locus-tag class description M0D48_00030 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M0D48_00030 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M0D48_00030 PF06827 Zinc finger found in FPG and IleRS M0D48_00040 PF04349 Periplasmic glucan biosynthesis protein, MdoG M0D48_00045 PF01590 GAF domain M0D48_00045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_00045 PF00512 His Kinase A (phospho-acceptor) domain M0D48_00045 PF08446 PAS fold M0D48_00045 PF00360 Phytochrome region M0D48_00050 PF00265 Thymidine kinase M0D48_00055 PF13361 UvrD-like helicase C-terminal domain M0D48_00055 PF00580 UvrD/REP helicase N-terminal domain M0D48_00070 PF04337 Protein of unknown function, DUF480 M0D48_00075 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M0D48_00080 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M0D48_00085 PF04820 Tryptophan halogenase M0D48_00100 PF00356 Bacterial regulatory proteins, lacI family M0D48_00110 PF01553 Acyltransferase M0D48_00115 PF00109 Beta-ketoacyl synthase, N-terminal domain M0D48_00115 PF14765 Polyketide synthase dehydratase M0D48_00115 PF00550 Phosphopantetheine attachment site M0D48_00115 PF08659 KR domain M0D48_00115 PF16197 Ketoacyl-synthetase C-terminal extension M0D48_00115 PF02801 Beta-ketoacyl synthase, C-terminal domain M0D48_00115 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_00115 PF00698 Acyl transferase domain M0D48_00115 PF00107 Zinc-binding dehydrogenase M0D48_00160 PF04616 Glycosyl hydrolases family 43 M0D48_00180 PF00553 Cellulose binding domain M0D48_00180 PF03422 Carbohydrate binding module (family 6) M0D48_00180 PF00331 Glycosyl hydrolase family 10 M0D48_00200 PF02614 Glucuronate isomerase M0D48_00205 PF02837 Glycosyl hydrolases family 2, sugar binding domain M0D48_00205 PF00703 Glycosyl hydrolases family 2 M0D48_00205 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M0D48_00205 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M0D48_00205 PF16355 Domain of unknown function (DUF4982) M0D48_00215 PF00331 Glycosyl hydrolase family 10 M0D48_00220 PF08450 SMP-30/Gluconolactonase/LRE-like region M0D48_00245 PF08125 Mannitol dehydrogenase C-terminal domain M0D48_00245 PF01232 Mannitol dehydrogenase Rossmann domain M0D48_00250 PF07691 PA14 domain M0D48_00250 PF01915 Glycosyl hydrolase family 3 C-terminal domain M0D48_00250 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_00250 PF14310 Fibronectin type III-like domain M0D48_00255 PF04616 Glycosyl hydrolases family 43 M0D48_00255 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain M0D48_00260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M0D48_00260 PF13378 Enolase C-terminal domain-like M0D48_00270 PF03648 Glycosyl hydrolase family 67 N-terminus M0D48_00270 PF07488 Glycosyl hydrolase family 67 middle domain M0D48_00270 PF07477 Glycosyl hydrolase family 67 C-terminus M0D48_00275 PF00356 Bacterial regulatory proteins, lacI family M0D48_00285 PF01171 PP-loop family M0D48_00290 PF04381 Putative exonuclease, RdgC M0D48_00300 PF12697 Alpha/beta hydrolase family M0D48_00305 PF00762 Ferrochelatase M0D48_00315 PF02416 mttA/Hcf106 family M0D48_00320 PF02416 mttA/Hcf106 family M0D48_00325 PF00902 Sec-independent protein translocase protein (TatC) M0D48_00335 PF00117 Glutamine amidotransferase class-I M0D48_00335 PF00958 GMP synthase C terminal domain M0D48_00345 PF00437 Type II/IV secretion system protein M0D48_00345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M0D48_00350 PF02091 Glycyl-tRNA synthetase alpha subunit M0D48_00355 PF02092 Glycyl-tRNA synthetase beta subunit M0D48_00355 PF05746 DALR anticodon binding domain M0D48_00360 PF13181 Tetratricopeptide repeat M0D48_00365 PF07715 TonB-dependent Receptor Plug Domain M0D48_00365 PF00593 TonB dependent receptor M0D48_00370 PF01103 Surface antigen M0D48_00370 PF17243 POTRA domain TamA domain 1 M0D48_00375 PF04357 TamB, inner membrane protein subunit of TAM complex M0D48_00395 PF01011 PQQ enzyme repeat M0D48_00395 PF13570 PQQ-like domain M0D48_00395 PF13360 PQQ-like domain M0D48_00410 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M0D48_00410 PF06165 Glycosyltransferase family 36 M0D48_00420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_00420 PF00512 His Kinase A (phospho-acceptor) domain M0D48_00425 PF02659 Putative manganese efflux pump M0D48_00440 PF09339 IclR helix-turn-helix domain M0D48_00440 PF01614 Bacterial transcriptional regulator M0D48_00445 PF07690 Major Facilitator Superfamily M0D48_00450 PF05336 L-rhamnose mutarotase M0D48_00455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M0D48_00455 PF13378 Enolase C-terminal domain-like M0D48_00460 PF01557 Fumarylacetoacetate (FAA) hydrolase family M0D48_00475 PF00248 Aldo/keto reductase family M0D48_00500 PF00196 Bacterial regulatory proteins, luxR family M0D48_00500 PF00072 Response regulator receiver domain M0D48_00505 PF16177 Acetyl-coenzyme A synthetase N-terminus M0D48_00505 PF00501 AMP-binding enzyme M0D48_00505 PF13193 AMP-binding enzyme C-terminal domain M0D48_00515 PF04341 Protein of unknown function, DUF485 M0D48_00520 PF00474 Sodium:solute symporter family M0D48_00525 PF00480 ROK family M0D48_00540 PF04226 Transglycosylase associated protein M0D48_00545 PF01648 4'-phosphopantetheinyl transferase superfamily M0D48_00550 PF09423 PhoD-like phosphatase M0D48_00550 PF16655 PhoD-like phosphatase, N-terminal domain M0D48_00555 PF16655 PhoD-like phosphatase, N-terminal domain M0D48_00555 PF09423 PhoD-like phosphatase M0D48_00560 PF02527 rRNA small subunit methyltransferase G M0D48_00580 PF13533 Biotin-lipoyl like M0D48_00590 PF00873 AcrB/AcrD/AcrF family M0D48_00595 PF00830 Ribosomal L28 family M0D48_00600 PF00471 Ribosomal protein L33 M0D48_00605 PF04909 Amidohydrolase M0D48_00610 PF04303 PrpF protein M0D48_00615 PF03737 Aldolase/RraA M0D48_00620 PF03466 LysR substrate binding domain M0D48_00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_00625 PF13091 PLD-like domain M0D48_00625 PF13396 Phospholipase_D-nuclease N-terminal M0D48_00640 PF00580 UvrD/REP helicase N-terminal domain M0D48_00640 PF13361 UvrD-like helicase C-terminal domain M0D48_00650 PF12464 Maltose acetyltransferase M0D48_00650 PF14602 Hexapeptide repeat of succinyl-transferase M0D48_00695 PF00328 Histidine phosphatase superfamily (branch 2) M0D48_00710 PF08281 Sigma-70, region 4 M0D48_00710 PF04542 Sigma-70 region 2 M0D48_00720 PF03793 PASTA domain M0D48_00720 PF00069 Protein kinase domain M0D48_00730 PF00476 DNA polymerase family A M0D48_00730 PF01367 5'-3' exonuclease, C-terminal SAM fold M0D48_00730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M0D48_00730 PF01612 3'-5' exonuclease M0D48_00740 PF01218 Coproporphyrinogen III oxidase M0D48_00755 PF00326 Prolyl oligopeptidase family M0D48_00755 PF07676 WD40-like Beta Propeller Repeat M0D48_00770 PF01494 FAD binding domain M0D48_00775 PF00550 Phosphopantetheine attachment site M0D48_00785 PF01553 Acyltransferase M0D48_00835 PF00535 Glycosyl transferase family 2 M0D48_00845 PF02801 Beta-ketoacyl synthase, C-terminal domain M0D48_00845 PF00109 Beta-ketoacyl synthase, N-terminal domain M0D48_00850 PF05166 YcgL domain M0D48_00865 PF00723 Glycosyl hydrolases family 15 M0D48_00870 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M0D48_00870 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M0D48_00895 PF02254 TrkA-N domain M0D48_00895 PF00999 Sodium/hydrogen exchanger family M0D48_00900 PF00571 CBS domain M0D48_00900 PF01769 Divalent cation transporter M0D48_00900 PF03448 MgtE intracellular N domain M0D48_00910 PF00583 Acetyltransferase (GNAT) family M0D48_00910 PF13380 CoA binding domain M0D48_00910 PF13607 Succinyl-CoA ligase like flavodoxin domain M0D48_00920 PF03477 ATP cone domain M0D48_00920 PF02867 Ribonucleotide reductase, barrel domain M0D48_00920 PF00317 Ribonucleotide reductase, all-alpha domain M0D48_00925 PF00268 Ribonucleotide reductase, small chain M0D48_00955 PF03061 Thioesterase superfamily M0D48_00970 PF02558 Ketopantoate reductase PanE/ApbA M0D48_00970 PF08546 Ketopantoate reductase PanE/ApbA C terminal M0D48_00975 PF01061 ABC-2 type transporter M0D48_00980 PF00005 ABC transporter M0D48_00985 PF01383 CpcD/allophycocyanin linker domain M0D48_00985 PF00175 Oxidoreductase NAD-binding domain M0D48_00990 PF01545 Cation efflux family M0D48_00995 PF02583 Metal-sensitive transcriptional repressor M0D48_01005 PF01381 Helix-turn-helix M0D48_01015 PF00005 ABC transporter M0D48_01030 PF04820 Tryptophan halogenase M0D48_01050 PF00043 Glutathione S-transferase, C-terminal domain M0D48_01050 PF02798 Glutathione S-transferase, N-terminal domain M0D48_01055 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region M0D48_01055 PF00326 Prolyl oligopeptidase family M0D48_01080 PF00490 Delta-aminolevulinic acid dehydratase M0D48_01130 PF08501 Shikimate dehydrogenase substrate binding domain M0D48_01130 PF01488 Shikimate / quinate 5-dehydrogenase M0D48_01130 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M0D48_01145 PF13307 Helicase C-terminal domain M0D48_01145 PF06733 DEAD_2 M0D48_01150 PF06628 Catalase-related immune-responsive M0D48_01150 PF00199 Catalase M0D48_01180 PF01207 Dihydrouridine synthase (Dus) M0D48_01190 PF00072 Response regulator receiver domain M0D48_01190 PF00486 Transcriptional regulatory protein, C terminal M0D48_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_01210 PF06167 Glucose-regulated metallo-peptidase M90 M0D48_01220 PF02237 Biotin protein ligase C terminal domain M0D48_01220 PF03099 Biotin/lipoate A/B protein ligase family M0D48_01220 PF08279 HTH domain M0D48_01225 PF03309 Type III pantothenate kinase M0D48_01240 PF02223 Thymidylate kinase M0D48_01265 PF00491 Arginase family M0D48_01280 PF05532 CsbD-like M0D48_01285 PF00579 tRNA synthetases class I (W and Y) M0D48_01310 PF00892 EamA-like transporter family M0D48_01315 PF00892 EamA-like transporter family M0D48_01335 PF00005 ABC transporter M0D48_01340 PF13533 Biotin-lipoyl like M0D48_01345 PF07730 Histidine kinase M0D48_01350 PF00196 Bacterial regulatory proteins, luxR family M0D48_01350 PF00072 Response regulator receiver domain M0D48_01365 PF00199 Catalase M0D48_01370 PF00883 Cytosol aminopeptidase family, catalytic domain M0D48_01370 PF02789 Cytosol aminopeptidase family, N-terminal domain M0D48_01375 PF13419 Haloacid dehalogenase-like hydrolase M0D48_01380 PF01594 AI-2E family transporter M0D48_01400 PF00595 PDZ domain M0D48_01410 PF01370 NAD dependent epimerase/dehydratase family M0D48_01410 PF08338 Domain of unknown function (DUF1731) M0D48_01445 PF01139 tRNA-splicing ligase RtcB M0D48_01460 PF00440 Bacterial regulatory proteins, tetR family M0D48_01465 PF00175 Oxidoreductase NAD-binding domain M0D48_01465 PF00111 2Fe-2S iron-sulfur cluster binding domain M0D48_01465 PF00970 Oxidoreductase FAD-binding domain M0D48_01470 PF00487 Fatty acid desaturase M0D48_01475 PF00563 EAL domain M0D48_01475 PF12792 CSS motif domain associated with EAL M0D48_01490 PF13335 Magnesium chelatase, subunit ChlI C-terminal M0D48_01490 PF01078 Magnesium chelatase, subunit ChlI M0D48_01495 PF04380 Membrane fusogenic activity M0D48_01500 PF00543 Nitrogen regulatory protein P-II M0D48_01505 PF00754 F5/8 type C domain M0D48_01505 PF00041 Fibronectin type III domain M0D48_01505 PF02838 Glycosyl hydrolase family 20, domain 2 M0D48_01505 PF07555 beta-N-acetylglucosaminidase M0D48_01505 PF00963 Cohesin domain M0D48_01525 PF17284 Spermidine synthase tetramerisation domain M0D48_01530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M0D48_01530 PF17944 Arginine decarboxylase C-terminal helical extension M0D48_01530 PF17810 Arginine decarboxylase helical bundle domain M0D48_01540 PF00550 Phosphopantetheine attachment site M0D48_01540 PF00975 Thioesterase domain M0D48_01540 PF00668 Condensation domain M0D48_01540 PF13193 AMP-binding enzyme C-terminal domain M0D48_01540 PF00501 AMP-binding enzyme M0D48_01545 PF03033 Glycosyltransferase family 28 N-terminal domain M0D48_01550 PF01757 Acyltransferase family M0D48_01555 PF00106 short chain dehydrogenase M0D48_01570 PF05746 DALR anticodon binding domain M0D48_01570 PF03485 Arginyl tRNA synthetase N terminal domain M0D48_01570 PF00750 tRNA synthetases class I (R) M0D48_01575 PF04002 RadC-like JAB domain M0D48_01580 PF02441 Flavoprotein M0D48_01580 PF04127 DNA / pantothenate metabolism flavoprotein M0D48_01585 PF00692 dUTPase M0D48_01590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M0D48_01590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M0D48_01590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M0D48_01590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M0D48_01605 PF00535 Glycosyl transferase family 2 M0D48_01610 PF01370 NAD dependent epimerase/dehydratase family M0D48_01620 PF17762 HTH domain found in ParB protein M0D48_01620 PF02195 ParB-like nuclease domain M0D48_01625 PF13614 AAA domain M0D48_01635 PF00156 Phosphoribosyl transferase domain M0D48_01640 PF03372 Endonuclease/Exonuclease/phosphatase family M0D48_01645 PF07690 Major Facilitator Superfamily M0D48_01655 PF03702 Anhydro-N-acetylmuramic acid kinase M0D48_01660 PF04225 Opacity-associated protein A LysM-like domain M0D48_01660 PF01551 Peptidase family M23 M0D48_01665 PF00579 tRNA synthetases class I (W and Y) M0D48_01695 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M0D48_01695 PF14850 DNA-binding domain of Proline dehydrogenase M0D48_01695 PF00171 Aldehyde dehydrogenase family M0D48_01695 PF01619 Proline dehydrogenase M0D48_01705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M0D48_01705 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M0D48_01710 PF00115 Cytochrome C and Quinol oxidase polypeptide I M0D48_01720 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 M0D48_01725 PF00510 Cytochrome c oxidase subunit III M0D48_01750 PF01040 UbiA prenyltransferase family M0D48_01760 PF13593 SBF-like CPA transporter family (DUF4137) M0D48_01770 PF08278 DNA primase DnaG DnaB-binding M0D48_01770 PF10410 DnaB-helicase binding domain of primase M0D48_01770 PF08275 DNA primase catalytic core, N-terminal domain M0D48_01770 PF01807 CHC2 zinc finger M0D48_01775 PF03631 Virulence factor BrkB M0D48_01785 PF09424 Yqey-like protein M0D48_01790 PF01165 Ribosomal protein S21 M0D48_01795 PF00814 Glycoprotease family M0D48_01800 PF02152 Dihydroneopterin aldolase M0D48_01805 PF14310 Fibronectin type III-like domain M0D48_01805 PF01915 Glycosyl hydrolase family 3 C-terminal domain M0D48_01805 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_01810 PF07995 Glucose / Sorbosone dehydrogenase M0D48_01815 PF05360 yiaA/B two helix domain M0D48_01830 PF13520 Amino acid permease M0D48_01840 PF13378 Enolase C-terminal domain-like M0D48_01840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M0D48_01850 PF01510 N-acetylmuramoyl-L-alanine amidase M0D48_01855 PF01427 D-ala-D-ala dipeptidase M0D48_01890 PF07063 Domain of unknown function (DUF1338) M0D48_01910 PF00873 AcrB/AcrD/AcrF family M0D48_01915 PF00873 AcrB/AcrD/AcrF family M0D48_01920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_01925 PF01546 Peptidase family M20/M25/M40 M0D48_01925 PF07687 Peptidase dimerisation domain M0D48_01930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M0D48_01930 PF14489 QueF-like protein M0D48_01935 PF01476 LysM domain M0D48_01935 PF04972 BON domain M0D48_01945 PF03971 Monomeric isocitrate dehydrogenase M0D48_01955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_01955 PF03466 LysR substrate binding domain M0D48_01960 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M0D48_01970 PF07497 Rho termination factor, RNA-binding domain M0D48_01970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M0D48_01970 PF07498 Rho termination factor, N-terminal domain M0D48_01975 PF00085 Thioredoxin M0D48_01980 PF00270 DEAD/DEAH box helicase M0D48_01980 PF00271 Helicase conserved C-terminal domain M0D48_01980 PF12300 ATP-dependent RNA helicase RhlB M0D48_01985 PF00005 ABC transporter M0D48_01990 PF18075 FtsX extracellular domain M0D48_01995 PF00072 Response regulator receiver domain M0D48_01995 PF01339 CheB methylesterase M0D48_02000 PF03167 Uracil DNA glycosylase superfamily M0D48_02005 PF04545 Sigma-70, region 4 M0D48_02005 PF04542 Sigma-70 region 2 M0D48_02010 PF03458 UPF0126 domain M0D48_02015 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_02030 PF13417 Glutathione S-transferase, N-terminal domain M0D48_02030 PF00043 Glutathione S-transferase, C-terminal domain M0D48_02035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M0D48_02035 PF18074 Primosomal protein N C-terminal domain M0D48_02035 PF17764 3′ DNA-binding domain (3′BD) M0D48_02035 PF00271 Helicase conserved C-terminal domain M0D48_02035 PF00270 DEAD/DEAH box helicase M0D48_02055 PF01554 MatE M0D48_02060 PF01343 Peptidase family S49 M0D48_02085 PF01300 Telomere recombination M0D48_02090 PF01131 DNA topoisomerase M0D48_02090 PF01751 Toprim domain M0D48_02090 PF13368 Topoisomerase C-terminal repeat M0D48_02100 PF00114 Pilin (bacterial filament) M0D48_02100 PF07963 Prokaryotic N-terminal methylation motif M0D48_02105 PF04361 Protein of unknown function (DUF494) M0D48_02110 PF17782 DprA winged helix domain M0D48_02110 PF02481 DNA recombination-mediator protein A M0D48_02115 PF01476 LysM domain M0D48_02120 PF01327 Polypeptide deformylase M0D48_02125 PF02911 Formyl transferase, C-terminal domain M0D48_02125 PF00551 Formyl transferase M0D48_02130 PF01189 16S rRNA methyltransferase RsmB/F M0D48_02130 PF01029 NusB family M0D48_02145 PF00535 Glycosyl transferase family 2 M0D48_02165 PF00925 GTP cyclohydrolase II M0D48_02175 PF03279 Bacterial lipid A biosynthesis acyltransferase M0D48_02180 PF02580 D-Tyr-tRNA(Tyr) deacylase M0D48_02185 PF04546 Sigma-70, non-essential region M0D48_02185 PF00140 Sigma-70 factor, region 1.2 M0D48_02185 PF03979 Sigma-70 factor, region 1.1 M0D48_02185 PF04542 Sigma-70 region 2 M0D48_02185 PF04539 