locus-tag class description AC611_00005 PF11638 DnaA N-terminal domain AC611_00005 PF08299 Bacterial dnaA protein helix-turn-helix AC611_00005 PF00308 Bacterial dnaA protein AC611_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AC611_00010 PF02767 DNA polymerase III beta subunit, central domain AC611_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AC611_00015 PF02463 RecF/RecN/SMC N terminal domain AC611_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_00020 PF00204 DNA gyrase B AC611_00020 PF00986 DNA gyrase B subunit, carboxyl terminus AC611_00020 PF18053 DNA gyrase B subunit insert domain AC611_00020 PF01751 Toprim domain AC611_00030 PF01435 Peptidase family M48 AC611_00040 PF03544 Gram-negative bacterial TonB protein C-terminal AC611_00045 PF01618 MotA/TolQ/ExbB proton channel family AC611_00050 PF02472 Biopolymer transport protein ExbD/TolR AC611_00055 PF02472 Biopolymer transport protein ExbD/TolR AC611_00080 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AC611_00105 PF04055 Radical SAM superfamily AC611_00115 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AC611_00130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC611_00130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC611_00135 PF03572 Peptidase family S41 AC611_00135 PF13180 PDZ domain AC611_00140 PF01551 Peptidase family M23 AC611_00150 PF04389 Peptidase family M28 AC611_00160 PF00150 Cellulase (glycosyl hydrolase family 5) AC611_00165 PF00150 Cellulase (glycosyl hydrolase family 5) AC611_00175 PF00150 Cellulase (glycosyl hydrolase family 5) AC611_00180 PF08240 Alcohol dehydrogenase GroES-like domain AC611_00180 PF00107 Zinc-binding dehydrogenase AC611_00190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_00190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AC611_00195 PF01645 Conserved region in glutamate synthase AC611_00195 PF04898 Glutamate synthase central domain AC611_00195 PF00310 Glutamine amidotransferases class-II AC611_00195 PF01493 GXGXG motif AC611_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_00220 PF03466 LysR substrate binding domain AC611_00280 PF00271 Helicase conserved C-terminal domain AC611_00280 PF09369 Domain of unknown function (DUF1998) AC611_00280 PF00270 DEAD/DEAH box helicase AC611_00285 PF03006 Haemolysin-III related AC611_00295 PF00106 short chain dehydrogenase AC611_00305 PF03466 LysR substrate binding domain AC611_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_00330 PF02525 Flavodoxin-like fold AC611_00335 PF01527 Transposase AC611_00340 PF01609 Transposase DDE domain AC611_00340 PF05598 Transposase domain (DUF772) AC611_00350 PF01609 Transposase DDE domain AC611_00350 PF05598 Transposase domain (DUF772) AC611_00365 PF05532 CsbD-like AC611_00390 PF01447 Thermolysin metallopeptidase, catalytic domain AC611_00390 PF02868 Thermolysin metallopeptidase, alpha-helical domain AC611_00390 PF16485 Protealysin propeptide AC611_00400 PF13344 Haloacid dehalogenase-like hydrolase AC611_00400 PF00293 NUDIX domain AC611_00415 PF00085 Thioredoxin AC611_00420 PF00083 Sugar (and other) transporter AC611_00420 PF08946 Osmosensory transporter coiled coil AC611_00460 PF07726 ATPase family associated with various cellular activities (AAA) AC611_00460 PF17863 AAA lid domain AC611_00500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AC611_00505 PF00155 Aminotransferase class I and II AC611_00510 PF07715 TonB-dependent Receptor Plug Domain AC611_00510 PF00593 TonB dependent receptor AC611_00530 PF02735 Ku70/Ku80 beta-barrel domain AC611_00535 PF01070 FMN-dependent dehydrogenase AC611_00540 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AC611_00545 PF07730 Histidine kinase AC611_00550 PF00072 Response regulator receiver domain AC611_00550 PF00196 Bacterial regulatory proteins, luxR family AC611_00575 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AC611_00575 PF12241 Trans-2-enoyl-CoA reductase catalytic region AC611_00575 PF07055 Enoyl reductase FAD binding domain AC611_00580 PF01609 Transposase DDE domain AC611_00580 PF05598 Transposase domain (DUF772) AC611_00600 PF11896 Domain of unknown function (DUF3416) AC611_00600 PF00128 Alpha amylase, catalytic domain AC611_00605 PF00128 Alpha amylase, catalytic domain AC611_00605 PF16657 Maltogenic Amylase, C-terminal domain AC611_00610 PF02806 Alpha amylase, C-terminal all-beta domain AC611_00610 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC611_00610 PF00128 Alpha amylase, catalytic domain AC611_00620 PF00248 Aldo/keto reductase family AC611_00625 PF00135 Carboxylesterase family AC611_00630 PF07859 alpha/beta hydrolase fold AC611_00630 PF13472 GDSL-like Lipase/Acylhydrolase family AC611_00640 PF03480 Bacterial extracellular solute-binding protein, family 7 AC611_00650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AC611_00655 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC611_00655 PF04616 Glycosyl hydrolases family 43 AC611_00660 PF00356 Bacterial regulatory proteins, lacI family AC611_00665 PF04962 KduI/IolB family AC611_00680 PF00657 GDSL-like Lipase/Acylhydrolase AC611_00690 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AC611_00695 PF01037 Lrp/AsnC ligand binding domain AC611_00700 PF07715 TonB-dependent Receptor Plug Domain AC611_00700 PF00593 TonB dependent receptor AC611_00700 PF07660 Secretin and TonB N terminus short domain AC611_00705 PF01734 Patatin-like phospholipase AC611_00715 PF00005 ABC transporter AC611_00730 PF00571 CBS domain AC611_00730 PF00005 ABC transporter AC611_00735 PF00528 Binding-protein-dependent transport system inner membrane component AC611_00745 PF03781 Sulfatase-modifying factor enzyme 1 AC611_00745 PF12867 DinB superfamily AC611_00775 PF01883 Iron-sulfur cluster assembly protein AC611_00775 PF10609 NUBPL iron-transfer P-loop NTPase AC611_00790 PF13091 PLD-like domain AC611_00795 PF03061 Thioesterase superfamily AC611_00820 PF08240 Alcohol dehydrogenase GroES-like domain AC611_00820 PF00107 Zinc-binding dehydrogenase AC611_00830 PF02673 Bacitracin resistance protein BacA AC611_00835 PF03951 Glutamine synthetase, beta-Grasp domain AC611_00835 PF00120 Glutamine synthetase, catalytic domain AC611_00840 PF00543 Nitrogen regulatory protein P-II AC611_00845 PF00909 Ammonium Transporter Family AC611_00850 PF00512 His Kinase A (phospho-acceptor) domain AC611_00850 PF00989 PAS fold AC611_00850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_00855 PF00158 Sigma-54 interaction domain AC611_00855 PF02954 Bacterial regulatory protein, Fis family AC611_00855 PF00072 Response regulator receiver domain AC611_00860 PF00080 Copper/zinc superoxide dismutase (SODC) AC611_00865 PF00080 Copper/zinc superoxide dismutase (SODC) AC611_00880 PF02803 Thiolase, C-terminal domain AC611_00880 PF00108 Thiolase, N-terminal domain AC611_00915 PF00581 Rhodanese-like domain AC611_00920 PF02556 Preprotein translocase subunit SecB AC611_00925 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AC611_00925 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AC611_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_00960 PF00072 Response regulator receiver domain AC611_00960 PF00158 Sigma-54 interaction domain AC611_00960 PF02954 Bacterial regulatory protein, Fis family AC611_00975 PF07690 Major Facilitator Superfamily AC611_00980 PF00588 SpoU rRNA Methylase family AC611_00995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC611_00995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC611_01000 PF13784 Fic/DOC family N-terminal AC611_01000 PF02661 Fic/DOC family AC611_01005 PF00561 alpha/beta hydrolase fold AC611_01010 PF03692 Putative zinc- or iron-chelating domain AC611_01015 PF00501 AMP-binding enzyme AC611_01020 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AC611_01040 PF01820 D-ala D-ala ligase N-terminus AC611_01040 PF07478 D-ala D-ala ligase C-terminus AC611_01055 PF03109 ABC1 family AC611_01065 PF00849 RNA pseudouridylate synthase AC611_01075 PF00472 RF-1 domain AC611_01085 PF01112 Asparaginase AC611_01090 PF01432 Peptidase family M3 AC611_01095 PF12706 Beta-lactamase superfamily domain AC611_01115 PF12833 Helix-turn-helix domain AC611_01120 PF00999 Sodium/hydrogen exchanger family AC611_01130 PF01274 Malate synthase AC611_01135 PF00463 Isocitrate lyase family AC611_01140 PF00990 Diguanylate cyclase, GGDEF domain AC611_01155 PF01609 Transposase DDE domain AC611_01155 PF05598 Transposase domain (DUF772) AC611_01165 PF00326 Prolyl oligopeptidase family AC611_01170 PF00364 Biotin-requiring enzyme AC611_01170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC611_01170 PF00289 Biotin carboxylase, N-terminal domain AC611_01170 PF02785 Biotin carboxylase C-terminal domain AC611_01175 PF01039 Carboxyl transferase domain AC611_01180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_01180 PF02770 Acyl-CoA dehydrogenase, middle domain AC611_01180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_01235 PF02492 CobW/HypB/UreG, nucleotide-binding domain AC611_01235 PF07683 Cobalamin synthesis protein cobW C-terminal domain AC611_01260 PF03969 AFG1-like ATPase AC611_01265 PF01047 MarR family AC611_01270 PF02566 OsmC-like protein AC611_01290 PF00107 Zinc-binding dehydrogenase AC611_01290 PF16884 N-terminal domain of oxidoreductase AC611_01305 PF00849 RNA pseudouridylate synthase AC611_01315 PF00271 Helicase conserved C-terminal domain AC611_01315 PF04408 Helicase associated domain (HA2) AC611_01315 PF00270 DEAD/DEAH box helicase AC611_01315 PF08482 ATP-dependent helicase C-terminal AC611_01320 PF07308 Protein of unknown function (DUF1456) AC611_01325 PF00576 HIUase/Transthyretin family AC611_01330 PF13454 FAD-NAD(P)-binding AC611_01335 PF09349 OHCU decarboxylase AC611_01335 PF01014 Uricase AC611_01350 PF00266 Aminotransferase class-V AC611_01355 PF01546 Peptidase family M20/M25/M40 AC611_01355 PF07687 Peptidase dimerisation domain AC611_01360 PF03466 LysR substrate binding domain AC611_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_01365 PF00561 alpha/beta hydrolase fold AC611_01380 PF01425 Amidase AC611_01385 PF01156 Inosine-uridine preferring nucleoside hydrolase AC611_01395 PF00860 Permease family AC611_01405 PF00111 2Fe-2S iron-sulfur cluster binding domain AC611_01410 PF00355 Rieske [2Fe-2S] domain AC611_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_01415 PF03466 LysR substrate binding domain AC611_01420 PF01026 TatD related DNase AC611_01435 PF03466 LysR substrate binding domain AC611_01435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_01440 PF07690 Major Facilitator Superfamily AC611_01450 PF00561 alpha/beta hydrolase fold AC611_01455 PF02146 Sir2 family AC611_01460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC611_01465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC611_01465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC611_01475 PF00551 Formyl transferase AC611_01480 PF00486 Transcriptional regulatory protein, C terminal AC611_01480 PF00072 Response regulator receiver domain AC611_01485 PF00512 His Kinase A (phospho-acceptor) domain AC611_01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_01485 PF00672 HAMP domain AC611_01490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_01490 PF00529 HlyD membrane-fusion protein of T1SS AC611_01495 PF00873 AcrB/AcrD/AcrF family AC611_01500 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AC611_01500 PF02321 Outer membrane efflux protein AC611_01515 PF02677 Epoxyqueuosine reductase QueH AC611_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_01520 PF03466 LysR substrate binding domain AC611_01525 PF03358 NADPH-dependent FMN reductase AC611_01535 PF08267 Cobalamin-independent synthase, N-terminal domain AC611_01535 PF01717 Cobalamin-independent synthase, Catalytic domain AC611_01540 PF03812 2-keto-3-deoxygluconate permease AC611_01560 PF05368 NmrA-like family AC611_01565 PF01638 HxlR-like helix-turn-helix AC611_01585 PF00872 Transposase, Mutator family AC611_01620 PF01527 Transposase AC611_01625 PF13683 Integrase core domain AC611_01625 PF13276 HTH-like domain AC611_01635 PF00920 Dehydratase family AC611_01655 PF00132 Bacterial transferase hexapeptide (six repeats) AC611_01665 PF07690 Major Facilitator Superfamily AC611_01670 PF01966 HD domain AC611_01670 PF11871 Domain of unknown function (DUF3391) AC611_01690 PF00171 Aldehyde dehydrogenase family AC611_01700 PF01494 FAD binding domain AC611_01710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC611_01710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC611_01715 PF00230 Major intrinsic protein AC611_01720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AC611_01720 PF01266 FAD dependent oxidoreductase AC611_01725 PF08220 DeoR-like helix-turn-helix domain AC611_01725 PF00455 DeoR C terminal sensor domain AC611_01735 PF00355 Rieske [2Fe-2S] domain AC611_01740 PF01144 Coenzyme A transferase AC611_01750 PF00108 Thiolase, N-terminal domain AC611_01750 PF02803 Thiolase, C-terminal domain AC611_01755 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AC611_01755 PF00775 Dioxygenase AC611_01765 PF10397 Adenylosuccinate lyase C-terminus AC611_01765 PF00206 Lyase AC611_01770 PF12146 Serine aminopeptidase, S33 AC611_01775 PF02627 Carboxymuconolactone decarboxylase family AC611_01785 PF09339 IclR helix-turn-helix domain AC611_01785 PF01614 Bacterial transcriptional regulator AC611_01795 PF07859 alpha/beta hydrolase fold AC611_01805 PF13932 GidA associated domain AC611_01805 PF01134 Glucose inhibited division protein A AC611_01815 PF00291 Pyridoxal-phosphate dependent enzyme AC611_01835 PF13649 Methyltransferase domain AC611_01845 PF12697 Alpha/beta hydrolase family AC611_01855 PF00155 Aminotransferase class I and II AC611_01860 PF06968 Biotin and Thiamin Synthesis associated domain AC611_01860 PF04055 Radical SAM superfamily AC611_01870 PF01040 UbiA prenyltransferase family AC611_01885 PF05819 NolX protein AC611_01890 PF01609 Transposase DDE domain AC611_01890 PF05598 Transposase domain (DUF772) AC611_01930 PF01313 Bacterial export proteins, family 3 AC611_01935 PF00813 FliP family AC611_01950 PF00771 FHIPEP family AC611_01955 PF01312 FlhB HrpN YscU SpaS Family AC611_01970 PF01514 Secretory protein of YscJ/FliF family AC611_01985 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC611_01985 PF18269 T3SS EscN ATPase C-terminal domain AC611_01985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_01995 PF01311 Bacterial export proteins, family 1 AC611_02010 PF01464 Transglycosylase SLT domain AC611_02025 PF12794 Mechanosensitive ion channel inner membrane domain 1 AC611_02025 PF00924 Mechanosensitive ion channel AC611_02025 PF12795 Mechanosensitive ion channel porin domain AC611_02030 PF00884 Sulfatase AC611_02035 PF03109 ABC1 family AC611_02040 PF05661 Protein of unknown function (DUF808) AC611_02045 PF00072 Response regulator receiver domain AC611_02045 PF00990 Diguanylate cyclase, GGDEF domain AC611_02050 PF00534 Glycosyl transferases group 1 AC611_02050 PF08323 Starch synthase catalytic domain AC611_02055 PF02806 Alpha amylase, C-terminal all-beta domain AC611_02055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC611_02055 PF00128 Alpha amylase, catalytic domain AC611_02060 PF11941 Domain of unknown function (DUF3459) AC611_02060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC611_02060 PF00128 Alpha amylase, catalytic domain AC611_02065 PF02446 4-alpha-glucanotransferase AC611_02070 PF00128 Alpha amylase, catalytic domain AC611_02080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC611_02080 PF00128 Alpha amylase, catalytic domain AC611_02085 PF13460 NAD(P)H-binding AC611_02110 PF00872 Transposase, Mutator family AC611_02115 PF01527 Transposase AC611_02120 PF05598 Transposase domain (DUF772) AC611_02120 PF01609 Transposase DDE domain AC611_02140 PF06903 VirK protein AC611_02145 PF02321 Outer membrane efflux protein AC611_02160 PF00873 AcrB/AcrD/AcrF family AC611_02175 PF00270 DEAD/DEAH box helicase AC611_02175 PF00271 Helicase conserved C-terminal domain AC611_02180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC611_02180 PF00364 Biotin-requiring enzyme AC611_02190 PF02780 Transketolase, C-terminal domain AC611_02190 PF02779 Transketolase, pyrimidine binding domain AC611_02195 PF00676 Dehydrogenase E1 component AC611_02205 PF03301 Tryptophan 2,3-dioxygenase AC611_02210 PF00854 POT family AC611_02225 PF01047 MarR family AC611_02230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC611_02235 PF04209 homogentisate 1,2-dioxygenase AC611_02250 PF03334 Na+/H+ antiporter subunit AC611_02255 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AC611_02265 PF00361 Proton-conducting membrane transporter AC611_02270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC611_02275 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AC611_02275 PF13244 Domain of unknown function (DUF4040) AC611_02275 PF00361 Proton-conducting membrane transporter AC611_02275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC611_02290 PF01447 Thermolysin metallopeptidase, catalytic domain AC611_02290 PF01483 Proprotein convertase P-domain AC611_02290 PF07504 Fungalysin/Thermolysin Propeptide Motif AC611_02290 PF02868 Thermolysin metallopeptidase, alpha-helical domain AC611_02295 PF00182 Chitinase class I AC611_02315 PF01259 SAICAR synthetase AC611_02320 PF00226 DnaJ domain AC611_02320 PF05099 Tellurite resistance protein TerB AC611_02330 PF00834 Ribulose-phosphate 3 epimerase family AC611_02340 PF00781 Diacylglycerol kinase catalytic domain AC611_02345 PF00425 chorismate binding enzyme AC611_02345 PF04715 Anthranilate synthase component I, N terminal region AC611_02355 PF00117 Glutamine amidotransferase class-I AC611_02365 PF00591 Glycosyl transferase family, a/b domain AC611_02365 PF02885 Glycosyl transferase family, helical bundle domain AC611_02370 PF00218 Indole-3-glycerol phosphate synthase AC611_02380 PF00325 Bacterial regulatory proteins, crp family AC611_02380 PF00027 Cyclic nucleotide-binding domain AC611_02385 PF02675 S-adenosylmethionine decarboxylase AC611_02390 PF00893 Small Multidrug Resistance protein AC611_02395 PF03232 Ubiquinone biosynthesis protein COQ7 AC611_02400 PF00572 Ribosomal protein L13 AC611_02405 PF00380 Ribosomal protein S9/S16 AC611_02420 PF00293 NUDIX domain AC611_02430 PF00210 Ferritin-like domain AC611_02435 PF00672 HAMP domain AC611_02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_02435 PF00512 His Kinase A (phospho-acceptor) domain AC611_02435 PF01627 Hpt domain AC611_02435 PF00072 Response regulator receiver domain AC611_02435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC611_02440 PF00072 Response regulator receiver domain AC611_02440 PF00486 Transcriptional regulatory protein, C terminal AC611_02460 PF01521 Iron-sulphur cluster biosynthesis AC611_02470 PF09297 NADH pyrophosphatase zinc ribbon domain AC611_02470 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AC611_02470 PF00293 NUDIX domain AC611_02475 PF17113 Regulatory signalling modulator protein AmpE AC611_02475 PF03186 CobD/Cbib protein AC611_02490 PF07690 Major Facilitator Superfamily AC611_02500 PF07690 Major Facilitator Superfamily AC611_02505 PF12805 FUSC-like inner membrane protein yccS AC611_02515 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AC611_02515 PF02843 Phosphoribosylglycinamide synthetase, C domain AC611_02515 PF02844 Phosphoribosylglycinamide synthetase, N domain AC611_02525 PF02142 MGS-like domain AC611_02525 PF01808 AICARFT/IMPCHase bienzyme AC611_02530 PF01066 CDP-alcohol phosphatidyltransferase AC611_02535 PF12146 Serine aminopeptidase, S33 AC611_02535 PF12147 Putative methyltransferase AC611_02540 PF00782 Dual specificity phosphatase, catalytic domain AC611_02570 PF02954 Bacterial regulatory protein, Fis family AC611_02585 PF01381 Helix-turn-helix AC611_02610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC611_02610 PF02785 Biotin carboxylase C-terminal domain AC611_02610 PF00289 Biotin carboxylase, N-terminal domain AC611_02620 PF00364 Biotin-requiring enzyme AC611_02625 PF01220 Dehydroquinase class II AC611_02635 PF11412 Disulphide bond corrector protein DsbC AC611_02635 PF02683 Cytochrome C biogenesis protein transmembrane region AC611_02640 PF03091 CutA1 divalent ion tolerance protein AC611_02650 PF00166 Chaperonin 10 Kd subunit AC611_02655 PF00118 TCP-1/cpn60 chaperonin family AC611_02665 PF07715 TonB-dependent Receptor Plug Domain AC611_02665 PF00593 TonB dependent receptor AC611_02670 PF07804 HipA-like C-terminal domain AC611_02675 PF00793 DAHP synthetase I family AC611_02695 PF08450 SMP-30/Gluconolactonase/LRE-like region AC611_02705 PF03710 Glutamate-ammonia ligase adenylyltransferase AC611_02705 PF08335 GlnD PII-uridylyltransferase AC611_02710 PF02592 Putative vitamin uptake transporter AC611_02725 PF05598 Transposase domain (DUF772) AC611_02725 PF01609 Transposase DDE domain AC611_02740 PF00881 Nitroreductase family AC611_02745 PF04264 YceI-like domain AC611_02775 PF16957 Malonate decarboxylase, alpha subunit, transporter AC611_02780 PF06857 Malonate decarboxylase delta subunit (MdcD) AC611_02785 PF01039 Carboxyl transferase domain AC611_02795 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AC611_02800 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AC611_02805 PF00698 Acyl transferase domain AC611_02815 PF00392 Bacterial regulatory proteins, gntR family AC611_02815 PF07729 FCD domain AC611_02855 PF07745 Glycosyl hydrolase family 53 AC611_02860 PF17831 Pyruvate dehydrogenase E1 component middle domain AC611_02860 PF00456 Transketolase, thiamine diphosphate binding domain AC611_02865 PF00872 Transposase, Mutator family AC611_02875 PF00106 short chain dehydrogenase AC611_02900 PF00106 short chain dehydrogenase AC611_02910 PF13409 Glutathione S-transferase, N-terminal domain AC611_02955 PF07759 Protein of unknown function (DUF1615) AC611_02960 PF00990 Diguanylate cyclase, GGDEF domain AC611_02960 PF05230 MASE2 domain AC611_02965 PF02082 Transcriptional regulator AC611_02970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_02990 PF00892 EamA-like transporter family AC611_02995 PF03330 Lytic transglycolase AC611_03005 PF00553 Cellulose binding domain AC611_03005 PF01341 Glycosyl hydrolases family 6 AC611_03005 PF00041 Fibronectin type III domain AC611_03020 PF00324 Amino acid permease AC611_03030 PF01544 CorA-like Mg2+ transporter protein AC611_03040 PF01204 Trehalase AC611_03050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC611_03050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC611_03080 PF00072 Response regulator receiver domain AC611_03080 PF09456 RcsC Alpha-Beta-Loop (ABL) AC611_03080 PF00512 His Kinase A (phospho-acceptor) domain AC611_03080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_03090 PF03797 Autotransporter beta-domain AC611_03095 PF00150 Cellulase (glycosyl hydrolase family 5) AC611_03095 PF00553 Cellulose binding domain AC611_03125 PF13632 Glycosyl transferase family group 2 AC611_03135 PF07694 5TMR of 5TMR-LYT AC611_03135 PF06580 Histidine kinase AC611_03140 PF04397 LytTr DNA-binding domain AC611_03140 PF00072 Response regulator receiver domain AC611_03145 PF03900 Porphobilinogen deaminase, C-terminal domain AC611_03145 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AC611_03180 PF00326 Prolyl oligopeptidase family AC611_03180 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC611_03190 PF00155 Aminotransferase class I and II AC611_03195 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AC611_03195 PF00326 Prolyl oligopeptidase family AC611_03200 PF04304 Protein of unknown function (DUF454) AC611_03210 PF01678 Diaminopimelate epimerase AC611_03220 PF02899 Phage integrase, N-terminal SAM-like domain AC611_03220 PF00589 Phage integrase family AC611_03225 PF00227 Proteasome subunit AC611_03230 PF10431 C-terminal, D2-small domain, of ClpB protein AC611_03230 PF07724 AAA domain (Cdc48 subfamily) AC611_03230 PF00004 ATPase family associated with various cellular activities (AAA) AC611_03240 PF13673 Acetyltransferase (GNAT) domain AC611_03245 PF13533 Biotin-lipoyl like AC611_03255 PF01209 ubiE/COQ5 methyltransferase family AC611_03260 PF00563 EAL domain AC611_03260 PF03707 Bacterial signalling protein N terminal repeat AC611_03260 PF00990 Diguanylate cyclase, GGDEF domain AC611_03265 PF11838 ERAP1-like C-terminal domain AC611_03265 PF01433 Peptidase family M1 domain AC611_03285 PF13360 PQQ-like domain AC611_03290 PF00497 Bacterial extracellular