locus-tag class description OM954_00005 PF00308 Bacterial dnaA protein OM954_00005 PF08299 Bacterial dnaA protein helix-turn-helix OM954_00005 PF11638 DnaA N-terminal domain OM954_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain OM954_00010 PF02767 DNA polymerase III beta subunit, central domain OM954_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain OM954_00015 PF02463 RecF/RecN/SMC N terminal domain OM954_00020 PF01751 Toprim domain OM954_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_00020 PF18053 DNA gyrase B subunit insert domain OM954_00020 PF00986 DNA gyrase B subunit, carboxyl terminus OM954_00020 PF00204 DNA gyrase B OM954_00030 PF01435 Peptidase family M48 OM954_00040 PF03544 Gram-negative bacterial TonB protein C-terminal OM954_00045 PF01618 MotA/TolQ/ExbB proton channel family OM954_00050 PF02472 Biopolymer transport protein ExbD/TolR OM954_00055 PF02472 Biopolymer transport protein ExbD/TolR OM954_00075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ OM954_00085 PF13396 Phospholipase_D-nuclease N-terminal OM954_00085 PF13091 PLD-like domain OM954_00100 PF04055 Radical SAM superfamily OM954_00110 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) OM954_00125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OM954_00125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OM954_00130 PF13180 PDZ domain OM954_00130 PF03572 Peptidase family S41 OM954_00135 PF01551 Peptidase family M23 OM954_00145 PF04389 Peptidase family M28 OM954_00155 PF00150 Cellulase (glycosyl hydrolase family 5) OM954_00160 PF00150 Cellulase (glycosyl hydrolase family 5) OM954_00170 PF00150 Cellulase (glycosyl hydrolase family 5) OM954_00175 PF08240 Alcohol dehydrogenase GroES-like domain OM954_00175 PF00107 Zinc-binding dehydrogenase OM954_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster OM954_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_00195 PF00310 Glutamine amidotransferases class-II OM954_00195 PF04898 Glutamate synthase central domain OM954_00195 PF01645 Conserved region in glutamate synthase OM954_00195 PF01493 GXGXG motif OM954_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_00220 PF03466 LysR substrate binding domain OM954_00285 PF00271 Helicase conserved C-terminal domain OM954_00285 PF09369 Domain of unknown function (DUF1998) OM954_00285 PF00270 DEAD/DEAH box helicase OM954_00290 PF03006 Haemolysin-III related OM954_00310 PF00106 short chain dehydrogenase OM954_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_00320 PF03466 LysR substrate binding domain OM954_00340 PF02525 Flavodoxin-like fold OM954_00350 PF01609 Transposase DDE domain OM954_00350 PF05598 Transposase domain (DUF772) OM954_00365 PF05598 Transposase domain (DUF772) OM954_00365 PF01609 Transposase DDE domain OM954_00375 PF05532 CsbD-like OM954_00400 PF01447 Thermolysin metallopeptidase, catalytic domain OM954_00400 PF16485 Protealysin propeptide OM954_00400 PF02868 Thermolysin metallopeptidase, alpha-helical domain OM954_00410 PF13344 Haloacid dehalogenase-like hydrolase OM954_00410 PF00293 NUDIX domain OM954_00425 PF00085 Thioredoxin OM954_00430 PF08946 Osmosensory transporter coiled coil OM954_00430 PF00083 Sugar (and other) transporter OM954_00475 PF07726 ATPase family associated with various cellular activities (AAA) OM954_00475 PF17863 AAA lid domain OM954_00515 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain OM954_00520 PF00155 Aminotransferase class I and II OM954_00525 PF00593 TonB dependent receptor OM954_00525 PF07715 TonB-dependent Receptor Plug Domain OM954_00545 PF02735 Ku70/Ku80 beta-barrel domain OM954_00550 PF01070 FMN-dependent dehydrogenase OM954_00555 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family OM954_00560 PF07730 Histidine kinase OM954_00565 PF00072 Response regulator receiver domain OM954_00565 PF00196 Bacterial regulatory proteins, luxR family OM954_00590 PF12241 Trans-2-enoyl-CoA reductase catalytic region OM954_00590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase OM954_00590 PF07055 Enoyl reductase FAD binding domain OM954_00595 PF01609 Transposase DDE domain OM954_00595 PF05598 Transposase domain (DUF772) OM954_00605 PF00294 pfkB family carbohydrate kinase OM954_00660 PF00872 Transposase, Mutator family OM954_00680 PF05598 Transposase domain (DUF772) OM954_00680 PF01609 Transposase DDE domain OM954_00685 PF05598 Transposase domain (DUF772) OM954_00685 PF01609 Transposase DDE domain OM954_00700 PF00128 Alpha amylase, catalytic domain OM954_00700 PF11896 Domain of unknown function (DUF3416) OM954_00705 PF00128 Alpha amylase, catalytic domain OM954_00705 PF16657 Maltogenic Amylase, C-terminal domain OM954_00710 PF00128 Alpha amylase, catalytic domain OM954_00710 PF02806 Alpha amylase, C-terminal all-beta domain OM954_00710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) OM954_00720 PF00248 Aldo/keto reductase family OM954_00725 PF00135 Carboxylesterase family OM954_00730 PF13472 GDSL-like Lipase/Acylhydrolase family OM954_00730 PF07859 alpha/beta hydrolase fold OM954_00740 PF03480 Bacterial extracellular solute-binding protein, family 7 OM954_00750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component OM954_00755 PF04616 Glycosyl hydrolases family 43 OM954_00755 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain OM954_00760 PF00356 Bacterial regulatory proteins, lacI family OM954_00765 PF04962 KduI/IolB family OM954_00780 PF00657 GDSL-like Lipase/Acylhydrolase OM954_00790 PF00351 Biopterin-dependent aromatic amino acid hydroxylase OM954_00795 PF01037 Lrp/AsnC ligand binding domain OM954_00800 PF07715 TonB-dependent Receptor Plug Domain OM954_00800 PF07660 Secretin and TonB N terminus short domain OM954_00800 PF00593 TonB dependent receptor OM954_00805 PF01734 Patatin-like phospholipase OM954_00815 PF00005 ABC transporter OM954_00830 PF00005 ABC transporter OM954_00830 PF00571 CBS domain OM954_00835 PF00528 Binding-protein-dependent transport system inner membrane component OM954_00845 PF03781 Sulfatase-modifying factor enzyme 1 OM954_00845 PF12867 DinB superfamily OM954_00875 PF10609 NUBPL iron-transfer P-loop NTPase OM954_00875 PF01883 Iron-sulfur cluster assembly protein OM954_00890 PF13091 PLD-like domain OM954_00895 PF03061 Thioesterase superfamily OM954_00920 PF00107 Zinc-binding dehydrogenase OM954_00920 PF08240 Alcohol dehydrogenase GroES-like domain OM954_00930 PF02673 Bacitracin resistance protein BacA OM954_00935 PF03951 Glutamine synthetase, beta-Grasp domain OM954_00935 PF00120 Glutamine synthetase, catalytic domain OM954_00940 PF00543 Nitrogen regulatory protein P-II OM954_00945 PF00909 Ammonium Transporter Family OM954_00950 PF00512 His Kinase A (phospho-acceptor) domain OM954_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_00950 PF00989 PAS fold OM954_00955 PF02954 Bacterial regulatory protein, Fis family OM954_00955 PF00158 Sigma-54 interaction domain OM954_00955 PF00072 Response regulator receiver domain OM954_00960 PF00080 Copper/zinc superoxide dismutase (SODC) OM954_00965 PF00080 Copper/zinc superoxide dismutase (SODC) OM954_00980 PF00108 Thiolase, N-terminal domain OM954_00980 PF02803 Thiolase, C-terminal domain OM954_01015 PF00581 Rhodanese-like domain OM954_01020 PF02556 Preprotein translocase subunit SecB OM954_01025 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus OM954_01025 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus OM954_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_01055 PF02954 Bacterial regulatory protein, Fis family OM954_01055 PF00072 Response regulator receiver domain OM954_01055 PF00158 Sigma-54 interaction domain OM954_01070 PF07690 Major Facilitator Superfamily OM954_01075 PF00588 SpoU rRNA Methylase family OM954_01090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OM954_01090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OM954_01095 PF02661 Fic/DOC family OM954_01095 PF13784 Fic/DOC family N-terminal OM954_01100 PF00561 alpha/beta hydrolase fold OM954_01105 PF03692 Putative zinc- or iron-chelating domain OM954_01110 PF00501 AMP-binding enzyme OM954_01115 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family OM954_01130 PF07478 D-ala D-ala ligase C-terminus OM954_01130 PF01820 D-ala D-ala ligase N-terminus OM954_01140 PF03109 ABC1 family OM954_01150 PF00849 RNA pseudouridylate synthase OM954_01160 PF00472 RF-1 domain OM954_01170 PF01112 Asparaginase OM954_01175 PF01432 Peptidase family M3 OM954_01180 PF12706 Beta-lactamase superfamily domain OM954_01205 PF12833 Helix-turn-helix domain OM954_01210 PF00999 Sodium/hydrogen exchanger family OM954_01220 PF01274 Malate synthase OM954_01225 PF00463 Isocitrate lyase family OM954_01230 PF00990 Diguanylate cyclase, GGDEF domain OM954_01245 PF01609 Transposase DDE domain OM954_01245 PF05598 Transposase domain (DUF772) OM954_01260 PF00326 Prolyl oligopeptidase family OM954_01265 PF02785 Biotin carboxylase C-terminal domain OM954_01265 PF00289 Biotin carboxylase, N-terminal domain OM954_01265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OM954_01265 PF18140 Propionyl-coenzyme A carboxylase BT domain OM954_01265 PF00364 Biotin-requiring enzyme OM954_01270 PF01039 Carboxyl transferase domain OM954_01275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_01275 PF02770 Acyl-CoA dehydrogenase, middle domain OM954_01275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_01330 PF02492 CobW/HypB/UreG, nucleotide-binding domain OM954_01330 PF07683 Cobalamin synthesis protein cobW C-terminal domain OM954_01350 PF03969 AFG1-like ATPase OM954_01355 PF01047 MarR family OM954_01360 PF02566 OsmC-like protein OM954_01380 PF00107 Zinc-binding dehydrogenase OM954_01380 PF16884 N-terminal domain of oxidoreductase OM954_01385 PF00248 Aldo/keto reductase family OM954_01395 PF00849 RNA pseudouridylate synthase OM954_01405 PF04408 Helicase associated domain (HA2) OM954_01405 PF00270 DEAD/DEAH box helicase OM954_01405 PF08482 ATP-dependent helicase C-terminal OM954_01405 PF00271 Helicase conserved C-terminal domain OM954_01410 PF07308 Protein of unknown function (DUF1456) OM954_01415 PF00576 HIUase/Transthyretin family OM954_01420 PF13454 FAD-NAD(P)-binding OM954_01425 PF01014 Uricase OM954_01425 PF09349 OHCU decarboxylase OM954_01440 PF00266 Aminotransferase class-V OM954_01445 PF01546 Peptidase family M20/M25/M40 OM954_01445 PF07687 Peptidase dimerisation domain OM954_01450 PF03466 LysR substrate binding domain OM954_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_01455 PF00561 alpha/beta hydrolase fold OM954_01470 PF01425 Amidase OM954_01475 PF01156 Inosine-uridine preferring nucleoside hydrolase OM954_01485 PF00860 Permease family OM954_01490 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_01495 PF00355 Rieske [2Fe-2S] domain OM954_01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_01500 PF03466 LysR substrate binding domain OM954_01505 PF01026 TatD related DNase OM954_01520 PF03466 LysR substrate binding domain OM954_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_01525 PF07690 Major Facilitator Superfamily OM954_01535 PF00561 alpha/beta hydrolase fold OM954_01540 PF02146 Sir2 family OM954_01545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OM954_01550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OM954_01550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OM954_01560 PF00551 Formyl transferase OM954_01565 PF00072 Response regulator receiver domain OM954_01565 PF00486 Transcriptional regulatory protein, C terminal OM954_01570 PF00672 HAMP domain OM954_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_01570 PF00512 His Kinase A (phospho-acceptor) domain OM954_01575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_01575 PF00529 HlyD membrane-fusion protein of T1SS OM954_01580 PF00873 AcrB/AcrD/AcrF family OM954_01585 PF02321 Outer membrane efflux protein OM954_01585 PF08139 Prokaryotic membrane lipoprotein lipid attachment site OM954_01600 PF02677 Epoxyqueuosine reductase QueH OM954_01605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_01605 PF03466 LysR substrate binding domain OM954_01610 PF03358 NADPH-dependent FMN reductase OM954_01620 PF08267 Cobalamin-independent synthase, N-terminal domain OM954_01620 PF01717 Cobalamin-independent synthase, Catalytic domain OM954_01625 PF03812 2-keto-3-deoxygluconate permease OM954_01640 PF05368 NmrA-like family OM954_01645 PF01638 HxlR-like helix-turn-helix OM954_01660 PF00872 Transposase, Mutator family OM954_01700 PF00920 Dehydratase family OM954_01715 PF00132 Bacterial transferase hexapeptide (six repeats) OM954_01725 PF07690 Major Facilitator Superfamily OM954_01730 PF01966 HD domain OM954_01730 PF11871 Domain of unknown function (DUF3391) OM954_01750 PF00171 Aldehyde dehydrogenase family OM954_01760 PF01494 FAD binding domain OM954_01770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain OM954_01770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain OM954_01775 PF00230 Major intrinsic protein OM954_01780 PF01266 FAD dependent oxidoreductase OM954_01780 PF16901 C-terminal domain of alpha-glycerophosphate oxidase OM954_01785 PF00455 DeoR C terminal sensor domain OM954_01785 PF08220 DeoR-like helix-turn-helix domain OM954_01790 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_01790 PF00970 Oxidoreductase FAD-binding domain OM954_01795 PF00355 Rieske [2Fe-2S] domain OM954_01800 PF01144 Coenzyme A transferase OM954_01810 PF02803 Thiolase, C-terminal domain OM954_01810 PF00108 Thiolase, N-terminal domain OM954_01815 PF00775 Dioxygenase OM954_01815 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal OM954_01825 PF00206 Lyase OM954_01825 PF10397 Adenylosuccinate lyase C-terminus OM954_01830 PF12146 Serine aminopeptidase, S33 OM954_01835 PF02627 Carboxymuconolactone decarboxylase family OM954_01845 PF01614 Bacterial transcriptional regulator OM954_01845 PF09339 IclR helix-turn-helix domain OM954_01855 PF07859 alpha/beta hydrolase fold OM954_01865 PF01134 Glucose inhibited division protein A OM954_01865 PF13932 GidA associated domain OM954_01875 PF00291 Pyridoxal-phosphate dependent enzyme OM954_01895 PF13649 Methyltransferase domain OM954_01905 PF12697 Alpha/beta hydrolase family OM954_01915 PF00155 Aminotransferase class I and II OM954_01920 PF04055 Radical SAM superfamily OM954_01920 PF06968 Biotin and Thiamin Synthesis associated domain OM954_01930 PF01040 UbiA prenyltransferase family OM954_01945 PF05819 NolX protein OM954_01950 PF01609 Transposase DDE domain OM954_01950 PF05598 Transposase domain (DUF772) OM954_01955 PF00872 Transposase, Mutator family OM954_01995 PF01313 Bacterial export proteins, family 3 OM954_02000 PF00813 FliP family OM954_02015 PF00771 FHIPEP family OM954_02020 PF01312 FlhB HrpN YscU SpaS Family OM954_02035 PF01514 Secretory protein of YscJ/FliF family OM954_02050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_02050 PF02874 ATP synthase alpha/beta family, beta-barrel domain OM954_02050 PF18269 T3SS EscN ATPase C-terminal domain OM954_02060 PF01311 Bacterial export proteins, family 1 OM954_02065 PF00263 Bacterial type II and III secretion system protein OM954_02065 PF03958 Bacterial type II/III secretion system short domain OM954_02075 PF01464 Transglycosylase SLT domain OM954_02090 PF12794 Mechanosensitive ion channel inner membrane domain 1 OM954_02090 PF00924 Mechanosensitive ion channel OM954_02090 PF12795 Mechanosensitive ion channel porin domain OM954_02095 PF00884 Sulfatase OM954_02100 PF03109 ABC1 family OM954_02105 PF05661 Protein of unknown function (DUF808) OM954_02110 PF00990 Diguanylate cyclase, GGDEF domain OM954_02115 PF08323 Starch synthase catalytic domain OM954_02115 PF00534 Glycosyl transferases group 1 OM954_02120 PF00128 Alpha amylase, catalytic domain OM954_02120 PF02806 Alpha amylase, C-terminal all-beta domain OM954_02120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) OM954_02125 PF00128 Alpha amylase, catalytic domain OM954_02125 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) OM954_02125 PF11941 Domain of unknown function (DUF3459) OM954_02130 PF02446 4-alpha-glucanotransferase OM954_02135 PF00128 Alpha amylase, catalytic domain OM954_02145 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) OM954_02145 PF00128 Alpha amylase, catalytic domain OM954_02150 PF13460 NAD(P)H-binding OM954_02160 PF03150 Di-haem cytochrome c peroxidase OM954_02175 PF00872 Transposase, Mutator family OM954_02185 PF01609 Transposase DDE domain OM954_02185 PF05598 Transposase domain (DUF772) OM954_02210 PF06903 VirK protein OM954_02215 PF02321 Outer membrane efflux protein OM954_02230 PF00873 AcrB/AcrD/AcrF family OM954_02245 PF00270 DEAD/DEAH box helicase OM954_02245 PF00271 Helicase conserved C-terminal domain OM954_02250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OM954_02250 PF00364 Biotin-requiring enzyme OM954_02260 PF02780 Transketolase, C-terminal domain OM954_02260 PF02779 Transketolase, pyrimidine binding domain OM954_02265 PF00676 Dehydrogenase E1 component OM954_02275 PF03301 Tryptophan 2,3-dioxygenase OM954_02280 PF00854 POT family OM954_02290 PF01047 MarR family OM954_02295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OM954_02300 PF04480 Protein of unknown function (DUF559) OM954_02305 PF04209 homogentisate 1,2-dioxygenase OM954_02325 PF03334 Na+/H+ antiporter subunit OM954_02330 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) OM954_02340 PF00361 Proton-conducting membrane transporter OM954_02345 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L OM954_02350 PF13244 Domain of unknown function (DUF4040) OM954_02350 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter OM954_02350 PF00361 Proton-conducting membrane transporter OM954_02350 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OM954_02365 PF07504 Fungalysin/Thermolysin Propeptide Motif OM954_02365 PF01483 Proprotein convertase P-domain OM954_02365 PF01447 Thermolysin metallopeptidase, catalytic domain OM954_02365 PF02868 Thermolysin metallopeptidase, alpha-helical domain OM954_02370 PF00182 Chitinase class I OM954_02390 PF01259 SAICAR synthetase OM954_02395 PF00226 DnaJ domain OM954_02395 PF05099 Tellurite resistance protein TerB OM954_02405 PF00834 Ribulose-phosphate 3 epimerase family OM954_02415 PF00781 Diacylglycerol kinase catalytic domain OM954_02420 PF04715 Anthranilate synthase component I, N terminal region OM954_02420 PF00425 chorismate binding enzyme OM954_02435 PF00117 Glutamine amidotransferase class-I OM954_02445 PF02885 Glycosyl transferase family, helical bundle domain OM954_02445 PF00591 Glycosyl transferase family, a/b domain OM954_02450 PF00218 Indole-3-glycerol phosphate synthase OM954_02460 PF00325 Bacterial regulatory proteins, crp family OM954_02460 PF00027 Cyclic nucleotide-binding domain OM954_02465 PF02675 S-adenosylmethionine decarboxylase OM954_02470 PF00893 Small Multidrug Resistance protein OM954_02475 PF03232 Ubiquinone biosynthesis protein COQ7 OM954_02480 PF00572 Ribosomal protein L13 OM954_02485 PF00380 Ribosomal protein S9/S16 OM954_02500 PF00293 NUDIX domain OM954_02510 PF00210 Ferritin-like domain OM954_02515 PF01627 Hpt domain OM954_02515 PF00672 HAMP domain OM954_02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_02515 PF00512 His Kinase A (phospho-acceptor) domain OM954_02515 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) OM954_02515 PF00072 Response regulator receiver domain OM954_02520 PF00486 Transcriptional regulatory protein, C terminal OM954_02520 PF00072 Response regulator receiver domain OM954_02540 PF01521 Iron-sulphur cluster biosynthesis OM954_02550 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain OM954_02550 PF09297 NADH pyrophosphatase zinc ribbon domain OM954_02550 PF00293 NUDIX domain OM954_02555 PF03186 CobD/Cbib protein OM954_02555 PF17113 Regulatory signalling modulator protein AmpE OM954_02570 PF07690 Major Facilitator Superfamily OM954_02575 PF03466 LysR substrate binding domain OM954_02575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_02580 PF07690 Major Facilitator Superfamily OM954_02585 PF12805 FUSC-like inner membrane protein yccS OM954_02595 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain OM954_02595 PF02843 Phosphoribosylglycinamide synthetase, C domain OM954_02595 PF02844 Phosphoribosylglycinamide synthetase, N domain OM954_02605 PF02142 MGS-like domain OM954_02605 PF01808 AICARFT/IMPCHase bienzyme OM954_02610 PF01066 CDP-alcohol phosphatidyltransferase OM954_02615 PF12146 Serine aminopeptidase, S33 OM954_02615 PF12147 Putative methyltransferase OM954_02620 PF00782 Dual specificity phosphatase, catalytic domain OM954_02650 PF02954 Bacterial regulatory protein, Fis family OM954_02660 PF01381 Helix-turn-helix OM954_02685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OM954_02685 PF00289 Biotin carboxylase, N-terminal domain OM954_02685 PF02785 Biotin carboxylase C-terminal domain OM954_02695 PF00364 Biotin-requiring enzyme OM954_02700 PF01220 Dehydroquinase class II OM954_02705 PF02683 Cytochrome C biogenesis protein transmembrane region OM954_02705 PF11412 Disulphide bond corrector protein DsbC OM954_02710 PF03091 CutA1 divalent ion tolerance protein OM954_02725 PF00166 Chaperonin 10 Kd subunit OM954_02730 PF00118 TCP-1/cpn60 chaperonin family OM954_02740 PF07715 TonB-dependent Receptor Plug Domain OM954_02740 PF00593 TonB dependent receptor OM954_02745 PF07804 HipA-like C-terminal domain OM954_02750 PF00793 DAHP synthetase I family OM954_02765 PF08450 SMP-30/Gluconolactonase/LRE-like region OM954_02775 PF03710 Glutamate-ammonia ligase adenylyltransferase OM954_02775 PF08335 GlnD PII-uridylyltransferase OM954_02780 PF02592 Putative vitamin uptake transporter OM954_02800 PF05598 Transposase domain (DUF772) OM954_02800 PF01609 Transposase DDE domain OM954_02820 PF00881 Nitroreductase family OM954_02825 PF04264 YceI-like domain OM954_02855 PF16957 Malonate decarboxylase, alpha subunit, transporter OM954_02860 PF06857 Malonate decarboxylase delta subunit (MdcD) OM954_02865 PF01039 Carboxyl transferase domain OM954_02875 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG OM954_02880 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase OM954_02885 PF00698 Acyl transferase domain OM954_02895 PF07729 FCD domain OM954_02895 PF00392 Bacterial regulatory proteins, gntR family OM954_02935 PF07745 Glycosyl hydrolase family 53 OM954_02940 PF17831 Pyruvate dehydrogenase E1 component middle domain OM954_02940 PF00456 Transketolase, thiamine diphosphate binding domain OM954_02950 PF00872 Transposase, Mutator family OM954_02960 PF00106 short chain dehydrogenase OM954_02970 PF01609 Transposase DDE domain OM954_02970 PF05598 Transposase domain (DUF772) OM954_03000 PF00106 short chain dehydrogenase OM954_03010 PF13409 Glutathione S-transferase, N-terminal domain OM954_03065 PF07759 Protein of unknown function (DUF1615) OM954_03070 PF00990 Diguanylate cyclase, GGDEF domain OM954_03075 PF02082 Transcriptional regulator OM954_03080 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_03100 PF00892 EamA-like transporter family OM954_03105 PF03330 Lytic transglycolase OM954_03110 PF00041 Fibronectin type III domain OM954_03110 PF00553 Cellulose binding domain OM954_03110 PF01341 Glycosyl hydrolases family 6 OM954_03120 PF00324 Amino acid permease OM954_03130 PF01544 CorA-like Mg2+ transporter protein OM954_03145 PF01204 Trehalase OM954_03155 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain OM954_03155 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain OM954_03175 PF00563 EAL domain OM954_03175 PF08448 PAS fold OM954_03175 PF13426 PAS domain OM954_03175 PF05231 MASE1 OM954_03175 PF08447 PAS fold OM954_03175 PF00990 Diguanylate cyclase, GGDEF domain OM954_03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_03185 PF00512 His Kinase A (phospho-acceptor) domain OM954_03185 PF09456 RcsC Alpha-Beta-Loop (ABL) OM954_03185 PF00072 Response regulator receiver domain OM954_03195 PF03797 Autotransporter beta-domain OM954_03200 PF16168 Adhesin of bacterial autotransporter system, probable stalk OM954_03200 PF03797 Autotransporter beta-domain OM954_03200 PF13018 Extended Signal Peptide of Type V secretion system OM954_03220 PF13632 Glycosyl transferase family group 2 OM954_03230 PF07694 5TMR of 5TMR-LYT OM954_03230 PF06580 Histidine kinase OM954_03235 PF04397 LytTr DNA-binding domain OM954_03235 PF00072 Response regulator receiver domain OM954_03240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain OM954_03240 PF03900 Porphobilinogen deaminase, C-terminal domain OM954_03275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain OM954_03275 PF00326 Prolyl oligopeptidase family OM954_03285 PF00155 