Sigma-70 region 3 M0D48_02185 PF04545 Sigma-70, region 4 M0D48_02200 PF13356 Arm DNA-binding domain M0D48_02200 PF00589 Phage integrase family M0D48_02205 PF08463 EcoEI R protein C-terminal M0D48_02205 PF00271 Helicase conserved C-terminal domain M0D48_02205 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) M0D48_02205 PF04851 Type III restriction enzyme, res subunit M0D48_02215 PF13166 AAA domain M0D48_02275 PF04002 RadC-like JAB domain M0D48_02385 PF02630 SCO1/SenC M0D48_02400 PF00557 Metallopeptidase family M24 M0D48_02410 PF00654 Voltage gated chloride channel M0D48_02445 PF01042 Endoribonuclease L-PSP M0D48_02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_02450 PF03466 LysR substrate binding domain M0D48_02460 PF00005 ABC transporter M0D48_02475 PF07715 TonB-dependent Receptor Plug Domain M0D48_02475 PF00593 TonB dependent receptor M0D48_02520 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_02520 PF13823 Alcohol dehydrogenase GroES-associated M0D48_02520 PF00107 Zinc-binding dehydrogenase M0D48_02545 PF02322 Cytochrome bd terminal oxidase subunit II M0D48_02550 PF01654 Cytochrome bd terminal oxidase subunit I M0D48_02555 PF00158 Sigma-54 interaction domain M0D48_02555 PF00072 Response regulator receiver domain M0D48_02555 PF02954 Bacterial regulatory protein, Fis family M0D48_02565 PF05067 Manganese containing catalase M0D48_02570 PF05974 Domain of unknown function (DUF892) M0D48_02585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_02585 PF02743 Cache domain M0D48_02585 PF00672 HAMP domain M0D48_02585 PF06580 Histidine kinase M0D48_02590 PF04397 LytTr DNA-binding domain M0D48_02590 PF00072 Response regulator receiver domain M0D48_02600 PF13520 Amino acid permease M0D48_02615 PF01431 Peptidase family M13 M0D48_02615 PF05649 Peptidase family M13 M0D48_02625 PF00248 Aldo/keto reductase family M0D48_02630 PF03358 NADPH-dependent FMN reductase M0D48_02635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_02635 PF03466 LysR substrate binding domain M0D48_02645 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M0D48_02655 PF03167 Uracil DNA glycosylase superfamily M0D48_02660 PF02469 Fasciclin domain M0D48_02670 PF00999 Sodium/hydrogen exchanger family M0D48_02675 PF00005 ABC transporter M0D48_02680 PF01061 ABC-2 type transporter M0D48_02705 PF09286 Pro-kumamolisin, activation domain M0D48_02705 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_02715 PF07504 Fungalysin/Thermolysin Propeptide Motif M0D48_02715 PF03413 Peptidase propeptide and YPEB domain M0D48_02715 PF02868 Thermolysin metallopeptidase, alpha-helical domain M0D48_02715 PF01447 Thermolysin metallopeptidase, catalytic domain M0D48_02715 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_02725 PF13018 Extended Signal Peptide of Type V secretion system M0D48_02725 PF05658 Head domain of trimeric autotransporter adhesin M0D48_02725 PF05662 Coiled stalk of trimeric autotransporter adhesin M0D48_02725 PF03895 YadA-like membrane anchor domain M0D48_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_02730 PF00512 His Kinase A (phospho-acceptor) domain M0D48_02730 PF08448 PAS fold M0D48_02730 PF13188 PAS domain M0D48_02730 PF00072 Response regulator receiver domain M0D48_02735 PF00072 Response regulator receiver domain M0D48_02735 PF00486 Transcriptional regulatory protein, C terminal M0D48_02750 PF13677 Membrane MotB of proton-channel complex MotA/MotB M0D48_02750 PF00691 OmpA family M0D48_02755 PF01618 MotA/TolQ/ExbB proton channel family M0D48_02765 PF01641 SelR domain M0D48_02775 PF01037 Lrp/AsnC ligand binding domain M0D48_02780 PF01266 FAD dependent oxidoreductase M0D48_02785 PF01168 Alanine racemase, N-terminal domain M0D48_02785 PF00842 Alanine racemase, C-terminal domain M0D48_02805 PF00989 PAS fold M0D48_02805 PF00512 His Kinase A (phospho-acceptor) domain M0D48_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_02815 PF07995 Glucose / Sorbosone dehydrogenase M0D48_02825 PF08468 Methyltransferase small domain N-terminal M0D48_02825 PF05175 Methyltransferase small domain M0D48_02830 PF00849 RNA pseudouridylate synthase M0D48_02830 PF01479 S4 domain M0D48_02835 PF13419 Haloacid dehalogenase-like hydrolase M0D48_02855 PF00072 Response regulator receiver domain M0D48_02855 PF01627 Hpt domain M0D48_02855 PF00512 His Kinase A (phospho-acceptor) domain M0D48_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_02855 PF00672 HAMP domain M0D48_02855 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_02865 PF04461 Protein of unknown function (DUF520) M0D48_02870 PF00892 EamA-like transporter family M0D48_02875 PF00005 ABC transporter M0D48_02875 PF09383 NIL domain M0D48_02880 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_02885 PF03180 NLPA lipoprotein M0D48_02920 PF02817 e3 binding domain M0D48_02920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M0D48_02920 PF00364 Biotin-requiring enzyme M0D48_02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_02930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M0D48_02955 PF00119 ATP synthase A chain M0D48_02960 PF00137 ATP synthase subunit C M0D48_02965 PF00430 ATP synthase B/B' CF(0) M0D48_02970 PF00213 ATP synthase delta (OSCP) subunit M0D48_02975 PF00306 ATP synthase alpha/beta chain, C terminal domain M0D48_02975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M0D48_02975 PF02874 ATP synthase alpha/beta family, beta-barrel domain M0D48_02980 PF00231 ATP synthase M0D48_02985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M0D48_02985 PF02874 ATP synthase alpha/beta family, beta-barrel domain M0D48_02990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M0D48_03005 PF14602 Hexapeptide repeat of succinyl-transferase M0D48_03005 PF12804 MobA-like NTP transferase domain M0D48_03005 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_03015 PF00672 HAMP domain M0D48_03015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_03015 PF00512 His Kinase A (phospho-acceptor) domain M0D48_03020 PF02954 Bacterial regulatory protein, Fis family M0D48_03020 PF00072 Response regulator receiver domain M0D48_03020 PF00158 Sigma-54 interaction domain M0D48_03025 PF02687 FtsX-like permease family M0D48_03025 PF12704 MacB-like periplasmic core domain M0D48_03025 PF00005 ABC transporter M0D48_03030 PF00005 ABC transporter M0D48_03030 PF02687 FtsX-like permease family M0D48_03030 PF12704 MacB-like periplasmic core domain M0D48_03035 PF00005 ABC transporter M0D48_03035 PF12704 MacB-like periplasmic core domain M0D48_03035 PF02687 FtsX-like permease family M0D48_03040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_03045 PF01380 SIS domain M0D48_03070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M0D48_03075 PF05275 Copper resistance protein B precursor (CopB) M0D48_03080 PF00394 Multicopper oxidase M0D48_03080 PF07732 Multicopper oxidase M0D48_03080 PF07731 Multicopper oxidase M0D48_03105 PF00109 Beta-ketoacyl synthase, N-terminal domain M0D48_03105 PF02801 Beta-ketoacyl synthase, C-terminal domain M0D48_03110 PF07977 FabA-like domain M0D48_03120 PF00817 impB/mucB/samB family M0D48_03120 PF11799 impB/mucB/samB family C-terminal domain M0D48_03125 PF13419 Haloacid dehalogenase-like hydrolase M0D48_03135 PF13185 GAF domain M0D48_03150 PF01242 6-pyruvoyl tetrahydropterin synthase M0D48_03155 PF00270 DEAD/DEAH box helicase M0D48_03155 PF00271 Helicase conserved C-terminal domain M0D48_03165 PF14497 Glutathione S-transferase, C-terminal domain M0D48_03165 PF02798 Glutathione S-transferase, N-terminal domain M0D48_03170 PF00437 Type II/IV secretion system protein M0D48_03190 PF00571 CBS domain M0D48_03190 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_03195 PF01053 Cys/Met metabolism PLP-dependent enzyme M0D48_03205 PF00005 ABC transporter M0D48_03210 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_03215 PF00535 Glycosyl transferase family 2 M0D48_03220 PF14307 Glycosyltransferase WbsX M0D48_03220 PF05045 Rhamnan synthesis protein F M0D48_03230 PF01209 ubiE/COQ5 methyltransferase family M0D48_03245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M0D48_03245 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_03250 PF01370 NAD dependent epimerase/dehydratase family M0D48_03260 PF00106 short chain dehydrogenase M0D48_03265 PF04030 D-arabinono-1,4-lactone oxidase M0D48_03265 PF01565 FAD binding domain M0D48_03270 PF01040 UbiA prenyltransferase family M0D48_03280 PF01012 Electron transfer flavoprotein domain M0D48_03280 PF00766 Electron transfer flavoprotein FAD-binding domain M0D48_03285 PF01012 Electron transfer flavoprotein domain M0D48_03290 PF16363 GDP-mannose 4,6 dehydratase M0D48_03295 PF00483 Nucleotidyl transferase M0D48_03300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M0D48_03305 PF04321 RmlD substrate binding domain M0D48_03310 PF01050 Mannose-6-phosphate isomerase M0D48_03310 PF00483 Nucleotidyl transferase M0D48_03315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M0D48_03315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M0D48_03315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M0D48_03315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M0D48_03320 PF01144 Coenzyme A transferase M0D48_03325 PF01144 Coenzyme A transferase M0D48_03330 PF14307 Glycosyltransferase WbsX M0D48_03330 PF05045 Rhamnan synthesis protein F M0D48_03350 PF03886 ABC-type transport auxiliary lipoprotein component M0D48_03350 PF02470 MlaD protein M0D48_03355 PF00005 ABC transporter M0D48_03360 PF02405 Permease MlaE M0D48_03370 PF00816 H-NS histone family M0D48_03375 PF03129 Anticodon binding domain M0D48_03375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M0D48_03375 PF04073 Aminoacyl-tRNA editing domain M0D48_03385 PF01066 CDP-alcohol phosphatidyltransferase M0D48_03400 PF00544 Pectate lyase M0D48_03405 PF00732 GMC oxidoreductase M0D48_03405 PF05199 GMC oxidoreductase M0D48_03410 PF00171 Aldehyde dehydrogenase family M0D48_03415 PF02028 BCCT, betaine/carnitine/choline family transporter M0D48_03425 PF01323 DSBA-like thioredoxin domain M0D48_03435 PF00034 Cytochrome c M0D48_03440 PF01926 50S ribosome-binding GTPase M0D48_03445 PF04107 Glutamate-cysteine ligase family 2(GCS2) M0D48_03450 PF00672 HAMP domain M0D48_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_03450 PF00512 His Kinase A (phospho-acceptor) domain M0D48_03455 PF00072 Response regulator receiver domain M0D48_03455 PF00486 Transcriptional regulatory protein, C terminal M0D48_03465 PF02583 Metal-sensitive transcriptional repressor M0D48_03470 PF00107 Zinc-binding dehydrogenase M0D48_03470 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_03475 PF04828 Glutathione-dependent formaldehyde-activating enzyme M0D48_03480 PF00756 Putative esterase M0D48_03500 PF00155 Aminotransferase class I and II M0D48_03500 PF00392 Bacterial regulatory proteins, gntR family M0D48_03505 PF00892 EamA-like transporter family M0D48_03515 PF02645 Uncharacterised protein, DegV family COG1307 M0D48_03550 PF01979 Amidohydrolase family M0D48_03555 PF01979 Amidohydrolase family M0D48_03570 PF00462 Glutaredoxin M0D48_03575 PF01522 Polysaccharide deacetylase M0D48_03590 PF00155 Aminotransferase class I and II M0D48_03595 PF03193 RsgA GTPase M0D48_03615 PF00128 Alpha amylase, catalytic domain M0D48_03630 PF00356 Bacterial regulatory proteins, lacI family M0D48_03635 PF00106 short chain dehydrogenase M0D48_03640 PF03600 Citrate transporter M0D48_03650 PF00072 Response regulator receiver domain M0D48_03650 PF00486 Transcriptional regulatory protein, C terminal M0D48_03655 PF00512 His Kinase A (phospho-acceptor) domain M0D48_03655 PF08521 Two-component sensor kinase N-terminal M0D48_03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_03665 PF00196 Bacterial regulatory proteins, luxR family M0D48_03665 PF00072 Response regulator receiver domain M0D48_03685 PF00248 Aldo/keto reductase family M0D48_03690 PF03466 LysR substrate binding domain M0D48_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_03700 PF07690 Major Facilitator Superfamily M0D48_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_03705 PF00512 His Kinase A (phospho-acceptor) domain M0D48_03720 PF00375 Sodium:dicarboxylate symporter family M0D48_03725 PF03949 Malic enzyme, NAD binding domain M0D48_03725 PF01515 Phosphate acetyl/butaryl transferase M0D48_03725 PF00390 Malic enzyme, N-terminal domain M0D48_03800 PF00390 Malic enzyme, N-terminal domain M0D48_03800 PF03949 Malic enzyme, NAD binding domain M0D48_03800 PF01515 Phosphate acetyl/butaryl transferase M0D48_03840 PF13333 Integrase core domain M0D48_03840 PF00665 Integrase core domain M0D48_03840 PF13276 HTH-like domain M0D48_03845 PF01527 Transposase M0D48_03875 PF00005 ABC transporter M0D48_03875 PF03412 Peptidase C39 family M0D48_03875 PF00664 ABC transporter transmembrane region M0D48_03900 PF03279 Bacterial lipid A biosynthesis acyltransferase M0D48_03905 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M0D48_03910 PF02321 Outer membrane efflux protein M0D48_03925 PF00990 Diguanylate cyclase, GGDEF domain M0D48_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_03935 PF00330 Aconitase family (aconitate hydratase) M0D48_03940 PF00694 Aconitase C-terminal domain M0D48_03950 PF00180 Isocitrate/isopropylmalate dehydrogenase M0D48_03955 PF00682 HMGL-like M0D48_03955 PF08502 LeuA allosteric (dimerisation) domain M0D48_03960 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_03970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M0D48_03970 PF00205 Thiamine pyrophosphate enzyme, central domain M0D48_03970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M0D48_03975 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M0D48_03975 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M0D48_03985 PF00672 HAMP domain M0D48_03985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_03990 PF00326 Prolyl oligopeptidase family M0D48_03990 PF07676 WD40-like Beta Propeller Repeat M0D48_03995 PF01964 Radical SAM ThiC family M0D48_03995 PF13667 ThiC-associated domain M0D48_04000 PF18500 CadC C-terminal domain 1 M0D48_04000 PF00486 Transcriptional regulatory protein, C terminal M0D48_04005 PF12833 Helix-turn-helix domain M0D48_04010 PF07715 TonB-dependent Receptor Plug Domain M0D48_04010 PF00593 TonB dependent receptor M0D48_04020 PF00719 Inorganic pyrophosphatase M0D48_04030 PF03030 Inorganic H+ pyrophosphatase M0D48_04055 PF04610 TrbL/VirB6 plasmid conjugal transfer protein M0D48_04075 PF04610 TrbL/VirB6 plasmid conjugal transfer protein M0D48_04085 PF00365 Phosphofructokinase M0D48_04095 PF08245 Mur ligase middle domain M0D48_04095 PF02875 Mur ligase family, glutamate ligase domain M0D48_04095 PF01225 Mur ligase family, catalytic domain M0D48_04105 PF01062 Bestrophin, RFP-TM, chloride channel M0D48_04110 PF01569 PAP2 superfamily M0D48_04135 PF00202 Aminotransferase class-III M0D48_04150 PF01593 Flavin containing amine oxidoreductase M0D48_04155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M0D48_04155 PF00034 Cytochrome c M0D48_04165 PF00155 Aminotransferase class I and II M0D48_04170 PF00127 Copper binding proteins, plastocyanin/azurin family M0D48_04180 PF00196 Bacterial regulatory proteins, luxR family M0D48_04180 PF17874 MalT-like TPR region M0D48_04185 PF00202 Aminotransferase class-III M0D48_04200 PF02581 Thiamine monophosphate synthase M0D48_04205 PF00301 Rubredoxin M0D48_04210 PF13369 Transglutaminase-like superfamily M0D48_04220 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M0D48_04230 PF01812 5-formyltetrahydrofolate cyclo-ligase family M0D48_04240 PF05164 Cell division protein ZapA M0D48_04250 PF03695 Uncharacterised protein family (UPF0149) M0D48_04255 PF00557 Metallopeptidase family M24 M0D48_04255 PF05195 Aminopeptidase P, N-terminal domain M0D48_04265 PF00557 Metallopeptidase family M24 M0D48_04280 PF04055 Radical SAM superfamily M0D48_04280 PF06969 HemN C-terminal domain M0D48_04285 PF01725 Ham1 family M0D48_04295 PF03725 3' exoribonuclease family, domain 2 M0D48_04295 PF01138 3' exoribonuclease family, domain 1 M0D48_04300 PF08340 Domain of unknown function (DUF1732) M0D48_04300 PF03755 YicC-like family, N-terminal region M0D48_04305 PF00625 Guanylate kinase M0D48_04310 PF01192 RNA polymerase Rpb6 M0D48_04325 PF00005 ABC transporter M0D48_04325 PF08402 TOBE domain M0D48_04330 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_04335 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_04340 PF04966 Carbohydrate-selective porin, OprB family M0D48_04350 PF04198 Putative sugar-binding domain M0D48_04355 PF13419 Haloacid dehalogenase-like hydrolase M0D48_04360 PF13291 ACT domain M0D48_04360 PF04607 Region found in RelA / SpoT proteins M0D48_04360 PF02824 TGS domain M0D48_04365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_04365 PF03466 LysR substrate binding domain M0D48_04370 PF00701 Dihydrodipicolinate synthetase family M0D48_04375 PF00171 Aldehyde dehydrogenase family M0D48_04380 PF07690 Major Facilitator Superfamily M0D48_04385 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M0D48_04385 PF13378 Enolase C-terminal domain-like M0D48_04390 PF03573 outer membrane porin, OprD family M0D48_04395 PF08666 SAF domain M0D48_04395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus M0D48_04400 PF01042 Endoribonuclease L-PSP M0D48_04405 PF00270 DEAD/DEAH box helicase M0D48_04405 PF00271 Helicase conserved C-terminal domain M0D48_04405 PF17191 RecG wedge domain M0D48_04410 PF01156 Inosine-uridine preferring nucleoside hydrolase M0D48_04415 PF01197 Ribosomal protein L31 M0D48_04420 PF00285 Citrate synthase, C-terminal domain M0D48_04435 PF17092 Penicillin-binding protein OB-like domain M0D48_04435 PF00905 Penicillin binding protein transpeptidase domain M0D48_04435 PF00912 Transglycosylase M0D48_04440 PF11104 Type IV pilus assembly protein PilM; M0D48_04445 PF05137 Fimbrial assembly protein (PilN) M0D48_04450 PF04350 Pilus assembly protein, PilO M0D48_04455 