solute-binding proteins, family 3 AC611_03305 PF08240 Alcohol dehydrogenase GroES-like domain AC611_03305 PF00107 Zinc-binding dehydrogenase AC611_03315 PF02954 Bacterial regulatory protein, Fis family AC611_03315 PF00158 Sigma-54 interaction domain AC611_03315 PF01590 GAF domain AC611_03330 PF00294 pfkB family carbohydrate kinase AC611_03340 PF04085 rod shape-determining protein MreC AC611_03350 PF00905 Penicillin binding protein transpeptidase domain AC611_03350 PF03717 Penicillin-binding Protein dimerisation domain AC611_03355 PF01098 Cell cycle protein AC611_03360 PF02534 Type IV secretory system Conjugative DNA transfer AC611_03365 PF05598 Transposase domain (DUF772) AC611_03365 PF01609 Transposase DDE domain AC611_03385 PF00295 Glycosyl hydrolases family 28 AC611_03390 PF13406 Transglycosylase SLT domain AC611_03395 PF03330 Lytic transglycolase AC611_03395 PF05036 Sporulation related domain AC611_03400 PF07943 Penicillin-binding protein 5, C-terminal domain AC611_03400 PF00768 D-alanyl-D-alanine carboxypeptidase AC611_03410 PF04359 Protein of unknown function (DUF493) AC611_03415 PF03099 Biotin/lipoate A/B protein ligase family AC611_03420 PF04055 Radical SAM superfamily AC611_03420 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AC611_03425 PF11818 C-terminal domain of tail specific protease (DUF3340) AC611_03425 PF17804 Tail specific protease N-terminal domain AC611_03425 PF00595 PDZ domain AC611_03425 PF03572 Peptidase family S41 AC611_03435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_03435 PF03466 LysR substrate binding domain AC611_03445 PF00293 NUDIX domain AC611_03445 PF01467 Cytidylyltransferase-like AC611_03480 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AC611_03480 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC611_03485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC611_03485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AC611_03490 PF04972 BON domain AC611_03495 PF00512 His Kinase A (phospho-acceptor) domain AC611_03495 PF01590 GAF domain AC611_03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_03495 PF08446 PAS fold AC611_03495 PF00360 Phytochrome region AC611_03500 PF00072 Response regulator receiver domain AC611_03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_03505 PF00512 His Kinase A (phospho-acceptor) domain AC611_03510 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC611_03555 PF00263 Bacterial type II and III secretion system protein AC611_03555 PF03958 Bacterial type II/III secretion system short domain AC611_03560 PF00437 Type II/IV secretion system protein AC611_03565 PF00482 Type II secretion system (T2SS), protein F AC611_03570 PF08334 Type II secretion system (T2SS), protein G AC611_03570 PF07963 Prokaryotic N-terminal methylation motif AC611_03575 PF07963 Prokaryotic N-terminal methylation motif AC611_03575 PF12019 Type II transport protein GspH AC611_03580 PF07963 Prokaryotic N-terminal methylation motif AC611_03580 PF02501 Type II secretion system (T2SS), protein I AC611_03585 PF07963 Prokaryotic N-terminal methylation motif AC611_03585 PF11612 Type II secretion system (T2SS), protein J AC611_03590 PF03934 Type II secretion system (T2SS), protein K AC611_03615 PF07690 Major Facilitator Superfamily AC611_03620 PF00356 Bacterial regulatory proteins, lacI family AC611_03625 PF01380 SIS domain AC611_03630 PF01979 Amidohydrolase family AC611_03640 PF01966 HD domain AC611_03640 PF12627 Probable RNA and SrmB- binding site of polymerase A AC611_03640 PF01743 Poly A polymerase head domain AC611_03645 PF01464 Transglycosylase SLT domain AC611_03645 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AC611_03650 PF07715 TonB-dependent Receptor Plug Domain AC611_03650 PF00593 TonB dependent receptor AC611_03655 PF10458 Valyl tRNA synthetase tRNA binding arm AC611_03655 PF08264 Anticodon-binding domain of tRNA AC611_03655 PF00133 tRNA synthetases class I (I, L, M and V) AC611_03670 PF00883 Cytosol aminopeptidase family, catalytic domain AC611_03670 PF02789 Cytosol aminopeptidase family, N-terminal domain AC611_03680 PF03739 Lipopolysaccharide export system permease LptF/LptG AC611_03695 PF00589 Phage integrase family AC611_03695 PF02899 Phage integrase, N-terminal SAM-like domain AC611_03700 PF10411 Disulfide bond isomerase protein N-terminus AC611_03700 PF13098 Thioredoxin-like domain AC611_03705 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AC611_03705 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AC611_03705 PF02769 AIR synthase related protein, C-terminal domain AC611_03715 PF13018 Extended Signal Peptide of Type V secretion system AC611_03715 PF03895 YadA-like membrane anchor domain AC611_03715 PF05658 Head domain of trimeric autotransporter adhesin AC611_03715 PF05662 Coiled stalk of trimeric autotransporter adhesin AC611_03720 PF00082 Subtilase family AC611_03720 PF04151 Bacterial pre-peptidase C-terminal domain AC611_03725 PF13018 Extended Signal Peptide of Type V secretion system AC611_03725 PF03895 YadA-like membrane anchor domain AC611_03725 PF05658 Head domain of trimeric autotransporter adhesin AC611_03725 PF05662 Coiled stalk of trimeric autotransporter adhesin AC611_03730 PF00082 Subtilase family AC611_03730 PF04151 Bacterial pre-peptidase C-terminal domain AC611_03735 PF00437 Type II/IV secretion system protein AC611_03735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC611_03740 PF00482 Type II secretion system (T2SS), protein F AC611_03745 PF08334 Type II secretion system (T2SS), protein G AC611_03750 PF12019 Type II transport protein GspH AC611_03755 PF07963 Prokaryotic N-terminal methylation motif AC611_03765 PF03934 Type II secretion system (T2SS), protein K AC611_03770 PF05137 Fimbrial assembly protein (PilN) AC611_03775 PF10741 Type II secretion system (T2SS), protein M subtype b AC611_03785 PF03958 Bacterial type II/III secretion system short domain AC611_03785 PF00263 Bacterial type II and III secretion system protein AC611_03795 PF00392 Bacterial regulatory proteins, gntR family AC611_03795 PF07702 UTRA domain AC611_03805 PF07715 TonB-dependent Receptor Plug Domain AC611_03805 PF00593 TonB dependent receptor AC611_03855 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AC611_03855 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AC611_03870 PF03552 Cellulose synthase AC611_03870 PF00535 Glycosyl transferase family 2 AC611_03870 PF07238 PilZ domain AC611_03875 PF03170 Bacterial cellulose synthase subunit AC611_03880 PF01270 Glycosyl hydrolases family 8 AC611_03900 PF03960 ArsC family AC611_03910 PF01327 Polypeptide deformylase AC611_03915 PF00005 ABC transporter AC611_03915 PF12848 ABC transporter AC611_03925 PF00464 Serine hydroxymethyltransferase AC611_03930 PF03477 ATP cone domain AC611_03940 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AC611_03940 PF01872 RibD C-terminal domain AC611_03950 PF00872 Transposase, Mutator family AC611_03960 PF00677 Lumazine binding domain AC611_03965 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AC611_03965 PF00925 GTP cyclohydrolase II AC611_03970 PF00885 6,7-dimethyl-8-ribityllumazine synthase AC611_03975 PF01029 NusB family AC611_03980 PF02769 AIR synthase related protein, C-terminal domain AC611_03980 PF00586 AIR synthase related protein, N-terminal domain AC611_03995 PF03814 Potassium-transporting ATPase A subunit AC611_04005 PF02669 K+-transporting ATPase, c chain AC611_04010 PF02702 Osmosensitive K+ channel His kinase sensor domain AC611_04010 PF00512 His Kinase A (phospho-acceptor) domain AC611_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_04010 PF13492 GAF domain AC611_04010 PF13493 Domain of unknown function (DUF4118) AC611_04015 PF00072 Response regulator receiver domain AC611_04015 PF00486 Transcriptional regulatory protein, C terminal AC611_04025 PF02913 FAD linked oxidases, C-terminal domain AC611_04025 PF01565 FAD binding domain AC611_04030 PF04307 LexA-binding, inner membrane-associated putative hydrolase AC611_04035 PF02021 Uncharacterised protein family UPF0102 AC611_04040 PF04348 LppC putative lipoprotein AC611_04045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC611_04060 PF02381 MraZ protein, putative antitoxin-like AC611_04065 PF01795 MraW methylase family AC611_04070 PF04999 Cell division protein FtsL AC611_04075 PF00905 Penicillin binding protein transpeptidase domain AC611_04075 PF03717 Penicillin-binding Protein dimerisation domain AC611_04080 PF08245 Mur ligase middle domain AC611_04080 PF02875 Mur ligase family, glutamate ligase domain AC611_04080 PF01225 Mur ligase family, catalytic domain AC611_04085 PF08245 Mur ligase middle domain AC611_04085 PF02875 Mur ligase family, glutamate ligase domain AC611_04085 PF01225 Mur ligase family, catalytic domain AC611_04090 PF00953 Glycosyl transferase family 4 AC611_04095 PF01098 Cell cycle protein AC611_04100 PF03033 Glycosyltransferase family 28 N-terminal domain AC611_04100 PF04101 Glycosyltransferase family 28 C-terminal domain AC611_04105 PF01225 Mur ligase family, catalytic domain AC611_04105 PF02875 Mur ligase family, glutamate ligase domain AC611_04105 PF08245 Mur ligase middle domain AC611_04110 PF07478 D-ala D-ala ligase C-terminus AC611_04110 PF01820 D-ala D-ala ligase N-terminus AC611_04115 PF03799 Cell division protein FtsQ AC611_04115 PF08478 POTRA domain, FtsQ-type AC611_04120 PF02491 SHS2 domain inserted in FTSA AC611_04125 PF00091 Tubulin/FtsZ family, GTPase domain AC611_04125 PF12327 FtsZ family, C-terminal domain AC611_04130 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AC611_04140 PF01551 Peptidase family M23 AC611_04140 PF01476 LysM domain AC611_04140 PF08525 Opacity-associated protein A N-terminal motif AC611_04145 PF07516 SecA Wing and Scaffold domain AC611_04145 PF01043 SecA preprotein cross-linking domain AC611_04145 PF07517 SecA DEAD-like domain AC611_04145 PF02810 SEC-C motif AC611_04150 PF00293 NUDIX domain AC611_04160 PF02219 Methylenetetrahydrofolate reductase AC611_04170 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_04170 PF00107 Zinc-binding dehydrogenase AC611_04170 PF16197 Ketoacyl-synthetase C-terminal extension AC611_04170 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_04170 PF08240 Alcohol dehydrogenase GroES-like domain AC611_04170 PF14765 Polyketide synthase dehydratase AC611_04170 PF08659 KR domain AC611_04170 PF00550 Phosphopantetheine attachment site AC611_04170 PF00698 Acyl transferase domain AC611_04175 PF00082 Subtilase family AC611_04175 PF09286 Pro-kumamolisin, activation domain AC611_04185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC611_04190 PF00128 Alpha amylase, catalytic domain AC611_04215 PF00685 Sulfotransferase domain AC611_04225 PF13649 Methyltransferase domain AC611_04230 PF05221 S-adenosyl-L-homocysteine hydrolase AC611_04230 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AC611_04240 PF00311 Phosphoenolpyruvate carboxylase AC611_04260 PF01389 OmpA-like transmembrane domain AC611_04260 PF00691 OmpA family AC611_04275 PF00328 Histidine phosphatase superfamily (branch 2) AC611_04280 PF02773 S-adenosylmethionine synthetase, C-terminal domain AC611_04280 PF02772 S-adenosylmethionine synthetase, central domain AC611_04280 PF00438 S-adenosylmethionine synthetase, N-terminal domain AC611_04290 PF13649 Methyltransferase domain AC611_04295 PF01207 Dihydrouridine synthase (Dus) AC611_04305 PF00294 pfkB family carbohydrate kinase AC611_04310 PF07662 Na+ dependent nucleoside transporter C-terminus AC611_04310 PF07670 Nucleoside recognition AC611_04310 PF01773 Na+ dependent nucleoside transporter N-terminus AC611_04315 PF00248 Aldo/keto reductase family AC611_04325 PF00593 TonB dependent receptor AC611_04325 PF07715 TonB-dependent Receptor Plug Domain AC611_04345 PF00528 Binding-protein-dependent transport system inner membrane component AC611_04350 PF00005 ABC transporter AC611_04360 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AC611_04370 PF00005 ABC transporter AC611_04375 PF13472 GDSL-like Lipase/Acylhydrolase family AC611_04380 PF00072 Response regulator receiver domain AC611_04380 PF00486 Transcriptional regulatory protein, C terminal AC611_04385 PF00512 His Kinase A (phospho-acceptor) domain AC611_04385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_04385 PF08521 Two-component sensor kinase N-terminal AC611_04395 PF01219 Prokaryotic diacylglycerol kinase AC611_04405 PF04536 TPM domain AC611_04415 PF01790 Prolipoprotein diacylglyceryl transferase AC611_04420 PF00303 Thymidylate synthase AC611_04430 PF00186 Dihydrofolate reductase AC611_04435 PF00149 Calcineurin-like phosphoesterase AC611_04440 PF04379 ApaG domain AC611_04445 PF00398 Ribosomal RNA adenine dimethylase AC611_04450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AC611_04455 PF09312 SurA N-terminal domain AC611_04455 PF00639 PPIC-type PPIASE domain AC611_04460 PF04453 LPS transport system D AC611_04460 PF03968 OstA-like protein AC611_04470 PF00850 Histone deacetylase domain AC611_04475 PF01923 Cobalamin adenosyltransferase AC611_04485 PF01494 FAD binding domain AC611_04490 PF01494 FAD binding domain AC611_04510 PF00392 Bacterial regulatory proteins, gntR family AC611_04510 PF07729 FCD domain AC611_04515 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC611_04520 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AC611_04520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC611_04525 PF03466 LysR substrate binding domain AC611_04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_04530 PF13193 AMP-binding enzyme C-terminal domain AC611_04530 PF00501 AMP-binding enzyme AC611_04540 PF00378 Enoyl-CoA hydratase/isomerase AC611_04560 PF08450 SMP-30/Gluconolactonase/LRE-like region AC611_04565 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AC611_04565 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AC611_04570 PF01728 FtsJ-like methyltransferase AC611_04570 PF18125 RlmM ferredoxin-like domain AC611_04595 PF00892 EamA-like transporter family AC611_04605 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AC611_04605 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC611_04620 PF00990 Diguanylate cyclase, GGDEF domain AC611_04620 PF00072 Response regulator receiver domain AC611_04625 PF00672 HAMP domain AC611_04625 PF00512 His Kinase A (phospho-acceptor) domain AC611_04625 PF01627 Hpt domain AC611_04625 PF00072 Response regulator receiver domain AC611_04625 PF17149 Periplasmic sensor domain found in signal transduction proteins AC611_04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_04630 PF00196 Bacterial regulatory proteins, luxR family AC611_04630 PF00072 Response regulator receiver domain AC611_04640 PF01625 Peptide methionine sulfoxide reductase AC611_04650 PF00923 Transaldolase/Fructose-6-phosphate aldolase AC611_04655 PF14760 Rnk N-terminus AC611_04655 PF01272 Transcription elongation factor, GreA/GreB, C-term AC611_04660 PF03466 LysR substrate binding domain AC611_04660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_04665 PF13192 Thioredoxin domain AC611_04665 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_04670 PF00578 AhpC/TSA family AC611_04670 PF10417 C-terminal domain of 1-Cys peroxiredoxin AC611_04675 PF05175 Methyltransferase small domain AC611_04675 PF17827 PrmC N-terminal domain AC611_04680 PF00561 alpha/beta hydrolase fold AC611_04690 PF00293 NUDIX domain AC611_04695 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC611_04695 PF01612 3'-5' exonuclease AC611_04695 PF00476 DNA polymerase family A AC611_04695 PF01367 5'-3' exonuclease, C-terminal SAM fold AC611_04750 PF01063 Amino-transferase class IV AC611_04755 PF04151 Bacterial pre-peptidase C-terminal domain AC611_04755 PF00082 Subtilase family AC611_04760 PF00082 Subtilase family AC611_04760 PF04151 Bacterial pre-peptidase C-terminal domain AC611_04765 PF04151 Bacterial pre-peptidase C-terminal domain AC611_04765 PF00082 Subtilase family AC611_04770 PF04073 Aminoacyl-tRNA editing domain AC611_04780 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain AC611_04780 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AC611_04790 PF03358 NADPH-dependent FMN reductase AC611_04795 PF03631 Virulence factor BrkB AC611_04800 PF08534 Redoxin AC611_04805 PF00708 Acylphosphatase AC611_04815 PF03976 Polyphosphate kinase 2 (PPK2) AC611_04820 PF00994 Probable molybdopterin binding domain AC611_04830 PF00472 RF-1 domain AC611_04830 PF03462 PCRF domain AC611_04835 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AC611_04835 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AC611_04835 PF01488 Shikimate / quinate 5-dehydrogenase AC611_04845 PF03550 Outer membrane lipoprotein LolB AC611_04850 PF08544 GHMP kinases C terminal AC611_04850 PF00288 GHMP kinases N terminal domain AC611_04860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AC611_04860 PF14572 Phosphoribosyl synthetase-associated domain AC611_04865 PF01386 Ribosomal L25p family AC611_04865 PF14693 Ribosomal protein TL5, C-terminal domain AC611_04870 PF01195 Peptidyl-tRNA hydrolase AC611_04875 PF06071 Protein of unknown function (DUF933) AC611_04875 PF01926 50S ribosome-binding GTPase AC611_04895 PF00009 Elongation factor Tu GTP binding domain AC611_04895 PF03144 Elongation factor Tu domain 2 AC611_04895 PF03143 Elongation factor Tu C-terminal domain AC611_04905 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AC611_04910 PF02357 Transcription termination factor nusG AC611_04910 PF00467 KOW motif AC611_04915 PF03946 Ribosomal protein L11, N-terminal domain AC611_04915 PF00298 Ribosomal protein L11, RNA binding domain AC611_04920 PF00687 Ribosomal protein L1p/L10e family AC611_04925 PF00466 Ribosomal protein L10 AC611_04930 PF16320 Ribosomal protein L7/L12 dimerisation domain AC611_04930 PF00542 Ribosomal protein L7/L12 C-terminal domain AC611_04935 PF04561 RNA polymerase Rpb2, domain 2 AC611_04935 PF04560 RNA polymerase Rpb2, domain 7 AC611_04935 PF04565 RNA polymerase Rpb2, domain 3 AC611_04935 PF00562 RNA polymerase Rpb2, domain 6 AC611_04935 PF04563 RNA polymerase beta subunit AC611_04935 PF10385 RNA polymerase beta subunit external 1 domain AC611_04940 PF04997 RNA polymerase Rpb1, domain 1 AC611_04940 PF04998 RNA polymerase Rpb1, domain 5 AC611_04940 PF05000 RNA polymerase Rpb1, domain 4 AC611_04940 PF04983 RNA polymerase Rpb1, domain 3 AC611_04940 PF00623 RNA polymerase Rpb1, domain 2 AC611_04945 PF00164 Ribosomal protein S12/S23 AC611_04950 PF00177 Ribosomal protein S7p/S5e AC611_04955 PF00679 Elongation factor G C-terminus AC611_04955 PF03144 Elongation factor Tu domain 2 AC611_04955 PF03764 Elongation factor G, domain IV AC611_04955 PF14492 Elongation Factor G, domain II AC611_04955 PF00009 Elongation factor Tu GTP binding domain AC611_04960 PF03144 Elongation factor Tu domain 2 AC611_04960 PF00009 Elongation factor Tu GTP binding domain AC611_04960 PF03143 Elongation factor Tu C-terminal domain AC611_04970 PF00872 Transposase, Mutator family AC611_04975 PF00338 Ribosomal protein S10p/S20e AC611_04980 PF00297 Ribosomal protein L3 AC611_04985 PF00573 Ribosomal protein L4/L1 family AC611_04990 PF00276 Ribosomal protein L23 AC611_04995 PF00181 Ribosomal Proteins L2, RNA binding domain AC611_04995 PF03947 Ribosomal Proteins L2, C-terminal domain AC611_05000 PF00203 Ribosomal protein S19 AC611_05005 PF00237 Ribosomal protein L22p/L17e AC611_05010 PF00189 Ribosomal protein S3, C-terminal domain AC611_05010 PF07650 KH domain AC611_05015 PF00252 Ribosomal protein L16p/L10e AC611_05020 PF00831 Ribosomal L29 protein AC611_05025 PF00366 Ribosomal protein S17 AC611_05030 PF00238 Ribosomal protein L14p/L23e AC611_05035 PF00467 KOW motif AC611_05035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AC611_05040 PF00673 ribosomal L5P family C-terminus AC611_05040 PF00281 Ribosomal protein L5 AC611_05045 PF00253 Ribosomal protein S14p/S29e AC611_05050 PF00410 Ribosomal protein S8 AC611_05055 PF00347 Ribosomal protein L6 AC611_05060 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AC611_05065 PF03719 Ribosomal protein S5, C-terminal domain AC611_05065 PF00333 Ribosomal protein S5, N-terminal domain AC611_05070 PF00327 Ribosomal protein L30p/L7e AC611_05075 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AC611_05080 PF00344 SecY translocase AC611_05085 PF00416 Ribosomal protein S13/S18 AC611_05090 PF00411 Ribosomal protein S11 AC611_05095 PF00163 Ribosomal protein S4/S9 N-terminal domain AC611_05095 PF01479 S4 domain AC611_05100 PF01000 RNA polymerase Rpb3/RpoA insert domain AC611_05100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AC611_05100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AC611_05105 PF01196 Ribosomal protein L17 AC611_05110 PF02600 Disulfide bond formation protein DsbB AC611_05130 PF01474 Class-II DAHP synthetase family AC611_05140 PF01425 Amidase AC611_05155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC611_05160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AC611_05160 PF00056 lactate/malate dehydrogenase, NAD binding domain AC611_05165 PF02798 Glutathione S-transferase, N-terminal domain AC611_05165 PF00043 Glutathione S-transferase, C-terminal domain AC611_05175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_05175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC611_05180 PF00107 Zinc-binding dehydrogenase AC611_05180 PF08240 Alcohol dehydrogenase GroES-like domain AC611_05185 PF00872 Transposase, Mutator family AC611_05190 PF05598 Transposase domain (DUF772) AC611_05190 PF01609 Transposase DDE domain AC611_05195 PF00691 OmpA family AC611_05195 PF00223 Photosystem I psaA/psaB protein AC611_05205 PF00849 RNA pseudouridylate synthase AC611_05215 PF00155 Aminotransferase class I and II AC611_05225 PF00528 Binding-protein-dependent transport system inner membrane component AC611_05230 PF00528 Binding-protein-dependent transport system inner membrane component AC611_05235 PF17850 CysA C-terminal regulatory domain AC611_05235 PF12857 TOBE-like domain AC611_05235 PF00005 ABC transporter AC611_05245 PF00872 Transposase, Mutator family AC611_05250 PF00107 Zinc-binding dehydrogenase AC611_05250 PF08240 Alcohol dehydrogenase GroES-like domain AC611_05260 PF05506 Domain of unknown function (DUF756) AC611_05260 PF04185 Phosphoesterase family AC611_05265 PF10459 Peptidase S46 AC611_05270 PF00300 Histidine phosphatase superfamily (branch 1) AC611_05280 PF02875 Mur ligase family, glutamate ligase domain AC611_05280 PF08245 Mur ligase middle domain AC611_05295 PF00156 Phosphoribosyl transferase domain AC611_05300 PF04305 Protein of unknown function (DUF455) AC611_05315 PF00149 Calcineurin-like phosphoesterase AC611_05320 PF01569 PAP2 superfamily AC611_05325 PF00534 Glycosyl transferases group 1 AC611_05325 PF13439 Glycosyltransferase Family 4 AC611_05330 PF02541 Ppx/GppA phosphatase family AC611_05335 PF02503 Polyphosphate kinase middle domain AC611_05335 PF17941 Polyphosphate kinase C-terminal domain 1 AC611_05335 PF13090 Polyphosphate kinase C-terminal domain 2 AC611_05335 PF13089 Polyphosphate kinase N-terminal domain AC611_05340 PF00989 PAS fold AC611_05340 PF00512 His Kinase A (phospho-acceptor) domain AC611_05340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_05340 PF11808 Phosphate regulon sensor protein PhoR AC611_05345 PF00486 Transcriptional regulatory protein, C terminal AC611_05345 PF00072 Response regulator receiver domain AC611_05350 PF13181 Tetratricopeptide repeat AC611_05350 PF01435 Peptidase family M48 AC611_05355 PF00462 Glutaredoxin AC611_05365 PF00180 Isocitrate/isopropylmalate dehydrogenase AC611_05365 PF18324 Hypothetical protein TT1725 AC611_05400 PF00872 Transposase, Mutator family AC611_05415 PF05698 Bacterial trigger factor protein (TF) C-terminus AC611_05415 PF05697 Bacterial trigger factor protein (TF) AC611_05420 PF00574 Clp protease AC611_05425 PF10431 C-terminal, D2-small domain, of ClpB protein AC611_05425 PF06689 ClpX C4-type zinc finger AC611_05425 PF07724 AAA domain (Cdc48 subfamily) AC611_05430 PF00004 ATPase family associated with various cellular activities (AAA) AC611_05430 PF05362 Lon protease (S16) C-terminal proteolytic domain AC611_05430 PF02190 ATP-dependent protease La (LON) substrate-binding domain AC611_05435 PF00216 Bacterial DNA-binding protein AC611_05460 PF05257 CHAP domain AC611_05460 PF01476 LysM domain AC611_05465 PF16123 Hydroxyacylglutathione hydrolase C-terminus AC611_05465 PF00753 Metallo-beta-lactamase superfamily AC611_05475 PF00075 RNase H AC611_05480 PF00929 