_06690 PF06114 IrrE N-terminal-like domain J6335_06690 PF01381 Helix-turn-helix J6335_06695 PF00171 Aldehyde dehydrogenase family J6335_06700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_06700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_06700 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_06705 PF00378 Enoyl-CoA hydratase/isomerase J6335_06710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J6335_06710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J6335_06710 PF00378 Enoyl-CoA hydratase/isomerase J6335_06715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J6335_06715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J6335_06720 PF01545 Cation efflux family J6335_06730 PF13181 Tetratricopeptide repeat J6335_06740 PF13181 Tetratricopeptide repeat J6335_06745 PF07715 TonB-dependent Receptor Plug Domain J6335_06745 PF00593 TonB dependent receptor J6335_06750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J6335_06750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J6335_06750 PF00378 Enoyl-CoA hydratase/isomerase J6335_06755 PF08281 Sigma-70, region 4 J6335_06755 PF04542 Sigma-70 region 2 J6335_06765 PF13180 PDZ domain J6335_06770 PF00679 Elongation factor G C-terminus J6335_06770 PF00009 Elongation factor Tu GTP binding domain J6335_06770 PF03144 Elongation factor Tu domain 2 J6335_06770 PF06421 GTP-binding protein LepA C-terminus J6335_06775 PF10502 Signal peptidase, peptidase S26 J6335_06785 PF00035 Double-stranded RNA binding motif J6335_06785 PF14622 Ribonuclease-III-like J6335_06790 PF07650 KH domain J6335_06790 PF01926 50S ribosome-binding GTPase J6335_06795 PF11967 Recombination protein O N terminal J6335_06795 PF02565 Recombination protein O C terminal J6335_06805 PF05958 tRNA (Uracil-5-)-methyltransferase J6335_06810 PF01928 CYTH domain J6335_06815 PF01323 DSBA-like thioredoxin domain J6335_06820 PF01593 Flavin containing amine oxidoreductase J6335_06825 PF04244 Deoxyribodipyrimidine photo-lyase-related protein J6335_06830 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_06835 PF00156 Phosphoribosyl transferase domain J6335_06840 PF01048 Phosphorylase superfamily J6335_06845 PF00313 'Cold-shock' DNA-binding domain J6335_06850 PF01494 FAD binding domain J6335_06860 PF08494 DEAD/H associated J6335_06860 PF00270 DEAD/DEAH box helicase J6335_06860 PF00271 Helicase conserved C-terminal domain J6335_06865 PF04679 ATP dependent DNA ligase C terminal region J6335_06865 PF01068 ATP dependent DNA ligase domain J6335_06865 PF04675 DNA ligase N terminus J6335_06875 PF04675 DNA ligase N terminus J6335_06875 PF04679 ATP dependent DNA ligase C terminal region J6335_06875 PF01068 ATP dependent DNA ligase domain J6335_06895 PF00072 Response regulator receiver domain J6335_06895 PF00990 Diguanylate cyclase, GGDEF domain J6335_06910 PF02803 Thiolase, C-terminal domain J6335_06910 PF00108 Thiolase, N-terminal domain J6335_06915 PF12951 Passenger-associated-transport-repeat J6335_06915 PF00082 Subtilase family J6335_06915 PF03797 Autotransporter beta-domain J6335_06920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J6335_06920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J6335_06930 PF01863 Protein of unknown function DUF45 J6335_06935 PF07043 Protein of unknown function (DUF1328) J6335_06945 PF01258 Prokaryotic dksA/traR C4-type zinc finger J6335_06970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J6335_06980 PF08274 PhnA Zinc-Ribbon J6335_06980 PF03831 PhnA domain J6335_06990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J6335_06995 PF07690 Major Facilitator Superfamily J6335_07030 PF03706 Lysylphosphatidylglycerol synthase TM region J6335_07030 PF09924 Uncharacterised conserved protein (DUF2156) J6335_07040 PF01042 Endoribonuclease L-PSP J6335_07085 PF04542 Sigma-70 region 2 J6335_07085 PF04545 Sigma-70, region 4 J6335_07100 PF04060 Putative Fe-S cluster J6335_07110 PF09334 tRNA synthetases class I (M) J6335_07110 PF01588 Putative tRNA binding domain J6335_07130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J6335_07145 PF00324 Amino acid permease J6335_07150 PF02574 Homocysteine S-methyltransferase J6335_07160 PF02592 Putative vitamin uptake transporter J6335_07180 PF03551 Transcriptional regulator PadR-like family J6335_07200 PF03653 Uncharacterised protein family (UPF0093) J6335_07215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J6335_07220 PF07733 Bacterial DNA polymerase III alpha NTPase domain J6335_07220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J6335_07220 PF14579 Helix-hairpin-helix motif J6335_07220 PF02811 PHP domain J6335_07220 PF01336 OB-fold nucleic acid binding domain J6335_07225 PF01351 Ribonuclease HII J6335_07230 PF02684 Lipid-A-disaccharide synthetase J6335_07235 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J6335_07235 PF00132 Bacterial transferase hexapeptide (six repeats) J6335_07240 PF07977 FabA-like domain J6335_07245 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J6335_07245 PF00132 Bacterial transferase hexapeptide (six repeats) J6335_07255 PF07244 Surface antigen variable number repeat J6335_07255 PF01103 Surface antigen J6335_07260 PF17820 PDZ domain J6335_07260 PF02163 Peptidase family M50 J6335_07265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J6335_07265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J6335_07265 PF13288 DXP reductoisomerase C-terminal domain J6335_07275 PF01255 Putative undecaprenyl diphosphate synthase J6335_07280 PF01765 Ribosome recycling factor J6335_07285 PF00696 Amino acid kinase family J6335_07290 PF00990 Diguanylate cyclase, GGDEF domain J6335_07290 PF00072 Response regulator receiver domain J6335_07295 PF00889 Elongation factor TS J6335_07300 PF00318 Ribosomal protein S2 J6335_07335 PF00557 Metallopeptidase family M24 J6335_07340 PF08335 GlnD PII-uridylyltransferase J6335_07340 PF01966 HD domain J6335_07340 PF01909 Nucleotidyltransferase domain J6335_07345 PF00132 Bacterial transferase hexapeptide (six repeats) J6335_07345 PF14602 Hexapeptide repeat of succinyl-transferase J6335_07345 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J6335_07350 PF03960 ArsC family J6335_07355 PF07687 Peptidase dimerisation domain J6335_07355 PF01546 Peptidase family M20/M25/M40 J6335_07365 PF13537 Glutamine amidotransferase domain J6335_07365 PF00733 Asparagine synthase J6335_07375 PF00593 TonB dependent receptor J6335_07375 PF07715 TonB-dependent Receptor Plug Domain J6335_07380 PF01804 Penicillin amidase J6335_07385 PF00210 Ferritin-like domain J6335_07405 PF03989 DNA gyrase C-terminal domain, beta-propeller J6335_07405 PF00521 DNA gyrase/topoisomerase IV, subunit A J6335_07470 PF02321 Outer membrane efflux protein J6335_07475 PF00529 HlyD membrane-fusion protein of T1SS J6335_07475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_07480 PF07690 Major Facilitator Superfamily J6335_07500 PF14310 Fibronectin type III-like domain J6335_07500 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_07500 PF01915 Glycosyl hydrolase family 3 C-terminal domain J6335_07510 PF00854 POT family J6335_07535 PF12802 MarR family J6335_07540 PF01432 Peptidase family M3 J6335_07545 PF00255 Glutathione peroxidase J6335_07550 PF00970 Oxidoreductase FAD-binding domain J6335_07550 PF00175 Oxidoreductase NAD-binding domain J6335_07555 PF00005 ABC transporter J6335_07560 PF05681 Fumarate hydratase (Fumerase) J6335_07560 PF05683 Fumarase C-terminus J6335_07575 PF00484 Carbonic anhydrase J6335_07580 PF02253 Phospholipase A1 J6335_07590 PF00313 'Cold-shock' DNA-binding domain J6335_07605 PF00899 ThiF family J6335_07610 PF01026 TatD related DNase J6335_07625 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_07625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_07625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_07635 PF13417 Glutathione S-transferase, N-terminal domain J6335_07640 PF00733 Asparagine synthase J6335_07640 PF13537 Glutamine amidotransferase domain J6335_07645 PF03358 NADPH-dependent FMN reductase J6335_07650 PF00772 DnaB-like helicase N terminal domain J6335_07650 PF03796 DnaB-like helicase C terminal domain J6335_07655 PF00875 DNA photolyase J6335_07655 PF03441 FAD binding domain of DNA photolyase J6335_07660 PF05736 OprF membrane domain J6335_07660 PF00691 OmpA family J6335_07670 PF03466 LysR substrate binding domain J6335_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_07685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_07685 PF00529 HlyD membrane-fusion protein of T1SS J6335_07690 PF00873 AcrB/AcrD/AcrF family J6335_07695 PF00106 short chain dehydrogenase J6335_07705 PF00990 Diguanylate cyclase, GGDEF domain J6335_07715 PF00990 Diguanylate cyclase, GGDEF domain J6335_07740 PF01668 SmpB protein J6335_07745 PF03364 Polyketide cyclase / dehydrase and lipid transport J6335_07750 PF03658 RnfH family Ubiquitin J6335_07755 PF04355 SmpA / OmlA family J6335_07760 PF01475 Ferric uptake regulator family J6335_07765 PF02463 RecF/RecN/SMC N terminal domain J6335_07770 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding J6335_07770 PF01628 HrcA protein C terminal domain J6335_07775 PF01025 GrpE J6335_07780 PF00012 Hsp70 protein J6335_07785 PF01556 DnaJ C terminal domain J6335_07785 PF00226 DnaJ domain J6335_07785 PF00684 DnaJ central domain J6335_07790 PF08543 Phosphomethylpyrimidine kinase J6335_07815 PF03412 Peptidase C39 family J6335_07815 PF00005 ABC transporter J6335_07815 PF00664 ABC transporter transmembrane region J6335_07820 PF03466 LysR substrate binding domain J6335_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_07825 PF00664 ABC transporter transmembrane region J6335_07825 PF00005 ABC transporter J6335_07830 PF01205 Uncharacterized protein family UPF0029 J6335_07835 PF03641 Possible lysine decarboxylase J6335_07840 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_07840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J6335_07845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J6335_07845 PF02817 e3 binding domain J6335_07845 PF00364 Biotin-requiring enzyme J6335_07850 PF02779 Transketolase, pyrimidine binding domain J6335_07850 PF00676 Dehydrogenase E1 component J6335_07850 PF16078 2-oxoglutarate dehydrogenase N-terminus J6335_07850 PF16870 2-oxoglutarate dehydrogenase C-terminal J6335_07860 PF08007 Cupin superfamily protein J6335_07870 PF00206 Lyase J6335_07870 PF08328 Adenylosuccinate lyase C-terminal J6335_07880 PF01595 Cyclin M transmembrane N-terminal domain J6335_07880 PF03471 Transporter associated domain J6335_07880 PF00571 CBS domain J6335_07885 PF10415 Fumarase C C-terminus J6335_07885 PF00206 Lyase J6335_07910 PF00005 ABC transporter J6335_07915 PF00392 Bacterial regulatory proteins, gntR family J6335_07925 PF00255 Glutathione peroxidase J6335_07930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J6335_07930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J6335_07940 PF04102 SlyX J6335_07960 PF00356 Bacterial regulatory proteins, lacI family J6335_07965 PF07690 Major Facilitator Superfamily J6335_07970 PF00294 pfkB family carbohydrate kinase J6335_07980 PF02310 B12 binding domain J6335_07980 PF02607 B12 binding domain J6335_07980 PF02965 Vitamin B12 dependent methionine synthase, activation domain J6335_07980 PF00809 Pterin binding enzyme J6335_07980 PF02574 Homocysteine S-methyltransferase J6335_07985 PF00809 Pterin binding enzyme J6335_07985 PF02574 Homocysteine S-methyltransferase J6335_07990 PF01209 ubiE/COQ5 methyltransferase family J6335_07995 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_07995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_07995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_08000 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_08000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_08000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_08015 PF08461 Ribonuclease R winged-helix domain J6335_08015 PF17876 Cold shock domain J6335_08015 PF08206 Ribonuclease B OB domain J6335_08015 PF00575 S1 RNA binding domain J6335_08015 PF00773 RNB domain J6335_08025 PF08032 RNA 2'-O ribose methyltransferase substrate binding J6335_08025 PF00588 SpoU rRNA Methylase family J6335_08035 PF00929 Exonuclease J6335_08045 PF01895 PhoU domain J6335_08050 PF00005 ABC transporter J6335_08055 PF00528 Binding-protein-dependent transport system inner membrane component J6335_08060 PF00528 Binding-protein-dependent transport system inner membrane component J6335_08065 PF12849 PBP superfamily domain J6335_08070 PF12849 PBP superfamily domain J6335_08085 PF00484 Carbonic anhydrase J6335_08090 PF01740 STAS domain J6335_08090 PF00916 Sulfate permease family J6335_08110 PF02254 TrkA-N domain J6335_08110 PF00999 Sodium/hydrogen exchanger family J6335_08120 PF00593 TonB dependent receptor J6335_08120 PF07715 TonB-dependent Receptor Plug Domain J6335_08125 PF00593 TonB dependent receptor J6335_08125 PF07715 TonB-dependent Receptor Plug Domain J6335_08135 PF07715 TonB-dependent Receptor Plug Domain J6335_08135 PF00593 TonB dependent receptor J6335_08140 PF12848 ABC transporter J6335_08140 PF00005 ABC transporter J6335_08150 PF03466 LysR substrate binding domain J6335_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_08160 PF13472 GDSL-like Lipase/Acylhydrolase family J6335_08160 PF07859 alpha/beta hydrolase fold J6335_08170 PF05506 Domain of unknown function (DUF756) J6335_08170 PF04185 Phosphoesterase family J6335_08180 PF07690 Major Facilitator Superfamily J6335_08195 PF00152 tRNA synthetases class II (D, K and N) J6335_08195 PF01336 OB-fold nucleic acid binding domain J6335_08195 PF02938 GAD domain J6335_08210 PF01709 Transcriptional regulator J6335_08215 PF02075 Crossover junction endodeoxyribonuclease RuvC J6335_08220 PF01330 RuvA N terminal domain J6335_08220 PF07499 RuvA, C-terminal domain J6335_08225 PF02705 K+ potassium transporter J6335_08235 PF05496 Holliday junction DNA helicase RuvB P-loop domain J6335_08235 PF05491 RuvB C-terminal winged helix domain J6335_08235 PF17864 RuvB AAA lid domain J6335_08240 PF03061 Thioesterase superfamily J6335_08245 PF01618 MotA/TolQ/ExbB proton channel family J6335_08250 PF02472 Biopolymer transport protein ExbD/TolR J6335_08260 PF07676 WD40-like Beta Propeller Repeat J6335_08260 PF04052 TolB amino-terminal domain J6335_08265 PF00691 OmpA family J6335_08275 PF04055 Radical SAM superfamily J6335_08285 PF06508 Queuosine biosynthesis protein QueC J6335_08290 PF13581 Histidine kinase-like ATPase domain J6335_08290 PF07536 HWE histidine kinase J6335_08290 PF13426 PAS domain J6335_08300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_08300 PF03466 LysR substrate binding domain J6335_08305 PF01810 LysE type translocator J6335_08310 PF02203 Tar ligand binding domain homologue J6335_08310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_08310 PF00672 HAMP domain J6335_08350 PF00270 DEAD/DEAH box helicase J6335_08350 PF00271 Helicase conserved C-terminal domain J6335_08350 PF00570 HRDC domain J6335_08350 PF16124 RecQ zinc-binding J6335_08350 PF09382 RQC domain J6335_08355 PF00210 Ferritin-like domain J6335_08360 PF11898 Domain of unknown function (DUF3418) J6335_08360 PF04408 Helicase associated domain (HA2) J6335_08360 PF00271 Helicase conserved C-terminal domain J6335_08360 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J6335_08360 PF00270 DEAD/DEAH box helicase J6335_08370 PF00872 Transposase, Mutator family J6335_08380 PF02685 Glucokinase J6335_08395 PF04055 Radical SAM superfamily J6335_08395 PF13186 Iron-sulfur cluster-binding domain J6335_08400 PF05402 Coenzyme PQQ synthesis protein D (PqqD) J6335_08405 PF03070 TENA/THI-4/PQQC family J6335_08410 PF12706 Beta-lactamase superfamily domain J6335_08420 PF13291 ACT domain J6335_08420 PF04607 Region found in RelA / SpoT proteins J6335_08420 PF02824 TGS domain J6335_08430 PF00535 Glycosyl transferase family 2 J6335_08435 PF00912 Transglycosylase J6335_08435 PF00905 Penicillin binding protein transpeptidase domain J6335_08435 PF14814 Bifunctional transglycosylase second domain J6335_08445 PF04851 Type III restriction enzyme, res subunit J6335_08445 PF13307 Helicase C-terminal domain J6335_08450 PF00814 Glycoprotease family J6335_08455 PF03747 ADP-ribosylglycohydrolase J6335_08465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain J6335_08465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain J6335_08470 PF00072 Response regulator receiver domain