PF04351 Pilus assembly protein, PilP M0D48_04460 PF07660 Secretin and TonB N terminus short domain M0D48_04460 PF03958 Bacterial type II/III secretion system short domain M0D48_04460 PF00263 Bacterial type II and III secretion system protein M0D48_04460 PF11741 AMIN domain M0D48_04465 PF07726 ATPase family associated with various cellular activities (AAA) M0D48_04465 PF17863 AAA lid domain M0D48_04485 PF00092 von Willebrand factor type A domain M0D48_04485 PF07584 Aerotolerance regulator N-terminal M0D48_04495 PF00375 Sodium:dicarboxylate symporter family M0D48_04500 PF02780 Transketolase, C-terminal domain M0D48_04500 PF02779 Transketolase, pyrimidine binding domain M0D48_04500 PF00456 Transketolase, thiamine diphosphate binding domain M0D48_04505 PF07715 TonB-dependent Receptor Plug Domain M0D48_04505 PF00593 TonB dependent receptor M0D48_04510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_04510 PF03466 LysR substrate binding domain M0D48_04520 PF01551 Peptidase family M23 M0D48_04520 PF04225 Opacity-associated protein A LysM-like domain M0D48_04525 PF01476 LysM domain M0D48_04525 PF03734 L,D-transpeptidase catalytic domain M0D48_04550 PF00501 AMP-binding enzyme M0D48_04570 PF00486 Transcriptional regulatory protein, C terminal M0D48_04570 PF00072 Response regulator receiver domain M0D48_04575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_04575 PF08521 Two-component sensor kinase N-terminal M0D48_04575 PF00512 His Kinase A (phospho-acceptor) domain M0D48_04595 PF00005 ABC transporter M0D48_04595 PF03459 TOBE domain M0D48_04600 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_04610 PF00753 Metallo-beta-lactamase superfamily M0D48_04610 PF04273 Putative phosphatase (DUF442) M0D48_04620 PF03922 OmpW family M0D48_04630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M0D48_04630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M0D48_04650 PF00162 Phosphoglycerate kinase M0D48_04655 PF13419 Haloacid dehalogenase-like hydrolase M0D48_04660 PF00224 Pyruvate kinase, barrel domain M0D48_04660 PF02887 Pyruvate kinase, alpha/beta domain M0D48_04665 PF00274 Fructose-bisphosphate aldolase class-I M0D48_04670 PF01661 Macro domain M0D48_04685 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_04690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M0D48_04690 PF14824 Sirohaem biosynthesis protein central M0D48_04690 PF10414 Sirohaem synthase dimerisation region M0D48_04695 PF03466 LysR substrate binding domain M0D48_04695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_04705 PF00512 His Kinase A (phospho-acceptor) domain M0D48_04705 PF01627 Hpt domain M0D48_04705 PF00072 Response regulator receiver domain M0D48_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_04705 PF00672 HAMP domain M0D48_04725 PF01507 Phosphoadenosine phosphosulfate reductase family M0D48_04730 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M0D48_04730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M0D48_04735 PF00175 Oxidoreductase NAD-binding domain M0D48_04735 PF00258 Flavodoxin M0D48_04735 PF00667 FAD binding domain M0D48_04740 PF01507 Phosphoadenosine phosphosulfate reductase family M0D48_04745 PF00009 Elongation factor Tu GTP binding domain M0D48_04750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_04750 PF00529 HlyD membrane-fusion protein of T1SS M0D48_04755 PF00873 AcrB/AcrD/AcrF family M0D48_04770 PF11838 ERAP1-like C-terminal domain M0D48_04770 PF01433 Peptidase family M1 domain M0D48_04780 PF00588 SpoU rRNA Methylase family M0D48_04780 PF08032 RNA 2'-O ribose methyltransferase substrate binding M0D48_04785 PF00135 Carboxylesterase family M0D48_04790 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation M0D48_04790 PF14508 Glycosyl-hydrolase 97 N-terminal M0D48_04790 PF10566 Glycoside hydrolase 97 M0D48_04795 PF00703 Glycosyl hydrolases family 2 M0D48_04795 PF16355 Domain of unknown function (DUF4982) M0D48_04795 PF13287 Fn3 associated M0D48_04795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M0D48_04795 PF02837 Glycosyl hydrolases family 2, sugar binding domain M0D48_04815 PF00356 Bacterial regulatory proteins, lacI family M0D48_04825 PF01741 Large-conductance mechanosensitive channel, MscL M0D48_04830 PF01557 Fumarylacetoacetate (FAA) hydrolase family M0D48_04845 PF02080 TrkA-C domain M0D48_04845 PF03600 Citrate transporter M0D48_04850 PF02390 Putative methyltransferase M0D48_04855 PF05690 Thiazole biosynthesis protein ThiG M0D48_04865 PF03797 Autotransporter beta-domain M0D48_04865 PF00657 GDSL-like Lipase/Acylhydrolase M0D48_04895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M0D48_04895 PF00128 Alpha amylase, catalytic domain M0D48_04900 PF08443 RimK-like ATP-grasp domain M0D48_04900 PF18030 RimK PreATP-grasp domain M0D48_04910 PF00486 Transcriptional regulatory protein, C terminal M0D48_04910 PF00072 Response regulator receiver domain M0D48_04915 PF00512 His Kinase A (phospho-acceptor) domain M0D48_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_04915 PF11808 Phosphate regulon sensor protein PhoR M0D48_04915 PF00989 PAS fold M0D48_04965 PF01121 Dephospho-CoA kinase M0D48_04970 PF06750 Bacterial Peptidase A24 N-terminal domain M0D48_04970 PF01478 Type IV leader peptidase family M0D48_04975 PF00482 Type II secretion system (T2SS), protein F M0D48_04980 PF00114 Pilin (bacterial filament) M0D48_04980 PF07963 Prokaryotic N-terminal methylation motif M0D48_04985 PF08019 Phosphoethanolamine transferase EptA/EptB M0D48_04985 PF00884 Sulfatase M0D48_05005 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M0D48_05005 PF00437 Type II/IV secretion system protein M0D48_05010 PF00158 Sigma-54 interaction domain M0D48_05010 PF02954 Bacterial regulatory protein, Fis family M0D48_05010 PF00072 Response regulator receiver domain M0D48_05015 PF00512 His Kinase A (phospho-acceptor) domain M0D48_05015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_05020 PF00549 CoA-ligase M0D48_05020 PF08442 ATP-grasp domain M0D48_05025 PF00549 CoA-ligase M0D48_05025 PF02629 CoA binding domain M0D48_05035 PF00795 Carbon-nitrogen hydrolase M0D48_05035 PF02540 NAD synthase M0D48_05040 PF01230 HIT domain M0D48_05045 PF13525 Outer membrane lipoprotein M0D48_05050 PF00849 RNA pseudouridylate synthase M0D48_05055 PF02578 Multi-copper polyphenol oxidoreductase laccase M0D48_05065 PF04134 Protein of unknown function, DUF393 M0D48_05070 PF00672 HAMP domain M0D48_05070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_05070 PF02203 Tar ligand binding domain homologue M0D48_05075 PF01011 PQQ enzyme repeat M0D48_05080 PF00982 Glycosyltransferase family 20 M0D48_05085 PF00723 Glycosyl hydrolases family 15 M0D48_05090 PF02358 Trehalose-phosphatase M0D48_05095 PF07715 TonB-dependent Receptor Plug Domain M0D48_05095 PF00593 TonB dependent receptor M0D48_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_05110 PF03466 LysR substrate binding domain M0D48_05135 PF01541 GIY-YIG catalytic domain M0D48_05140 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_05140 PF07724 AAA domain (Cdc48 subfamily) M0D48_05140 PF02861 Clp amino terminal domain, pathogenicity island component M0D48_05140 PF17871 AAA lid domain M0D48_05140 PF10431 C-terminal, D2-small domain, of ClpB protein M0D48_05155 PF00664 ABC transporter transmembrane region M0D48_05155 PF00005 ABC transporter M0D48_05155 PF03412 Peptidase C39 family M0D48_05175 PF07715 TonB-dependent Receptor Plug Domain M0D48_05175 PF00593 TonB dependent receptor M0D48_05195 PF12557 Cob(I)alamin adenosyltransferase N terminal M0D48_05195 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M0D48_05200 PF17113 Regulatory signalling modulator protein AmpE M0D48_05200 PF03186 CobD/Cbib protein M0D48_05205 PF00155 Aminotransferase class I and II M0D48_05210 PF07685 CobB/CobQ-like glutamine amidotransferase domain M0D48_05210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M0D48_05215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M0D48_05220 PF02277 Phosphoribosyltransferase M0D48_05230 PF02654 Cobalamin-5-phosphate synthase M0D48_05250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M0D48_05250 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M0D48_05255 PF06276 Ferric iron reductase FhuF-like transporter M0D48_05255 PF04183 IucA / IucC family M0D48_05260 PF07690 Major Facilitator Superfamily M0D48_05265 PF06276 Ferric iron reductase FhuF-like transporter M0D48_05265 PF04183 IucA / IucC family M0D48_05275 PF07715 TonB-dependent Receptor Plug Domain M0D48_05275 PF07660 Secretin and TonB N terminus short domain M0D48_05275 PF00593 TonB dependent receptor M0D48_05280 PF03328 HpcH/HpaI aldolase/citrate lyase family M0D48_05300 PF02254 TrkA-N domain M0D48_05300 PF00999 Sodium/hydrogen exchanger family M0D48_05310 PF07715 TonB-dependent Receptor Plug Domain M0D48_05310 PF00593 TonB dependent receptor M0D48_05315 PF00593 TonB dependent receptor M0D48_05315 PF07715 TonB-dependent Receptor Plug Domain M0D48_05330 PF07715 TonB-dependent Receptor Plug Domain M0D48_05330 PF00593 TonB dependent receptor M0D48_05335 PF00005 ABC transporter M0D48_05335 PF12848 ABC transporter M0D48_05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_05345 PF03466 LysR substrate binding domain M0D48_05365 PF04185 Phosphoesterase family M0D48_05365 PF05506 Domain of unknown function (DUF756) M0D48_05375 PF07690 Major Facilitator Superfamily M0D48_05390 PF02938 GAD domain M0D48_05390 PF00152 tRNA synthetases class II (D, K and N) M0D48_05390 PF01336 OB-fold nucleic acid binding domain M0D48_05405 PF01709 Transcriptional regulator M0D48_05410 PF02075 Crossover junction endodeoxyribonuclease RuvC M0D48_05415 PF01330 RuvA N terminal domain M0D48_05415 PF07499 RuvA, C-terminal domain M0D48_05420 PF02705 K+ potassium transporter M0D48_05430 PF17864 RuvB AAA lid domain M0D48_05430 PF05491 RuvB C-terminal winged helix domain M0D48_05430 PF05496 Holliday junction DNA helicase RuvB P-loop domain M0D48_05435 PF03061 Thioesterase superfamily M0D48_05440 PF01618 MotA/TolQ/ExbB proton channel family M0D48_05445 PF02472 Biopolymer transport protein ExbD/TolR M0D48_05455 PF07676 WD40-like Beta Propeller Repeat M0D48_05455 PF04052 TolB amino-terminal domain M0D48_05460 PF00691 OmpA family M0D48_05470 PF04055 Radical SAM superfamily M0D48_05480 PF06508 Queuosine biosynthesis protein QueC M0D48_05495 PF03466 LysR substrate binding domain M0D48_05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_05500 PF01810 LysE type translocator M0D48_05510 PF00672 HAMP domain M0D48_05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_05510 PF02203 Tar ligand binding domain homologue M0D48_05520 PF00849 RNA pseudouridylate synthase M0D48_05520 PF01479 S4 domain M0D48_05540 PF00270 DEAD/DEAH box helicase M0D48_05540 PF00271 Helicase conserved C-terminal domain M0D48_05540 PF00570 HRDC domain M0D48_05540 PF16124 RecQ zinc-binding M0D48_05540 PF09382 RQC domain M0D48_05545 PF00210 Ferritin-like domain M0D48_05550 PF00270 DEAD/DEAH box helicase M0D48_05550 PF11898 Domain of unknown function (DUF3418) M0D48_05550 PF04408 Helicase associated domain (HA2) M0D48_05550 PF00271 Helicase conserved C-terminal domain M0D48_05550 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M0D48_05580 PF04055 Radical SAM superfamily M0D48_05580 PF13186 Iron-sulfur cluster-binding domain M0D48_05585 PF05402 Coenzyme PQQ synthesis protein D (PqqD) M0D48_05590 PF03070 TENA/THI-4/PQQC family M0D48_05595 PF12706 Beta-lactamase superfamily domain M0D48_05600 PF08042 PqqA family M0D48_05605 PF13291 ACT domain M0D48_05605 PF04607 Region found in RelA / SpoT proteins M0D48_05605 PF02824 TGS domain M0D48_05615 PF00535 Glycosyl transferase family 2 M0D48_05620 PF00912 Transglycosylase M0D48_05620 PF00905 Penicillin binding protein transpeptidase domain M0D48_05620 PF14814 Bifunctional transglycosylase second domain M0D48_05630 PF04851 Type III restriction enzyme, res subunit M0D48_05630 PF13307 Helicase C-terminal domain M0D48_05635 PF00814 Glycoprotease family M0D48_05640 PF03747 ADP-ribosylglycohydrolase M0D48_05650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M0D48_05650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M0D48_05655 PF00072 Response regulator receiver domain M0D48_05660 PF00072 Response regulator receiver domain M0D48_05665 PF01584 CheW-like domain M0D48_05670 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M0D48_05670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_05675 PF01584 CheW-like domain M0D48_05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_05675 PF01627 Hpt domain M0D48_05675 PF02895 Signal transducing histidine kinase, homodimeric domain M0D48_05675 PF00072 Response regulator receiver domain M0D48_05690 PF13302 Acetyltransferase (GNAT) domain M0D48_05700 PF08281 Sigma-70, region 4 M0D48_05700 PF04542 Sigma-70 region 2 M0D48_05705 PF12450 von Willebrand factor M0D48_05705 PF00092 von Willebrand factor type A domain M0D48_05705 PF12034 Domain of unknown function (DUF3520) M0D48_05710 PF01112 Asparaginase M0D48_05715 PF03932 CutC family M0D48_05745 PF01301 Glycosyl hydrolases family 35 M0D48_05750 PF07971 Glycosyl hydrolase family 92 M0D48_05750 PF17678 Glycosyl hydrolase family 92 N-terminal domain M0D48_05760 PF02056 Family 4 glycosyl hydrolase M0D48_05760 PF11975 Family 4 glycosyl hydrolase C-terminal domain M0D48_05770 PF13520 Amino acid permease M0D48_05775 PF01301 Glycosyl hydrolases family 35 M0D48_05785 PF14310 Fibronectin type III-like domain M0D48_05785 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_05785 PF01915 Glycosyl hydrolase family 3 C-terminal domain M0D48_05785 PF07691 PA14 domain M0D48_05795 PF00728 Glycosyl hydrolase family 20, catalytic domain M0D48_05795 PF07691 PA14 domain M0D48_05795 PF02838 Glycosyl hydrolase family 20, domain 2 M0D48_05805 PF01476 LysM domain M0D48_05805 PF00704 Glycosyl hydrolases family 18 M0D48_05820 PF02685 Glucokinase M0D48_05825 PF04452 RNA methyltransferase M0D48_05830 PF00202 Aminotransferase class-III M0D48_05835 PF00293 NUDIX domain M0D48_05840 PF00459 Inositol monophosphatase family M0D48_05845 PF03819 MazG nucleotide pyrophosphohydrolase domain M0D48_05850 PF02694 Uncharacterised BCR, YnfA/UPF0060 family M0D48_05855 PF01145 SPFH domain / Band 7 family M0D48_05855 PF16200 C-terminal region of band_7 M0D48_05865 PF01571 Aminomethyltransferase folate-binding domain M0D48_05865 PF08669 Glycine cleavage T-protein C-terminal barrel domain M0D48_05870 PF01597 Glycine cleavage H-protein M0D48_05895 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_05895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_05895 PF09317 Domain of unknown function (DUF1974) M0D48_05895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_05900 PF00561 alpha/beta hydrolase fold M0D48_05905 PF00440 Bacterial regulatory proteins, tetR family M0D48_05910 PF07715 TonB-dependent Receptor Plug Domain M0D48_05910 PF00593 TonB dependent receptor M0D48_05920 PF01430 Hsp33 protein M0D48_05925 PF00912 Transglycosylase M0D48_05930 PF00535 Glycosyl transferase family 2 M0D48_05935 PF00571 CBS domain M0D48_05935 PF00478 IMP dehydrogenase / GMP reductase domain M0D48_05940 PF05170 AsmA family M0D48_05945 PF03006 Haemolysin-III related M0D48_05950 PF00009 Elongation factor Tu GTP binding domain M0D48_05950 PF16658 Class II release factor RF3, C-terminal domain M0D48_05955 PF01551 Peptidase family M23 M0D48_05955 PF01476 LysM domain M0D48_05955 PF08525 Opacity-associated protein A N-terminal motif M0D48_05960 PF00561 alpha/beta hydrolase fold M0D48_05965 PF01053 Cys/Met metabolism PLP-dependent enzyme M0D48_05970 PF00742 Homoserine dehydrogenase M0D48_05970 PF00696 Amino acid kinase family M0D48_05970 PF03447 Homoserine dehydrogenase, NAD binding domain M0D48_05975 PF12697 Alpha/beta hydrolase family M0D48_05980 PF03313 Serine dehydratase alpha chain M0D48_05980 PF03315 Serine dehydratase beta chain M0D48_06000 PF04264 YceI-like domain M0D48_06005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06005 PF01627 Hpt domain M0D48_06005 PF00072 Response regulator receiver domain M0D48_06005 PF00512 His Kinase A (phospho-acceptor) domain M0D48_06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06010 PF00512 His Kinase A (phospho-acceptor) domain M0D48_06010 PF09308 LuxQ, periplasmic M0D48_06010 PF00072 Response regulator receiver domain M0D48_06015 PF00512 His Kinase A (phospho-acceptor) domain M0D48_06015 PF09456 RcsC Alpha-Beta-Loop (ABL) M0D48_06015 PF00072 Response regulator receiver domain M0D48_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06020 PF17149 Periplasmic sensor domain found in signal transduction proteins M0D48_06020 PF00672 HAMP domain M0D48_06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06020 PF00512 His Kinase A (phospho-acceptor) domain M0D48_06020 PF01627 Hpt domain M0D48_06020 PF00072 Response regulator receiver domain M0D48_06025 PF07690 Major Facilitator Superfamily M0D48_06030 PF02954 Bacterial regulatory protein, Fis family M0D48_06030 PF00072 Response regulator receiver domain M0D48_06030 PF00158 Sigma-54 interaction domain M0D48_06100 PF01208 Uroporphyrinogen decarboxylase (URO-D) M0D48_06110 PF01761 3-dehydroquinate synthase M0D48_06115 PF01202 Shikimate kinase M0D48_06120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M0D48_06120 PF01243 Pyridoxamine 5'-phosphate oxidase M0D48_06130 PF04012 PspA/IM30 family M0D48_06155 PF03738 Glutathionylspermidine synthase preATP-grasp M0D48_06160 PF07690 Major Facilitator Superfamily M0D48_06165 PF00376 MerR family regulatory protein M0D48_06165 PF09278 MerR, DNA binding M0D48_06195 PF04820 Tryptophan halogenase M0D48_06200 PF12706 Beta-lactamase superfamily domain M0D48_06220 PF00324 Amino acid permease M0D48_06230 PF00561 alpha/beta hydrolase fold M0D48_06235 PF00544 Pectate lyase M0D48_06240 PF00324 Amino acid permease M0D48_06250 PF01654 Cytochrome bd terminal oxidase subunit I M0D48_06255 