Exonuclease AC611_05500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AC611_05510 PF00753 Metallo-beta-lactamase superfamily AC611_05510 PF12706 Beta-lactamase superfamily domain AC611_05515 PF06463 Molybdenum Cofactor Synthesis C AC611_05515 PF04055 Radical SAM superfamily AC611_05525 PF01967 MoaC family AC611_05530 PF02597 ThiS family AC611_05535 PF02391 MoaE protein AC611_05545 PF12169 DNA polymerase III subunits gamma and tau domain III AC611_05545 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AC611_05545 PF12170 DNA polymerase III tau subunit V interacting with alpha AC611_05550 PF02575 YbaB/EbfC DNA-binding family AC611_05555 PF02132 RecR protein AC611_05555 PF13662 Toprim domain AC611_05560 PF01230 HIT domain AC611_05570 PF01841 Transglutaminase-like superfamily AC611_05570 PF11992 Domain of unknown function (DUF3488) AC611_05570 PF13559 Domain of unknown function (DUF4129) AC611_05580 PF17863 AAA lid domain AC611_05580 PF07726 ATPase family associated with various cellular activities (AAA) AC611_05590 PF02545 Maf-like protein AC611_05595 PF02620 Large ribosomal RNA subunit accumulation protein YceD AC611_05600 PF01783 Ribosomal L32p protein family AC611_05605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC611_05605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC611_05615 PF00698 Acyl transferase domain AC611_05625 PF00550 Phosphopantetheine attachment site AC611_05630 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_05630 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_05635 PF00425 chorismate binding enzyme AC611_05635 PF04715 Anthranilate synthase component I, N terminal region AC611_05640 PF02618 YceG-like family AC611_05645 PF09115 DNA polymerase III, delta subunit, C terminal AC611_05675 PF00158 Sigma-54 interaction domain AC611_05675 PF06506 Propionate catabolism activator AC611_05675 PF02954 Bacterial regulatory protein, Fis family AC611_05685 PF00285 Citrate synthase, C-terminal domain AC611_05690 PF00694 Aconitase C-terminal domain AC611_05690 PF00330 Aconitase family (aconitate hydratase) AC611_05700 PF04303 PrpF protein AC611_05705 PF00593 TonB dependent receptor AC611_05705 PF07715 TonB-dependent Receptor Plug Domain AC611_05715 PF17962 Bacterial macroglobulin domain 6 AC611_05715 PF01835 MG2 domain AC611_05715 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AC611_05715 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AC611_05715 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AC611_05715 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AC611_05715 PF00207 Alpha-2-macroglobulin family AC611_05715 PF07703 Alpha-2-macroglobulin bait region domain AC611_05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_05735 PF00989 PAS fold AC611_05735 PF00512 His Kinase A (phospho-acceptor) domain AC611_05740 PF06832 Penicillin-Binding Protein C-terminus Family AC611_05740 PF00912 Transglycosylase AC611_05740 PF00905 Penicillin binding protein transpeptidase domain AC611_05750 PF08534 Redoxin AC611_05760 PF01556 DnaJ C terminal domain AC611_05760 PF00226 DnaJ domain AC611_05765 PF00072 Response regulator receiver domain AC611_05770 PF12221 Bacterial membrane protein N terminal AC611_05770 PF01145 SPFH domain / Band 7 family AC611_05775 PF01145 SPFH domain / Band 7 family AC611_05785 PF00709 Adenylosuccinate synthetase AC611_05790 PF11838 ERAP1-like C-terminal domain AC611_05790 PF01433 Peptidase family M1 domain AC611_05805 PF00440 Bacterial regulatory proteins, tetR family AC611_05855 PF01256 Carbohydrate kinase AC611_05865 PF00723 Glycosyl hydrolases family 15 AC611_05875 PF17678 Glycosyl hydrolase family 92 N-terminal domain AC611_05875 PF07971 Glycosyl hydrolase family 92 AC611_05900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_05925 PF17755 UvrA DNA-binding domain AC611_05935 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC611_05935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC611_05940 PF00941 FAD binding domain in molybdopterin dehydrogenase AC611_05940 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC611_05945 PF00111 2Fe-2S iron-sulfur cluster binding domain AC611_05945 PF01799 [2Fe-2S] binding domain AC611_05980 PF00717 Peptidase S24-like AC611_05980 PF01726 LexA DNA binding domain AC611_06000 PF14579 Helix-hairpin-helix motif AC611_06000 PF02811 PHP domain AC611_06000 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AC611_06000 PF07733 Bacterial DNA polymerase III alpha NTPase domain AC611_06005 PF00326 Prolyl oligopeptidase family AC611_06015 PF03169 OPT oligopeptide transporter protein AC611_06040 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC611_06040 PF07676 WD40-like Beta Propeller Repeat AC611_06040 PF00326 Prolyl oligopeptidase family AC611_06060 PF12833 Helix-turn-helix domain AC611_06060 PF02311 AraC-like ligand binding domain AC611_06075 PF00872 Transposase, Mutator family AC611_06085 PF00199 Catalase AC611_06085 PF06628 Catalase-related immune-responsive AC611_06085 PF18011 C-terminal domain found in long catalases AC611_06090 PF00248 Aldo/keto reductase family AC611_06095 PF00135 Carboxylesterase family AC611_06100 PF02347 Glycine cleavage system P-protein AC611_06120 PF00005 ABC transporter AC611_06120 PF00664 ABC transporter transmembrane region AC611_06120 PF03412 Peptidase C39 family AC611_06125 PF07690 Major Facilitator Superfamily AC611_06135 PF13333 Integrase core domain AC611_06135 PF13276 HTH-like domain AC611_06135 PF00665 Integrase core domain AC611_06165 PF08019 Phosphoethanolamine transferase EptA/EptB AC611_06165 PF00884 Sulfatase AC611_06180 PF00072 Response regulator receiver domain AC611_06180 PF00486 Transcriptional regulatory protein, C terminal AC611_06185 PF00512 His Kinase A (phospho-acceptor) domain AC611_06185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06185 PF08521 Two-component sensor kinase N-terminal AC611_06195 PF03776 Septum formation topological specificity factor MinE AC611_06200 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC611_06205 PF05209 Septum formation inhibitor MinC, N-terminal domain AC611_06205 PF03775 Septum formation inhibitor MinC, C-terminal domain AC611_06215 PF07730 Histidine kinase AC611_06220 PF00196 Bacterial regulatory proteins, luxR family AC611_06220 PF00072 Response regulator receiver domain AC611_06240 PF00730 HhH-GPD superfamily base excision DNA repair protein AC611_06265 PF02222 ATP-grasp domain AC611_06275 PF04376 Arginine-tRNA-protein transferase, N terminus AC611_06275 PF04377 Arginine-tRNA-protein transferase, C terminus AC611_06290 PF08281 Sigma-70, region 4 AC611_06290 PF04542 Sigma-70 region 2 AC611_06305 PF00378 Enoyl-CoA hydratase/isomerase AC611_06320 PF17755 UvrA DNA-binding domain AC611_06320 PF00005 ABC transporter AC611_06320 PF17760 UvrA interaction domain AC611_06325 PF00829 Ribosomal prokaryotic L21 protein AC611_06330 PF01016 Ribosomal L27 protein AC611_06335 PF01018 GTP1/OBG AC611_06335 PF01926 50S ribosome-binding GTPase AC611_06340 PF01649 Ribosomal protein S20 AC611_06345 PF03023 Lipid II flippase MurJ AC611_06350 PF06574 FAD synthetase AC611_06350 PF01687 Riboflavin kinase AC611_06355 PF00133 tRNA synthetases class I (I, L, M and V) AC611_06355 PF06827 Zinc finger found in FPG and IleRS AC611_06355 PF08264 Anticodon-binding domain of tRNA AC611_06360 PF01252 Signal peptidase (SPase) II AC611_06365 PF02401 LytB protein AC611_06465 PF16793 RepB DNA-primase from phage plasmid AC611_06465 PF03389 MobA/MobL family AC611_06470 PF13091 PLD-like domain AC611_06470 PF13087 AAA domain AC611_06500 PF00589 Phage integrase family AC611_06505 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC611_06505 PF06481 COX Aromatic Rich Motif AC611_06510 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC611_06515 PF00510 Cytochrome c oxidase subunit III AC611_06520 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AC611_06530 PF18073 Rubredoxin metal binding domain AC611_06535 PF05656 Protein of unknown function (DUF805) AC611_06545 PF12833 Helix-turn-helix domain AC611_06550 PF00183 Hsp90 protein AC611_06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06560 PF08678 Rsbr N terminal AC611_06560 PF01740 STAS domain AC611_06565 PF01740 STAS domain AC611_06580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06580 PF00072 Response regulator receiver domain AC611_06580 PF00672 HAMP domain AC611_06580 PF01627 Hpt domain AC611_06580 PF00512 His Kinase A (phospho-acceptor) domain AC611_06580 PF17149 Periplasmic sensor domain found in signal transduction proteins AC611_06585 PF13188 PAS domain AC611_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06585 PF00072 Response regulator receiver domain AC611_06585 PF00512 His Kinase A (phospho-acceptor) domain AC611_06585 PF08448 PAS fold AC611_06590 PF04616 Glycosyl hydrolases family 43 AC611_06590 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC611_06595 PF00593 TonB dependent receptor AC611_06595 PF07715 TonB-dependent Receptor Plug Domain AC611_06600 PF00085 Thioredoxin AC611_06605 PF07237 Protein of unknown function (DUF1428) AC611_06610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06610 PF02702 Osmosensitive K+ channel His kinase sensor domain AC611_06610 PF00512 His Kinase A (phospho-acceptor) domain AC611_06610 PF13493 Domain of unknown function (DUF4118) AC611_06610 PF13492 GAF domain AC611_06615 PF01339 CheB methylesterase AC611_06620 PF03705 CheR methyltransferase, all-alpha domain AC611_06620 PF01739 CheR methyltransferase, SAM binding domain AC611_06625 PF00072 Response regulator receiver domain AC611_06625 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC611_06625 PF00672 HAMP domain AC611_06625 PF01627 Hpt domain AC611_06625 PF00512 His Kinase A (phospho-acceptor) domain AC611_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_06630 PF00072 Response regulator receiver domain AC611_06630 PF13426 PAS domain AC611_06635 PF00072 Response regulator receiver domain AC611_06640 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AC611_06650 PF01263 Aldose 1-epimerase AC611_06655 PF01578 Cytochrome C assembly protein AC611_06660 PF00448 SRP54-type protein, GTPase domain AC611_06660 PF02978 Signal peptide binding domain AC611_06660 PF02881 SRP54-type protein, helical bundle domain AC611_06670 PF03060 Nitronate monooxygenase AC611_06675 PF01063 Amino-transferase class IV AC611_06680 PF00886 Ribosomal protein S16 AC611_06685 PF05239 PRC-barrel domain AC611_06685 PF01782 RimM N-terminal domain AC611_06690 PF01746 tRNA (Guanine-1)-methyltransferase AC611_06695 PF01245 Ribosomal protein L19 AC611_06700 PF01554 MatE AC611_06720 PF01479 S4 domain AC611_06725 PF00141 Peroxidase AC611_06735 PF05190 MutS family domain IV AC611_06735 PF05192 MutS domain III AC611_06735 PF05188 MutS domain II AC611_06735 PF01624 MutS domain I AC611_06735 PF00488 MutS domain V AC611_06740 PF13333 Integrase core domain AC611_06740 PF00665 Integrase core domain AC611_06740 PF13276 HTH-like domain AC611_06745 PF01527 Transposase AC611_06750 PF01527 Transposase AC611_06755 PF13276 HTH-like domain AC611_06755 PF13683 Integrase core domain AC611_06760 PF13683 Integrase core domain AC611_06760 PF13276 HTH-like domain AC611_06765 PF01527 Transposase AC611_06785 PF00703 Glycosyl hydrolases family 2 AC611_06785 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AC611_06785 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC611_06785 PF16355 Domain of unknown function (DUF4982) AC611_06785 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC611_06790 PF07745 Glycosyl hydrolase family 53 AC611_06800 PF01381 Helix-turn-helix AC611_06800 PF06114 IrrE N-terminal-like domain AC611_06800 PF09856 Predicted transcriptional regulator (DUF2083) AC611_06805 PF00171 Aldehyde dehydrogenase family AC611_06810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_06810 PF02770 Acyl-CoA dehydrogenase, middle domain AC611_06810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_06815 PF00378 Enoyl-CoA hydratase/isomerase AC611_06820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC611_06820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC611_06820 PF00378 Enoyl-CoA hydratase/isomerase AC611_06825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AC611_06825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AC611_06830 PF01545 Cation efflux family AC611_06840 PF13181 Tetratricopeptide repeat AC611_06850 PF13181 Tetratricopeptide repeat AC611_06855 PF00593 TonB dependent receptor AC611_06855 PF07715 TonB-dependent Receptor Plug Domain AC611_06860 PF00378 Enoyl-CoA hydratase/isomerase AC611_06860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC611_06860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC611_06865 PF08281 Sigma-70, region 4 AC611_06865 PF04542 Sigma-70 region 2 AC611_06875 PF13180 PDZ domain AC611_06880 PF06421 GTP-binding protein LepA C-terminus AC611_06880 PF03144 Elongation factor Tu domain 2 AC611_06880 PF00009 Elongation factor Tu GTP binding domain AC611_06880 PF00679 Elongation factor G C-terminus AC611_06885 PF10502 Signal peptidase, peptidase S26 AC611_06895 PF14622 Ribonuclease-III-like AC611_06895 PF00035 Double-stranded RNA binding motif AC611_06900 PF07650 KH domain AC611_06900 PF01926 50S ribosome-binding GTPase AC611_06905 PF02565 Recombination protein O C terminal AC611_06905 PF11967 Recombination protein O N terminal AC611_06915 PF05958 tRNA (Uracil-5-)-methyltransferase AC611_06925 PF01323 DSBA-like thioredoxin domain AC611_06930 PF01593 Flavin containing amine oxidoreductase AC611_06935 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AC611_06940 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_06950 PF01048 Phosphorylase superfamily AC611_06955 PF00313 'Cold-shock' DNA-binding domain AC611_06960 PF01494 FAD binding domain AC611_06970 PF00270 DEAD/DEAH box helicase AC611_06970 PF08494 DEAD/H associated AC611_06970 PF00271 Helicase conserved C-terminal domain AC611_06975 PF01068 ATP dependent DNA ligase domain AC611_06975 PF04679 ATP dependent DNA ligase C terminal region AC611_06975 PF04675 DNA ligase N terminus AC611_06985 PF04675 DNA ligase N terminus AC611_06985 PF01068 ATP dependent DNA ligase domain AC611_06985 PF04679 ATP dependent DNA ligase C terminal region AC611_07000 PF00990 Diguanylate cyclase, GGDEF domain AC611_07000 PF00072 Response regulator receiver domain AC611_07015 PF00108 Thiolase, N-terminal domain AC611_07015 PF02803 Thiolase, C-terminal domain AC611_07020 PF03797 Autotransporter beta-domain AC611_07020 PF12951 Passenger-associated-transport-repeat AC611_07020 PF00082 Subtilase family AC611_07025 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AC611_07025 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AC611_07035 PF01863 Protein of unknown function DUF45 AC611_07040 PF07043 Protein of unknown function (DUF1328) AC611_07050 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC611_07075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC611_07085 PF08274 PhnA Zinc-Ribbon AC611_07085 PF03831 PhnA domain AC611_07095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AC611_07100 PF07690 Major Facilitator Superfamily AC611_07135 PF09924 Uncharacterised conserved protein (DUF2156) AC611_07135 PF03706 Lysylphosphatidylglycerol synthase TM region AC611_07145 PF01042 Endoribonuclease L-PSP AC611_07190 PF04542 Sigma-70 region 2 AC611_07190 PF04545 Sigma-70, region 4 AC611_07210 PF04060 Putative Fe-S cluster AC611_07220 PF01588 Putative tRNA binding domain AC611_07220 PF09334 tRNA synthetases class I (M) AC611_07240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC611_07255 PF00324 Amino acid permease AC611_07260 PF02574 Homocysteine S-methyltransferase AC611_07270 PF02592 Putative vitamin uptake transporter AC611_07290 PF03551 Transcriptional regulator PadR-like family AC611_07325 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AC611_07330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AC611_07330 PF07733 Bacterial DNA polymerase III alpha NTPase domain AC611_07330 PF01336 OB-fold nucleic acid binding domain AC611_07330 PF14579 Helix-hairpin-helix motif AC611_07330 PF02811 PHP domain AC611_07335 PF01351 Ribonuclease HII AC611_07340 PF02684 Lipid-A-disaccharide synthetase AC611_07345 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AC611_07345 PF00132 Bacterial transferase hexapeptide (six repeats) AC611_07350 PF07977 FabA-like domain AC611_07355 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AC611_07355 PF00132 Bacterial transferase hexapeptide (six repeats) AC611_07365 PF01103 Surface antigen AC611_07365 PF07244 Surface antigen variable number repeat AC611_07370 PF02163 Peptidase family M50 AC611_07370 PF17820 PDZ domain AC611_07375 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AC611_07375 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AC611_07375 PF13288 DXP reductoisomerase C-terminal domain AC611_07385 PF01255 Putative undecaprenyl diphosphate synthase AC611_07390 PF01765 Ribosome recycling factor AC611_07395 PF00696 Amino acid kinase family AC611_07400 PF00072 Response regulator receiver domain AC611_07400 PF00990 Diguanylate cyclase, GGDEF domain AC611_07405 PF00889 Elongation factor TS AC611_07410 PF00318 Ribosomal protein S2 AC611_07445 PF00557 Metallopeptidase family M24 AC611_07450 PF01909 Nucleotidyltransferase domain AC611_07450 PF01966 HD domain AC611_07450 PF08335 GlnD PII-uridylyltransferase AC611_07455 PF00132 Bacterial transferase hexapeptide (six repeats) AC611_07455 PF14602 Hexapeptide repeat of succinyl-transferase AC611_07455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AC611_07460 PF03960 ArsC family AC611_07465 PF07687 Peptidase dimerisation domain AC611_07465 PF01546 Peptidase family M20/M25/M40 AC611_07470 PF13537 Glutamine amidotransferase domain AC611_07470 PF00733 Asparagine synthase AC611_07485 PF00593 TonB dependent receptor AC611_07485 PF07715 TonB-dependent Receptor Plug Domain AC611_07490 PF01804 Penicillin amidase AC611_07495 PF00210 Ferritin-like domain AC611_07515 PF00521 DNA gyrase/topoisomerase IV, subunit A AC611_07515 PF03989 DNA gyrase C-terminal domain, beta-propeller AC611_07530 PF01527 Transposase AC611_07535 PF13333 Integrase core domain AC611_07535 PF00665 Integrase core domain AC611_07535 PF13276 HTH-like domain AC611_07540 PF00872 Transposase, Mutator family AC611_07570 PF02321 Outer membrane efflux protein AC611_07575 PF00529 HlyD membrane-fusion protein of T1SS AC611_07575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_07580 PF07690 Major Facilitator Superfamily AC611_07600 PF14310 Fibronectin type III-like domain AC611_07600 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_07600 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC611_07610 PF00854 POT family AC611_07635 PF12802 MarR family AC611_07640 PF01432 Peptidase family M3 AC611_07645 PF00255 Glutathione peroxidase AC611_07650 PF00970 Oxidoreductase FAD-binding domain AC611_07650 PF00175 Oxidoreductase NAD-binding domain AC611_07655 PF00005 ABC transporter AC611_07660 PF05683 Fumarase C-terminus AC611_07660 PF05681 Fumarate hydratase (Fumerase) AC611_07675 PF00484 Carbonic anhydrase AC611_07680 PF02253 Phospholipase A1 AC611_07690 PF00313 'Cold-shock' DNA-binding domain AC611_07705 PF00899 ThiF family AC611_07710 PF01026 TatD related DNase AC611_07725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_07725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_07725 PF02770 Acyl-CoA dehydrogenase, middle domain AC611_07735 PF13417 Glutathione S-transferase, N-terminal domain AC611_07740 PF13537 Glutamine amidotransferase domain AC611_07740 PF00733 Asparagine synthase AC611_07745 PF03358 NADPH-dependent FMN reductase AC611_07750 PF03796 DnaB-like helicase C terminal domain AC611_07750 PF00772 DnaB-like helicase N terminal domain AC611_07755 PF00875 DNA photolyase AC611_07755 PF03441 FAD binding domain of DNA photolyase AC611_07760 PF05736 OprF membrane domain AC611_07760 PF00691 OmpA family AC611_07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_07765 PF03466 LysR substrate binding domain AC611_07780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_07780 PF00529 HlyD membrane-fusion protein of T1SS AC611_07785 PF00873 AcrB/AcrD/AcrF family AC611_07790 PF00106 short chain dehydrogenase AC611_07795 PF02321 Outer membrane efflux protein AC611_07800 PF08448 PAS fold AC611_07800 PF00990 Diguanylate cyclase, GGDEF domain AC611_07810 PF00990 Diguanylate cyclase, GGDEF domain AC611_07830 PF01668 SmpB protein AC611_07835 PF03364 Polyketide cyclase / dehydrase and lipid transport AC611_07840 PF03658 RnfH family Ubiquitin AC611_07845 PF04355 SmpA / OmlA family AC611_07850 PF01475 Ferric uptake regulator family AC611_07855 PF02463 RecF/RecN/SMC N terminal domain AC611_07860 PF01628 HrcA protein C terminal domain AC611_07860 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AC611_07865 PF01025 GrpE AC611_07870 PF00012 Hsp70 protein AC611_07875 PF01556 DnaJ C terminal domain AC611_07875 PF00226 DnaJ domain AC611_07875 PF00684 DnaJ central domain AC611_07880 PF08543 Phosphomethylpyrimidine kinase AC611_07905 PF00664 ABC transporter transmembrane region AC611_07905 PF00005 ABC transporter AC611_07905 PF03412 Peptidase C39 family AC611_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_07910 PF03466 LysR substrate binding domain AC611_07915 PF00664 ABC transporter transmembrane region AC611_07915 PF00005 ABC transporter AC611_07920 PF01205 Uncharacterized protein family UPF0029 AC611_07925 PF03641 Possible lysine decarboxylase AC611_07930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC611_07930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_07935 PF02817 e3 binding domain AC611_07935 PF00364 Biotin-requiring enzyme AC611_07935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC611_07940 PF02779 Transketolase, pyrimidine binding domain AC611_07940 PF16870 2-oxoglutarate dehydrogenase C-terminal AC611_07940 PF16078 2-oxoglutarate dehydrogenase N-terminus AC611_07940 PF00676 Dehydrogenase E1 component AC611_07950 PF08007 Cupin superfamily protein AC611_07960 PF00206 Lyase AC611_07960 PF08328 Adenylosuccinate lyase C-terminal AC611_07970 PF00571 CBS domain AC611_07970 PF03471 Transporter associated domain AC611_07970 PF01595 Cyclin M transmembrane N-terminal domain AC611_07975 PF10415 Fumarase C C-terminus AC611_07975 PF00206 Lyase AC611_08000 PF00005 ABC transporter AC611_08005 PF00392 Bacterial regulatory proteins, gntR family AC611_08010 PF00255 Glutathione peroxidase AC611_08015 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC611_08015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC611_08020 PF04102 SlyX AC611_08035 PF00356 Bacterial regulatory proteins, lacI family AC611_08040 PF07690 Major Facilitator Superfamily AC611_08045 PF00294 pfkB family carbohydrate kinase AC611_08055 PF02574 Homocysteine S-methyltransferase AC611_08055 PF00809 Pterin binding enzyme AC611_08055 PF02310 B12 binding domain AC611_08055 PF02607 B12 binding domain AC611_08055 PF02965 Vitamin B12 dependent methionine synthase, activation domain AC611_08060 PF02607 B12 binding domain AC611_08060 PF02310 B12 binding domain AC611_08060 PF02965 Vitamin B12 dependent methionine synthase, activation domain AC611_08060 PF00809 Pterin binding enzyme AC611_08060 PF02574 Homocysteine S-methyltransferase AC611_08065 PF01209 ubiE/COQ5 methyltransferase family AC611_08070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_08070 PF02770 Acyl-CoA dehydrogenase, middle domain AC611_08070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_08085 PF00773 RNB domain AC611_08085 PF17876 Cold shock domain AC611_08085 PF08461 Ribonuclease R winged-helix domain AC611_08085 PF08206 Ribonuclease B OB domain AC611_08085 PF00575 S1 RNA binding domain AC611_08095 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC611_08095 PF00588 SpoU rRNA Methylase family AC611_08110 PF00929 Exonuclease AC611_08120 PF01895 PhoU domain AC611_08125 PF00005 ABC transporter AC611_08130 PF00528 Binding-protein-dependent transport system inner membrane component AC611_08135 PF00528 Binding-protein-dependent transport system inner membrane component AC611_08140 PF12849 PBP superfamily domain AC611_08145 PF12849 PBP superfamily domain AC611_08160 PF00484 Carbonic anhydrase AC611_08165 PF01740 STAS domain AC611_08165 PF00916 Sulfate permease family AC611_08170 PF10576 Iron-sulfur binding domain of endonuclease III AC611_08170 