J6335_08475 PF00072 Response regulator receiver domain J6335_08480 PF01584 CheW-like domain J6335_08485 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J6335_08485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_08490 PF01627 Hpt domain J6335_08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_08490 PF00072 Response regulator receiver domain J6335_08490 PF01584 CheW-like domain J6335_08490 PF02895 Signal transducing histidine kinase, homodimeric domain J6335_08505 PF13302 Acetyltransferase (GNAT) domain J6335_08515 PF01112 Asparaginase J6335_08520 PF03932 CutC family J6335_08550 PF01301 Glycosyl hydrolases family 35 J6335_08555 PF17678 Glycosyl hydrolase family 92 N-terminal domain J6335_08555 PF07971 Glycosyl hydrolase family 92 J6335_08565 PF07691 PA14 domain J6335_08565 PF01915 Glycosyl hydrolase family 3 C-terminal domain J6335_08565 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_08565 PF14310 Fibronectin type III-like domain J6335_08575 PF07691 PA14 domain J6335_08575 PF02838 Glycosyl hydrolase family 20, domain 2 J6335_08575 PF00728 Glycosyl hydrolase family 20, catalytic domain J6335_08580 PF01476 LysM domain J6335_08580 PF00704 Glycosyl hydrolases family 18 J6335_08600 PF00460 Flagella basal body rod protein J6335_08600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J6335_08605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J6335_08605 PF00460 Flagella basal body rod protein J6335_08605 PF07559 Flagellar basal body protein FlaE J6335_08610 PF03963 Flagellar hook capping protein - N-terminal region J6335_08615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal J6335_08615 PF00460 Flagella basal body rod protein J6335_08625 PF01584 CheW-like domain J6335_08625 PF00072 Response regulator receiver domain J6335_08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_08645 PF13426 PAS domain J6335_08645 PF00512 His Kinase A (phospho-acceptor) domain J6335_08645 PF00989 PAS fold J6335_08645 PF13188 PAS domain J6335_08650 PF03707 Bacterial signalling protein N terminal repeat J6335_08650 PF00990 Diguanylate cyclase, GGDEF domain J6335_08650 PF00563 EAL domain J6335_08655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_08655 PF07730 Histidine kinase J6335_08660 PF00563 EAL domain J6335_08660 PF00990 Diguanylate cyclase, GGDEF domain J6335_08660 PF03707 Bacterial signalling protein N terminal repeat J6335_08670 PF12729 Four helix bundle sensory module for signal transduction J6335_08670 PF00672 HAMP domain J6335_08670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_08675 PF04356 Protein of unknown function (DUF489) J6335_08685 PF00293 NUDIX domain J6335_08695 PF02617 ATP-dependent Clp protease adaptor protein ClpS J6335_08700 PF02861 Clp amino terminal domain, pathogenicity island component J6335_08700 PF17871 AAA lid domain J6335_08700 PF07724 AAA domain (Cdc48 subfamily) J6335_08700 PF00004 ATPase family associated with various cellular activities (AAA) J6335_08700 PF10431 C-terminal, D2-small domain, of ClpB protein J6335_08705 PF01176 Translation initiation factor 1A / IF-1 J6335_08710 PF03588 Leucyl/phenylalanyl-tRNA protein transferase J6335_08720 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_08725 PF01580 FtsK/SpoIIIE family J6335_08725 PF09397 Ftsk gamma domain J6335_08725 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J6335_08725 PF17854 FtsK alpha domain J6335_08735 PF03548 Outer membrane lipoprotein carrier protein LolA J6335_08745 PF00004 ATPase family associated with various cellular activities (AAA) J6335_08745 PF16193 AAA C-terminal domain J6335_08745 PF12002 MgsA AAA+ ATPase C terminal J6335_08750 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J6335_08755 PF02803 Thiolase, C-terminal domain J6335_08755 PF00108 Thiolase, N-terminal domain J6335_08760 PF00378 Enoyl-CoA hydratase/isomerase J6335_08760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J6335_08760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J6335_08770 PF00334 Nucleoside diphosphate kinase J6335_08775 PF04055 Radical SAM superfamily J6335_08785 PF13464 Domain of unknown function (DUF4115) J6335_08795 PF01011 PQQ enzyme repeat J6335_08795 PF13360 PQQ-like domain J6335_08800 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J6335_08800 PF01926 50S ribosome-binding GTPase J6335_08805 PF03453 MoeA N-terminal region (domain I and II) J6335_08805 PF03454 MoeA C-terminal region (domain IV) J6335_08805 PF00994 Probable molybdopterin binding domain J6335_08810 PF00899 ThiF family J6335_08835 PF00107 Zinc-binding dehydrogenase J6335_08835 PF13823 Alcohol dehydrogenase GroES-associated J6335_08835 PF08240 Alcohol dehydrogenase GroES-like domain J6335_08845 PF03372 Endonuclease/Exonuclease/phosphatase family J6335_08855 PF03453 MoeA N-terminal region (domain I and II) J6335_08855 PF00994 Probable molybdopterin binding domain J6335_08855 PF03454 MoeA C-terminal region (domain IV) J6335_08860 PF12804 MobA-like NTP transferase domain J6335_08885 PF10414 Sirohaem synthase dimerisation region J6335_08885 PF14824 Sirohaem biosynthesis protein central J6335_08885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J6335_08890 PF03861 ANTAR domain J6335_08890 PF00072 Response regulator receiver domain J6335_08900 PF07690 Major Facilitator Superfamily J6335_08905 PF18267 Rubredoxin NAD+ reductase C-terminal domain J6335_08905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J6335_08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_08905 PF04324 BFD-like [2Fe-2S] binding domain J6335_08905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J6335_08915 PF04324 BFD-like [2Fe-2S] binding domain J6335_08915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J6335_08915 PF00384 Molybdopterin oxidoreductase J6335_08915 PF01568 Molydopterin dinucleotide binding domain J6335_08920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J6335_08935 PF05974 Domain of unknown function (DUF892) J6335_08955 PF00990 Diguanylate cyclase, GGDEF domain J6335_08955 PF08448 PAS fold J6335_08955 PF08447 PAS fold J6335_08955 PF00563 EAL domain J6335_08960 PF12951 Passenger-associated-transport-repeat J6335_08960 PF12951 Passenger-associated-transport-repeat J6335_08965 PF00196 Bacterial regulatory proteins, luxR family J6335_08965 PF00072 Response regulator receiver domain J6335_08970 PF00512 His Kinase A (phospho-acceptor) domain J6335_08970 PF13426 PAS domain J6335_08970 PF00072 Response regulator receiver domain J6335_08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_08970 PF08448 PAS fold J6335_08980 PF00873 AcrB/AcrD/AcrF family J6335_08985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_08990 PF03797 Autotransporter beta-domain J6335_08990 PF00082 Subtilase family J6335_09005 PF07995 Glucose / Sorbosone dehydrogenase J6335_09015 PF00872 Transposase, Mutator family J6335_09030 PF05598 Transposase domain (DUF772) J6335_09030 PF01609 Transposase DDE domain J6335_09035 PF00872 Transposase, Mutator family J6335_09110 PF02810 SEC-C motif J6335_09110 PF07516 SecA Wing and Scaffold domain J6335_09110 PF01043 SecA preprotein cross-linking domain J6335_09110 PF07517 SecA DEAD-like domain J6335_09115 PF00872 Transposase, Mutator family J6335_09125 PF12697 Alpha/beta hydrolase family J6335_09125 PF08241 Methyltransferase domain J6335_09140 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J6335_09140 PF02585 GlcNAc-PI de-N-acetylase J6335_09165 PF18272 single-stranded DNA binding TraI N-terminal subdomain J6335_09165 PF07057 DNA helicase TraI J6335_09165 PF18340 DNA relaxase TraI 2B/2B-like domain J6335_09165 PF08751 TrwC relaxase J6335_09235 PF00872 Transposase, Mutator family J6335_09280 PF00872 Transposase, Mutator family J6335_09300 PF13614 AAA domain J6335_09345 PF02810 SEC-C motif J6335_09345 PF03695 Uncharacterised protein family (UPF0149) J6335_09360 PF02796 Helix-turn-helix domain of resolvase J6335_09360 PF00239 Resolvase, N terminal domain J6335_09380 PF00872 Transposase, Mutator family J6335_09415 PF00440 Bacterial regulatory proteins, tetR family J6335_09425 PF01106 NifU-like domain J6335_09430 PF01329 Pterin 4 alpha carbinolamine dehydratase J6335_09440 PF02535 ZIP Zinc transporter J6335_09445 PF11737 Protein of unknown function (DUF3300) J6335_09450 PF00849 RNA pseudouridylate synthase J6335_09450 PF01479 S4 domain J6335_09455 PF12111 Polyribonucleotide phosphorylase C terminal J6335_09455 PF10150 Ribonuclease E/G family J6335_09455 PF00575 S1 RNA binding domain J6335_09460 PF01609 Transposase DDE domain J6335_09460 PF05598 Transposase domain (DUF772) J6335_09465 PF00072 Response regulator receiver domain J6335_09465 PF00196 Bacterial regulatory proteins, luxR family J6335_09470 PF00581 Rhodanese-like domain J6335_09470 PF17773 UPF0176 acylphosphatase like domain J6335_09480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J6335_09490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J6335_09490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J6335_09490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J6335_09515 PF01066 CDP-alcohol phosphatidyltransferase J6335_09520 PF01541 GIY-YIG catalytic domain J6335_09520 PF08459 UvrC Helix-hairpin-helix N-terminal J6335_09520 PF02151 UvrB/uvrC motif J6335_09530 PF01451 Low molecular weight phosphotyrosine protein phosphatase J6335_09535 PF02348 Cytidylyltransferase J6335_09540 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J6335_09545 PF00005 ABC transporter J6335_09545 PF00664 ABC transporter transmembrane region J6335_09555 PF01618 MotA/TolQ/ExbB proton channel family J6335_09560 PF03772 Competence protein J6335_09560 PF00753 Metallo-beta-lactamase superfamily J6335_09570 PF00005 ABC transporter J6335_09575 PF02687 FtsX-like permease family J6335_09575 PF12704 MacB-like periplasmic core domain J6335_09585 PF03937 Flavinator of succinate dehydrogenase J6335_09590 PF13085 2Fe-2S iron-sulfur cluster binding domain J6335_09600 PF00890 FAD binding domain J6335_09600 PF02910 Fumarate reductase flavoprotein C-term J6335_09605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J6335_09610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit J6335_09620 PF01571 Aminomethyltransferase folate-binding domain J6335_09625 PF00005 ABC transporter J6335_09625 PF17912 MalK OB fold domain J6335_09630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J6335_09630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J6335_09635 PF02685 Glucokinase J6335_09640 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J6335_09645 PF00920 Dehydratase family J6335_09650 PF01081 KDPG and KHG aldolase J6335_09655 PF00873 AcrB/AcrD/AcrF family J6335_09660 PF00873 AcrB/AcrD/AcrF family J6335_09665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_09675 PF00034 Cytochrome c J6335_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_09715 PF00512 His Kinase A (phospho-acceptor) domain J6335_09715 PF09308 LuxQ, periplasmic J6335_09715 PF00072 Response regulator receiver domain J6335_09720 PF17674 HHH domain J6335_09720 PF00575 S1 RNA binding domain J6335_09720 PF09371 Tex-like protein N-terminal domain J6335_09720 PF16921 Tex protein YqgF-like domain J6335_09730 PF00355 Rieske [2Fe-2S] domain J6335_09730 PF01266 FAD dependent oxidoreductase J6335_09745 PF00561 alpha/beta hydrolase fold J6335_09755 PF01066 CDP-alcohol phosphatidyltransferase J6335_09775 PF03618 Kinase/pyrophosphorylase J6335_09780 PF00391 PEP-utilising enzyme, mobile domain J6335_09780 PF02896 PEP-utilising enzyme, TIM barrel domain J6335_09780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain J6335_09790 PF00929 Exonuclease J6335_09795 PF14437 MafB19-like deaminase J6335_09800 PF02742 Iron dependent repressor, metal binding and dimerisation domain J6335_09800 PF01325 Iron dependent repressor, N-terminal DNA binding domain J6335_09805 PF01566 Natural resistance-associated macrophage protein J6335_09810 PF00561 alpha/beta hydrolase fold J6335_09825 PF05977 Transmembrane secretion effector J6335_09830 PF07969 Amidohydrolase family J6335_09840 PF00857 Isochorismatase family J6335_09855 PF00196 Bacterial regulatory proteins, luxR family J6335_09855 PF00072 Response regulator receiver domain J6335_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_09880 PF03466 LysR substrate binding domain J6335_09885 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus J6335_09885 PF00361 Proton-conducting membrane transporter J6335_09885 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J6335_09890 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) J6335_09900 PF00107 Zinc-binding dehydrogenase J6335_09900 PF08240 Alcohol dehydrogenase GroES-like domain J6335_09905 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J6335_09910 PF03466 LysR substrate binding domain J6335_09910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_09920 PF02384 N-6 DNA Methylase J6335_09920 PF12161 HsdM N-terminal domain J6335_09960 PF00117 Glutamine amidotransferase class-I J6335_09960 PF00958 GMP synthase C terminal domain J6335_09960 PF02540 NAD synthase J6335_09965 PF00571 CBS domain J6335_09965 PF00478 IMP dehydrogenase / GMP reductase domain J6335_09970 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J6335_09970 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J6335_09980 PF00999 Sodium/hydrogen exchanger family J6335_09980 PF02254 TrkA-N domain J6335_09985 PF00483 Nucleotidyl transferase J6335_09990 PF02719 Polysaccharide biosynthesis protein J6335_09995 PF00953 Glycosyl transferase family 4 J6335_10000 PF18073 Rubredoxin metal binding domain J6335_10010 PF00216 Bacterial DNA-binding protein J6335_10015 PF00575 S1 RNA binding domain J6335_10020 PF02224 Cytidylate kinase J6335_10025 PF00444 Ribosomal protein L36 J6335_10035 PF04371 Porphyromonas-type peptidyl-arginine deiminase J6335_10040 PF00795 Carbon-nitrogen hydrolase J6335_10065 PF00528 Binding-protein-dependent transport system inner membrane component J6335_10070 PF00528 Binding-protein-dependent transport system inner membrane component J6335_10090 PF00356 Bacterial regulatory proteins, lacI family J6335_10100 PF03795 YCII-related domain J6335_10105 PF02616 Segregation and condensation protein ScpA J6335_10110 PF04079 Segregation and condensation complex subunit ScpB J6335_10115 PF00849 RNA pseudouridylate synthase J6335_10115 PF01479 S4 domain J6335_10130 PF00795 Carbon-nitrogen hydrolase J6335_10135 PF00155 Aminotransferase class I and II J6335_10140 PF00005 ABC transporter J6335_10145 PF03379 CcmB protein J6335_10150 PF01578 Cytochrome C assembly protein J6335_10160 PF03100 CcmE J6335_10165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J6335_10165 PF01578 Cytochrome C assembly protein J6335_10170 PF08534 Redoxin J6335_10175 PF03918 Cytochrome C biogenesis protein J6335_10185 PF00561 alpha/beta hydrolase fold J6335_10195 PF00664 ABC transporter transmembrane region J6335_10195 PF00005 ABC transporter J6335_10200 PF00664 ABC transporter transmembrane region J6335_10200 PF00005 ABC transporter J6335_10205 PF01654 Cytochrome bd terminal oxidase subunit I J6335_10210 PF02322 Cytochrome bd terminal oxidase subunit II J6335_10230 PF02129 X-Pro dipeptidyl-peptidase (S15 family) J6335_10230 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain J6335_10240 PF00171 Aldehyde dehydrogenase family J6335_10245 PF00696 Amino acid kinase family J6335_10245 PF01472 PUA domain J6335_10255 PF00206 Lyase J6335_10260 PF01118 Semialdehyde dehydrogenase, NAD binding domain J6335_10270 PF00696 Amino acid kinase family J6335_10270 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase J6335_10275 PF07687 Peptidase dimerisation domain J6335_10275 PF01546 Peptidase family M20/M25/M40 J6335_10285 PF00764 Arginosuccinate synthase J6335_10290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J6335_10290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J6335_10300 PF09190 DALR domain J6335_10300 PF01406 tRNA synthetases class I (C) catalytic domain J6335_10305 PF02657 Fe-S metabolism associated domain J6335_10315 PF01258 Prokaryotic dksA/traR C4-type zinc finger J6335_10320 PF01809 Putative membrane protein insertion efficiency factor J6335_10325 PF01979 Amidohydrolase family J6335_10330 PF08460 Bacterial SH3 domain J6335_10330 PF01551 Peptidase family M23 J6335_10345 PF06751 Ethanolamine ammonia lyase large subunit (EutB) J6335_10350 PF05985 Ethanolamine ammonia-lyase light chain (EutC) J6335_10360 PF00753 Metallo-beta-lactamase