Aminotransferase class I and II OM954_03290 PF00326 Prolyl oligopeptidase family OM954_03290 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain OM954_03295 PF04304 Protein of unknown function (DUF454) OM954_03305 PF01678 Diaminopimelate epimerase OM954_03315 PF00589 Phage integrase family OM954_03315 PF02899 Phage integrase, N-terminal SAM-like domain OM954_03320 PF00227 Proteasome subunit OM954_03325 PF00004 ATPase family associated with various cellular activities (AAA) OM954_03325 PF07724 AAA domain (Cdc48 subfamily) OM954_03325 PF10431 C-terminal, D2-small domain, of ClpB protein OM954_03335 PF13673 Acetyltransferase (GNAT) domain OM954_03340 PF13533 Biotin-lipoyl like OM954_03350 PF01209 ubiE/COQ5 methyltransferase family OM954_03355 PF00563 EAL domain OM954_03355 PF00990 Diguanylate cyclase, GGDEF domain OM954_03355 PF03707 Bacterial signalling protein N terminal repeat OM954_03360 PF11838 ERAP1-like C-terminal domain OM954_03360 PF01433 Peptidase family M1 domain OM954_03375 PF13360 PQQ-like domain OM954_03380 PF00497 Bacterial extracellular solute-binding proteins, family 3 OM954_03395 PF08240 Alcohol dehydrogenase GroES-like domain OM954_03395 PF00107 Zinc-binding dehydrogenase OM954_03405 PF01590 GAF domain OM954_03405 PF02954 Bacterial regulatory protein, Fis family OM954_03405 PF00158 Sigma-54 interaction domain OM954_03420 PF00294 pfkB family carbohydrate kinase OM954_03430 PF04085 rod shape-determining protein MreC OM954_03440 PF03717 Penicillin-binding Protein dimerisation domain OM954_03440 PF00905 Penicillin binding protein transpeptidase domain OM954_03445 PF01098 Cell cycle protein OM954_03450 PF02534 Type IV secretory system Conjugative DNA transfer OM954_03460 PF01609 Transposase DDE domain OM954_03460 PF05598 Transposase domain (DUF772) OM954_03490 PF00295 Glycosyl hydrolases family 28 OM954_03495 PF13406 Transglycosylase SLT domain OM954_03500 PF05036 Sporulation related domain OM954_03500 PF03330 Lytic transglycolase OM954_03505 PF00768 D-alanyl-D-alanine carboxypeptidase OM954_03505 PF07943 Penicillin-binding protein 5, C-terminal domain OM954_03515 PF04359 Protein of unknown function (DUF493) OM954_03520 PF03099 Biotin/lipoate A/B protein ligase family OM954_03525 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family OM954_03525 PF04055 Radical SAM superfamily OM954_03530 PF11818 C-terminal domain of tail specific protease (DUF3340) OM954_03530 PF00595 PDZ domain OM954_03530 PF03572 Peptidase family S41 OM954_03530 PF17804 Tail specific protease N-terminal domain OM954_03540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_03540 PF03466 LysR substrate binding domain OM954_03550 PF01467 Cytidylyltransferase-like OM954_03550 PF00293 NUDIX domain OM954_03585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OM954_03585 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain OM954_03590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold OM954_03590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain OM954_03595 PF04972 BON domain OM954_03600 PF08446 PAS fold OM954_03600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_03600 PF00512 His Kinase A (phospho-acceptor) domain OM954_03600 PF00360 Phytochrome region OM954_03600 PF01590 GAF domain OM954_03605 PF00072 Response regulator receiver domain OM954_03610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_03610 PF00512 His Kinase A (phospho-acceptor) domain OM954_03615 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) OM954_03660 PF00263 Bacterial type II and III secretion system protein OM954_03660 PF03958 Bacterial type II/III secretion system short domain OM954_03665 PF00437 Type II/IV secretion system protein OM954_03670 PF00482 Type II secretion system (T2SS), protein F OM954_03675 PF07963 Prokaryotic N-terminal methylation motif OM954_03675 PF08334 Type II secretion system (T2SS), protein G OM954_03680 PF12019 Type II transport protein GspH OM954_03680 PF07963 Prokaryotic N-terminal methylation motif OM954_03685 PF07963 Prokaryotic N-terminal methylation motif OM954_03685 PF02501 Type II secretion system (T2SS), protein I OM954_03690 PF07963 Prokaryotic N-terminal methylation motif OM954_03690 PF11612 Type II secretion system (T2SS), protein J OM954_03695 PF03934 Type II secretion system (T2SS), protein K OM954_03715 PF00392 Bacterial regulatory proteins, gntR family OM954_03715 PF07702 UTRA domain OM954_03720 PF07690 Major Facilitator Superfamily OM954_03725 PF00356 Bacterial regulatory proteins, lacI family OM954_03730 PF01380 SIS domain OM954_03735 PF01979 Amidohydrolase family OM954_03745 PF01966 HD domain OM954_03745 PF12627 Probable RNA and SrmB- binding site of polymerase A OM954_03745 PF01743 Poly A polymerase head domain OM954_03750 PF01464 Transglycosylase SLT domain OM954_03750 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain OM954_03755 PF07715 TonB-dependent Receptor Plug Domain OM954_03755 PF00593 TonB dependent receptor OM954_03760 PF08264 Anticodon-binding domain of tRNA OM954_03760 PF00133 tRNA synthetases class I (I, L, M and V) OM954_03760 PF10458 Valyl tRNA synthetase tRNA binding arm OM954_03775 PF00883 Cytosol aminopeptidase family, catalytic domain OM954_03775 PF02789 Cytosol aminopeptidase family, N-terminal domain OM954_03785 PF03739 Lipopolysaccharide export system permease LptF/LptG OM954_03800 PF02899 Phage integrase, N-terminal SAM-like domain OM954_03800 PF00589 Phage integrase family OM954_03810 PF13098 Thioredoxin-like domain OM954_03810 PF10411 Disulfide bond isomerase protein N-terminus OM954_03815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain OM954_03815 PF02769 AIR synthase related protein, C-terminal domain OM954_03815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal OM954_03820 PF13018 Extended Signal Peptide of Type V secretion system OM954_03820 PF05662 Coiled stalk of trimeric autotransporter adhesin OM954_03820 PF05658 Head domain of trimeric autotransporter adhesin OM954_03820 PF03895 YadA-like membrane anchor domain OM954_03825 PF04151 Bacterial pre-peptidase C-terminal domain OM954_03825 PF00082 Subtilase family OM954_03830 PF13018 Extended Signal Peptide of Type V secretion system OM954_03830 PF03895 YadA-like membrane anchor domain OM954_03830 PF05658 Head domain of trimeric autotransporter adhesin OM954_03830 PF05662 Coiled stalk of trimeric autotransporter adhesin OM954_03835 PF00082 Subtilase family OM954_03835 PF04151 Bacterial pre-peptidase C-terminal domain OM954_03840 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OM954_03840 PF00437 Type II/IV secretion system protein OM954_03845 PF00482 Type II secretion system (T2SS), protein F OM954_03850 PF08334 Type II secretion system (T2SS), protein G OM954_03855 PF12019 Type II transport protein GspH OM954_03860 PF07963 Prokaryotic N-terminal methylation motif OM954_03870 PF03934 Type II secretion system (T2SS), protein K OM954_03875 PF05137 Fimbrial assembly protein (PilN) OM954_03880 PF10741 Type II secretion system (T2SS), protein M subtype b OM954_03890 PF00263 Bacterial type II and III secretion system protein OM954_03890 PF03958 Bacterial type II/III secretion system short domain OM954_03900 PF07702 UTRA domain OM954_03900 PF00392 Bacterial regulatory proteins, gntR family OM954_03910 PF07715 TonB-dependent Receptor Plug Domain OM954_03910 PF00593 TonB dependent receptor OM954_03970 PF00535 Glycosyl transferase family 2 OM954_03970 PF07238 PilZ domain OM954_03970 PF03552 Cellulose synthase OM954_03975 PF03170 Bacterial cellulose synthase subunit OM954_03980 PF01270 Glycosyl hydrolases family 8 OM954_04000 PF03960 ArsC family OM954_04005 PF01327 Polypeptide deformylase OM954_04010 PF12848 ABC transporter OM954_04010 PF00005 ABC transporter OM954_04020 PF00464 Serine hydroxymethyltransferase OM954_04025 PF03477 ATP cone domain OM954_04035 PF01872 RibD C-terminal domain OM954_04035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region OM954_04045 PF00677 Lumazine binding domain OM954_04050 PF00925 GTP cyclohydrolase II OM954_04050 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase OM954_04055 PF00885 6,7-dimethyl-8-ribityllumazine synthase OM954_04060 PF01029 NusB family OM954_04065 PF00586 AIR synthase related protein, N-terminal domain OM954_04065 PF02769 AIR synthase related protein, C-terminal domain OM954_04080 PF03814 Potassium-transporting ATPase A subunit OM954_04090 PF02669 K+-transporting ATPase, c chain OM954_04095 PF00512 His Kinase A (phospho-acceptor) domain OM954_04095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_04095 PF13493 Domain of unknown function (DUF4118) OM954_04095 PF13492 GAF domain OM954_04095 PF02702 Osmosensitive K+ channel His kinase sensor domain OM954_04100 PF00072 Response regulator receiver domain OM954_04100 PF00486 Transcriptional regulatory protein, C terminal OM954_04110 PF01565 FAD binding domain OM954_04110 PF02913 FAD linked oxidases, C-terminal domain OM954_04115 PF04307 LexA-binding, inner membrane-associated putative hydrolase OM954_04120 PF02021 Uncharacterised protein family UPF0102 OM954_04125 PF04348 LppC putative lipoprotein OM954_04130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OM954_04150 PF02381 MraZ protein, putative antitoxin-like OM954_04155 PF01795 MraW methylase family OM954_04160 PF04999 Cell division protein FtsL OM954_04165 PF03717 Penicillin-binding Protein dimerisation domain OM954_04165 PF00905 Penicillin binding protein transpeptidase domain OM954_04170 PF01225 Mur ligase family, catalytic domain OM954_04170 PF02875 Mur ligase family, glutamate ligase domain OM954_04170 PF08245 Mur ligase middle domain OM954_04175 PF01225 Mur ligase family, catalytic domain OM954_04175 PF02875 Mur ligase family, glutamate ligase domain OM954_04175 PF08245 Mur ligase middle domain OM954_04180 PF00953 Glycosyl transferase family 4 OM954_04185 PF01098 Cell cycle protein OM954_04190 PF04101 Glycosyltransferase family 28 C-terminal domain OM954_04190 PF03033 Glycosyltransferase family 28 N-terminal domain OM954_04195 PF08245 Mur ligase middle domain OM954_04195 PF02875 Mur ligase family, glutamate ligase domain OM954_04195 PF01225 Mur ligase family, catalytic domain OM954_04200 PF07478 D-ala D-ala ligase C-terminus OM954_04200 PF01820 D-ala D-ala ligase N-terminus OM954_04205 PF03799 Cell division protein FtsQ OM954_04205 PF08478 POTRA domain, FtsQ-type OM954_04210 PF02491 SHS2 domain inserted in FTSA OM954_04215 PF12327 FtsZ family, C-terminal domain OM954_04215 PF00091 Tubulin/FtsZ family, GTPase domain OM954_04220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase OM954_04230 PF01476 LysM domain OM954_04230 PF08525 Opacity-associated protein A N-terminal motif OM954_04230 PF01551 Peptidase family M23 OM954_04235 PF07516 SecA Wing and Scaffold domain OM954_04235 PF01043 SecA preprotein cross-linking domain OM954_04235 PF02810 SEC-C motif OM954_04235 PF07517 SecA DEAD-like domain OM954_04240 PF00293 NUDIX domain OM954_04250 PF02219 Methylenetetrahydrofolate reductase OM954_04260 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_04260 PF08240 Alcohol dehydrogenase GroES-like domain OM954_04260 PF00107 Zinc-binding dehydrogenase OM954_04260 PF16197 Ketoacyl-synthetase C-terminal extension OM954_04260 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_04260 PF00698 Acyl transferase domain OM954_04260 PF08659 KR domain OM954_04260 PF00550 Phosphopantetheine attachment site OM954_04260 PF14765 Polyketide synthase dehydratase OM954_04265 PF00082 Subtilase family OM954_04265 PF09286 Pro-kumamolisin, activation domain OM954_04270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold OM954_04275 PF00128 Alpha amylase, catalytic domain OM954_04300 PF00685 Sulfotransferase domain OM954_04310 PF13649 Methyltransferase domain OM954_04315 PF05221 S-adenosyl-L-homocysteine hydrolase OM954_04315 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain OM954_04325 PF00311 Phosphoenolpyruvate carboxylase OM954_04345 PF00691 OmpA family OM954_04345 PF01389 OmpA-like transmembrane domain OM954_04360 PF00328 Histidine phosphatase superfamily (branch 2) OM954_04365 PF00438 S-adenosylmethionine synthetase, N-terminal domain OM954_04365 PF02772 S-adenosylmethionine synthetase, central domain OM954_04365 PF02773 S-adenosylmethionine synthetase, C-terminal domain OM954_04375 PF13649 Methyltransferase domain OM954_04380 PF01207 Dihydrouridine synthase (Dus) OM954_04395 PF00294 pfkB family carbohydrate kinase OM954_04405 PF00248 Aldo/keto reductase family OM954_04415 PF07715 TonB-dependent Receptor Plug Domain OM954_04415 PF00593 TonB dependent receptor OM954_04435 PF00528 Binding-protein-dependent transport system inner membrane component OM954_04440 PF00005 ABC transporter OM954_04450 PF02668 Taurine catabolism dioxygenase TauD, TfdA family OM954_04460 PF00005 ABC transporter OM954_04465 PF13472 GDSL-like Lipase/Acylhydrolase family OM954_04470 PF00486 Transcriptional regulatory protein, C terminal OM954_04470 PF00072 Response regulator receiver domain OM954_04475 PF08521 Two-component sensor kinase N-terminal OM954_04475 PF00512 His Kinase A (phospho-acceptor) domain OM954_04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_04485 PF01219 Prokaryotic diacylglycerol kinase OM954_04495 PF04536 TPM domain OM954_04505 PF01790 Prolipoprotein diacylglyceryl transferase OM954_04510 PF00303 Thymidylate synthase OM954_04520 PF00186 Dihydrofolate reductase OM954_04525 PF00149 Calcineurin-like phosphoesterase OM954_04530 PF04379 ApaG domain OM954_04535 PF00398 Ribosomal RNA adenine dimethylase OM954_04540 PF04166 Pyridoxal phosphate biosynthetic protein PdxA OM954_04545 PF00639 PPIC-type PPIASE domain OM954_04545 PF09312 SurA N-terminal domain OM954_04550 PF04453 LPS transport system D OM954_04550 PF03968 OstA-like protein OM954_04560 PF00850 Histone deacetylase domain OM954_04565 PF01923 Cobalamin adenosyltransferase OM954_04575 PF01494 FAD binding domain OM954_04580 PF01494 FAD binding domain OM954_04600 PF07729 FCD domain OM954_04600 PF00392 Bacterial regulatory proteins, gntR family OM954_04605 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase OM954_04610 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase OM954_04610 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit OM954_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_04615 PF03466 LysR substrate binding domain OM954_04620 PF00501 AMP-binding enzyme OM954_04620 PF13193 AMP-binding enzyme C-terminal domain OM954_04630 PF00378 Enoyl-CoA hydratase/isomerase OM954_04650 PF08450 SMP-30/Gluconolactonase/LRE-like region OM954_04655 PF01408 Oxidoreductase family, NAD-binding Rossmann fold OM954_04655 PF02894 Oxidoreductase family, C-terminal alpha/beta domain OM954_04660 PF01728 FtsJ-like methyltransferase OM954_04660 PF18125 RlmM ferredoxin-like domain OM954_04685 PF00892 EamA-like transporter family OM954_04695 PF00749 tRNA synthetases class I (E and Q), catalytic domain OM954_04695 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain OM954_04710 PF00990 Diguanylate cyclase, GGDEF domain OM954_04710 PF00072 Response regulator receiver domain OM954_04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_04715 PF00512 His Kinase A (phospho-acceptor) domain OM954_04715 PF00672 HAMP domain OM954_04715 PF17149 Periplasmic sensor domain found in signal transduction proteins OM954_04715 PF00072 Response regulator receiver domain OM954_04715 PF01627 Hpt domain OM954_04720 PF00196 Bacterial regulatory proteins, luxR family OM954_04720 PF00072 Response regulator receiver domain OM954_04730 PF01625 Peptide methionine sulfoxide reductase OM954_04745 PF00923 Transaldolase/Fructose-6-phosphate aldolase OM954_04750 PF01272 Transcription elongation factor, GreA/GreB, C-term OM954_04750 PF14760 Rnk N-terminus OM954_04755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_04755 PF03466 LysR substrate binding domain OM954_04760 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_04760 PF13192 Thioredoxin domain OM954_04765 PF00578 AhpC/TSA family OM954_04765 PF10417 C-terminal domain of 1-Cys peroxiredoxin OM954_04770 PF05175 Methyltransferase small domain OM954_04770 PF17827 PrmC N-terminal domain OM954_04775 PF00561 alpha/beta hydrolase fold OM954_04785 PF00293 NUDIX domain OM954_04790 PF01367 5'-3' exonuclease, C-terminal SAM fold OM954_04790 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain OM954_04790 PF00476 DNA polymerase family A OM954_04790 PF01612 3'-5' exonuclease OM954_04845 PF01063 Amino-transferase class IV OM954_04850 PF00082 Subtilase family OM954_04850 PF04151 Bacterial pre-peptidase C-terminal domain OM954_04855 PF00082 Subtilase family OM954_04855 PF04151 Bacterial pre-peptidase C-terminal domain OM954_04860 PF00082 Subtilase family OM954_04860 PF04151 Bacterial pre-peptidase C-terminal domain OM954_04865 PF04073 Aminoacyl-tRNA editing domain OM954_04875 PF17189 Glycosyl hydrolase family 30 beta sandwich domain OM954_04875 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain OM954_04885 PF03358 NADPH-dependent FMN reductase OM954_04890 PF03631 Virulence factor BrkB OM954_04895 PF08534 Redoxin OM954_04900 PF00708 Acylphosphatase OM954_04910 PF03976 Polyphosphate kinase 2 (PPK2) OM954_04915 PF00994 Probable molybdopterin binding domain OM954_04925 PF00472 RF-1 domain OM954_04925 PF03462 PCRF domain OM954_04930 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain OM954_04930 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain OM954_04930 PF01488 Shikimate / quinate 5-dehydrogenase OM954_04940 PF03550 Outer membrane lipoprotein LolB OM954_04945 PF08544 GHMP kinases C terminal OM954_04945 PF00288 GHMP kinases N terminal domain OM954_04955 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase OM954_04955 PF14572 Phosphoribosyl synthetase-associated domain OM954_04960 PF01386 Ribosomal L25p family OM954_04960 PF14693 Ribosomal protein TL5, C-terminal domain OM954_04965 PF01195 Peptidyl-tRNA hydrolase OM954_04970 PF01926 50S ribosome-binding GTPase OM954_04970 PF06071 Protein of unknown function (DUF933) OM954_04990 PF00009 Elongation factor Tu GTP binding domain OM954_04990 PF03144 Elongation factor Tu domain 2 OM954_04990 PF03143 Elongation factor Tu C-terminal domain OM954_05000 PF00584 SecE/Sec61-gamma subunits of protein translocation complex OM954_05005 PF02357 Transcription termination factor nusG OM954_05005 PF00467 KOW motif OM954_05010 PF00298 Ribosomal protein L11, RNA binding domain OM954_05010 PF03946 Ribosomal protein L11, N-terminal domain OM954_05015 PF00687 Ribosomal protein L1p/L10e family OM954_05020 PF00466 Ribosomal protein L10 OM954_05025 PF16320 Ribosomal protein L7/L12 dimerisation domain OM954_05025 PF00542 Ribosomal protein L7/L12 C-terminal domain OM954_05030 PF04560 RNA polymerase Rpb2, domain 7 OM954_05030 PF04565 RNA polymerase Rpb2, domain 3 OM954_05030 PF04561 RNA polymerase Rpb2, domain 2 OM954_05030 PF04563 RNA polymerase beta subunit OM954_05030 PF10385 RNA polymerase beta subunit external 1 domain OM954_05030 PF00562 RNA polymerase Rpb2, domain 6 OM954_05035 PF04997 RNA polymerase Rpb1, domain 1 OM954_05035 PF00623 RNA polymerase Rpb1, domain 2 OM954_05035 PF04983 RNA polymerase Rpb1, domain 3 OM954_05035 PF05000 RNA polymerase Rpb1, domain 4 OM954_05035 PF04998 RNA polymerase Rpb1, domain 5 OM954_05040 PF00164 Ribosomal protein S12/S23 OM954_05045 PF00177 Ribosomal protein S7p/S5e OM954_05050 PF03144 Elongation factor Tu domain 2 OM954_05050 PF00009 Elongation factor Tu GTP binding domain OM954_05050 PF03764 Elongation factor G, domain IV OM954_05050 PF14492 Elongation Factor G, domain II OM954_05050 PF00679 Elongation factor G C-terminus OM954_05055 PF00009 Elongation factor Tu GTP binding domain OM954_05055 PF03143 Elongation factor Tu C-terminal domain OM954_05055 PF03144 Elongation factor Tu domain 2 OM954_05075 PF00872 Transposase, Mutator family OM954_05080 PF00338 Ribosomal protein S10p/S20e OM954_05085 PF00297 Ribosomal protein L3 OM954_05090 PF00573 Ribosomal protein L4/L1 family OM954_05095 PF00276 Ribosomal protein L23 OM954_05100 PF00181 Ribosomal Proteins L2, RNA binding domain OM954_05100 PF03947 Ribosomal Proteins L2, C-terminal domain OM954_05105 PF00203 Ribosomal protein S19 OM954_05110 PF00237 Ribosomal protein L22p/L17e OM954_05115 PF07650 KH domain OM954_05115 PF00189 Ribosomal protein S3, C-terminal domain OM954_05120 PF00252 Ribosomal protein L16p/L10e OM954_05125 PF00831 Ribosomal L29 protein OM954_05130 PF00366 Ribosomal protein S17 OM954_05135 PF00238 Ribosomal protein L14p/L23e OM954_05140 PF00467 KOW motif OM954_05140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 OM954_05145 PF00281 Ribosomal protein L5 OM954_05145 PF00673 ribosomal L5P family C-terminus OM954_05150 PF00253 Ribosomal protein S14p/S29e OM954_05155 PF00410 Ribosomal protein S8 OM954_05160 PF00347 Ribosomal protein L6 OM954_05165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast OM954_05170 PF00333 Ribosomal protein S5, N-terminal domain OM954_05170 PF03719 Ribosomal protein S5, C-terminal domain OM954_05175 PF00327 Ribosomal protein L30p/L7e OM954_05180 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A OM954_05185 PF00344 SecY translocase OM954_05190 PF00416 Ribosomal protein S13/S18 OM954_05195 PF00411 Ribosomal protein S11 OM954_05200 PF00163 Ribosomal protein S4/S9 N-terminal domain OM954_05200 PF01479 S4 domain OM954_05205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain OM954_05205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain OM954_05205 PF01000 RNA polymerase Rpb3/RpoA insert domain OM954_05210 PF01196 Ribosomal protein L17 OM954_05215 PF02600 Disulfide bond formation protein DsbB OM954_05235 PF01474 Class-II DAHP synthetase family OM954_05245 PF01425 Amidase OM954_05255 PF03144 Elongation factor Tu domain 2 OM954_05255 PF00679 Elongation factor G C-terminus OM954_05255 PF00009 Elongation factor Tu GTP binding domain OM954_05260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OM954_05265 PF00056 lactate/malate dehydrogenase, NAD binding domain OM954_05265 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain OM954_05270 PF02798 Glutathione S-transferase, N-terminal domain OM954_05270 PF00043 Glutathione S-transferase, C-terminal domain OM954_05285 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_05285 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OM954_05290 PF00107 Zinc-binding dehydrogenase OM954_05290 PF08240 Alcohol dehydrogenase GroES-like domain OM954_05295 PF00872 Transposase, Mutator family OM954_05300 PF01609 Transposase DDE domain OM954_05300 PF05598 Transposase domain (DUF772) OM954_05305 PF00223 Photosystem I psaA/psaB protein OM954_05305 PF00691 OmpA family OM954_05315 PF00849 RNA pseudouridylate synthase OM954_05325 PF00155 Aminotransferase class I and II OM954_05335 PF00528 Binding-protein-dependent transport system inner membrane component OM954_05340 PF00528 Binding-protein-dependent transport system inner membrane component OM954_05345 PF12857 TOBE-like domain OM954_05345 PF17850 CysA C-terminal regulatory domain OM954_05345 PF00005 ABC transporter OM954_05360 PF00872 Transposase, Mutator family OM954_05365 PF00107 Zinc-binding dehydrogenase OM954_05365 PF08240 Alcohol dehydrogenase GroES-like domain OM954_05375 PF04185 Phosphoesterase family OM954_05375 PF05506 Domain of unknown function (DUF756) OM954_05380 PF10459 Peptidase S46 OM954_05385 PF00300 Histidine phosphatase superfamily (branch 1) OM954_05395 PF08245 Mur ligase middle domain OM954_05395 PF02875 Mur ligase family, glutamate ligase domain OM954_05410 PF00156 Phosphoribosyl transferase domain OM954_05415 PF04305 Protein of unknown function (DUF455) OM954_05430 PF00149 Calcineurin-like phosphoesterase OM954_05435 PF01569 PAP2 superfamily OM954_05440 PF13439 Glycosyltransferase Family 4 OM954_05440 PF00534 Glycosyl transferases group 1 OM954_05445 PF02541 Ppx/GppA phosphatase family OM954_05450 PF17941 Polyphosphate kinase C-terminal domain 1 OM954_05450 PF13090 Polyphosphate kinase C-terminal domain 2 OM954_05450 PF13089 Polyphosphate kinase N-terminal domain OM954_05450 PF02503 Polyphosphate kinase middle domain OM954_05455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_05455 PF11808 Phosphate regulon sensor protein PhoR OM954_05455 PF00512 His Kinase A (phospho-acceptor) domain OM954_05455 PF00989 PAS fold OM954_05460 PF00486 Transcriptional regulatory protein, C terminal OM954_05460 PF00072 Response regulator receiver domain OM954_05465 PF01435 Peptidase family M48 OM954_05465 PF13181 Tetratricopeptide repeat OM954_05470 PF00462 Glutaredoxin OM954_05480 PF18324 Hypothetical protein TT1725 OM954_05480 