PF00730 HhH-GPD superfamily base excision DNA repair protein AC611_08170 PF00633 Helix-hairpin-helix motif AC611_08180 PF00378 Enoyl-CoA hydratase/isomerase AC611_08185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AC611_08185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC611_08190 PF00293 NUDIX domain AC611_08195 PF00581 Rhodanese-like domain AC611_08235 PF01170 Putative RNA methylase family UPF0020 AC611_08235 PF02926 THUMP domain AC611_08235 PF10672 S-adenosylmethionine-dependent methyltransferase AC611_08240 PF01513 ATP-NAD kinase AC611_08260 PF00929 Exonuclease AC611_08260 PF08411 Exonuclease C-terminal AC611_08265 PF01494 FAD binding domain AC611_08270 PF00266 Aminotransferase class-V AC611_08280 PF06052 3-hydroxyanthranilic acid dioxygenase AC611_08285 PF00484 Carbonic anhydrase AC611_08330 PF00072 Response regulator receiver domain AC611_08330 PF00196 Bacterial regulatory proteins, luxR family AC611_08360 PF01336 OB-fold nucleic acid binding domain AC611_08360 PF00152 tRNA synthetases class II (D, K and N) AC611_08365 PF01521 Iron-sulphur cluster biosynthesis AC611_08370 PF01250 Ribosomal protein S6 AC611_08375 PF01084 Ribosomal protein S18 AC611_08380 PF01281 Ribosomal protein L9, N-terminal domain AC611_08380 PF03948 Ribosomal protein L9, C-terminal domain AC611_08385 PF02463 RecF/RecN/SMC N terminal domain AC611_08390 PF04354 ZipA, C-terminal FtsZ-binding domain AC611_08400 PF00155 Aminotransferase class I and II AC611_08405 PF12826 Helix-hairpin-helix motif AC611_08405 PF03120 NAD-dependent DNA ligase OB-fold domain AC611_08405 PF00533 BRCA1 C Terminus (BRCT) domain AC611_08405 PF01653 NAD-dependent DNA ligase adenylation domain AC611_08405 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AC611_08410 PF00152 tRNA synthetases class II (D, K and N) AC611_08420 PF01008 Initiation factor 2 subunit family AC611_08425 PF00521 DNA gyrase/topoisomerase IV, subunit A AC611_08425 PF03989 DNA gyrase C-terminal domain, beta-propeller AC611_08430 PF13360 PQQ-like domain AC611_08440 PF17391 Urocanase N-terminal domain AC611_08440 PF01175 Urocanase Rossmann-like domain AC611_08440 PF17392 Urocanase C-terminal domain AC611_08455 PF00221 Aromatic amino acid lyase AC611_08460 PF07969 Amidohydrolase family AC611_08475 PF07702 UTRA domain AC611_08475 PF00392 Bacterial regulatory proteins, gntR family AC611_08500 PF01794 Ferric reductase like transmembrane component AC611_08505 PF00174 Oxidoreductase molybdopterin binding domain AC611_08510 PF00266 Aminotransferase class-V AC611_08515 PF01842 ACT domain AC611_08515 PF00800 Prephenate dehydratase AC611_08515 PF01817 Chorismate mutase type II AC611_08520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC611_08530 PF03544 Gram-negative bacterial TonB protein C-terminal AC611_08535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC611_08535 PF02403 Seryl-tRNA synthetase N-terminal domain AC611_08540 PF02525 Flavodoxin-like fold AC611_08545 PF03466 LysR substrate binding domain AC611_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_08610 PF00072 Response regulator receiver domain AC611_08610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_08610 PF13426 PAS domain AC611_08620 PF06745 KaiC AC611_08625 PF00512 His Kinase A (phospho-acceptor) domain AC611_08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_08625 PF00072 Response regulator receiver domain AC611_08625 PF13188 PAS domain AC611_08625 PF08448 PAS fold AC611_08635 PF03918 Cytochrome C biogenesis protein AC611_08640 PF08534 Redoxin AC611_08645 PF01578 Cytochrome C assembly protein AC611_08645 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AC611_08650 PF03100 CcmE AC611_08655 PF04995 Heme exporter protein D (CcmD) AC611_08660 PF01578 Cytochrome C assembly protein AC611_08665 PF00082 Subtilase family AC611_08675 PF04542 Sigma-70 region 2 AC611_08675 PF08281 Sigma-70, region 4 AC611_08685 PF00034 Cytochrome c AC611_08700 PF05523 WxcM-like, C-terminal AC611_08720 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC611_08725 PF01943 Polysaccharide biosynthesis protein AC611_08730 PF00535 Glycosyl transferase family 2 AC611_08745 PF08241 Methyltransferase domain AC611_08780 PF00005 ABC transporter AC611_08785 PF00664 ABC transporter transmembrane region AC611_08785 PF00005 ABC transporter AC611_08790 PF07690 Major Facilitator Superfamily AC611_08795 PF00296 Luciferase-like monooxygenase AC611_08810 PF03471 Transporter associated domain AC611_08810 PF00571 CBS domain AC611_08810 PF01595 Cyclin M transmembrane N-terminal domain AC611_08820 PF01384 Phosphate transporter family AC611_08835 PF00204 DNA gyrase B AC611_08835 PF00986 DNA gyrase B subunit, carboxyl terminus AC611_08835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_08835 PF01751 Toprim domain AC611_08845 PF00117 Glutamine amidotransferase class-I AC611_08845 PF06418 CTP synthase N-terminus AC611_08850 PF00793 DAHP synthetase I family AC611_08860 PF00113 Enolase, C-terminal TIM barrel domain AC611_08860 PF03952 Enolase, N-terminal domain AC611_08865 PF04977 Septum formation initiator AC611_08870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AC611_08875 PF02542 YgbB family AC611_08880 PF01142 tRNA pseudouridine synthase D (TruD) AC611_08885 PF01713 Smr domain AC611_08890 PF01975 Survival protein SurE AC611_08900 PF09335 SNARE associated Golgi protein AC611_08905 PF01551 Peptidase family M23 AC611_08905 PF01476 LysM domain AC611_08910 PF04430 Protein of unknown function (DUF498/DUF598) AC611_08915 PF01985 CRS1 / YhbY (CRM) domain AC611_08920 PF01728 FtsJ-like methyltransferase AC611_08925 PF00004 ATPase family associated with various cellular activities (AAA) AC611_08925 PF17862 AAA+ lid domain AC611_08925 PF06480 FtsH Extracellular AC611_08925 PF01434 Peptidase family M41 AC611_08930 PF00809 Pterin binding enzyme AC611_08940 PF17209 Hfq protein AC611_08945 PF01926 50S ribosome-binding GTPase AC611_08945 PF16360 GTP-binding GTPase Middle Region AC611_08945 PF13167 GTP-binding GTPase N-terminal AC611_08950 PF02464 Competence-damaged protein AC611_08955 PF03109 ABC1 family AC611_08960 PF01726 LexA DNA binding domain AC611_08960 PF00717 Peptidase S24-like AC611_08965 PF00154 recA bacterial DNA recombination protein AC611_08970 PF02631 RecX family AC611_08975 PF01411 tRNA synthetases class II (A) AC611_08975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC611_08975 PF02272 DHHA1 domain AC611_08980 PF02599 Global regulator protein family AC611_08990 PF13426 PAS domain AC611_08990 PF08447 PAS fold AC611_08990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_09005 PF03466 LysR substrate binding domain AC611_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_09030 PF08543 Phosphomethylpyrimidine kinase AC611_09045 PF13638 PIN domain AC611_09045 PF02562 PhoH-like protein AC611_09050 PF00578 AhpC/TSA family AC611_09065 PF00701 Dihydrodipicolinate synthetase family AC611_09075 PF11953 Domain of unknown function (DUF3470) AC611_09075 PF00037 4Fe-4S binding domain AC611_09080 PF05035 2-keto-3-deoxy-galactonokinase AC611_09085 PF08450 SMP-30/Gluconolactonase/LRE-like region AC611_09090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC611_09090 PF13378 Enolase C-terminal domain-like AC611_09095 PF01081 KDPG and KHG aldolase AC611_09105 PF03466 LysR substrate binding domain AC611_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_09120 PF03442 Carbohydrate binding domain X2 AC611_09120 PF00942 Cellulose binding domain AC611_09135 PF01055 Glycosyl hydrolases family 31 AC611_09135 PF16338 Domain of unknown function (DUF4968) AC611_09135 PF17137 Domain of unknown function (DUF5110) AC611_09145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC611_09145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC611_09155 PF00083 Sugar (and other) transporter AC611_09165 PF00872 Transposase, Mutator family AC611_09180 PF01520 N-acetylmuramoyl-L-alanine amidase AC611_09185 PF02649 Type I GTP cyclohydrolase folE2 AC611_09200 PF12627 Probable RNA and SrmB- binding site of polymerase A AC611_09200 PF12626 Polymerase A arginine-rich C-terminus AC611_09200 PF01743 Poly A polymerase head domain AC611_09205 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AC611_09210 PF02548 Ketopantoate hydroxymethyltransferase AC611_09215 PF02569 Pantoate-beta-alanine ligase AC611_09220 PF02261 Aspartate decarboxylase AC611_09225 PF00342 Phosphoglucose isomerase AC611_09245 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC611_09245 PF14310 Fibronectin type III-like domain AC611_09245 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_09250 PF00474 Sodium:solute symporter family AC611_09255 PF00990 Diguanylate cyclase, GGDEF domain AC611_09255 PF01590 GAF domain AC611_09255 PF00563 EAL domain AC611_09255 PF00360 Phytochrome region AC611_09265 PF00150 Cellulase (glycosyl hydrolase family 5) AC611_09265 PF02013 Cellulose or protein binding domain AC611_09270 PF00072 Response regulator receiver domain AC611_09280 PF04551 GcpE protein AC611_09285 PF01569 PAP2 superfamily AC611_09290 PF08946 Osmosensory transporter coiled coil AC611_09290 PF00083 Sugar (and other) transporter AC611_09295 PF01177 Asp/Glu/Hydantoin racemase AC611_09300 PF00892 EamA-like transporter family AC611_09305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AC611_09305 PF01565 FAD binding domain AC611_09310 PF01180 Dihydroorotate dehydrogenase AC611_09325 PF00171 Aldehyde dehydrogenase family AC611_09340 PF00872 Transposase, Mutator family AC611_09345 PF00872 Transposase, Mutator family AC611_09350 PF00128 Alpha amylase, catalytic domain AC611_09365 PF14508 Glycosyl-hydrolase 97 N-terminal AC611_09365 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC611_09365 PF10566 Glycoside hydrolase 97 AC611_09380 PF00686 Starch binding domain AC611_09380 PF00128 Alpha amylase, catalytic domain AC611_09385 PF00356 Bacterial regulatory proteins, lacI family AC611_09390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AC611_09390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC611_09390 PF02824 TGS domain AC611_09390 PF03129 Anticodon binding domain AC611_09395 PF05198 Translation initiation factor IF-3, N-terminal domain AC611_09395 PF00707 Translation initiation factor IF-3, C-terminal domain AC611_09400 PF01632 Ribosomal protein L35 AC611_09405 PF00453 Ribosomal protein L20 AC611_09410 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AC611_09410 PF01409 tRNA synthetases class II core domain (F) AC611_09415 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AC611_09415 PF01588 Putative tRNA binding domain AC611_09415 PF03147 Ferredoxin-fold anticodon binding domain AC611_09415 PF03483 B3/4 domain AC611_09415 PF03484 tRNA synthetase B5 domain AC611_09420 PF00216 Bacterial DNA-binding protein AC611_09425 PF13411 MerR HTH family regulatory protein AC611_09445 PF02397 Bacterial sugar transferase AC611_09465 PF13439 Glycosyltransferase Family 4 AC611_09465 PF00534 Glycosyl transferases group 1 AC611_09475 PF14667 Polysaccharide biosynthesis C-terminal domain AC611_09490 PF03808 Glycosyl transferase WecB/TagA/CpsF family AC611_09505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC611_09505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC611_09515 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AC611_09535 PF02780 Transketolase, C-terminal domain AC611_09535 PF02779 Transketolase, pyrimidine binding domain AC611_09535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AC611_09545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_09545 PF02770 Acyl-CoA dehydrogenase, middle domain AC611_09545 PF12806 Acetyl-CoA dehydrogenase C-terminal like AC611_09545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_09555 PF08212 Lipocalin-like domain AC611_09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_09585 PF00072 Response regulator receiver domain AC611_09585 PF13426 PAS domain AC611_09600 PF04362 Bacterial Fe(2+) trafficking AC611_09605 PF14815 NUDIX domain AC611_09605 PF00730 HhH-GPD superfamily base excision DNA repair protein AC611_09605 PF00633 Helix-hairpin-helix motif AC611_09605 PF10576 Iron-sulfur binding domain of endonuclease III AC611_09610 PF02881 SRP54-type protein, helical bundle domain AC611_09610 PF00448 SRP54-type protein, GTPase domain AC611_09620 PF05544 Proline racemase AC611_09625 PF01266 FAD dependent oxidoreductase AC611_09635 PF04324 BFD-like [2Fe-2S] binding domain AC611_09635 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_09640 PF00701 Dihydrodipicolinate synthetase family AC611_09645 PF00171 Aldehyde dehydrogenase family AC611_09650 PF00557 Metallopeptidase family M24 AC611_09650 PF01321 Creatinase/Prolidase N-terminal domain AC611_09665 PF13520 Amino acid permease AC611_09690 PF09286 Pro-kumamolisin, activation domain AC611_09690 PF00082 Subtilase family AC611_09700 PF07715 TonB-dependent Receptor Plug Domain AC611_09700 PF00593 TonB dependent receptor AC611_09710 PF07532 Bacterial Ig-like domain (group 4) AC611_09780 PF00872 Transposase, Mutator family AC611_09815 PF08479 POTRA domain, ShlB-type AC611_09815 PF17287 POTRA domain AC611_09815 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AC611_09825 PF00872 Transposase, Mutator family AC611_09835 PF13683 Integrase core domain AC611_09835 PF13276 HTH-like domain AC611_09840 PF01527 Transposase AC611_09845 PF03073 TspO/MBR family AC611_09850 PF00872 Transposase, Mutator family AC611_09855 PF00742 Homoserine dehydrogenase AC611_09855 PF13840 ACT domain AC611_09855 PF01842 ACT domain AC611_09855 PF00696 Amino acid kinase family AC611_09855 PF03447 Homoserine dehydrogenase, NAD binding domain AC611_09860 PF08544 GHMP kinases C terminal AC611_09860 PF00288 GHMP kinases N terminal domain AC611_09870 PF07519 Tannase and feruloyl esterase AC611_09880 PF00291 Pyridoxal-phosphate dependent enzyme AC611_09880 PF14821 Threonine synthase N terminus AC611_09890 PF13545 Crp-like helix-turn-helix domain AC611_09890 PF00027 Cyclic nucleotide-binding domain AC611_09895 PF03129 Anticodon binding domain AC611_09895 PF13393 Histidyl-tRNA synthetase AC611_09910 PF01634 ATP phosphoribosyltransferase AC611_09910 PF08029 HisG, C-terminal domain AC611_09915 PF00815 Histidinol dehydrogenase AC611_09920 PF00155 Aminotransferase class I and II AC611_09925 PF00475 Imidazoleglycerol-phosphate dehydratase AC611_09930 PF00117 Glutamine amidotransferase class-I AC611_09935 PF00977 Histidine biosynthesis protein AC611_09940 PF00977 Histidine biosynthesis protein AC611_09945 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AC611_09945 PF01502 Phosphoribosyl-AMP cyclohydrolase AC611_09965 PF03079 ARD/ARD' family AC611_09970 PF00596 Class II Aldolase and Adducin N-terminal domain AC611_09975 PF13520 Amino acid permease AC611_09980 PF13520 Amino acid permease AC611_09990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC611_09990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC611_09995 PF02913 FAD linked oxidases, C-terminal domain AC611_09995 PF01565 FAD binding domain AC611_10015 PF01132 Elongation factor P (EF-P) OB domain AC611_10015 PF08207 Elongation factor P (EF-P) KOW-like domain AC611_10015 PF09285 Elongation factor P, C-terminal AC611_10020 PF00106 short chain dehydrogenase AC611_10025 PF00682 HMGL-like AC611_10035 PF00378 Enoyl-CoA hydratase/isomerase AC611_10045 PF02421 Ferrous iron transport protein B AC611_10045 PF07670 Nucleoside recognition AC611_10045 PF07664 Ferrous iron transport protein B C terminus AC611_10060 PF00155 Aminotransferase class I and II AC611_10065 PF03475 3-alpha domain AC611_10065 PF03473 MOSC domain AC611_10070 PF01113 Dihydrodipicolinate reductase, N-terminus AC611_10070 PF05173 Dihydrodipicolinate reductase, C-terminus AC611_10075 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AC611_10075 PF00117 Glutamine amidotransferase class-I AC611_10085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC611_10085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AC611_10085 PF02142 MGS-like domain AC611_10090 PF03449 Transcription elongation factor, N-terminal AC611_10090 PF01272 Transcription elongation factor, GreA/GreB, C-term AC611_10100 PF01368 DHH family AC611_10100 PF17768 RecJ OB domain AC611_10100 PF02272 DHHA1 domain AC611_10115 PF00472 RF-1 domain AC611_10115 PF03462 PCRF domain AC611_10120 PF01336 OB-fold nucleic acid binding domain AC611_10120 PF00152 tRNA synthetases class II (D, K and N) AC611_10125 PF00072 Response regulator receiver domain AC611_10130 PF00072 Response regulator receiver domain AC611_10130 PF00512 His Kinase A (phospho-acceptor) domain AC611_10130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10130 PF01627 Hpt domain AC611_10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10135 PF00512 His Kinase A (phospho-acceptor) domain AC611_10135 PF01627 Hpt domain AC611_10135 PF00072 Response regulator receiver domain AC611_10140 PF00378 Enoyl-CoA hydratase/isomerase AC611_10145 PF00501 AMP-binding enzyme AC611_10145 PF13193 AMP-binding enzyme C-terminal domain AC611_10160 PF00330 Aconitase family (aconitate hydratase) AC611_10160 PF00694 Aconitase C-terminal domain AC611_10175 PF00330 Aconitase family (aconitate hydratase) AC611_10175 PF11791 Aconitate B N-terminal domain AC611_10175 PF06434 Aconitate hydratase 2 N-terminus AC611_10180 PF00561 alpha/beta hydrolase fold AC611_10185 PF00563 EAL domain AC611_10185 PF03707 Bacterial signalling protein N terminal repeat AC611_10185 PF00990 Diguanylate cyclase, GGDEF domain AC611_10190 PF01339 CheB methylesterase AC611_10190 PF00072 Response regulator receiver domain AC611_10195 PF03975 CheD chemotactic sensory transduction AC611_10200 PF03705 CheR methyltransferase, all-alpha domain AC611_10200 PF01739 CheR methyltransferase, SAM binding domain AC611_10205 PF02203 Tar ligand binding domain homologue AC611_10205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10205 PF00672 HAMP domain AC611_10215 PF01584 CheW-like domain AC611_10220 PF07317 Flagellar regulator YcgR AC611_10220 PF07238 PilZ domain AC611_10225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10225 PF02203 Tar ligand binding domain homologue AC611_10225 PF00672 HAMP domain AC611_10230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10230 PF00672 HAMP domain AC611_10230 PF02203 Tar ligand binding domain homologue AC611_10235 PF00672 HAMP domain AC611_10235 PF02203 Tar ligand binding domain homologue AC611_10235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10240 PF00672 HAMP domain AC611_10240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10240 PF02203 Tar ligand binding domain homologue AC611_10245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10245 PF00672 HAMP domain AC611_10245 PF02203 Tar ligand binding domain homologue AC611_10255 PF00672 HAMP domain AC611_10255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10255 PF02203 Tar ligand binding domain homologue AC611_10260 PF02203 Tar ligand binding domain homologue AC611_10260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10260 PF00672 HAMP domain AC611_10265 PF00672 HAMP domain AC611_10265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10270 PF02203 Tar ligand binding domain homologue AC611_10270 PF00672 HAMP domain AC611_10280 PF00672 HAMP domain AC611_10280 PF02203 Tar ligand binding domain homologue AC611_10280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10285 PF02203 Tar ligand binding domain homologue AC611_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10285 PF00672 HAMP domain AC611_10295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10295 PF00672 HAMP domain AC611_10295 PF02203 Tar ligand binding domain homologue AC611_10300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10300 PF00672 HAMP domain AC611_10300 PF02203 Tar ligand binding domain homologue AC611_10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10305 PF02895 Signal transducing histidine kinase, homodimeric domain AC611_10305 PF01584 CheW-like domain AC611_10305 PF01627 Hpt domain AC611_10305 PF09078 CheY binding AC611_10310 PF00072 Response regulator receiver domain AC611_10320 PF01584 CheW-like domain AC611_10325 PF13614 AAA domain AC611_10330 PF00691 OmpA family AC611_10330 PF13677 Membrane MotB of proton-channel complex MotA/MotB AC611_10335 PF01618 MotA/TolQ/ExbB proton channel family AC611_10375 PF07194 P2 response regulator binding domain AC611_10375 PF02895 Signal transducing histidine kinase, homodimeric domain AC611_10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10375 PF01627 Hpt domain AC611_10375 PF01584 CheW-like domain AC611_10380 PF04344 Chemotaxis phosphatase, CheZ AC611_10385 PF00072 Response regulator receiver domain AC611_10390 PF04539 Sigma-70 region 3 AC611_10390 PF04545 Sigma-70, region 4 AC611_10390 PF04542 Sigma-70 region 2 AC611_10395 PF10609 NUBPL iron-transfer P-loop NTPase AC611_10400 PF00448 SRP54-type protein, GTPase domain AC611_10405 PF00771 FHIPEP family AC611_10410 PF01312 FlhB HrpN YscU SpaS Family AC611_10415 PF03707 Bacterial signalling protein N terminal repeat AC611_10415 PF00990 Diguanylate cyclase, GGDEF domain AC611_10415 PF00563 EAL domain AC611_10425 PF01609 Transposase DDE domain AC611_10425 PF05598 Transposase domain (DUF772) AC611_10435 PF01311 Bacterial export proteins, family 1 AC611_10440 PF01313 Bacterial export proteins, family 3 AC611_10445 PF01609 Transposase DDE domain AC611_10445 PF05598 Transposase domain (DUF772) AC611_10450 PF00813 FliP family AC611_10455 PF04347 Flagellar biosynthesis protein, FliO AC611_10460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AC611_10465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AC611_10465 PF02154 Flagellar motor switch protein FliM AC611_10485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_10485 PF18269 T3SS EscN ATPase C-terminal domain AC611_10495 PF14841 FliG middle domain AC611_10495 PF14842 FliG N-terminal domain AC611_10495 PF01706 FliG C-terminal domain AC611_10500 PF01514 Secretory protein of YscJ/FliF family AC611_10500 PF08345 Flagellar M-ring protein C-terminal AC611_10505 PF02049 Flagellar hook-basal body complex protein FliE AC611_10510 PF00534 Glycosyl transferases group 1 AC611_10510 PF00535 Glycosyl transferase family 2 AC611_10530 PF02348 Cytidylyltransferase AC611_10545 PF00872 Transposase, Mutator family AC611_10580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AC611_10580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AC611_10590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AC611_10595 PF00158 Sigma-54 interaction domain AC611_10595 PF00072 Response regulator receiver domain AC611_10595 PF02954 Bacterial regulatory protein, Fis family AC611_10600 PF01339 CheB methylesterase AC611_10600 PF00072 Response regulator receiver domain AC611_10605 PF00309 Sigma-54 factor, Activator interacting domain (AID) AC611_10605 PF04552 Sigma-54, DNA binding domain AC611_10605 PF04963 Sigma-54 factor, core binding domain AC611_10610 PF00196 Bacterial regulatory proteins, luxR family AC611_10610 PF00072 Response regulator receiver domain AC611_10625 PF02561 Flagellar protein FliS AC611_10630 PF02465 Flagellar hook-associated protein 2 N-terminus AC611_10630 PF07195 Flagellar hook-associated protein 2 C-terminus AC611_10630 PF07196 Flagellin hook IN motif AC611_10635 PF00669 Bacterial flagellin N-terminal helical region AC611_10635 PF00700 Bacterial flagellin C-terminal helical region AC611_10640 PF05598 Transposase domain (DUF772) AC611_10640 PF01609 Transposase DDE domain AC611_10645 PF00669 Bacterial flagellin N-terminal helical region AC611_10645 PF00700 Bacterial flagellin C-terminal helical region AC611_10650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC611_10650 PF07196 Flagellin hook IN motif AC611_10655 PF10135 Rod binding protein AC611_10655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AC611_10660 PF02119 Flagellar P-ring protein AC611_10665 PF02107 Flagellar L-ring protein AC611_10670 PF00460 Flagella basal body rod protein AC611_10670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC611_10685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC611_10685 PF00460 Flagella basal body rod protein AC611_10690 PF07559 Flagellar basal body protein FlaE AC611_10690 PF00460 Flagella basal body rod protein AC611_10690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC611_10695 PF03963 Flagellar hook capping protein - N-terminal region AC611_10700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AC611_10700 