superfamily J6335_10380 PF01609 Transposase DDE domain J6335_10380 PF05598 Transposase domain (DUF772) J6335_10390 PF00295 Glycosyl hydrolases family 28 J6335_10405 PF13419 Haloacid dehalogenase-like hydrolase J6335_10415 PF01979 Amidohydrolase family J6335_10425 PF01132 Elongation factor P (EF-P) OB domain J6335_10425 PF08207 Elongation factor P (EF-P) KOW-like domain J6335_10425 PF09285 Elongation factor P, C-terminal J6335_10430 PF04055 Radical SAM superfamily J6335_10435 PF00563 EAL domain J6335_10435 PF00990 Diguanylate cyclase, GGDEF domain J6335_10435 PF03707 Bacterial signalling protein N terminal repeat J6335_10435 PF13188 PAS domain J6335_10445 PF00588 SpoU rRNA Methylase family J6335_10450 PF00459 Inositol monophosphatase family J6335_10455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J6335_10455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J6335_10460 PF00545 ribonuclease J6335_10470 PF16326 ABC transporter C-terminal domain J6335_10470 PF12848 ABC transporter J6335_10470 PF00005 ABC transporter J6335_10475 PF03880 DbpA RNA binding domain J6335_10475 PF00270 DEAD/DEAH box helicase J6335_10475 PF00271 Helicase conserved C-terminal domain J6335_10480 PF00156 Phosphoribosyl transferase domain J6335_10485 PF02696 Uncharacterized ACR, YdiU/UPF0061 family J6335_10490 PF00135 Carboxylesterase family J6335_10500 PF14497 Glutathione S-transferase, C-terminal domain J6335_10500 PF02798 Glutathione S-transferase, N-terminal domain J6335_10505 PF00313 'Cold-shock' DNA-binding domain J6335_10510 PF07152 YaeQ protein J6335_10520 PF00990 Diguanylate cyclase, GGDEF domain J6335_10520 PF00072 Response regulator receiver domain J6335_10520 PF00563 EAL domain J6335_10525 PF01435 Peptidase family M48 J6335_10530 PF00749 tRNA synthetases class I (E and Q), catalytic domain J6335_10535 PF00106 short chain dehydrogenase J6335_10540 PF05233 PHB accumulation regulatory domain J6335_10540 PF07879 PHB/PHA accumulation regulator DNA-binding domain J6335_10560 PF01119 DNA mismatch repair protein, C-terminal domain J6335_10560 PF08676 MutL C terminal dimerisation domain J6335_10565 PF11741 AMIN domain J6335_10565 PF01520 N-acetylmuramoyl-L-alanine amidase J6335_10570 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J6335_10575 PF01256 Carbohydrate kinase J6335_10575 PF03853 YjeF-related protein N-terminus J6335_10580 PF08331 Domain of unknown function (DUF1730) J6335_10585 PF02601 Exonuclease VII, large subunit J6335_10585 PF13742 OB-fold nucleic acid binding domain J6335_10595 PF03781 Sulfatase-modifying factor enzyme 1 J6335_10605 PF01612 3'-5' exonuclease J6335_10605 PF00570 HRDC domain J6335_10610 PF04679 ATP dependent DNA ligase C terminal region J6335_10610 PF01068 ATP dependent DNA ligase domain J6335_10610 PF13298 DNA polymerase Ligase (LigD) J6335_10640 PF01584 CheW-like domain J6335_10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_10645 PF02743 Cache domain J6335_10645 PF00672 HAMP domain J6335_10650 PF02245 Methylpurine-DNA glycosylase (MPG) J6335_10655 PF00271 Helicase conserved C-terminal domain J6335_10655 PF08494 DEAD/H associated J6335_10655 PF00270 DEAD/DEAH box helicase J6335_10675 PF04386 Stringent starvation protein B J6335_10680 PF00043 Glutathione S-transferase, C-terminal domain J6335_10680 PF02798 Glutathione S-transferase, N-terminal domain J6335_10685 PF02167 Cytochrome C1 family J6335_10690 PF00032 Cytochrome b(C-terminal)/b6/petD J6335_10690 PF00033 Cytochrome b/b6/petB J6335_10695 PF00355 Rieske [2Fe-2S] domain J6335_10695 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal J6335_10700 PF01464 Transglycosylase SLT domain J6335_10715 PF01938 TRAM domain J6335_10715 PF00919 Uncharacterized protein family UPF0004 J6335_10715 PF04055 Radical SAM superfamily J6335_10720 PF02562 PhoH-like protein J6335_10730 PF02130 Uncharacterized protein family UPF0054 J6335_10740 PF00571 CBS domain J6335_10740 PF03471 Transporter associated domain J6335_10755 PF00171 Aldehyde dehydrogenase family J6335_10760 PF00528 Binding-protein-dependent transport system inner membrane component J6335_10765 PF00528 Binding-protein-dependent transport system inner membrane component J6335_10770 PF00005 ABC transporter J6335_10770 PF08402 TOBE domain J6335_10775 PF02321 Outer membrane efflux protein J6335_10780 PF07690 Major Facilitator Superfamily J6335_10785 PF13533 Biotin-lipoyl like J6335_10790 PF13416 Bacterial extracellular solute-binding protein J6335_10795 PF00202 Aminotransferase class-III J6335_10805 PF00120 Glutamine synthetase, catalytic domain J6335_10810 PF07722 Peptidase C26 J6335_10815 PF00120 Glutamine synthetase, catalytic domain J6335_10820 PF01266 FAD dependent oxidoreductase J6335_10825 PF00990 Diguanylate cyclase, GGDEF domain J6335_10825 PF00072 Response regulator receiver domain J6335_10830 PF01814 Hemerythrin HHE cation binding domain J6335_10835 PF07690 Major Facilitator Superfamily J6335_10835 PF00083 Sugar (and other) transporter J6335_10845 PF00384 Molybdopterin oxidoreductase J6335_10850 PF02634 FdhD/NarQ family J6335_10855 PF07690 Major Facilitator Superfamily J6335_10860 PF00202 Aminotransferase class-III J6335_10870 PF04286 Protein of unknown function (DUF445) J6335_10875 PF00072 Response regulator receiver domain J6335_10875 PF01627 Hpt domain J6335_10875 PF00512 His Kinase A (phospho-acceptor) domain J6335_10875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) J6335_10875 PF00672 HAMP domain J6335_10875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_10880 PF00072 Response regulator receiver domain J6335_10885 PF07690 Major Facilitator Superfamily J6335_10920 PF05088 Bacterial NAD-glutamate dehydrogenase J6335_10930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_10930 PF00529 HlyD membrane-fusion protein of T1SS J6335_10935 PF00873 AcrB/AcrD/AcrF family J6335_10940 PF00356 Bacterial regulatory proteins, lacI family J6335_10945 PF05524 PEP-utilising enzyme, N-terminal J6335_10945 PF00391 PEP-utilising enzyme, mobile domain J6335_10945 PF02896 PEP-utilising enzyme, TIM barrel domain J6335_10945 PF00381 PTS HPr component phosphorylation site J6335_10945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J6335_10950 PF00294 pfkB family carbohydrate kinase J6335_10955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J6335_10970 PF00872 Transposase, Mutator family J6335_10975 PF07549 SecD/SecF GG Motif J6335_10975 PF02355 Protein export membrane protein J6335_10980 PF07549 SecD/SecF GG Motif J6335_10980 PF13721 SecD export protein N-terminal TM region J6335_10980 PF02355 Protein export membrane protein J6335_10985 PF02699 Preprotein translocase subunit J6335_10990 PF01702 Queuine tRNA-ribosyltransferase J6335_10995 PF02547 Queuosine biosynthesis protein J6335_11035 PF02927 Cellulase N-terminal ig-like domain J6335_11035 PF00759 Glycosyl hydrolase family 9 J6335_11045 PF00037 4Fe-4S binding domain J6335_11055 PF01467 Cytidylyltransferase-like J6335_11065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_11065 PF00183 Hsp90 protein J6335_11145 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J6335_11150 PF05101 Type IV secretory pathway, VirB3-like protein J6335_11160 PF01464 Transglycosylase SLT domain J6335_11165 PF00437 Type II/IV secretion system protein J6335_11170 PF03743 Bacterial conjugation TrbI-like protein J6335_11190 PF02534 Type IV secretory system Conjugative DNA transfer J6335_11205 PF00271 Helicase conserved C-terminal domain J6335_11205 PF04851 Type III restriction enzyme, res subunit J6335_11205 PF02151 UvrB/uvrC motif J6335_11205 PF12344 Ultra-violet resistance protein B J6335_11205 PF17757 UvrB interaction domain J6335_11375 PF00182 Chitinase class I J6335_11430 PF01555 DNA methylase J6335_11465 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor J6335_11465 PF07963 Prokaryotic N-terminal methylation motif J6335_11470 PF05567 Neisseria PilC beta-propeller domain J6335_11495 PF06580 Histidine kinase J6335_11495 PF07694 5TMR of 5TMR-LYT J6335_11500 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J6335_11500 PF11892 Domain of unknown function (DUF3412) J6335_11500 PF03641 Possible lysine decarboxylase J6335_11505 PF00593 TonB dependent receptor J6335_11510 PF01914 MarC family integral membrane protein J6335_11520 PF00462 Glutaredoxin J6335_11525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J6335_11525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J6335_11530 PF02222 ATP-grasp domain J6335_11530 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J6335_11535 PF00731 AIR carboxylase J6335_11545 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain J6335_11545 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain J6335_11555 PF00013 KH domain J6335_11555 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J6335_11555 PF01138 3' exoribonuclease family, domain 1 J6335_11555 PF03725 3' exoribonuclease family, domain 2 J6335_11555 PF00575 S1 RNA binding domain J6335_11560 PF00312 Ribosomal protein S15 J6335_11565 PF16198 tRNA pseudouridylate synthase B C-terminal domain J6335_11565 PF09157 Pseudouridine synthase II TruB, C-terminal J6335_11565 PF01509 TruB family pseudouridylate synthase (N terminal domain) J6335_11570 PF02033 Ribosome-binding factor A J6335_11575 PF00009 Elongation factor Tu GTP binding domain J6335_11575 PF11987 Translation-initiation factor 2 J6335_11575 PF08364 Bacterial translation initiation factor IF-2 associated region J6335_11575 PF04760 Translation initiation factor IF-2, N-terminal region J6335_11580 PF13184 NusA-like KH domain J6335_11580 PF08529 NusA N-terminal domain J6335_11580 PF00575 S1 RNA binding domain J6335_11585 PF17384 RimP C-terminal SH3 domain J6335_11585 PF02576 RimP N-terminal domain J6335_11595 PF00361 Proton-conducting membrane transporter J6335_11600 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus J6335_11600 PF00361 Proton-conducting membrane transporter J6335_11605 PF00361 Proton-conducting membrane transporter J6335_11605 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus J6335_11610 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L J6335_11615 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 J6335_11620 PF12838 4Fe-4S dicluster domain J6335_11625 PF00146 NADH dehydrogenase J6335_11630 PF00384 Molybdopterin oxidoreductase J6335_11630 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region J6335_11630 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal J6335_11635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J6335_11635 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region J6335_11635 PF10531 SLBB domain J6335_11645 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit J6335_11650 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit J6335_11655 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J6335_11660 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 J6335_11675 PF00121 Triosephosphate isomerase J6335_11680 PF00106 short chain dehydrogenase J6335_11695 PF00990 Diguanylate cyclase, GGDEF domain J6335_11695 PF00563 EAL domain J6335_11695 PF03707 Bacterial signalling protein N terminal repeat J6335_11710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J6335_11710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J6335_11710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J6335_11710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J6335_11715 PF01039 Carboxyl transferase domain J6335_11715 PF17848 Acetyl-coA carboxylase zinc finger domain J6335_11720 PF00290 Tryptophan synthase alpha chain J6335_11730 PF00291 Pyridoxal-phosphate dependent enzyme J6335_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_11735 PF03466 LysR substrate binding domain J6335_11740 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J6335_11745 PF01416 tRNA pseudouridine synthase J6335_11760 PF01118 Semialdehyde dehydrogenase, NAD binding domain J6335_11760 PF02774 Semialdehyde dehydrogenase, dimerisation domain J6335_11765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J6335_11765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J6335_11770 PF01264 Chorismate synthase J6335_11775 PF05175 Methyltransferase small domain J6335_11780 PF02630 SCO1/SenC J6335_11785 PF02666 Phosphatidylserine decarboxylase J6335_11795 PF05872 Bacterial protein of unknown function (DUF853) J6335_11820 PF01272 Transcription elongation factor, GreA/GreB, C-term J6335_11820 PF03449 Transcription elongation factor, N-terminal J6335_11825 PF04055 Radical SAM superfamily J6335_11825 PF18693 TRAM domain J6335_11825 PF00919 Uncharacterized protein family UPF0004 J6335_11830 PF01738 Dienelactone hydrolase family J6335_11850 PF00692 dUTPase J6335_11855 PF10609 NUBPL iron-transfer P-loop NTPase J6335_11860 PF00593 TonB dependent receptor J6335_11860 PF07715 TonB-dependent Receptor Plug Domain J6335_11885 PF01431 Peptidase family M13 J6335_11885 PF05649 Peptidase family M13 J6335_11910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J6335_11910 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_11915 PF01266 FAD dependent oxidoreductase J6335_11920 PF04235 Protein of unknown function (DUF418) J6335_11925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J6335_11930 PF00877 NlpC/P60 family J6335_11935 PF00877 NlpC/P60 family J6335_11950 PF00375 Sodium:dicarboxylate symporter family J6335_11955 PF00245 Alkaline phosphatase J6335_11960 PF01171 PP-loop family J6335_11960 PF09179 TilS substrate binding domain J6335_11960 PF11734 TilS substrate C-terminal domain J6335_11965 PF02609 Exonuclease VII small subunit J6335_11970 PF00348 Polyprenyl synthetase J6335_11975 PF14521 Lysine-specific metallo-endopeptidase J6335_11985 PF01523 Putative modulator of DNA gyrase J6335_11990 PF04751 Protein of unknown function (DUF615) J6335_11995 PF01523 Putative modulator of DNA gyrase J6335_12005 PF13502 AsmA-like C-terminal region J6335_12005 PF13116 Protein of unknown function J6335_12010 PF10150 Ribonuclease E/G family J6335_12010 PF00575 S1 RNA binding domain J6335_12015 PF02545 Maf-like protein J6335_12020 PF04402 Protein of unknown function (DUF541) J6335_12035 PF02590 Predicted SPOUT methyltransferase J6335_12050 PF01467 Cytidylyltransferase-like J6335_12065 PF00133 tRNA synthetases class I (I, L, M and V) J6335_12065 PF13603 Leucyl-tRNA synthetase, Domain 2 J6335_12065 PF08264 Anticodon-binding domain of tRNA J6335_12075 PF00085 Thioredoxin J6335_12095 PF07043 Protein of unknown function (DUF1328) J6335_12100 PF04070 Domain of unknown function (DUF378) J6335_12105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J6335_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_12115 PF03466 LysR substrate binding domain J6335_12120 PF01022 Bacterial regulatory protein, arsR family J6335_12150 PF00664 ABC transporter transmembrane region J6335_12150 PF00005 ABC transporter J6335_12160 PF00873 AcrB/AcrD/AcrF family J6335_12175 PF02321 Outer membrane efflux protein J6335_12180 PF00072 Response regulator receiver domain J6335_12180 PF00486 Transcriptional regulatory protein, C terminal J6335_12185 PF00672 HAMP domain J6335_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_12185 PF00512 His Kinase A (phospho-acceptor) domain J6335_12190 PF00999 Sodium/hydrogen exchanger family J6335_12195 PF00144 Beta-lactamase J6335_12200 PF03737 Aldolase/RraA J6335_12215 PF00990 Diguanylate cyclase, GGDEF domain J6335_12220 PF01479 S4 domain J6335_12220 PF00849 RNA pseudouridylate synthase J6335_12225 PF00563 EAL domain J6335_12225 PF00990 Diguanylate cyclase, GGDEF domain J6335_12225 PF08448 PAS fold J6335_12230 PF03880 DbpA RNA binding domain J6335_12230 PF00270 DEAD/DEAH box helicase J6335_12230 PF00271 Helicase conserved C-terminal domain J6335_12235 PF08281 Sigma-70, region 4 J6335_12235 PF04542 Sigma-70 region 2 J6335_12280 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J6335_12280 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J6335_12290 PF00654 Voltage gated chloride channel J6335_12295 PF00107 Zinc-binding dehydrogenase J6335_12295 PF08240 Alcohol dehydrogenase GroES-like domain J6335_12310 PF07715 TonB-dependent Receptor Plug Domain J6335_12310 PF00593 TonB dependent receptor J6335_12330 PF01483 Proprotein convertase P-domain J6335_12330 PF00082 Subtilase family J6335_12340 PF01483 Proprotein convertase P-domain J6335_12340 PF00082 Subtilase family J6335_12350 PF00248 Aldo/keto reductase family J6335_12355 PF07690 Major