PF00180 Isocitrate/isopropylmalate dehydrogenase OM954_05520 PF00872 Transposase, Mutator family OM954_05535 PF05698 Bacterial trigger factor protein (TF) C-terminus OM954_05535 PF05697 Bacterial trigger factor protein (TF) OM954_05540 PF00574 Clp protease OM954_05545 PF07724 AAA domain (Cdc48 subfamily) OM954_05545 PF10431 C-terminal, D2-small domain, of ClpB protein OM954_05545 PF06689 ClpX C4-type zinc finger OM954_05550 PF00004 ATPase family associated with various cellular activities (AAA) OM954_05550 PF05362 Lon protease (S16) C-terminal proteolytic domain OM954_05550 PF02190 ATP-dependent protease La (LON) substrate-binding domain OM954_05555 PF00216 Bacterial DNA-binding protein OM954_05580 PF05257 CHAP domain OM954_05580 PF01476 LysM domain OM954_05585 PF00753 Metallo-beta-lactamase superfamily OM954_05585 PF16123 Hydroxyacylglutathione hydrolase C-terminus OM954_05595 PF00075 RNase H OM954_05600 PF00929 Exonuclease OM954_05630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) OM954_05640 PF00753 Metallo-beta-lactamase superfamily OM954_05640 PF12706 Beta-lactamase superfamily domain OM954_05645 PF04055 Radical SAM superfamily OM954_05645 PF06463 Molybdenum Cofactor Synthesis C OM954_05655 PF01967 MoaC family OM954_05660 PF02597 ThiS family OM954_05665 PF02391 MoaE protein OM954_05680 PF12169 DNA polymerase III subunits gamma and tau domain III OM954_05680 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding OM954_05680 PF12170 DNA polymerase III tau subunit V interacting with alpha OM954_05685 PF02575 YbaB/EbfC DNA-binding family OM954_05690 PF02132 RecR protein OM954_05690 PF13662 Toprim domain OM954_05695 PF01230 HIT domain OM954_05705 PF13559 Domain of unknown function (DUF4129) OM954_05705 PF11992 Domain of unknown function (DUF3488) OM954_05705 PF01841 Transglutaminase-like superfamily OM954_05715 PF17863 AAA lid domain OM954_05715 PF07726 ATPase family associated with various cellular activities (AAA) OM954_05725 PF02545 Maf-like protein OM954_05730 PF02620 Large ribosomal RNA subunit accumulation protein YceD OM954_05735 PF01783 Ribosomal L32p protein family OM954_05740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OM954_05740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OM954_05750 PF00698 Acyl transferase domain OM954_05760 PF00550 Phosphopantetheine attachment site OM954_05765 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_05765 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_05770 PF00425 chorismate binding enzyme OM954_05770 PF04715 Anthranilate synthase component I, N terminal region OM954_05775 PF02618 YceG-like family OM954_05780 PF09115 DNA polymerase III, delta subunit, C terminal OM954_05805 PF02954 Bacterial regulatory protein, Fis family OM954_05805 PF06506 Propionate catabolism activator OM954_05805 PF00158 Sigma-54 interaction domain OM954_05815 PF00285 Citrate synthase, C-terminal domain OM954_05820 PF00330 Aconitase family (aconitate hydratase) OM954_05820 PF00694 Aconitase C-terminal domain OM954_05830 PF04303 PrpF protein OM954_05835 PF07715 TonB-dependent Receptor Plug Domain OM954_05835 PF00593 TonB dependent receptor OM954_05850 PF00207 Alpha-2-macroglobulin family OM954_05850 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain OM954_05850 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain OM954_05850 PF11974 Bacterial alpha-2-macroglobulin MG3 domain OM954_05850 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain OM954_05850 PF17962 Bacterial macroglobulin domain 6 OM954_05850 PF01835 MG2 domain OM954_05850 PF07703 Alpha-2-macroglobulin bait region domain OM954_05870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_05870 PF00512 His Kinase A (phospho-acceptor) domain OM954_05870 PF00989 PAS fold OM954_05875 PF00912 Transglycosylase OM954_05875 PF06832 Penicillin-Binding Protein C-terminus Family OM954_05875 PF00905 Penicillin binding protein transpeptidase domain OM954_05885 PF08534 Redoxin OM954_05895 PF01556 DnaJ C terminal domain OM954_05895 PF00226 DnaJ domain OM954_05900 PF00072 Response regulator receiver domain OM954_05905 PF01145 SPFH domain / Band 7 family OM954_05905 PF12221 Bacterial membrane protein N terminal OM954_05910 PF01145 SPFH domain / Band 7 family OM954_05920 PF00709 Adenylosuccinate synthetase OM954_05925 PF11838 ERAP1-like C-terminal domain OM954_05925 PF01433 Peptidase family M1 domain OM954_05940 PF00440 Bacterial regulatory proteins, tetR family OM954_05960 PF00872 Transposase, Mutator family OM954_05990 PF01256 Carbohydrate kinase OM954_06000 PF00723 Glycosyl hydrolases family 15 OM954_06010 PF17678 Glycosyl hydrolase family 92 N-terminal domain OM954_06010 PF07971 Glycosyl hydrolase family 92 OM954_06035 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_06055 PF17755 UvrA DNA-binding domain OM954_06065 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain OM954_06065 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase OM954_06070 PF03450 CO dehydrogenase flavoprotein C-terminal domain OM954_06070 PF00941 FAD binding domain in molybdopterin dehydrogenase OM954_06075 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_06075 PF01799 [2Fe-2S] binding domain OM954_06110 PF00717 Peptidase S24-like OM954_06110 PF01726 LexA DNA binding domain OM954_06125 PF07733 Bacterial DNA polymerase III alpha NTPase domain OM954_06125 PF17657 Bacterial DNA polymerase III alpha subunit finger domain OM954_06125 PF14579 Helix-hairpin-helix motif OM954_06125 PF02811 PHP domain OM954_06135 PF00326 Prolyl oligopeptidase family OM954_06145 PF03169 OPT oligopeptide transporter protein OM954_06170 PF00326 Prolyl oligopeptidase family OM954_06170 PF07676 WD40-like Beta Propeller Repeat OM954_06170 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region OM954_06205 PF02311 AraC-like ligand binding domain OM954_06205 PF12833 Helix-turn-helix domain OM954_06215 PF00872 Transposase, Mutator family OM954_06225 PF00199 Catalase OM954_06225 PF06628 Catalase-related immune-responsive OM954_06225 PF18011 C-terminal domain found in long catalases OM954_06230 PF00248 Aldo/keto reductase family OM954_06235 PF00135 Carboxylesterase family OM954_06240 PF02347 Glycine cleavage system P-protein OM954_06260 PF03412 Peptidase C39 family OM954_06260 PF00005 ABC transporter OM954_06260 PF00664 ABC transporter transmembrane region OM954_06265 PF07690 Major Facilitator Superfamily OM954_06285 PF00872 Transposase, Mutator family OM954_06305 PF00884 Sulfatase OM954_06305 PF08019 Phosphoethanolamine transferase EptA/EptB OM954_06320 PF00072 Response regulator receiver domain OM954_06320 PF00486 Transcriptional regulatory protein, C terminal OM954_06325 PF08521 Two-component sensor kinase N-terminal OM954_06325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06325 PF00512 His Kinase A (phospho-acceptor) domain OM954_06335 PF03776 Septum formation topological specificity factor MinE OM954_06340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain OM954_06345 PF03775 Septum formation inhibitor MinC, C-terminal domain OM954_06345 PF05209 Septum formation inhibitor MinC, N-terminal domain OM954_06355 PF07730 Histidine kinase OM954_06360 PF00072 Response regulator receiver domain OM954_06360 PF00196 Bacterial regulatory proteins, luxR family OM954_06375 PF00730 HhH-GPD superfamily base excision DNA repair protein OM954_06400 PF02222 ATP-grasp domain OM954_06410 PF04377 Arginine-tRNA-protein transferase, C terminus OM954_06410 PF04376 Arginine-tRNA-protein transferase, N terminus OM954_06425 PF04542 Sigma-70 region 2 OM954_06425 PF08281 Sigma-70, region 4 OM954_06440 PF00378 Enoyl-CoA hydratase/isomerase OM954_06455 PF17760 UvrA interaction domain OM954_06455 PF17755 UvrA DNA-binding domain OM954_06455 PF00005 ABC transporter OM954_06460 PF00829 Ribosomal prokaryotic L21 protein OM954_06465 PF01016 Ribosomal L27 protein OM954_06470 PF01926 50S ribosome-binding GTPase OM954_06470 PF01018 GTP1/OBG OM954_06475 PF01649 Ribosomal protein S20 OM954_06480 PF03023 Lipid II flippase MurJ OM954_06485 PF01687 Riboflavin kinase OM954_06485 PF06574 FAD synthetase OM954_06490 PF06827 Zinc finger found in FPG and IleRS OM954_06490 PF00133 tRNA synthetases class I (I, L, M and V) OM954_06490 PF08264 Anticodon-binding domain of tRNA OM954_06495 PF01252 Signal peptidase (SPase) II OM954_06500 PF02401 LytB protein OM954_06510 PF06481 COX Aromatic Rich Motif OM954_06510 PF00116 Cytochrome C oxidase subunit II, periplasmic domain OM954_06515 PF00115 Cytochrome C and Quinol oxidase polypeptide I OM954_06520 PF00510 Cytochrome c oxidase subunit III OM954_06525 PF03626 Prokaryotic Cytochrome C oxidase subunit IV OM954_06540 PF05656 Protein of unknown function (DUF805) OM954_06550 PF12833 Helix-turn-helix domain OM954_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06555 PF00183 Hsp90 protein OM954_06565 PF08678 Rsbr N terminal OM954_06565 PF01740 STAS domain OM954_06570 PF01740 STAS domain OM954_06585 PF00672 HAMP domain OM954_06585 PF17149 Periplasmic sensor domain found in signal transduction proteins OM954_06585 PF00072 Response regulator receiver domain OM954_06585 PF01627 Hpt domain OM954_06585 PF00512 His Kinase A (phospho-acceptor) domain OM954_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06590 PF00072 Response regulator receiver domain OM954_06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06590 PF00512 His Kinase A (phospho-acceptor) domain OM954_06590 PF08448 PAS fold OM954_06590 PF13188 PAS domain OM954_06595 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain OM954_06595 PF04616 Glycosyl hydrolases family 43 OM954_06600 PF07715 TonB-dependent Receptor Plug Domain OM954_06600 PF00593 TonB dependent receptor OM954_06605 PF00085 Thioredoxin OM954_06610 PF07237 Protein of unknown function (DUF1428) OM954_06615 PF13493 Domain of unknown function (DUF4118) OM954_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06615 PF02702 Osmosensitive K+ channel His kinase sensor domain OM954_06615 PF00512 His Kinase A (phospho-acceptor) domain OM954_06615 PF13492 GAF domain OM954_06620 PF01339 CheB methylesterase OM954_06625 PF03705 CheR methyltransferase, all-alpha domain OM954_06625 PF01739 CheR methyltransferase, SAM binding domain OM954_06630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) OM954_06630 PF00512 His Kinase A (phospho-acceptor) domain OM954_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06630 PF00672 HAMP domain OM954_06630 PF01627 Hpt domain OM954_06630 PF00072 Response regulator receiver domain OM954_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_06635 PF00072 Response regulator receiver domain OM954_06635 PF13426 PAS domain OM954_06640 PF00072 Response regulator receiver domain OM954_06645 PF06964 Alpha-L-arabinofuranosidase C-terminal domain OM954_06650 PF01263 Aldose 1-epimerase OM954_06655 PF01578 Cytochrome C assembly protein OM954_06660 PF00448 SRP54-type protein, GTPase domain OM954_06660 PF02881 SRP54-type protein, helical bundle domain OM954_06660 PF02978 Signal peptide binding domain OM954_06665 PF03060 Nitronate monooxygenase OM954_06670 PF01063 Amino-transferase class IV OM954_06675 PF00886 Ribosomal protein S16 OM954_06680 PF01782 RimM N-terminal domain OM954_06680 PF05239 PRC-barrel domain OM954_06685 PF01746 tRNA (Guanine-1)-methyltransferase OM954_06690 PF01245 Ribosomal protein L19 OM954_06695 PF01554 MatE OM954_06715 PF01479 S4 domain OM954_06720 PF00141 Peroxidase OM954_06730 PF01624 MutS domain I OM954_06730 PF05188 MutS domain II OM954_06730 PF05192 MutS domain III OM954_06730 PF05190 MutS family domain IV OM954_06730 PF00488 MutS domain V OM954_06735 PF13276 HTH-like domain OM954_06735 PF00665 Integrase core domain OM954_06735 PF13333 Integrase core domain OM954_06785 PF02837 Glycosyl hydrolases family 2, sugar binding domain OM954_06785 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 OM954_06785 PF00703 Glycosyl hydrolases family 2 OM954_06785 PF02836 Glycosyl hydrolases family 2, TIM barrel domain OM954_06785 PF16355 Domain of unknown function (DUF4982) OM954_06790 PF07745 Glycosyl hydrolase family 53 OM954_06800 PF01381 Helix-turn-helix OM954_06800 PF06114 IrrE N-terminal-like domain OM954_06800 PF09856 Predicted transcriptional regulator (DUF2083) OM954_06805 PF00171 Aldehyde dehydrogenase family OM954_06810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_06810 PF02770 Acyl-CoA dehydrogenase, middle domain OM954_06810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_06815 PF00378 Enoyl-CoA hydratase/isomerase OM954_06820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OM954_06820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OM954_06820 PF00378 Enoyl-CoA hydratase/isomerase OM954_06825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OM954_06825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OM954_06830 PF01545 Cation efflux family OM954_06840 PF13181 Tetratricopeptide repeat OM954_06850 PF13181 Tetratricopeptide repeat OM954_06855 PF00593 TonB dependent receptor OM954_06855 PF07715 TonB-dependent Receptor Plug Domain OM954_06860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OM954_06860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OM954_06860 PF00378 Enoyl-CoA hydratase/isomerase OM954_06865 PF04542 Sigma-70 region 2 OM954_06865 PF08281 Sigma-70, region 4 OM954_06875 PF13180 PDZ domain OM954_06880 PF00679 Elongation factor G C-terminus OM954_06880 PF00009 Elongation factor Tu GTP binding domain OM954_06880 PF03144 Elongation factor Tu domain 2 OM954_06880 PF06421 GTP-binding protein LepA C-terminus OM954_06885 PF10502 Signal peptidase, peptidase S26 OM954_06895 PF00035 Double-stranded RNA binding motif OM954_06895 PF14622 Ribonuclease-III-like OM954_06900 PF07650 KH domain OM954_06900 PF01926 50S ribosome-binding GTPase OM954_06905 PF11967 Recombination protein O N terminal OM954_06905 PF02565 Recombination protein O C terminal OM954_06915 PF05958 tRNA (Uracil-5-)-methyltransferase OM954_06920 PF01928 CYTH domain OM954_06925 PF01323 DSBA-like thioredoxin domain OM954_06930 PF01593 Flavin containing amine oxidoreductase OM954_06935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein OM954_06940 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_06945 PF00156 Phosphoribosyl transferase domain OM954_06950 PF01048 Phosphorylase superfamily OM954_06955 PF00313 'Cold-shock' DNA-binding domain OM954_06960 PF01494 FAD binding domain OM954_06970 PF08494 DEAD/H associated OM954_06970 PF00271 Helicase conserved C-terminal domain OM954_06970 PF00270 DEAD/DEAH box helicase OM954_06975 PF01068 ATP dependent DNA ligase domain OM954_06975 PF04675 DNA ligase N terminus OM954_06975 PF04679 ATP dependent DNA ligase C terminal region OM954_06985 PF04679 ATP dependent DNA ligase C terminal region OM954_06985 PF01068 ATP dependent DNA ligase domain OM954_06985 PF04675 DNA ligase N terminus OM954_07005 PF00072 Response regulator receiver domain OM954_07005 PF00990 Diguanylate cyclase, GGDEF domain OM954_07020 PF00108 Thiolase, N-terminal domain OM954_07020 PF02803 Thiolase, C-terminal domain OM954_07025 PF03797 Autotransporter beta-domain OM954_07025 PF12951 Passenger-associated-transport-repeat OM954_07025 PF00082 Subtilase family OM954_07030 PF03797 Autotransporter beta-domain OM954_07030 PF12951 Passenger-associated-transport-repeat OM954_07030 PF00082 Subtilase family OM954_07035 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase OM954_07035 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain OM954_07045 PF01863 Protein of unknown function DUF45 OM954_07050 PF07043 Protein of unknown function (DUF1328) OM954_07060 PF01258 Prokaryotic dksA/traR C4-type zinc finger OM954_07080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OM954_07090 PF03831 PhnA domain OM954_07090 PF08274 PhnA Zinc-Ribbon OM954_07100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OM954_07105 PF07690 Major Facilitator Superfamily OM954_07140 PF03706 Lysylphosphatidylglycerol synthase TM region OM954_07140 PF09924 Uncharacterised conserved protein (DUF2156) OM954_07150 PF01042 Endoribonuclease L-PSP OM954_07195 PF04542 Sigma-70 region 2 OM954_07195 PF04545 Sigma-70, region 4 OM954_07210 PF04060 Putative Fe-S cluster OM954_07220 PF09334 tRNA synthetases class I (M) OM954_07220 PF01588 Putative tRNA binding domain OM954_07240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OM954_07255 PF00324 Amino acid permease OM954_07260 PF02574 Homocysteine S-methyltransferase OM954_07270 PF02592 Putative vitamin uptake transporter OM954_07290 PF03551 Transcriptional regulator PadR-like family OM954_07310 PF03653 Uncharacterised protein family (UPF0093) OM954_07325 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit OM954_07330 PF07733 Bacterial DNA polymerase III alpha NTPase domain OM954_07330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain OM954_07330 PF14579 Helix-hairpin-helix motif OM954_07330 PF02811 PHP domain OM954_07330 PF01336 OB-fold nucleic acid binding domain OM954_07335 PF01351 Ribonuclease HII OM954_07340 PF02684 Lipid-A-disaccharide synthetase OM954_07345 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 OM954_07345 PF00132 Bacterial transferase hexapeptide (six repeats) OM954_07350 PF07977 FabA-like domain OM954_07355 PF00132 Bacterial transferase hexapeptide (six repeats) OM954_07355 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD OM954_07365 PF07244 Surface antigen variable number repeat OM954_07365 PF01103 Surface antigen OM954_07370 PF02163 Peptidase family M50 OM954_07370 PF17820 PDZ domain OM954_07375 PF13288 DXP reductoisomerase C-terminal domain OM954_07375 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain OM954_07375 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase OM954_07385 PF01255 Putative undecaprenyl diphosphate synthase OM954_07390 PF01765 Ribosome recycling factor OM954_07395 PF00696 Amino acid kinase family OM954_07400 PF00072 Response regulator receiver domain OM954_07400 PF00990 Diguanylate cyclase, GGDEF domain OM954_07405 PF00889 Elongation factor TS OM954_07410 PF00318 Ribosomal protein S2 OM954_07445 PF00557 Metallopeptidase family M24 OM954_07455 PF14602 Hexapeptide repeat of succinyl-transferase OM954_07455 PF00132 Bacterial transferase hexapeptide (six repeats) OM954_07455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal OM954_07460 PF03960 ArsC family OM954_07465 PF07687 Peptidase dimerisation domain OM954_07465 PF01546 Peptidase family M20/M25/M40 OM954_07475 PF00733 Asparagine synthase OM954_07475 PF13537 Glutamine amidotransferase domain OM954_07485 PF07715 TonB-dependent Receptor Plug Domain OM954_07485 PF00593 TonB dependent receptor OM954_07490 PF01804 Penicillin amidase OM954_07495 PF00210 Ferritin-like domain OM954_07515 PF00521 DNA gyrase/topoisomerase IV, subunit A OM954_07515 PF03989 DNA gyrase C-terminal domain, beta-propeller OM954_07540 PF00665 Integrase core domain OM954_07540 PF13333 Integrase core domain OM954_07540 PF13276 HTH-like domain OM954_07545 PF00872 Transposase, Mutator family OM954_07575 PF02321 Outer membrane efflux protein OM954_07580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_07580 PF00529 HlyD membrane-fusion protein of T1SS OM954_07585 PF07690 Major Facilitator Superfamily OM954_07605 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_07605 PF01915 Glycosyl hydrolase family 3 C-terminal domain OM954_07605 PF14310 Fibronectin type III-like domain OM954_07615 PF00854 POT family OM954_07640 PF12802 MarR family OM954_07645 PF01432 Peptidase family M3 OM954_07650 PF00255 Glutathione peroxidase OM954_07655 PF00175 Oxidoreductase NAD-binding domain OM954_07655 PF00970 Oxidoreductase FAD-binding domain OM954_07660 PF00005 ABC transporter OM954_07665 PF05681 Fumarate hydratase (Fumerase) OM954_07665 PF05683 Fumarase C-terminus OM954_07680 PF00484 Carbonic anhydrase OM954_07685 PF02253 Phospholipase A1 OM954_07695 PF00313 'Cold-shock' DNA-binding domain OM954_07710 PF00899 ThiF family OM954_07715 PF01026 TatD related DNase OM954_07730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_07730 PF02770 Acyl-CoA dehydrogenase, middle domain OM954_07730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_07740 PF13417 Glutathione S-transferase, N-terminal domain OM954_07745 PF00733 Asparagine synthase OM954_07745 PF13537 Glutamine amidotransferase domain OM954_07750 PF03358 NADPH-dependent FMN reductase OM954_07755 PF00772 DnaB-like helicase N terminal domain OM954_07755 PF03796 DnaB-like helicase C terminal domain OM954_07760 PF03441 FAD binding domain of DNA photolyase OM954_07760 PF00875 DNA photolyase OM954_07765 PF00691 OmpA family OM954_07765 PF05736 OprF membrane domain OM954_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_07775 PF03466 LysR substrate binding domain OM954_07790 PF00529 HlyD membrane-fusion protein of T1SS OM954_07790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_07795 PF00873 AcrB/AcrD/AcrF family OM954_07800 PF00106 short chain dehydrogenase OM954_07805 PF02321 Outer membrane efflux protein OM954_07810 PF00990 Diguanylate cyclase, GGDEF domain OM954_07820 PF00990 Diguanylate cyclase, GGDEF domain OM954_07845 PF01668 SmpB protein OM954_07850 PF03364 Polyketide cyclase / dehydrase and lipid transport OM954_07855 PF03658 RnfH family Ubiquitin OM954_07860 PF04355 SmpA / OmlA family OM954_07865 PF01475 Ferric uptake regulator family OM954_07870 PF02463 RecF/RecN/SMC N terminal domain OM954_07875 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding OM954_07875 PF01628 HrcA protein C terminal domain OM954_07880 PF01025 GrpE OM954_07885 PF00012 Hsp70 protein OM954_07890 PF00226 DnaJ domain OM954_07890 PF01556 DnaJ C terminal domain OM954_07890 PF00684 DnaJ central domain OM954_07895 PF08543 Phosphomethylpyrimidine kinase OM954_07920 PF03412 Peptidase C39 family OM954_07920 PF00005 ABC transporter OM954_07920 PF00664 ABC transporter transmembrane region OM954_07925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_07925 PF03466 LysR substrate binding domain OM954_07930 PF00664 ABC transporter transmembrane region OM954_07930 PF00005 ABC transporter OM954_07935 PF01205 Uncharacterized protein family UPF0029 OM954_07940 PF03641 Possible lysine decarboxylase OM954_07945 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_07945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OM954_07950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OM954_07950 PF00364 Biotin-requiring enzyme OM954_07950 PF02817 e3 binding domain OM954_07955 PF16078 2-oxoglutarate dehydrogenase N-terminus OM954_07955 PF00676 Dehydrogenase E1 component OM954_07955 PF16870 2-oxoglutarate dehydrogenase C-terminal OM954_07955 PF02779 Transketolase, pyrimidine binding domain OM954_07965 PF08007 Cupin superfamily protein OM954_07975 PF08328 Adenylosuccinate lyase C-terminal OM954_07975 PF00206 Lyase OM954_07985 PF00571 CBS domain OM954_07985 PF03471 Transporter associated domain OM954_07985 PF01595 Cyclin M transmembrane N-terminal domain OM954_07990 PF00206 Lyase OM954_07990 PF10415 Fumarase C C-terminus OM954_08015 PF00005 ABC transporter OM954_08020 PF00392 Bacterial regulatory proteins, gntR family OM954_08030 PF00255 Glutathione peroxidase OM954_08035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OM954_08035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase OM954_08045 PF04102 SlyX OM954_08065 PF00356 Bacterial regulatory proteins, lacI family OM954_08070 PF07690 Major Facilitator Superfamily OM954_08075 PF00294 pfkB family carbohydrate kinase OM954_08085 PF02574 Homocysteine S-methyltransferase OM954_08085 PF02310 B12 binding domain OM954_08085 PF02607 B12 binding domain OM954_08085 PF02965 Vitamin B12 dependent methionine synthase, activation domain OM954_08085 PF00809 Pterin binding enzyme OM954_08090 PF00809 Pterin binding enzyme OM954_08090 PF02574 Homocysteine S-methyltransferase OM954_08095 PF01209 ubiE/COQ5 methyltransferase family OM954_08100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_08100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_08100 PF02770 Acyl-CoA dehydrogenase, middle domain OM954_08120 PF00773 RNB domain OM954_08120 PF17876 Cold shock domain OM954_08120 PF08461 Ribonuclease R winged-helix domain OM954_08120 PF08206 Ribonuclease B OB domain OM954_08120 PF00575 S1 RNA binding domain OM954_08130 PF08032 RNA 2'-O ribose methyltransferase substrate binding OM954_08130 PF00588 SpoU rRNA Methylase family OM954_08140 PF00929 Exonuclease OM954_08150 PF01895 PhoU domain OM954_08155 PF00005 ABC transporter OM954_08160 PF00528 Binding-protein-dependent transport system inner membrane component OM954_08165 PF00528 Binding-protein-dependent