PF02322 Cytochrome bd terminal oxidase subunit II M0D48_06260 PF00756 Putative esterase M0D48_06265 PF01769 Divalent cation transporter M0D48_06265 PF00571 CBS domain M0D48_06265 PF03448 MgtE intracellular N domain M0D48_06270 PF05524 PEP-utilising enzyme, N-terminal M0D48_06270 PF00391 PEP-utilising enzyme, mobile domain M0D48_06270 PF02896 PEP-utilising enzyme, TIM barrel domain M0D48_06275 PF00381 PTS HPr component phosphorylation site M0D48_06285 PF03668 P-loop ATPase protein family M0D48_06290 PF07475 HPr Serine kinase C-terminal domain M0D48_06290 PF02603 HPr Serine kinase N terminus M0D48_06295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M0D48_06300 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M0D48_06305 PF00309 Sigma-54 factor, Activator interacting domain (AID) M0D48_06305 PF04963 Sigma-54 factor, core binding domain M0D48_06305 PF04552 Sigma-54, DNA binding domain M0D48_06310 PF00005 ABC transporter M0D48_06330 PF01380 SIS domain M0D48_06330 PF00571 CBS domain M0D48_06335 PF01722 BolA-like protein M0D48_06340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M0D48_06360 PF00551 Formyl transferase M0D48_06370 PF02769 AIR synthase related protein, C-terminal domain M0D48_06370 PF00586 AIR synthase related protein, N-terminal domain M0D48_06380 PF01594 AI-2E family transporter M0D48_06385 PF00308 Bacterial dnaA protein M0D48_06395 PF00483 Nucleotidyl transferase M0D48_06400 PF01636 Phosphotransferase enzyme family M0D48_06410 PF07687 Peptidase dimerisation domain M0D48_06410 PF01546 Peptidase family M20/M25/M40 M0D48_06425 PF00175 Oxidoreductase NAD-binding domain M0D48_06425 PF00667 FAD binding domain M0D48_06425 PF00258 Flavodoxin M0D48_06430 PF02424 ApbE family M0D48_06455 PF18331 PKHD-type hydroxylase C-terminal domain M0D48_06455 PF13640 2OG-Fe(II) oxygenase superfamily M0D48_06460 PF00593 TonB dependent receptor M0D48_06460 PF07715 TonB-dependent Receptor Plug Domain M0D48_06465 PF00355 Rieske [2Fe-2S] domain M0D48_06475 PF00266 Aminotransferase class-V M0D48_06480 PF01458 Uncharacterized protein family (UPF0051) M0D48_06485 PF00005 ABC transporter M0D48_06490 PF01458 Uncharacterized protein family (UPF0051) M0D48_06495 PF02082 Transcriptional regulator M0D48_06505 PF01965 DJ-1/PfpI family M0D48_06525 PF01476 LysM domain M0D48_06525 PF01551 Peptidase family M23 M0D48_06540 PF03807 NADP oxidoreductase coenzyme F420-dependent M0D48_06540 PF14748 Pyrroline-5-carboxylate reductase dimerisation M0D48_06545 PF01168 Alanine racemase, N-terminal domain M0D48_06550 PF00437 Type II/IV secretion system protein M0D48_06555 PF00437 Type II/IV secretion system protein M0D48_06570 PF00958 GMP synthase C terminal domain M0D48_06570 PF00117 Glutamine amidotransferase class-I M0D48_06570 PF03352 Methyladenine glycosylase M0D48_06570 PF13302 Acetyltransferase (GNAT) domain M0D48_06570 PF13673 Acetyltransferase (GNAT) domain M0D48_06575 PF13687 Domain of unknown function (DUF4153) M0D48_06580 PF02622 Uncharacterized ACR, COG1678 M0D48_06585 PF03652 Holliday junction resolvase M0D48_06590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M0D48_06590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M0D48_06595 PF02566 OsmC-like protein M0D48_06605 PF02567 Phenazine biosynthesis-like protein M0D48_06615 PF00696 Amino acid kinase family M0D48_06615 PF01842 ACT domain M0D48_06630 PF08245 Mur ligase middle domain M0D48_06640 PF00348 Polyprenyl synthetase M0D48_06645 PF00436 Single-strand binding protein family M0D48_06660 PF00732 GMC oxidoreductase M0D48_06660 PF05199 GMC oxidoreductase M0D48_06690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M0D48_06690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M0D48_06695 PF03825 Nucleoside H+ symporter M0D48_06705 PF00356 Bacterial regulatory proteins, lacI family M0D48_06710 PF00563 EAL domain M0D48_06710 PF00990 Diguanylate cyclase, GGDEF domain M0D48_06710 PF00360 Phytochrome region M0D48_06710 PF01590 GAF domain M0D48_06715 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_06715 PF00107 Zinc-binding dehydrogenase M0D48_06720 PF00111 2Fe-2S iron-sulfur cluster binding domain M0D48_06720 PF01799 [2Fe-2S] binding domain M0D48_06720 PF10518 TAT (twin-arginine translocation) pathway signal sequence M0D48_06725 PF00941 FAD binding domain in molybdopterin dehydrogenase M0D48_06725 PF03450 CO dehydrogenase flavoprotein C-terminal domain M0D48_06730 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M0D48_06730 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M0D48_06735 PF02625 XdhC and CoxI family M0D48_06735 PF13478 XdhC Rossmann domain M0D48_06770 PF04328 Selenoprotein, putative M0D48_06775 PF13722 5TM C-terminal transporter carbon starvation CstA M0D48_06775 PF02554 Carbon starvation protein CstA M0D48_06780 PF02678 Pirin M0D48_06780 PF05726 Pirin C-terminal cupin domain M0D48_06795 PF02678 Pirin M0D48_06795 PF05726 Pirin C-terminal cupin domain M0D48_06800 PF04493 Endonuclease V M0D48_06805 PF00300 Histidine phosphatase superfamily (branch 1) M0D48_06815 PF01431 Peptidase family M13 M0D48_06815 PF05649 Peptidase family M13 M0D48_06820 PF13091 PLD-like domain M0D48_06825 PF01339 CheB methylesterase M0D48_06825 PF00072 Response regulator receiver domain M0D48_06830 PF03705 CheR methyltransferase, all-alpha domain M0D48_06830 PF01739 CheR methyltransferase, SAM binding domain M0D48_06835 PF13426 PAS domain M0D48_06835 PF00990 Diguanylate cyclase, GGDEF domain M0D48_06835 PF00563 EAL domain M0D48_06840 PF01584 CheW-like domain M0D48_06845 PF00672 HAMP domain M0D48_06845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_06850 PF02895 Signal transducing histidine kinase, homodimeric domain M0D48_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06850 PF09078 CheY binding M0D48_06850 PF01627 Hpt domain M0D48_06850 PF01584 CheW-like domain M0D48_06855 PF01740 STAS domain M0D48_06860 PF02559 CarD-like/TRCF domain M0D48_06860 PF00270 DEAD/DEAH box helicase M0D48_06860 PF00271 Helicase conserved C-terminal domain M0D48_06860 PF03461 TRCF domain M0D48_06860 PF17757 UvrB interaction domain M0D48_06870 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M0D48_06875 PF00072 Response regulator receiver domain M0D48_06875 PF00486 Transcriptional regulatory protein, C terminal M0D48_06885 PF00672 HAMP domain M0D48_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_06885 PF00512 His Kinase A (phospho-acceptor) domain M0D48_06895 PF06123 Inner membrane protein CreD M0D48_06910 PF00795 Carbon-nitrogen hydrolase M0D48_06920 PF00749 tRNA synthetases class I (E and Q), catalytic domain M0D48_06925 PF01475 Ferric uptake regulator family M0D48_06935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_06935 PF00529 HlyD membrane-fusion protein of T1SS M0D48_06940 PF00873 AcrB/AcrD/AcrF family M0D48_06945 PF02321 Outer membrane efflux protein M0D48_06950 PF00440 Bacterial regulatory proteins, tetR family M0D48_06950 PF16859 Tetracyclin repressor-like, C-terminal domain M0D48_06960 PF12833 Helix-turn-helix domain M0D48_06960 PF06719 AraC-type transcriptional regulator N-terminus M0D48_06975 PF03466 LysR substrate binding domain M0D48_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_06980 PF07690 Major Facilitator Superfamily M0D48_06985 PF00248 Aldo/keto reductase family M0D48_06995 PF01483 Proprotein convertase P-domain M0D48_06995 PF00082 Subtilase family M0D48_07005 PF07715 TonB-dependent Receptor Plug Domain M0D48_07005 PF00593 TonB dependent receptor M0D48_07020 PF00654 Voltage gated chloride channel M0D48_07030 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M0D48_07030 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M0D48_07075 PF04542 Sigma-70 region 2 M0D48_07075 PF04539 Sigma-70 region 3 M0D48_07075 PF04545 Sigma-70, region 4 M0D48_07080 PF03880 DbpA RNA binding domain M0D48_07080 PF00271 Helicase conserved C-terminal domain M0D48_07080 PF00270 DEAD/DEAH box helicase M0D48_07085 PF00990 Diguanylate cyclase, GGDEF domain M0D48_07085 PF00563 EAL domain M0D48_07085 PF08448 PAS fold M0D48_07090 PF00849 RNA pseudouridylate synthase M0D48_07090 PF01479 S4 domain M0D48_07095 PF00990 Diguanylate cyclase, GGDEF domain M0D48_07115 PF03737 Aldolase/RraA M0D48_07120 PF00144 Beta-lactamase M0D48_07120 PF07930 D-aminopeptidase, domain B M0D48_07125 PF00999 Sodium/hydrogen exchanger family M0D48_07130 PF00512 His Kinase A (phospho-acceptor) domain M0D48_07130 PF00672 HAMP domain M0D48_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_07135 PF00072 Response regulator receiver domain M0D48_07135 PF00486 Transcriptional regulatory protein, C terminal M0D48_07140 PF02321 Outer membrane efflux protein M0D48_07145 PF06629 MltA-interacting protein MipA M0D48_07155 PF00873 AcrB/AcrD/AcrF family M0D48_07165 PF00664 ABC transporter transmembrane region M0D48_07165 PF00005 ABC transporter M0D48_07195 PF01022 Bacterial regulatory protein, arsR family M0D48_07200 PF03466 LysR substrate binding domain M0D48_07200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_07250 PF00085 Thioredoxin M0D48_07260 PF13603 Leucyl-tRNA synthetase, Domain 2 M0D48_07260 PF00133 tRNA synthetases class I (I, L, M and V) M0D48_07260 PF08264 Anticodon-binding domain of tRNA M0D48_07275 PF01467 Cytidylyltransferase-like M0D48_07290 PF02590 Predicted SPOUT methyltransferase M0D48_07310 PF04402 Protein of unknown function (DUF541) M0D48_07315 PF02545 Maf-like protein M0D48_07320 PF00575 S1 RNA binding domain M0D48_07320 PF10150 Ribonuclease E/G family M0D48_07325 PF13502 AsmA-like C-terminal region M0D48_07325 PF13116 Protein of unknown function M0D48_07335 PF01523 Putative modulator of DNA gyrase M0D48_07340 PF04751 Protein of unknown function (DUF615) M0D48_07345 PF01523 Putative modulator of DNA gyrase M0D48_07355 PF14521 Lysine-specific metallo-endopeptidase M0D48_07360 PF00348 Polyprenyl synthetase M0D48_07365 PF02609 Exonuclease VII small subunit M0D48_07370 PF01171 PP-loop family M0D48_07370 PF09179 TilS substrate binding domain M0D48_07370 PF11734 TilS substrate C-terminal domain M0D48_07375 PF00245 Alkaline phosphatase M0D48_07380 PF00375 Sodium:dicarboxylate symporter family M0D48_07385 PF08241 Methyltransferase domain M0D48_07400 PF00877 NlpC/P60 family M0D48_07405 PF00877 NlpC/P60 family M0D48_07410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M0D48_07415 PF04235 Protein of unknown function (DUF418) M0D48_07420 PF01266 FAD dependent oxidoreductase M0D48_07425 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_07425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M0D48_07445 PF05649 Peptidase family M13 M0D48_07445 PF01431 Peptidase family M13 M0D48_07450 PF05649 Peptidase family M13 M0D48_07450 PF01431 Peptidase family M13 M0D48_07470 PF10609 NUBPL iron-transfer P-loop NTPase M0D48_07475 PF00692 dUTPase M0D48_07500 PF01738 Dienelactone hydrolase family M0D48_07505 PF04055 Radical SAM superfamily M0D48_07505 PF18693 TRAM domain M0D48_07505 PF00919 Uncharacterized protein family UPF0004 M0D48_07510 PF01272 Transcription elongation factor, GreA/GreB, C-term M0D48_07510 PF03449 Transcription elongation factor, N-terminal M0D48_07525 PF00293 NUDIX domain M0D48_07535 PF05872 Bacterial protein of unknown function (DUF853) M0D48_07545 PF02666 Phosphatidylserine decarboxylase M0D48_07550 PF02630 SCO1/SenC M0D48_07555 PF05175 Methyltransferase small domain M0D48_07560 PF01264 Chorismate synthase M0D48_07565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M0D48_07565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M0D48_07570 PF01118 Semialdehyde dehydrogenase, NAD binding domain M0D48_07570 PF02774 Semialdehyde dehydrogenase, dimerisation domain M0D48_07590 PF01416 tRNA pseudouridine synthase M0D48_07595 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M0D48_07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_07605 PF03466 LysR substrate binding domain M0D48_07610 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_07620 PF00290 Tryptophan synthase alpha chain M0D48_07625 PF01039 Carboxyl transferase domain M0D48_07625 PF17848 Acetyl-coA carboxylase zinc finger domain M0D48_07630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M0D48_07630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M0D48_07630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M0D48_07630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M0D48_07645 PF03707 Bacterial signalling protein N terminal repeat M0D48_07645 PF00563 EAL domain M0D48_07645 PF00990 Diguanylate cyclase, GGDEF domain M0D48_07665 PF00121 Triosephosphate isomerase M0D48_07680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M0D48_07685 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M0D48_07690 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M0D48_07695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M0D48_07705 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M0D48_07705 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M0D48_07705 PF10531 SLBB domain M0D48_07710 PF00384 Molybdopterin oxidoreductase M0D48_07710 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M0D48_07710 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal M0D48_07715 PF00146 NADH dehydrogenase M0D48_07720 PF12838 4Fe-4S dicluster domain M0D48_07725 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M0D48_07730 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M0D48_07735 PF00361 Proton-conducting membrane transporter M0D48_07735 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M0D48_07740 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus M0D48_07740 PF00361 Proton-conducting membrane transporter M0D48_07745 PF00361 Proton-conducting membrane transporter M0D48_07755 PF02576 RimP N-terminal domain M0D48_07755 PF17384 RimP C-terminal SH3 domain M0D48_07760 PF13184 NusA-like KH domain M0D48_07760 PF00575 S1 RNA binding domain M0D48_07760 PF08529 NusA N-terminal domain M0D48_07765 PF08364 Bacterial translation initiation factor IF-2 associated region M0D48_07765 PF11987 Translation-initiation factor 2 M0D48_07765 PF04760 Translation initiation factor IF-2, N-terminal region M0D48_07765 PF00009 Elongation factor Tu GTP binding domain M0D48_07770 PF02033 Ribosome-binding factor A M0D48_07775 PF01509 TruB family pseudouridylate synthase (N terminal domain) M0D48_07775 PF16198 tRNA pseudouridylate synthase B C-terminal domain M0D48_07775 PF09157 Pseudouridine synthase II TruB, C-terminal M0D48_07780 PF00312 Ribosomal protein S15 M0D48_07785 PF00013 KH domain M0D48_07785 PF00575 S1 RNA binding domain M0D48_07785 PF03725 3' exoribonuclease family, domain 2 M0D48_07785 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M0D48_07785 PF01138 3' exoribonuclease family, domain 1 M0D48_07795 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M0D48_07795 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M0D48_07805 PF00731 AIR carboxylase M0D48_07810 PF02222 ATP-grasp domain M0D48_07810 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M0D48_07815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M0D48_07815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M0D48_07820 PF00462 Glutaredoxin M0D48_07830 PF01914 MarC family integral membrane protein M0D48_07835 PF00593 TonB dependent receptor M0D48_07840 PF11892 Domain of unknown function (DUF3412) M0D48_07840 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M0D48_07840 PF03641 Possible lysine decarboxylase M0D48_07845 PF12019 Type II transport protein GspH M0D48_07845 PF07963 Prokaryotic N-terminal methylation motif M0D48_07865 PF05567 Neisseria PilC beta-propeller domain M0D48_07870 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor M0D48_07870 PF07963 Prokaryotic N-terminal methylation motif M0D48_07880 PF07963 Prokaryotic N-terminal methylation motif M0D48_07880 PF00114 Pilin (bacterial filament) M0D48_07885 PF02151 UvrB/uvrC motif M0D48_07885 PF04851 Type III restriction enzyme, res subunit M0D48_07885 PF00271 Helicase conserved C-terminal domain M0D48_07885 PF12344 Ultra-violet resistance protein B M0D48_07885 PF17757 UvrB interaction domain M0D48_07900 PF02534 Type IV secretory system Conjugative DNA transfer M0D48_07920 PF03743 Bacterial conjugation TrbI-like protein M0D48_07925 PF00437 Type II/IV secretion system protein M0D48_07930 PF01464 Transglycosylase SLT domain M0D48_07940 PF05101 Type IV secretory pathway, VirB3-like protein M0D48_07945 PF03135 CagE, TrbE, VirB family, component of type IV transporter system M0D48_07950 PF00128 Alpha amylase, catalytic domain M0D48_07970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M0D48_07975 PF00128 Alpha amylase, catalytic domain M0D48_07975 PF00686 Starch binding domain M0D48_07980 PF00356 Bacterial regulatory proteins, lacI family M0D48_07985 PF03129 Anticodon binding domain M0D48_07985 PF02824 TGS domain M0D48_07985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M0D48_07985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M0D48_07990 PF05198 Translation initiation factor IF-3, N-terminal domain M0D48_07990 PF00707 Translation initiation factor IF-3, C-terminal domain M0D48_07995 PF01632 Ribosomal protein L35 M0D48_08000 PF00453 Ribosomal protein L20 M0D48_08005 PF01409 tRNA synthetases class II core domain (F) M0D48_08005 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M0D48_08010 PF03483 B3/4 domain M0D48_08010 PF03484 tRNA synthetase B5 domain M0D48_08010 PF03147 Ferredoxin-fold anticodon binding domain M0D48_08010 PF01588 Putative tRNA binding domain M0D48_08010 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M0D48_08015 PF00216 Bacterial DNA-binding protein M0D48_08020 PF13411 MerR HTH family regulatory protein M0D48_08045 PF02397 Bacterial sugar transferase M0D48_08065 PF00534 Glycosyl transferases group 1 M0D48_08065 PF13439 Glycosyltransferase Family 4 M0D48_08075 PF14667 Polysaccharide biosynthesis C-terminal domain M0D48_08090 PF03808 Glycosyl transferase