Facilitator Superfamily J6335_12360 PF03466 LysR substrate binding domain J6335_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_12370 PF06719 AraC-type transcriptional regulator N-terminus J6335_12370 PF12833 Helix-turn-helix domain J6335_12380 PF16859 Tetracyclin repressor-like, C-terminal domain J6335_12380 PF00440 Bacterial regulatory proteins, tetR family J6335_12385 PF02321 Outer membrane efflux protein J6335_12390 PF00873 AcrB/AcrD/AcrF family J6335_12395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_12395 PF00529 HlyD membrane-fusion protein of T1SS J6335_12405 PF01475 Ferric uptake regulator family J6335_12410 PF00749 tRNA synthetases class I (E and Q), catalytic domain J6335_12435 PF06123 Inner membrane protein CreD J6335_12455 PF00072 Response regulator receiver domain J6335_12455 PF00486 Transcriptional regulatory protein, C terminal J6335_12460 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J6335_12475 PF00270 DEAD/DEAH box helicase J6335_12475 PF00271 Helicase conserved C-terminal domain J6335_12475 PF03461 TRCF domain J6335_12475 PF17757 UvrB interaction domain J6335_12475 PF02559 CarD-like/TRCF domain J6335_12485 PF01584 CheW-like domain J6335_12485 PF09078 CheY binding J6335_12485 PF02895 Signal transducing histidine kinase, homodimeric domain J6335_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_12485 PF01627 Hpt domain J6335_12490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_12490 PF02203 Tar ligand binding domain homologue J6335_12490 PF00672 HAMP domain J6335_12495 PF01584 CheW-like domain J6335_12500 PF13426 PAS domain J6335_12500 PF00990 Diguanylate cyclase, GGDEF domain J6335_12500 PF00563 EAL domain J6335_12505 PF03705 CheR methyltransferase, all-alpha domain J6335_12505 PF01739 CheR methyltransferase, SAM binding domain J6335_12510 PF00072 Response regulator receiver domain J6335_12510 PF01339 CheB methylesterase J6335_12520 PF01431 Peptidase family M13 J6335_12520 PF05649 Peptidase family M13 J6335_12530 PF00300 Histidine phosphatase superfamily (branch 1) J6335_12535 PF04493 Endonuclease V J6335_12545 PF05726 Pirin C-terminal cupin domain J6335_12545 PF02678 Pirin J6335_12560 PF02678 Pirin J6335_12560 PF05726 Pirin C-terminal cupin domain J6335_12565 PF02554 Carbon starvation protein CstA J6335_12565 PF13722 5TM C-terminal transporter carbon starvation CstA J6335_12570 PF04328 Selenoprotein, putative J6335_12580 PF12796 Ankyrin repeats (3 copies) J6335_12605 PF13478 XdhC Rossmann domain J6335_12605 PF02625 XdhC and CoxI family J6335_12610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain J6335_12610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase J6335_12615 PF03450 CO dehydrogenase flavoprotein C-terminal domain J6335_12615 PF00941 FAD binding domain in molybdopterin dehydrogenase J6335_12620 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_12620 PF01799 [2Fe-2S] binding domain J6335_12620 PF10518 TAT (twin-arginine translocation) pathway signal sequence J6335_12625 PF00550 Phosphopantetheine attachment site J6335_12625 PF08659 KR domain J6335_12625 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_12625 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_12625 PF16197 Ketoacyl-synthetase C-terminal extension J6335_12625 PF14765 Polyketide synthase dehydratase J6335_12625 PF08240 Alcohol dehydrogenase GroES-like domain J6335_12625 PF00698 Acyl transferase domain J6335_12625 PF00107 Zinc-binding dehydrogenase J6335_12630 PF00563 EAL domain J6335_12630 PF01590 GAF domain J6335_12630 PF00990 Diguanylate cyclase, GGDEF domain J6335_12630 PF00360 Phytochrome region J6335_12635 PF00436 Single-strand binding protein family J6335_12640 PF00348 Polyprenyl synthetase J6335_12650 PF08245 Mur ligase middle domain J6335_12650 PF02875 Mur ligase family, glutamate ligase domain J6335_12665 PF00696 Amino acid kinase family J6335_12665 PF01842 ACT domain J6335_12670 PF02567 Phenazine biosynthesis-like protein J6335_12675 PF02567 Phenazine biosynthesis-like protein J6335_12685 PF02566 OsmC-like protein J6335_12690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J6335_12690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J6335_12695 PF03652 Holliday junction resolvase J6335_12700 PF02622 Uncharacterized ACR, COG1678 J6335_12705 PF13687 Domain of unknown function (DUF4153) J6335_12710 PF13673 Acetyltransferase (GNAT) domain J6335_12710 PF13302 Acetyltransferase (GNAT) domain J6335_12710 PF03352 Methyladenine glycosylase J6335_12710 PF00117 Glutamine amidotransferase class-I J6335_12710 PF00958 GMP synthase C terminal domain J6335_12725 PF00437 Type II/IV secretion system protein J6335_12730 PF00437 Type II/IV secretion system protein J6335_12735 PF01168 Alanine racemase, N-terminal domain J6335_12740 PF14748 Pyrroline-5-carboxylate reductase dimerisation J6335_12740 PF03807 NADP oxidoreductase coenzyme F420-dependent J6335_12750 PF01551 Peptidase family M23 J6335_12770 PF01965 DJ-1/PfpI family J6335_12780 PF02082 Transcriptional regulator J6335_12785 PF01458 Uncharacterized protein family (UPF0051) J6335_12790 PF00005 ABC transporter J6335_12795 PF01458 Uncharacterized protein family (UPF0051) J6335_12800 PF00266 Aminotransferase class-V J6335_12805 PF00583 Acetyltransferase (GNAT) family J6335_12810 PF00355 Rieske [2Fe-2S] domain J6335_12815 PF07715 TonB-dependent Receptor Plug Domain J6335_12815 PF00593 TonB dependent receptor J6335_12820 PF18331 PKHD-type hydroxylase C-terminal domain J6335_12820 PF13640 2OG-Fe(II) oxygenase superfamily J6335_12845 PF00872 Transposase, Mutator family J6335_12850 PF02424 ApbE family J6335_12855 PF00175 Oxidoreductase NAD-binding domain J6335_12855 PF00258 Flavodoxin J6335_12855 PF00667 FAD binding domain J6335_12860 PF05962 HutD J6335_12880 PF01636 Phosphotransferase enzyme family J6335_12885 PF00483 Nucleotidyl transferase J6335_12890 PF00308 Bacterial dnaA protein J6335_12895 PF01594 AI-2E family transporter J6335_12905 PF00586 AIR synthase related protein, N-terminal domain J6335_12905 PF02769 AIR synthase related protein, C-terminal domain J6335_12920 PF00551 Formyl transferase J6335_12940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J6335_12945 PF01722 BolA-like protein J6335_12950 PF00571 CBS domain J6335_12950 PF01380 SIS domain J6335_12965 PF03968 OstA-like protein J6335_12970 PF00005 ABC transporter J6335_12975 PF00309 Sigma-54 factor, Activator interacting domain (AID) J6335_12975 PF04552 Sigma-54, DNA binding domain J6335_12975 PF04963 Sigma-54 factor, core binding domain J6335_12980 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J6335_12985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J6335_12990 PF07475 HPr Serine kinase C-terminal domain J6335_12990 PF02603 HPr Serine kinase N terminus J6335_12995 PF03668 P-loop ATPase protein family J6335_13005 PF00381 PTS HPr component phosphorylation site J6335_13020 PF03448 MgtE intracellular N domain J6335_13020 PF01769 Divalent cation transporter J6335_13020 PF00571 CBS domain J6335_13025 PF00756 Putative esterase J6335_13030 PF02322 Cytochrome bd terminal oxidase subunit II J6335_13060 PF03743 Bacterial conjugation TrbI-like protein J6335_13080 PF01131 DNA topoisomerase J6335_13080 PF01751 Toprim domain J6335_13085 PF03377 TAL effector repeat J6335_13095 PF13406 Transglycosylase SLT domain J6335_13170 PF00324 Amino acid permease J6335_13175 PF00544 Pectate lyase J6335_13190 PF00561 alpha/beta hydrolase fold J6335_13195 PF00196 Bacterial regulatory proteins, luxR family J6335_13200 PF00324 Amino acid permease J6335_13220 PF12706 Beta-lactamase superfamily domain J6335_13225 PF04820 Tryptophan halogenase J6335_13265 PF00376 MerR family regulatory protein J6335_13265 PF09278 MerR, DNA binding J6335_13270 PF07690 Major Facilitator Superfamily J6335_13275 PF03738 Glutathionylspermidine synthase preATP-grasp J6335_13300 PF04012 PspA/IM30 family J6335_13310 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J6335_13310 PF01243 Pyridoxamine 5'-phosphate oxidase J6335_13315 PF01202 Shikimate kinase J6335_13320 PF01761 3-dehydroquinate synthase J6335_13330 PF01208 Uroporphyrinogen decarboxylase (URO-D) J6335_13335 PF07690 Major Facilitator Superfamily J6335_13340 PF17149 Periplasmic sensor domain found in signal transduction proteins J6335_13340 PF00072 Response regulator receiver domain J6335_13340 PF01627 Hpt domain J6335_13340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13340 PF00672 HAMP domain J6335_13340 PF00512 His Kinase A (phospho-acceptor) domain J6335_13345 PF01627 Hpt domain J6335_13345 PF17149 Periplasmic sensor domain found in signal transduction proteins J6335_13345 PF00672 HAMP domain J6335_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13345 PF00512 His Kinase A (phospho-acceptor) domain J6335_13345 PF00072 Response regulator receiver domain J6335_13350 PF00672 HAMP domain J6335_13350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13350 PF00512 His Kinase A (phospho-acceptor) domain J6335_13350 PF01627 Hpt domain J6335_13350 PF00072 Response regulator receiver domain J6335_13350 PF17149 Periplasmic sensor domain found in signal transduction proteins J6335_13360 PF01627 Hpt domain J6335_13360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13360 PF00512 His Kinase A (phospho-acceptor) domain J6335_13360 PF00072 Response regulator receiver domain J6335_13365 PF04264 YceI-like domain J6335_13385 PF03313 Serine dehydratase alpha chain J6335_13385 PF03315 Serine dehydratase beta chain J6335_13390 PF00704 Glycosyl hydrolases family 18 J6335_13390 PF00553 Cellulose binding domain J6335_13390 PF00041 Fibronectin type III domain J6335_13395 PF00696 Amino acid kinase family J6335_13395 PF03447 Homoserine dehydrogenase, NAD binding domain J6335_13395 PF00742 Homoserine dehydrogenase J6335_13400 PF01053 Cys/Met metabolism PLP-dependent enzyme J6335_13405 PF00561 alpha/beta hydrolase fold J6335_13410 PF01551 Peptidase family M23 J6335_13410 PF08525 Opacity-associated protein A N-terminal motif J6335_13410 PF01476 LysM domain J6335_13415 PF16658 Class II release factor RF3, C-terminal domain J6335_13415 PF00009 Elongation factor Tu GTP binding domain J6335_13420 PF03006 Haemolysin-III related J6335_13425 PF05170 AsmA family J6335_13430 PF00478 IMP dehydrogenase / GMP reductase domain J6335_13430 PF00571 CBS domain J6335_13435 PF00535 Glycosyl transferase family 2 J6335_13440 PF00912 Transglycosylase J6335_13445 PF01430 Hsp33 protein J6335_13455 PF07715 TonB-dependent Receptor Plug Domain J6335_13455 PF00593 TonB dependent receptor J6335_13460 PF00440 Bacterial regulatory proteins, tetR family J6335_13470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_13470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_13470 PF09317 Domain of unknown function (DUF1974) J6335_13495 PF00872 Transposase, Mutator family J6335_13520 PF01597 Glycine cleavage H-protein J6335_13525 PF01571 Aminomethyltransferase folate-binding domain J6335_13525 PF08669 Glycine cleavage T-protein C-terminal barrel domain J6335_13535 PF01145 SPFH domain / Band 7 family J6335_13535 PF16200 C-terminal region of band_7 J6335_13540 PF02694 Uncharacterised BCR, YnfA/UPF0060 family J6335_13545 PF03819 MazG nucleotide pyrophosphohydrolase domain J6335_13550 PF00459 Inositol monophosphatase family J6335_13555 PF00293 NUDIX domain J6335_13560 PF00202 Aminotransferase class-III J6335_13565 PF04452 RNA methyltransferase J6335_13570 PF02685 Glucokinase J6335_13610 PF01618 MotA/TolQ/ExbB proton channel family J6335_13615 PF00691 OmpA family J6335_13615 PF13677 Membrane MotB of proton-channel complex MotA/MotB J6335_13620 PF13614 AAA domain J6335_13625 PF01584 CheW-like domain J6335_13635 PF00072 Response regulator receiver domain J6335_13640 PF01584 CheW-like domain J6335_13640 PF09078 CheY binding J6335_13640 PF02895 Signal transducing histidine kinase, homodimeric domain J6335_13640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13640 PF01627 Hpt domain J6335_13645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13645 PF02203 Tar ligand binding domain homologue J6335_13645 PF00672 HAMP domain J6335_13650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13650 PF02203 Tar ligand binding domain homologue J6335_13650 PF00672 HAMP domain J6335_13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13660 PF08269 Cache domain J6335_13660 PF08269 Cache domain J6335_13665 PF00672 HAMP domain J6335_13665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13665 PF02203 Tar ligand binding domain homologue J6335_13675 PF00672 HAMP domain J6335_13675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13675 PF02203 Tar ligand binding domain homologue J6335_13680 PF00672 HAMP domain J6335_13680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13685 PF00672 HAMP domain J6335_13685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13685 PF02203 Tar ligand binding domain homologue J6335_13690 PF00672 HAMP domain J6335_13690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13690 PF02203 Tar ligand binding domain homologue J6335_13705 PF02203 Tar ligand binding domain homologue J6335_13705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13705 PF00672 HAMP domain J6335_13710 PF02203 Tar ligand binding domain homologue J6335_13710 PF00672 HAMP domain J6335_13710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13715 PF00672 HAMP domain J6335_13715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13715 PF02203 Tar ligand binding domain homologue J6335_13720 PF00672 HAMP domain J6335_13720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13720 PF02203 Tar ligand binding domain homologue J6335_13725 PF00672 HAMP domain J6335_13725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13725 PF02203 Tar ligand binding domain homologue J6335_13730 PF07238 PilZ domain J6335_13730 PF07317 Flagellar regulator YcgR J6335_13735 PF01584 CheW-like domain J6335_13745 PF02203 Tar ligand binding domain homologue J6335_13745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_13745 PF00672 HAMP domain J6335_13750 PF03705 CheR methyltransferase, all-alpha domain J6335_13750 PF01739 CheR methyltransferase, SAM binding domain J6335_13755 PF03975 CheD chemotactic sensory transduction J6335_13760 PF01339 CheB methylesterase J6335_13760 PF00072 Response regulator receiver domain J6335_13765 PF00563 EAL domain J6335_13765 PF00990 Diguanylate cyclase, GGDEF domain J6335_13765 PF03707 Bacterial signalling protein N terminal repeat J6335_13770 PF00561 alpha/beta hydrolase fold J6335_13775 PF00330 Aconitase family (aconitate hydratase) J6335_13775 PF06434 Aconitate hydratase 2 N-terminus J6335_13775 PF11791 Aconitate B N-terminal domain J6335_13790 PF00694 Aconitase C-terminal domain J6335_13790 PF00330 Aconitase family (aconitate hydratase) J6335_13805 PF13193 AMP-binding enzyme C-terminal domain J6335_13805 PF00501 AMP-binding enzyme J6335_13810 PF00378 Enoyl-CoA hydratase/isomerase J6335_13815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13815 PF00072 Response regulator receiver domain J6335_13815 PF01627 Hpt domain J6335_13815 PF00512 His Kinase A (phospho-acceptor) domain J6335_13820 PF00512 His Kinase A (phospho-acceptor) domain J6335_13820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_13820 PF00072 Response regulator receiver domain J6335_13820 PF01627 Hpt domain J6335_13825 PF00072 Response regulator receiver domain J6335_13830 PF01336 OB-fold nucleic acid binding domain J6335_13830 PF00152 tRNA synthetases class II (D, K and N) J6335_13850 PF17768 RecJ OB domain J6335_13850 PF01368 DHH family J6335_13850 PF02272 DHHA1 domain J6335_13860 PF03449 Transcription elongation factor, N-terminal J6335_13860 PF01272 Transcription elongation factor, GreA/GreB, C-term J6335_13865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J6335_13865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain J6335_13865 PF02142 MGS-like domain J6335_13875 PF00117 Glutamine amidotransferase class-I J6335_13875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain J6335_13880 PF05173 Dihydrodipicolinate reductase, C-terminus J6335_13880 PF01113 Dihydrodipicolinate reductase, N-terminus J6335_13885 PF03475 3-alpha domain J6335_13885 PF03473 MOSC domain J6335_13890 PF00155 Aminotransferase class I and II J6335_13905 PF07664 Ferrous iron transport protein B C terminus J6335_13905 PF02421 Ferrous iron transport protein B J6335_13905 PF07670 Nucleoside recognition