transport system inner membrane component OM954_08170 PF12849 PBP superfamily domain OM954_08175 PF12849 PBP superfamily domain OM954_08190 PF00484 Carbonic anhydrase OM954_08195 PF01740 STAS domain OM954_08195 PF00916 Sulfate permease family OM954_08200 PF10576 Iron-sulfur binding domain of endonuclease III OM954_08200 PF00633 Helix-hairpin-helix motif OM954_08200 PF00730 HhH-GPD superfamily base excision DNA repair protein OM954_08210 PF00378 Enoyl-CoA hydratase/isomerase OM954_08215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OM954_08215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase OM954_08220 PF00293 NUDIX domain OM954_08225 PF00581 Rhodanese-like domain OM954_08255 PF00005 ABC transporter OM954_08255 PF16326 ABC transporter C-terminal domain OM954_08255 PF12848 ABC transporter OM954_08265 PF10672 S-adenosylmethionine-dependent methyltransferase OM954_08265 PF02926 THUMP domain OM954_08265 PF01170 Putative RNA methylase family UPF0020 OM954_08270 PF01513 ATP-NAD kinase OM954_08290 PF00929 Exonuclease OM954_08290 PF08411 Exonuclease C-terminal OM954_08300 PF01494 FAD binding domain OM954_08305 PF00266 Aminotransferase class-V OM954_08315 PF06052 3-hydroxyanthranilic acid dioxygenase OM954_08320 PF00484 Carbonic anhydrase OM954_08365 PF00072 Response regulator receiver domain OM954_08365 PF00196 Bacterial regulatory proteins, luxR family OM954_08400 PF01336 OB-fold nucleic acid binding domain OM954_08400 PF00152 tRNA synthetases class II (D, K and N) OM954_08405 PF01521 Iron-sulphur cluster biosynthesis OM954_08410 PF01250 Ribosomal protein S6 OM954_08415 PF01084 Ribosomal protein S18 OM954_08420 PF01281 Ribosomal protein L9, N-terminal domain OM954_08420 PF03948 Ribosomal protein L9, C-terminal domain OM954_08425 PF02463 RecF/RecN/SMC N terminal domain OM954_08430 PF04354 ZipA, C-terminal FtsZ-binding domain OM954_08440 PF00155 Aminotransferase class I and II OM954_08445 PF01653 NAD-dependent DNA ligase adenylation domain OM954_08445 PF12826 Helix-hairpin-helix motif OM954_08445 PF03119 NAD-dependent DNA ligase C4 zinc finger domain OM954_08445 PF03120 NAD-dependent DNA ligase OB-fold domain OM954_08445 PF00533 BRCA1 C Terminus (BRCT) domain OM954_08450 PF00152 tRNA synthetases class II (D, K and N) OM954_08460 PF01008 Initiation factor 2 subunit family OM954_08465 PF03989 DNA gyrase C-terminal domain, beta-propeller OM954_08465 PF00521 DNA gyrase/topoisomerase IV, subunit A OM954_08470 PF13360 PQQ-like domain OM954_08480 PF01175 Urocanase Rossmann-like domain OM954_08480 PF17391 Urocanase N-terminal domain OM954_08480 PF17392 Urocanase C-terminal domain OM954_08490 PF00221 Aromatic amino acid lyase OM954_08495 PF07969 Amidohydrolase family OM954_08510 PF00392 Bacterial regulatory proteins, gntR family OM954_08510 PF07702 UTRA domain OM954_08535 PF01794 Ferric reductase like transmembrane component OM954_08540 PF00174 Oxidoreductase molybdopterin binding domain OM954_08545 PF00266 Aminotransferase class-V OM954_08550 PF00800 Prephenate dehydratase OM954_08550 PF01842 ACT domain OM954_08550 PF01817 Chorismate mutase type II OM954_08555 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) OM954_08565 PF03544 Gram-negative bacterial TonB protein C-terminal OM954_08570 PF02403 Seryl-tRNA synthetase N-terminal domain OM954_08570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OM954_08575 PF02525 Flavodoxin-like fold OM954_08580 PF03466 LysR substrate binding domain OM954_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_08605 PF00672 HAMP domain OM954_08605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_08605 PF02203 Tar ligand binding domain homologue OM954_08610 PF01494 FAD binding domain OM954_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_08625 PF13426 PAS domain OM954_08625 PF00072 Response regulator receiver domain OM954_08630 PF06745 KaiC OM954_08635 PF00512 His Kinase A (phospho-acceptor) domain OM954_08635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_08635 PF13188 PAS domain OM954_08635 PF08448 PAS fold OM954_08635 PF00072 Response regulator receiver domain OM954_08645 PF03918 Cytochrome C biogenesis protein OM954_08650 PF08534 Redoxin OM954_08655 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal OM954_08655 PF01578 Cytochrome C assembly protein OM954_08660 PF03100 CcmE OM954_08665 PF04995 Heme exporter protein D (CcmD) OM954_08670 PF01578 Cytochrome C assembly protein OM954_08675 PF00082 Subtilase family OM954_08685 PF08281 Sigma-70, region 4 OM954_08685 PF04542 Sigma-70 region 2 OM954_08695 PF00034 Cytochrome c OM954_08710 PF05523 WxcM-like, C-terminal OM954_08730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family OM954_08735 PF01943 Polysaccharide biosynthesis protein OM954_08740 PF00535 Glycosyl transferase family 2 OM954_08755 PF08241 Methyltransferase domain OM954_08790 PF00005 ABC transporter OM954_08795 PF00664 ABC transporter transmembrane region OM954_08795 PF00005 ABC transporter OM954_08800 PF07690 Major Facilitator Superfamily OM954_08805 PF00296 Luciferase-like monooxygenase OM954_08820 PF00571 CBS domain OM954_08820 PF03471 Transporter associated domain OM954_08820 PF01595 Cyclin M transmembrane N-terminal domain OM954_08830 PF01384 Phosphate transporter family OM954_08845 PF00204 DNA gyrase B OM954_08845 PF00986 DNA gyrase B subunit, carboxyl terminus OM954_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_08845 PF01751 Toprim domain OM954_08855 PF06418 CTP synthase N-terminus OM954_08855 PF00117 Glutamine amidotransferase class-I OM954_08860 PF00793 DAHP synthetase I family OM954_08870 PF00113 Enolase, C-terminal TIM barrel domain OM954_08870 PF03952 Enolase, N-terminal domain OM954_08875 PF04977 Septum formation initiator OM954_08880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OM954_08885 PF02542 YgbB family OM954_08890 PF01142 tRNA pseudouridine synthase D (TruD) OM954_08895 PF01713 Smr domain OM954_08900 PF01975 Survival protein SurE OM954_08910 PF09335 SNARE associated Golgi protein OM954_08915 PF01551 Peptidase family M23 OM954_08915 PF01476 LysM domain OM954_08920 PF04430 Protein of unknown function (DUF498/DUF598) OM954_08925 PF01985 CRS1 / YhbY (CRM) domain OM954_08930 PF01728 FtsJ-like methyltransferase OM954_08935 PF00004 ATPase family associated with various cellular activities (AAA) OM954_08935 PF17862 AAA+ lid domain OM954_08935 PF06480 FtsH Extracellular OM954_08935 PF01434 Peptidase family M41 OM954_08940 PF00809 Pterin binding enzyme OM954_08950 PF17209 Hfq protein OM954_08955 PF16360 GTP-binding GTPase Middle Region OM954_08955 PF01926 50S ribosome-binding GTPase OM954_08955 PF13167 GTP-binding GTPase N-terminal OM954_08960 PF02464 Competence-damaged protein OM954_08965 PF03109 ABC1 family OM954_08970 PF01726 LexA DNA binding domain OM954_08970 PF00717 Peptidase S24-like OM954_08975 PF00154 recA bacterial DNA recombination protein OM954_08980 PF02631 RecX family OM954_08985 PF02272 DHHA1 domain OM954_08985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain OM954_08985 PF01411 tRNA synthetases class II (A) OM954_08990 PF02599 Global regulator protein family OM954_09000 PF08447 PAS fold OM954_09000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_09000 PF13426 PAS domain OM954_09010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_09010 PF03466 LysR substrate binding domain OM954_09035 PF08543 Phosphomethylpyrimidine kinase OM954_09050 PF02562 PhoH-like protein OM954_09050 PF13638 PIN domain OM954_09055 PF00578 AhpC/TSA family OM954_09070 PF00701 Dihydrodipicolinate synthetase family OM954_09080 PF11953 Domain of unknown function (DUF3470) OM954_09080 PF00037 4Fe-4S binding domain OM954_09085 PF05035 2-keto-3-deoxy-galactonokinase OM954_09090 PF08450 SMP-30/Gluconolactonase/LRE-like region OM954_09095 PF13378 Enolase C-terminal domain-like OM954_09095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain OM954_09100 PF01081 KDPG and KHG aldolase OM954_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_09105 PF03466 LysR substrate binding domain OM954_09120 PF00942 Cellulose binding domain OM954_09120 PF03442 Carbohydrate binding domain X2 OM954_09135 PF16338 Domain of unknown function (DUF4968) OM954_09135 PF17137 Domain of unknown function (DUF5110) OM954_09135 PF01055 Glycosyl hydrolases family 31 OM954_09145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain OM954_09145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain OM954_09155 PF00083 Sugar (and other) transporter OM954_09170 PF01520 N-acetylmuramoyl-L-alanine amidase OM954_09175 PF02649 Type I GTP cyclohydrolase folE2 OM954_09190 PF01743 Poly A polymerase head domain OM954_09190 PF12626 Polymerase A arginine-rich C-terminus OM954_09190 PF12627 Probable RNA and SrmB- binding site of polymerase A OM954_09195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) OM954_09200 PF02548 Ketopantoate hydroxymethyltransferase OM954_09205 PF02569 Pantoate-beta-alanine ligase OM954_09210 PF02261 Aspartate decarboxylase OM954_09215 PF00342 Phosphoglucose isomerase OM954_09235 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_09235 PF01915 Glycosyl hydrolase family 3 C-terminal domain OM954_09235 PF14310 Fibronectin type III-like domain OM954_09240 PF00474 Sodium:solute symporter family OM954_09245 PF00990 Diguanylate cyclase, GGDEF domain OM954_09245 PF01590 GAF domain OM954_09245 PF00563 EAL domain OM954_09245 PF00360 Phytochrome region OM954_09250 PF00150 Cellulase (glycosyl hydrolase family 5) OM954_09250 PF02013 Cellulose or protein binding domain OM954_09255 PF00072 Response regulator receiver domain OM954_09265 PF04551 GcpE protein OM954_09270 PF01569 PAP2 superfamily OM954_09275 PF08946 Osmosensory transporter coiled coil OM954_09275 PF00083 Sugar (and other) transporter OM954_09280 PF01177 Asp/Glu/Hydantoin racemase OM954_09285 PF00892 EamA-like transporter family OM954_09290 PF01565 FAD binding domain OM954_09290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain OM954_09295 PF01180 Dihydroorotate dehydrogenase OM954_09310 PF00171 Aldehyde dehydrogenase family OM954_09325 PF00872 Transposase, Mutator family OM954_09330 PF00128 Alpha amylase, catalytic domain OM954_09350 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation OM954_09350 PF14508 Glycosyl-hydrolase 97 N-terminal OM954_09350 PF10566 Glycoside hydrolase 97 OM954_09365 PF00128 Alpha amylase, catalytic domain OM954_09365 PF00686 Starch binding domain OM954_09370 PF00356 Bacterial regulatory proteins, lacI family OM954_09375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OM954_09375 PF03129 Anticodon binding domain OM954_09375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain OM954_09375 PF02824 TGS domain OM954_09380 PF00707 Translation initiation factor IF-3, C-terminal domain OM954_09380 PF05198 Translation initiation factor IF-3, N-terminal domain OM954_09385 PF01632 Ribosomal protein L35 OM954_09390 PF00453 Ribosomal protein L20 OM954_09395 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain OM954_09395 PF01409 tRNA synthetases class II core domain (F) OM954_09400 PF03483 B3/4 domain OM954_09400 PF03484 tRNA synthetase B5 domain OM954_09400 PF03147 Ferredoxin-fold anticodon binding domain OM954_09400 PF01588 Putative tRNA binding domain OM954_09400 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain OM954_09405 PF00216 Bacterial DNA-binding protein OM954_09410 PF13411 MerR HTH family regulatory protein OM954_09430 PF02397 Bacterial sugar transferase OM954_09450 PF13439 Glycosyltransferase Family 4 OM954_09450 PF00534 Glycosyl transferases group 1 OM954_09460 PF14667 Polysaccharide biosynthesis C-terminal domain OM954_09475 PF03808 Glycosyl transferase WecB/TagA/CpsF family OM954_09490 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OM954_09490 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OM954_09500 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family OM954_09520 PF13292 1-deoxy-D-xylulose-5-phosphate synthase OM954_09520 PF02779 Transketolase, pyrimidine binding domain OM954_09520 PF02780 Transketolase, C-terminal domain OM954_09530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_09530 PF12806 Acetyl-CoA dehydrogenase C-terminal like OM954_09530 PF02770 Acyl-CoA dehydrogenase, middle domain OM954_09530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_09540 PF08212 Lipocalin-like domain OM954_09585 PF04362 Bacterial Fe(2+) trafficking OM954_09590 PF10576 Iron-sulfur binding domain of endonuclease III OM954_09590 PF00633 Helix-hairpin-helix motif OM954_09590 PF00730 HhH-GPD superfamily base excision DNA repair protein OM954_09590 PF14815 NUDIX domain OM954_09595 PF00448 SRP54-type protein, GTPase domain OM954_09595 PF02881 SRP54-type protein, helical bundle domain OM954_09605 PF05544 Proline racemase OM954_09610 PF01266 FAD dependent oxidoreductase OM954_09620 PF04324 BFD-like [2Fe-2S] binding domain OM954_09620 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_09625 PF00701 Dihydrodipicolinate synthetase family OM954_09630 PF00171 Aldehyde dehydrogenase family OM954_09635 PF01321 Creatinase/Prolidase N-terminal domain OM954_09635 PF00557 Metallopeptidase family M24 OM954_09650 PF13520 Amino acid permease OM954_09680 PF00082 Subtilase family OM954_09680 PF09286 Pro-kumamolisin, activation domain OM954_09690 PF00593 TonB dependent receptor OM954_09690 PF07715 TonB-dependent Receptor Plug Domain OM954_09700 PF07532 Bacterial Ig-like domain (group 4) OM954_09710 PF00593 TonB dependent receptor OM954_09710 PF07715 TonB-dependent Receptor Plug Domain OM954_09745 PF00872 Transposase, Mutator family OM954_09755 PF00672 HAMP domain OM954_09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_09755 PF02203 Tar ligand binding domain homologue OM954_09785 PF17287 POTRA domain OM954_09785 PF08479 POTRA domain, ShlB-type OM954_09785 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB OM954_09790 PF13332 Hemagglutinin repeat OM954_09790 PF05860 haemagglutination activity domain OM954_09790 PF15605 Bacterial toxin 28 OM954_09790 PF04829 Pre-toxin domain with VENN motif OM954_09790 PF13332 Hemagglutinin repeat OM954_09790 PF05860 haemagglutination activity domain OM954_09790 PF15605 Bacterial toxin 28 OM954_09790 PF04829 Pre-toxin domain with VENN motif OM954_09795 PF00872 Transposase, Mutator family OM954_09805 PF05598 Transposase domain (DUF772) OM954_09805 PF01609 Transposase DDE domain OM954_09825 PF03073 TspO/MBR family OM954_09830 PF00872 Transposase, Mutator family OM954_09835 PF01842 ACT domain OM954_09835 PF03447 Homoserine dehydrogenase, NAD binding domain OM954_09835 PF00742 Homoserine dehydrogenase OM954_09835 PF00696 Amino acid kinase family OM954_09835 PF13840 ACT domain OM954_09840 PF08544 GHMP kinases C terminal OM954_09840 PF00288 GHMP kinases N terminal domain OM954_09850 PF07519 Tannase and feruloyl esterase OM954_09870 PF00027 Cyclic nucleotide-binding domain OM954_09870 PF13545 Crp-like helix-turn-helix domain OM954_09875 PF03129 Anticodon binding domain OM954_09875 PF13393 Histidyl-tRNA synthetase OM954_09885 PF01634 ATP phosphoribosyltransferase OM954_09885 PF08029 HisG, C-terminal domain OM954_09890 PF00815 Histidinol dehydrogenase OM954_09895 PF00155 Aminotransferase class I and II OM954_09900 PF00475 Imidazoleglycerol-phosphate dehydratase OM954_09905 PF00117 Glutamine amidotransferase class-I OM954_09910 PF00977 Histidine biosynthesis protein OM954_09915 PF00977 Histidine biosynthesis protein OM954_09920 PF01502 Phosphoribosyl-AMP cyclohydrolase OM954_09920 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase OM954_09940 PF03079 ARD/ARD' family OM954_09945 PF00596 Class II Aldolase and Adducin N-terminal domain OM954_09950 PF13520 Amino acid permease OM954_09955 PF13520 Amino acid permease OM954_09965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OM954_09965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OM954_09970 PF01565 FAD binding domain OM954_09970 PF02913 FAD linked oxidases, C-terminal domain OM954_09990 PF08207 Elongation factor P (EF-P) KOW-like domain OM954_09990 PF09285 Elongation factor P, C-terminal OM954_09990 PF01132 Elongation factor P (EF-P) OB domain OM954_09995 PF00106 short chain dehydrogenase OM954_10000 PF00682 HMGL-like OM954_10010 PF00378 Enoyl-CoA hydratase/isomerase OM954_10020 PF07664 Ferrous iron transport protein B C terminus OM954_10020 PF02421 Ferrous iron transport protein B OM954_10020 PF07670 Nucleoside recognition OM954_10035 PF00155 Aminotransferase class I and II OM954_10040 PF03475 3-alpha domain OM954_10040 PF03473 MOSC domain OM954_10045 PF05173 Dihydrodipicolinate reductase, C-terminus OM954_10045 PF01113 Dihydrodipicolinate reductase, N-terminus OM954_10050 PF00117 Glutamine amidotransferase class-I OM954_10050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain OM954_10060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OM954_10060 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain OM954_10060 PF02142 MGS-like domain OM954_10065 PF01272 Transcription elongation factor, GreA/GreB, C-term OM954_10065 PF03449 Transcription elongation factor, N-terminal OM954_10075 PF01368 DHH family OM954_10075 PF02272 DHHA1 domain OM954_10075 PF17768 RecJ OB domain OM954_10095 PF01336 OB-fold nucleic acid binding domain OM954_10095 PF00152 tRNA synthetases class II (D, K and N) OM954_10100 PF00072 Response regulator receiver domain OM954_10105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10105 PF00512 His Kinase A (phospho-acceptor) domain OM954_10105 PF01627 Hpt domain OM954_10105 PF00072 Response regulator receiver domain OM954_10110 PF00072 Response regulator receiver domain OM954_10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10110 PF00512 His Kinase A (phospho-acceptor) domain OM954_10110 PF01627 Hpt domain OM954_10115 PF00378 Enoyl-CoA hydratase/isomerase OM954_10120 PF00501 AMP-binding enzyme OM954_10120 PF13193 AMP-binding enzyme C-terminal domain OM954_10135 PF00330 Aconitase family (aconitate hydratase) OM954_10135 PF00694 Aconitase C-terminal domain OM954_10150 PF06434 Aconitate hydratase 2 N-terminus OM954_10150 PF00330 Aconitase family (aconitate hydratase) OM954_10150 PF11791 Aconitate B N-terminal domain OM954_10155 PF00561 alpha/beta hydrolase fold OM954_10160 PF00990 Diguanylate cyclase, GGDEF domain OM954_10160 PF00563 EAL domain OM954_10160 PF03707 Bacterial signalling protein N terminal repeat OM954_10165 PF01339 CheB methylesterase OM954_10165 PF00072 Response regulator receiver domain OM954_10170 PF03975 CheD chemotactic sensory transduction OM954_10175 PF01739 CheR methyltransferase, SAM binding domain OM954_10175 PF03705 CheR methyltransferase, all-alpha domain OM954_10180 PF02203 Tar ligand binding domain homologue OM954_10180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10180 PF00672 HAMP domain OM954_10190 PF01584 CheW-like domain OM954_10195 PF07238 PilZ domain OM954_10195 PF07317 Flagellar regulator YcgR OM954_10200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10200 PF02203 Tar ligand binding domain homologue OM954_10200 PF00672 HAMP domain OM954_10205 PF02203 Tar ligand binding domain homologue OM954_10205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10205 PF00672 HAMP domain OM954_10210 PF00672 HAMP domain OM954_10210 PF02203 Tar ligand binding domain homologue OM954_10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10215 PF00672 HAMP domain OM954_10215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10215 PF02203 Tar ligand binding domain homologue OM954_10220 PF00672 HAMP domain OM954_10220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10220 PF02203 Tar ligand binding domain homologue OM954_10235 PF00672 HAMP domain OM954_10235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10235 PF02203 Tar ligand binding domain homologue OM954_10240 PF00672 HAMP domain OM954_10240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10240 PF02203 Tar ligand binding domain homologue OM954_10245 PF00672 HAMP domain OM954_10245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10250 PF00672 HAMP domain OM954_10250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10250 PF02203 Tar ligand binding domain homologue OM954_10260 PF00672 HAMP domain OM954_10260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10260 PF02203 Tar ligand binding domain homologue OM954_10265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10265 PF08269 Cache domain OM954_10265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10265 PF08269 Cache domain OM954_10275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10275 PF02203 Tar ligand binding domain homologue OM954_10275 PF00672 HAMP domain OM954_10280 PF02203 Tar ligand binding domain homologue OM954_10280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10280 PF00672 HAMP domain OM954_10285 PF01584 CheW-like domain OM954_10285 PF01627 Hpt domain OM954_10285 PF09078 CheY binding OM954_10285 PF02895 Signal transducing histidine kinase, homodimeric domain OM954_10285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10290 PF00072 Response regulator receiver domain OM954_10300 PF01584 CheW-like domain OM954_10305 PF13614 AAA domain OM954_10310 PF00691 OmpA family OM954_10310 PF13677 Membrane MotB of proton-channel complex MotA/MotB OM954_10315 PF01618 MotA/TolQ/ExbB proton channel family OM954_10355 PF01584 CheW-like domain OM954_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10355 PF01627 Hpt domain OM954_10355 PF00072 Response regulator receiver domain OM954_10355 PF02895 Signal transducing histidine kinase, homodimeric domain OM954_10360 PF04344 Chemotaxis phosphatase, CheZ OM954_10365 PF00072 Response regulator receiver domain OM954_10370 PF04542 Sigma-70 region 2 OM954_10370 PF04539 Sigma-70 region 3 OM954_10370 PF04545 Sigma-70, region 4 OM954_10375 PF10609 NUBPL iron-transfer P-loop NTPase OM954_10380 PF00448 SRP54-type protein, GTPase domain OM954_10385 PF00771 FHIPEP family OM954_10390 PF01312 FlhB HrpN YscU SpaS Family OM954_10395 PF03707 Bacterial signalling protein N terminal repeat OM954_10395 PF00990 Diguanylate cyclase, GGDEF domain OM954_10395 PF00563 EAL domain OM954_10410 PF01609 Transposase DDE domain OM954_10410 PF05598 Transposase domain (DUF772) OM954_10420 PF01311 Bacterial export proteins, family 1 OM954_10425 PF01313 Bacterial export proteins, family 3 OM954_10430 PF05598 Transposase domain (DUF772) OM954_10430 PF01609 Transposase DDE domain OM954_10435 PF00813 FliP family OM954_10440 PF04347 Flagellar biosynthesis protein, FliO OM954_10445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term OM954_10450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term OM954_10450 PF02154 Flagellar motor switch protein FliM OM954_10470 PF18269 T3SS EscN ATPase C-terminal domain OM954_10470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_10480 PF01706 FliG C-terminal domain OM954_10480 PF14841 FliG middle domain OM954_10480 PF14842 FliG N-terminal domain OM954_10485 PF01514 Secretory protein of YscJ/FliF family OM954_10485 PF08345 Flagellar M-ring protein C-terminal OM954_10490 PF02049 Flagellar hook-basal body complex protein FliE OM954_10495 PF00535 Glycosyl transferase family 2 OM954_10495 PF00534 Glycosyl transferases group 1 OM954_10515 PF02348 Cytidylyltransferase OM954_10525 PF05598 Transposase domain (DUF772) OM954_10525 PF01609 Transposase DDE domain OM954_10530 PF00872 Transposase, Mutator family OM954_10560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OM954_10560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OM954_10575 PF02954 Bacterial regulatory protein, Fis family OM954_10575 PF00158 Sigma-54 interaction domain OM954_10575 PF06490 Flagellar regulatory protein FleQ OM954_10580 PF01339 CheB methylesterase OM954_10580 PF00072 Response regulator receiver domain OM954_10585 PF04552 Sigma-54, DNA binding domain OM954_10585 PF04963 Sigma-54 factor, core binding domain OM954_10585 PF00309 Sigma-54 factor, Activator interacting domain (AID) OM954_10590 PF00196 Bacterial regulatory proteins, luxR family OM954_10590 PF00072 Response regulator receiver domain OM954_10610 PF02561 Flagellar protein FliS OM954_10615 PF07196 Flagellin hook IN motif OM954_10615 PF07195 Flagellar hook-associated protein 2 C-terminus OM954_10615 PF02465 Flagellar hook-associated protein 2 N-terminus OM954_10620 PF00700 Bacterial flagellin C-terminal helical region OM954_10620 PF00669 Bacterial flagellin N-terminal helical region OM954_10625 PF05598 Transposase domain (DUF772) OM954_10625 PF01609 Transposase DDE domain OM954_10630 PF00669 Bacterial flagellin N-terminal helical region OM954_10630 PF00700 Bacterial flagellin C-terminal helical