PF00460 Flagella basal body rod protein AC611_10710 PF01584 CheW-like domain AC611_10710 PF00072 Response regulator receiver domain AC611_10735 PF13426 PAS domain AC611_10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10735 PF00512 His Kinase A (phospho-acceptor) domain AC611_10735 PF00989 PAS fold AC611_10735 PF13188 PAS domain AC611_10740 PF00563 EAL domain AC611_10740 PF00990 Diguanylate cyclase, GGDEF domain AC611_10740 PF03707 Bacterial signalling protein N terminal repeat AC611_10745 PF07730 Histidine kinase AC611_10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_10750 PF00990 Diguanylate cyclase, GGDEF domain AC611_10750 PF03707 Bacterial signalling protein N terminal repeat AC611_10750 PF00563 EAL domain AC611_10760 PF12729 Four helix bundle sensory module for signal transduction AC611_10760 PF00672 HAMP domain AC611_10760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_10765 PF04356 Protein of unknown function (DUF489) AC611_10775 PF00293 NUDIX domain AC611_10780 PF02617 ATP-dependent Clp protease adaptor protein ClpS AC611_10785 PF02861 Clp amino terminal domain, pathogenicity island component AC611_10785 PF07724 AAA domain (Cdc48 subfamily) AC611_10785 PF17871 AAA lid domain AC611_10785 PF10431 C-terminal, D2-small domain, of ClpB protein AC611_10785 PF00004 ATPase family associated with various cellular activities (AAA) AC611_10790 PF01176 Translation initiation factor 1A / IF-1 AC611_10795 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AC611_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_10810 PF09397 Ftsk gamma domain AC611_10810 PF17854 FtsK alpha domain AC611_10810 PF01580 FtsK/SpoIIIE family AC611_10810 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AC611_10820 PF03548 Outer membrane lipoprotein carrier protein LolA AC611_10830 PF00004 ATPase family associated with various cellular activities (AAA) AC611_10830 PF12002 MgsA AAA+ ATPase C terminal AC611_10830 PF16193 AAA C-terminal domain AC611_10835 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AC611_10840 PF00108 Thiolase, N-terminal domain AC611_10840 PF02803 Thiolase, C-terminal domain AC611_10845 PF00378 Enoyl-CoA hydratase/isomerase AC611_10845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AC611_10845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AC611_10855 PF00334 Nucleoside diphosphate kinase AC611_10860 PF04055 Radical SAM superfamily AC611_10870 PF13464 Domain of unknown function (DUF4115) AC611_10880 PF01011 PQQ enzyme repeat AC611_10880 PF13360 PQQ-like domain AC611_10885 PF01926 50S ribosome-binding GTPase AC611_10885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AC611_10890 PF03453 MoeA N-terminal region (domain I and II) AC611_10890 PF00994 Probable molybdopterin binding domain AC611_10890 PF03454 MoeA C-terminal region (domain IV) AC611_10895 PF00899 ThiF family AC611_10920 PF00107 Zinc-binding dehydrogenase AC611_10920 PF08240 Alcohol dehydrogenase GroES-like domain AC611_10920 PF13823 Alcohol dehydrogenase GroES-associated AC611_10930 PF03372 Endonuclease/Exonuclease/phosphatase family AC611_10940 PF00994 Probable molybdopterin binding domain AC611_10940 PF03454 MoeA C-terminal region (domain IV) AC611_10940 PF03453 MoeA N-terminal region (domain I and II) AC611_10945 PF12804 MobA-like NTP transferase domain AC611_10970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC611_10970 PF14824 Sirohaem biosynthesis protein central AC611_10970 PF10414 Sirohaem synthase dimerisation region AC611_10975 PF00072 Response regulator receiver domain AC611_10975 PF03861 ANTAR domain AC611_10985 PF07690 Major Facilitator Superfamily AC611_10990 PF18267 Rubredoxin NAD+ reductase C-terminal domain AC611_10990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_10990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AC611_10990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AC611_10990 PF04324 BFD-like [2Fe-2S] binding domain AC611_11000 PF04324 BFD-like [2Fe-2S] binding domain AC611_11000 PF01568 Molydopterin dinucleotide binding domain AC611_11000 PF00384 Molybdopterin oxidoreductase AC611_11000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AC611_11005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC611_11015 PF05974 Domain of unknown function (DUF892) AC611_11035 PF00563 EAL domain AC611_11035 PF08448 PAS fold AC611_11035 PF08447 PAS fold AC611_11035 PF00990 Diguanylate cyclase, GGDEF domain AC611_11040 PF12951 Passenger-associated-transport-repeat AC611_11040 PF12951 Passenger-associated-transport-repeat AC611_11045 PF00196 Bacterial regulatory proteins, luxR family AC611_11045 PF00072 Response regulator receiver domain AC611_11050 PF13426 PAS domain AC611_11050 PF00072 Response regulator receiver domain AC611_11050 PF08448 PAS fold AC611_11050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_11050 PF00512 His Kinase A (phospho-acceptor) domain AC611_11060 PF00873 AcrB/AcrD/AcrF family AC611_11065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_11070 PF00082 Subtilase family AC611_11070 PF03797 Autotransporter beta-domain AC611_11085 PF07995 Glucose / Sorbosone dehydrogenase AC611_11095 PF00872 Transposase, Mutator family AC611_11105 PF01609 Transposase DDE domain AC611_11105 PF05598 Transposase domain (DUF772) AC611_11110 PF00872 Transposase, Mutator family AC611_11170 PF07516 SecA Wing and Scaffold domain AC611_11170 PF01043 SecA preprotein cross-linking domain AC611_11170 PF07517 SecA DEAD-like domain AC611_11170 PF02810 SEC-C motif AC611_11175 PF00872 Transposase, Mutator family AC611_11185 PF08241 Methyltransferase domain AC611_11185 PF12697 Alpha/beta hydrolase family AC611_11200 PF02585 GlcNAc-PI de-N-acetylase AC611_11200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AC611_11220 PF00872 Transposase, Mutator family AC611_11240 PF07057 DNA helicase TraI AC611_11240 PF08751 TrwC relaxase AC611_11240 PF18340 DNA relaxase TraI 2B/2B-like domain AC611_11240 PF18272 single-stranded DNA binding TraI N-terminal subdomain AC611_11295 PF00872 Transposase, Mutator family AC611_11305 PF13614 AAA domain AC611_11350 PF02810 SEC-C motif AC611_11350 PF03695 Uncharacterised protein family (UPF0149) AC611_11365 PF02796 Helix-turn-helix domain of resolvase AC611_11365 PF00239 Resolvase, N terminal domain AC611_11390 PF00872 Transposase, Mutator family AC611_11420 PF00440 Bacterial regulatory proteins, tetR family AC611_11430 PF01106 NifU-like domain AC611_11435 PF01329 Pterin 4 alpha carbinolamine dehydratase AC611_11445 PF02535 ZIP Zinc transporter AC611_11450 PF11737 Protein of unknown function (DUF3300) AC611_11455 PF01479 S4 domain AC611_11455 PF00849 RNA pseudouridylate synthase AC611_11460 PF12111 Polyribonucleotide phosphorylase C terminal AC611_11460 PF10150 Ribonuclease E/G family AC611_11460 PF00575 S1 RNA binding domain AC611_11465 PF01609 Transposase DDE domain AC611_11465 PF05598 Transposase domain (DUF772) AC611_11470 PF00196 Bacterial regulatory proteins, luxR family AC611_11470 PF00072 Response regulator receiver domain AC611_11485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC611_11495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC611_11495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC611_11495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC611_11520 PF01066 CDP-alcohol phosphatidyltransferase AC611_11525 PF02151 UvrB/uvrC motif AC611_11525 PF01541 GIY-YIG catalytic domain AC611_11525 PF08459 UvrC Helix-hairpin-helix N-terminal AC611_11535 PF01451 Low molecular weight phosphotyrosine protein phosphatase AC611_11540 PF02348 Cytidylyltransferase AC611_11545 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AC611_11550 PF00664 ABC transporter transmembrane region AC611_11550 PF00005 ABC transporter AC611_11560 PF01618 MotA/TolQ/ExbB proton channel family AC611_11565 PF00753 Metallo-beta-lactamase superfamily AC611_11565 PF03772 Competence protein AC611_11575 PF00005 ABC transporter AC611_11580 PF12704 MacB-like periplasmic core domain AC611_11580 PF02687 FtsX-like permease family AC611_11590 PF03937 Flavinator of succinate dehydrogenase AC611_11595 PF13085 2Fe-2S iron-sulfur cluster binding domain AC611_11605 PF02910 Fumarate reductase flavoprotein C-term AC611_11605 PF00890 FAD binding domain AC611_11610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC611_11615 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AC611_11620 PF01571 Aminomethyltransferase folate-binding domain AC611_11625 PF17912 MalK OB fold domain AC611_11625 PF00005 ABC transporter AC611_11630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC611_11630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC611_11635 PF02685 Glucokinase AC611_11640 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AC611_11645 PF00920 Dehydratase family AC611_11650 PF01081 KDPG and KHG aldolase AC611_11655 PF00873 AcrB/AcrD/AcrF family AC611_11660 PF00873 AcrB/AcrD/AcrF family AC611_11665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_11675 PF00034 Cytochrome c AC611_11720 PF00512 His Kinase A (phospho-acceptor) domain AC611_11720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_11720 PF09308 LuxQ, periplasmic AC611_11720 PF00072 Response regulator receiver domain AC611_11725 PF17674 HHH domain AC611_11725 PF00575 S1 RNA binding domain AC611_11725 PF16921 Tex protein YqgF-like domain AC611_11725 PF09371 Tex-like protein N-terminal domain AC611_11735 PF00355 Rieske [2Fe-2S] domain AC611_11735 PF01266 FAD dependent oxidoreductase AC611_11750 PF00561 alpha/beta hydrolase fold AC611_11760 PF01066 CDP-alcohol phosphatidyltransferase AC611_11780 PF03618 Kinase/pyrophosphorylase AC611_11785 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AC611_11785 PF02896 PEP-utilising enzyme, TIM barrel domain AC611_11785 PF00391 PEP-utilising enzyme, mobile domain AC611_11795 PF00929 Exonuclease AC611_11800 PF14437 MafB19-like deaminase AC611_11805 PF02742 Iron dependent repressor, metal binding and dimerisation domain AC611_11805 PF01325 Iron dependent repressor, N-terminal DNA binding domain AC611_11810 PF01566 Natural resistance-associated macrophage protein AC611_11815 PF00561 alpha/beta hydrolase fold AC611_11830 PF05977 Transmembrane secretion effector AC611_11835 PF07969 Amidohydrolase family AC611_11845 PF00857 Isochorismatase family AC611_11865 PF00072 Response regulator receiver domain AC611_11865 PF00196 Bacterial regulatory proteins, luxR family AC611_11890 PF03377 TAL effector repeat AC611_11900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_11900 PF03466 LysR substrate binding domain AC611_11905 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC611_11905 PF00361 Proton-conducting membrane transporter AC611_11905 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AC611_11910 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AC611_11920 PF00107 Zinc-binding dehydrogenase AC611_11920 PF08240 Alcohol dehydrogenase GroES-like domain AC611_11925 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC611_11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_11930 PF03466 LysR substrate binding domain AC611_11935 PF13276 HTH-like domain AC611_11935 PF13333 Integrase core domain AC611_11935 PF00665 Integrase core domain AC611_11940 PF01527 Transposase AC611_11985 PF02540 NAD synthase AC611_11985 PF00117 Glutamine amidotransferase class-I AC611_11985 PF00958 GMP synthase C terminal domain AC611_11990 PF00478 IMP dehydrogenase / GMP reductase domain AC611_11990 PF00571 CBS domain AC611_11995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AC611_11995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AC611_12005 PF00999 Sodium/hydrogen exchanger family AC611_12005 PF02254 TrkA-N domain AC611_12010 PF00483 Nucleotidyl transferase AC611_12015 PF02719 Polysaccharide biosynthesis protein AC611_12020 PF00953 Glycosyl transferase family 4 AC611_12025 PF18073 Rubredoxin metal binding domain AC611_12035 PF00216 Bacterial DNA-binding protein AC611_12040 PF00575 S1 RNA binding domain AC611_12045 PF02224 Cytidylate kinase AC611_12050 PF00444 Ribosomal protein L36 AC611_12060 PF04371 Porphyromonas-type peptidyl-arginine deiminase AC611_12065 PF00795 Carbon-nitrogen hydrolase AC611_12090 PF00528 Binding-protein-dependent transport system inner membrane component AC611_12095 PF00528 Binding-protein-dependent transport system inner membrane component AC611_12115 PF00356 Bacterial regulatory proteins, lacI family AC611_12130 PF03795 YCII-related domain AC611_12135 PF02616 Segregation and condensation protein ScpA AC611_12140 PF04079 Segregation and condensation complex subunit ScpB AC611_12145 PF00849 RNA pseudouridylate synthase AC611_12145 PF01479 S4 domain AC611_12160 PF00795 Carbon-nitrogen hydrolase AC611_12165 PF00155 Aminotransferase class I and II AC611_12170 PF00005 ABC transporter AC611_12175 PF03379 CcmB protein AC611_12180 PF01578 Cytochrome C assembly protein AC611_12190 PF03100 CcmE AC611_12195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AC611_12195 PF01578 Cytochrome C assembly protein AC611_12200 PF08534 Redoxin AC611_12205 PF03918 Cytochrome C biogenesis protein AC611_12215 PF00561 alpha/beta hydrolase fold AC611_12225 PF00005 ABC transporter AC611_12225 PF00664 ABC transporter transmembrane region AC611_12230 PF00664 ABC transporter transmembrane region AC611_12230 PF00005 ABC transporter AC611_12235 PF01654 Cytochrome bd terminal oxidase subunit I AC611_12240 PF02322 Cytochrome bd terminal oxidase subunit II AC611_12260 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AC611_12260 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AC611_12270 PF00171 Aldehyde dehydrogenase family AC611_12275 PF00696 Amino acid kinase family AC611_12275 PF01472 PUA domain AC611_12285 PF00206 Lyase AC611_12290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC611_12300 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AC611_12300 PF00696 Amino acid kinase family AC611_12315 PF00764 Arginosuccinate synthase AC611_12320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC611_12320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC611_12330 PF09190 DALR domain AC611_12330 PF01406 tRNA synthetases class I (C) catalytic domain AC611_12335 PF02657 Fe-S metabolism associated domain AC611_12345 PF01258 Prokaryotic dksA/traR C4-type zinc finger AC611_12355 PF01809 Putative membrane protein insertion efficiency factor AC611_12360 PF01979 Amidohydrolase family AC611_12365 PF08460 Bacterial SH3 domain AC611_12365 PF01551 Peptidase family M23 AC611_12380 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AC611_12385 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AC611_12395 PF00753 Metallo-beta-lactamase superfamily AC611_12410 PF01609 Transposase DDE domain AC611_12410 PF05598 Transposase domain (DUF772) AC611_12415 PF00295 Glycosyl hydrolases family 28 AC611_12435 PF13419 Haloacid dehalogenase-like hydrolase AC611_12445 PF01979 Amidohydrolase family AC611_12455 PF01132 Elongation factor P (EF-P) OB domain AC611_12455 PF09285 Elongation factor P, C-terminal AC611_12455 PF08207 Elongation factor P (EF-P) KOW-like domain AC611_12460 PF04055 Radical SAM superfamily AC611_12465 PF03707 Bacterial signalling protein N terminal repeat AC611_12465 PF13188 PAS domain AC611_12465 PF00990 Diguanylate cyclase, GGDEF domain AC611_12465 PF00563 EAL domain AC611_12475 PF00588 SpoU rRNA Methylase family AC611_12480 PF00459 Inositol monophosphatase family AC611_12485 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC611_12485 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC611_12490 PF00545 ribonuclease AC611_12505 PF00271 Helicase conserved C-terminal domain AC611_12505 PF03880 DbpA RNA binding domain AC611_12505 PF00270 DEAD/DEAH box helicase AC611_12510 PF00156 Phosphoribosyl transferase domain AC611_12515 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AC611_12520 PF00135 Carboxylesterase family AC611_12535 PF02798 Glutathione S-transferase, N-terminal domain AC611_12535 PF14497 Glutathione S-transferase, C-terminal domain AC611_12540 PF00313 'Cold-shock' DNA-binding domain AC611_12545 PF07152 YaeQ protein AC611_12555 PF00563 EAL domain AC611_12555 PF00990 Diguanylate cyclase, GGDEF domain AC611_12555 PF00072 Response regulator receiver domain AC611_12560 PF01435 Peptidase family M48 AC611_12565 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC611_12570 PF00106 short chain dehydrogenase AC611_12575 PF07879 PHB/PHA accumulation regulator DNA-binding domain AC611_12575 PF05233 PHB accumulation regulatory domain AC611_12590 PF08676 MutL C terminal dimerisation domain AC611_12590 PF01119 DNA mismatch repair protein, C-terminal domain AC611_12595 PF11741 AMIN domain AC611_12595 PF01520 N-acetylmuramoyl-L-alanine amidase AC611_12600 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AC611_12605 PF01256 Carbohydrate kinase AC611_12605 PF03853 YjeF-related protein N-terminus AC611_12610 PF08331 Domain of unknown function (DUF1730) AC611_12615 PF13742 OB-fold nucleic acid binding domain AC611_12615 PF02601 Exonuclease VII, large subunit AC611_12625 PF03781 Sulfatase-modifying factor enzyme 1 AC611_12630 PF00570 HRDC domain AC611_12630 PF01612 3'-5' exonuclease AC611_12635 PF13298 DNA polymerase Ligase (LigD) AC611_12635 PF01068 ATP dependent DNA ligase domain AC611_12635 PF04679 ATP dependent DNA ligase C terminal region AC611_12665 PF01584 CheW-like domain AC611_12670 PF02743 Cache domain AC611_12670 PF00672 HAMP domain AC611_12670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_12675 PF02245 Methylpurine-DNA glycosylase (MPG) AC611_12680 PF08494 DEAD/H associated AC611_12680 PF00270 DEAD/DEAH box helicase AC611_12680 PF00271 Helicase conserved C-terminal domain AC611_12695 PF04386 Stringent starvation protein B AC611_12700 PF00043 Glutathione S-transferase, C-terminal domain AC611_12700 PF02798 Glutathione S-transferase, N-terminal domain AC611_12705 PF02167 Cytochrome C1 family AC611_12710 PF00032 Cytochrome b(C-terminal)/b6/petD AC611_12710 PF00033 Cytochrome b/b6/petB AC611_12715 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AC611_12715 PF00355 Rieske [2Fe-2S] domain AC611_12725 PF01464 Transglycosylase SLT domain AC611_12740 PF01938 TRAM domain AC611_12740 PF04055 Radical SAM superfamily AC611_12740 PF00919 Uncharacterized protein family UPF0004 AC611_12745 PF02562 PhoH-like protein AC611_12755 PF02130 Uncharacterized protein family UPF0054 AC611_12765 PF00571 CBS domain AC611_12765 PF03471 Transporter associated domain AC611_12780 PF00171 Aldehyde dehydrogenase family AC611_12790 PF00528 Binding-protein-dependent transport system inner membrane component AC611_12795 PF00528 Binding-protein-dependent transport system inner membrane component AC611_12800 PF00005 ABC transporter AC611_12800 PF08402 TOBE domain AC611_12805 PF02321 Outer membrane efflux protein AC611_12810 PF07690 Major Facilitator Superfamily AC611_12815 PF13533 Biotin-lipoyl like AC611_12820 PF13416 Bacterial extracellular solute-binding protein AC611_12825 PF00202 Aminotransferase class-III AC611_12830 PF00120 Glutamine synthetase, catalytic domain AC611_12835 PF07722 Peptidase C26 AC611_12840 PF00120 Glutamine synthetase, catalytic domain AC611_12845 PF01266 FAD dependent oxidoreductase AC611_12850 PF00990 Diguanylate cyclase, GGDEF domain AC611_12850 PF00072 Response regulator receiver domain AC611_12855 PF01814 Hemerythrin HHE cation binding domain AC611_12860 PF07690 Major Facilitator Superfamily AC611_12860 PF00083 Sugar (and other) transporter AC611_12870 PF00384 Molybdopterin oxidoreductase AC611_12875 PF02634 FdhD/NarQ family AC611_12880 PF07690 Major Facilitator Superfamily AC611_12885 PF00202 Aminotransferase class-III AC611_12895 PF04286 Protein of unknown function (DUF445) AC611_12900 PF00072 Response regulator receiver domain AC611_12900 PF00512 His Kinase A (phospho-acceptor) domain AC611_12900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_12900 PF00672 HAMP domain AC611_12900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AC611_12900 PF01627 Hpt domain AC611_12905 PF00072 Response regulator receiver domain AC611_12910 PF07690 Major Facilitator Superfamily AC611_12915 PF00672 HAMP domain AC611_12915 PF02203 Tar ligand binding domain homologue AC611_12915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_12945 PF05088 Bacterial NAD-glutamate dehydrogenase AC611_12955 PF00529 HlyD membrane-fusion protein of T1SS AC611_12955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_12960 PF00873 AcrB/AcrD/AcrF family AC611_12965 PF00356 Bacterial regulatory proteins, lacI family AC611_12970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC611_12970 PF02896 PEP-utilising enzyme, TIM barrel domain AC611_12970 PF00391 PEP-utilising enzyme, mobile domain AC611_12970 PF00381 PTS HPr component phosphorylation site AC611_12970 PF05524 PEP-utilising enzyme, N-terminal AC611_12975 PF00294 pfkB family carbohydrate kinase AC611_12980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AC611_12995 PF00872 Transposase, Mutator family AC611_13000 PF02355 Protein export membrane protein AC611_13000 PF07549 SecD/SecF GG Motif AC611_13005 PF13721 SecD export protein N-terminal TM region AC611_13005 PF02355 Protein export membrane protein AC611_13005 PF07549 SecD/SecF GG Motif AC611_13010 PF02699 Preprotein translocase subunit AC611_13015 PF01702 Queuine tRNA-ribosyltransferase AC611_13020 PF02547 Queuosine biosynthesis protein AC611_13070 PF02927 Cellulase N-terminal ig-like domain AC611_13070 PF00759 Glycosyl hydrolase family 9 AC611_13085 PF00037 4Fe-4S binding domain AC611_13100 PF01467 Cytidylyltransferase-like AC611_13110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_13110 PF00183 Hsp90 protein AC611_13155 PF00872 Transposase, Mutator family AC611_13195 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AC611_13210 PF01464 Transglycosylase SLT domain AC611_13215 PF00437 Type II/IV secretion system protein AC611_13220 PF03743 Bacterial conjugation TrbI-like protein AC611_13240 PF02534 Type IV secretory system Conjugative DNA transfer AC611_13255 PF17757 UvrB interaction domain AC611_13255 PF04851 Type III restriction enzyme, res subunit AC611_13255 PF02151 UvrB/uvrC motif AC611_13255 PF00271 Helicase conserved C-terminal domain AC611_13255 PF12344 Ultra-violet resistance protein B AC611_13325 PF13683 Integrase core domain AC611_13325 PF13276 HTH-like domain AC611_13330 PF01527 Transposase AC611_13425 PF00182 Chitinase class I AC611_13475 PF01555 DNA methylase AC611_13495 PF01527 Transposase AC611_13500 PF13683 Integrase core domain AC611_13500 PF13276 HTH-like domain AC611_13515 PF00114 Pilin (bacterial filament) AC611_13515 PF07963 Prokaryotic N-terminal methylation motif AC611_13520 PF05567 Neisseria PilC beta-propeller domain AC611_13535 PF00872 Transposase, Mutator family AC611_13540 PF06580 Histidine kinase AC611_13540 PF07694 5TMR of 5TMR-LYT AC611_13545 PF03641 Possible lysine decarboxylase AC611_13545 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AC611_13545 PF11892 Domain of unknown function (DUF3412) AC611_13550 PF00593 TonB dependent receptor AC611_13555 PF01914 MarC family integral membrane protein AC611_13565 PF00462 Glutaredoxin AC611_13570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AC611_13570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AC611_13575 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AC611_13575 PF02222 ATP-grasp domain AC611_13580 PF00731 AIR carboxylase AC611_13590 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AC611_13590 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AC611_13600 PF03725 3' exoribonuclease family, domain 2 AC611_13600 PF00575 S1 RNA binding domain AC611_13600 PF01138 3' exoribonuclease family, domain 1 AC611_13600 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AC611_13600 PF00013 KH domain AC611_13605 PF00312 Ribosomal protein S15 AC611_13610 PF16198 tRNA pseudouridylate synthase B C-terminal domain AC611_13610 PF09157 Pseudouridine synthase II TruB, C-terminal AC611_13610 PF01509 TruB family pseudouridylate synthase (N terminal domain) AC611_13615 PF02033 Ribosome-binding factor A AC611_13620 PF11987 Translation-initiation factor 2 AC611_13620 PF00009 Elongation factor Tu GTP binding domain AC611_13620 PF08364 Bacterial translation initiation factor IF-2 associated region AC611_13620 PF04760 Translation initiation factor IF-2, N-terminal region