J6335_13915 PF00378 Enoyl-CoA hydratase/isomerase J6335_13925 PF00682 HMGL-like J6335_13930 PF00106 short chain dehydrogenase J6335_13935 PF01132 Elongation factor P (EF-P) OB domain J6335_13935 PF09285 Elongation factor P, C-terminal J6335_13935 PF08207 Elongation factor P (EF-P) KOW-like domain J6335_13955 PF02913 FAD linked oxidases, C-terminal domain J6335_13955 PF01565 FAD binding domain J6335_13960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J6335_13960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J6335_13970 PF13520 Amino acid permease J6335_13975 PF13520 Amino acid permease J6335_13980 PF00596 Class II Aldolase and Adducin N-terminal domain J6335_13985 PF03079 ARD/ARD' family J6335_14005 PF01502 Phosphoribosyl-AMP cyclohydrolase J6335_14005 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J6335_14010 PF00977 Histidine biosynthesis protein J6335_14015 PF00977 Histidine biosynthesis protein J6335_14020 PF00117 Glutamine amidotransferase class-I J6335_14025 PF00475 Imidazoleglycerol-phosphate dehydratase J6335_14030 PF00155 Aminotransferase class I and II J6335_14035 PF00815 Histidinol dehydrogenase J6335_14040 PF01634 ATP phosphoribosyltransferase J6335_14040 PF08029 HisG, C-terminal domain J6335_14050 PF13393 Histidyl-tRNA synthetase J6335_14050 PF03129 Anticodon binding domain J6335_14055 PF00027 Cyclic nucleotide-binding domain J6335_14055 PF13545 Crp-like helix-turn-helix domain J6335_14065 PF00291 Pyridoxal-phosphate dependent enzyme J6335_14065 PF14821 Threonine synthase N terminus J6335_14075 PF07519 Tannase and feruloyl esterase J6335_14085 PF08544 GHMP kinases C terminal J6335_14085 PF00288 GHMP kinases N terminal domain J6335_14090 PF00742 Homoserine dehydrogenase J6335_14090 PF13840 ACT domain J6335_14090 PF01842 ACT domain J6335_14090 PF03447 Homoserine dehydrogenase, NAD binding domain J6335_14090 PF00696 Amino acid kinase family J6335_14095 PF00872 Transposase, Mutator family J6335_14100 PF03073 TspO/MBR family J6335_14120 PF00872 Transposase, Mutator family J6335_14130 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J6335_14130 PF08479 POTRA domain, ShlB-type J6335_14130 PF17287 POTRA domain J6335_14155 PF00872 Transposase, Mutator family J6335_14190 PF00593 TonB dependent receptor J6335_14190 PF07715 TonB-dependent Receptor Plug Domain J6335_14200 PF07532 Bacterial Ig-like domain (group 4) J6335_14210 PF00593 TonB dependent receptor J6335_14210 PF07715 TonB-dependent Receptor Plug Domain J6335_14220 PF09286 Pro-kumamolisin, activation domain J6335_14220 PF00082 Subtilase family J6335_14250 PF13520 Amino acid permease J6335_14265 PF01321 Creatinase/Prolidase N-terminal domain J6335_14265 PF00557 Metallopeptidase family M24 J6335_14270 PF00171 Aldehyde dehydrogenase family J6335_14275 PF00701 Dihydrodipicolinate synthetase family J6335_14280 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_14280 PF04324 BFD-like [2Fe-2S] binding domain J6335_14290 PF01266 FAD dependent oxidoreductase J6335_14295 PF05544 Proline racemase J6335_14305 PF00448 SRP54-type protein, GTPase domain J6335_14305 PF02881 SRP54-type protein, helical bundle domain J6335_14310 PF10576 Iron-sulfur binding domain of endonuclease III J6335_14310 PF14815 NUDIX domain J6335_14310 PF00633 Helix-hairpin-helix motif J6335_14310 PF00730 HhH-GPD superfamily base excision DNA repair protein J6335_14315 PF04362 Bacterial Fe(2+) trafficking J6335_14330 PF00072 Response regulator receiver domain J6335_14330 PF13426 PAS domain J6335_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_14360 PF08212 Lipocalin-like domain J6335_14370 PF12806 Acetyl-CoA dehydrogenase C-terminal like J6335_14370 PF02770 Acyl-CoA dehydrogenase, middle domain J6335_14370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain J6335_14370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain J6335_14380 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J6335_14380 PF02779 Transketolase, pyrimidine binding domain J6335_14380 PF02780 Transketolase, C-terminal domain J6335_14400 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family J6335_14410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J6335_14410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J6335_14425 PF03808 Glycosyl transferase WecB/TagA/CpsF family J6335_14440 PF14667 Polysaccharide biosynthesis C-terminal domain J6335_14450 PF00534 Glycosyl transferases group 1 J6335_14450 PF13439 Glycosyltransferase Family 4 J6335_14470 PF02397 Bacterial sugar transferase J6335_14490 PF13411 MerR HTH family regulatory protein J6335_14495 PF00216 Bacterial DNA-binding protein J6335_14500 PF03483 B3/4 domain J6335_14500 PF03484 tRNA synthetase B5 domain J6335_14500 PF03147 Ferredoxin-fold anticodon binding domain J6335_14500 PF01588 Putative tRNA binding domain J6335_14500 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J6335_14505 PF01409 tRNA synthetases class II core domain (F) J6335_14505 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J6335_14510 PF00453 Ribosomal protein L20 J6335_14515 PF01632 Ribosomal protein L35 J6335_14520 PF00707 Translation initiation factor IF-3, C-terminal domain J6335_14520 PF05198 Translation initiation factor IF-3, N-terminal domain J6335_14525 PF03129 Anticodon binding domain J6335_14525 PF02824 TGS domain J6335_14525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J6335_14525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J6335_14530 PF00356 Bacterial regulatory proteins, lacI family J6335_14535 PF00128 Alpha amylase, catalytic domain J6335_14535 PF00686 Starch binding domain J6335_14550 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J6335_14550 PF14508 Glycosyl-hydrolase 97 N-terminal J6335_14550 PF10566 Glycoside hydrolase 97 J6335_14570 PF00128 Alpha amylase, catalytic domain J6335_14575 PF00872 Transposase, Mutator family J6335_14585 PF00171 Aldehyde dehydrogenase family J6335_14600 PF01180 Dihydroorotate dehydrogenase J6335_14605 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J6335_14605 PF01565 FAD binding domain J6335_14610 PF00892 EamA-like transporter family J6335_14620 PF08946 Osmosensory transporter coiled coil J6335_14620 PF00083 Sugar (and other) transporter J6335_14625 PF01569 PAP2 superfamily J6335_14630 PF04551 GcpE protein J6335_14640 PF00072 Response regulator receiver domain J6335_14645 PF02013 Cellulose or protein binding domain J6335_14645 PF00150 Cellulase (glycosyl hydrolase family 5) J6335_14650 PF00563 EAL domain J6335_14650 PF01590 GAF domain J6335_14650 PF00990 Diguanylate cyclase, GGDEF domain J6335_14650 PF00360 Phytochrome region J6335_14655 PF00474 Sodium:solute symporter family J6335_14660 PF14310 Fibronectin type III-like domain J6335_14660 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_14660 PF01915 Glycosyl hydrolase family 3 C-terminal domain J6335_14680 PF00342 Phosphoglucose isomerase J6335_14685 PF02261 Aspartate decarboxylase J6335_14690 PF02569 Pantoate-beta-alanine ligase J6335_14695 PF02548 Ketopantoate hydroxymethyltransferase J6335_14700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J6335_14705 PF12626 Polymerase A arginine-rich C-terminus J6335_14705 PF12627 Probable RNA and SrmB- binding site of polymerase A J6335_14705 PF01743 Poly A polymerase head domain J6335_14720 PF02649 Type I GTP cyclohydrolase folE2 J6335_14725 PF01520 N-acetylmuramoyl-L-alanine amidase J6335_14745 PF00083 Sugar (and other) transporter J6335_14755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J6335_14755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J6335_14765 PF17137 Domain of unknown function (DUF5110) J6335_14765 PF01055 Glycosyl hydrolases family 31 J6335_14765 PF16338 Domain of unknown function (DUF4968) J6335_14780 PF03442 Carbohydrate binding domain X2 J6335_14780 PF00942 Cellulose binding domain J6335_14805 PF03466 LysR substrate binding domain J6335_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_14810 PF01081 KDPG and KHG aldolase J6335_14815 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J6335_14815 PF13378 Enolase C-terminal domain-like J6335_14820 PF08450 SMP-30/Gluconolactonase/LRE-like region J6335_14825 PF05035 2-keto-3-deoxy-galactonokinase J6335_14830 PF11953 Domain of unknown function (DUF3470) J6335_14830 PF00037 4Fe-4S binding domain J6335_14840 PF00701 Dihydrodipicolinate synthetase family J6335_14855 PF00578 AhpC/TSA family J6335_14860 PF02562 PhoH-like protein J6335_14860 PF13638 PIN domain J6335_14875 PF08543 Phosphomethylpyrimidine kinase J6335_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_14900 PF03466 LysR substrate binding domain J6335_14910 PF13426 PAS domain J6335_14910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_14910 PF08447 PAS fold J6335_14920 PF02599 Global regulator protein family J6335_14925 PF02272 DHHA1 domain J6335_14925 PF01411 tRNA synthetases class II (A) J6335_14925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J6335_14930 PF02631 RecX family J6335_14935 PF00154 recA bacterial DNA recombination protein J6335_14940 PF01726 LexA DNA binding domain J6335_14940 PF00717 Peptidase S24-like J6335_14945 PF03109 ABC1 family J6335_14950 PF02464 Competence-damaged protein J6335_14955 PF01926 50S ribosome-binding GTPase J6335_14955 PF13167 GTP-binding GTPase N-terminal J6335_14955 PF16360 GTP-binding GTPase Middle Region J6335_14960 PF17209 Hfq protein J6335_14970 PF00809 Pterin binding enzyme J6335_14975 PF00004 ATPase family associated with various cellular activities (AAA) J6335_14975 PF17862 AAA+ lid domain J6335_14975 PF06480 FtsH Extracellular J6335_14975 PF01434 Peptidase family M41 J6335_14980 PF01728 FtsJ-like methyltransferase J6335_14985 PF01985 CRS1 / YhbY (CRM) domain J6335_14990 PF04430 Protein of unknown function (DUF498/DUF598) J6335_14995 PF01551 Peptidase family M23 J6335_14995 PF01476 LysM domain J6335_15000 PF09335 SNARE associated Golgi protein J6335_15010 PF01975 Survival protein SurE J6335_15015 PF01713 Smr domain J6335_15020 PF01142 tRNA pseudouridine synthase D (TruD) J6335_15025 PF02542 YgbB family J6335_15030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J6335_15035 PF04977 Septum formation initiator J6335_15040 PF00113 Enolase, C-terminal TIM barrel domain J6335_15040 PF03952 Enolase, N-terminal domain J6335_15050 PF00793 DAHP synthetase I family J6335_15055 PF00117 Glutamine amidotransferase class-I J6335_15055 PF06418 CTP synthase N-terminus J6335_15065 PF00204 DNA gyrase B J6335_15065 PF00986 DNA gyrase B subunit, carboxyl terminus J6335_15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_15065 PF01751 Toprim domain J6335_15080 PF01384 Phosphate transporter family J6335_15090 PF00571 CBS domain J6335_15090 PF03471 Transporter associated domain J6335_15090 PF01595 Cyclin M transmembrane N-terminal domain J6335_15105 PF00296 Luciferase-like monooxygenase J6335_15110 PF07690 Major Facilitator Superfamily J6335_15115 PF00664 ABC transporter transmembrane region J6335_15115 PF00005 ABC transporter J6335_15120 PF00005 ABC transporter J6335_15155 PF08241 Methyltransferase domain J6335_15170 PF00535 Glycosyl transferase family 2 J6335_15175 PF01943 Polysaccharide biosynthesis protein J6335_15180 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J6335_15200 PF05523 WxcM-like, C-terminal J6335_15215 PF00034 Cytochrome c J6335_15225 PF08281 Sigma-70, region 4 J6335_15225 PF04542 Sigma-70 region 2 J6335_15235 PF00082 Subtilase family J6335_15240 PF01578 Cytochrome C assembly protein J6335_15245 PF04995 Heme exporter protein D (CcmD) J6335_15250 PF03100 CcmE J6335_15255 PF01578 Cytochrome C assembly protein J6335_15255 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J6335_15260 PF08534 Redoxin J6335_15265 PF03918 Cytochrome C biogenesis protein J6335_15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_15275 PF00512 His Kinase A (phospho-acceptor) domain J6335_15275 PF08448 PAS fold J6335_15275 PF13188 PAS domain J6335_15275 PF00072 Response regulator receiver domain J6335_15280 PF06745 KaiC J6335_15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_15285 PF13426 PAS domain J6335_15285 PF00072 Response regulator receiver domain J6335_15300 PF01494 FAD binding domain J6335_15305 PF00672 HAMP domain J6335_15305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_15305 PF02203 Tar ligand binding domain homologue J6335_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_15330 PF03466 LysR substrate binding domain J6335_15335 PF02525 Flavodoxin-like fold J6335_15340 PF02403 Seryl-tRNA synthetase N-terminal domain J6335_15340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J6335_15345 PF03544 Gram-negative bacterial TonB protein C-terminal J6335_15355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J6335_15360 PF01842 ACT domain J6335_15360 PF00800 Prephenate dehydratase J6335_15360 PF01817 Chorismate mutase type II J6335_15365 PF00266 Aminotransferase class-V J6335_15370 PF00174 Oxidoreductase molybdopterin binding domain J6335_15375 PF01794 Ferric reductase like transmembrane component J6335_15400 PF07702 UTRA domain J6335_15400 PF00392 Bacterial regulatory proteins, gntR family J6335_15415 PF07969 Amidohydrolase family J6335_15420 PF00221 Aromatic amino acid lyase J6335_15430 PF17392 Urocanase C-terminal domain J6335_15430 PF17391 Urocanase N-terminal domain J6335_15430 PF01175 Urocanase Rossmann-like domain J6335_15440 PF13360 PQQ-like domain J6335_15445 PF03989 DNA gyrase C-terminal domain, beta-propeller J6335_15445 PF00521 DNA gyrase/topoisomerase IV, subunit A J6335_15450 PF01008 Initiation factor 2 subunit family J6335_15460 PF00152 tRNA synthetases class II (D, K and N) J6335_15465 PF01653 NAD-dependent DNA ligase adenylation domain J6335_15465 PF03120 NAD-dependent DNA ligase OB-fold domain J6335_15465 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J6335_15465 PF12826 Helix-hairpin-helix motif J6335_15465 PF00533 BRCA1 C Terminus (BRCT) domain J6335_15470 PF00155 Aminotransferase class I and II J6335_15480 PF04354 ZipA, C-terminal FtsZ-binding domain J6335_15485 PF02463 RecF/RecN/SMC N terminal domain J6335_15490 PF03948 Ribosomal protein L9, C-terminal domain J6335_15490 PF01281 Ribosomal protein L9, N-terminal domain J6335_15495 PF01084 Ribosomal protein S18 J6335_15500 PF01250 Ribosomal protein S6 J6335_15505 PF01521 Iron-sulphur cluster biosynthesis J6335_15510 PF01336 OB-fold nucleic acid binding domain J6335_15510 PF00152 tRNA synthetases class II (D, K and N) J6335_15545 PF00072 Response regulator receiver domain J6335_15545 PF00196 Bacterial regulatory proteins, luxR family J6335_15590 PF00484 Carbonic anhydrase J6335_15595 PF06052 3-hydroxyanthranilic acid dioxygenase J6335_15605 PF00266 Aminotransferase class-V J6335_15610 PF01494 FAD binding domain J6335_15620 PF08411 Exonuclease C-terminal J6335_15620 PF00929 Exonuclease J6335_15640 PF01513 ATP-NAD kinase J6335_15645 PF02926 THUMP domain J6335_15645 PF01170 Putative RNA methylase family UPF0020 J6335_15645 PF10672 S-adenosylmethionine-dependent methyltransferase J6335_15655 PF12848 ABC transporter J6335_15655 PF16326 ABC transporter C-terminal domain J6335_15655 PF00005 ABC transporter J6335_15685 PF00581 Rhodanese-like domain J6335_15690 PF00293 NUDIX domain J6335_15695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J6335_15695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J6335_15700 PF00378 Enoyl-CoA hydratase/isomerase J6335_15710 PF00730 HhH-GPD superfamily base excision DNA repair protein J6335_15710 PF00633 Helix-hairpin-helix motif J6335_15710 PF10576 Iron-sulfur binding domain of endonuclease III J6335_15725 PF07660 Secretin and TonB N terminus short domain J6335_15725 PF07715 TonB-dependent Receptor Plug Domain J6335_15725 PF00593 TonB dependent receptor J6335_15735 PF04183 IucA / IucC family J6335_15735 PF06276 Ferric iron reductase FhuF-like transporter J6335_15740 PF07690 Major Facilitator Superfamily J6335_15745 PF04183 IucA / IucC family J6335_15745 PF06276 Ferric iron reductase FhuF-like transporter J6335_15750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J6335_15750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J6335_15770 PF02654 Cobalamin-5-phosphate synthase J6335_15780 PF02277 Phosphoribosyltransferase J6335_15785 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase J6335_15790 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain J6335_15790 PF07685 CobB/CobQ-like glutamine amidotransferase