WecB/TagA/CpsF family M0D48_08105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M0D48_08105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M0D48_08115 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family M0D48_08135 PF02780 Transketolase, C-terminal domain M0D48_08135 PF02779 Transketolase, pyrimidine binding domain M0D48_08135 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M0D48_08145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_08145 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_08145 PF12806 Acetyl-CoA dehydrogenase C-terminal like M0D48_08145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_08155 PF08212 Lipocalin-like domain M0D48_08180 PF00893 Small Multidrug Resistance protein M0D48_08185 PF13426 PAS domain M0D48_08185 PF00072 Response regulator receiver domain M0D48_08185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_08190 PF04362 Bacterial Fe(2+) trafficking M0D48_08195 PF00633 Helix-hairpin-helix motif M0D48_08195 PF10576 Iron-sulfur binding domain of endonuclease III M0D48_08195 PF00730 HhH-GPD superfamily base excision DNA repair protein M0D48_08195 PF14815 NUDIX domain M0D48_08200 PF00448 SRP54-type protein, GTPase domain M0D48_08200 PF02881 SRP54-type protein, helical bundle domain M0D48_08210 PF05544 Proline racemase M0D48_08215 PF01266 FAD dependent oxidoreductase M0D48_08225 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_08225 PF04324 BFD-like [2Fe-2S] binding domain M0D48_08230 PF00701 Dihydrodipicolinate synthetase family M0D48_08235 PF00171 Aldehyde dehydrogenase family M0D48_08240 PF01321 Creatinase/Prolidase N-terminal domain M0D48_08240 PF00557 Metallopeptidase family M24 M0D48_08255 PF13520 Amino acid permease M0D48_08285 PF00593 TonB dependent receptor M0D48_08285 PF07715 TonB-dependent Receptor Plug Domain M0D48_08290 PF07532 Bacterial Ig-like domain (group 4) M0D48_08295 PF07532 Bacterial Ig-like domain (group 4) M0D48_08300 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region M0D48_08300 PF00326 Prolyl oligopeptidase family M0D48_08305 PF00593 TonB dependent receptor M0D48_08305 PF07715 TonB-dependent Receptor Plug Domain M0D48_08320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_08320 PF00183 Hsp90 protein M0D48_08330 PF01467 Cytidylyltransferase-like M0D48_08340 PF00037 4Fe-4S binding domain M0D48_08355 PF02927 Cellulase N-terminal ig-like domain M0D48_08355 PF00759 Glycosyl hydrolase family 9 M0D48_08385 PF00202 Aminotransferase class-III M0D48_08400 PF01702 Queuine tRNA-ribosyltransferase M0D48_08405 PF02699 Preprotein translocase subunit M0D48_08410 PF02355 Protein export membrane protein M0D48_08410 PF07549 SecD/SecF GG Motif M0D48_08410 PF13721 SecD export protein N-terminal TM region M0D48_08415 PF07549 SecD/SecF GG Motif M0D48_08415 PF02355 Protein export membrane protein M0D48_08420 PF13495 Phage integrase, N-terminal SAM-like domain M0D48_08420 PF00589 Phage integrase family M0D48_08450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M0D48_08455 PF00294 pfkB family carbohydrate kinase M0D48_08460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M0D48_08460 PF02896 PEP-utilising enzyme, TIM barrel domain M0D48_08460 PF00391 PEP-utilising enzyme, mobile domain M0D48_08460 PF05524 PEP-utilising enzyme, N-terminal M0D48_08460 PF00381 PTS HPr component phosphorylation site M0D48_08470 PF00873 AcrB/AcrD/AcrF family M0D48_08475 PF00529 HlyD membrane-fusion protein of T1SS M0D48_08475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_08485 PF05088 Bacterial NAD-glutamate dehydrogenase M0D48_08530 PF07690 Major Facilitator Superfamily M0D48_08535 PF00072 Response regulator receiver domain M0D48_08540 PF00512 His Kinase A (phospho-acceptor) domain M0D48_08540 PF00672 HAMP domain M0D48_08540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_08540 PF01627 Hpt domain M0D48_08540 PF00072 Response regulator receiver domain M0D48_08540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_08545 PF04286 Protein of unknown function (DUF445) M0D48_08555 PF00202 Aminotransferase class-III M0D48_08565 PF07690 Major Facilitator Superfamily M0D48_08570 PF02634 FdhD/NarQ family M0D48_08575 PF00384 Molybdopterin oxidoreductase M0D48_08585 PF00083 Sugar (and other) transporter M0D48_08585 PF07690 Major Facilitator Superfamily M0D48_08590 PF00072 Response regulator receiver domain M0D48_08590 PF00990 Diguanylate cyclase, GGDEF domain M0D48_08595 PF01266 FAD dependent oxidoreductase M0D48_08600 PF00120 Glutamine synthetase, catalytic domain M0D48_08605 PF07722 Peptidase C26 M0D48_08610 PF00120 Glutamine synthetase, catalytic domain M0D48_08615 PF00202 Aminotransferase class-III M0D48_08620 PF13416 Bacterial extracellular solute-binding protein M0D48_08625 PF13533 Biotin-lipoyl like M0D48_08630 PF07690 Major Facilitator Superfamily M0D48_08635 PF02321 Outer membrane efflux protein M0D48_08640 PF00005 ABC transporter M0D48_08640 PF08402 TOBE domain M0D48_08645 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_08650 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_08660 PF00171 Aldehyde dehydrogenase family M0D48_08675 PF03471 Transporter associated domain M0D48_08675 PF00571 CBS domain M0D48_08685 PF02130 Uncharacterized protein family UPF0054 M0D48_08695 PF02562 PhoH-like protein M0D48_08700 PF00919 Uncharacterized protein family UPF0004 M0D48_08700 PF04055 Radical SAM superfamily M0D48_08700 PF01938 TRAM domain M0D48_08715 PF01464 Transglycosylase SLT domain M0D48_08720 PF00355 Rieske [2Fe-2S] domain M0D48_08720 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M0D48_08725 PF00033 Cytochrome b/b6/petB M0D48_08725 PF00032 Cytochrome b(C-terminal)/b6/petD M0D48_08730 PF02167 Cytochrome C1 family M0D48_08735 PF00043 Glutathione S-transferase, C-terminal domain M0D48_08735 PF02798 Glutathione S-transferase, N-terminal domain M0D48_08740 PF04386 Stringent starvation protein B M0D48_08765 PF00271 Helicase conserved C-terminal domain M0D48_08765 PF08494 DEAD/H associated M0D48_08765 PF00270 DEAD/DEAH box helicase M0D48_08775 PF01584 CheW-like domain M0D48_08810 PF01612 3'-5' exonuclease M0D48_08810 PF00570 HRDC domain M0D48_08820 PF03781 Sulfatase-modifying factor enzyme 1 M0D48_08830 PF13742 OB-fold nucleic acid binding domain M0D48_08830 PF02601 Exonuclease VII, large subunit M0D48_08840 PF01256 Carbohydrate kinase M0D48_08840 PF03853 YjeF-related protein N-terminus M0D48_08845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M0D48_08850 PF11741 AMIN domain M0D48_08850 PF01520 N-acetylmuramoyl-L-alanine amidase M0D48_08855 PF01119 DNA mismatch repair protein, C-terminal domain M0D48_08855 PF08676 MutL C terminal dimerisation domain M0D48_08870 PF07879 PHB/PHA accumulation regulator DNA-binding domain M0D48_08870 PF05233 PHB accumulation regulatory domain M0D48_08875 PF00106 short chain dehydrogenase M0D48_08880 PF00749 tRNA synthetases class I (E and Q), catalytic domain M0D48_08885 PF01435 Peptidase family M48 M0D48_08890 PF00563 EAL domain M0D48_08890 PF00990 Diguanylate cyclase, GGDEF domain M0D48_08890 PF00072 Response regulator receiver domain M0D48_08900 PF07152 YaeQ protein M0D48_08905 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M0D48_08910 PF00313 'Cold-shock' DNA-binding domain M0D48_08915 PF14497 Glutathione S-transferase, C-terminal domain M0D48_08915 PF02798 Glutathione S-transferase, N-terminal domain M0D48_08925 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M0D48_08930 PF00156 Phosphoribosyl transferase domain M0D48_08935 PF03880 DbpA RNA binding domain M0D48_08935 PF00271 Helicase conserved C-terminal domain M0D48_08935 PF00270 DEAD/DEAH box helicase M0D48_08940 PF00005 ABC transporter M0D48_08940 PF16326 ABC transporter C-terminal domain M0D48_08940 PF12848 ABC transporter M0D48_08950 PF00545 ribonuclease M0D48_08955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M0D48_08955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M0D48_08960 PF00459 Inositol monophosphatase family M0D48_08975 PF00990 Diguanylate cyclase, GGDEF domain M0D48_08975 PF13188 PAS domain M0D48_08975 PF00563 EAL domain M0D48_08975 PF03707 Bacterial signalling protein N terminal repeat M0D48_08980 PF04055 Radical SAM superfamily M0D48_08985 PF01132 Elongation factor P (EF-P) OB domain M0D48_08985 PF08207 Elongation factor P (EF-P) KOW-like domain M0D48_08985 PF09285 Elongation factor P, C-terminal M0D48_08995 PF01979 Amidohydrolase family M0D48_09005 PF13419 Haloacid dehalogenase-like hydrolase M0D48_09015 PF00295 Glycosyl hydrolases family 28 M0D48_09020 PF01095 Pectinesterase M0D48_09040 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M0D48_09045 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M0D48_09055 PF08460 Bacterial SH3 domain M0D48_09055 PF01551 Peptidase family M23 M0D48_09060 PF01979 Amidohydrolase family M0D48_09065 PF01809 Putative membrane protein insertion efficiency factor M0D48_09075 PF01258 Prokaryotic dksA/traR C4-type zinc finger M0D48_09090 PF02657 Fe-S metabolism associated domain M0D48_09095 PF09190 DALR domain M0D48_09095 PF01406 tRNA synthetases class I (C) catalytic domain M0D48_09105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M0D48_09105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M0D48_09110 PF00764 Arginosuccinate synthase M0D48_09115 PF07687 Peptidase dimerisation domain M0D48_09115 PF01546 Peptidase family M20/M25/M40 M0D48_09120 PF00696 Amino acid kinase family M0D48_09120 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase M0D48_09130 PF01118 Semialdehyde dehydrogenase, NAD binding domain M0D48_09135 PF00206 Lyase M0D48_09160 PF01472 PUA domain M0D48_09160 PF00696 Amino acid kinase family M0D48_09165 PF00171 Aldehyde dehydrogenase family M0D48_09180 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M0D48_09180 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain M0D48_09200 PF02322 Cytochrome bd terminal oxidase subunit II M0D48_09205 PF01654 Cytochrome bd terminal oxidase subunit I M0D48_09210 PF00664 ABC transporter transmembrane region M0D48_09210 PF00005 ABC transporter M0D48_09215 PF00664 ABC transporter transmembrane region M0D48_09215 PF00005 ABC transporter M0D48_09225 PF00313 'Cold-shock' DNA-binding domain M0D48_09230 PF00561 alpha/beta hydrolase fold M0D48_09240 PF03918 Cytochrome C biogenesis protein M0D48_09245 PF08534 Redoxin M0D48_09250 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M0D48_09250 PF01578 Cytochrome C assembly protein M0D48_09255 PF03100 CcmE M0D48_09265 PF01578 Cytochrome C assembly protein M0D48_09270 PF03379 CcmB protein M0D48_09275 PF00005 ABC transporter M0D48_09280 PF00155 Aminotransferase class I and II M0D48_09285 PF00795 Carbon-nitrogen hydrolase M0D48_09300 PF01479 S4 domain M0D48_09300 PF00849 RNA pseudouridylate synthase M0D48_09305 PF04079 Segregation and condensation complex subunit ScpB M0D48_09310 PF02616 Segregation and condensation protein ScpA M0D48_09315 PF03795 YCII-related domain M0D48_09325 PF00356 Bacterial regulatory proteins, lacI family M0D48_09345 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_09350 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_09375 PF00795 Carbon-nitrogen hydrolase M0D48_09380 PF04371 Porphyromonas-type peptidyl-arginine deiminase M0D48_09390 PF00444 Ribosomal protein L36 M0D48_09395 PF02224 Cytidylate kinase M0D48_09400 PF00575 S1 RNA binding domain M0D48_09405 PF00216 Bacterial DNA-binding protein M0D48_09415 PF18073 Rubredoxin metal binding domain M0D48_09420 PF00953 Glycosyl transferase family 4 M0D48_09425 PF02719 Polysaccharide biosynthesis protein M0D48_09430 PF00483 Nucleotidyl transferase M0D48_09435 PF00999 Sodium/hydrogen exchanger family M0D48_09435 PF02254 TrkA-N domain M0D48_09445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M0D48_09445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M0D48_09450 PF00478 IMP dehydrogenase / GMP reductase domain M0D48_09450 PF00571 CBS domain M0D48_09455 PF00117 Glutamine amidotransferase class-I M0D48_09455 PF02540 NAD synthase M0D48_09455 PF00958 GMP synthase C terminal domain M0D48_09465 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) M0D48_09470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M0D48_09470 PF00361 Proton-conducting membrane transporter M0D48_09470 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus M0D48_09475 PF03466 LysR substrate binding domain M0D48_09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_09480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_09480 PF03466 LysR substrate binding domain M0D48_09485 PF03466 LysR substrate binding domain M0D48_09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_09525 PF00196 Bacterial regulatory proteins, luxR family M0D48_09525 PF00072 Response regulator receiver domain M0D48_09540 PF00857 Isochorismatase family M0D48_09550 PF07969 Amidohydrolase family M0D48_09555 PF05977 Transmembrane secretion effector M0D48_09565 PF00561 alpha/beta hydrolase fold M0D48_09570 PF01566 Natural resistance-associated macrophage protein M0D48_09575 PF01325 Iron dependent repressor, N-terminal DNA binding domain M0D48_09575 PF02742 Iron dependent repressor, metal binding and dimerisation domain M0D48_09580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M0D48_09585 PF00929 Exonuclease M0D48_09590 PF05552 Conserved TM helix M0D48_09590 PF00924 Mechanosensitive ion channel M0D48_09595 PF02896 PEP-utilising enzyme, TIM barrel domain M0D48_09595 PF00391 PEP-utilising enzyme, mobile domain M0D48_09595 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M0D48_09600 PF03618 Kinase/pyrophosphorylase M0D48_09620 PF01066 CDP-alcohol phosphatidyltransferase M0D48_09630 PF00561 alpha/beta hydrolase fold M0D48_09645 PF00355 Rieske [2Fe-2S] domain M0D48_09645 PF01266 FAD dependent oxidoreductase M0D48_09655 PF09371 Tex-like protein N-terminal domain M0D48_09655 PF00575 S1 RNA binding domain M0D48_09655 PF16921 Tex protein YqgF-like domain M0D48_09655 PF17674 HHH domain M0D48_09660 PF00672 HAMP domain M0D48_09660 PF00512 His Kinase A (phospho-acceptor) domain M0D48_09660 PF01627 Hpt domain M0D48_09660 PF00072 Response regulator receiver domain M0D48_09660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_09700 PF00034 Cytochrome c M0D48_09710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_09715 PF00873 AcrB/AcrD/AcrF family M0D48_09720 PF00873 AcrB/AcrD/AcrF family M0D48_09730 PF00920 Dehydratase family M0D48_09735 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M0D48_09740 PF02685 Glucokinase M0D48_09745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M0D48_09745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M0D48_09750 PF00005 ABC transporter M0D48_09750 PF17912 MalK OB fold domain M0D48_09770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M0D48_09775 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M0D48_09780 PF02910 Fumarate reductase flavoprotein C-term M0D48_09780 PF00890 FAD binding domain M0D48_09790 PF13085 2Fe-2S iron-sulfur cluster binding domain M0D48_09795 PF03937 Flavinator of succinate dehydrogenase M0D48_09805 PF12704 MacB-like periplasmic core domain M0D48_09805 PF02687 FtsX-like permease family M0D48_09810 PF00005 ABC transporter M0D48_09825 PF01618 MotA/TolQ/ExbB proton channel family M0D48_09840 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M0D48_09845 PF02348 Cytidylyltransferase M0D48_09850 PF01451 Low molecular weight phosphotyrosine protein phosphatase M0D48_09860 PF08459 UvrC Helix-hairpin-helix N-terminal M0D48_09860 PF02151 UvrB/uvrC motif M0D48_09860 PF01541 GIY-YIG catalytic domain M0D48_09865 PF01066 CDP-alcohol phosphatidyltransferase M0D48_09890 PF00668 Condensation domain M0D48_09890 PF00550 Phosphopantetheine attachment site M0D48_09890 PF00975 Thioesterase domain M0D48_09890 PF00501 AMP-binding enzyme M0D48_09890 PF13193 AMP-binding enzyme C-terminal domain M0D48_09895 PF00501 AMP-binding enzyme M0D48_09895 PF13193 AMP-binding enzyme C-terminal domain M0D48_09895 PF07993 Male sterility protein M0D48_09895 PF00550 Phosphopantetheine attachment site M0D48_09895 PF00668 Condensation domain M0D48_09900 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M0D48_09900 PF01648 4'-phosphopantetheinyl transferase superfamily M0D48_09910 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M0D48_09910 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M0D48_09910 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M0D48_09920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M0D48_09930 PF00581 Rhodanese-like domain M0D48_09930 PF17773 UPF0176 acylphosphatase like domain M0D48_09940 PF00575 S1 RNA binding domain M0D48_09940 PF12111 Polyribonucleotide phosphorylase C terminal M0D48_09940 PF10150 Ribonuclease E/G family M0D48_09945 PF00849 RNA pseudouridylate synthase M0D48_09945 PF01479 S4 domain M0D48_09950 PF11737 Protein of unknown function (DUF3300) M0D48_09955 PF02535 ZIP Zinc transporter M0D48_09965 PF01329 Pterin 4 alpha carbinolamine dehydratase M0D48_09970 PF01106 NifU-like domain M0D48_09985 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 M0D48_09990 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath M0D48_09995 PF05638 Type VI secretion system effector, Hcp M0D48_10000 PF07024 ImpE protein M0D48_10005 PF04965 Gene 25-like lysozyme M0D48_10010 PF05947 Type VI secretion system, TssF M0D48_10020 PF10431 C-terminal, D2-small domain, of ClpB protein M0D48_10020 PF17871 AAA lid domain M0D48_10020 PF07724 AAA domain (Cdc48 subfamily) M0D48_10020 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_10035 PF06715 Gp5 C-terminal repeat (3 copies) M0D48_10035 PF04717 Type VI secretion system, phage-baseplate injector M0D48_10050 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE M0D48_10060 PF06761 Intracellular multiplication and human macrophage-killing M0D48_10060 PF06744 Type VI secretion protein IcmF C-terminal M0D48_10060 PF14331 ImcF-related N-terminal