region OM954_10635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal OM954_10635 PF07196 Flagellin hook IN motif OM954_10640 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase OM954_10640 PF10135 Rod binding protein OM954_10645 PF02119 Flagellar P-ring protein OM954_10650 PF02107 Flagellar L-ring protein OM954_10655 PF00460 Flagella basal body rod protein OM954_10655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal OM954_10665 PF00460 Flagella basal body rod protein OM954_10665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal OM954_10670 PF07559 Flagellar basal body protein FlaE OM954_10670 PF00460 Flagella basal body rod protein OM954_10670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal OM954_10675 PF03963 Flagellar hook capping protein - N-terminal region OM954_10680 PF00460 Flagella basal body rod protein OM954_10680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal OM954_10690 PF01584 CheW-like domain OM954_10690 PF00072 Response regulator receiver domain OM954_10710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10710 PF00512 His Kinase A (phospho-acceptor) domain OM954_10710 PF00989 PAS fold OM954_10710 PF13188 PAS domain OM954_10710 PF13426 PAS domain OM954_10715 PF03707 Bacterial signalling protein N terminal repeat OM954_10715 PF00990 Diguanylate cyclase, GGDEF domain OM954_10715 PF00563 EAL domain OM954_10720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_10720 PF07730 Histidine kinase OM954_10725 PF03707 Bacterial signalling protein N terminal repeat OM954_10725 PF00563 EAL domain OM954_10725 PF00990 Diguanylate cyclase, GGDEF domain OM954_10735 PF12729 Four helix bundle sensory module for signal transduction OM954_10735 PF00672 HAMP domain OM954_10735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_10740 PF04356 Protein of unknown function (DUF489) OM954_10750 PF00293 NUDIX domain OM954_10760 PF02617 ATP-dependent Clp protease adaptor protein ClpS OM954_10765 PF10431 C-terminal, D2-small domain, of ClpB protein OM954_10765 PF17871 AAA lid domain OM954_10765 PF07724 AAA domain (Cdc48 subfamily) OM954_10765 PF00004 ATPase family associated with various cellular activities (AAA) OM954_10765 PF02861 Clp amino terminal domain, pathogenicity island component OM954_10770 PF01176 Translation initiation factor 1A / IF-1 OM954_10775 PF03588 Leucyl/phenylalanyl-tRNA protein transferase OM954_10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_10790 PF17854 FtsK alpha domain OM954_10790 PF09397 Ftsk gamma domain OM954_10790 PF01580 FtsK/SpoIIIE family OM954_10790 PF13491 4TM region of DNA translocase FtsK/SpoIIIE OM954_10800 PF03548 Outer membrane lipoprotein carrier protein LolA OM954_10810 PF00004 ATPase family associated with various cellular activities (AAA) OM954_10810 PF16193 AAA C-terminal domain OM954_10810 PF12002 MgsA AAA+ ATPase C terminal OM954_10815 PF02537 CrcB-like protein, Camphor Resistance (CrcB) OM954_10820 PF00108 Thiolase, N-terminal domain OM954_10820 PF02803 Thiolase, C-terminal domain OM954_10825 PF00378 Enoyl-CoA hydratase/isomerase OM954_10825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OM954_10825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OM954_10835 PF00334 Nucleoside diphosphate kinase OM954_10840 PF04055 Radical SAM superfamily OM954_10850 PF13464 Domain of unknown function (DUF4115) OM954_10860 PF01011 PQQ enzyme repeat OM954_10860 PF13360 PQQ-like domain OM954_10865 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal OM954_10865 PF01926 50S ribosome-binding GTPase OM954_10870 PF03454 MoeA C-terminal region (domain IV) OM954_10870 PF03453 MoeA N-terminal region (domain I and II) OM954_10870 PF00994 Probable molybdopterin binding domain OM954_10875 PF00899 ThiF family OM954_10900 PF08240 Alcohol dehydrogenase GroES-like domain OM954_10900 PF13823 Alcohol dehydrogenase GroES-associated OM954_10900 PF00107 Zinc-binding dehydrogenase OM954_10910 PF03372 Endonuclease/Exonuclease/phosphatase family OM954_10920 PF03453 MoeA N-terminal region (domain I and II) OM954_10920 PF00994 Probable molybdopterin binding domain OM954_10920 PF03454 MoeA C-terminal region (domain IV) OM954_10925 PF12804 MobA-like NTP transferase domain OM954_10950 PF10414 Sirohaem synthase dimerisation region OM954_10950 PF14824 Sirohaem biosynthesis protein central OM954_10950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OM954_10955 PF00072 Response regulator receiver domain OM954_10955 PF03861 ANTAR domain OM954_10965 PF07690 Major Facilitator Superfamily OM954_10970 PF18267 Rubredoxin NAD+ reductase C-terminal domain OM954_10970 PF04324 BFD-like [2Fe-2S] binding domain OM954_10970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain OM954_10970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain OM954_10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_10980 PF04324 BFD-like [2Fe-2S] binding domain OM954_10980 PF01568 Molydopterin dinucleotide binding domain OM954_10980 PF00384 Molybdopterin oxidoreductase OM954_10980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain OM954_10985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OM954_11000 PF05974 Domain of unknown function (DUF892) OM954_11020 PF00563 EAL domain OM954_11020 PF08448 PAS fold OM954_11020 PF08447 PAS fold OM954_11020 PF00990 Diguanylate cyclase, GGDEF domain OM954_11025 PF12951 Passenger-associated-transport-repeat OM954_11025 PF12951 Passenger-associated-transport-repeat OM954_11030 PF00196 Bacterial regulatory proteins, luxR family OM954_11030 PF00072 Response regulator receiver domain OM954_11035 PF00072 Response regulator receiver domain OM954_11035 PF13426 PAS domain OM954_11035 PF08448 PAS fold OM954_11035 PF00512 His Kinase A (phospho-acceptor) domain OM954_11035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_11045 PF00873 AcrB/AcrD/AcrF family OM954_11050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_11055 PF03797 Autotransporter beta-domain OM954_11055 PF00082 Subtilase family OM954_11070 PF07995 Glucose / Sorbosone dehydrogenase OM954_11080 PF00872 Transposase, Mutator family OM954_11110 PF17091 Inovirus G7P protein OM954_11165 PF17091 Inovirus G7P protein OM954_11280 PF17091 Inovirus G7P protein OM954_11315 PF05857 TraX protein OM954_11335 PF05598 Transposase domain (DUF772) OM954_11335 PF01609 Transposase DDE domain OM954_11375 PF02810 SEC-C motif OM954_11375 PF07517 SecA DEAD-like domain OM954_11375 PF07516 SecA Wing and Scaffold domain OM954_11375 PF01043 SecA preprotein cross-linking domain OM954_11385 PF00872 Transposase, Mutator family OM954_11400 PF08241 Methyltransferase domain OM954_11400 PF12697 Alpha/beta hydrolase family OM954_11415 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase OM954_11415 PF02585 GlcNAc-PI de-N-acetylase OM954_11445 PF08751 TrwC relaxase OM954_11445 PF18272 single-stranded DNA binding TraI N-terminal subdomain OM954_11445 PF07057 DNA helicase TraI OM954_11445 PF18340 DNA relaxase TraI 2B/2B-like domain OM954_11500 PF00872 Transposase, Mutator family OM954_11515 PF06616 BsuBI/PstI restriction endonuclease domain OM954_11515 PF17728 BsuBI/PstI restriction endonuclease HTH domain OM954_11520 PF13614 AAA domain OM954_11565 PF02810 SEC-C motif OM954_11565 PF03695 Uncharacterised protein family (UPF0149) OM954_11580 PF02796 Helix-turn-helix domain of resolvase OM954_11580 PF00239 Resolvase, N terminal domain OM954_11595 PF00872 Transposase, Mutator family OM954_11625 PF00440 Bacterial regulatory proteins, tetR family OM954_11635 PF01106 NifU-like domain OM954_11640 PF01329 Pterin 4 alpha carbinolamine dehydratase OM954_11650 PF02535 ZIP Zinc transporter OM954_11655 PF11737 Protein of unknown function (DUF3300) OM954_11660 PF01479 S4 domain OM954_11660 PF00849 RNA pseudouridylate synthase OM954_11665 PF00575 S1 RNA binding domain OM954_11665 PF10150 Ribonuclease E/G family OM954_11665 PF12111 Polyribonucleotide phosphorylase C terminal OM954_11670 PF05598 Transposase domain (DUF772) OM954_11670 PF01609 Transposase DDE domain OM954_11675 PF00196 Bacterial regulatory proteins, luxR family OM954_11675 PF00072 Response regulator receiver domain OM954_11680 PF17773 UPF0176 acylphosphatase like domain OM954_11680 PF00581 Rhodanese-like domain OM954_11690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OM954_11700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain OM954_11700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OM954_11700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OM954_11725 PF01066 CDP-alcohol phosphatidyltransferase OM954_11730 PF08459 UvrC Helix-hairpin-helix N-terminal OM954_11730 PF02151 UvrB/uvrC motif OM954_11730 PF01541 GIY-YIG catalytic domain OM954_11740 PF01451 Low molecular weight phosphotyrosine protein phosphatase OM954_11745 PF02348 Cytidylyltransferase OM954_11750 PF02606 Tetraacyldisaccharide-1-P 4'-kinase OM954_11755 PF00664 ABC transporter transmembrane region OM954_11755 PF00005 ABC transporter OM954_11765 PF01618 MotA/TolQ/ExbB proton channel family OM954_11770 PF03772 Competence protein OM954_11770 PF00753 Metallo-beta-lactamase superfamily OM954_11780 PF00005 ABC transporter OM954_11785 PF12704 MacB-like periplasmic core domain OM954_11785 PF02687 FtsX-like permease family OM954_11795 PF03937 Flavinator of succinate dehydrogenase OM954_11800 PF13085 2Fe-2S iron-sulfur cluster binding domain OM954_11810 PF02910 Fumarate reductase flavoprotein C-term OM954_11810 PF00890 FAD binding domain OM954_11815 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit OM954_11820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit OM954_11830 PF01571 Aminomethyltransferase folate-binding domain OM954_11835 PF00005 ABC transporter OM954_11835 PF17912 MalK OB fold domain OM954_11840 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain OM954_11840 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain OM954_11845 PF02685 Glucokinase OM954_11850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase OM954_11855 PF00920 Dehydratase family OM954_11860 PF01081 KDPG and KHG aldolase OM954_11865 PF00873 AcrB/AcrD/AcrF family OM954_11870 PF00873 AcrB/AcrD/AcrF family OM954_11875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_11885 PF00034 Cytochrome c OM954_11925 PF09308 LuxQ, periplasmic OM954_11925 PF00072 Response regulator receiver domain OM954_11925 PF00512 His Kinase A (phospho-acceptor) domain OM954_11925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_11930 PF17674 HHH domain OM954_11930 PF00575 S1 RNA binding domain OM954_11930 PF09371 Tex-like protein N-terminal domain OM954_11930 PF16921 Tex protein YqgF-like domain OM954_11940 PF00355 Rieske [2Fe-2S] domain OM954_11940 PF01266 FAD dependent oxidoreductase OM954_11955 PF00561 alpha/beta hydrolase fold OM954_11965 PF01066 CDP-alcohol phosphatidyltransferase OM954_11985 PF03618 Kinase/pyrophosphorylase OM954_11990 PF02896 PEP-utilising enzyme, TIM barrel domain OM954_11990 PF00391 PEP-utilising enzyme, mobile domain OM954_11990 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain OM954_12000 PF00929 Exonuclease OM954_12005 PF14437 MafB19-like deaminase OM954_12010 PF02742 Iron dependent repressor, metal binding and dimerisation domain OM954_12010 PF01325 Iron dependent repressor, N-terminal DNA binding domain OM954_12015 PF01566 Natural resistance-associated macrophage protein OM954_12020 PF00561 alpha/beta hydrolase fold OM954_12035 PF05977 Transmembrane secretion effector OM954_12040 PF07969 Amidohydrolase family OM954_12050 PF00857 Isochorismatase family OM954_12065 PF00072 Response regulator receiver domain OM954_12065 PF00196 Bacterial regulatory proteins, luxR family OM954_12095 PF03466 LysR substrate binding domain OM954_12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_12100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OM954_12100 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus OM954_12100 PF00361 Proton-conducting membrane transporter OM954_12105 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) OM954_12115 PF00107 Zinc-binding dehydrogenase OM954_12115 PF08240 Alcohol dehydrogenase GroES-like domain OM954_12120 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase OM954_12125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_12125 PF03466 LysR substrate binding domain OM954_12130 PF13276 HTH-like domain OM954_12130 PF00665 Integrase core domain OM954_12130 PF13333 Integrase core domain OM954_12140 PF12161 HsdM N-terminal domain OM954_12140 PF02384 N-6 DNA Methylase OM954_12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_12155 PF03466 LysR substrate binding domain OM954_12200 PF00117 Glutamine amidotransferase class-I OM954_12200 PF02540 NAD synthase OM954_12200 PF00958 GMP synthase C terminal domain OM954_12205 PF00571 CBS domain OM954_12205 PF00478 IMP dehydrogenase / GMP reductase domain OM954_12210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OM954_12210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OM954_12220 PF00999 Sodium/hydrogen exchanger family OM954_12220 PF02254 TrkA-N domain OM954_12225 PF00483 Nucleotidyl transferase OM954_12230 PF02719 Polysaccharide biosynthesis protein OM954_12235 PF00953 Glycosyl transferase family 4 OM954_12240 PF18073 Rubredoxin metal binding domain OM954_12250 PF00216 Bacterial DNA-binding protein OM954_12255 PF00575 S1 RNA binding domain OM954_12260 PF02224 Cytidylate kinase OM954_12265 PF00444 Ribosomal protein L36 OM954_12275 PF04371 Porphyromonas-type peptidyl-arginine deiminase OM954_12280 PF00795 Carbon-nitrogen hydrolase OM954_12305 PF00528 Binding-protein-dependent transport system inner membrane component OM954_12310 PF00528 Binding-protein-dependent transport system inner membrane component OM954_12330 PF00356 Bacterial regulatory proteins, lacI family OM954_12340 PF03795 YCII-related domain OM954_12345 PF02616 Segregation and condensation protein ScpA OM954_12350 PF04079 Segregation and condensation complex subunit ScpB OM954_12355 PF00849 RNA pseudouridylate synthase OM954_12355 PF01479 S4 domain OM954_12370 PF00795 Carbon-nitrogen hydrolase OM954_12375 PF00155 Aminotransferase class I and II OM954_12380 PF00005 ABC transporter OM954_12385 PF03379 CcmB protein OM954_12390 PF01578 Cytochrome C assembly protein OM954_12400 PF03100 CcmE OM954_12405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal OM954_12405 PF01578 Cytochrome C assembly protein OM954_12410 PF08534 Redoxin OM954_12415 PF03918 Cytochrome C biogenesis protein OM954_12425 PF00561 alpha/beta hydrolase fold OM954_12435 PF00005 ABC transporter OM954_12435 PF00664 ABC transporter transmembrane region OM954_12440 PF00005 ABC transporter OM954_12440 PF00664 ABC transporter transmembrane region OM954_12445 PF01654 Cytochrome bd terminal oxidase subunit I OM954_12450 PF02322 Cytochrome bd terminal oxidase subunit II OM954_12470 PF02129 X-Pro dipeptidyl-peptidase (S15 family) OM954_12470 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain OM954_12480 PF00171 Aldehyde dehydrogenase family OM954_12485 PF00696 Amino acid kinase family OM954_12485 PF01472 PUA domain OM954_12495 PF00206 Lyase OM954_12500 PF01118 Semialdehyde dehydrogenase, NAD binding domain OM954_12510 PF00696 Amino acid kinase family OM954_12510 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase OM954_12515 PF01546 Peptidase family M20/M25/M40 OM954_12515 PF07687 Peptidase dimerisation domain OM954_12525 PF00764 Arginosuccinate synthase OM954_12530 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OM954_12530 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OM954_12540 PF01406 tRNA synthetases class I (C) catalytic domain OM954_12540 PF09190 DALR domain OM954_12545 PF02657 Fe-S metabolism associated domain OM954_12555 PF01258 Prokaryotic dksA/traR C4-type zinc finger OM954_12565 PF01809 Putative membrane protein insertion efficiency factor OM954_12570 PF01979 Amidohydrolase family OM954_12575 PF01551 Peptidase family M23 OM954_12575 PF08460 Bacterial SH3 domain OM954_12590 PF06751 Ethanolamine ammonia lyase large subunit (EutB) OM954_12595 PF05985 Ethanolamine ammonia-lyase light chain (EutC) OM954_12605 PF00753 Metallo-beta-lactamase superfamily OM954_12625 PF01609 Transposase DDE domain OM954_12625 PF05598 Transposase domain (DUF772) OM954_12635 PF00295 Glycosyl hydrolases family 28 OM954_12650 PF13419 Haloacid dehalogenase-like hydrolase OM954_12660 PF01979 Amidohydrolase family OM954_12670 PF01132 Elongation factor P (EF-P) OB domain OM954_12670 PF08207 Elongation factor P (EF-P) KOW-like domain OM954_12670 PF09285 Elongation factor P, C-terminal OM954_12675 PF04055 Radical SAM superfamily OM954_12680 PF03707 Bacterial signalling protein N terminal repeat OM954_12680 PF00990 Diguanylate cyclase, GGDEF domain OM954_12680 PF13188 PAS domain OM954_12680 PF00563 EAL domain OM954_12690 PF00588 SpoU rRNA Methylase family OM954_12695 PF00459 Inositol monophosphatase family OM954_12700 PF02777 Iron/manganese superoxide dismutases, C-terminal domain OM954_12700 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain OM954_12705 PF00545 ribonuclease OM954_12715 PF12848 ABC transporter OM954_12715 PF16326 ABC transporter C-terminal domain OM954_12715 PF00005 ABC transporter OM954_12720 PF03880 DbpA RNA binding domain OM954_12720 PF00271 Helicase conserved C-terminal domain OM954_12720 PF00270 DEAD/DEAH box helicase OM954_12725 PF00156 Phosphoribosyl transferase domain OM954_12730 PF02696 Uncharacterized ACR, YdiU/UPF0061 family OM954_12735 PF00135 Carboxylesterase family OM954_12745 PF14497 Glutathione S-transferase, C-terminal domain OM954_12745 PF02798 Glutathione S-transferase, N-terminal domain OM954_12750 PF00313 'Cold-shock' DNA-binding domain OM954_12755 PF07152 YaeQ protein OM954_12765 PF00563 EAL domain OM954_12765 PF00990 Diguanylate cyclase, GGDEF domain OM954_12765 PF00072 Response regulator receiver domain OM954_12770 PF01435 Peptidase family M48 OM954_12775 PF00749 tRNA synthetases class I (E and Q), catalytic domain OM954_12780 PF00106 short chain dehydrogenase OM954_12785 PF05233 PHB accumulation regulatory domain OM954_12785 PF07879 PHB/PHA accumulation regulator DNA-binding domain OM954_12805 PF08676 MutL C terminal dimerisation domain OM954_12805 PF01119 DNA mismatch repair protein, C-terminal domain OM954_12810 PF11741 AMIN domain OM954_12810 PF01520 N-acetylmuramoyl-L-alanine amidase OM954_12815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE OM954_12820 PF01256 Carbohydrate kinase OM954_12820 PF03853 YjeF-related protein N-terminus OM954_12825 PF08331 Domain of unknown function (DUF1730) OM954_12830 PF02601 Exonuclease VII, large subunit OM954_12830 PF13742 OB-fold nucleic acid binding domain OM954_12840 PF03781 Sulfatase-modifying factor enzyme 1 OM954_12850 PF01612 3'-5' exonuclease OM954_12850 PF00570 HRDC domain OM954_12855 PF04679 ATP dependent DNA ligase C terminal region OM954_12855 PF01068 ATP dependent DNA ligase domain OM954_12855 PF13298 DNA polymerase Ligase (LigD) OM954_12885 PF01584 CheW-like domain OM954_12890 PF00672 HAMP domain OM954_12890 PF02743 Cache domain OM954_12890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_12895 PF02245 Methylpurine-DNA glycosylase (MPG) OM954_12900 PF00270 DEAD/DEAH box helicase OM954_12900 PF08494 DEAD/H associated OM954_12900 PF00271 Helicase conserved C-terminal domain OM954_12920 PF04386 Stringent starvation protein B OM954_12925 PF00043 Glutathione S-transferase, C-terminal domain OM954_12925 PF02798 Glutathione S-transferase, N-terminal domain OM954_12930 PF02167 Cytochrome C1 family OM954_12935 PF00032 Cytochrome b(C-terminal)/b6/petD OM954_12935 PF00033 Cytochrome b/b6/petB OM954_12940 PF00355 Rieske [2Fe-2S] domain OM954_12940 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal OM954_12945 PF01464 Transglycosylase SLT domain OM954_12960 PF04055 Radical SAM superfamily OM954_12960 PF01938 TRAM domain OM954_12960 PF00919 Uncharacterized protein family UPF0004 OM954_12965 PF02562 PhoH-like protein OM954_12975 PF02130 Uncharacterized protein family UPF0054 OM954_12985 PF03471 Transporter associated domain OM954_12985 PF00571 CBS domain OM954_13000 PF00171 Aldehyde dehydrogenase family OM954_13005 PF00528 Binding-protein-dependent transport system inner membrane component OM954_13010 PF00528 Binding-protein-dependent transport system inner membrane component OM954_13015 PF00005 ABC transporter OM954_13015 PF08402 TOBE domain OM954_13020 PF02321 Outer membrane efflux protein OM954_13025 PF07690 Major Facilitator Superfamily OM954_13030 PF13533 Biotin-lipoyl like OM954_13035 PF13416 Bacterial extracellular solute-binding protein OM954_13040 PF00202 Aminotransferase class-III OM954_13050 PF00120 Glutamine synthetase, catalytic domain OM954_13055 PF07722 Peptidase C26 OM954_13060 PF00120 Glutamine synthetase, catalytic domain OM954_13065 PF01266 FAD dependent oxidoreductase OM954_13070 PF00072 Response regulator receiver domain OM954_13070 PF00990 Diguanylate cyclase, GGDEF domain OM954_13075 PF01814 Hemerythrin HHE cation binding domain OM954_13080 PF07690 Major Facilitator Superfamily OM954_13080 PF00083 Sugar (and other) transporter OM954_13090 PF00384 Molybdopterin oxidoreductase OM954_13095 PF02634 FdhD/NarQ family OM954_13100 PF07690 Major Facilitator Superfamily OM954_13110 PF00202 Aminotransferase class-III OM954_13120 PF04286 Protein of unknown function (DUF445) OM954_13125 PF00672 HAMP domain OM954_13125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_13125 PF00512 His Kinase A (phospho-acceptor) domain OM954_13125 PF01627 Hpt domain OM954_13125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) OM954_13125 PF00072 Response regulator receiver domain OM954_13130 PF00072 Response regulator receiver domain OM954_13135 PF07690 Major Facilitator Superfamily OM954_13140 PF00672 HAMP domain OM954_13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_13140 PF02203 Tar ligand binding domain homologue OM954_13170 PF05088 Bacterial NAD-glutamate dehydrogenase OM954_13180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_13180 PF00529 HlyD membrane-fusion protein of T1SS OM954_13185 PF00873 AcrB/AcrD/AcrF family OM954_13190 PF00356 Bacterial regulatory proteins, lacI family OM954_13195 PF05524 PEP-utilising enzyme, N-terminal OM954_13195 PF00391 PEP-utilising enzyme, mobile domain OM954_13195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 OM954_13195 PF02896 PEP-utilising enzyme, TIM barrel domain OM954_13195 PF00381 PTS HPr component phosphorylation site OM954_13200 PF00294 pfkB family carbohydrate kinase OM954_13205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit OM954_13225 PF00872 Transposase, Mutator family OM954_13230 PF07549 SecD/SecF GG Motif OM954_13230 PF02355 Protein export membrane protein OM954_13235 PF07549 SecD/SecF GG Motif OM954_13235 PF13721 SecD export protein N-terminal TM region OM954_13235 PF02355 Protein export membrane protein OM954_13240 PF02699 Preprotein translocase subunit OM954_13245 PF01702 Queuine tRNA-ribosyltransferase OM954_13250 PF02547 Queuosine biosynthesis protein OM954_13290 PF02927 Cellulase N-terminal ig-like domain OM954_13290 PF00759 Glycosyl hydrolase family 9 OM954_13300 PF00037 4Fe-4S binding domain OM954_13310 PF01467 Cytidylyltransferase-like OM954_13320 PF00183 Hsp90 protein OM954_13320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_13345 PF03421 YopJ Serine/Threonine acetyltransferase OM954_13390 PF03135 CagE, TrbE, VirB family, component of type IV transporter system OM954_13395 PF05101 Type IV secretory pathway, VirB3-like protein OM954_13405 PF01464 Transglycosylase SLT domain OM954_13410 PF00437 Type II/IV secretion system protein OM954_13415 PF03743 Bacterial conjugation TrbI-like protein OM954_13435 PF02534 Type IV secretory system Conjugative DNA transfer OM954_13450 PF12344 Ultra-violet resistance protein B OM954_13450 PF00271 Helicase conserved C-terminal domain OM954_13450 PF17757 UvrB interaction domain OM954_13450 PF02151 UvrB/uvrC motif OM954_13450 PF04851 Type III restriction enzyme, res subunit OM954_13630 PF00182 Chitinase class I OM954_13685 PF01555 DNA methylase OM954_13720 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor OM954_13720 PF07963 Prokaryotic N-terminal methylation motif OM954_13725 PF05567 Neisseria PilC beta-propeller domain OM954_13765 PF03641 Possible lysine decarboxylase OM954_13765 PF11892 Domain of unknown function (DUF3412) OM954_13765 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases OM954_13770 PF00593 TonB dependent receptor OM954_13775 PF01914 MarC family integral membrane protein OM954_13785 PF00462 Glutaredoxin OM954_13790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain OM954_13790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain OM954_13795 PF02222 ATP-grasp domain OM954_13795 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain OM954_13800 PF00731 AIR carboxylase OM954_13810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain OM954_13810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain OM954_13820 PF00575 S1 RNA binding domain OM954_13820 PF03725 3' exoribonuclease family, domain 2 OM954_13820 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain OM954_13820 PF00013 KH domain OM954_13820 PF01138 3' exoribonuclease family, domain 1 OM954_13825 PF00312 Ribosomal protein S15 OM954_13830 PF01509 TruB family pseudouridylate synthase (N terminal domain) OM954_13830 PF16198 tRNA pseudouridylate synthase B C-terminal domain OM954_13830 PF09157 Pseudouridine synthase II TruB, C-terminal OM954_13835 PF02033 Ribosome-binding factor A OM954_13840 PF00009 Elongation factor Tu GTP binding domain OM954_13840 PF11987 Translation-initiation factor 2 OM954_13840 PF08364 Bacterial translation initiation factor IF-2 associated region OM954_13840 PF04760 Translation initiation factor IF-2, N-terminal region OM954_13845 PF13184 NusA-like KH domain OM954_13845 PF00575 S1 RNA binding domain OM954_13845 PF08529 NusA N-terminal domain OM954_13850 PF17384 RimP C-terminal SH3 domain OM954_13850 PF02576 RimP N-terminal domain OM954_13860 PF00361 Proton-conducting membrane transporter OM954_13865 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus OM954_13865 PF00361 Proton-conducting membrane transporter OM954_13870 PF00361 Proton-conducting membrane transporter OM954_13870 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OM954_13875 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L OM954_13880 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 OM954_13885 PF12838 4Fe-4S dicluster domain OM954_13890 PF00146 NADH dehydrogenase OM954_13895 PF00384 Molybdopterin oxidoreductase OM954_13895 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region OM954_13895 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal OM954_13900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit OM954_13900 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region OM954_13900 PF10531 SLBB domain OM954_13910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit OM954_13915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit OM954_13920 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit OM954_13925 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 OM954_13940 PF00121 Triosephosphate isomerase OM954_13945 PF00106 short chain dehydrogenase OM954_13960 PF03707 Bacterial signalling protein N terminal repeat OM954_13960 PF00990 Diguanylate cyclase, GGDEF domain OM954_13960 PF00563 EAL domain OM954_13975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OM954_13975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OM954_13975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OM954_13975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OM954_13980 PF01039 Carboxyl transferase domain OM954_13980 PF17848 Acetyl-coA carboxylase zinc finger domain OM954_13985 PF00290 Tryptophan synthase alpha chain OM954_13995 PF00291 Pyridoxal-phosphate dependent enzyme OM954_14000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_14000 PF03466 LysR substrate binding domain OM954_14005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase OM954_14010 PF01416 tRNA pseudouridine synthase OM954_14025 PF02774 Semialdehyde dehydrogenase, dimerisation domain OM954_14025 PF01118 Semialdehyde dehydrogenase, NAD binding domain OM954_14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OM954_14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OM954_14035 PF01264 Chorismate synthase OM954_14040 PF05175 Methyltransferase small domain OM954_14045 PF02630 SCO1/SenC OM954_14050 PF02666 Phosphatidylserine decarboxylase OM954_14060 PF05872 Bacterial protein of unknown function (DUF853) OM954_14085 PF01272 Transcription elongation factor, GreA/GreB, C-term OM954_14085 PF03449 Transcription elongation factor, N-terminal OM954_14090 PF00919 Uncharacterized protein family UPF0004 OM954_14090 PF04055 Radical SAM superfamily OM954_14090 PF18693 TRAM domain OM954_14095 PF01738 Dienelactone hydrolase family OM954_14115 PF00692 dUTPase OM954_14120 PF10609 NUBPL iron-transfer P-loop NTPase OM954_14125 PF07715 TonB-dependent Receptor Plug Domain OM954_14125 PF00593 TonB dependent receptor OM954_14150 PF01431 Peptidase family M13 OM954_14150 PF05649 Peptidase family M13 OM954_14175 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_14175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OM954_14180 PF01266 FAD dependent oxidoreductase OM954_14185 PF04235 Protein of unknown function (DUF418) OM954_14190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OM954_14195 PF00877 NlpC/P60 family OM954_14200 PF00877 NlpC/P60 family OM954_14215 PF00375 Sodium:dicarboxylate symporter family OM954_14220 PF00245 Alkaline phosphatase OM954_14225 PF09179 TilS substrate binding domain OM954_14225 PF01171 PP-loop family OM954_14225 PF11734 TilS substrate C-terminal domain OM954_14230 PF02609 Exonuclease VII small subunit OM954_14235 PF00348 Polyprenyl synthetase OM954_14240 PF14521 Lysine-specific metallo-endopeptidase OM954_14250 PF01523 Putative modulator of DNA gyrase OM954_14255 PF04751 Protein of unknown function (DUF615) OM954_14260 PF01523 Putative modulator of DNA gyrase OM954_14270 PF13502 AsmA-like C-terminal region OM954_14270 PF13116 Protein of unknown function OM954_14275 PF10150 Ribonuclease E/G family OM954_14275 PF00575 S1 RNA binding domain OM954_14280 PF02545 Maf-like protein OM954_14285 PF04402 Protein of unknown function (DUF541) OM954_14300 PF02590 Predicted SPOUT methyltransferase OM954_14315 PF01467 Cytidylyltransferase-like OM954_14330 PF08264 Anticodon-binding domain of tRNA OM954_14330 PF13603 Leucyl-tRNA synthetase, Domain 2 OM954_14330 PF00133 tRNA synthetases class I (I, L, M and V) OM954_14340 PF00085 Thioredoxin OM954_14360 PF07043 Protein of unknown function (DUF1328) OM954_14365 PF04070 Domain of unknown function (DUF378) OM954_14370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OM954_14380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_14380 PF03466 LysR substrate binding domain OM954_14385 PF01022 Bacterial regulatory protein, arsR family OM954_14415 PF00664 ABC transporter transmembrane region OM954_14415 PF00005 ABC transporter OM954_14425 PF00873 AcrB/AcrD/AcrF family OM954_14440 PF02321 Outer membrane efflux protein OM954_14445 PF00486 Transcriptional regulatory protein, C terminal OM954_14445 PF00072 Response regulator receiver domain OM954_14450 PF00672 HAMP domain OM954_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_14450 PF00512 His Kinase A (phospho-acceptor) domain OM954_14455 PF00999 Sodium/hydrogen exchanger family OM954_14460 PF00144 Beta-lactamase OM954_14465 PF03737 Aldolase/RraA OM954_14480 PF00990 Diguanylate cyclase, GGDEF domain OM954_14485 PF01479 S4 domain OM954_14485 PF00849 RNA pseudouridylate synthase OM954_14490 PF00563 EAL domain OM954_14490 PF00990 Diguanylate cyclase, GGDEF domain OM954_14490 PF08448 PAS fold OM954_14495 PF03880 DbpA RNA binding domain OM954_14495 PF00270 DEAD/DEAH box helicase OM954_14495 PF00271 Helicase conserved C-terminal domain OM954_14500 PF04542 Sigma-70 region 2 OM954_14500 PF08281 Sigma-70, region 4 OM954_14545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain OM954_14545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain OM954_14555 PF00654 Voltage gated chloride channel OM954_14560 PF08240 Alcohol dehydrogenase GroES-like domain OM954_14560 PF00107 Zinc-binding dehydrogenase OM954_14575 PF00593 TonB dependent receptor OM954_14575 PF07715 TonB-dependent Receptor Plug Domain OM954_14595 PF01483 Proprotein convertase P-domain OM954_14595 PF00082 Subtilase family OM954_14605 PF01483 Proprotein convertase P-domain OM954_14605 PF00082 Subtilase family OM954_14615 PF00248 Aldo/keto reductase family OM954_14620 PF07690 Major Facilitator Superfamily OM954_14625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_14625 PF03466 LysR substrate binding domain OM954_14635 PF06719 AraC-type transcriptional regulator N-terminus OM954_14635 PF12833 Helix-turn-helix domain OM954_14645 PF16859 Tetracyclin repressor-like, C-terminal domain OM954_14645 PF00440 Bacterial regulatory proteins, tetR family OM954_14650 PF02321 Outer membrane efflux protein OM954_14655 PF00873 AcrB/AcrD/AcrF family OM954_14660 PF00529 HlyD membrane-fusion protein of T1SS OM954_14660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_14670 PF01475 Ferric uptake regulator family OM954_14675 PF00749 tRNA synthetases class I (E and Q), catalytic domain OM954_14700 PF06123 Inner membrane protein CreD OM954_14720 PF00072 Response regulator receiver domain OM954_14720 PF00486 Transcriptional regulatory protein, C terminal OM954_14725 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ OM954_14740 PF00271 Helicase conserved C-terminal domain OM954_14740 PF02559 CarD-like/TRCF domain OM954_14740 PF00270 DEAD/DEAH box helicase OM954_14740 PF03461 TRCF domain OM954_14740 PF17757 UvrB interaction domain OM954_14750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_14750 PF02895 Signal transducing histidine kinase, homodimeric domain OM954_14750 PF09078 CheY binding OM954_14750 PF01627 Hpt domain OM954_14750 PF01584 CheW-like domain OM954_14755 PF00672 HAMP domain OM954_14755 PF02203 Tar ligand binding domain homologue OM954_14755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_14760 PF01584 CheW-like domain OM954_14765 PF13426 PAS domain OM954_14765 PF00990 Diguanylate cyclase, GGDEF domain OM954_14765 PF00563 EAL domain OM954_14770 PF01739 CheR methyltransferase, SAM binding domain OM954_14770 PF03705 CheR methyltransferase, all-alpha domain OM954_14775 PF01339 CheB methylesterase OM954_14775 PF00072 Response regulator receiver domain OM954_14785 PF01431 Peptidase family M13 OM954_14785 PF05649 Peptidase family M13 OM954_14795 PF00300 Histidine phosphatase superfamily (branch 1) OM954_14800 PF04493 Endonuclease V OM954_14810 PF02678 Pirin OM954_14810 PF05726 Pirin C-terminal cupin domain OM954_14825 PF02678 Pirin OM954_14825 PF05726 Pirin C-terminal cupin domain OM954_14830 PF02554 Carbon starvation protein CstA OM954_14830 PF13722 5TM C-terminal transporter carbon starvation CstA OM954_14835 PF04328 Selenoprotein, putative OM954_14845 PF12796 Ankyrin repeats (3 copies) OM954_14870 PF13478 XdhC Rossmann domain OM954_14870 PF02625 XdhC and CoxI family OM954_14875 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase OM954_14875 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain OM954_14880 PF00941 FAD binding domain in molybdopterin dehydrogenase OM954_14880 PF03450 CO dehydrogenase flavoprotein C-terminal domain OM954_14885 PF01799 [2Fe-2S] binding domain OM954_14885 PF10518 TAT (twin-arginine translocation) pathway signal sequence OM954_14885 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_14890 PF16197 Ketoacyl-synthetase C-terminal extension OM954_14890 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_14890 PF14765 Polyketide synthase dehydratase OM954_14890 PF00550 Phosphopantetheine attachment site OM954_14890 PF08240 Alcohol dehydrogenase GroES-like domain OM954_14890 PF00698 Acyl transferase domain OM954_14890 PF08659 KR domain OM954_14890 PF00107 Zinc-binding dehydrogenase OM954_14890 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_14895 PF00990 Diguanylate cyclase, GGDEF domain OM954_14895 PF00360 Phytochrome region OM954_14895 PF00563 EAL domain OM954_14895 PF01590 GAF domain OM954_14900 PF00436 Single-strand binding protein family OM954_14905 PF00348 Polyprenyl synthetase OM954_14915 PF02875 Mur ligase family, glutamate ligase domain OM954_14915 PF08245 Mur ligase middle domain OM954_14930 PF00696 Amino acid kinase family OM954_14930 PF01842 ACT domain OM954_14935 PF02567 Phenazine biosynthesis-like protein OM954_14940 PF02567 Phenazine biosynthesis-like protein OM954_14950 PF02566 OsmC-like protein OM954_14955 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OM954_14955 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OM954_14960 PF03652 Holliday junction resolvase OM954_14965 PF02622 Uncharacterized ACR, COG1678 OM954_14970 PF13687 Domain of unknown function (DUF4153) OM954_14975 PF00117 Glutamine amidotransferase class-I OM954_14975 PF13302 Acetyltransferase (GNAT) domain OM954_14975 PF00958 GMP synthase C terminal domain OM954_14975 PF13673 Acetyltransferase (GNAT) domain OM954_14975 PF03352 Methyladenine glycosylase OM954_14990 PF00437 Type II/IV secretion system protein OM954_14995 PF00437 Type II/IV secretion system protein OM954_15000 PF01168 Alanine racemase, N-terminal domain OM954_15005 PF14748 Pyrroline-5-carboxylate reductase dimerisation OM954_15005 PF03807 NADP oxidoreductase coenzyme F420-dependent OM954_15015 PF01551 Peptidase family M23 OM954_15035 PF01965 DJ-1/PfpI family OM954_15045 PF02082 Transcriptional regulator OM954_15050 PF01458 Uncharacterized protein family (UPF0051) OM954_15055 PF00005 ABC transporter OM954_15060 PF01458 Uncharacterized protein family (UPF0051) OM954_15065 PF00266 Aminotransferase class-V OM954_15070 PF00583 Acetyltransferase (GNAT) family OM954_15075 PF00355 Rieske [2Fe-2S] domain OM954_15080 PF07715 TonB-dependent Receptor Plug Domain OM954_15080 PF00593 TonB dependent receptor OM954_15085 PF18331 PKHD-type hydroxylase C-terminal domain OM954_15085 PF13640 2OG-Fe(II) oxygenase superfamily OM954_15110 PF00872 Transposase, Mutator family OM954_15115 PF02424 ApbE family OM954_15120 PF00258 Flavodoxin OM954_15120 PF00175 Oxidoreductase NAD-binding domain OM954_15120 PF00667 FAD binding domain OM954_15125 PF05962 HutD OM954_15145 PF01636 Phosphotransferase enzyme family OM954_15150 PF00483 Nucleotidyl transferase OM954_15155 PF00308 Bacterial dnaA protein OM954_15160 PF01594 AI-2E family transporter OM954_15170 PF00586 AIR synthase related protein, N-terminal domain OM954_15170 PF02769 AIR synthase related protein, C-terminal domain OM954_15185 PF00551 Formyl transferase OM954_15205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) OM954_15210 PF01722 BolA-like protein OM954_15215 PF00571 CBS domain OM954_15215 PF01380 SIS domain OM954_15230 PF03968 OstA-like protein OM954_15235 PF00005 ABC transporter OM954_15240 PF04963 Sigma-54 factor, core binding domain OM954_15240 PF04552 Sigma-54, DNA binding domain OM954_15240 PF00309 Sigma-54 factor, Activator interacting domain (AID) OM954_15245 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein OM954_15250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 OM954_15255 PF07475 HPr Serine kinase C-terminal domain OM954_15255 PF02603 HPr Serine kinase N terminus OM954_15260 PF03668 P-loop ATPase protein family OM954_15270 PF00381 PTS HPr component phosphorylation site OM954_15285 PF01769 Divalent cation transporter OM954_15285 PF03448 MgtE intracellular N domain OM954_15285 PF00571 CBS domain OM954_15290 PF00756 Putative esterase OM954_15295 PF02322 Cytochrome bd terminal oxidase subunit II OM954_15325 PF03743 Bacterial conjugation TrbI-like protein OM954_15345 PF01751 Toprim domain OM954_15345 PF01131 DNA topoisomerase OM954_15360 PF13406 Transglycosylase SLT domain OM954_15430 PF01654 Cytochrome bd terminal oxidase subunit I OM954_15440 PF00324 Amino acid permease OM954_15460 PF00561 alpha/beta hydrolase fold OM954_15465 PF00196 Bacterial regulatory proteins, luxR family OM954_15470 PF00324 Amino acid permease OM954_15490 PF12706 Beta-lactamase superfamily domain OM954_15495 PF04820 Tryptophan halogenase OM954_15530 PF09278 MerR, DNA binding OM954_15530 PF00376 MerR family regulatory protein OM954_15535 PF07690 Major Facilitator Superfamily OM954_15540 PF03738 Glutathionylspermidine synthase preATP-grasp OM954_15565 PF04012 PspA/IM30 family OM954_15575 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region OM954_15575 PF01243 Pyridoxamine 5'-phosphate oxidase OM954_15580 PF01202 Shikimate kinase OM954_15585 PF01761 3-dehydroquinate synthase OM954_15595 PF01208 Uroporphyrinogen decarboxylase (URO-D) OM954_15600 PF07690 Major Facilitator Superfamily OM954_15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_15605 PF00512 His Kinase A (phospho-acceptor) domain OM954_15605 PF01627 Hpt domain OM954_15605 PF00072 Response regulator receiver domain OM954_15605 PF00672 HAMP domain OM954_15605 PF17149 Periplasmic sensor domain found in signal transduction proteins OM954_15610 PF00072 Response regulator receiver domain OM954_15610 PF00672 HAMP domain OM954_15610 PF01627 Hpt domain OM954_15610 PF17149 Periplasmic sensor domain found in signal transduction proteins OM954_15610 PF00512 His Kinase A (phospho-acceptor) domain OM954_15610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_15615 PF00512 His Kinase A (phospho-acceptor) domain OM954_15615 PF01627 Hpt domain OM954_15615 PF00072 Response regulator receiver domain OM954_15615 PF17149 Periplasmic sensor domain found in signal transduction proteins OM954_15615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_15615 PF00672 HAMP domain OM954_15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_15625 PF00512 His Kinase A (phospho-acceptor) domain OM954_15625 PF01627 Hpt domain OM954_15625 PF00072 Response regulator receiver domain OM954_15630 PF04264 YceI-like domain OM954_15650 PF03315 Serine dehydratase beta chain OM954_15650 PF03313 Serine dehydratase alpha chain OM954_15655 PF00553 Cellulose binding domain OM954_15655 PF00041 Fibronectin type III domain OM954_15655 PF00704 Glycosyl hydrolases family 18 OM954_15660 PF00696 Amino acid kinase family OM954_15660 PF00742 Homoserine dehydrogenase OM954_15660 PF03447 Homoserine dehydrogenase, NAD binding domain OM954_15665 PF01053 Cys/Met metabolism PLP-dependent enzyme OM954_15670 PF00561 alpha/beta hydrolase fold OM954_15675 PF01476 LysM domain OM954_15675 PF01551 Peptidase family M23 OM954_15675 PF08525 Opacity-associated protein A N-terminal motif OM954_15680 PF00009 Elongation factor Tu GTP binding domain OM954_15680 PF16658 Class II release factor RF3, C-terminal domain OM954_15685 PF03006 Haemolysin-III related OM954_15690 PF05170 AsmA family OM954_15695 PF00571 CBS domain OM954_15695 PF00478 IMP dehydrogenase / GMP reductase domain OM954_15700 PF00535 Glycosyl transferase family 2 OM954_15705 PF00912 Transglycosylase OM954_15710 PF01430 Hsp33 protein OM954_15720 PF07715 TonB-dependent Receptor Plug Domain OM954_15720 PF00593 TonB dependent receptor OM954_15725 PF00440 Bacterial regulatory proteins, tetR family OM954_15735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OM954_15735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OM954_15735 PF09317 Domain of unknown function (DUF1974) OM954_15760 PF00872 Transposase, Mutator family OM954_15785 PF01597 Glycine cleavage H-protein OM954_15790 PF01571 Aminomethyltransferase folate-binding domain OM954_15790 PF08669 Glycine cleavage T-protein C-terminal barrel domain OM954_15800 PF01145 SPFH domain / Band 7 family OM954_15800 PF16200 C-terminal region of band_7 OM954_15805 PF02694 Uncharacterised BCR, YnfA/UPF0060 family OM954_15810 PF03819 MazG nucleotide pyrophosphohydrolase domain OM954_15815 PF00459 Inositol monophosphatase family OM954_15820 PF00293 NUDIX domain OM954_15825 PF00202 Aminotransferase class-III OM954_15830 PF04452 RNA methyltransferase OM954_15835 PF02685 Glucokinase OM954_15860 PF00704 Glycosyl hydrolases family 18 OM954_15860 PF01476 LysM domain OM954_15865 PF00728 Glycosyl hydrolase family 20, catalytic domain OM954_15865 PF07691 PA14 domain OM954_15865 PF02838 Glycosyl hydrolase family 20, domain 2 OM954_15875 PF07691 PA14 domain OM954_15875 PF14310 Fibronectin type III-like domain OM954_15875 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_15875 PF01915 Glycosyl hydrolase family 3 C-terminal domain OM954_15900 PF01301 Glycosyl hydrolases family 35 OM954_15930 PF03932 CutC family OM954_15935 PF01112 Asparaginase OM954_15945 PF13302 Acetyltransferase (GNAT) domain OM954_15960 PF01584 CheW-like domain OM954_15960 PF01627 Hpt domain OM954_15960 PF00072 Response regulator receiver domain OM954_15960 PF02895 Signal transducing histidine kinase, homodimeric domain OM954_15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_15965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_15965 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term OM954_15975 PF00072 Response regulator receiver domain OM954_15980 PF00072 Response regulator receiver domain OM954_15985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain OM954_15985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain OM954_15995 PF03747 ADP-ribosylglycohydrolase OM954_16000 PF00814 Glycoprotease family OM954_16005 PF13307 Helicase C-terminal domain OM954_16005 PF04851 Type III restriction enzyme, res subunit OM954_16015 PF00905 Penicillin binding protein transpeptidase domain OM954_16015 PF14814 Bifunctional transglycosylase second domain OM954_16015 PF00912 Transglycosylase OM954_16020 PF00535 Glycosyl transferase family 2 OM954_16030 PF04607 Region found in RelA / SpoT proteins OM954_16030 PF02824 TGS domain OM954_16030 PF13291 ACT domain OM954_16040 PF12706 Beta-lactamase superfamily domain OM954_16045 PF03070 TENA/THI-4/PQQC family OM954_16050 PF05402 Coenzyme PQQ synthesis protein D (PqqD) OM954_16055 PF04055 Radical SAM superfamily OM954_16055 PF13186 Iron-sulfur cluster-binding domain OM954_16070 PF02685 Glucokinase OM954_16080 PF00872 Transposase, Mutator family OM954_16090 PF04408 Helicase associated domain (HA2) OM954_16090 PF00270 DEAD/DEAH box helicase OM954_16090 PF11898 Domain of unknown function (DUF3418) OM954_16090 PF00271 Helicase conserved C-terminal domain OM954_16090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold OM954_16095 PF00210 Ferritin-like domain OM954_16100 PF00570 HRDC domain OM954_16100 PF00271 Helicase conserved C-terminal domain OM954_16100 PF00270 DEAD/DEAH box helicase OM954_16100 PF16124 RecQ zinc-binding OM954_16100 PF09382 RQC domain OM954_16140 PF00672 HAMP domain OM954_16140 PF02203 Tar ligand binding domain homologue OM954_16140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_16145 PF01810 LysE type translocator OM954_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_16150 PF03466 LysR substrate binding domain OM954_16160 PF13426 PAS domain OM954_16160 PF13581 Histidine kinase-like ATPase domain OM954_16160 PF07536 HWE histidine kinase OM954_16165 PF06508 Queuosine biosynthesis protein QueC OM954_16175 PF04055 Radical SAM superfamily OM954_16185 PF00691 OmpA family OM954_16190 PF07676 WD40-like Beta Propeller Repeat OM954_16190 PF04052 TolB amino-terminal domain OM954_16200 PF02472 Biopolymer transport protein ExbD/TolR OM954_16205 PF01618 MotA/TolQ/ExbB proton channel family OM954_16210 PF03061 Thioesterase superfamily OM954_16215 PF17864 RuvB AAA lid domain OM954_16215 PF05491 RuvB C-terminal winged helix domain OM954_16215 PF05496 Holliday junction DNA helicase RuvB P-loop domain OM954_16225 PF02705 K+ potassium transporter OM954_16230 PF01330 RuvA N terminal domain OM954_16230 PF07499 RuvA, C-terminal domain OM954_16235 PF02075 Crossover junction endodeoxyribonuclease RuvC OM954_16240 PF01709 Transcriptional regulator OM954_16255 PF00152 tRNA synthetases class II (D, K and N) OM954_16255 PF01336 OB-fold nucleic acid binding domain OM954_16255 PF02938 GAD domain OM954_16270 PF07690 Major Facilitator Superfamily OM954_16280 PF04185 Phosphoesterase family OM954_16280 PF05506 Domain of unknown function (DUF756) OM954_16290 PF07859 alpha/beta hydrolase fold OM954_16290 PF13472 GDSL-like Lipase/Acylhydrolase family OM954_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_16300 PF03466 LysR substrate binding domain OM954_16310 PF00005 ABC transporter OM954_16310 PF12848 ABC transporter OM954_16315 PF00593 TonB dependent receptor OM954_16315 PF07715 TonB-dependent Receptor Plug Domain OM954_16325 PF07715 TonB-dependent Receptor Plug Domain OM954_16325 PF00593 TonB dependent receptor OM954_16330 PF07715 TonB-dependent Receptor Plug Domain OM954_16330 PF00593 TonB dependent receptor OM954_16375 PF07715 TonB-dependent Receptor Plug Domain OM954_16375 PF07660 Secretin and TonB N terminus short domain OM954_16375 PF00593 TonB dependent receptor OM954_16385 PF04183 IucA / IucC family OM954_16385 PF06276 Ferric iron reductase FhuF-like transporter OM954_16390 PF07690 Major Facilitator Superfamily OM954_16395 PF06276 Ferric iron