domain J6335_15795 PF00155 Aminotransferase class I and II J6335_15800 PF03186 CobD/Cbib protein J6335_15800 PF17113 Regulatory signalling modulator protein AmpE J6335_15805 PF12557 Cob(I)alamin adenosyltransferase N terminal J6335_15805 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP J6335_15825 PF07715 TonB-dependent Receptor Plug Domain J6335_15825 PF00593 TonB dependent receptor J6335_15835 PF02861 Clp amino terminal domain, pathogenicity island component J6335_15835 PF10431 C-terminal, D2-small domain, of ClpB protein J6335_15835 PF17871 AAA lid domain J6335_15835 PF07724 AAA domain (Cdc48 subfamily) J6335_15835 PF00004 ATPase family associated with various cellular activities (AAA) J6335_15840 PF01541 GIY-YIG catalytic domain J6335_15875 PF00593 TonB dependent receptor J6335_15875 PF07715 TonB-dependent Receptor Plug Domain J6335_15880 PF02358 Trehalose-phosphatase J6335_15885 PF00723 Glycosyl hydrolases family 15 J6335_15890 PF00982 Glycosyltransferase family 20 J6335_15895 PF01011 PQQ enzyme repeat J6335_15905 PF00872 Transposase, Mutator family J6335_15915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_15915 PF00672 HAMP domain J6335_15915 PF02203 Tar ligand binding domain homologue J6335_15920 PF04134 Protein of unknown function, DUF393 J6335_15930 PF02578 Multi-copper polyphenol oxidoreductase laccase J6335_15935 PF00849 RNA pseudouridylate synthase J6335_15940 PF13525 Outer membrane lipoprotein J6335_15950 PF00795 Carbon-nitrogen hydrolase J6335_15950 PF02540 NAD synthase J6335_15965 PF00549 CoA-ligase J6335_15965 PF02629 CoA binding domain J6335_15970 PF00549 CoA-ligase J6335_15970 PF08442 ATP-grasp domain J6335_15975 PF00512 His Kinase A (phospho-acceptor) domain J6335_15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_15980 PF00158 Sigma-54 interaction domain J6335_15980 PF00072 Response regulator receiver domain J6335_15980 PF02954 Bacterial regulatory protein, Fis family J6335_15990 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J6335_15990 PF00437 Type II/IV secretion system protein J6335_15995 PF00437 Type II/IV secretion system protein J6335_15995 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J6335_16000 PF07963 Prokaryotic N-terminal methylation motif J6335_16000 PF00114 Pilin (bacterial filament) J6335_16005 PF07963 Prokaryotic N-terminal methylation motif J6335_16005 PF00114 Pilin (bacterial filament) J6335_16010 PF00872 Transposase, Mutator family J6335_16015 PF00482 Type II secretion system (T2SS), protein F J6335_16020 PF06750 Bacterial Peptidase A24 N-terminal domain J6335_16020 PF01478 Type IV leader peptidase family J6335_16025 PF01121 Dephospho-CoA kinase J6335_16045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_16045 PF00989 PAS fold J6335_16045 PF00512 His Kinase A (phospho-acceptor) domain J6335_16045 PF11808 Phosphate regulon sensor protein PhoR J6335_16050 PF00486 Transcriptional regulatory protein, C terminal J6335_16050 PF00072 Response regulator receiver domain J6335_16060 PF18030 RimK PreATP-grasp domain J6335_16060 PF08443 RimK-like ATP-grasp domain J6335_16065 PF00128 Alpha amylase, catalytic domain J6335_16065 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J6335_16075 PF00872 Transposase, Mutator family J6335_16100 PF04002 RadC-like JAB domain J6335_16125 PF00872 Transposase, Mutator family J6335_16160 PF00657 GDSL-like Lipase/Acylhydrolase J6335_16160 PF03797 Autotransporter beta-domain J6335_16170 PF05690 Thiazole biosynthesis protein ThiG J6335_16175 PF02390 Putative methyltransferase J6335_16180 PF03600 Citrate transporter J6335_16180 PF02080 TrkA-C domain J6335_16200 PF01557 Fumarylacetoacetate (FAA) hydrolase family J6335_16205 PF01741 Large-conductance mechanosensitive channel, MscL J6335_16215 PF00356 Bacterial regulatory proteins, lacI family J6335_16225 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain J6335_16225 PF02837 Glycosyl hydrolases family 2, sugar binding domain J6335_16225 PF00703 Glycosyl hydrolases family 2 J6335_16230 PF10566 Glycoside hydrolase 97 J6335_16230 PF14508 Glycosyl-hydrolase 97 N-terminal J6335_16230 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation J6335_16235 PF00135 Carboxylesterase family J6335_16240 PF00588 SpoU rRNA Methylase family J6335_16240 PF08032 RNA 2'-O ribose methyltransferase substrate binding J6335_16250 PF01433 Peptidase family M1 domain J6335_16250 PF11838 ERAP1-like C-terminal domain J6335_16255 PF00873 AcrB/AcrD/AcrF family J6335_16260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_16260 PF00529 HlyD membrane-fusion protein of T1SS J6335_16265 PF00009 Elongation factor Tu GTP binding domain J6335_16270 PF01507 Phosphoadenosine phosphosulfate reductase family J6335_16275 PF00258 Flavodoxin J6335_16275 PF00667 FAD binding domain J6335_16275 PF00175 Oxidoreductase NAD-binding domain J6335_16280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J6335_16280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J6335_16285 PF01507 Phosphoadenosine phosphosulfate reductase family J6335_16305 PF01627 Hpt domain J6335_16305 PF00512 His Kinase A (phospho-acceptor) domain J6335_16305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_16305 PF00072 Response regulator receiver domain J6335_16315 PF03466 LysR substrate binding domain J6335_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_16320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J6335_16320 PF10414 Sirohaem synthase dimerisation region J6335_16320 PF14824 Sirohaem biosynthesis protein central J6335_16325 PF00291 Pyridoxal-phosphate dependent enzyme J6335_16335 PF01661 Macro domain J6335_16340 PF00274 Fructose-bisphosphate aldolase class-I J6335_16345 PF00224 Pyruvate kinase, barrel domain J6335_16345 PF02887 Pyruvate kinase, alpha/beta domain J6335_16350 PF13419 Haloacid dehalogenase-like hydrolase J6335_16355 PF00162 Phosphoglycerate kinase J6335_16385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J6335_16385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J6335_16395 PF03922 OmpW family J6335_16410 PF04273 Putative phosphatase (DUF442) J6335_16410 PF00753 Metallo-beta-lactamase superfamily J6335_16420 PF00528 Binding-protein-dependent transport system inner membrane component J6335_16425 PF00005 ABC transporter J6335_16425 PF03459 TOBE domain J6335_16445 PF00512 His Kinase A (phospho-acceptor) domain J6335_16445 PF08521 Two-component sensor kinase N-terminal J6335_16445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_16450 PF00072 Response regulator receiver domain J6335_16450 PF00486 Transcriptional regulatory protein, C terminal J6335_16470 PF00501 AMP-binding enzyme J6335_16495 PF01476 LysM domain J6335_16495 PF03734 L,D-transpeptidase catalytic domain J6335_16500 PF04225 Opacity-associated protein A LysM-like domain J6335_16500 PF01551 Peptidase family M23 J6335_16505 PF07715 TonB-dependent Receptor Plug Domain J6335_16505 PF00593 TonB dependent receptor J6335_16520 PF02779 Transketolase, pyrimidine binding domain J6335_16520 PF02780 Transketolase, C-terminal domain J6335_16520 PF00456 Transketolase, thiamine diphosphate binding domain J6335_16525 PF00375 Sodium:dicarboxylate symporter family J6335_16535 PF07584 Aerotolerance regulator N-terminal J6335_16535 PF00092 von Willebrand factor type A domain J6335_16555 PF17863 AAA lid domain J6335_16555 PF07726 ATPase family associated with various cellular activities (AAA) J6335_16560 PF11741 AMIN domain J6335_16560 PF00263 Bacterial type II and III secretion system protein J6335_16560 PF03958 Bacterial type II/III secretion system short domain J6335_16560 PF07660 Secretin and TonB N terminus short domain J6335_16565 PF04351 Pilus assembly protein, PilP J6335_16570 PF04350 Pilus assembly protein, PilO J6335_16575 PF05137 Fimbrial assembly protein (PilN) J6335_16580 PF11104 Type IV pilus assembly protein PilM; J6335_16585 PF17092 Penicillin-binding protein OB-like domain J6335_16585 PF00905 Penicillin binding protein transpeptidase domain J6335_16585 PF00912 Transglycosylase J6335_16595 PF00285 Citrate synthase, C-terminal domain J6335_16600 PF01197 Ribosomal protein L31 J6335_16605 PF01156 Inosine-uridine preferring nucleoside hydrolase J6335_16610 PF00270 DEAD/DEAH box helicase J6335_16610 PF00271 Helicase conserved C-terminal domain J6335_16610 PF17191 RecG wedge domain J6335_16615 PF01042 Endoribonuclease L-PSP J6335_16620 PF02824 TGS domain J6335_16620 PF13291 ACT domain J6335_16620 PF04607 Region found in RelA / SpoT proteins J6335_16625 PF01192 RNA polymerase Rpb6 J6335_16630 PF00625 Guanylate kinase J6335_16635 PF08340 Domain of unknown function (DUF1732) J6335_16635 PF03755 YicC-like family, N-terminal region J6335_16640 PF01138 3' exoribonuclease family, domain 1 J6335_16640 PF03725 3' exoribonuclease family, domain 2 J6335_16650 PF01725 Ham1 family J6335_16655 PF06969 HemN C-terminal domain J6335_16655 PF04055 Radical SAM superfamily J6335_16670 PF00557 Metallopeptidase family M24 J6335_16680 PF00557 Metallopeptidase family M24 J6335_16680 PF05195 Aminopeptidase P, N-terminal domain J6335_16685 PF03695 Uncharacterised protein family (UPF0149) J6335_16695 PF05164 Cell division protein ZapA J6335_16705 PF01812 5-formyltetrahydrofolate cyclo-ligase family J6335_16715 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J6335_16725 PF13369 Transglutaminase-like superfamily J6335_16730 PF00301 Rubredoxin J6335_16735 PF02581 Thiamine monophosphate synthase J6335_16755 PF00202 Aminotransferase class-III J6335_16760 PF17874 MalT-like TPR region J6335_16760 PF00196 Bacterial regulatory proteins, luxR family J6335_16765 PF00127 Copper binding proteins, plastocyanin/azurin family J6335_16770 PF00155 Aminotransferase class I and II J6335_16780 PF00034 Cytochrome c J6335_16780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III J6335_16785 PF01593 Flavin containing amine oxidoreductase J6335_16800 PF00202 Aminotransferase class-III J6335_16805 PF00027 Cyclic nucleotide-binding domain J6335_16805 PF00520 Ion transport protein J6335_16820 PF01569 PAP2 superfamily J6335_16825 PF01062 Bestrophin, RFP-TM, chloride channel J6335_16835 PF01225 Mur ligase family, catalytic domain J6335_16835 PF08245 Mur ligase middle domain J6335_16835 PF02875 Mur ligase family, glutamate ligase domain J6335_16845 PF00365 Phosphofructokinase J6335_16855 PF03030 Inorganic H+ pyrophosphatase J6335_16865 PF00719 Inorganic pyrophosphatase J6335_16875 PF07715 TonB-dependent Receptor Plug Domain J6335_16875 PF00593 TonB dependent receptor J6335_16880 PF12833 Helix-turn-helix domain J6335_16885 PF18500 CadC C-terminal domain 1 J6335_16885 PF00486 Transcriptional regulatory protein, C terminal J6335_16890 PF13667 ThiC-associated domain J6335_16890 PF01964 Radical SAM ThiC family J6335_16895 PF07715 TonB-dependent Receptor Plug Domain J6335_16895 PF00593 TonB dependent receptor J6335_16900 PF02203 Tar ligand binding domain homologue J6335_16900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain J6335_16900 PF00672 HAMP domain J6335_16910 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J6335_16910 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J6335_16915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J6335_16915 PF00205 Thiamine pyrophosphate enzyme, central domain J6335_16915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J6335_16925 PF00291 Pyridoxal-phosphate dependent enzyme J6335_16930 PF00682 HMGL-like J6335_16930 PF08502 LeuA allosteric (dimerisation) domain J6335_16935 PF00180 Isocitrate/isopropylmalate dehydrogenase J6335_16940 PF00694 Aconitase C-terminal domain J6335_16945 PF00330 Aconitase family (aconitate hydratase) J6335_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_16970 PF02321 Outer membrane efflux protein J6335_16975 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J6335_16980 PF03279 Bacterial lipid A biosynthesis acyltransferase J6335_17005 PF03949 Malic enzyme, NAD binding domain J6335_17005 PF00390 Malic enzyme, N-terminal domain J6335_17005 PF01515 Phosphate acetyl/butaryl transferase J6335_17010 PF00375 Sodium:dicarboxylate symporter family J6335_17020 PF00512 His Kinase A (phospho-acceptor) domain J6335_17020 PF02743 Cache domain J6335_17020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17025 PF07690 Major Facilitator Superfamily J6335_17035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_17035 PF03466 LysR substrate binding domain J6335_17040 PF00248 Aldo/keto reductase family J6335_17055 PF00196 Bacterial regulatory proteins, luxR family J6335_17055 PF00072 Response regulator receiver domain J6335_17065 PF08521 Two-component sensor kinase N-terminal J6335_17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17065 PF00512 His Kinase A (phospho-acceptor) domain J6335_17070 PF00486 Transcriptional regulatory protein, C terminal J6335_17070 PF00072 Response regulator receiver domain J6335_17080 PF03600 Citrate transporter J6335_17085 PF00106 short chain dehydrogenase J6335_17090 PF00356 Bacterial regulatory proteins, lacI family J6335_17105 PF00128 Alpha amylase, catalytic domain J6335_17120 PF03193 RsgA GTPase J6335_17125 PF00155 Aminotransferase class I and II J6335_17140 PF01522 Polysaccharide deacetylase J6335_17145 PF00462 Glutaredoxin J6335_17160 PF01979 Amidohydrolase family J6335_17165 PF01979 Amidohydrolase family J6335_17190 PF00872 Transposase, Mutator family J6335_17200 PF02645 Uncharacterised protein, DegV family COG1307 J6335_17215 PF00756 Putative esterase J6335_17220 PF04828 Glutathione-dependent formaldehyde-activating enzyme J6335_17225 PF08240 Alcohol dehydrogenase GroES-like domain J6335_17225 PF00107 Zinc-binding dehydrogenase J6335_17230 PF02583 Metal-sensitive transcriptional repressor J6335_17245 PF00486 Transcriptional regulatory protein, C terminal J6335_17245 PF00072 Response regulator receiver domain J6335_17250 PF00672 HAMP domain J6335_17250 PF00512 His Kinase A (phospho-acceptor) domain J6335_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17255 PF04107 Glutamate-cysteine ligase family 2(GCS2) J6335_17265 PF01926 50S ribosome-binding GTPase J6335_17270 PF00034 Cytochrome c J6335_17280 PF01323 DSBA-like thioredoxin domain J6335_17290 PF02028 BCCT, betaine/carnitine/choline family transporter J6335_17295 PF00171 Aldehyde dehydrogenase family J6335_17300 PF05199 GMC oxidoreductase J6335_17300 PF00732 GMC oxidoreductase J6335_17305 PF00544 Pectate lyase J6335_17325 PF01066 CDP-alcohol phosphatidyltransferase J6335_17335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J6335_17335 PF03129 Anticodon binding domain J6335_17335 PF04073 Aminoacyl-tRNA editing domain J6335_17340 PF00816 H-NS histone family J6335_17350 PF02405 Permease MlaE J6335_17355 PF00005 ABC transporter J6335_17360 PF03886 ABC-type transport auxiliary lipoprotein component J6335_17360 PF02470 MlaD protein J6335_17380 PF01144 Coenzyme A transferase J6335_17385 PF01144 Coenzyme A transferase J6335_17390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J6335_17390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J6335_17390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J6335_17390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J6335_17395 PF01050 Mannose-6-phosphate isomerase J6335_17395 PF00483 Nucleotidyl transferase J6335_17400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J6335_17400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J6335_17400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J6335_17405 PF04321 RmlD substrate binding domain J6335_17410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase J6335_17415 PF00483 Nucleotidyl transferase J6335_17420 PF16363 GDP-mannose 4,6 dehydratase J6335_17425 PF01012 Electron transfer flavoprotein domain J6335_17430 PF01012 Electron transfer flavoprotein domain J6335_17430 PF00766 Electron transfer flavoprotein FAD-binding domain J6335_17440 PF01040 UbiA prenyltransferase family J6335_17445 PF01565 FAD binding domain J6335_17445 PF04030 D-arabinono-1,4-lactone oxidase J6335_17450 PF00106 short chain dehydrogenase J6335_17455 PF01370 NAD dependent epimerase/dehydratase family J6335_17460 PF01593 Flavin containing amine oxidoreductase J6335_17480 PF01370 NAD dependent epimerase/dehydratase family J6335_17485 PF16363 GDP-mannose 4,6 dehydratase J6335_17490 PF00534 Glycosyl transferases group 1 J6335_17490 PF13477 Glycosyl transferase 4-like J6335_17495 PF00069 Protein kinase domain J6335_17495 