AC611_13625 PF00575 S1 RNA binding domain AC611_13625 PF08529 NusA N-terminal domain AC611_13625 PF13184 NusA-like KH domain AC611_13630 PF02576 RimP N-terminal domain AC611_13630 PF17384 RimP C-terminal SH3 domain AC611_13640 PF00361 Proton-conducting membrane transporter AC611_13645 PF00361 Proton-conducting membrane transporter AC611_13645 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AC611_13650 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AC611_13650 PF00361 Proton-conducting membrane transporter AC611_13655 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AC611_13660 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AC611_13665 PF12838 4Fe-4S dicluster domain AC611_13670 PF00146 NADH dehydrogenase AC611_13675 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AC611_13675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AC611_13675 PF00384 Molybdopterin oxidoreductase AC611_13680 PF10531 SLBB domain AC611_13680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AC611_13680 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AC611_13690 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AC611_13695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AC611_13700 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AC611_13705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AC611_13720 PF00121 Triosephosphate isomerase AC611_13725 PF00106 short chain dehydrogenase AC611_13740 PF00563 EAL domain AC611_13740 PF00990 Diguanylate cyclase, GGDEF domain AC611_13740 PF03707 Bacterial signalling protein N terminal repeat AC611_13760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC611_13760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC611_13760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC611_13760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC611_13765 PF01039 Carboxyl transferase domain AC611_13765 PF17848 Acetyl-coA carboxylase zinc finger domain AC611_13770 PF00290 Tryptophan synthase alpha chain AC611_13780 PF00291 Pyridoxal-phosphate dependent enzyme AC611_13785 PF03466 LysR substrate binding domain AC611_13785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_13790 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AC611_13795 PF01416 tRNA pseudouridine synthase AC611_13815 PF02774 Semialdehyde dehydrogenase, dimerisation domain AC611_13815 PF01118 Semialdehyde dehydrogenase, NAD binding domain AC611_13820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AC611_13820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AC611_13825 PF01264 Chorismate synthase AC611_13830 PF05175 Methyltransferase small domain AC611_13835 PF02630 SCO1/SenC AC611_13840 PF02666 Phosphatidylserine decarboxylase AC611_13850 PF05872 Bacterial protein of unknown function (DUF853) AC611_13870 PF01272 Transcription elongation factor, GreA/GreB, C-term AC611_13870 PF03449 Transcription elongation factor, N-terminal AC611_13875 PF04055 Radical SAM superfamily AC611_13875 PF18693 TRAM domain AC611_13875 PF00919 Uncharacterized protein family UPF0004 AC611_13880 PF01738 Dienelactone hydrolase family AC611_13900 PF00692 dUTPase AC611_13905 PF10609 NUBPL iron-transfer P-loop NTPase AC611_13910 PF07715 TonB-dependent Receptor Plug Domain AC611_13910 PF00593 TonB dependent receptor AC611_13940 PF05649 Peptidase family M13 AC611_13940 PF01431 Peptidase family M13 AC611_13965 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_13965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC611_13970 PF01266 FAD dependent oxidoreductase AC611_13975 PF04235 Protein of unknown function (DUF418) AC611_13980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AC611_13985 PF00877 NlpC/P60 family AC611_13990 PF00877 NlpC/P60 family AC611_14005 PF00375 Sodium:dicarboxylate symporter family AC611_14010 PF00245 Alkaline phosphatase AC611_14015 PF11734 TilS substrate C-terminal domain AC611_14015 PF09179 TilS substrate binding domain AC611_14015 PF01171 PP-loop family AC611_14020 PF02609 Exonuclease VII small subunit AC611_14025 PF00348 Polyprenyl synthetase AC611_14030 PF14521 Lysine-specific metallo-endopeptidase AC611_14040 PF01523 Putative modulator of DNA gyrase AC611_14045 PF04751 Protein of unknown function (DUF615) AC611_14050 PF01523 Putative modulator of DNA gyrase AC611_14060 PF13502 AsmA-like C-terminal region AC611_14060 PF13116 Protein of unknown function AC611_14065 PF00575 S1 RNA binding domain AC611_14065 PF10150 Ribonuclease E/G family AC611_14070 PF02545 Maf-like protein AC611_14075 PF04402 Protein of unknown function (DUF541) AC611_14090 PF02590 Predicted SPOUT methyltransferase AC611_14105 PF01467 Cytidylyltransferase-like AC611_14120 PF13603 Leucyl-tRNA synthetase, Domain 2 AC611_14120 PF00133 tRNA synthetases class I (I, L, M and V) AC611_14120 PF08264 Anticodon-binding domain of tRNA AC611_14130 PF00085 Thioredoxin AC611_14150 PF07043 Protein of unknown function (DUF1328) AC611_14155 PF04070 Domain of unknown function (DUF378) AC611_14160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AC611_14170 PF03466 LysR substrate binding domain AC611_14170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_14175 PF01022 Bacterial regulatory protein, arsR family AC611_14210 PF00664 ABC transporter transmembrane region AC611_14210 PF00005 ABC transporter AC611_14220 PF00873 AcrB/AcrD/AcrF family AC611_14235 PF02321 Outer membrane efflux protein AC611_14240 PF00072 Response regulator receiver domain AC611_14240 PF00486 Transcriptional regulatory protein, C terminal AC611_14245 PF00512 His Kinase A (phospho-acceptor) domain AC611_14245 PF00672 HAMP domain AC611_14245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_14250 PF00999 Sodium/hydrogen exchanger family AC611_14255 PF00144 Beta-lactamase AC611_14260 PF03737 Aldolase/RraA AC611_14275 PF00990 Diguanylate cyclase, GGDEF domain AC611_14275 PF00072 Response regulator receiver domain AC611_14280 PF00849 RNA pseudouridylate synthase AC611_14280 PF01479 S4 domain AC611_14285 PF00990 Diguanylate cyclase, GGDEF domain AC611_14285 PF08448 PAS fold AC611_14285 PF00563 EAL domain AC611_14290 PF03880 DbpA RNA binding domain AC611_14290 PF00270 DEAD/DEAH box helicase AC611_14290 PF00271 Helicase conserved C-terminal domain AC611_14295 PF04542 Sigma-70 region 2 AC611_14295 PF08281 Sigma-70, region 4 AC611_14335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AC611_14335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AC611_14345 PF00654 Voltage gated chloride channel AC611_14350 PF08240 Alcohol dehydrogenase GroES-like domain AC611_14350 PF00107 Zinc-binding dehydrogenase AC611_14365 PF07715 TonB-dependent Receptor Plug Domain AC611_14365 PF00593 TonB dependent receptor AC611_14390 PF00082 Subtilase family AC611_14390 PF01483 Proprotein convertase P-domain AC611_14400 PF01483 Proprotein convertase P-domain AC611_14400 PF00082 Subtilase family AC611_14410 PF00248 Aldo/keto reductase family AC611_14415 PF07690 Major Facilitator Superfamily AC611_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_14420 PF03466 LysR substrate binding domain AC611_14430 PF12833 Helix-turn-helix domain AC611_14430 PF06719 AraC-type transcriptional regulator N-terminus AC611_14440 PF00440 Bacterial regulatory proteins, tetR family AC611_14440 PF16859 Tetracyclin repressor-like, C-terminal domain AC611_14445 PF02321 Outer membrane efflux protein AC611_14450 PF00873 AcrB/AcrD/AcrF family AC611_14455 PF00529 HlyD membrane-fusion protein of T1SS AC611_14455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_14465 PF01475 Ferric uptake regulator family AC611_14470 PF00749 tRNA synthetases class I (E and Q), catalytic domain AC611_14495 PF06123 Inner membrane protein CreD AC611_14515 PF00486 Transcriptional regulatory protein, C terminal AC611_14515 PF00072 Response regulator receiver domain AC611_14520 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AC611_14540 PF02559 CarD-like/TRCF domain AC611_14540 PF00270 DEAD/DEAH box helicase AC611_14540 PF17757 UvrB interaction domain AC611_14540 PF03461 TRCF domain AC611_14540 PF00271 Helicase conserved C-terminal domain AC611_14550 PF01627 Hpt domain AC611_14550 PF09078 CheY binding AC611_14550 PF01584 CheW-like domain AC611_14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_14550 PF02895 Signal transducing histidine kinase, homodimeric domain AC611_14555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_14555 PF02203 Tar ligand binding domain homologue AC611_14555 PF00672 HAMP domain AC611_14560 PF01584 CheW-like domain AC611_14565 PF00563 EAL domain AC611_14565 PF00990 Diguanylate cyclase, GGDEF domain AC611_14565 PF13426 PAS domain AC611_14570 PF01739 CheR methyltransferase, SAM binding domain AC611_14570 PF03705 CheR methyltransferase, all-alpha domain AC611_14575 PF01339 CheB methylesterase AC611_14575 PF00072 Response regulator receiver domain AC611_14585 PF05649 Peptidase family M13 AC611_14585 PF01431 Peptidase family M13 AC611_14595 PF00300 Histidine phosphatase superfamily (branch 1) AC611_14600 PF04493 Endonuclease V AC611_14615 PF02678 Pirin AC611_14615 PF05726 Pirin C-terminal cupin domain AC611_14630 PF02678 Pirin AC611_14630 PF05726 Pirin C-terminal cupin domain AC611_14635 PF02554 Carbon starvation protein CstA AC611_14635 PF13722 5TM C-terminal transporter carbon starvation CstA AC611_14640 PF04328 Selenoprotein, putative AC611_14650 PF12796 Ankyrin repeats (3 copies) AC611_14685 PF02625 XdhC and CoxI family AC611_14685 PF13478 XdhC Rossmann domain AC611_14690 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AC611_14690 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AC611_14695 PF00941 FAD binding domain in molybdopterin dehydrogenase AC611_14695 PF03450 CO dehydrogenase flavoprotein C-terminal domain AC611_14700 PF00111 2Fe-2S iron-sulfur cluster binding domain AC611_14700 PF01799 [2Fe-2S] binding domain AC611_14700 PF10518 TAT (twin-arginine translocation) pathway signal sequence AC611_14705 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_14705 PF08659 KR domain AC611_14705 PF00550 Phosphopantetheine attachment site AC611_14705 PF14765 Polyketide synthase dehydratase AC611_14705 PF00107 Zinc-binding dehydrogenase AC611_14705 PF08240 Alcohol dehydrogenase GroES-like domain AC611_14705 PF00698 Acyl transferase domain AC611_14705 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_14705 PF16197 Ketoacyl-synthetase C-terminal extension AC611_14710 PF00360 Phytochrome region AC611_14710 PF00990 Diguanylate cyclase, GGDEF domain AC611_14710 PF01590 GAF domain AC611_14710 PF00563 EAL domain AC611_14715 PF00436 Single-strand binding protein family AC611_14720 PF00348 Polyprenyl synthetase AC611_14730 PF08245 Mur ligase middle domain AC611_14730 PF02875 Mur ligase family, glutamate ligase domain AC611_14745 PF01842 ACT domain AC611_14745 PF00696 Amino acid kinase family AC611_14750 PF02567 Phenazine biosynthesis-like protein AC611_14755 PF02567 Phenazine biosynthesis-like protein AC611_14765 PF02566 OsmC-like protein AC611_14770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AC611_14770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AC611_14775 PF03652 Holliday junction resolvase AC611_14780 PF02622 Uncharacterized ACR, COG1678 AC611_14785 PF13687 Domain of unknown function (DUF4153) AC611_14790 PF00958 GMP synthase C terminal domain AC611_14790 PF00117 Glutamine amidotransferase class-I AC611_14790 PF03352 Methyladenine glycosylase AC611_14790 PF13302 Acetyltransferase (GNAT) domain AC611_14790 PF13673 Acetyltransferase (GNAT) domain AC611_14805 PF00437 Type II/IV secretion system protein AC611_14810 PF00437 Type II/IV secretion system protein AC611_14815 PF01168 Alanine racemase, N-terminal domain AC611_14820 PF14748 Pyrroline-5-carboxylate reductase dimerisation AC611_14820 PF03807 NADP oxidoreductase coenzyme F420-dependent AC611_14830 PF01551 Peptidase family M23 AC611_14850 PF01965 DJ-1/PfpI family AC611_14860 PF02082 Transcriptional regulator AC611_14865 PF01458 Uncharacterized protein family (UPF0051) AC611_14870 PF00005 ABC transporter AC611_14875 PF01458 Uncharacterized protein family (UPF0051) AC611_14880 PF00266 Aminotransferase class-V AC611_14885 PF00583 Acetyltransferase (GNAT) family AC611_14890 PF00355 Rieske [2Fe-2S] domain AC611_14895 PF07715 TonB-dependent Receptor Plug Domain AC611_14895 PF00593 TonB dependent receptor AC611_14900 PF18331 PKHD-type hydroxylase C-terminal domain AC611_14900 PF13640 2OG-Fe(II) oxygenase superfamily AC611_14925 PF00872 Transposase, Mutator family AC611_14930 PF02424 ApbE family AC611_14935 PF00667 FAD binding domain AC611_14935 PF00175 Oxidoreductase NAD-binding domain AC611_14935 PF00258 Flavodoxin AC611_14940 PF05962 HutD AC611_14960 PF01636 Phosphotransferase enzyme family AC611_14965 PF00483 Nucleotidyl transferase AC611_14970 PF00308 Bacterial dnaA protein AC611_14975 PF01594 AI-2E family transporter AC611_14985 PF00586 AIR synthase related protein, N-terminal domain AC611_14985 PF02769 AIR synthase related protein, C-terminal domain AC611_15000 PF00551 Formyl transferase AC611_15020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AC611_15025 PF01722 BolA-like protein AC611_15030 PF00571 CBS domain AC611_15030 PF01380 SIS domain AC611_15045 PF03968 OstA-like protein AC611_15050 PF00005 ABC transporter AC611_15055 PF00309 Sigma-54 factor, Activator interacting domain (AID) AC611_15055 PF04963 Sigma-54 factor, core binding domain AC611_15055 PF04552 Sigma-54, DNA binding domain AC611_15060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AC611_15065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AC611_15070 PF02603 HPr Serine kinase N terminus AC611_15070 PF07475 HPr Serine kinase C-terminal domain AC611_15075 PF03668 P-loop ATPase protein family AC611_15085 PF00381 PTS HPr component phosphorylation site AC611_15100 PF03448 MgtE intracellular N domain AC611_15100 PF00571 CBS domain AC611_15100 PF01769 Divalent cation transporter AC611_15105 PF00756 Putative esterase AC611_15110 PF02322 Cytochrome bd terminal oxidase subunit II AC611_15145 PF03743 Bacterial conjugation TrbI-like protein AC611_15170 PF03377 TAL effector repeat AC611_15175 PF13406 Transglycosylase SLT domain AC611_15180 PF13700 Domain of unknown function (DUF4158) AC611_15180 PF01526 Tn3 transposase DDE domain AC611_15240 PF01654 Cytochrome bd terminal oxidase subunit I AC611_15250 PF00324 Amino acid permease AC611_15255 PF00544 Pectate lyase AC611_15260 PF01527 Transposase AC611_15265 PF13683 Integrase core domain AC611_15265 PF13276 HTH-like domain AC611_15280 PF00561 alpha/beta hydrolase fold AC611_15285 PF00196 Bacterial regulatory proteins, luxR family AC611_15290 PF00324 Amino acid permease AC611_15310 PF12706 Beta-lactamase superfamily domain AC611_15345 PF09278 MerR, DNA binding AC611_15345 PF00376 MerR family regulatory protein AC611_15350 PF07690 Major Facilitator Superfamily AC611_15355 PF03738 Glutathionylspermidine synthase preATP-grasp AC611_15380 PF04012 PspA/IM30 family AC611_15390 PF01243 Pyridoxamine 5'-phosphate oxidase AC611_15390 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AC611_15395 PF01202 Shikimate kinase AC611_15400 PF01761 3-dehydroquinate synthase AC611_15410 PF01208 Uroporphyrinogen decarboxylase (URO-D) AC611_15415 PF07690 Major Facilitator Superfamily AC611_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_15420 PF00512 His Kinase A (phospho-acceptor) domain AC611_15420 PF00072 Response regulator receiver domain AC611_15420 PF00672 HAMP domain AC611_15420 PF01627 Hpt domain AC611_15420 PF17149 Periplasmic sensor domain found in signal transduction proteins AC611_15425 PF01627 Hpt domain AC611_15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_15425 PF00512 His Kinase A (phospho-acceptor) domain AC611_15425 PF00072 Response regulator receiver domain AC611_15425 PF17149 Periplasmic sensor domain found in signal transduction proteins AC611_15425 PF00672 HAMP domain AC611_15430 PF00072 Response regulator receiver domain AC611_15430 PF01627 Hpt domain AC611_15430 PF00512 His Kinase A (phospho-acceptor) domain AC611_15430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_15430 PF00672 HAMP domain AC611_15430 PF17149 Periplasmic sensor domain found in signal transduction proteins AC611_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_15440 PF00512 His Kinase A (phospho-acceptor) domain AC611_15440 PF01627 Hpt domain AC611_15440 PF00072 Response regulator receiver domain AC611_15445 PF04264 YceI-like domain AC611_15465 PF03315 Serine dehydratase beta chain AC611_15465 PF03313 Serine dehydratase alpha chain AC611_15470 PF00704 Glycosyl hydrolases family 18 AC611_15470 PF00041 Fibronectin type III domain AC611_15470 PF00553 Cellulose binding domain AC611_15475 PF03447 Homoserine dehydrogenase, NAD binding domain AC611_15475 PF00696 Amino acid kinase family AC611_15475 PF00742 Homoserine dehydrogenase AC611_15480 PF01053 Cys/Met metabolism PLP-dependent enzyme AC611_15485 PF00561 alpha/beta hydrolase fold AC611_15490 PF08525 Opacity-associated protein A N-terminal motif AC611_15490 PF01476 LysM domain AC611_15490 PF01551 Peptidase family M23 AC611_15495 PF16658 Class II release factor RF3, C-terminal domain AC611_15495 PF00009 Elongation factor Tu GTP binding domain AC611_15500 PF03006 Haemolysin-III related AC611_15505 PF05170 AsmA family AC611_15510 PF00571 CBS domain AC611_15510 PF00478 IMP dehydrogenase / GMP reductase domain AC611_15515 PF00535 Glycosyl transferase family 2 AC611_15520 PF00912 Transglycosylase AC611_15525 PF01430 Hsp33 protein AC611_15535 PF07715 TonB-dependent Receptor Plug Domain AC611_15535 PF00593 TonB dependent receptor AC611_15540 PF00440 Bacterial regulatory proteins, tetR family AC611_15550 PF09317 Domain of unknown function (DUF1974) AC611_15550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AC611_15550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AC611_15575 PF00872 Transposase, Mutator family AC611_15595 PF01597 Glycine cleavage H-protein AC611_15600 PF01571 Aminomethyltransferase folate-binding domain AC611_15600 PF08669 Glycine cleavage T-protein C-terminal barrel domain AC611_15610 PF01145 SPFH domain / Band 7 family AC611_15610 PF16200 C-terminal region of band_7 AC611_15615 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AC611_15625 PF00459 Inositol monophosphatase family AC611_15630 PF00293 NUDIX domain AC611_15635 PF00202 Aminotransferase class-III AC611_15640 PF04452 RNA methyltransferase AC611_15645 PF02685 Glucokinase AC611_15675 PF01476 LysM domain AC611_15675 PF00704 Glycosyl hydrolases family 18 AC611_15680 PF02838 Glycosyl hydrolase family 20, domain 2 AC611_15680 PF00728 Glycosyl hydrolase family 20, catalytic domain AC611_15680 PF07691 PA14 domain AC611_15690 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_15690 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC611_15690 PF14310 Fibronectin type III-like domain AC611_15690 PF07691 PA14 domain AC611_15700 PF07971 Glycosyl hydrolase family 92 AC611_15700 PF17678 Glycosyl hydrolase family 92 N-terminal domain AC611_15705 PF01301 Glycosyl hydrolases family 35 AC611_15735 PF03932 CutC family AC611_15740 PF01112 Asparaginase AC611_15750 PF13302 Acetyltransferase (GNAT) domain AC611_15765 PF00072 Response regulator receiver domain AC611_15765 PF01584 CheW-like domain AC611_15765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_15765 PF01627 Hpt domain AC611_15770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AC611_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_15780 PF00072 Response regulator receiver domain AC611_15785 PF00072 Response regulator receiver domain AC611_15790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AC611_15790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AC611_15800 PF03747 ADP-ribosylglycohydrolase AC611_15805 PF00814 Glycoprotease family AC611_15815 PF13307 Helicase C-terminal domain AC611_15815 PF04851 Type III restriction enzyme, res subunit AC611_15825 PF00905 Penicillin binding protein transpeptidase domain AC611_15825 PF14814 Bifunctional transglycosylase second domain AC611_15825 PF00912 Transglycosylase AC611_15830 PF00535 Glycosyl transferase family 2 AC611_15840 PF04607 Region found in RelA / SpoT proteins AC611_15840 PF02824 TGS domain AC611_15840 PF13291 ACT domain AC611_15845 PF12706 Beta-lactamase superfamily domain AC611_15850 PF03070 TENA/THI-4/PQQC family AC611_15855 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AC611_15860 PF04055 Radical SAM superfamily AC611_15860 PF13186 Iron-sulfur cluster-binding domain AC611_15875 PF02685 Glucokinase AC611_15885 PF00872 Transposase, Mutator family AC611_15895 PF00271 Helicase conserved C-terminal domain AC611_15895 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AC611_15895 PF04408 Helicase associated domain (HA2) AC611_15895 PF11898 Domain of unknown function (DUF3418) AC611_15895 PF00270 DEAD/DEAH box helicase AC611_15900 PF00210 Ferritin-like domain AC611_15905 PF00270 DEAD/DEAH box helicase AC611_15905 PF00271 Helicase conserved C-terminal domain AC611_15905 PF00570 HRDC domain AC611_15905 PF09382 RQC domain AC611_15905 PF16124 RecQ zinc-binding AC611_15960 PF02203 Tar ligand binding domain homologue AC611_15960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_15960 PF00672 HAMP domain AC611_15980 PF07536 HWE histidine kinase AC611_15980 PF13426 PAS domain AC611_15980 PF13581 Histidine kinase-like ATPase domain AC611_15985 PF06508 Queuosine biosynthesis protein QueC AC611_15995 PF04055 Radical SAM superfamily AC611_16005 PF00691 OmpA family AC611_16010 PF07676 WD40-like Beta Propeller Repeat AC611_16010 PF04052 TolB amino-terminal domain AC611_16020 PF02472 Biopolymer transport protein ExbD/TolR AC611_16025 PF01618 MotA/TolQ/ExbB proton channel family AC611_16030 PF03061 Thioesterase superfamily AC611_16035 PF17864 RuvB AAA lid domain AC611_16035 PF05491 RuvB C-terminal winged helix domain AC611_16035 PF05496 Holliday junction DNA helicase RuvB P-loop domain AC611_16045 PF02705 K+ potassium transporter AC611_16050 PF07499 RuvA, C-terminal domain AC611_16050 PF01330 RuvA N terminal domain AC611_16055 PF02075 Crossover junction endodeoxyribonuclease RuvC AC611_16060 PF01709 Transcriptional regulator AC611_16075 PF02938 GAD domain AC611_16075 PF00152 tRNA synthetases class II (D, K and N) AC611_16075 PF01336 OB-fold nucleic acid binding domain AC611_16090 PF07690 Major Facilitator Superfamily AC611_16100 PF05506 Domain of unknown function (DUF756) AC611_16100 PF04185 Phosphoesterase family AC611_16110 PF13472 GDSL-like Lipase/Acylhydrolase family AC611_16110 PF07859 alpha/beta hydrolase fold AC611_16120 PF03466 LysR substrate binding domain AC611_16120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_16130 PF00005 ABC transporter AC611_16130 PF12848 ABC transporter AC611_16135 PF00593 TonB dependent receptor AC611_16135 PF07715 TonB-dependent Receptor Plug Domain AC611_16145 PF07715 TonB-dependent Receptor Plug Domain AC611_16145 PF00593 TonB dependent receptor AC611_16150 PF00593 TonB dependent receptor AC611_16150 PF07715 TonB-dependent Receptor Plug Domain AC611_16160 PF02254 TrkA-N domain AC611_16160 PF00999 Sodium/hydrogen exchanger family AC611_16185 PF07715 TonB-dependent Receptor Plug Domain AC611_16185 PF07660 Secretin and TonB N terminus short domain AC611_16185 PF00593 TonB dependent receptor AC611_16195 PF06276 Ferric iron reductase FhuF-like transporter AC611_16195 PF04183 IucA / IucC family AC611_16200 PF07690 Major Facilitator Superfamily AC611_16210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AC611_16210 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC611_16225 PF02654 Cobalamin-5-phosphate synthase AC611_16235 PF02277 Phosphoribosyltransferase AC611_16240 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AC611_16245 PF07685 CobB/CobQ-like glutamine amidotransferase domain AC611_16245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AC611_16250 PF00155 Aminotransferase class I and II AC611_16255 PF17113 Regulatory signalling modulator protein AmpE AC611_16255 PF03186 CobD/Cbib protein AC611_16260 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AC611_16260 PF12557 Cob(I)alamin adenosyltransferase N terminal AC611_16275 PF00593 TonB dependent receptor AC611_16275 PF07715 TonB-dependent Receptor Plug Domain AC611_16285 PF02861 Clp amino terminal domain, pathogenicity island component AC611_16285 PF00004 ATPase family associated with