domain M0D48_10075 PF00069 Protein kinase domain M0D48_10085 PF06812 ImpA, N-terminal, type VI secretion system M0D48_10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_10090 PF03466 LysR substrate binding domain M0D48_10095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_10095 PF00512 His Kinase A (phospho-acceptor) domain M0D48_10100 PF03150 Di-haem cytochrome c peroxidase M0D48_10100 PF00034 Cytochrome c M0D48_10105 PF00486 Transcriptional regulatory protein, C terminal M0D48_10105 PF00072 Response regulator receiver domain M0D48_10125 PF00529 HlyD membrane-fusion protein of T1SS M0D48_10125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_10130 PF00873 AcrB/AcrD/AcrF family M0D48_10135 PF00440 Bacterial regulatory proteins, tetR family M0D48_10135 PF18665 Tetracyclin repressor-like, C-terminal domain M0D48_10155 PF05199 GMC oxidoreductase M0D48_10155 PF00732 GMC oxidoreductase M0D48_10160 PF00106 short chain dehydrogenase M0D48_10175 PF02810 SEC-C motif M0D48_10175 PF07517 SecA DEAD-like domain M0D48_10175 PF07516 SecA Wing and Scaffold domain M0D48_10175 PF01043 SecA preprotein cross-linking domain M0D48_10190 PF01043 SecA preprotein cross-linking domain M0D48_10190 PF07517 SecA DEAD-like domain M0D48_10190 PF02810 SEC-C motif M0D48_10190 PF07516 SecA Wing and Scaffold domain M0D48_10205 PF02810 SEC-C motif M0D48_10205 PF07517 SecA DEAD-like domain M0D48_10205 PF01043 SecA preprotein cross-linking domain M0D48_10205 PF07516 SecA Wing and Scaffold domain M0D48_10225 PF12706 Beta-lactamase superfamily domain M0D48_10225 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain M0D48_10230 PF12706 Beta-lactamase superfamily domain M0D48_10230 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain M0D48_10235 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain M0D48_10235 PF12706 Beta-lactamase superfamily domain M0D48_10240 PF03621 MbtH-like protein M0D48_10245 PF00664 ABC transporter transmembrane region M0D48_10245 PF00005 ABC transporter M0D48_10250 PF00378 Enoyl-CoA hydratase/isomerase M0D48_10255 PF00155 Aminotransferase class I and II M0D48_10260 PF00378 Enoyl-CoA hydratase/isomerase M0D48_10270 PF00195 Chalcone and stilbene synthases, N-terminal domain M0D48_10270 PF02797 Chalcone and stilbene synthases, C-terminal domain M0D48_10275 PF13193 AMP-binding enzyme C-terminal domain M0D48_10275 PF00668 Condensation domain M0D48_10275 PF00550 Phosphopantetheine attachment site M0D48_10275 PF00975 Thioesterase domain M0D48_10275 PF00501 AMP-binding enzyme M0D48_10280 PF00501 AMP-binding enzyme M0D48_10280 PF13193 AMP-binding enzyme C-terminal domain M0D48_10280 PF00668 Condensation domain M0D48_10280 PF00550 Phosphopantetheine attachment site M0D48_10285 PF00501 AMP-binding enzyme M0D48_10285 PF00668 Condensation domain M0D48_10285 PF13193 AMP-binding enzyme C-terminal domain M0D48_10285 PF00550 Phosphopantetheine attachment site M0D48_10285 PF00975 Thioesterase domain M0D48_10295 PF00501 AMP-binding enzyme M0D48_10295 PF00668 Condensation domain M0D48_10295 PF00975 Thioesterase domain M0D48_10295 PF13193 AMP-binding enzyme C-terminal domain M0D48_10295 PF00550 Phosphopantetheine attachment site M0D48_10310 PF00668 Condensation domain M0D48_10310 PF00975 Thioesterase domain M0D48_10310 PF00550 Phosphopantetheine attachment site M0D48_10310 PF00501 AMP-binding enzyme M0D48_10310 PF13193 AMP-binding enzyme C-terminal domain M0D48_10315 PF13193 AMP-binding enzyme C-terminal domain M0D48_10315 PF00975 Thioesterase domain M0D48_10315 PF00550 Phosphopantetheine attachment site M0D48_10315 PF00668 Condensation domain M0D48_10315 PF00501 AMP-binding enzyme M0D48_10320 PF13193 AMP-binding enzyme C-terminal domain M0D48_10320 PF00501 AMP-binding enzyme M0D48_10320 PF00668 Condensation domain M0D48_10320 PF00550 Phosphopantetheine attachment site M0D48_10320 PF00975 Thioesterase domain M0D48_10325 PF00550 Phosphopantetheine attachment site M0D48_10325 PF00668 Condensation domain M0D48_10325 PF13193 AMP-binding enzyme C-terminal domain M0D48_10325 PF00501 AMP-binding enzyme M0D48_10340 PF00155 Aminotransferase class I and II M0D48_10345 PF01070 FMN-dependent dehydrogenase M0D48_10350 PF00202 Aminotransferase class-III M0D48_10370 PF02585 GlcNAc-PI de-N-acetylase M0D48_10370 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M0D48_10385 PF01494 FAD binding domain M0D48_10390 PF09335 SNARE associated Golgi protein M0D48_10400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M0D48_10405 PF07995 Glucose / Sorbosone dehydrogenase M0D48_10415 PF00144 Beta-lactamase M0D48_10420 PF04397 LytTr DNA-binding domain M0D48_10420 PF00072 Response regulator receiver domain M0D48_10425 PF07694 5TMR of 5TMR-LYT M0D48_10425 PF13492 GAF domain M0D48_10425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_10425 PF06580 Histidine kinase M0D48_10435 PF00082 Subtilase family M0D48_10435 PF03797 Autotransporter beta-domain M0D48_10440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_10445 PF00873 AcrB/AcrD/AcrF family M0D48_10455 PF00512 His Kinase A (phospho-acceptor) domain M0D48_10455 PF08448 PAS fold M0D48_10455 PF13426 PAS domain M0D48_10455 PF00072 Response regulator receiver domain M0D48_10455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_10460 PF00196 Bacterial regulatory proteins, luxR family M0D48_10460 PF00072 Response regulator receiver domain M0D48_10465 PF12951 Passenger-associated-transport-repeat M0D48_10470 PF08448 PAS fold M0D48_10470 PF00563 EAL domain M0D48_10470 PF00990 Diguanylate cyclase, GGDEF domain M0D48_10470 PF08447 PAS fold M0D48_10495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M0D48_10500 PF01568 Molydopterin dinucleotide binding domain M0D48_10500 PF00384 Molybdopterin oxidoreductase M0D48_10500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M0D48_10500 PF04324 BFD-like [2Fe-2S] binding domain M0D48_10510 PF18267 Rubredoxin NAD+ reductase C-terminal domain M0D48_10510 PF04324 BFD-like [2Fe-2S] binding domain M0D48_10510 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M0D48_10510 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M0D48_10510 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_10515 PF07690 Major Facilitator Superfamily M0D48_10525 PF03861 ANTAR domain M0D48_10525 PF00072 Response regulator receiver domain M0D48_10530 PF10414 Sirohaem synthase dimerisation region M0D48_10530 PF14824 Sirohaem biosynthesis protein central M0D48_10530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M0D48_10540 PF12804 MobA-like NTP transferase domain M0D48_10545 PF03453 MoeA N-terminal region (domain I and II) M0D48_10545 PF03454 MoeA C-terminal region (domain IV) M0D48_10545 PF00994 Probable molybdopterin binding domain M0D48_10555 PF03372 Endonuclease/Exonuclease/phosphatase family M0D48_10565 PF00899 ThiF family M0D48_10570 PF00994 Probable molybdopterin binding domain M0D48_10570 PF03454 MoeA C-terminal region (domain IV) M0D48_10570 PF03453 MoeA N-terminal region (domain I and II) M0D48_10575 PF01926 50S ribosome-binding GTPase M0D48_10575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M0D48_10580 PF13360 PQQ-like domain M0D48_10580 PF01011 PQQ enzyme repeat M0D48_10590 PF13464 Domain of unknown function (DUF4115) M0D48_10600 PF04055 Radical SAM superfamily M0D48_10605 PF00334 Nucleoside diphosphate kinase M0D48_10615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M0D48_10615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M0D48_10615 PF00378 Enoyl-CoA hydratase/isomerase M0D48_10620 PF00108 Thiolase, N-terminal domain M0D48_10620 PF02803 Thiolase, C-terminal domain M0D48_10625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M0D48_10630 PF16193 AAA C-terminal domain M0D48_10630 PF12002 MgsA AAA+ ATPase C terminal M0D48_10630 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_10640 PF03548 Outer membrane lipoprotein carrier protein LolA M0D48_10650 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M0D48_10650 PF17854 FtsK alpha domain M0D48_10650 PF09397 Ftsk gamma domain M0D48_10650 PF01580 FtsK/SpoIIIE family M0D48_10655 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_10665 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M0D48_10670 PF01176 Translation initiation factor 1A / IF-1 M0D48_10675 PF02861 Clp amino terminal domain, pathogenicity island component M0D48_10675 PF17871 AAA lid domain M0D48_10675 PF10431 C-terminal, D2-small domain, of ClpB protein M0D48_10675 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_10675 PF07724 AAA domain (Cdc48 subfamily) M0D48_10680 PF02617 ATP-dependent Clp protease adaptor protein ClpS M0D48_10690 PF00293 NUDIX domain M0D48_10700 PF04356 Protein of unknown function (DUF489) M0D48_10705 PF12729 Four helix bundle sensory module for signal transduction M0D48_10705 PF00672 HAMP domain M0D48_10705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_10720 PF00990 Diguanylate cyclase, GGDEF domain M0D48_10720 PF03707 Bacterial signalling protein N terminal repeat M0D48_10720 PF00563 EAL domain M0D48_10730 PF03707 Bacterial signalling protein N terminal repeat M0D48_10730 PF00563 EAL domain M0D48_10730 PF00990 Diguanylate cyclase, GGDEF domain M0D48_10735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_10735 PF00512 His Kinase A (phospho-acceptor) domain M0D48_10735 PF00989 PAS fold M0D48_10735 PF13188 PAS domain M0D48_10735 PF13426 PAS domain M0D48_10755 PF01584 CheW-like domain M0D48_10755 PF00072 Response regulator receiver domain M0D48_10765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M0D48_10765 PF00460 Flagella basal body rod protein M0D48_10770 PF03963 Flagellar hook capping protein - N-terminal region M0D48_10775 PF07559 Flagellar basal body protein FlaE M0D48_10775 PF00460 Flagella basal body rod protein M0D48_10775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M0D48_10780 PF00460 Flagella basal body rod protein M0D48_10780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M0D48_10785 PF00460 Flagella basal body rod protein M0D48_10785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M0D48_10790 PF02107 Flagellar L-ring protein M0D48_10795 PF02119 Flagellar P-ring protein M0D48_10800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M0D48_10800 PF10135 Rod binding protein M0D48_10805 PF07196 Flagellin hook IN motif M0D48_10805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M0D48_10810 PF00700 Bacterial flagellin C-terminal helical region M0D48_10810 PF00669 Bacterial flagellin N-terminal helical region M0D48_10820 PF00700 Bacterial flagellin C-terminal helical region M0D48_10820 PF00669 Bacterial flagellin N-terminal helical region M0D48_10825 PF07195 Flagellar hook-associated protein 2 C-terminus M0D48_10825 PF02465 Flagellar hook-associated protein 2 N-terminus M0D48_10825 PF07196 Flagellin hook IN motif M0D48_10830 PF02561 Flagellar protein FliS M0D48_10845 PF00196 Bacterial regulatory proteins, luxR family M0D48_10845 PF00072 Response regulator receiver domain M0D48_10850 PF04963 Sigma-54 factor, core binding domain M0D48_10850 PF04552 Sigma-54, DNA binding domain M0D48_10850 PF00309 Sigma-54 factor, Activator interacting domain (AID) M0D48_10855 PF01339 CheB methylesterase M0D48_10855 PF00072 Response regulator receiver domain M0D48_10860 PF06490 Flagellar regulatory protein FleQ M0D48_10860 PF02954 Bacterial regulatory protein, Fis family M0D48_10860 PF00158 Sigma-54 interaction domain M0D48_10865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M0D48_10875 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M0D48_10875 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M0D48_10920 PF02348 Cytidylyltransferase M0D48_10945 PF00534 Glycosyl transferases group 1 M0D48_10945 PF00535 Glycosyl transferase family 2 M0D48_10950 PF02049 Flagellar hook-basal body complex protein FliE M0D48_10955 PF01514 Secretory protein of YscJ/FliF family M0D48_10955 PF08345 Flagellar M-ring protein C-terminal M0D48_10960 PF01706 FliG C-terminal domain M0D48_10960 PF14841 FliG middle domain M0D48_10960 PF14842 FliG N-terminal domain M0D48_10970 PF18269 T3SS EscN ATPase C-terminal domain M0D48_10970 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M0D48_10990 PF02154 Flagellar motor switch protein FliM M0D48_10990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M0D48_10995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M0D48_11000 PF04347 Flagellar biosynthesis protein, FliO M0D48_11005 PF00813 FliP family M0D48_11010 PF01313 Bacterial export proteins, family 3 M0D48_11015 PF01311 Bacterial export proteins, family 1 M0D48_11020 PF00990 Diguanylate cyclase, GGDEF domain M0D48_11025 PF00990 Diguanylate cyclase, GGDEF domain M0D48_11030 PF00563 EAL domain M0D48_11030 PF00990 Diguanylate cyclase, GGDEF domain M0D48_11030 PF03707 Bacterial signalling protein N terminal repeat M0D48_11035 PF01312 FlhB HrpN YscU SpaS Family M0D48_11040 PF00771 FHIPEP family M0D48_11050 PF10609 NUBPL iron-transfer P-loop NTPase M0D48_11055 PF04545 Sigma-70, region 4 M0D48_11055 PF04542 Sigma-70 region 2 M0D48_11055 PF04539 Sigma-70 region 3 M0D48_11060 PF00072 Response regulator receiver domain M0D48_11065 PF04344 Chemotaxis phosphatase, CheZ M0D48_11070 PF00072 Response regulator receiver domain M0D48_11070 PF01627 Hpt domain M0D48_11070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_11070 PF01584 CheW-like domain M0D48_11070 PF02895 Signal transducing histidine kinase, homodimeric domain M0D48_11140 PF13180 PDZ domain M0D48_11140 PF03572 Peptidase family S41 M0D48_11145 PF01618 MotA/TolQ/ExbB proton channel family M0D48_11150 PF13677 Membrane MotB of proton-channel complex MotA/MotB M0D48_11150 PF00691 OmpA family M0D48_11155 PF13614 AAA domain M0D48_11160 PF01584 CheW-like domain M0D48_11170 PF00072 Response regulator receiver domain M0D48_11175 PF09078 CheY binding M0D48_11175 PF02895 Signal transducing histidine kinase, homodimeric domain M0D48_11175 PF01627 Hpt domain M0D48_11175 PF01584 CheW-like domain M0D48_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_11180 PF00672 HAMP domain M0D48_11180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11180 PF02203 Tar ligand binding domain homologue M0D48_11190 PF00672 HAMP domain M0D48_11190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11190 PF02203 Tar ligand binding domain homologue M0D48_11195 PF00672 HAMP domain M0D48_11195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11195 PF02203 Tar ligand binding domain homologue M0D48_11205 PF02203 Tar ligand binding domain homologue M0D48_11205 PF00672 HAMP domain M0D48_11205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11210 PF00672 HAMP domain M0D48_11210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11220 PF00672 HAMP domain M0D48_11220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11220 PF02203 Tar ligand binding domain homologue M0D48_11225 PF00672 HAMP domain M0D48_11225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11225 PF02203 Tar ligand binding domain homologue M0D48_11230 PF00672 HAMP domain M0D48_11230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11230 PF02203 Tar ligand binding domain homologue M0D48_11235 PF00672 HAMP domain M0D48_11235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11235 PF02203 Tar ligand binding domain homologue M0D48_11240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11240 PF02203 Tar ligand binding domain homologue M0D48_11240 PF00672 HAMP domain M0D48_11245 PF02203 Tar ligand binding domain homologue M0D48_11245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11245 PF00672 HAMP domain M0D48_11250 PF07238 PilZ domain M0D48_11250 PF07317 Flagellar regulator YcgR M0D48_11255 PF01584 CheW-like domain M0D48_11265 PF02203 Tar ligand binding domain homologue M0D48_11265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_11265 PF00672 HAMP domain M0D48_11270 PF01739 CheR methyltransferase, SAM binding domain M0D48_11270 PF03705 CheR methyltransferase, all-alpha domain M0D48_11275 PF03975 CheD chemotactic sensory transduction M0D48_11280 PF01339 CheB methylesterase M0D48_11280 PF00072 Response regulator receiver domain M0D48_11285 PF00563 EAL domain M0D48_11285 PF00990 Diguanylate cyclase, GGDEF domain M0D48_11285 PF03707 Bacterial signalling protein N terminal repeat M0D48_11295 PF00561 alpha/beta hydrolase fold M0D48_11300 PF11791 Aconitate B N-terminal domain M0D48_11300 PF00330 Aconitase family (aconitate hydratase) M0D48_11300 PF06434 Aconitate hydratase 2 N-terminus M0D48_11315 PF00694 Aconitase C-terminal domain M0D48_11315 PF00330 Aconitase family (aconitate hydratase) M0D48_11325 PF00501 AMP-binding enzyme M0D48_11325 PF13193 AMP-binding enzyme C-terminal domain M0D48_11330 PF00378 Enoyl-CoA hydratase/isomerase M0D48_11335 PF00072 Response regulator receiver domain M0D48_11335 PF01627 Hpt domain M0D48_11335 PF00512 His Kinase A (phospho-acceptor) domain M0D48_11335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_11340 PF00072 Response regulator receiver domain M0D48_11345 PF01336 OB-fold nucleic acid binding domain M0D48_11345 PF00152 tRNA synthetases class II (D, K and N) M0D48_11355 PF00072 Response regulator receiver domain M0D48_11355 PF04397 LytTr DNA-binding domain M0D48_11370 PF17768 RecJ OB domain M0D48_11370 PF02272 DHHA1 domain M0D48_11370 PF01368 DHH family M0D48_11380 PF01272 Transcription elongation factor, GreA/GreB, C-term M0D48_11380 PF03449 Transcription elongation factor, N-terminal M0D48_11385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M0D48_11385 PF02142 MGS-like domain M0D48_11385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M0D48_11395 PF00117 Glutamine amidotransferase class-I M0D48_11395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M0D48_11400 PF05173 Dihydrodipicolinate reductase, C-terminus M0D48_11400 PF01113 Dihydrodipicolinate reductase, N-terminus M0D48_11410 PF03475 3-alpha domain M0D48_11410 PF03473 MOSC domain M0D48_11415 PF00155 