PF13847 Methyltransferase domain J6335_17500 PF00005 ABC transporter J6335_17510 PF13439 Glycosyltransferase Family 4 J6335_17510 PF00534 Glycosyl transferases group 1 J6335_17515 PF01053 Cys/Met metabolism PLP-dependent enzyme J6335_17520 PF00571 CBS domain J6335_17520 PF00291 Pyridoxal-phosphate dependent enzyme J6335_17540 PF00437 Type II/IV secretion system protein J6335_17545 PF02798 Glutathione S-transferase, N-terminal domain J6335_17545 PF14497 Glutathione S-transferase, C-terminal domain J6335_17555 PF00270 DEAD/DEAH box helicase J6335_17555 PF00271 Helicase conserved C-terminal domain J6335_17560 PF01242 6-pyruvoyl tetrahydropterin synthase J6335_17580 PF13185 GAF domain J6335_17590 PF13419 Haloacid dehalogenase-like hydrolase J6335_17595 PF00817 impB/mucB/samB family J6335_17595 PF11799 impB/mucB/samB family C-terminal domain J6335_17600 PF07977 FabA-like domain J6335_17605 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_17605 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_17610 PF08239 Bacterial SH3 domain J6335_17620 PF01432 Peptidase family M3 J6335_17635 PF00394 Multicopper oxidase J6335_17635 PF07731 Multicopper oxidase J6335_17635 PF07732 Multicopper oxidase J6335_17640 PF05275 Copper resistance protein B precursor (CopB) J6335_17645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J6335_17670 PF01380 SIS domain J6335_17675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_17680 PF00005 ABC transporter J6335_17685 PF02687 FtsX-like permease family J6335_17685 PF12704 MacB-like periplasmic core domain J6335_17685 PF00005 ABC transporter J6335_17700 PF02954 Bacterial regulatory protein, Fis family J6335_17700 PF00072 Response regulator receiver domain J6335_17700 PF00158 Sigma-54 interaction domain J6335_17705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17705 PF00512 His Kinase A (phospho-acceptor) domain J6335_17710 PF00132 Bacterial transferase hexapeptide (six repeats) J6335_17710 PF14602 Hexapeptide repeat of succinyl-transferase J6335_17710 PF12804 MobA-like NTP transferase domain J6335_17730 PF01817 Chorismate mutase type II J6335_17735 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain J6335_17735 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J6335_17740 PF02874 ATP synthase alpha/beta family, beta-barrel domain J6335_17740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J6335_17745 PF00231 ATP synthase J6335_17750 PF02874 ATP synthase alpha/beta family, beta-barrel domain J6335_17750 PF00306 ATP synthase alpha/beta chain, C terminal domain J6335_17750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J6335_17755 PF00213 ATP synthase delta (OSCP) subunit J6335_17760 PF00430 ATP synthase B/B' CF(0) J6335_17765 PF00137 ATP synthase subunit C J6335_17770 PF00119 ATP synthase A chain J6335_17790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J6335_17790 PF07992 Pyridine nucleotide-disulphide oxidoreductase J6335_17800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J6335_17800 PF00364 Biotin-requiring enzyme J6335_17800 PF02817 e3 binding domain J6335_17830 PF03180 NLPA lipoprotein J6335_17835 PF00528 Binding-protein-dependent transport system inner membrane component J6335_17840 PF09383 NIL domain J6335_17840 PF00005 ABC transporter J6335_17845 PF00892 EamA-like transporter family J6335_17850 PF04461 Protein of unknown function (DUF520) J6335_17860 PF00512 His Kinase A (phospho-acceptor) domain J6335_17860 PF18415 Histidine kinase receptor ArcB trans-membrane domain J6335_17860 PF01627 Hpt domain J6335_17860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17860 PF00989 PAS fold J6335_17860 PF00072 Response regulator receiver domain J6335_17885 PF13419 Haloacid dehalogenase-like hydrolase J6335_17890 PF00849 RNA pseudouridylate synthase J6335_17890 PF01479 S4 domain J6335_17895 PF08468 Methyltransferase small domain N-terminal J6335_17895 PF05175 Methyltransferase small domain J6335_17910 PF01609 Transposase DDE domain J6335_17910 PF05598 Transposase domain (DUF772) J6335_17915 PF00872 Transposase, Mutator family J6335_17920 PF07995 Glucose / Sorbosone dehydrogenase J6335_17930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_17930 PF00512 His Kinase A (phospho-acceptor) domain J6335_17930 PF00989 PAS fold J6335_17950 PF00842 Alanine racemase, C-terminal domain J6335_17950 PF01168 Alanine racemase, N-terminal domain J6335_17955 PF01266 FAD dependent oxidoreductase J6335_17960 PF01037 Lrp/AsnC ligand binding domain J6335_17970 PF01641 SelR domain J6335_17980 PF01618 MotA/TolQ/ExbB proton channel family J6335_17985 PF13677 Membrane MotB of proton-channel complex MotA/MotB J6335_17985 PF00691 OmpA family J6335_18010 PF01061 ABC-2 type transporter J6335_18015 PF00005 ABC transporter J6335_18020 PF00999 Sodium/hydrogen exchanger family J6335_18025 PF02469 Fasciclin domain J6335_18030 PF03167 Uracil DNA glycosylase superfamily J6335_18040 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase J6335_18050 PF03466 LysR substrate binding domain J6335_18050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_18055 PF03358 NADPH-dependent FMN reductase J6335_18060 PF00248 Aldo/keto reductase family J6335_18070 PF01431 Peptidase family M13 J6335_18070 PF05649 Peptidase family M13 J6335_18085 PF13520 Amino acid permease J6335_18095 PF04397 LytTr DNA-binding domain J6335_18095 PF00072 Response regulator receiver domain J6335_18100 PF06580 Histidine kinase J6335_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_18100 PF02743 Cache domain J6335_18100 PF00672 HAMP domain J6335_18115 PF05974 Domain of unknown function (DUF892) J6335_18120 PF05067 Manganese containing catalase J6335_18140 PF01739 CheR methyltransferase, SAM binding domain J6335_18140 PF01339 CheB methylesterase J6335_18140 PF08448 PAS fold J6335_18140 PF03705 CheR methyltransferase, all-alpha domain J6335_18155 PF00158 Sigma-54 interaction domain J6335_18155 PF00072 Response regulator receiver domain J6335_18155 PF02954 Bacterial regulatory protein, Fis family J6335_18170 PF01654 Cytochrome bd terminal oxidase subunit I J6335_18175 PF02322 Cytochrome bd terminal oxidase subunit II J6335_18210 PF08240 Alcohol dehydrogenase GroES-like domain J6335_18210 PF13823 Alcohol dehydrogenase GroES-associated J6335_18210 PF00107 Zinc-binding dehydrogenase J6335_18220 PF00872 Transposase, Mutator family J6335_18275 PF00005 ABC transporter J6335_18285 PF03466 LysR substrate binding domain J6335_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_18290 PF01042 Endoribonuclease L-PSP J6335_18320 PF01740 STAS domain J6335_18320 PF00916 Sulfate permease family J6335_18325 PF00654 Voltage gated chloride channel J6335_18335 PF00557 Metallopeptidase family M24 J6335_18345 PF03466 LysR substrate binding domain J6335_18345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_18370 PF04545 Sigma-70, region 4 J6335_18370 PF04539 Sigma-70 region 3 J6335_18370 PF00140 Sigma-70 factor, region 1.2 J6335_18370 PF03979 Sigma-70 factor, region 1.1 J6335_18370 PF04546 Sigma-70, non-essential region J6335_18370 PF04542 Sigma-70 region 2 J6335_18375 PF02580 D-Tyr-tRNA(Tyr) deacylase J6335_18380 PF03279 Bacterial lipid A biosynthesis acyltransferase J6335_18390 PF00925 GTP cyclohydrolase II J6335_18410 PF00535 Glycosyl transferase family 2 J6335_18425 PF01029 NusB family J6335_18425 PF01189 16S rRNA methyltransferase RsmB/F J6335_18430 PF02911 Formyl transferase, C-terminal domain J6335_18430 PF00551 Formyl transferase J6335_18435 PF01327 Polypeptide deformylase J6335_18440 PF01476 LysM domain J6335_18445 PF02481 DNA recombination-mediator protein A J6335_18445 PF17782 DprA winged helix domain J6335_18450 PF04361 Protein of unknown function (DUF494) J6335_18455 PF07963 Prokaryotic N-terminal methylation motif J6335_18455 PF00114 Pilin (bacterial filament) J6335_18465 PF01131 DNA topoisomerase J6335_18465 PF01751 Toprim domain J6335_18465 PF13368 Topoisomerase C-terminal repeat J6335_18470 PF01300 Telomere recombination J6335_18495 PF01343 Peptidase family S49 J6335_18500 PF01554 MatE J6335_18520 PF00271 Helicase conserved C-terminal domain J6335_18520 PF17764 3′ DNA-binding domain (3′BD) J6335_18520 PF18074 Primosomal protein N C-terminal domain J6335_18520 PF00270 DEAD/DEAH box helicase J6335_18520 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J6335_18525 PF00043 Glutathione S-transferase, C-terminal domain J6335_18525 PF13417 Glutathione S-transferase, N-terminal domain J6335_18545 PF03458 UPF0126 domain J6335_18550 PF04542 Sigma-70 region 2 J6335_18550 PF04545 Sigma-70, region 4 J6335_18555 PF03167 Uracil DNA glycosylase superfamily J6335_18560 PF00072 Response regulator receiver domain J6335_18560 PF01339 CheB methylesterase J6335_18565 PF18075 FtsX extracellular domain J6335_18570 PF00005 ABC transporter J6335_18575 PF12300 ATP-dependent RNA helicase RhlB J6335_18575 PF00271 Helicase conserved C-terminal domain J6335_18575 PF00270 DEAD/DEAH box helicase J6335_18580 PF00085 Thioredoxin J6335_18585 PF07498 Rho termination factor, N-terminal domain J6335_18585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J6335_18585 PF07497 Rho termination factor, RNA-binding domain J6335_18595 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) J6335_18610 PF03971 Monomeric isocitrate dehydrogenase J6335_18620 PF04972 BON domain J6335_18620 PF01476 LysM domain J6335_18625 PF14489 QueF-like protein J6335_18625 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J6335_18630 PF07687 Peptidase dimerisation domain J6335_18630 PF01546 Peptidase family M20/M25/M40 J6335_18635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_18640 PF00873 AcrB/AcrD/AcrF family J6335_18645 PF00873 AcrB/AcrD/AcrF family J6335_18660 PF07063 Domain of unknown function (DUF1338) J6335_18700 PF01427 D-ala-D-ala dipeptidase J6335_18705 PF01510 N-acetylmuramoyl-L-alanine amidase J6335_18725 PF13520 Amino acid permease J6335_18745 PF00872 Transposase, Mutator family J6335_18755 PF07995 Glucose / Sorbosone dehydrogenase J6335_18760 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_18760 PF01915 Glycosyl hydrolase family 3 C-terminal domain J6335_18760 PF14310 Fibronectin type III-like domain J6335_18765 PF02152 Dihydroneopterin aldolase J6335_18770 PF00814 Glycoprotease family J6335_18780 PF01165 Ribosomal protein S21 J6335_18785 PF09424 Yqey-like protein J6335_18790 PF03631 Virulence factor BrkB J6335_18795 PF01807 CHC2 zinc finger J6335_18795 PF08275 DNA primase catalytic core, N-terminal domain J6335_18795 PF10410 DnaB-helicase binding domain of primase J6335_18795 PF08278 DNA primase DnaG DnaB-binding J6335_18800 PF13593 SBF-like CPA transporter family (DUF4137) J6335_18810 PF01040 UbiA prenyltransferase family J6335_18835 PF00510 Cytochrome c oxidase subunit III J6335_18840 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 J6335_18850 PF00115 Cytochrome C and Quinol oxidase polypeptide I J6335_18855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain J6335_18855 PF02790 Cytochrome C oxidase subunit II, transmembrane domain J6335_18895 PF00579 tRNA synthetases class I (W and Y) J6335_18900 PF04225 Opacity-associated protein A LysM-like domain J6335_18900 PF01551 Peptidase family M23 J6335_18905 PF03702 Anhydro-N-acetylmuramic acid kinase J6335_18915 PF07690 Major Facilitator Superfamily J6335_18920 PF03372 Endonuclease/Exonuclease/phosphatase family J6335_18925 PF00156 Phosphoribosyl transferase domain J6335_18935 PF13614 AAA domain J6335_18940 PF17762 HTH domain found in ParB protein J6335_18940 PF02195 ParB-like nuclease domain J6335_18950 PF01370 NAD dependent epimerase/dehydratase family J6335_18955 PF00535 Glycosyl transferase family 2 J6335_18970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J6335_18970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J6335_18970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J6335_18970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J6335_18975 PF00692 dUTPase J6335_18980 PF02441 Flavoprotein J6335_18980 PF04127 DNA / pantothenate metabolism flavoprotein J6335_18985 PF04002 RadC-like JAB domain J6335_18990 PF03485 Arginyl tRNA synthetase N terminal domain J6335_18990 PF05746 DALR anticodon binding domain J6335_18990 PF00750 tRNA synthetases class I (R) J6335_19005 PF00106 short chain dehydrogenase J6335_19010 PF01757 Acyltransferase family J6335_19015 PF03033 Glycosyltransferase family 28 N-terminal domain J6335_19020 PF00550 Phosphopantetheine attachment site J6335_19020 PF00501 AMP-binding enzyme J6335_19020 PF00668 Condensation domain J6335_19020 PF13193 AMP-binding enzyme C-terminal domain J6335_19020 PF00975 Thioesterase domain J6335_19025 PF17944 Arginine decarboxylase C-terminal helical extension J6335_19025 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J6335_19025 PF17810 Arginine decarboxylase helical bundle domain J6335_19030 PF17284 Spermidine synthase tetramerisation domain J6335_19050 PF00963 Cohesin domain J6335_19050 PF00754 F5/8 type C domain J6335_19050 PF00041 Fibronectin type III domain J6335_19050 PF02838 Glycosyl hydrolase family 20, domain 2 J6335_19050 PF07555 beta-N-acetylglucosaminidase J6335_19055 PF00543 Nitrogen regulatory protein P-II J6335_19060 PF04380 Membrane fusogenic activity J6335_19065 PF01078 Magnesium chelatase, subunit ChlI J6335_19065 PF13335 Magnesium chelatase, subunit ChlI C-terminal J6335_19080 PF12792 CSS motif domain associated with EAL J6335_19080 PF00563 EAL domain J6335_19085 PF00487 Fatty acid desaturase J6335_19090 PF00970 Oxidoreductase FAD-binding domain J6335_19090 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_19090 PF00175 Oxidoreductase NAD-binding domain J6335_19095 PF00440 Bacterial regulatory proteins, tetR family J6335_19105 PF01139 tRNA-splicing ligase RtcB J6335_19145 PF08338 Domain of unknown function (DUF1731) J6335_19145 PF01370 NAD dependent epimerase/dehydratase family J6335_19150 PF00486 Transcriptional regulatory protein, C terminal J6335_19150 PF00072 Response regulator receiver domain J6335_19155 PF08521 Two-component sensor kinase N-terminal J6335_19155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_19155 PF00512 His Kinase A (phospho-acceptor) domain J6335_19175 PF00595 PDZ domain J6335_19195 PF01594 AI-2E family transporter J6335_19200 PF13419 Haloacid dehalogenase-like hydrolase J6335_19205 PF00883 Cytosol aminopeptidase family, catalytic domain J6335_19205 PF02789 Cytosol aminopeptidase family, N-terminal domain J6335_19215 PF08281 Sigma-70, region 4 J6335_19215 PF04542 Sigma-70 region 2 J6335_19220 PF00199 Catalase J6335_19235 PF00072 Response regulator receiver domain J6335_19235 PF00196 Bacterial regulatory proteins, luxR family J6335_19240 PF07730 Histidine kinase J6335_19245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_19250 PF00005 ABC transporter J6335_19275 PF00892 EamA-like transporter family J6335_19300 PF00872 Transposase, Mutator family J6335_19305 PF00753 Metallo-beta-lactamase superfamily J6335_19310 PF00579 tRNA synthetases class I (W and Y) J6335_19315 PF05532 CsbD-like J6335_19330 PF00491 Arginase family J6335_19355 PF02223 Thymidylate kinase J6335_19370 PF03309 Type III pantothenate kinase J6335_19375 PF02237 Biotin protein ligase C terminal domain J6335_19375 PF08279 HTH domain J6335_19375 PF03099 Biotin/lipoate A/B protein ligase family J6335_19385 PF06167 Glucose-regulated metallo-peptidase M90 J6335_19400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_19405 PF00072 Response regulator receiver domain J6335_19405 PF00486 Transcriptional regulatory protein, C terminal J6335_19415 PF01207 Dihydrouridine synthase (Dus) J6335_19430 PF00199 Catalase J6335_19430 PF06628 Catalase-related immune-responsive J6335_19455 PF00872 Transposase, Mutator family J6335_19465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_19465 PF00529 HlyD membrane-fusion protein of T1SS J6335_19470 PF06733 DEAD_2 J6335_19470 PF13307 Helicase C-terminal domain J6335_19485 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J6335_19485 PF01488 Shikimate / quinate 5-dehydrogenase J6335_19485 PF08501 Shikimate dehydrogenase substrate binding domain J6335_19495 PF00175 Oxidoreductase NAD-binding domain J6335_19495 PF00667 FAD binding domain J6335_19495 PF00258 Flavodoxin J6335_19505 PF00490 Delta-aminolevulinic acid dehydratase J6335_19530 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region J6335_19530 PF00326 Prolyl oligopeptidase family