reductase FhuF-like transporter OM954_16395 PF04183 IucA / IucC family OM954_16400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain OM954_16400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain OM954_16420 PF02654 Cobalamin-5-phosphate synthase OM954_16430 PF02277 Phosphoribosyltransferase OM954_16435 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase OM954_16440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain OM954_16440 PF07685 CobB/CobQ-like glutamine amidotransferase domain OM954_16445 PF00155 Aminotransferase class I and II OM954_16450 PF17113 Regulatory signalling modulator protein AmpE OM954_16450 PF03186 CobD/Cbib protein OM954_16455 PF12557 Cob(I)alamin adenosyltransferase N terminal OM954_16455 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP OM954_16475 PF07715 TonB-dependent Receptor Plug Domain OM954_16475 PF00593 TonB dependent receptor OM954_16485 PF00004 ATPase family associated with various cellular activities (AAA) OM954_16485 PF07724 AAA domain (Cdc48 subfamily) OM954_16485 PF17871 AAA lid domain OM954_16485 PF02861 Clp amino terminal domain, pathogenicity island component OM954_16485 PF10431 C-terminal, D2-small domain, of ClpB protein OM954_16490 PF01541 GIY-YIG catalytic domain OM954_16525 PF00593 TonB dependent receptor OM954_16525 PF07715 TonB-dependent Receptor Plug Domain OM954_16530 PF02358 Trehalose-phosphatase OM954_16535 PF00723 Glycosyl hydrolases family 15 OM954_16540 PF00982 Glycosyltransferase family 20 OM954_16545 PF01011 PQQ enzyme repeat OM954_16555 PF02203 Tar ligand binding domain homologue OM954_16555 PF00672 HAMP domain OM954_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_16560 PF04134 Protein of unknown function, DUF393 OM954_16570 PF02578 Multi-copper polyphenol oxidoreductase laccase OM954_16575 PF00849 RNA pseudouridylate synthase OM954_16580 PF13525 Outer membrane lipoprotein OM954_16590 PF00795 Carbon-nitrogen hydrolase OM954_16590 PF02540 NAD synthase OM954_16605 PF02629 CoA binding domain OM954_16605 PF00549 CoA-ligase OM954_16610 PF00549 CoA-ligase OM954_16610 PF08442 ATP-grasp domain OM954_16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_16615 PF00512 His Kinase A (phospho-acceptor) domain OM954_16620 PF02954 Bacterial regulatory protein, Fis family OM954_16620 PF00072 Response regulator receiver domain OM954_16620 PF00158 Sigma-54 interaction domain OM954_16630 PF00437 Type II/IV secretion system protein OM954_16630 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OM954_16635 PF00437 Type II/IV secretion system protein OM954_16635 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OM954_16640 PF07963 Prokaryotic N-terminal methylation motif OM954_16640 PF00114 Pilin (bacterial filament) OM954_16645 PF07963 Prokaryotic N-terminal methylation motif OM954_16645 PF00114 Pilin (bacterial filament) OM954_16650 PF00872 Transposase, Mutator family OM954_16655 PF00482 Type II secretion system (T2SS), protein F OM954_16660 PF06750 Bacterial Peptidase A24 N-terminal domain OM954_16660 PF01478 Type IV leader peptidase family OM954_16665 PF01121 Dephospho-CoA kinase OM954_16685 PF11808 Phosphate regulon sensor protein PhoR OM954_16685 PF00512 His Kinase A (phospho-acceptor) domain OM954_16685 PF00989 PAS fold OM954_16685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_16690 PF00072 Response regulator receiver domain OM954_16690 PF00486 Transcriptional regulatory protein, C terminal OM954_16700 PF08443 RimK-like ATP-grasp domain OM954_16700 PF18030 RimK PreATP-grasp domain OM954_16705 PF00128 Alpha amylase, catalytic domain OM954_16705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) OM954_16730 PF13276 HTH-like domain OM954_16730 PF00665 Integrase core domain OM954_16730 PF13333 Integrase core domain OM954_16745 PF04002 RadC-like JAB domain OM954_16770 PF00872 Transposase, Mutator family OM954_16830 PF18273 Type III R-M EcoP15I C-terminal domain OM954_16830 PF01555 DNA methylase OM954_16850 PF04002 RadC-like JAB domain OM954_16910 PF03797 Autotransporter beta-domain OM954_16910 PF00657 GDSL-like Lipase/Acylhydrolase OM954_16920 PF05690 Thiazole biosynthesis protein ThiG OM954_16925 PF02390 Putative methyltransferase OM954_16930 PF02080 TrkA-C domain OM954_16930 PF03600 Citrate transporter OM954_16950 PF01557 Fumarylacetoacetate (FAA) hydrolase family OM954_16955 PF01741 Large-conductance mechanosensitive channel, MscL OM954_16965 PF00356 Bacterial regulatory proteins, lacI family OM954_16975 PF00703 Glycosyl hydrolases family 2 OM954_16975 PF02837 Glycosyl hydrolases family 2, sugar binding domain OM954_16975 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain OM954_16980 PF10566 Glycoside hydrolase 97 OM954_16980 PF14508 Glycosyl-hydrolase 97 N-terminal OM954_16980 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation OM954_16985 PF00135 Carboxylesterase family OM954_16990 PF08032 RNA 2'-O ribose methyltransferase substrate binding OM954_16990 PF00588 SpoU rRNA Methylase family OM954_17000 PF01433 Peptidase family M1 domain OM954_17000 PF11838 ERAP1-like C-terminal domain OM954_17005 PF00873 AcrB/AcrD/AcrF family OM954_17010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_17010 PF00529 HlyD membrane-fusion protein of T1SS OM954_17015 PF00009 Elongation factor Tu GTP binding domain OM954_17020 PF01507 Phosphoadenosine phosphosulfate reductase family OM954_17025 PF00175 Oxidoreductase NAD-binding domain OM954_17025 PF00258 Flavodoxin OM954_17025 PF00667 FAD binding domain OM954_17030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain OM954_17030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain OM954_17035 PF01507 Phosphoadenosine phosphosulfate reductase family OM954_17055 PF00072 Response regulator receiver domain OM954_17055 PF01627 Hpt domain OM954_17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_17055 PF00512 His Kinase A (phospho-acceptor) domain OM954_17065 PF03466 LysR substrate binding domain OM954_17065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_17070 PF14824 Sirohaem biosynthesis protein central OM954_17070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OM954_17070 PF10414 Sirohaem synthase dimerisation region OM954_17075 PF00291 Pyridoxal-phosphate dependent enzyme OM954_17085 PF01661 Macro domain OM954_17090 PF00274 Fructose-bisphosphate aldolase class-I OM954_17095 PF02887 Pyruvate kinase, alpha/beta domain OM954_17095 PF00224 Pyruvate kinase, barrel domain OM954_17100 PF13419 Haloacid dehalogenase-like hydrolase OM954_17105 PF00162 Phosphoglycerate kinase OM954_17135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain OM954_17135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain OM954_17145 PF03922 OmpW family OM954_17160 PF04273 Putative phosphatase (DUF442) OM954_17160 PF00753 Metallo-beta-lactamase superfamily OM954_17170 PF00528 Binding-protein-dependent transport system inner membrane component OM954_17175 PF03459 TOBE domain OM954_17175 PF00005 ABC transporter OM954_17195 PF08521 Two-component sensor kinase N-terminal OM954_17195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_17195 PF00512 His Kinase A (phospho-acceptor) domain OM954_17200 PF00072 Response regulator receiver domain OM954_17200 PF00486 Transcriptional regulatory protein, C terminal OM954_17220 PF00501 AMP-binding enzyme OM954_17245 PF03734 L,D-transpeptidase catalytic domain OM954_17245 PF01476 LysM domain OM954_17250 PF01551 Peptidase family M23 OM954_17250 PF04225 Opacity-associated protein A LysM-like domain OM954_17255 PF07715 TonB-dependent Receptor Plug Domain OM954_17255 PF00593 TonB dependent receptor OM954_17270 PF00456 Transketolase, thiamine diphosphate binding domain OM954_17270 PF02779 Transketolase, pyrimidine binding domain OM954_17270 PF02780 Transketolase, C-terminal domain OM954_17275 PF00375 Sodium:dicarboxylate symporter family OM954_17285 PF07584 Aerotolerance regulator N-terminal OM954_17285 PF00092 von Willebrand factor type A domain OM954_17305 PF07726 ATPase family associated with various cellular activities (AAA) OM954_17305 PF17863 AAA lid domain OM954_17310 PF03958 Bacterial type II/III secretion system short domain OM954_17310 PF07660 Secretin and TonB N terminus short domain OM954_17310 PF11741 AMIN domain OM954_17310 PF00263 Bacterial type II and III secretion system protein OM954_17315 PF04351 Pilus assembly protein, PilP OM954_17320 PF04350 Pilus assembly protein, PilO OM954_17325 PF05137 Fimbrial assembly protein (PilN) OM954_17330 PF11104 Type IV pilus assembly protein PilM; OM954_17335 PF17092 Penicillin-binding protein OB-like domain OM954_17335 PF00912 Transglycosylase OM954_17335 PF00905 Penicillin binding protein transpeptidase domain OM954_17345 PF00285 Citrate synthase, C-terminal domain OM954_17350 PF01197 Ribosomal protein L31 OM954_17355 PF01156 Inosine-uridine preferring nucleoside hydrolase OM954_17360 PF00270 DEAD/DEAH box helicase OM954_17360 PF00271 Helicase conserved C-terminal domain OM954_17360 PF17191 RecG wedge domain OM954_17365 PF01042 Endoribonuclease L-PSP OM954_17370 PF04607 Region found in RelA / SpoT proteins OM954_17370 PF02824 TGS domain OM954_17370 PF13291 ACT domain OM954_17375 PF01192 RNA polymerase Rpb6 OM954_17380 PF00625 Guanylate kinase OM954_17385 PF08340 Domain of unknown function (DUF1732) OM954_17385 PF03755 YicC-like family, N-terminal region OM954_17390 PF01138 3' exoribonuclease family, domain 1 OM954_17390 PF03725 3' exoribonuclease family, domain 2 OM954_17400 PF01725 Ham1 family OM954_17405 PF06969 HemN C-terminal domain OM954_17405 PF04055 Radical SAM superfamily OM954_17420 PF00557 Metallopeptidase family M24 OM954_17430 PF05195 Aminopeptidase P, N-terminal domain OM954_17430 PF00557 Metallopeptidase family M24 OM954_17435 PF03695 Uncharacterised protein family (UPF0149) OM954_17445 PF05164 Cell division protein ZapA OM954_17455 PF01812 5-formyltetrahydrofolate cyclo-ligase family OM954_17465 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) OM954_17475 PF13369 Transglutaminase-like superfamily OM954_17480 PF00301 Rubredoxin OM954_17485 PF02581 Thiamine monophosphate synthase OM954_17505 PF00202 Aminotransferase class-III OM954_17510 PF00196 Bacterial regulatory proteins, luxR family OM954_17510 PF17874 MalT-like TPR region OM954_17515 PF00127 Copper binding proteins, plastocyanin/azurin family OM954_17520 PF00155 Aminotransferase class I and II OM954_17530 PF00034 Cytochrome c OM954_17530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III OM954_17535 PF01593 Flavin containing amine oxidoreductase OM954_17550 PF00202 Aminotransferase class-III OM954_17555 PF00520 Ion transport protein OM954_17555 PF00027 Cyclic nucleotide-binding domain OM954_17570 PF01569 PAP2 superfamily OM954_17580 PF01062 Bestrophin, RFP-TM, chloride channel OM954_17590 PF08245 Mur ligase middle domain OM954_17590 PF01225 Mur ligase family, catalytic domain OM954_17590 PF02875 Mur ligase family, glutamate ligase domain OM954_17600 PF00365 Phosphofructokinase OM954_17610 PF03030 Inorganic H+ pyrophosphatase OM954_17620 PF00719 Inorganic pyrophosphatase OM954_17630 PF00593 TonB dependent receptor OM954_17630 PF07715 TonB-dependent Receptor Plug Domain OM954_17635 PF12833 Helix-turn-helix domain OM954_17640 PF00486 Transcriptional regulatory protein, C terminal OM954_17640 PF18500 CadC C-terminal domain 1 OM954_17645 PF01964 Radical SAM ThiC family OM954_17645 PF13667 ThiC-associated domain OM954_17650 PF00593 TonB dependent receptor OM954_17650 PF07715 TonB-dependent Receptor Plug Domain OM954_17655 PF02203 Tar ligand binding domain homologue OM954_17655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OM954_17655 PF00672 HAMP domain OM954_17665 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain OM954_17665 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain OM954_17670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain OM954_17670 PF00205 Thiamine pyrophosphate enzyme, central domain OM954_17670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OM954_17680 PF00291 Pyridoxal-phosphate dependent enzyme OM954_17685 PF08502 LeuA allosteric (dimerisation) domain OM954_17685 PF00682 HMGL-like OM954_17690 PF00180 Isocitrate/isopropylmalate dehydrogenase OM954_17695 PF00694 Aconitase C-terminal domain OM954_17700 PF00330 Aconitase family (aconitate hydratase) OM954_17705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_17725 PF02321 Outer membrane efflux protein OM954_17730 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) OM954_17735 PF03279 Bacterial lipid A biosynthesis acyltransferase OM954_17760 PF01515 Phosphate acetyl/butaryl transferase OM954_17760 PF00390 Malic enzyme, N-terminal domain OM954_17760 PF03949 Malic enzyme, NAD binding domain OM954_17765 PF00375 Sodium:dicarboxylate symporter family OM954_17775 PF02743 Cache domain OM954_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_17775 PF00512 His Kinase A (phospho-acceptor) domain OM954_17780 PF07690 Major Facilitator Superfamily OM954_17790 PF03466 LysR substrate binding domain OM954_17790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_17795 PF00248 Aldo/keto reductase family OM954_17810 PF00072 Response regulator receiver domain OM954_17810 PF00196 Bacterial regulatory proteins, luxR family OM954_17820 PF08521 Two-component sensor kinase N-terminal OM954_17820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_17820 PF00512 His Kinase A (phospho-acceptor) domain OM954_17825 PF00072 Response regulator receiver domain OM954_17825 PF00486 Transcriptional regulatory protein, C terminal OM954_17835 PF03600 Citrate transporter OM954_17840 PF00106 short chain dehydrogenase OM954_17845 PF00356 Bacterial regulatory proteins, lacI family OM954_17860 PF00128 Alpha amylase, catalytic domain OM954_17875 PF03193 RsgA GTPase OM954_17880 PF00155 Aminotransferase class I and II OM954_17895 PF01522 Polysaccharide deacetylase OM954_17900 PF00462 Glutaredoxin OM954_17915 PF01979 Amidohydrolase family OM954_17920 PF01979 Amidohydrolase family OM954_17945 PF00872 Transposase, Mutator family OM954_17955 PF02645 Uncharacterised protein, DegV family COG1307 OM954_17970 PF13333 Integrase core domain OM954_17970 PF00665 Integrase core domain OM954_17970 PF13276 HTH-like domain OM954_17975 PF00756 Putative esterase OM954_17980 PF04828 Glutathione-dependent formaldehyde-activating enzyme OM954_17985 PF08240 Alcohol dehydrogenase GroES-like domain OM954_17985 PF00107 Zinc-binding dehydrogenase OM954_17990 PF02583 Metal-sensitive transcriptional repressor OM954_18005 PF00486 Transcriptional regulatory protein, C terminal OM954_18005 PF00072 Response regulator receiver domain OM954_18010 PF00512 His Kinase A (phospho-acceptor) domain OM954_18010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_18010 PF00672 HAMP domain OM954_18015 PF04107 Glutamate-cysteine ligase family 2(GCS2) OM954_18025 PF01926 50S ribosome-binding GTPase OM954_18030 PF00034 Cytochrome c OM954_18040 PF01323 DSBA-like thioredoxin domain OM954_18050 PF02028 BCCT, betaine/carnitine/choline family transporter OM954_18055 PF00171 Aldehyde dehydrogenase family OM954_18060 PF00732 GMC oxidoreductase OM954_18060 PF05199 GMC oxidoreductase OM954_18065 PF00544 Pectate lyase OM954_18085 PF01066 CDP-alcohol phosphatidyltransferase OM954_18095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OM954_18095 PF04073 Aminoacyl-tRNA editing domain OM954_18095 PF03129 Anticodon binding domain OM954_18100 PF00816 H-NS histone family OM954_18110 PF02405 Permease MlaE OM954_18115 PF00005 ABC transporter OM954_18120 PF03886 ABC-type transport auxiliary lipoprotein component OM954_18120 PF02470 MlaD protein OM954_18140 PF01144 Coenzyme A transferase OM954_18145 PF01144 Coenzyme A transferase OM954_18150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OM954_18150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OM954_18150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OM954_18150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OM954_18155 PF01050 Mannose-6-phosphate isomerase OM954_18155 PF00483 Nucleotidyl transferase OM954_18160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain OM954_18160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OM954_18160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OM954_18165 PF04321 RmlD substrate binding domain OM954_18170 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase OM954_18175 PF00483 Nucleotidyl transferase OM954_18180 PF16363 GDP-mannose 4,6 dehydratase OM954_18185 PF01012 Electron transfer flavoprotein domain OM954_18190 PF01012 Electron transfer flavoprotein domain OM954_18190 PF00766 Electron transfer flavoprotein FAD-binding domain OM954_18200 PF01040 UbiA prenyltransferase family OM954_18205 PF04030 D-arabinono-1,4-lactone oxidase OM954_18205 PF01565 FAD binding domain OM954_18210 PF00106 short chain dehydrogenase OM954_18215 PF01370 NAD dependent epimerase/dehydratase family OM954_18220 PF01593 Flavin containing amine oxidoreductase OM954_18250 PF00872 Transposase, Mutator family OM954_18255 PF01370 NAD dependent epimerase/dehydratase family OM954_18260 PF16363 GDP-mannose 4,6 dehydratase OM954_18265 PF00534 Glycosyl transferases group 1 OM954_18265 PF13477 Glycosyl transferase 4-like OM954_18270 PF13847 Methyltransferase domain OM954_18270 PF00069 Protein kinase domain OM954_18275 PF13847 Methyltransferase domain OM954_18275 PF00069 Protein kinase domain OM954_18280 PF00005 ABC transporter OM954_18290 PF13439 Glycosyltransferase Family 4 OM954_18290 PF00534 Glycosyl transferases group 1 OM954_18295 PF01053 Cys/Met metabolism PLP-dependent enzyme OM954_18300 PF00571 CBS domain OM954_18300 PF00291 Pyridoxal-phosphate dependent enzyme OM954_18320 PF00437 Type II/IV secretion system protein OM954_18325 PF02798 Glutathione S-transferase, N-terminal domain OM954_18325 PF14497 Glutathione S-transferase, C-terminal domain OM954_18335 PF00271 Helicase conserved C-terminal domain OM954_18335 PF00270 DEAD/DEAH box helicase OM954_18340 PF01242 6-pyruvoyl tetrahydropterin synthase OM954_18360 PF13185 GAF domain OM954_18370 PF13419 Haloacid dehalogenase-like hydrolase OM954_18375 PF00817 impB/mucB/samB family OM954_18375 PF11799 impB/mucB/samB family C-terminal domain OM954_18380 PF07977 FabA-like domain OM954_18385 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_18385 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_18390 PF08239 Bacterial SH3 domain OM954_18400 PF01432 Peptidase family M3 OM954_18415 PF07731 Multicopper oxidase OM954_18415 PF00394 Multicopper oxidase OM954_18415 PF07732 Multicopper oxidase OM954_18420 PF05275 Copper resistance protein B precursor (CopB) OM954_18425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OM954_18450 PF01380 SIS domain OM954_18455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_18460 PF00005 ABC transporter OM954_18465 PF12704 MacB-like periplasmic core domain OM954_18465 PF00005 ABC transporter OM954_18465 PF02687 FtsX-like permease family OM954_18470 PF02687 FtsX-like permease family OM954_18470 PF12704 MacB-like periplasmic core domain OM954_18470 PF00005 ABC transporter OM954_18480 PF00072 Response regulator receiver domain OM954_18480 PF00158 Sigma-54 interaction domain OM954_18480 PF02954 Bacterial regulatory protein, Fis family OM954_18485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_18485 PF00512 His Kinase A (phospho-acceptor) domain OM954_18490 PF00132 Bacterial transferase hexapeptide (six repeats) OM954_18490 PF14602 Hexapeptide repeat of succinyl-transferase OM954_18490 PF12804 MobA-like NTP transferase domain OM954_18510 PF01817 Chorismate mutase type II OM954_18515 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain OM954_18515 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain OM954_18520 PF02874 ATP synthase alpha/beta family, beta-barrel domain OM954_18520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_18525 PF00231 ATP synthase OM954_18530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_18530 PF00306 ATP synthase alpha/beta chain, C terminal domain OM954_18530 PF02874 ATP synthase alpha/beta family, beta-barrel domain OM954_18535 PF00213 ATP synthase delta (OSCP) subunit OM954_18540 PF00430 ATP synthase B/B' CF(0) OM954_18545 PF00137 ATP synthase subunit C OM954_18550 PF00119 ATP synthase A chain OM954_18570 PF07992 Pyridine nucleotide-disulphide oxidoreductase OM954_18570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OM954_18580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OM954_18580 PF02817 e3 binding domain OM954_18580 PF00364 Biotin-requiring enzyme OM954_18610 PF03180 NLPA lipoprotein OM954_18615 PF00528 Binding-protein-dependent transport system inner membrane component OM954_18620 PF09383 NIL domain OM954_18620 PF00005 ABC transporter OM954_18625 PF00892 EamA-like transporter family OM954_18630 PF04461 Protein of unknown function (DUF520) OM954_18640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_18640 PF00512 His Kinase A (phospho-acceptor) domain OM954_18640 PF01627 Hpt domain OM954_18640 PF00072 Response regulator receiver domain OM954_18640 PF00989 PAS fold OM954_18640 PF18415 Histidine kinase receptor ArcB trans-membrane domain OM954_18665 PF13419 Haloacid dehalogenase-like hydrolase OM954_18670 PF00849 RNA pseudouridylate synthase OM954_18670 PF01479 S4 domain OM954_18675 PF05175 Methyltransferase small domain OM954_18675 PF08468 Methyltransferase small domain N-terminal OM954_18690 PF05598 Transposase domain (DUF772) OM954_18690 PF01609 Transposase DDE domain OM954_18695 PF00872 Transposase, Mutator family OM954_18700 PF07995 Glucose / Sorbosone dehydrogenase OM954_18710 PF00989 PAS fold OM954_18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_18710 PF00512 His Kinase A (phospho-acceptor) domain OM954_18730 PF00842 Alanine racemase, C-terminal domain OM954_18730 PF01168 Alanine racemase, N-terminal domain OM954_18735 PF01266 FAD dependent oxidoreductase OM954_18740 PF01037 Lrp/AsnC ligand binding domain OM954_18750 PF01641 SelR domain OM954_18760 PF01618 MotA/TolQ/ExbB proton channel family OM954_18765 PF13677 Membrane MotB of proton-channel complex MotA/MotB OM954_18765 PF00691 OmpA family OM954_18790 PF01061 ABC-2 type transporter OM954_18795 PF00005 ABC transporter OM954_18800 PF00999 Sodium/hydrogen exchanger family OM954_18805 PF02469 Fasciclin domain OM954_18810 PF03167 Uracil DNA glycosylase superfamily OM954_18820 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase OM954_18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_18830 PF03466 LysR substrate binding domain OM954_18835 PF03358 NADPH-dependent FMN reductase OM954_18840 PF00248 Aldo/keto reductase family OM954_18855 PF01431 Peptidase family M13 OM954_18855 PF05649 Peptidase family M13 OM954_18870 PF13520 Amino acid permease OM954_18880 PF04397 LytTr DNA-binding domain OM954_18880 PF00072 Response regulator receiver domain OM954_18885 PF06580 Histidine kinase OM954_18885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_18885 PF02743 Cache domain OM954_18885 PF00672 HAMP domain OM954_18900 PF05974 Domain of unknown function (DUF892) OM954_18905 PF05067 Manganese containing catalase OM954_18925 PF08448 PAS fold OM954_18925 PF03705 CheR methyltransferase, all-alpha domain OM954_18925 PF01339 CheB methylesterase OM954_18925 PF01739 CheR methyltransferase, SAM binding domain OM954_18940 PF00158 Sigma-54 interaction domain OM954_18940 PF00072 Response regulator receiver domain OM954_18940 PF02954 Bacterial regulatory protein, Fis family OM954_18955 PF01654 Cytochrome bd terminal oxidase subunit I OM954_18960 PF02322 Cytochrome bd terminal oxidase subunit II OM954_18995 PF08240 Alcohol dehydrogenase GroES-like domain OM954_18995 PF13823 Alcohol dehydrogenase GroES-associated OM954_18995 PF00107 Zinc-binding dehydrogenase OM954_19005 PF00872 Transposase, Mutator family OM954_19060 PF00005 ABC transporter OM954_19070 PF03466 LysR substrate binding domain OM954_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_19075 PF01042 Endoribonuclease L-PSP OM954_19105 PF01740 STAS domain OM954_19105 PF00916 Sulfate permease family OM954_19110 PF00654 Voltage gated chloride channel OM954_19120 PF00557 Metallopeptidase family M24 OM954_19130 PF03466 LysR substrate binding domain OM954_19130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_19155 PF03979 Sigma-70 factor, region 1.1 OM954_19155 PF04545 Sigma-70, region 4 OM954_19155 PF04546 Sigma-70, non-essential region OM954_19155 PF04542 Sigma-70 region 2 OM954_19155 PF00140 Sigma-70 factor, region 1.2 OM954_19155 PF04539 Sigma-70 region 3 OM954_19160 PF02580 D-Tyr-tRNA(Tyr) deacylase OM954_19165 