various cellular activities (AAA) AC611_16285 PF07724 AAA domain (Cdc48 subfamily) AC611_16285 PF17871 AAA lid domain AC611_16285 PF10431 C-terminal, D2-small domain, of ClpB protein AC611_16295 PF01541 GIY-YIG catalytic domain AC611_16330 PF07715 TonB-dependent Receptor Plug Domain AC611_16330 PF00593 TonB dependent receptor AC611_16335 PF02358 Trehalose-phosphatase AC611_16340 PF00723 Glycosyl hydrolases family 15 AC611_16345 PF00982 Glycosyltransferase family 20 AC611_16350 PF01011 PQQ enzyme repeat AC611_16370 PF00672 HAMP domain AC611_16370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_16370 PF02203 Tar ligand binding domain homologue AC611_16375 PF04134 Protein of unknown function, DUF393 AC611_16390 PF00849 RNA pseudouridylate synthase AC611_16395 PF13525 Outer membrane lipoprotein AC611_16405 PF00795 Carbon-nitrogen hydrolase AC611_16405 PF02540 NAD synthase AC611_16420 PF02629 CoA binding domain AC611_16420 PF00549 CoA-ligase AC611_16425 PF00549 CoA-ligase AC611_16425 PF08442 ATP-grasp domain AC611_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_16430 PF00512 His Kinase A (phospho-acceptor) domain AC611_16440 PF00158 Sigma-54 interaction domain AC611_16440 PF00072 Response regulator receiver domain AC611_16440 PF02954 Bacterial regulatory protein, Fis family AC611_16445 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC611_16445 PF00437 Type II/IV secretion system protein AC611_16450 PF00437 Type II/IV secretion system protein AC611_16450 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC611_16455 PF00114 Pilin (bacterial filament) AC611_16455 PF07963 Prokaryotic N-terminal methylation motif AC611_16460 PF07963 Prokaryotic N-terminal methylation motif AC611_16460 PF00114 Pilin (bacterial filament) AC611_16465 PF00872 Transposase, Mutator family AC611_16470 PF00482 Type II secretion system (T2SS), protein F AC611_16475 PF06750 Bacterial Peptidase A24 N-terminal domain AC611_16475 PF01478 Type IV leader peptidase family AC611_16480 PF01121 Dephospho-CoA kinase AC611_16495 PF00989 PAS fold AC611_16495 PF00512 His Kinase A (phospho-acceptor) domain AC611_16495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_16495 PF11808 Phosphate regulon sensor protein PhoR AC611_16500 PF00072 Response regulator receiver domain AC611_16500 PF00486 Transcriptional regulatory protein, C terminal AC611_16510 PF08443 RimK-like ATP-grasp domain AC611_16510 PF18030 RimK PreATP-grasp domain AC611_16515 PF00128 Alpha amylase, catalytic domain AC611_16515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AC611_16535 PF01527 Transposase AC611_16540 PF13333 Integrase core domain AC611_16540 PF00665 Integrase core domain AC611_16540 PF13276 HTH-like domain AC611_16555 PF04002 RadC-like JAB domain AC611_16575 PF01609 Transposase DDE domain AC611_16575 PF05598 Transposase domain (DUF772) AC611_16580 PF00872 Transposase, Mutator family AC611_16590 PF00872 Transposase, Mutator family AC611_16610 PF13438 Domain of unknown function (DUF4113) AC611_16610 PF11799 impB/mucB/samB family C-terminal domain AC611_16610 PF00817 impB/mucB/samB family AC611_16615 PF00717 Peptidase S24-like AC611_16635 PF13614 AAA domain AC611_16700 PF01131 DNA topoisomerase AC611_16700 PF01751 Toprim domain AC611_16705 PF00145 C-5 cytosine-specific DNA methylase AC611_16760 PF06067 Domain of unknown function (DUF932) AC611_16795 PF00872 Transposase, Mutator family AC611_16910 PF00990 Diguanylate cyclase, GGDEF domain AC611_16910 PF00563 EAL domain AC611_16910 PF08448 PAS fold AC611_16910 PF08447 PAS fold AC611_16935 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AC611_16990 PF03466 LysR substrate binding domain AC611_16990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_17010 PF00589 Phage integrase family AC611_17010 PF14659 Phage integrase, N-terminal SAM-like domain AC611_17010 PF13356 Arm DNA-binding domain AC611_17020 PF00657 GDSL-like Lipase/Acylhydrolase AC611_17020 PF03797 Autotransporter beta-domain AC611_17030 PF05690 Thiazole biosynthesis protein ThiG AC611_17035 PF02390 Putative methyltransferase AC611_17040 PF02080 TrkA-C domain AC611_17040 PF03600 Citrate transporter AC611_17060 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC611_17065 PF01741 Large-conductance mechanosensitive channel, MscL AC611_17080 PF00356 Bacterial regulatory proteins, lacI family AC611_17090 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC611_17090 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AC611_17090 PF00703 Glycosyl hydrolases family 2 AC611_17095 PF10566 Glycoside hydrolase 97 AC611_17095 PF14508 Glycosyl-hydrolase 97 N-terminal AC611_17095 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AC611_17100 PF00135 Carboxylesterase family AC611_17105 PF00588 SpoU rRNA Methylase family AC611_17105 PF08032 RNA 2'-O ribose methyltransferase substrate binding AC611_17115 PF11838 ERAP1-like C-terminal domain AC611_17115 PF01433 Peptidase family M1 domain AC611_17120 PF00873 AcrB/AcrD/AcrF family AC611_17125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_17125 PF00529 HlyD membrane-fusion protein of T1SS AC611_17130 PF00009 Elongation factor Tu GTP binding domain AC611_17135 PF01507 Phosphoadenosine phosphosulfate reductase family AC611_17140 PF00175 Oxidoreductase NAD-binding domain AC611_17140 PF00667 FAD binding domain AC611_17140 PF00258 Flavodoxin AC611_17145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AC611_17145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AC611_17150 PF01507 Phosphoadenosine phosphosulfate reductase family AC611_17170 PF00072 Response regulator receiver domain AC611_17170 PF01627 Hpt domain AC611_17170 PF00512 His Kinase A (phospho-acceptor) domain AC611_17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_17180 PF03466 LysR substrate binding domain AC611_17180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_17185 PF14824 Sirohaem biosynthesis protein central AC611_17185 PF10414 Sirohaem synthase dimerisation region AC611_17185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AC611_17190 PF00291 Pyridoxal-phosphate dependent enzyme AC611_17200 PF01661 Macro domain AC611_17205 PF00274 Fructose-bisphosphate aldolase class-I AC611_17210 PF00224 Pyruvate kinase, barrel domain AC611_17210 PF02887 Pyruvate kinase, alpha/beta domain AC611_17220 PF00162 Phosphoglycerate kinase AC611_17250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AC611_17250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AC611_17260 PF03922 OmpW family AC611_17275 PF00753 Metallo-beta-lactamase superfamily AC611_17275 PF04273 Putative phosphatase (DUF442) AC611_17285 PF00528 Binding-protein-dependent transport system inner membrane component AC611_17290 PF03459 TOBE domain AC611_17290 PF00005 ABC transporter AC611_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_17310 PF08521 Two-component sensor kinase N-terminal AC611_17310 PF00512 His Kinase A (phospho-acceptor) domain AC611_17315 PF00072 Response regulator receiver domain AC611_17315 PF00486 Transcriptional regulatory protein, C terminal AC611_17335 PF00501 AMP-binding enzyme AC611_17360 PF01476 LysM domain AC611_17360 PF03734 L,D-transpeptidase catalytic domain AC611_17365 PF04225 Opacity-associated protein A LysM-like domain AC611_17365 PF01551 Peptidase family M23 AC611_17385 PF00456 Transketolase, thiamine diphosphate binding domain AC611_17385 PF02779 Transketolase, pyrimidine binding domain AC611_17385 PF02780 Transketolase, C-terminal domain AC611_17390 PF00375 Sodium:dicarboxylate symporter family AC611_17400 PF00092 von Willebrand factor type A domain AC611_17400 PF07584 Aerotolerance regulator N-terminal AC611_17420 PF07726 ATPase family associated with various cellular activities (AAA) AC611_17420 PF17863 AAA lid domain AC611_17425 PF11741 AMIN domain AC611_17425 PF07660 Secretin and TonB N terminus short domain AC611_17425 PF03958 Bacterial type II/III secretion system short domain AC611_17425 PF00263 Bacterial type II and III secretion system protein AC611_17450 PF00905 Penicillin binding protein transpeptidase domain AC611_17450 PF00912 Transglycosylase AC611_17450 PF17092 Penicillin-binding protein OB-like domain AC611_17460 PF00285 Citrate synthase, C-terminal domain AC611_17465 PF01197 Ribosomal protein L31 AC611_17470 PF01156 Inosine-uridine preferring nucleoside hydrolase AC611_17475 PF00270 DEAD/DEAH box helicase AC611_17475 PF00271 Helicase conserved C-terminal domain AC611_17475 PF17191 RecG wedge domain AC611_17480 PF01042 Endoribonuclease L-PSP AC611_17485 PF02824 TGS domain AC611_17485 PF04607 Region found in RelA / SpoT proteins AC611_17485 PF13291 ACT domain AC611_17490 PF01192 RNA polymerase Rpb6 AC611_17495 PF00625 Guanylate kinase AC611_17500 PF03755 YicC-like family, N-terminal region AC611_17500 PF08340 Domain of unknown function (DUF1732) AC611_17505 PF03725 3' exoribonuclease family, domain 2 AC611_17505 PF01138 3' exoribonuclease family, domain 1 AC611_17515 PF01725 Ham1 family AC611_17520 PF04055 Radical SAM superfamily AC611_17520 PF06969 HemN C-terminal domain AC611_17535 PF00557 Metallopeptidase family M24 AC611_17545 PF05195 Aminopeptidase P, N-terminal domain AC611_17545 PF00557 Metallopeptidase family M24 AC611_17550 PF03695 Uncharacterised protein family (UPF0149) AC611_17560 PF05164 Cell division protein ZapA AC611_17565 PF01812 5-formyltetrahydrofolate cyclo-ligase family AC611_17575 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AC611_17585 PF13369 Transglutaminase-like superfamily AC611_17590 PF00301 Rubredoxin AC611_17595 PF02581 Thiamine monophosphate synthase AC611_17620 PF00202 Aminotransferase class-III AC611_17625 PF00196 Bacterial regulatory proteins, luxR family AC611_17625 PF17874 MalT-like TPR region AC611_17630 PF00127 Copper binding proteins, plastocyanin/azurin family AC611_17635 PF00155 Aminotransferase class I and II AC611_17645 PF00034 Cytochrome c AC611_17645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AC611_17650 PF01593 Flavin containing amine oxidoreductase AC611_17665 PF00202 Aminotransferase class-III AC611_17670 PF00027 Cyclic nucleotide-binding domain AC611_17670 PF00520 Ion transport protein AC611_17685 PF01569 PAP2 superfamily AC611_17690 PF01062 Bestrophin, RFP-TM, chloride channel AC611_17700 PF02875 Mur ligase family, glutamate ligase domain AC611_17700 PF01225 Mur ligase family, catalytic domain AC611_17700 PF08245 Mur ligase middle domain AC611_17710 PF00365 Phosphofructokinase AC611_17720 PF03030 Inorganic H+ pyrophosphatase AC611_17730 PF00719 Inorganic pyrophosphatase AC611_17740 PF07715 TonB-dependent Receptor Plug Domain AC611_17740 PF00593 TonB dependent receptor AC611_17745 PF12833 Helix-turn-helix domain AC611_17750 PF00486 Transcriptional regulatory protein, C terminal AC611_17750 PF18500 CadC C-terminal domain 1 AC611_17755 PF13667 ThiC-associated domain AC611_17755 PF01964 Radical SAM ThiC family AC611_17760 PF00593 TonB dependent receptor AC611_17760 PF07715 TonB-dependent Receptor Plug Domain AC611_17765 PF00672 HAMP domain AC611_17765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AC611_17765 PF02203 Tar ligand binding domain homologue AC611_17775 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AC611_17775 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AC611_17780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AC611_17780 PF00205 Thiamine pyrophosphate enzyme, central domain AC611_17780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AC611_17790 PF00291 Pyridoxal-phosphate dependent enzyme AC611_17795 PF08502 LeuA allosteric (dimerisation) domain AC611_17795 PF00682 HMGL-like AC611_17800 PF00180 Isocitrate/isopropylmalate dehydrogenase AC611_17805 PF00694 Aconitase C-terminal domain AC611_17810 PF00330 Aconitase family (aconitate hydratase) AC611_17815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_17835 PF02321 Outer membrane efflux protein AC611_17840 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AC611_17845 PF03279 Bacterial lipid A biosynthesis acyltransferase AC611_17870 PF00390 Malic enzyme, N-terminal domain AC611_17870 PF01515 Phosphate acetyl/butaryl transferase AC611_17870 PF03949 Malic enzyme, NAD binding domain AC611_17875 PF00375 Sodium:dicarboxylate symporter family AC611_17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_17885 PF02743 Cache domain AC611_17885 PF00512 His Kinase A (phospho-acceptor) domain AC611_17890 PF07690 Major Facilitator Superfamily AC611_17900 PF03466 LysR substrate binding domain AC611_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_17910 PF00248 Aldo/keto reductase family AC611_17925 PF00072 Response regulator receiver domain AC611_17925 PF00196 Bacterial regulatory proteins, luxR family AC611_17935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_17935 PF08521 Two-component sensor kinase N-terminal AC611_17935 PF00512 His Kinase A (phospho-acceptor) domain AC611_17940 PF00072 Response regulator receiver domain AC611_17940 PF00486 Transcriptional regulatory protein, C terminal AC611_17950 PF03600 Citrate transporter AC611_17955 PF00106 short chain dehydrogenase AC611_17960 PF00356 Bacterial regulatory proteins, lacI family AC611_17975 PF00128 Alpha amylase, catalytic domain AC611_17990 PF03193 RsgA GTPase AC611_17995 PF00155 Aminotransferase class I and II AC611_18010 PF01522 Polysaccharide deacetylase AC611_18015 PF00462 Glutaredoxin AC611_18030 PF01979 Amidohydrolase family AC611_18035 PF01979 Amidohydrolase family AC611_18060 PF00872 Transposase, Mutator family AC611_18070 PF02645 Uncharacterised protein, DegV family COG1307 AC611_18080 PF01527 Transposase AC611_18085 PF13276 HTH-like domain AC611_18085 PF13333 Integrase core domain AC611_18085 PF00665 Integrase core domain AC611_18090 PF00756 Putative esterase AC611_18095 PF04828 Glutathione-dependent formaldehyde-activating enzyme AC611_18100 PF08240 Alcohol dehydrogenase GroES-like domain AC611_18100 PF00107 Zinc-binding dehydrogenase AC611_18105 PF02583 Metal-sensitive transcriptional repressor AC611_18120 PF00072 Response regulator receiver domain AC611_18120 PF00486 Transcriptional regulatory protein, C terminal AC611_18125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_18125 PF00672 HAMP domain AC611_18125 PF00512 His Kinase A (phospho-acceptor) domain AC611_18135 PF04107 Glutamate-cysteine ligase family 2(GCS2) AC611_18145 PF01926 50S ribosome-binding GTPase AC611_18150 PF00034 Cytochrome c AC611_18160 PF01323 DSBA-like thioredoxin domain AC611_18170 PF02028 BCCT, betaine/carnitine/choline family transporter AC611_18175 PF00171 Aldehyde dehydrogenase family AC611_18180 PF00732 GMC oxidoreductase AC611_18180 PF05199 GMC oxidoreductase AC611_18185 PF00544 Pectate lyase AC611_18205 PF01066 CDP-alcohol phosphatidyltransferase AC611_18215 PF03129 Anticodon binding domain AC611_18215 PF04073 Aminoacyl-tRNA editing domain AC611_18215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AC611_18220 PF00816 H-NS histone family AC611_18230 PF02405 Permease MlaE AC611_18235 PF00005 ABC transporter AC611_18240 PF03886 ABC-type transport auxiliary lipoprotein component AC611_18240 PF02470 MlaD protein AC611_18260 PF01144 Coenzyme A transferase AC611_18265 PF01144 Coenzyme A transferase AC611_18270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC611_18270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC611_18270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC611_18270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC611_18275 PF01050 Mannose-6-phosphate isomerase AC611_18275 PF00483 Nucleotidyl transferase AC611_18280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AC611_18280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AC611_18280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AC611_18285 PF04321 RmlD substrate binding domain AC611_18290 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AC611_18295 PF00483 Nucleotidyl transferase AC611_18300 PF16363 GDP-mannose 4,6 dehydratase AC611_18305 PF01012 Electron transfer flavoprotein domain AC611_18310 PF01012 Electron transfer flavoprotein domain AC611_18310 PF00766 Electron transfer flavoprotein FAD-binding domain AC611_18320 PF01040 UbiA prenyltransferase family AC611_18325 PF01565 FAD binding domain AC611_18325 PF04030 D-arabinono-1,4-lactone oxidase AC611_18330 PF00106 short chain dehydrogenase AC611_18335 PF01370 NAD dependent epimerase/dehydratase family AC611_18370 PF16363 GDP-mannose 4,6 dehydratase AC611_18375 PF00534 Glycosyl transferases group 1 AC611_18375 PF13477 Glycosyl transferase 4-like AC611_18380 PF13847 Methyltransferase domain AC611_18380 PF00069 Protein kinase domain AC611_18385 PF00005 ABC transporter AC611_18415 PF01053 Cys/Met metabolism PLP-dependent enzyme AC611_18420 PF00291 Pyridoxal-phosphate dependent enzyme AC611_18420 PF00571 CBS domain AC611_18440 PF00437 Type II/IV secretion system protein AC611_18445 PF14497 Glutathione S-transferase, C-terminal domain AC611_18445 PF02798 Glutathione S-transferase, N-terminal domain AC611_18455 PF00271 Helicase conserved C-terminal domain AC611_18455 PF00270 DEAD/DEAH box helicase AC611_18460 PF01242 6-pyruvoyl tetrahydropterin synthase AC611_18480 PF13185 GAF domain AC611_18490 PF13419 Haloacid dehalogenase-like hydrolase AC611_18495 PF11799 impB/mucB/samB family C-terminal domain AC611_18495 PF00817 impB/mucB/samB family AC611_18500 PF07977 FabA-like domain AC611_18505 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_18505 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_18510 PF08239 Bacterial SH3 domain AC611_18520 PF01432 Peptidase family M3 AC611_18535 PF07731 Multicopper oxidase AC611_18535 PF07732 Multicopper oxidase AC611_18535 PF00394 Multicopper oxidase AC611_18540 PF05275 Copper resistance protein B precursor (CopB) AC611_18545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AC611_18570 PF01380 SIS domain AC611_18575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_18580 PF00005 ABC transporter AC611_18585 PF12704 MacB-like periplasmic core domain AC611_18585 PF02687 FtsX-like permease family AC611_18585 PF00005 ABC transporter AC611_18590 PF02687 FtsX-like permease family AC611_18590 PF00005 ABC transporter AC611_18590 PF12704 MacB-like periplasmic core domain AC611_18600 PF00072 Response regulator receiver domain AC611_18600 PF00158 Sigma-54 interaction domain AC611_18600 PF02954 Bacterial regulatory protein, Fis family AC611_18605 PF00512 His Kinase A (phospho-acceptor) domain AC611_18605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_18610 PF00132 Bacterial transferase hexapeptide (six repeats) AC611_18610 PF14602 Hexapeptide repeat of succinyl-transferase AC611_18610 PF12804 MobA-like NTP transferase domain AC611_18620 PF01817 Chorismate mutase type II AC611_18625 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AC611_18625 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AC611_18630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_18630 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC611_18635 PF00231 ATP synthase AC611_18640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_18640 PF00306 ATP synthase alpha/beta chain, C terminal domain AC611_18640 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC611_18645 PF00213 ATP synthase delta (OSCP) subunit AC611_18650 PF00430 ATP synthase B/B' CF(0) AC611_18655 PF00137 ATP synthase subunit C AC611_18660 PF00119 ATP synthase A chain AC611_18680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AC611_18680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AC611_18690 PF02817 e3 binding domain AC611_18690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AC611_18690 PF00364 Biotin-requiring enzyme AC611_18725 PF03180 NLPA lipoprotein AC611_18730 PF00528 Binding-protein-dependent transport system inner membrane component AC611_18735 PF00005 ABC transporter AC611_18735 PF09383 NIL domain AC611_18740 PF00892 EamA-like transporter family AC611_18745 PF04461 Protein of unknown function (DUF520) AC611_18755 PF00989 PAS fold AC611_18755 PF01627 Hpt domain AC611_18755 PF18415 Histidine kinase receptor ArcB trans-membrane domain AC611_18755 PF00512 His Kinase A (phospho-acceptor) domain AC611_18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_18755 PF00072 Response regulator receiver domain AC611_18780 PF13419 Haloacid dehalogenase-like hydrolase AC611_18785 PF00849 RNA pseudouridylate synthase AC611_18785 PF01479 S4 domain AC611_18790 PF08468 Methyltransferase small domain N-terminal AC611_18790 PF05175 Methyltransferase small domain AC611_18800 PF01609 Transposase DDE domain AC611_18800 PF05598 Transposase domain (DUF772) AC611_18805 PF00872 Transposase, Mutator family AC611_18810 PF07995 Glucose / Sorbosone dehydrogenase AC611_18820 PF00989 PAS fold AC611_18820 PF00512 His Kinase A (phospho-acceptor) domain AC611_18820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_18840 PF01168 Alanine racemase, N-terminal domain AC611_18840 PF00842 Alanine racemase, C-terminal domain AC611_18845 PF01266 FAD dependent oxidoreductase AC611_18850 PF01037 Lrp/AsnC ligand binding domain AC611_18860 PF01641 SelR domain AC611_18870 PF01618 MotA/TolQ/ExbB proton channel family AC611_18875 PF13677 Membrane MotB of proton-channel complex MotA/MotB AC611_18875 PF00691 OmpA family AC611_18900 PF01061 ABC-2 type transporter AC611_18905 PF00005 ABC transporter AC611_18910 PF00999 Sodium/hydrogen exchanger family AC611_18915 PF02469 Fasciclin domain AC611_18920 PF03167 Uracil DNA glycosylase superfamily AC611_18930 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AC611_18940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_18940 PF03466 LysR substrate binding domain AC611_18945 PF03358 NADPH-dependent FMN reductase AC611_18950 PF00248 Aldo/keto reductase family AC611_18960 PF01431 Peptidase family M13 AC611_18960 PF05649 Peptidase family M13 AC611_18975 PF13520 Amino acid permease AC611_18985 PF04397 LytTr DNA-binding domain AC611_18985 PF00072 Response regulator receiver domain AC611_18990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_18990 PF06580 Histidine kinase AC611_18990 PF00672 HAMP domain AC611_18990 PF02743 Cache domain AC611_19005 PF05974 Domain of unknown function (DUF892) AC611_19010 PF05067 Manganese containing catalase AC611_19030 PF03705 CheR methyltransferase, all-alpha domain AC611_19030 PF08448 PAS fold AC611_19030 PF01339 CheB methylesterase AC611_19030 PF01739 CheR methyltransferase, SAM binding domain AC611_19045 PF00072 Response regulator receiver domain AC611_19045 PF00158 Sigma-54 interaction domain AC611_19045 PF02954 Bacterial regulatory protein, Fis family AC611_19060 PF01654 Cytochrome bd terminal oxidase subunit I AC611_19065 PF02322 Cytochrome bd terminal oxidase subunit II AC611_19100 PF00107 Zinc-binding dehydrogenase AC611_19100 PF08240 Alcohol dehydrogenase GroES-like domain AC611_19100 PF13823 Alcohol dehydrogenase GroES-associated AC611_19110 PF00872 Transposase, Mutator family AC611_19160 PF00005 ABC transporter AC611_19170 PF03466 LysR substrate binding domain AC611_19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_19175 PF01042 Endoribonuclease L-PSP AC611_19205 PF01740 STAS domain AC611_19205 PF00916 Sulfate permease family AC611_19210 PF00654 Voltage gated chloride channel AC611_19220 PF00557 Metallopeptidase family M24 AC611_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_19230 PF03466 LysR substrate binding domain AC611_19255 PF04546 Sigma-70, non-essential region AC611_19255 PF04545 Sigma-70, region 4 AC611_19255 PF04539 Sigma-70 region 3 AC611_19255 PF04542 Sigma-70 region 2 AC611_19255 PF00140 Sigma-70 factor, region 1.2 AC611_19255 PF03979 Sigma-70 factor, region 1.1 AC611_19260 PF02580 D-Tyr-tRNA(Tyr) deacylase AC611_19265 PF03279 Bacterial lipid A biosynthesis acyltransferase AC611_19280 PF00925 GTP cyclohydrolase II AC611_19300 PF00535 Glycosyl transferase family 2 AC611_19315 PF01189 16S rRNA methyltransferase RsmB/F AC611_19315 PF01029 NusB family AC611_19320 PF00551 Formyl transferase AC611_19320 PF02911 Formyl transferase, C-terminal domain AC611_19325 PF01327 Polypeptide deformylase AC611_19330 PF01476 LysM domain AC611_19335 PF02481 DNA recombination-mediator protein A AC611_19335 PF17782 DprA winged helix domain AC611_19340 PF04361 Protein of unknown function (DUF494) AC611_19345 PF07963 Prokaryotic N-terminal methylation motif AC611_19345 PF00114 Pilin (bacterial filament) AC611_19355 PF13368 Topoisomerase