J6335_19560 PF04820 Tryptophan halogenase J6335_19575 PF00005 ABC transporter J6335_19585 PF01381 Helix-turn-helix J6335_19595 PF01229 Glycosyl hydrolases family 39 J6335_19600 PF02583 Metal-sensitive transcriptional repressor J6335_19605 PF01545 Cation efflux family J6335_19610 PF00175 Oxidoreductase NAD-binding domain J6335_19610 PF00970 Oxidoreductase FAD-binding domain J6335_19610 PF00111 2Fe-2S iron-sulfur cluster binding domain J6335_19615 PF00005 ABC transporter J6335_19620 PF01061 ABC-2 type transporter J6335_19625 PF02558 Ketopantoate reductase PanE/ApbA J6335_19625 PF08546 Ketopantoate reductase PanE/ApbA C terminal J6335_19650 PF00085 Thioredoxin J6335_19670 PF00268 Ribonucleotide reductase, small chain J6335_19675 PF03477 ATP cone domain J6335_19675 PF02867 Ribonucleotide reductase, barrel domain J6335_19675 PF00317 Ribonucleotide reductase, all-alpha domain J6335_19685 PF00583 Acetyltransferase (GNAT) family J6335_19685 PF13607 Succinyl-CoA ligase like flavodoxin domain J6335_19685 PF13380 CoA binding domain J6335_19690 PF01769 Divalent cation transporter J6335_19690 PF00571 CBS domain J6335_19690 PF03448 MgtE intracellular N domain J6335_19695 PF00194 Eukaryotic-type carbonic anhydrase J6335_19700 PF00999 Sodium/hydrogen exchanger family J6335_19700 PF02254 TrkA-N domain J6335_19710 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J6335_19710 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J6335_19715 PF00723 Glycosyl hydrolases family 15 J6335_19730 PF05166 YcgL domain J6335_19735 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_19735 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_19745 PF00535 Glycosyl transferase family 2 J6335_19795 PF07977 FabA-like domain J6335_19800 PF01553 Acyltransferase J6335_19810 PF00550 Phosphopantetheine attachment site J6335_19815 PF04820 Tryptophan halogenase J6335_19845 PF01218 Coproporphyrinogen III oxidase J6335_19850 PF00476 DNA polymerase family A J6335_19850 PF01612 3'-5' exonuclease J6335_19850 PF01367 5'-3' exonuclease, C-terminal SAM fold J6335_19850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J6335_19860 PF06812 ImpA, N-terminal, type VI secretion system J6335_19880 PF00069 Protein kinase domain J6335_19905 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE J6335_19910 PF00248 Aldo/keto reductase family J6335_19915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_19915 PF03466 LysR substrate binding domain J6335_19930 PF04717 Type VI secretion system, phage-baseplate injector J6335_19945 PF03793 PASTA domain J6335_19945 PF00069 Protein kinase domain J6335_19955 PF04542 Sigma-70 region 2 J6335_19955 PF08281 Sigma-70, region 4 J6335_19975 PF03372 Endonuclease/Exonuclease/phosphatase family J6335_19985 PF01425 Amidase J6335_20010 PF00872 Transposase, Mutator family J6335_20040 PF05947 Type VI secretion system, TssF J6335_20045 PF04965 Gene 25-like lysozyme J6335_20050 PF07024 ImpE protein J6335_20055 PF05638 Type VI secretion system effector, Hcp J6335_20060 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath J6335_20065 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 J6335_20080 PF14602 Hexapeptide repeat of succinyl-transferase J6335_20080 PF12464 Maltose acetyltransferase J6335_20090 PF13361 UvrD-like helicase C-terminal domain J6335_20090 PF00580 UvrD/REP helicase N-terminal domain J6335_20105 PF13091 PLD-like domain J6335_20105 PF13396 Phospholipase_D-nuclease N-terminal J6335_20110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_20110 PF03466 LysR substrate binding domain J6335_20115 PF03737 Aldolase/RraA J6335_20120 PF04303 PrpF protein J6335_20125 PF04909 Amidohydrolase J6335_20130 PF00471 Ribosomal protein L33 J6335_20135 PF00830 Ribosomal L28 family J6335_20150 PF13533 Biotin-lipoyl like J6335_20170 PF02527 rRNA small subunit methyltransferase G J6335_20175 PF16655 PhoD-like phosphatase, N-terminal domain J6335_20175 PF09423 PhoD-like phosphatase J6335_20180 PF09423 PhoD-like phosphatase J6335_20180 PF16655 PhoD-like phosphatase, N-terminal domain J6335_20185 PF01648 4'-phosphopantetheinyl transferase superfamily J6335_20190 PF04226 Transglycosylase associated protein J6335_20200 PF03372 Endonuclease/Exonuclease/phosphatase family J6335_20205 PF00480 ROK family J6335_20230 PF04341 Protein of unknown function, DUF485 J6335_20240 PF13193 AMP-binding enzyme C-terminal domain J6335_20240 PF00501 AMP-binding enzyme J6335_20240 PF16177 Acetyl-coenzyme A synthetase N-terminus J6335_20245 PF00072 Response regulator receiver domain J6335_20245 PF00196 Bacterial regulatory proteins, luxR family J6335_20275 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J6335_20275 PF04616 Glycosyl hydrolases family 43 J6335_20285 PF00248 Aldo/keto reductase family J6335_20300 PF01557 Fumarylacetoacetate (FAA) hydrolase family J6335_20305 PF13378 Enolase C-terminal domain-like J6335_20305 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J6335_20310 PF05336 L-rhamnose mutarotase J6335_20315 PF07690 Major Facilitator Superfamily J6335_20320 PF09339 IclR helix-turn-helix domain J6335_20320 PF01614 Bacterial transcriptional regulator J6335_20325 PF02311 AraC-like ligand binding domain J6335_20325 PF12833 Helix-turn-helix domain J6335_20335 PF02659 Putative manganese efflux pump J6335_20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_20340 PF00512 His Kinase A (phospho-acceptor) domain J6335_20350 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain J6335_20350 PF06165 Glycosyltransferase family 36 J6335_20365 PF13360 PQQ-like domain J6335_20365 PF13570 PQQ-like domain J6335_20365 PF01011 PQQ enzyme repeat J6335_20385 PF00872 Transposase, Mutator family J6335_20390 PF04357 TamB, inner membrane protein subunit of TAM complex J6335_20395 PF17243 POTRA domain TamA domain 1 J6335_20395 PF01103 Surface antigen J6335_20400 PF00593 TonB dependent receptor J6335_20400 PF07715 TonB-dependent Receptor Plug Domain J6335_20405 PF13181 Tetratricopeptide repeat J6335_20410 PF05746 DALR anticodon binding domain J6335_20410 PF02092 Glycyl-tRNA synthetase beta subunit J6335_20415 PF02091 Glycyl-tRNA synthetase alpha subunit J6335_20420 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J6335_20420 PF00437 Type II/IV secretion system protein J6335_20430 PF00958 GMP synthase C terminal domain J6335_20430 PF00117 Glutamine amidotransferase class-I J6335_20445 PF00902 Sec-independent protein translocase protein (TatC) J6335_20450 PF02416 mttA/Hcf106 family J6335_20455 PF02416 mttA/Hcf106 family J6335_20465 PF00762 Ferrochelatase J6335_20470 PF12697 Alpha/beta hydrolase family J6335_20485 PF04381 Putative exonuclease, RdgC J6335_20490 PF01171 PP-loop family J6335_20500 PF00356 Bacterial regulatory proteins, lacI family J6335_20505 PF07477 Glycosyl hydrolase family 67 C-terminus J6335_20505 PF07488 Glycosyl hydrolase family 67 middle domain J6335_20505 PF03648 Glycosyl hydrolase family 67 N-terminus J6335_20515 PF13378 Enolase C-terminal domain-like J6335_20515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain J6335_20520 PF04616 Glycosyl hydrolases family 43 J6335_20520 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain J6335_20525 PF01915 Glycosyl hydrolase family 3 C-terminal domain J6335_20525 PF00933 Glycosyl hydrolase family 3 N terminal domain J6335_20525 PF14310 Fibronectin type III-like domain J6335_20525 PF07691 PA14 domain J6335_20530 PF08125 Mannitol dehydrogenase C-terminal domain J6335_20530 PF01232 Mannitol dehydrogenase Rossmann domain J6335_20570 PF00171 Aldehyde dehydrogenase family J6335_20585 PF00202 Aminotransferase class-III J6335_20595 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J6335_20595 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J6335_20610 PF08450 SMP-30/Gluconolactonase/LRE-like region J6335_20615 PF00331 Glycosyl hydrolase family 10 J6335_20620 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J6335_20620 PF00703 Glycosyl hydrolases family 2 J6335_20620 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 J6335_20620 PF16355 Domain of unknown function (DUF4982) J6335_20620 PF02837 Glycosyl hydrolases family 2, sugar binding domain J6335_20625 PF02614 Glucuronate isomerase J6335_20630 PF00553 Cellulose binding domain J6335_20630 PF00331 Glycosyl hydrolase family 10 J6335_20630 PF03422 Carbohydrate binding module (family 6) J6335_20635 PF00553 Cellulose binding domain J6335_20635 PF03422 Carbohydrate binding module (family 6) J6335_20635 PF00331 Glycosyl hydrolase family 10 J6335_20655 PF04616 Glycosyl hydrolases family 43 J6335_20690 PF05598 Transposase domain (DUF772) J6335_20690 PF01609 Transposase DDE domain J6335_20715 PF00872 Transposase, Mutator family J6335_20750 PF00698 Acyl transferase domain J6335_20750 PF08240 Alcohol dehydrogenase GroES-like domain J6335_20750 PF00107 Zinc-binding dehydrogenase J6335_20750 PF16197 Ketoacyl-synthetase C-terminal extension J6335_20750 PF02801 Beta-ketoacyl synthase, C-terminal domain J6335_20750 PF00109 Beta-ketoacyl synthase, N-terminal domain J6335_20750 PF00550 Phosphopantetheine attachment site J6335_20750 PF14765 Polyketide synthase dehydratase J6335_20750 PF08659 KR domain J6335_20760 PF01553 Acyltransferase J6335_20770 PF00356 Bacterial regulatory proteins, lacI family J6335_20785 PF04820 Tryptophan halogenase J6335_20790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J6335_20795 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J6335_20800 PF04337 Protein of unknown function, DUF480 J6335_20810 PF06969 HemN C-terminal domain J6335_20810 PF04055 Radical SAM superfamily J6335_20860 PF00580 UvrD/REP helicase N-terminal domain J6335_20860 PF13361 UvrD-like helicase C-terminal domain J6335_20865 PF00265 Thymidine kinase J6335_20870 PF08446 PAS fold J6335_20870 PF00512 His Kinase A (phospho-acceptor) domain J6335_20870 PF00360 Phytochrome region J6335_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J6335_20870 PF01590 GAF domain J6335_20875 PF04349 Periplasmic glucan biosynthesis protein, MdoG J6335_20885 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J6335_20885 PF06827 Zinc finger found in FPG and IleRS J6335_20885 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J6335_20915 PF03594 Benzoate membrane transport protein J6335_20920 PF01590 GAF domain J6335_20920 PF08446 PAS fold J6335_20920 PF13426 PAS domain J6335_20920 PF00360 Phytochrome region J6335_20925 PF01126 Heme oxygenase J6335_20930 PF07690 Major Facilitator Superfamily J6335_20945 PF01263 Aldose 1-epimerase J6335_20955 PF02810 SEC-C motif J6335_20995 PF00872 Transposase, Mutator family J6335_21010 PF01925 Sulfite exporter TauE/SafE J6335_21020 PF00872 Transposase, Mutator family J6335_21040 PF01227 GTP cyclohydrolase I J6335_21050 PF07869 Protein of unknown function (DUF1656) J6335_21055 PF00529 HlyD membrane-fusion protein of T1SS J6335_21055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J6335_21060 PF02321 Outer membrane efflux protein J6335_21065 PF04632 Fusaric acid resistance protein family J6335_21070 PF00083 Sugar (and other) transporter J6335_21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_21080 PF03466 LysR substrate binding domain J6335_21085 PF00106 short chain dehydrogenase J6335_21095 PF13091 PLD-like domain J6335_21095 PF13396 Phospholipase_D-nuclease N-terminal J6335_21120 PF00872 Transposase, Mutator family J6335_21145 PF00849 RNA pseudouridylate synthase J6335_21175 PF07929 Plasmid pRiA4b ORF-3-like protein J6335_21180 PF06511 Type III secretion systems tip complex components J6335_21225 PF07720 Tetratricopeptide repeat J6335_21230 PF01312 FlhB HrpN YscU SpaS Family J6335_21235 PF01311 Bacterial export proteins, family 1 J6335_21240 PF01313 Bacterial export proteins, family 3 J6335_21245 PF00813 FliP family J6335_21265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J6335_21265 PF02874 ATP synthase alpha/beta family, beta-barrel domain J6335_21265 PF18269 T3SS EscN ATPase C-terminal domain J6335_21275 PF00771 FHIPEP family J6335_21280 PF07201 HrpJ-like domain J6335_21285 PF00263 Bacterial type II and III secretion system protein J6335_21285 PF03958 Bacterial type II/III secretion system short domain J6335_21300 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF J6335_21310 PF01514 Secretory protein of YscJ/FliF family J6335_21410 PF05598 Transposase domain (DUF772) J6335_21410 PF01609 Transposase DDE domain J6335_21420 PF06834 TraU protein J6335_21505 PF02785 Biotin carboxylase C-terminal domain J6335_21505 PF00289 Biotin carboxylase, N-terminal domain J6335_21505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J6335_21510 PF01425 Amidase J6335_21575 PF01381 Helix-turn-helix J6335_21585 PF13538 UvrD-like helicase C-terminal domain J6335_21590 PF12705 PD-(D/E)XK nuclease superfamily J6335_21590 PF00580 UvrD/REP helicase N-terminal domain J6335_21590 PF13361 UvrD-like helicase C-terminal domain J6335_21595 PF17946 RecC C-terminal domain J6335_21630 PF00005 ABC transporter J6335_21635 PF02405 Permease MlaE J6335_21640 PF02470 MlaD protein J6335_21645 PF05494 MlaC protein J6335_21655 PF04333 MlaA lipoprotein J6335_21670 PF00255 Glutathione peroxidase J6335_21680 PF02646 RmuC family J6335_21685 PF08240 Alcohol dehydrogenase GroES-like domain J6335_21685 PF00107 Zinc-binding dehydrogenase J6335_21690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J6335_21690 PF03466 LysR substrate binding domain J6335_21710 PF13520 Amino acid permease J6335_21715 PF07971 Glycosyl hydrolase family 92 J6335_21715 PF17678 Glycosyl hydrolase family 92 N-terminal domain J6335_21725 PF10947 Protein of unknown function (DUF2628) J6335_21730 PF00990 Diguanylate cyclase, GGDEF domain J6335_21735 PF13556 PucR C-terminal helix-turn-helix domain J6335_21735 PF17853 GGDEF-like domain J6335_21735 PF05651 Putative sugar diacid recognition J6335_21740 PF02595 Glycerate kinase family J6335_21745 PF07690 Major Facilitator Superfamily J6335_21760 PF17785 PUA-like domain J6335_21760 PF10672 S-adenosylmethionine-dependent methyltransferase J6335_21765 PF03741 Integral membrane protein TerC family J6335_21770 PF01694 Rhomboid family J6335_21775 PF03009 Glycerophosphoryl diester phosphodiesterase family J6335_21785 PF01569 PAP2 superfamily J6335_21790 PF10396 GTP-binding protein TrmE N-terminus J6335_21790 PF12631 MnmE helical domain J6335_21790 PF01926 50S ribosome-binding GTPase J6335_21795 PF01522 Polysaccharide deacetylase J6335_21805 PF14849 YidC periplasmic domain J6335_21805 PF02096 60Kd inner membrane protein J6335_21810 PF00825 Ribonuclease P J6335_21815 PF00468 Ribosomal protein L34 J6335_21835 PF03230 Antirestriction protein J6335_21840 PF00872 Transposase, Mutator family J6335_21855 PF09571 XcyI restriction endonuclease J6335_21860 PF01555 DNA methylase J6335_21885 PF18272 single-stranded DNA binding TraI N-terminal subdomain J6335_21885 PF08751 TrwC relaxase J6335_21885 PF18340 DNA relaxase TraI 2B/2B-like domain J6335_21885 PF08751 TrwC relaxase J6335_21885 PF07057 DNA helicase TraI J6335_21885 PF07057 DNA helicase TraI J6335_21885 PF18340 DNA relaxase TraI 2B/2B-like domain J6335_21885 PF18272 single-stranded DNA binding TraI N-terminal subdomain J6335_21915 PF00872 Transposase, Mutator family J6335_21955 PF01850 PIN domain J6335_21965 PF00239 Resolvase, N terminal domain J6335_21965 PF02796 Helix-turn-helix domain of resolvase J6335_21995 PF11740 Plasmid replication region DNA-binding N-term J6335_22015 PF06067 Domain of unknown function (DUF932) J6335_22045 PF18495 Antitoxin VbhA J6335_22055 PF17841 BID domain of Bartonella effector protein (Bep) J6335_22055 PF02661 Fic/DOC family J6335_22065 PF05598 Transposase domain (DUF772) J6335_22065 PF01609 Transposase DDE domain J6335_22100 PF00872 Transposase, Mutator family J6335_22125 PF00437 Type II/IV secretion system protein J6335_22140 PF03135 CagE, TrbE, VirB family, component of type IV transporter system J6335_22155 PF04610 TrbL/VirB6 plasmid conjugal transfer protein J6335_22170 PF03743 Bacterial conjugation TrbI-like protein J6335_22220 PF01850 PIN domain J6335_22230 PF02796 Helix-turn-helix domain of resolvase J6335_22230 PF00239 Resolvase, N terminal domain J6335_22270 PF00872 Transposase, Mutator family J6335_22325 PF06616 BsuBI/PstI restriction endonuclease domain J6335_22325 PF17728 BsuBI/PstI restriction endonuclease HTH domain J6335_22330 PF07669 Eco57I restriction-modification methylase J6335_22330 PF12950 TaqI-like C-terminal specificity domain