Aminotransferase class I and II M0D48_11435 PF07664 Ferrous iron transport protein B C terminus M0D48_11435 PF02421 Ferrous iron transport protein B M0D48_11435 PF07670 Nucleoside recognition M0D48_11445 PF00378 Enoyl-CoA hydratase/isomerase M0D48_11450 PF00682 HMGL-like M0D48_11455 PF00106 short chain dehydrogenase M0D48_11460 PF01132 Elongation factor P (EF-P) OB domain M0D48_11460 PF08207 Elongation factor P (EF-P) KOW-like domain M0D48_11460 PF09285 Elongation factor P, C-terminal M0D48_11480 PF02913 FAD linked oxidases, C-terminal domain M0D48_11480 PF01565 FAD binding domain M0D48_11485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M0D48_11485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M0D48_11495 PF13520 Amino acid permease M0D48_11500 PF13520 Amino acid permease M0D48_11505 PF00596 Class II Aldolase and Adducin N-terminal domain M0D48_11510 PF03079 ARD/ARD' family M0D48_11530 PF01502 Phosphoribosyl-AMP cyclohydrolase M0D48_11530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M0D48_11535 PF00977 Histidine biosynthesis protein M0D48_11540 PF00977 Histidine biosynthesis protein M0D48_11545 PF00117 Glutamine amidotransferase class-I M0D48_11550 PF00475 Imidazoleglycerol-phosphate dehydratase M0D48_11555 PF00155 Aminotransferase class I and II M0D48_11560 PF00815 Histidinol dehydrogenase M0D48_11565 PF01634 ATP phosphoribosyltransferase M0D48_11565 PF08029 HisG, C-terminal domain M0D48_11575 PF03129 Anticodon binding domain M0D48_11575 PF13393 Histidyl-tRNA synthetase M0D48_11585 PF00027 Cyclic nucleotide-binding domain M0D48_11585 PF13545 Crp-like helix-turn-helix domain M0D48_11595 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_11595 PF14821 Threonine synthase N terminus M0D48_11605 PF08544 GHMP kinases C terminal M0D48_11605 PF00288 GHMP kinases N terminal domain M0D48_11610 PF13840 ACT domain M0D48_11610 PF03447 Homoserine dehydrogenase, NAD binding domain M0D48_11610 PF00742 Homoserine dehydrogenase M0D48_11610 PF01842 ACT domain M0D48_11610 PF00696 Amino acid kinase family M0D48_11615 PF03073 TspO/MBR family M0D48_11630 PF04829 Pre-toxin domain with VENN motif M0D48_11630 PF05860 haemagglutination activity domain M0D48_11630 PF13332 Hemagglutinin repeat M0D48_11650 PF05594 Haemagluttinin repeat M0D48_11650 PF13018 Extended Signal Peptide of Type V secretion system M0D48_11650 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain M0D48_11650 PF05860 haemagglutination activity domain M0D48_11650 PF13332 Hemagglutinin repeat M0D48_11655 PF17287 POTRA domain M0D48_11655 PF08479 POTRA domain, ShlB-type M0D48_11655 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M0D48_11670 PF00171 Aldehyde dehydrogenase family M0D48_11685 PF01180 Dihydroorotate dehydrogenase M0D48_11690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M0D48_11690 PF01565 FAD binding domain M0D48_11695 PF00892 EamA-like transporter family M0D48_11700 PF01177 Asp/Glu/Hydantoin racemase M0D48_11705 PF07690 Major Facilitator Superfamily M0D48_11710 PF01569 PAP2 superfamily M0D48_11715 PF04551 GcpE protein M0D48_11725 PF00072 Response regulator receiver domain M0D48_11730 PF02013 Cellulose or protein binding domain M0D48_11730 PF00150 Cellulase (glycosyl hydrolase family 5) M0D48_11735 PF00990 Diguanylate cyclase, GGDEF domain M0D48_11735 PF00360 Phytochrome region M0D48_11735 PF01590 GAF domain M0D48_11735 PF00563 EAL domain M0D48_11740 PF00474 Sodium:solute symporter family M0D48_11745 PF14310 Fibronectin type III-like domain M0D48_11745 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_11745 PF01915 Glycosyl hydrolase family 3 C-terminal domain M0D48_11770 PF00342 Phosphoglucose isomerase M0D48_11775 PF02261 Aspartate decarboxylase M0D48_11780 PF02569 Pantoate-beta-alanine ligase M0D48_11785 PF02548 Ketopantoate hydroxymethyltransferase M0D48_11790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M0D48_11795 PF01743 Poly A polymerase head domain M0D48_11795 PF12626 Polymerase A arginine-rich C-terminus M0D48_11795 PF12627 Probable RNA and SrmB- binding site of polymerase A M0D48_11805 PF02649 Type I GTP cyclohydrolase folE2 M0D48_11810 PF01520 N-acetylmuramoyl-L-alanine amidase M0D48_11830 PF00083 Sugar (and other) transporter M0D48_11840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M0D48_11840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M0D48_11850 PF16338 Domain of unknown function (DUF4968) M0D48_11850 PF17137 Domain of unknown function (DUF5110) M0D48_11850 PF01055 Glycosyl hydrolases family 31 M0D48_11860 PF02837 Glycosyl hydrolases family 2, sugar binding domain M0D48_11860 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M0D48_11860 PF02929 Beta galactosidase small chain M0D48_11860 PF16353 Domain of unknown function(DUF4981) M0D48_11860 PF00703 Glycosyl hydrolases family 2 M0D48_11865 PF00942 Cellulose binding domain M0D48_11865 PF03442 Carbohydrate binding domain X2 M0D48_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_11885 PF03466 LysR substrate binding domain M0D48_11890 PF01081 KDPG and KHG aldolase M0D48_11895 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M0D48_11895 PF13378 Enolase C-terminal domain-like M0D48_11900 PF08450 SMP-30/Gluconolactonase/LRE-like region M0D48_11905 PF05035 2-keto-3-deoxy-galactonokinase M0D48_11910 PF00037 4Fe-4S binding domain M0D48_11910 PF11953 Domain of unknown function (DUF3470) M0D48_11920 PF00701 Dihydrodipicolinate synthetase family M0D48_11935 PF00578 AhpC/TSA family M0D48_11940 PF02562 PhoH-like protein M0D48_11940 PF13638 PIN domain M0D48_11955 PF08543 Phosphomethylpyrimidine kinase M0D48_11955 PF02581 Thiamine monophosphate synthase M0D48_11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_11980 PF03466 LysR substrate binding domain M0D48_11985 PF02678 Pirin M0D48_11985 PF17954 Quercetinase C-terminal cupin domain M0D48_11990 PF08447 PAS fold M0D48_11990 PF13426 PAS domain M0D48_11990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_12000 PF02599 Global regulator protein family M0D48_12005 PF02272 DHHA1 domain M0D48_12005 PF01411 tRNA synthetases class II (A) M0D48_12005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M0D48_12010 PF02631 RecX family M0D48_12015 PF00154 recA bacterial DNA recombination protein M0D48_12020 PF00717 Peptidase S24-like M0D48_12020 PF01726 LexA DNA binding domain M0D48_12025 PF03109 ABC1 family M0D48_12030 PF02464 Competence-damaged protein M0D48_12035 PF01926 50S ribosome-binding GTPase M0D48_12035 PF16360 GTP-binding GTPase Middle Region M0D48_12035 PF13167 GTP-binding GTPase N-terminal M0D48_12040 PF17209 Hfq protein M0D48_12050 PF00809 Pterin binding enzyme M0D48_12055 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_12055 PF17862 AAA+ lid domain M0D48_12055 PF06480 FtsH Extracellular M0D48_12055 PF01434 Peptidase family M41 M0D48_12060 PF01728 FtsJ-like methyltransferase M0D48_12065 PF01985 CRS1 / YhbY (CRM) domain M0D48_12070 PF04430 Protein of unknown function (DUF498/DUF598) M0D48_12075 PF01476 LysM domain M0D48_12075 PF01551 Peptidase family M23 M0D48_12080 PF09335 SNARE associated Golgi protein M0D48_12090 PF01975 Survival protein SurE M0D48_12095 PF01713 Smr domain M0D48_12100 PF01142 tRNA pseudouridine synthase D (TruD) M0D48_12105 PF02542 YgbB family M0D48_12110 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M0D48_12115 PF04977 Septum formation initiator M0D48_12120 PF00113 Enolase, C-terminal TIM barrel domain M0D48_12120 PF03952 Enolase, N-terminal domain M0D48_12130 PF00793 DAHP synthetase I family M0D48_12135 PF00117 Glutamine amidotransferase class-I M0D48_12135 PF06418 CTP synthase N-terminus M0D48_12145 PF00204 DNA gyrase B M0D48_12145 PF01751 Toprim domain M0D48_12145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_12145 PF00986 DNA gyrase B subunit, carboxyl terminus M0D48_12160 PF01384 Phosphate transporter family M0D48_12170 PF01595 Cyclin M transmembrane N-terminal domain M0D48_12170 PF03471 Transporter associated domain M0D48_12170 PF00571 CBS domain M0D48_12185 PF00296 Luciferase-like monooxygenase M0D48_12190 PF07690 Major Facilitator Superfamily M0D48_12195 PF00005 ABC transporter M0D48_12195 PF00664 ABC transporter transmembrane region M0D48_12200 PF06745 KaiC M0D48_12215 PF00534 Glycosyl transferases group 1 M0D48_12215 PF13579 Glycosyl transferase 4-like domain M0D48_12230 PF01979 Amidohydrolase family M0D48_12230 PF13382 Adenine deaminase C-terminal domain M0D48_12235 PF08241 Methyltransferase domain M0D48_12250 PF00535 Glycosyl transferase family 2 M0D48_12255 PF01943 Polysaccharide biosynthesis protein M0D48_12260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M0D48_12280 PF05523 WxcM-like, C-terminal M0D48_12295 PF00034 Cytochrome c M0D48_12305 PF04542 Sigma-70 region 2 M0D48_12305 PF08281 Sigma-70, region 4 M0D48_12315 PF00082 Subtilase family M0D48_12320 PF01578 Cytochrome C assembly protein M0D48_12325 PF04995 Heme exporter protein D (CcmD) M0D48_12330 PF03100 CcmE M0D48_12335 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M0D48_12335 PF01578 Cytochrome C assembly protein M0D48_12340 PF08534 Redoxin M0D48_12345 PF03918 Cytochrome C biogenesis protein M0D48_12355 PF13426 PAS domain M0D48_12355 PF00072 Response regulator receiver domain M0D48_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_12360 PF06745 KaiC M0D48_12365 PF01627 Hpt domain M0D48_12365 PF00512 His Kinase A (phospho-acceptor) domain M0D48_12365 PF00072 Response regulator receiver domain M0D48_12365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_12365 PF00672 HAMP domain M0D48_12365 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_12370 PF00072 Response regulator receiver domain M0D48_12370 PF08448 PAS fold M0D48_12370 PF00512 His Kinase A (phospho-acceptor) domain M0D48_12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_12370 PF13188 PAS domain M0D48_12380 PF01494 FAD binding domain M0D48_12385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_12385 PF00672 HAMP domain M0D48_12385 PF02203 Tar ligand binding domain homologue M0D48_12445 PF02086 D12 class N6 adenine-specific DNA methyltransferase M0D48_12450 PF04002 RadC-like JAB domain M0D48_12470 PF13361 UvrD-like helicase C-terminal domain M0D48_12470 PF00580 UvrD/REP helicase N-terminal domain M0D48_12470 PF12705 PD-(D/E)XK nuclease superfamily M0D48_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_12540 PF03466 LysR substrate binding domain M0D48_12545 PF02525 Flavodoxin-like fold M0D48_12550 PF02403 Seryl-tRNA synthetase N-terminal domain M0D48_12550 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M0D48_12555 PF03544 Gram-negative bacterial TonB protein C-terminal M0D48_12565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M0D48_12570 PF00800 Prephenate dehydratase M0D48_12570 PF01842 ACT domain M0D48_12570 PF01817 Chorismate mutase type II M0D48_12575 PF00266 Aminotransferase class-V M0D48_12580 PF00174 Oxidoreductase molybdopterin binding domain M0D48_12585 PF01794 Ferric reductase like transmembrane component M0D48_12610 PF00392 Bacterial regulatory proteins, gntR family M0D48_12610 PF07702 UTRA domain M0D48_12620 PF07969 Amidohydrolase family M0D48_12625 PF00221 Aromatic amino acid lyase M0D48_12635 PF17392 Urocanase C-terminal domain M0D48_12635 PF01175 Urocanase Rossmann-like domain M0D48_12635 PF17391 Urocanase N-terminal domain M0D48_12650 PF13360 PQQ-like domain M0D48_12660 PF03989 DNA gyrase C-terminal domain, beta-propeller M0D48_12660 PF00521 DNA gyrase/topoisomerase IV, subunit A M0D48_12665 PF01008 Initiation factor 2 subunit family M0D48_12680 PF00152 tRNA synthetases class II (D, K and N) M0D48_12685 PF12826 Helix-hairpin-helix motif M0D48_12685 PF00533 BRCA1 C Terminus (BRCT) domain M0D48_12685 PF03120 NAD-dependent DNA ligase OB-fold domain M0D48_12685 PF01653 NAD-dependent DNA ligase adenylation domain M0D48_12685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M0D48_12690 PF00155 Aminotransferase class I and II M0D48_12700 PF04354 ZipA, C-terminal FtsZ-binding domain M0D48_12705 PF02463 RecF/RecN/SMC N terminal domain M0D48_12710 PF03948 Ribosomal protein L9, C-terminal domain M0D48_12710 PF01281 Ribosomal protein L9, N-terminal domain M0D48_12715 PF01084 Ribosomal protein S18 M0D48_12720 PF01250 Ribosomal protein S6 M0D48_12725 PF01521 Iron-sulphur cluster biosynthesis M0D48_12730 PF01336 OB-fold nucleic acid binding domain M0D48_12730 PF00152 tRNA synthetases class II (D, K and N) M0D48_12755 PF00484 Carbonic anhydrase M0D48_12760 PF06052 3-hydroxyanthranilic acid dioxygenase M0D48_12770 PF00266 Aminotransferase class-V M0D48_12775 PF01494 FAD binding domain M0D48_12780 PF08411 Exonuclease C-terminal M0D48_12780 PF00929 Exonuclease M0D48_12790 PF00248 Aldo/keto reductase family M0D48_12805 PF01513 ATP-NAD kinase M0D48_12810 PF10672 S-adenosylmethionine-dependent methyltransferase M0D48_12810 PF02926 THUMP domain M0D48_12810 PF01170 Putative RNA methylase family UPF0020 M0D48_12845 PF00581 Rhodanese-like domain M0D48_12850 PF00293 NUDIX domain M0D48_12855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M0D48_12855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M0D48_12860 PF00378 Enoyl-CoA hydratase/isomerase M0D48_12870 PF00633 Helix-hairpin-helix motif M0D48_12870 PF00730 HhH-GPD superfamily base excision DNA repair protein M0D48_12870 PF10576 Iron-sulfur binding domain of endonuclease III M0D48_12875 PF01740 STAS domain M0D48_12875 PF00916 Sulfate permease family M0D48_12880 PF00484 Carbonic anhydrase M0D48_12895 PF12849 PBP superfamily domain M0D48_12900 PF12849 PBP superfamily domain M0D48_12905 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_12910 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_12915 PF00005 ABC transporter M0D48_12920 PF01895 PhoU domain M0D48_12930 PF00929 Exonuclease M0D48_12935 PF00990 Diguanylate cyclase, GGDEF domain M0D48_12940 PF00588 SpoU rRNA Methylase family M0D48_12940 PF08032 RNA 2'-O ribose methyltransferase substrate binding M0D48_12950 PF17876 Cold shock domain M0D48_12950 PF08461 Ribonuclease R winged-helix domain M0D48_12950 PF08206 Ribonuclease B OB domain M0D48_12950 PF00773 RNB domain M0D48_12950 PF00575 S1 RNA binding domain M0D48_12965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_12965 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_12965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_12970 PF01209 ubiE/COQ5 methyltransferase family M0D48_12975 PF00809 Pterin binding enzyme M0D48_12975 PF02574 Homocysteine S-methyltransferase M0D48_12985 PF02965 Vitamin B12 dependent methionine synthase, activation domain M0D48_12985 PF02607 B12 binding domain M0D48_12985 PF02574 Homocysteine S-methyltransferase M0D48_12985 PF02310 B12 binding domain M0D48_12985 PF00809 Pterin binding enzyme M0D48_12995 PF00294 pfkB family carbohydrate kinase M0D48_13000 PF07690 Major Facilitator Superfamily M0D48_13005 PF00356 Bacterial regulatory proteins, lacI family M0D48_13020 PF04102 SlyX M0D48_13025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M0D48_13025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M0D48_13025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M0D48_13030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M0D48_13030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M0D48_13035 PF00255 Glutathione peroxidase M0D48_13045 PF00392 Bacterial regulatory proteins, gntR family M0D48_13050 PF00005 ABC transporter M0D48_13080 PF10415 Fumarase C C-terminus M0D48_13080 PF00206 Lyase M0D48_13085 PF01595 Cyclin M transmembrane N-terminal domain M0D48_13085 PF00571 CBS domain M0D48_13085 PF03471 Transporter associated domain M0D48_13095 PF08328 Adenylosuccinate lyase C-terminal M0D48_13095 PF00206 Lyase M0D48_13110 PF08007 Cupin superfamily protein M0D48_13120 PF16078 2-oxoglutarate dehydrogenase N-terminus M0D48_13120 PF00676 Dehydrogenase E1 component M0D48_13120 PF16870 2-oxoglutarate dehydrogenase C-terminal M0D48_13120 PF02779 Transketolase, pyrimidine binding domain M0D48_13125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M0D48_13125 PF00364 Biotin-requiring enzyme M0D48_13125 PF02817 e3 binding domain M0D48_13130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M0D48_13130 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_13140 PF03641 Possible lysine decarboxylase M0D48_13145 PF01205 Uncharacterized protein family UPF0029 M0D48_13150 PF00005 ABC transporter M0D48_13150 PF00664 ABC transporter transmembrane region M0D48_13160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_13160 PF03466 LysR substrate binding domain M0D48_13165 PF00664 ABC transporter transmembrane region M0D48_13165 PF00005 ABC transporter M0D48_13165 PF03412 Peptidase C39 family M0D48_13190 PF08543 Phosphomethylpyrimidine kinase M0D48_13200 PF00226 DnaJ domain M0D48_13200 PF01556 DnaJ C terminal domain M0D48_13200 PF00684 DnaJ central domain M0D48_13205 PF00012 Hsp70 protein M0D48_13210 PF01025 GrpE M0D48_13215 PF01628 HrcA protein C terminal domain M0D48_13215 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding M0D48_13220 PF02463 RecF/RecN/SMC N terminal domain M0D48_13225 PF01475 Ferric uptake regulator family M0D48_13230 PF04355 SmpA / OmlA family M0D48_13235 PF03658 RnfH family Ubiquitin M0D48_13240 PF03364 Polyketide cyclase / dehydrase and lipid transport M0D48_13245 PF01668 SmpB protein M0D48_13250 PF00082 Subtilase family M0D48_13310 PF02794 RTX toxin acyltransferase family M0D48_13315 PF07690 Major Facilitator Superfamily M0D48_13330 PF03412 Peptidase C39 family M0D48_13330 PF00664 ABC transporter transmembrane region M0D48_13330 PF00005 ABC transporter M0D48_13350 PF02534 Type IV secretory system Conjugative DNA transfer M0D48_13455 PF04002 RadC-like JAB domain M0D48_13530 PF00990 Diguanylate cyclase, GGDEF domain M0D48_13540 PF00990 Diguanylate cyclase, GGDEF domain M0D48_13545 PF02321 Outer membrane efflux protein M0D48_13550 PF00106 short chain dehydrogenase