C-terminal repeat AC611_19355 PF01751 Toprim domain AC611_19355 PF01131 DNA topoisomerase AC611_19360 PF01300 Telomere recombination AC611_19385 PF01343 Peptidase family S49 AC611_19390 PF01554 MatE AC611_19410 PF00270 DEAD/DEAH box helicase AC611_19410 PF00271 Helicase conserved C-terminal domain AC611_19410 PF18074 Primosomal protein N C-terminal domain AC611_19410 PF17764 3′ DNA-binding domain (3′BD) AC611_19410 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AC611_19415 PF00043 Glutathione S-transferase, C-terminal domain AC611_19415 PF13417 Glutathione S-transferase, N-terminal domain AC611_19435 PF03458 UPF0126 domain AC611_19440 PF04545 Sigma-70, region 4 AC611_19440 PF04542 Sigma-70 region 2 AC611_19445 PF03167 Uracil DNA glycosylase superfamily AC611_19450 PF01339 CheB methylesterase AC611_19450 PF00072 Response regulator receiver domain AC611_19455 PF18075 FtsX extracellular domain AC611_19460 PF00005 ABC transporter AC611_19465 PF12300 ATP-dependent RNA helicase RhlB AC611_19465 PF00270 DEAD/DEAH box helicase AC611_19465 PF00271 Helicase conserved C-terminal domain AC611_19470 PF00085 Thioredoxin AC611_19475 PF07497 Rho termination factor, RNA-binding domain AC611_19475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_19475 PF07498 Rho termination factor, N-terminal domain AC611_19485 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AC611_19500 PF03971 Monomeric isocitrate dehydrogenase AC611_19510 PF04972 BON domain AC611_19510 PF01476 LysM domain AC611_19515 PF14489 QueF-like protein AC611_19515 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AC611_19520 PF07687 Peptidase dimerisation domain AC611_19520 PF01546 Peptidase family M20/M25/M40 AC611_19525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_19530 PF00873 AcrB/AcrD/AcrF family AC611_19535 PF00873 AcrB/AcrD/AcrF family AC611_19550 PF07063 Domain of unknown function (DUF1338) AC611_19575 PF00872 Transposase, Mutator family AC611_19595 PF01427 D-ala-D-ala dipeptidase AC611_19600 PF01510 N-acetylmuramoyl-L-alanine amidase AC611_19620 PF13520 Amino acid permease AC611_19640 PF00872 Transposase, Mutator family AC611_19650 PF07995 Glucose / Sorbosone dehydrogenase AC611_19665 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC611_19665 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_19665 PF14310 Fibronectin type III-like domain AC611_19670 PF02152 Dihydroneopterin aldolase AC611_19675 PF00814 Glycoprotease family AC611_19680 PF01165 Ribosomal protein S21 AC611_19685 PF09424 Yqey-like protein AC611_19695 PF03631 Virulence factor BrkB AC611_19700 PF10410 DnaB-helicase binding domain of primase AC611_19700 PF08278 DNA primase DnaG DnaB-binding AC611_19700 PF08275 DNA primase catalytic core, N-terminal domain AC611_19700 PF01807 CHC2 zinc finger AC611_19705 PF13593 SBF-like CPA transporter family (DUF4137) AC611_19715 PF01040 UbiA prenyltransferase family AC611_19740 PF00510 Cytochrome c oxidase subunit III AC611_19745 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AC611_19755 PF00115 Cytochrome C and Quinol oxidase polypeptide I AC611_19760 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AC611_19760 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AC611_19800 PF00579 tRNA synthetases class I (W and Y) AC611_19805 PF04225 Opacity-associated protein A LysM-like domain AC611_19805 PF01551 Peptidase family M23 AC611_19810 PF03702 Anhydro-N-acetylmuramic acid kinase AC611_19820 PF07690 Major Facilitator Superfamily AC611_19825 PF03372 Endonuclease/Exonuclease/phosphatase family AC611_19830 PF00156 Phosphoribosyl transferase domain AC611_19840 PF13614 AAA domain AC611_19845 PF17762 HTH domain found in ParB protein AC611_19845 PF02195 ParB-like nuclease domain AC611_19855 PF01370 NAD dependent epimerase/dehydratase family AC611_19860 PF00535 Glycosyl transferase family 2 AC611_19875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AC611_19875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AC611_19875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AC611_19875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AC611_19880 PF00692 dUTPase AC611_19885 PF02441 Flavoprotein AC611_19885 PF04127 DNA / pantothenate metabolism flavoprotein AC611_19890 PF04002 RadC-like JAB domain AC611_19895 PF00750 tRNA synthetases class I (R) AC611_19895 PF05746 DALR anticodon binding domain AC611_19895 PF03485 Arginyl tRNA synthetase N terminal domain AC611_19910 PF00106 short chain dehydrogenase AC611_19920 PF01757 Acyltransferase family AC611_19925 PF03033 Glycosyltransferase family 28 N-terminal domain AC611_19930 PF13193 AMP-binding enzyme C-terminal domain AC611_19930 PF00668 Condensation domain AC611_19930 PF00550 Phosphopantetheine attachment site AC611_19930 PF00975 Thioesterase domain AC611_19930 PF00501 AMP-binding enzyme AC611_19935 PF17810 Arginine decarboxylase helical bundle domain AC611_19935 PF17944 Arginine decarboxylase C-terminal helical extension AC611_19935 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AC611_19940 PF17284 Spermidine synthase tetramerisation domain AC611_19965 PF00754 F5/8 type C domain AC611_19965 PF02838 Glycosyl hydrolase family 20, domain 2 AC611_19965 PF00963 Cohesin domain AC611_19965 PF07555 beta-N-acetylglucosaminidase AC611_19965 PF00041 Fibronectin type III domain AC611_19970 PF00543 Nitrogen regulatory protein P-II AC611_19975 PF04380 Membrane fusogenic activity AC611_19980 PF01078 Magnesium chelatase, subunit ChlI AC611_19980 PF13335 Magnesium chelatase, subunit ChlI C-terminal AC611_19995 PF12792 CSS motif domain associated with EAL AC611_19995 PF00563 EAL domain AC611_20000 PF00487 Fatty acid desaturase AC611_20005 PF00970 Oxidoreductase FAD-binding domain AC611_20005 PF00111 2Fe-2S iron-sulfur cluster binding domain AC611_20005 PF00175 Oxidoreductase NAD-binding domain AC611_20010 PF00440 Bacterial regulatory proteins, tetR family AC611_20030 PF01139 tRNA-splicing ligase RtcB AC611_20070 PF01370 NAD dependent epimerase/dehydratase family AC611_20070 PF08338 Domain of unknown function (DUF1731) AC611_20075 PF00486 Transcriptional regulatory protein, C terminal AC611_20075 PF00072 Response regulator receiver domain AC611_20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_20080 PF08521 Two-component sensor kinase N-terminal AC611_20080 PF00512 His Kinase A (phospho-acceptor) domain AC611_20100 PF00595 PDZ domain AC611_20120 PF01594 AI-2E family transporter AC611_20125 PF13419 Haloacid dehalogenase-like hydrolase AC611_20130 PF00883 Cytosol aminopeptidase family, catalytic domain AC611_20130 PF02789 Cytosol aminopeptidase family, N-terminal domain AC611_20140 PF04542 Sigma-70 region 2 AC611_20140 PF08281 Sigma-70, region 4 AC611_20145 PF00199 Catalase AC611_20165 PF00196 Bacterial regulatory proteins, luxR family AC611_20165 PF00072 Response regulator receiver domain AC611_20170 PF07730 Histidine kinase AC611_20175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_20180 PF00005 ABC transporter AC611_20205 PF00892 EamA-like transporter family AC611_20225 PF00753 Metallo-beta-lactamase superfamily AC611_20230 PF00579 tRNA synthetases class I (W and Y) AC611_20235 PF05532 CsbD-like AC611_20250 PF00491 Arginase family AC611_20275 PF02223 Thymidylate kinase AC611_20290 PF03309 Type III pantothenate kinase AC611_20295 PF02237 Biotin protein ligase C terminal domain AC611_20295 PF03099 Biotin/lipoate A/B protein ligase family AC611_20295 PF08279 HTH domain AC611_20305 PF06167 Glucose-regulated metallo-peptidase M90 AC611_20320 PF00672 HAMP domain AC611_20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_20320 PF00512 His Kinase A (phospho-acceptor) domain AC611_20325 PF00072 Response regulator receiver domain AC611_20325 PF00486 Transcriptional regulatory protein, C terminal AC611_20335 PF01207 Dihydrouridine synthase (Dus) AC611_20350 PF06628 Catalase-related immune-responsive AC611_20350 PF00199 Catalase AC611_20375 PF00872 Transposase, Mutator family AC611_20380 PF00664 ABC transporter transmembrane region AC611_20380 PF03412 Peptidase C39 family AC611_20380 PF00005 ABC transporter AC611_20385 PF00529 HlyD membrane-fusion protein of T1SS AC611_20385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_20390 PF06733 DEAD_2 AC611_20390 PF13307 Helicase C-terminal domain AC611_20405 PF01488 Shikimate / quinate 5-dehydrogenase AC611_20405 PF08501 Shikimate dehydrogenase substrate binding domain AC611_20405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AC611_20415 PF00175 Oxidoreductase NAD-binding domain AC611_20415 PF00258 Flavodoxin AC611_20415 PF00667 FAD binding domain AC611_20425 PF00490 Delta-aminolevulinic acid dehydratase AC611_20450 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AC611_20450 PF00326 Prolyl oligopeptidase family AC611_20480 PF04820 Tryptophan halogenase AC611_20495 PF00005 ABC transporter AC611_20505 PF01381 Helix-turn-helix AC611_20515 PF01229 Glycosyl hydrolases family 39 AC611_20520 PF02583 Metal-sensitive transcriptional repressor AC611_20525 PF01545 Cation efflux family AC611_20530 PF00970 Oxidoreductase FAD-binding domain AC611_20530 PF00111 2Fe-2S iron-sulfur cluster binding domain AC611_20530 PF00175 Oxidoreductase NAD-binding domain AC611_20535 PF00005 ABC transporter AC611_20540 PF01061 ABC-2 type transporter AC611_20545 PF08546 Ketopantoate reductase PanE/ApbA C terminal AC611_20545 PF02558 Ketopantoate reductase PanE/ApbA AC611_20575 PF00085 Thioredoxin AC611_20595 PF00268 Ribonucleotide reductase, small chain AC611_20600 PF00317 Ribonucleotide reductase, all-alpha domain AC611_20600 PF02867 Ribonucleotide reductase, barrel domain AC611_20600 PF03477 ATP cone domain AC611_20610 PF00583 Acetyltransferase (GNAT) family AC611_20610 PF13607 Succinyl-CoA ligase like flavodoxin domain AC611_20610 PF13380 CoA binding domain AC611_20615 PF03448 MgtE intracellular N domain AC611_20615 PF00571 CBS domain AC611_20615 PF01769 Divalent cation transporter AC611_20620 PF00194 Eukaryotic-type carbonic anhydrase AC611_20625 PF00999 Sodium/hydrogen exchanger family AC611_20625 PF02254 TrkA-N domain AC611_20640 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AC611_20640 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AC611_20645 PF00723 Glycosyl hydrolases family 15 AC611_20660 PF05166 YcgL domain AC611_20665 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_20665 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_20675 PF00535 Glycosyl transferase family 2 AC611_20725 PF07977 FabA-like domain AC611_20730 PF01553 Acyltransferase AC611_20740 PF00550 Phosphopantetheine attachment site AC611_20745 PF04820 Tryptophan halogenase AC611_20780 PF01218 Coproporphyrinogen III oxidase AC611_20785 PF01612 3'-5' exonuclease AC611_20785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AC611_20785 PF01367 5'-3' exonuclease, C-terminal SAM fold AC611_20785 PF00476 DNA polymerase family A AC611_20815 PF00069 Protein kinase domain AC611_20845 PF00248 Aldo/keto reductase family AC611_20850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_20850 PF03466 LysR substrate binding domain AC611_20865 PF04717 Type VI secretion system, phage-baseplate injector AC611_20880 PF03793 PASTA domain AC611_20880 PF00069 Protein kinase domain AC611_20890 PF08281 Sigma-70, region 4 AC611_20890 PF04542 Sigma-70 region 2 AC611_20910 PF03372 Endonuclease/Exonuclease/phosphatase family AC611_20920 PF01425 Amidase AC611_20950 PF00872 Transposase, Mutator family AC611_20955 PF05598 Transposase domain (DUF772) AC611_20955 PF01609 Transposase DDE domain AC611_21000 PF05638 Type VI secretion system effector, Hcp AC611_21025 PF14602 Hexapeptide repeat of succinyl-transferase AC611_21025 PF12464 Maltose acetyltransferase AC611_21035 PF00580 UvrD/REP helicase N-terminal domain AC611_21035 PF13361 UvrD-like helicase C-terminal domain AC611_21050 PF13091 PLD-like domain AC611_21050 PF13396 Phospholipase_D-nuclease N-terminal AC611_21055 PF03466 LysR substrate binding domain AC611_21055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_21060 PF03737 Aldolase/RraA AC611_21065 PF04303 PrpF protein AC611_21070 PF04909 Amidohydrolase AC611_21075 PF00471 Ribosomal protein L33 AC611_21080 PF00830 Ribosomal L28 family AC611_21090 PF00873 AcrB/AcrD/AcrF family AC611_21095 PF00873 AcrB/AcrD/AcrF family AC611_21105 PF13533 Biotin-lipoyl like AC611_21125 PF02527 rRNA small subunit methyltransferase G AC611_21130 PF09423 PhoD-like phosphatase AC611_21130 PF16655 PhoD-like phosphatase, N-terminal domain AC611_21135 PF09423 PhoD-like phosphatase AC611_21135 PF16655 PhoD-like phosphatase, N-terminal domain AC611_21140 PF01648 4'-phosphopantetheinyl transferase superfamily AC611_21150 PF04226 Transglycosylase associated protein AC611_21160 PF03372 Endonuclease/Exonuclease/phosphatase family AC611_21165 PF00480 ROK family AC611_21185 PF00474 Sodium:solute symporter family AC611_21190 PF04341 Protein of unknown function, DUF485 AC611_21200 PF13193 AMP-binding enzyme C-terminal domain AC611_21200 PF00501 AMP-binding enzyme AC611_21200 PF16177 Acetyl-coenzyme A synthetase N-terminus AC611_21205 PF00072 Response regulator receiver domain AC611_21205 PF00196 Bacterial regulatory proteins, luxR family AC611_21225 PF04616 Glycosyl hydrolases family 43 AC611_21225 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC611_21235 PF00248 Aldo/keto reductase family AC611_21250 PF01557 Fumarylacetoacetate (FAA) hydrolase family AC611_21255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC611_21255 PF13378 Enolase C-terminal domain-like AC611_21260 PF05336 L-rhamnose mutarotase AC611_21265 PF07690 Major Facilitator Superfamily AC611_21270 PF09339 IclR helix-turn-helix domain AC611_21270 PF01614 Bacterial transcriptional regulator AC611_21275 PF12833 Helix-turn-helix domain AC611_21275 PF02311 AraC-like ligand binding domain AC611_21285 PF02659 Putative manganese efflux pump AC611_21290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_21290 PF00512 His Kinase A (phospho-acceptor) domain AC611_21300 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AC611_21300 PF06165 Glycosyltransferase family 36 AC611_21315 PF13360 PQQ-like domain AC611_21315 PF13570 PQQ-like domain AC611_21315 PF01011 PQQ enzyme repeat AC611_21335 PF04357 TamB, inner membrane protein subunit of TAM complex AC611_21340 PF01103 Surface antigen AC611_21340 PF17243 POTRA domain TamA domain 1 AC611_21345 PF07715 TonB-dependent Receptor Plug Domain AC611_21345 PF00593 TonB dependent receptor AC611_21355 PF13181 Tetratricopeptide repeat AC611_21360 PF05746 DALR anticodon binding domain AC611_21360 PF02092 Glycyl-tRNA synthetase beta subunit AC611_21365 PF02091 Glycyl-tRNA synthetase alpha subunit AC611_21370 PF00437 Type II/IV secretion system protein AC611_21370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AC611_21380 PF00958 GMP synthase C terminal domain AC611_21380 PF00117 Glutamine amidotransferase class-I AC611_21395 PF00902 Sec-independent protein translocase protein (TatC) AC611_21400 PF02416 mttA/Hcf106 family AC611_21405 PF02416 mttA/Hcf106 family AC611_21415 PF00762 Ferrochelatase AC611_21420 PF12697 Alpha/beta hydrolase family AC611_21445 PF04381 Putative exonuclease, RdgC AC611_21450 PF01171 PP-loop family AC611_21460 PF00356 Bacterial regulatory proteins, lacI family AC611_21465 PF03648 Glycosyl hydrolase family 67 N-terminus AC611_21465 PF07477 Glycosyl hydrolase family 67 C-terminus AC611_21465 PF07488 Glycosyl hydrolase family 67 middle domain AC611_21475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AC611_21475 PF13378 Enolase C-terminal domain-like AC611_21480 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AC611_21480 PF04616 Glycosyl hydrolases family 43 AC611_21485 PF01915 Glycosyl hydrolase family 3 C-terminal domain AC611_21485 PF07691 PA14 domain AC611_21485 PF00933 Glycosyl hydrolase family 3 N terminal domain AC611_21485 PF14310 Fibronectin type III-like domain AC611_21490 PF08125 Mannitol dehydrogenase C-terminal domain AC611_21490 PF01232 Mannitol dehydrogenase Rossmann domain AC611_21530 PF00171 Aldehyde dehydrogenase family AC611_21545 PF00202 Aminotransferase class-III AC611_21555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AC611_21555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AC611_21570 PF08450 SMP-30/Gluconolactonase/LRE-like region AC611_21575 PF00331 Glycosyl hydrolase family 10 AC611_21580 PF00703 Glycosyl hydrolases family 2 AC611_21580 PF02837 Glycosyl hydrolases family 2, sugar binding domain AC611_21580 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AC611_21580 PF16355 Domain of unknown function (DUF4982) AC611_21580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AC611_21585 PF02614 Glucuronate isomerase AC611_21590 PF00331 Glycosyl hydrolase family 10 AC611_21590 PF03422 Carbohydrate binding module (family 6) AC611_21590 PF00553 Cellulose binding domain AC611_21600 PF00331 Glycosyl hydrolase family 10 AC611_21600 PF03422 Carbohydrate binding module (family 6) AC611_21600 PF00553 Cellulose binding domain AC611_21620 PF04616 Glycosyl hydrolases family 43 AC611_21680 PF14765 Polyketide synthase dehydratase AC611_21680 PF00550 Phosphopantetheine attachment site AC611_21680 PF08659 KR domain AC611_21680 PF00107 Zinc-binding dehydrogenase AC611_21680 PF16197 Ketoacyl-synthetase C-terminal extension AC611_21680 PF02801 Beta-ketoacyl synthase, C-terminal domain AC611_21680 PF00109 Beta-ketoacyl synthase, N-terminal domain AC611_21680 PF08240 Alcohol dehydrogenase GroES-like domain AC611_21680 PF00698 Acyl transferase domain AC611_21685 PF01553 Acyltransferase AC611_21695 PF00356 Bacterial regulatory proteins, lacI family AC611_21715 PF04820 Tryptophan halogenase AC611_21720 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AC611_21725 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AC611_21730 PF04337 Protein of unknown function, DUF480 AC611_21740 PF04055 Radical SAM superfamily AC611_21740 PF06969 HemN C-terminal domain AC611_21795 PF13361 UvrD-like helicase C-terminal domain AC611_21795 PF00580 UvrD/REP helicase N-terminal domain AC611_21800 PF00265 Thymidine kinase AC611_21805 PF08446 PAS fold AC611_21805 PF01590 GAF domain AC611_21805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AC611_21805 PF00512 His Kinase A (phospho-acceptor) domain AC611_21805 PF00360 Phytochrome region AC611_21810 PF04349 Periplasmic glucan biosynthesis protein, MdoG AC611_21830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AC611_21830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AC611_21830 PF06827 Zinc finger found in FPG and IleRS AC611_21860 PF03594 Benzoate membrane transport protein AC611_21865 PF01590 GAF domain AC611_21865 PF00360 Phytochrome region AC611_21865 PF13426 PAS domain AC611_21865 PF08446 PAS fold AC611_21870 PF01126 Heme oxygenase AC611_21875 PF07690 Major Facilitator Superfamily AC611_21885 PF01263 Aldose 1-epimerase AC611_21895 PF02810 SEC-C motif AC611_21960 PF13396 Phospholipase_D-nuclease N-terminal AC611_21960 PF13091 PLD-like domain AC611_21970 PF00106 short chain dehydrogenase AC611_21975 PF03466 LysR substrate binding domain AC611_21975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_21985 PF00083 Sugar (and other) transporter AC611_21990 PF04632 Fusaric acid resistance protein family AC611_21995 PF02321 Outer membrane efflux protein AC611_22000 PF00529 HlyD membrane-fusion protein of T1SS AC611_22000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AC611_22005 PF07869 Protein of unknown function (DUF1656) AC611_22015 PF01227 GTP cyclohydrolase I AC611_22035 PF00872 Transposase, Mutator family AC611_22045 PF01925 Sulfite exporter TauE/SafE AC611_22060 PF00872 Transposase, Mutator family AC611_22085 PF00849 RNA pseudouridylate synthase AC611_22120 PF06511 Type III secretion systems tip complex components AC611_22160 PF07720 Tetratricopeptide repeat AC611_22165 PF01312 FlhB HrpN YscU SpaS Family AC611_22170 PF01311 Bacterial export proteins, family 1 AC611_22175 PF01313 Bacterial export proteins, family 3 AC611_22180 PF00813 FliP family AC611_22200 PF02874 ATP synthase alpha/beta family, beta-barrel domain AC611_22200 PF18269 T3SS EscN ATPase C-terminal domain AC611_22200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AC611_22210 PF00771 FHIPEP family AC611_22215 PF07201 HrpJ-like domain AC611_22235 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AC611_22315 PF01609 Transposase DDE domain AC611_22315 PF05598 Transposase domain (DUF772) AC611_22355 PF01527 Transposase AC611_22360 PF13333 Integrase core domain AC611_22360 PF00665 Integrase core domain AC611_22360 PF13276 HTH-like domain AC611_22400 PF13683 Integrase core domain AC611_22400 PF13276 HTH-like domain AC611_22405 PF01527 Transposase AC611_22425 PF02785 Biotin carboxylase C-terminal domain AC611_22425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AC611_22425 PF00289 Biotin carboxylase, N-terminal domain AC611_22430 PF01425 Amidase AC611_22485 PF01381 Helix-turn-helix AC611_22495 PF13538 UvrD-like helicase C-terminal domain AC611_22500 PF13361 UvrD-like helicase C-terminal domain AC611_22500 PF00580 UvrD/REP helicase N-terminal domain AC611_22500 PF12705 PD-(D/E)XK nuclease superfamily AC611_22505 PF17946 RecC C-terminal domain AC611_22540 PF00005 ABC transporter AC611_22545 PF02405 Permease MlaE AC611_22550 PF02470 MlaD protein AC611_22555 PF05494 MlaC protein AC611_22565 PF04333 MlaA lipoprotein AC611_22580 PF00255 Glutathione peroxidase AC611_22590 PF02646 RmuC family AC611_22595 PF08240 Alcohol dehydrogenase GroES-like domain AC611_22595 PF00107 Zinc-binding dehydrogenase AC611_22600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AC611_22600 PF03466 LysR substrate binding domain AC611_22625 PF13520 Amino acid permease AC611_22630 PF07971 Glycosyl hydrolase family 92 AC611_22630 PF17678 Glycosyl hydrolase family 92 N-terminal domain AC611_22635 PF10947 Protein of unknown function (DUF2628) AC611_22640 PF00990 Diguanylate cyclase, GGDEF domain AC611_22645 PF13556 PucR C-terminal helix-turn-helix domain AC611_22645 PF05651 Putative sugar diacid recognition AC611_22645 PF17853 GGDEF-like domain AC611_22650 PF02595 Glycerate kinase family AC611_22670 PF17785 PUA-like domain AC611_22670 PF10672 S-adenosylmethionine-dependent methyltransferase AC611_22675 PF03741 Integral membrane protein TerC family AC611_22680 PF01694 Rhomboid family AC611_22685 PF03009 Glycerophosphoryl diester phosphodiesterase family AC611_22695 PF01569 PAP2 superfamily AC611_22700 PF10396 GTP-binding protein TrmE N-terminus AC611_22700 PF01926 50S ribosome-binding GTPase AC611_22700 PF12631 MnmE helical domain AC611_22705 PF01522 Polysaccharide deacetylase AC611_22710 PF14849 YidC periplasmic domain AC611_22710 PF02096 60Kd inner membrane protein AC611_22715 PF00825 Ribonuclease P AC611_22720 PF00468 Ribosomal protein L34 AC611_22760 PF12950 TaqI-like C-terminal specificity domain AC611_22760 PF07669 Eco57I restriction-modification methylase AC611_22765 PF17728 BsuBI/PstI restriction endonuclease HTH domain AC611_22765 PF06616 BsuBI/PstI restriction endonuclease domain AC611_22835 PF00872 Transposase, Mutator family AC611_22885 PF02796 Helix-turn-helix domain of resolvase AC611_22885 PF00239 Resolvase, N terminal domain AC611_22895 PF01850 PIN domain AC611_22910 PF01131 DNA topoisomerase AC611_22910 PF01751 Toprim domain AC611_22910 PF13368 Topoisomerase C-terminal repeat AC611_22910 PF01396 Topoisomerase DNA binding C4 zinc finger AC611_22945 PF03743 Bacterial conjugation TrbI-like protein AC611_22960 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AC611_22970 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AC611_22980 PF00437 Type II/IV secretion system protein AC611_23015 PF02534 Type IV secretory system Conjugative DNA transfer AC611_23085 PF06067 Domain of unknown function (DUF932) AC611_23110 PF18495 Antitoxin VbhA AC611_23120 PF00872 Transposase, Mutator family AC611_23125 PF05598 Transposase domain (DUF772) AC611_23125 PF01609 Transposase DDE domain AC611_23195 PF00872 Transposase, Mutator family AC611_23215 PF01555 DNA methylase AC611_23220 PF09571 XcyI restriction endonuclease AC611_23250 PF01850 PIN domain AC611_23260 PF00239 Resolvase, N terminal domain AC611_23260 PF02796 Helix-turn-helix domain of resolvase AC611_23290 PF11740 Plasmid replication region DNA-binding N-term AC611_23315 PF03377 TAL effector repeat AC611_23350 PF00156 Phosphoribosyl transferase domain