PF03279 Bacterial lipid A biosynthesis acyltransferase OM954_19175 PF00925 GTP cyclohydrolase II OM954_19195 PF00535 Glycosyl transferase family 2 OM954_19210 PF01189 16S rRNA methyltransferase RsmB/F OM954_19210 PF01029 NusB family OM954_19215 PF00551 Formyl transferase OM954_19215 PF02911 Formyl transferase, C-terminal domain OM954_19220 PF01327 Polypeptide deformylase OM954_19225 PF01476 LysM domain OM954_19230 PF02481 DNA recombination-mediator protein A OM954_19230 PF17782 DprA winged helix domain OM954_19240 PF07963 Prokaryotic N-terminal methylation motif OM954_19240 PF00114 Pilin (bacterial filament) OM954_19250 PF01131 DNA topoisomerase OM954_19250 PF01751 Toprim domain OM954_19250 PF13368 Topoisomerase C-terminal repeat OM954_19255 PF01300 Telomere recombination OM954_19280 PF01343 Peptidase family S49 OM954_19285 PF01554 MatE OM954_19305 PF00270 DEAD/DEAH box helicase OM954_19305 PF17764 3′ DNA-binding domain (3′BD) OM954_19305 PF18074 Primosomal protein N C-terminal domain OM954_19305 PF18319 PriA DNA helicase Cys-rich region (CRR) domain OM954_19305 PF00271 Helicase conserved C-terminal domain OM954_19310 PF00043 Glutathione S-transferase, C-terminal domain OM954_19310 PF13417 Glutathione S-transferase, N-terminal domain OM954_19330 PF03458 UPF0126 domain OM954_19335 PF04542 Sigma-70 region 2 OM954_19335 PF04545 Sigma-70, region 4 OM954_19340 PF03167 Uracil DNA glycosylase superfamily OM954_19345 PF00072 Response regulator receiver domain OM954_19345 PF01339 CheB methylesterase OM954_19350 PF18075 FtsX extracellular domain OM954_19355 PF00005 ABC transporter OM954_19360 PF00270 DEAD/DEAH box helicase OM954_19360 PF00271 Helicase conserved C-terminal domain OM954_19360 PF12300 ATP-dependent RNA helicase RhlB OM954_19365 PF00085 Thioredoxin OM954_19370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_19370 PF07498 Rho termination factor, N-terminal domain OM954_19370 PF07497 Rho termination factor, RNA-binding domain OM954_19380 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) OM954_19395 PF03971 Monomeric isocitrate dehydrogenase OM954_19405 PF01476 LysM domain OM954_19405 PF04972 BON domain OM954_19410 PF14489 QueF-like protein OM954_19410 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term OM954_19415 PF07687 Peptidase dimerisation domain OM954_19415 PF01546 Peptidase family M20/M25/M40 OM954_19420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_19425 PF00873 AcrB/AcrD/AcrF family OM954_19430 PF00873 AcrB/AcrD/AcrF family OM954_19445 PF07063 Domain of unknown function (DUF1338) OM954_19485 PF01427 D-ala-D-ala dipeptidase OM954_19490 PF01510 N-acetylmuramoyl-L-alanine amidase OM954_19510 PF13520 Amino acid permease OM954_19530 PF00872 Transposase, Mutator family OM954_19540 PF07995 Glucose / Sorbosone dehydrogenase OM954_19545 PF01915 Glycosyl hydrolase family 3 C-terminal domain OM954_19545 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_19545 PF14310 Fibronectin type III-like domain OM954_19550 PF02152 Dihydroneopterin aldolase OM954_19555 PF00814 Glycoprotease family OM954_19565 PF01165 Ribosomal protein S21 OM954_19570 PF09424 Yqey-like protein OM954_19575 PF03631 Virulence factor BrkB OM954_19580 PF01807 CHC2 zinc finger OM954_19580 PF08278 DNA primase DnaG DnaB-binding OM954_19580 PF10410 DnaB-helicase binding domain of primase OM954_19580 PF08275 DNA primase catalytic core, N-terminal domain OM954_19585 PF13593 SBF-like CPA transporter family (DUF4137) OM954_19595 PF01040 UbiA prenyltransferase family OM954_19620 PF00510 Cytochrome c oxidase subunit III OM954_19625 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 OM954_19635 PF00115 Cytochrome C and Quinol oxidase polypeptide I OM954_19640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain OM954_19640 PF02790 Cytochrome C oxidase subunit II, transmembrane domain OM954_19680 PF00579 tRNA synthetases class I (W and Y) OM954_19685 PF01551 Peptidase family M23 OM954_19685 PF04225 Opacity-associated protein A LysM-like domain OM954_19690 PF03702 Anhydro-N-acetylmuramic acid kinase OM954_19700 PF07690 Major Facilitator Superfamily OM954_19705 PF03372 Endonuclease/Exonuclease/phosphatase family OM954_19710 PF00156 Phosphoribosyl transferase domain OM954_19720 PF13614 AAA domain OM954_19725 PF17762 HTH domain found in ParB protein OM954_19725 PF02195 ParB-like nuclease domain OM954_19735 PF01370 NAD dependent epimerase/dehydratase family OM954_19740 PF00535 Glycosyl transferase family 2 OM954_19755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OM954_19755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OM954_19755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OM954_19755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OM954_19760 PF00692 dUTPase OM954_19765 PF02441 Flavoprotein OM954_19765 PF04127 DNA / pantothenate metabolism flavoprotein OM954_19770 PF04002 RadC-like JAB domain OM954_19775 PF00750 tRNA synthetases class I (R) OM954_19775 PF03485 Arginyl tRNA synthetase N terminal domain OM954_19775 PF05746 DALR anticodon binding domain OM954_19790 PF00106 short chain dehydrogenase OM954_19795 PF01757 Acyltransferase family OM954_19800 PF03033 Glycosyltransferase family 28 N-terminal domain OM954_19820 PF17944 Arginine decarboxylase C-terminal helical extension OM954_19820 PF17810 Arginine decarboxylase helical bundle domain OM954_19820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain OM954_19825 PF17284 Spermidine synthase tetramerisation domain OM954_19845 PF00963 Cohesin domain OM954_19845 PF00754 F5/8 type C domain OM954_19845 PF00041 Fibronectin type III domain OM954_19845 PF07555 beta-N-acetylglucosaminidase OM954_19845 PF02838 Glycosyl hydrolase family 20, domain 2 OM954_19850 PF00543 Nitrogen regulatory protein P-II OM954_19855 PF04380 Membrane fusogenic activity OM954_19860 PF01078 Magnesium chelatase, subunit ChlI OM954_19860 PF13335 Magnesium chelatase, subunit ChlI C-terminal OM954_19875 PF12792 CSS motif domain associated with EAL OM954_19875 PF00563 EAL domain OM954_19880 PF00487 Fatty acid desaturase OM954_19885 PF00175 Oxidoreductase NAD-binding domain OM954_19885 PF00970 Oxidoreductase FAD-binding domain OM954_19885 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_19890 PF00440 Bacterial regulatory proteins, tetR family OM954_19900 PF01139 tRNA-splicing ligase RtcB OM954_19940 PF01370 NAD dependent epimerase/dehydratase family OM954_19940 PF08338 Domain of unknown function (DUF1731) OM954_19945 PF00072 Response regulator receiver domain OM954_19945 PF00486 Transcriptional regulatory protein, C terminal OM954_19950 PF00512 His Kinase A (phospho-acceptor) domain OM954_19950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_19950 PF08521 Two-component sensor kinase N-terminal OM954_19970 PF00595 PDZ domain OM954_19990 PF01594 AI-2E family transporter OM954_19995 PF13419 Haloacid dehalogenase-like hydrolase OM954_20000 PF02789 Cytosol aminopeptidase family, N-terminal domain OM954_20000 PF00883 Cytosol aminopeptidase family, catalytic domain OM954_20010 PF08281 Sigma-70, region 4 OM954_20010 PF04542 Sigma-70 region 2 OM954_20015 PF00199 Catalase OM954_20030 PF00072 Response regulator receiver domain OM954_20030 PF00196 Bacterial regulatory proteins, luxR family OM954_20035 PF07730 Histidine kinase OM954_20040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_20045 PF00005 ABC transporter OM954_20070 PF00892 EamA-like transporter family OM954_20095 PF00753 Metallo-beta-lactamase superfamily OM954_20100 PF00579 tRNA synthetases class I (W and Y) OM954_20105 PF05532 CsbD-like OM954_20120 PF00491 Arginase family OM954_20145 PF02223 Thymidylate kinase OM954_20160 PF03309 Type III pantothenate kinase OM954_20165 PF02237 Biotin protein ligase C terminal domain OM954_20165 PF03099 Biotin/lipoate A/B protein ligase family OM954_20165 PF08279 HTH domain OM954_20175 PF06167 Glucose-regulated metallo-peptidase M90 OM954_20190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_20195 PF00072 Response regulator receiver domain OM954_20195 PF00486 Transcriptional regulatory protein, C terminal OM954_20205 PF01207 Dihydrouridine synthase (Dus) OM954_20225 PF00199 Catalase OM954_20225 PF06628 Catalase-related immune-responsive OM954_20250 PF00872 Transposase, Mutator family OM954_20260 PF00529 HlyD membrane-fusion protein of T1SS OM954_20260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_20265 PF06733 DEAD_2 OM954_20265 PF13307 Helicase C-terminal domain OM954_20280 PF18317 Shikimate 5'-dehydrogenase C-terminal domain OM954_20280 PF08501 Shikimate dehydrogenase substrate binding domain OM954_20280 PF01488 Shikimate / quinate 5-dehydrogenase OM954_20290 PF00258 Flavodoxin OM954_20290 PF00175 Oxidoreductase NAD-binding domain OM954_20290 PF00667 FAD binding domain OM954_20300 PF00490 Delta-aminolevulinic acid dehydratase OM954_20325 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region OM954_20325 PF00326 Prolyl oligopeptidase family OM954_20355 PF04820 Tryptophan halogenase OM954_20370 PF00005 ABC transporter OM954_20380 PF01381 Helix-turn-helix OM954_20390 PF01229 Glycosyl hydrolases family 39 OM954_20395 PF02583 Metal-sensitive transcriptional repressor OM954_20400 PF01545 Cation efflux family OM954_20405 PF00970 Oxidoreductase FAD-binding domain OM954_20405 PF00111 2Fe-2S iron-sulfur cluster binding domain OM954_20405 PF00175 Oxidoreductase NAD-binding domain OM954_20410 PF00005 ABC transporter OM954_20415 PF01061 ABC-2 type transporter OM954_20420 PF02558 Ketopantoate reductase PanE/ApbA OM954_20420 PF08546 Ketopantoate reductase PanE/ApbA C terminal OM954_20445 PF00085 Thioredoxin OM954_20465 PF00268 Ribonucleotide reductase, small chain OM954_20470 PF03477 ATP cone domain OM954_20470 PF02867 Ribonucleotide reductase, barrel domain OM954_20470 PF00317 Ribonucleotide reductase, all-alpha domain OM954_20485 PF13380 CoA binding domain OM954_20485 PF13607 Succinyl-CoA ligase like flavodoxin domain OM954_20485 PF00583 Acetyltransferase (GNAT) family OM954_20490 PF00571 CBS domain OM954_20490 PF01769 Divalent cation transporter OM954_20490 PF03448 MgtE intracellular N domain OM954_20495 PF00194 Eukaryotic-type carbonic anhydrase OM954_20500 PF00999 Sodium/hydrogen exchanger family OM954_20500 PF02254 TrkA-N domain OM954_20510 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain OM954_20510 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain OM954_20515 PF00723 Glycosyl hydrolases family 15 OM954_20530 PF05166 YcgL domain OM954_20535 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_20535 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_20545 PF00535 Glycosyl transferase family 2 OM954_20600 PF01553 Acyltransferase OM954_20610 PF00550 Phosphopantetheine attachment site OM954_20615 PF04820 Tryptophan halogenase OM954_20645 PF01218 Coproporphyrinogen III oxidase OM954_20650 PF01612 3'-5' exonuclease OM954_20650 PF00476 DNA polymerase family A OM954_20650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain OM954_20650 PF01367 5'-3' exonuclease, C-terminal SAM fold OM954_20660 PF06812 ImpA, N-terminal, type VI secretion system OM954_20680 PF00069 Protein kinase domain OM954_20705 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE OM954_20710 PF00248 Aldo/keto reductase family OM954_20715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_20715 PF03466 LysR substrate binding domain OM954_20730 PF04717 Type VI secretion system, phage-baseplate injector OM954_20760 PF04542 Sigma-70 region 2 OM954_20760 PF08281 Sigma-70, region 4 OM954_20780 PF03372 Endonuclease/Exonuclease/phosphatase family OM954_20790 PF01425 Amidase OM954_20815 PF00872 Transposase, Mutator family OM954_20835 PF17871 AAA lid domain OM954_20835 PF07724 AAA domain (Cdc48 subfamily) OM954_20835 PF00004 ATPase family associated with various cellular activities (AAA) OM954_20835 PF10431 C-terminal, D2-small domain, of ClpB protein OM954_20845 PF05947 Type VI secretion system, TssF OM954_20850 PF04965 Gene 25-like lysozyme OM954_20855 PF07024 ImpE protein OM954_20860 PF05638 Type VI secretion system effector, Hcp OM954_20865 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath OM954_20870 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 OM954_20885 PF12464 Maltose acetyltransferase OM954_20885 PF14602 Hexapeptide repeat of succinyl-transferase OM954_20895 PF13361 UvrD-like helicase C-terminal domain OM954_20895 PF00580 UvrD/REP helicase N-terminal domain OM954_20910 PF13091 PLD-like domain OM954_20910 PF13396 Phospholipase_D-nuclease N-terminal OM954_20915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_20915 PF03466 LysR substrate binding domain OM954_20920 PF03737 Aldolase/RraA OM954_20925 PF04303 PrpF protein OM954_20930 PF04909 Amidohydrolase OM954_20940 PF00830 Ribosomal L28 family OM954_20955 PF13533 Biotin-lipoyl like OM954_20975 PF02527 rRNA small subunit methyltransferase G OM954_20980 PF09423 PhoD-like phosphatase OM954_20980 PF16655 PhoD-like phosphatase, N-terminal domain OM954_20985 PF09423 PhoD-like phosphatase OM954_20985 PF16655 PhoD-like phosphatase, N-terminal domain OM954_20990 PF01648 4'-phosphopantetheinyl transferase superfamily OM954_20995 PF04226 Transglycosylase associated protein OM954_21005 PF03372 Endonuclease/Exonuclease/phosphatase family OM954_21010 PF00480 ROK family OM954_21030 PF00474 Sodium:solute symporter family OM954_21035 PF04341 Protein of unknown function, DUF485 OM954_21045 PF16177 Acetyl-coenzyme A synthetase N-terminus OM954_21045 PF00501 AMP-binding enzyme OM954_21045 PF13193 AMP-binding enzyme C-terminal domain OM954_21050 PF00072 Response regulator receiver domain OM954_21050 PF00196 Bacterial regulatory proteins, luxR family OM954_21080 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain OM954_21080 PF04616 Glycosyl hydrolases family 43 OM954_21090 PF00248 Aldo/keto reductase family OM954_21105 PF01557 Fumarylacetoacetate (FAA) hydrolase family OM954_21110 PF13378 Enolase C-terminal domain-like OM954_21110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain OM954_21115 PF05336 L-rhamnose mutarotase OM954_21120 PF07690 Major Facilitator Superfamily OM954_21125 PF01614 Bacterial transcriptional regulator OM954_21125 PF09339 IclR helix-turn-helix domain OM954_21130 PF12833 Helix-turn-helix domain OM954_21130 PF02311 AraC-like ligand binding domain OM954_21140 PF02659 Putative manganese efflux pump OM954_21145 PF00512 His Kinase A (phospho-acceptor) domain OM954_21145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_21155 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain OM954_21155 PF06165 Glycosyltransferase family 36 OM954_21170 PF01011 PQQ enzyme repeat OM954_21170 PF13360 PQQ-like domain OM954_21170 PF13570 PQQ-like domain OM954_21190 PF04357 TamB, inner membrane protein subunit of TAM complex OM954_21195 PF01103 Surface antigen OM954_21195 PF17243 POTRA domain TamA domain 1 OM954_21200 PF07715 TonB-dependent Receptor Plug Domain OM954_21200 PF00593 TonB dependent receptor OM954_21205 PF13181 Tetratricopeptide repeat OM954_21210 PF02092 Glycyl-tRNA synthetase beta subunit OM954_21210 PF05746 DALR anticodon binding domain OM954_21215 PF02091 Glycyl-tRNA synthetase alpha subunit OM954_21220 PF00437 Type II/IV secretion system protein OM954_21220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OM954_21235 PF00117 Glutamine amidotransferase class-I OM954_21235 PF00958 GMP synthase C terminal domain OM954_21250 PF00902 Sec-independent protein translocase protein (TatC) OM954_21255 PF02416 mttA/Hcf106 family OM954_21260 PF02416 mttA/Hcf106 family OM954_21270 PF00762 Ferrochelatase OM954_21275 PF12697 Alpha/beta hydrolase family OM954_21290 PF04381 Putative exonuclease, RdgC OM954_21295 PF01171 PP-loop family OM954_21305 PF00356 Bacterial regulatory proteins, lacI family OM954_21310 PF07477 Glycosyl hydrolase family 67 C-terminus OM954_21310 PF07488 Glycosyl hydrolase family 67 middle domain OM954_21310 PF03648 Glycosyl hydrolase family 67 N-terminus OM954_21320 PF13378 Enolase C-terminal domain-like OM954_21320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain OM954_21325 PF04616 Glycosyl hydrolases family 43 OM954_21325 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain OM954_21330 PF14310 Fibronectin type III-like domain OM954_21330 PF00933 Glycosyl hydrolase family 3 N terminal domain OM954_21330 PF01915 Glycosyl hydrolase family 3 C-terminal domain OM954_21330 PF07691 PA14 domain OM954_21335 PF01232 Mannitol dehydrogenase Rossmann domain OM954_21335 PF08125 Mannitol dehydrogenase C-terminal domain OM954_21375 PF00171 Aldehyde dehydrogenase family OM954_21390 PF00202 Aminotransferase class-III OM954_21400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain OM954_21400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain OM954_21415 PF08450 SMP-30/Gluconolactonase/LRE-like region OM954_21420 PF00331 Glycosyl hydrolase family 10 OM954_21425 PF02837 Glycosyl hydrolases family 2, sugar binding domain OM954_21425 PF02836 Glycosyl hydrolases family 2, TIM barrel domain OM954_21425 PF00703 Glycosyl hydrolases family 2 OM954_21425 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 OM954_21425 PF16355 Domain of unknown function (DUF4982) OM954_21430 PF02614 Glucuronate isomerase OM954_21435 PF00331 Glycosyl hydrolase family 10 OM954_21435 PF03422 Carbohydrate binding module (family 6) OM954_21435 PF00553 Cellulose binding domain OM954_21450 PF00553 Cellulose binding domain OM954_21450 PF00331 Glycosyl hydrolase family 10 OM954_21450 PF03422 Carbohydrate binding module (family 6) OM954_21470 PF04616 Glycosyl hydrolases family 43 OM954_21535 PF02801 Beta-ketoacyl synthase, C-terminal domain OM954_21535 PF08659 KR domain OM954_21535 PF16197 Ketoacyl-synthetase C-terminal extension OM954_21535 PF00107 Zinc-binding dehydrogenase OM954_21535 PF08240 Alcohol dehydrogenase GroES-like domain OM954_21535 PF00698 Acyl transferase domain OM954_21535 PF00550 Phosphopantetheine attachment site OM954_21535 PF14765 Polyketide synthase dehydratase OM954_21535 PF00109 Beta-ketoacyl synthase, N-terminal domain OM954_21545 PF01553 Acyltransferase OM954_21555 PF00356 Bacterial regulatory proteins, lacI family OM954_21570 PF04820 Tryptophan halogenase OM954_21575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family OM954_21580 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) OM954_21585 PF04337 Protein of unknown function, DUF480 OM954_21595 PF04055 Radical SAM superfamily OM954_21595 PF06969 HemN C-terminal domain OM954_21645 PF13361 UvrD-like helicase C-terminal domain OM954_21645 PF00580 UvrD/REP helicase N-terminal domain OM954_21650 PF00265 Thymidine kinase OM954_21655 PF00360 Phytochrome region OM954_21655 PF08446 PAS fold OM954_21655 PF00512 His Kinase A (phospho-acceptor) domain OM954_21655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OM954_21655 PF01590 GAF domain OM954_21660 PF04349 Periplasmic glucan biosynthesis protein, MdoG OM954_21670 PF06827 Zinc finger found in FPG and IleRS OM954_21670 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain OM954_21670 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain OM954_21700 PF03594 Benzoate membrane transport protein OM954_21705 PF01590 GAF domain OM954_21705 PF08446 PAS fold OM954_21705 PF13426 PAS domain OM954_21705 PF00360 Phytochrome region OM954_21710 PF01126 Heme oxygenase OM954_21715 PF07690 Major Facilitator Superfamily OM954_21725 PF01263 Aldose 1-epimerase OM954_21735 PF02810 SEC-C motif OM954_21775 PF00872 Transposase, Mutator family OM954_21800 PF00872 Transposase, Mutator family OM954_21825 PF01227 GTP cyclohydrolase I OM954_21835 PF07869 Protein of unknown function (DUF1656) OM954_21840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OM954_21840 PF00529 HlyD membrane-fusion protein of T1SS OM954_21845 PF02321 Outer membrane efflux protein OM954_21850 PF04632 Fusaric acid resistance protein family OM954_21855 PF00083 Sugar (and other) transporter OM954_21865 PF03466 LysR substrate binding domain OM954_21865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_21870 PF00106 short chain dehydrogenase OM954_21880 PF13091 PLD-like domain OM954_21880 PF13396 Phospholipase_D-nuclease N-terminal OM954_21905 PF00872 Transposase, Mutator family OM954_21930 PF00849 RNA pseudouridylate synthase OM954_21970 PF07929 Plasmid pRiA4b ORF-3-like protein OM954_21975 PF06511 Type III secretion systems tip complex components OM954_22020 PF07720 Tetratricopeptide repeat OM954_22025 PF01312 FlhB HrpN YscU SpaS Family OM954_22030 PF01311 Bacterial export proteins, family 1 OM954_22035 PF01313 Bacterial export proteins, family 3 OM954_22040 PF00813 FliP family OM954_22060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OM954_22060 PF02874 ATP synthase alpha/beta family, beta-barrel domain OM954_22060 PF18269 T3SS EscN ATPase C-terminal domain OM954_22070 PF00771 FHIPEP family OM954_22075 PF07201 HrpJ-like domain OM954_22080 PF00263 Bacterial type II and III secretion system protein OM954_22080 PF03958 Bacterial type II/III secretion system short domain OM954_22095 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF OM954_22105 PF01514 Secretory protein of YscJ/FliF family OM954_22160 PF00872 Transposase, Mutator family OM954_22210 PF05598 Transposase domain (DUF772) OM954_22210 PF01609 Transposase DDE domain OM954_22215 PF00872 Transposase, Mutator family OM954_22225 PF06834 TraU protein OM954_22250 PF13276 HTH-like domain OM954_22250 PF13333 Integrase core domain OM954_22250 PF00665 Integrase core domain OM954_22320 PF02785 Biotin carboxylase C-terminal domain OM954_22320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OM954_22320 PF00289 Biotin carboxylase, N-terminal domain OM954_22325 PF01425 Amidase OM954_22385 PF01381 Helix-turn-helix OM954_22400 PF13538 UvrD-like helicase C-terminal domain OM954_22405 PF13361 UvrD-like helicase C-terminal domain OM954_22405 PF00580 UvrD/REP helicase N-terminal domain OM954_22405 PF12705 PD-(D/E)XK nuclease superfamily OM954_22410 PF17946 RecC C-terminal domain OM954_22445 PF00005 ABC transporter OM954_22450 PF02405 Permease MlaE OM954_22455 PF02470 MlaD protein OM954_22460 PF05494 MlaC protein OM954_22470 PF04333 MlaA lipoprotein OM954_22480 PF00255 Glutathione peroxidase OM954_22490 PF02646 RmuC family OM954_22495 PF08240 Alcohol dehydrogenase GroES-like domain OM954_22495 PF00107 Zinc-binding dehydrogenase OM954_22500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OM954_22500 PF03466 LysR substrate binding domain OM954_22520 PF13520 Amino acid permease OM954_22525 PF17678 Glycosyl hydrolase family 92 N-terminal domain OM954_22525 PF07971 Glycosyl hydrolase family 92 OM954_22540 PF10947 Protein of unknown function (DUF2628) OM954_22545 PF00990 Diguanylate cyclase, GGDEF domain OM954_22550 PF05651 Putative sugar diacid recognition OM954_22550 PF17853 GGDEF-like domain OM954_22550 PF13556 PucR C-terminal helix-turn-helix domain OM954_22555 PF02595 Glycerate kinase family OM954_22575 PF10672 S-adenosylmethionine-dependent methyltransferase OM954_22575 PF17785 PUA-like domain OM954_22580 PF03741 Integral membrane protein TerC family OM954_22585 PF01694 Rhomboid family OM954_22590 PF03009 Glycerophosphoryl diester phosphodiesterase family OM954_22600 PF01569 PAP2 superfamily OM954_22605 PF12631 MnmE helical domain OM954_22605 PF10396 GTP-binding protein TrmE N-terminus OM954_22605 PF01926 50S ribosome-binding GTPase OM954_22610 PF01522 Polysaccharide deacetylase OM954_22620 PF14849 YidC periplasmic domain OM954_22620 PF02096 60Kd inner membrane protein OM954_22625 PF00825 Ribonuclease P OM954_22630 PF00468 Ribosomal protein L34 OM954_22685 PF06616 BsuBI/PstI restriction endonuclease domain OM954_22685 PF17728 BsuBI/PstI restriction endonuclease HTH domain OM954_22690 PF07669 Eco57I restriction-modification methylase OM954_22690 PF12950 TaqI-like C-terminal specificity domain OM954_22785 PF02534 Type IV secretory system Conjugative DNA transfer OM954_22825 PF00437 Type II/IV secretion system protein OM954_22840 PF03135 CagE, TrbE, VirB family, component of type IV transporter system OM954_22865 PF04610 TrbL/VirB6 plasmid conjugal transfer protein OM954_22880 PF03743 Bacterial conjugation TrbI-like protein OM954_22900 PF01131 DNA topoisomerase OM954_22900 PF01751 Toprim domain OM954_22915 PF01131 DNA topoisomerase OM954_22915 PF01751 Toprim domain OM954_22915 PF13368 Topoisomerase C-terminal repeat OM954_22915 PF01396 Topoisomerase DNA binding C4 zinc finger OM954_22930 PF01850 PIN domain OM954_22940 PF02796 Helix-turn-helix domain of resolvase OM954_22940 PF00239 Resolvase, N terminal domain OM954_22980 PF00872 Transposase, Mutator family