M0D48_13555 PF00873 AcrB/AcrD/AcrF family M0D48_13560 PF00529 HlyD membrane-fusion protein of T1SS M0D48_13560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_13575 PF03466 LysR substrate binding domain M0D48_13580 PF00691 OmpA family M0D48_13580 PF05736 OprF membrane domain M0D48_13585 PF00875 DNA photolyase M0D48_13585 PF03441 FAD binding domain of DNA photolyase M0D48_13590 PF00772 DnaB-like helicase N terminal domain M0D48_13590 PF03796 DnaB-like helicase C terminal domain M0D48_13595 PF03358 NADPH-dependent FMN reductase M0D48_13600 PF00733 Asparagine synthase M0D48_13600 PF13537 Glutamine amidotransferase domain M0D48_13610 PF00043 Glutathione S-transferase, C-terminal domain M0D48_13610 PF02798 Glutathione S-transferase, N-terminal domain M0D48_13620 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_13620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_13620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_13635 PF01026 TatD related DNase M0D48_13640 PF00899 ThiF family M0D48_13655 PF00313 'Cold-shock' DNA-binding domain M0D48_13680 PF13291 ACT domain M0D48_13680 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_13700 PF05598 Transposase domain (DUF772) M0D48_13720 PF05681 Fumarate hydratase (Fumerase) M0D48_13720 PF05683 Fumarase C-terminus M0D48_13725 PF00005 ABC transporter M0D48_13730 PF00175 Oxidoreductase NAD-binding domain M0D48_13730 PF00970 Oxidoreductase FAD-binding domain M0D48_13735 PF00255 Glutathione peroxidase M0D48_13740 PF01432 Peptidase family M3 M0D48_13750 PF00082 Subtilase family M0D48_13755 PF08281 Sigma-70, region 4 M0D48_13755 PF04542 Sigma-70 region 2 M0D48_13790 PF00854 POT family M0D48_13800 PF14310 Fibronectin type III-like domain M0D48_13800 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_13800 PF01915 Glycosyl hydrolase family 3 C-terminal domain M0D48_13815 PF00144 Beta-lactamase M0D48_13820 PF07690 Major Facilitator Superfamily M0D48_13825 PF00529 HlyD membrane-fusion protein of T1SS M0D48_13825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M0D48_13830 PF02321 Outer membrane efflux protein M0D48_13845 PF03989 DNA gyrase C-terminal domain, beta-propeller M0D48_13845 PF00521 DNA gyrase/topoisomerase IV, subunit A M0D48_13850 PF05724 Thiopurine S-methyltransferase (TPMT) M0D48_13855 PF00210 Ferritin-like domain M0D48_13860 PF01804 Penicillin amidase M0D48_13870 PF00106 short chain dehydrogenase M0D48_13875 PF07715 TonB-dependent Receptor Plug Domain M0D48_13875 PF00593 TonB dependent receptor M0D48_13885 PF00733 Asparagine synthase M0D48_13885 PF13537 Glutamine amidotransferase domain M0D48_13890 PF07687 Peptidase dimerisation domain M0D48_13890 PF01546 Peptidase family M20/M25/M40 M0D48_13900 PF03960 ArsC family M0D48_13910 PF14602 Hexapeptide repeat of succinyl-transferase M0D48_13910 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M0D48_13910 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_13915 PF08335 GlnD PII-uridylyltransferase M0D48_13915 PF01966 HD domain M0D48_13915 PF01909 Nucleotidyltransferase domain M0D48_13920 PF00557 Metallopeptidase family M24 M0D48_13955 PF00318 Ribosomal protein S2 M0D48_13960 PF00889 Elongation factor TS M0D48_13965 PF00990 Diguanylate cyclase, GGDEF domain M0D48_13965 PF00072 Response regulator receiver domain M0D48_13970 PF00696 Amino acid kinase family M0D48_13975 PF01765 Ribosome recycling factor M0D48_13980 PF01255 Putative undecaprenyl diphosphate synthase M0D48_13990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M0D48_13990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M0D48_13990 PF13288 DXP reductoisomerase C-terminal domain M0D48_13995 PF17820 PDZ domain M0D48_13995 PF02163 Peptidase family M50 M0D48_14000 PF07244 Surface antigen variable number repeat M0D48_14000 PF01103 Surface antigen M0D48_14010 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_14010 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M0D48_14015 PF07977 FabA-like domain M0D48_14020 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_14020 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M0D48_14025 PF02684 Lipid-A-disaccharide synthetase M0D48_14030 PF01351 Ribonuclease HII M0D48_14035 PF14579 Helix-hairpin-helix motif M0D48_14035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M0D48_14035 PF07733 Bacterial DNA polymerase III alpha NTPase domain M0D48_14035 PF01336 OB-fold nucleic acid binding domain M0D48_14035 PF02811 PHP domain M0D48_14040 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M0D48_14065 PF03653 Uncharacterised protein family (UPF0093) M0D48_14085 PF03551 Transcriptional regulator PadR-like family M0D48_14105 PF02592 Putative vitamin uptake transporter M0D48_14120 PF01636 Phosphotransferase enzyme family M0D48_14125 PF02574 Homocysteine S-methyltransferase M0D48_14130 PF00324 Amino acid permease M0D48_14135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M0D48_14140 PF13732 Domain of unknown function (DUF4162) M0D48_14140 PF00005 ABC transporter M0D48_14155 PF01588 Putative tRNA binding domain M0D48_14155 PF09334 tRNA synthetases class I (M) M0D48_14165 PF04060 Putative Fe-S cluster M0D48_14180 PF04545 Sigma-70, region 4 M0D48_14180 PF04542 Sigma-70 region 2 M0D48_14225 PF01042 Endoribonuclease L-PSP M0D48_14235 PF09924 Uncharacterised conserved protein (DUF2156) M0D48_14235 PF03706 Lysylphosphatidylglycerol synthase TM region M0D48_14270 PF07690 Major Facilitator Superfamily M0D48_14275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M0D48_14280 PF03831 PhnA domain M0D48_14280 PF08274 PhnA Zinc-Ribbon M0D48_14290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M0D48_14315 PF08281 Sigma-70, region 4 M0D48_14315 PF04542 Sigma-70 region 2 M0D48_14325 PF01258 Prokaryotic dksA/traR C4-type zinc finger M0D48_14335 PF07043 Protein of unknown function (DUF1328) M0D48_14340 PF01863 Protein of unknown function DUF45 M0D48_14355 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M0D48_14355 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M0D48_14360 PF03797 Autotransporter beta-domain M0D48_14360 PF12951 Passenger-associated-transport-repeat M0D48_14360 PF00082 Subtilase family M0D48_14365 PF02803 Thiolase, C-terminal domain M0D48_14365 PF00108 Thiolase, N-terminal domain M0D48_14380 PF00072 Response regulator receiver domain M0D48_14380 PF00990 Diguanylate cyclase, GGDEF domain M0D48_14395 PF04679 ATP dependent DNA ligase C terminal region M0D48_14395 PF01068 ATP dependent DNA ligase domain M0D48_14395 PF04675 DNA ligase N terminus M0D48_14405 PF04675 DNA ligase N terminus M0D48_14405 PF04679 ATP dependent DNA ligase C terminal region M0D48_14405 PF01068 ATP dependent DNA ligase domain M0D48_14410 PF00271 Helicase conserved C-terminal domain M0D48_14410 PF08494 DEAD/H associated M0D48_14410 PF00270 DEAD/DEAH box helicase M0D48_14420 PF01494 FAD binding domain M0D48_14425 PF01494 FAD binding domain M0D48_14430 PF00313 'Cold-shock' DNA-binding domain M0D48_14435 PF01048 Phosphorylase superfamily M0D48_14440 PF00156 Phosphoribosyl transferase domain M0D48_14445 PF00933 Glycosyl hydrolase family 3 N terminal domain M0D48_14450 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M0D48_14455 PF01593 Flavin containing amine oxidoreductase M0D48_14460 PF01323 DSBA-like thioredoxin domain M0D48_14465 PF01928 CYTH domain M0D48_14470 PF05958 tRNA (Uracil-5-)-methyltransferase M0D48_14480 PF11967 Recombination protein O N terminal M0D48_14480 PF02565 Recombination protein O C terminal M0D48_14485 PF01926 50S ribosome-binding GTPase M0D48_14485 PF07650 KH domain M0D48_14490 PF14622 Ribonuclease-III-like M0D48_14490 PF00035 Double-stranded RNA binding motif M0D48_14500 PF10502 Signal peptidase, peptidase S26 M0D48_14505 PF03144 Elongation factor Tu domain 2 M0D48_14505 PF06421 GTP-binding protein LepA C-terminus M0D48_14505 PF00009 Elongation factor Tu GTP binding domain M0D48_14505 PF00679 Elongation factor G C-terminus M0D48_14510 PF13180 PDZ domain M0D48_14520 PF08281 Sigma-70, region 4 M0D48_14520 PF04542 Sigma-70 region 2 M0D48_14525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M0D48_14525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M0D48_14525 PF00378 Enoyl-CoA hydratase/isomerase M0D48_14530 PF01545 Cation efflux family M0D48_14540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M0D48_14540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M0D48_14545 PF00378 Enoyl-CoA hydratase/isomerase M0D48_14545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M0D48_14545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M0D48_14550 PF00378 Enoyl-CoA hydratase/isomerase M0D48_14555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_14555 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_14555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_14560 PF00171 Aldehyde dehydrogenase family M0D48_14565 PF01381 Helix-turn-helix M0D48_14565 PF06114 IrrE N-terminal-like domain M0D48_14565 PF09856 Predicted transcriptional regulator (DUF2083) M0D48_14575 PF07745 Glycosyl hydrolase family 53 M0D48_14580 PF00703 Glycosyl hydrolases family 2 M0D48_14580 PF02837 Glycosyl hydrolases family 2, sugar binding domain M0D48_14580 PF16355 Domain of unknown function (DUF4982) M0D48_14580 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M0D48_14580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M0D48_14595 PF05192 MutS domain III M0D48_14595 PF05188 MutS domain II M0D48_14595 PF05190 MutS family domain IV M0D48_14595 PF00488 MutS domain V M0D48_14595 PF01624 MutS domain I M0D48_14600 PF00005 ABC transporter M0D48_14605 PF00950 ABC 3 transport family M0D48_14610 PF01297 Zinc-uptake complex component A periplasmic M0D48_14615 PF02492 CobW/HypB/UreG, nucleotide-binding domain M0D48_14615 PF07683 Cobalamin synthesis protein cobW C-terminal domain M0D48_14625 PF07715 TonB-dependent Receptor Plug Domain M0D48_14625 PF00593 TonB dependent receptor M0D48_14645 PF00141 Peroxidase M0D48_14650 PF01479 S4 domain M0D48_14655 PF01554 MatE M0D48_14660 PF01245 Ribosomal protein L19 M0D48_14665 PF01746 tRNA (Guanine-1)-methyltransferase M0D48_14670 PF05239 PRC-barrel domain M0D48_14670 PF01782 RimM N-terminal domain M0D48_14675 PF00886 Ribosomal protein S16 M0D48_14685 PF03060 Nitronate monooxygenase M0D48_14690 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) M0D48_14695 PF00448 SRP54-type protein, GTPase domain M0D48_14695 PF02881 SRP54-type protein, helical bundle domain M0D48_14695 PF02978 Signal peptide binding domain M0D48_14700 PF01578 Cytochrome C assembly protein M0D48_14705 PF01263 Aldose 1-epimerase M0D48_14710 PF06964 Alpha-L-arabinofuranosidase C-terminal domain M0D48_14715 PF03466 LysR substrate binding domain M0D48_14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_14730 PF00072 Response regulator receiver domain M0D48_14735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_14735 PF00072 Response regulator receiver domain M0D48_14735 PF13426 PAS domain M0D48_14740 PF00672 HAMP domain M0D48_14740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_14740 PF00512 His Kinase A (phospho-acceptor) domain M0D48_14740 PF00072 Response regulator receiver domain M0D48_14740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_14740 PF01627 Hpt domain M0D48_14745 PF01739 CheR methyltransferase, SAM binding domain M0D48_14745 PF03705 CheR methyltransferase, all-alpha domain M0D48_14750 PF01339 CheB methylesterase M0D48_14755 PF00990 Diguanylate cyclase, GGDEF domain M0D48_14755 PF00072 Response regulator receiver domain M0D48_14760 PF07237 Protein of unknown function (DUF1428) M0D48_14765 PF00085 Thioredoxin M0D48_14770 PF07715 TonB-dependent Receptor Plug Domain M0D48_14770 PF00593 TonB dependent receptor M0D48_14775 PF04616 Glycosyl hydrolases family 43 M0D48_14775 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain M0D48_14780 PF08448 PAS fold M0D48_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_14780 PF13188 PAS domain M0D48_14780 PF00072 Response regulator receiver domain M0D48_14780 PF00512 His Kinase A (phospho-acceptor) domain M0D48_14785 PF00672 HAMP domain M0D48_14785 PF17149 Periplasmic sensor domain found in signal transduction proteins M0D48_14785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_14785 PF00512 His Kinase A (phospho-acceptor) domain M0D48_14785 PF01627 Hpt domain M0D48_14785 PF00072 Response regulator receiver domain M0D48_14795 PF13581 Histidine kinase-like ATPase domain M0D48_14800 PF01740 STAS domain M0D48_14805 PF08678 Rsbr N terminal M0D48_14805 PF01740 STAS domain M0D48_14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_14815 PF00183 Hsp90 protein M0D48_14820 PF12833 Helix-turn-helix domain M0D48_14830 PF05656 Protein of unknown function (DUF805) M0D48_14835 PF18073 Rubredoxin metal binding domain M0D48_14840 PF00155 Aminotransferase class I and II M0D48_14850 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M0D48_14855 PF00510 Cytochrome c oxidase subunit III M0D48_14860 PF00115 Cytochrome C and Quinol oxidase polypeptide I M0D48_14865 PF06481 COX Aromatic Rich Motif M0D48_14865 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M0D48_14875 PF02401 LytB protein M0D48_14880 PF01252 Signal peptidase (SPase) II M0D48_14885 PF08264 Anticodon-binding domain of tRNA M0D48_14885 PF00133 tRNA synthetases class I (I, L, M and V) M0D48_14885 PF06827 Zinc finger found in FPG and IleRS M0D48_14890 PF06574 FAD synthetase M0D48_14890 PF01687 Riboflavin kinase M0D48_14895 PF03023 Lipid II flippase MurJ M0D48_14900 PF01649 Ribosomal protein S20 M0D48_14910 PF01016 Ribosomal L27 protein M0D48_14915 PF00829 Ribosomal prokaryotic L21 protein M0D48_14920 PF17755 UvrA DNA-binding domain M0D48_14920 PF17760 UvrA interaction domain M0D48_14920 PF00005 ABC transporter M0D48_14935 PF00378 Enoyl-CoA hydratase/isomerase M0D48_14950 PF04542 Sigma-70 region 2 M0D48_14950 PF08281 Sigma-70, region 4 M0D48_14965 PF04377 Arginine-tRNA-protein transferase, C terminus M0D48_14965 PF04376 Arginine-tRNA-protein transferase, N terminus M0D48_14985 PF02222 ATP-grasp domain M0D48_15010 PF13026 Protein of unknown function (DUF3887) M0D48_15010 PF12146 Serine aminopeptidase, S33 M0D48_15030 PF00730 HhH-GPD superfamily base excision DNA repair protein M0D48_15045 PF00196 Bacterial regulatory proteins, luxR family M0D48_15045 PF00072 Response regulator receiver domain M0D48_15050 PF07730 Histidine kinase M0D48_15060 PF03775 Septum formation inhibitor MinC, C-terminal domain M0D48_15060 PF05209 Septum formation inhibitor MinC, N-terminal domain M0D48_15065 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M0D48_15070 PF03776 Septum formation topological specificity factor MinE M0D48_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_15080 PF00512 His Kinase A (phospho-acceptor) domain M0D48_15080 PF08521 Two-component sensor kinase N-terminal M0D48_15085 PF00072 Response regulator receiver domain M0D48_15085 PF00486 Transcriptional regulatory protein, C terminal M0D48_15090 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M0D48_15100 PF00884 Sulfatase M0D48_15100 PF08019 Phosphoethanolamine transferase EptA/EptB M0D48_15115 PF07690 Major Facilitator Superfamily M0D48_15120 PF03412 Peptidase C39 family M0D48_15120 PF00005 ABC transporter M0D48_15120 PF00664 ABC transporter transmembrane region M0D48_15140 PF02347 Glycine cleavage system P-protein M0D48_15145 PF00135 Carboxylesterase family M0D48_15150 PF00248 Aldo/keto reductase family M0D48_15155 PF00199 Catalase M0D48_15155 PF06628 Catalase-related immune-responsive M0D48_15155 PF18011 C-terminal domain found in long catalases M0D48_15180 PF02311 AraC-like ligand binding domain M0D48_15180 PF12833 Helix-turn-helix domain M0D48_15190 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region M0D48_15190 PF07676 WD40-like Beta Propeller Repeat M0D48_15190 PF00326 Prolyl oligopeptidase family M0D48_15200 PF03169 OPT oligopeptide transporter protein M0D48_15225 PF14579 Helix-hairpin-helix motif M0D48_15225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M0D48_15225 PF02811 PHP domain M0D48_15225 PF07733 Bacterial DNA polymerase III alpha NTPase domain M0D48_15240 PF01726 LexA DNA binding domain M0D48_15240 PF00717 Peptidase S24-like M0D48_15275 PF00111 2Fe-2S iron-sulfur cluster binding domain M0D48_15275 PF01799 [2Fe-2S] binding domain M0D48_15280 PF03450 CO dehydrogenase flavoprotein C-terminal domain M0D48_15280 PF00941 FAD binding domain in molybdopterin dehydrogenase M0D48_15285 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M0D48_15285 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M0D48_15295 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_15295 PF00107 Zinc-binding dehydrogenase M0D48_15300 PF17755 UvrA DNA-binding domain M0D48_15320 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_15330 PF07971 Glycosyl hydrolase family 92 M0D48_15330 PF17678 Glycosyl hydrolase family 92 N-terminal domain M0D48_15355 PF00300 Histidine phosphatase superfamily (branch 1) M0D48_15355 PF13456 Reverse transcriptase-like M0D48_15380 PF08463 EcoEI R protein C-terminal M0D48_15380 PF00271 Helicase conserved C-terminal domain M0D48_15380 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M0D48_15380 PF04851 Type III restriction enzyme, res subunit M0D48_15385 PF02661 Fic/DOC family M0D48_15390 PF02384 N-6 DNA Methylase M0D48_15395 PF01420 Type I restriction modification DNA specificity domain M0D48_15410 PF00440 Bacterial regulatory proteins, tetR family M0D48_15430 PF11838 ERAP1-like C-terminal domain M0D48_15430 PF01433 Peptidase family M1 domain M0D48_15435 PF00709 Adenylosuccinate synthetase M0D48_15450 PF01145 SPFH domain / Band 7 family M0D48_15455 PF01145 SPFH domain / Band 7 family M0D48_15455 PF12221 Bacterial membrane protein N terminal M0D48_15460 PF00072 Response regulator receiver domain M0D48_15465 PF00226 DnaJ domain M0D48_15465 PF01556 DnaJ C terminal domain M0D48_15475 PF08534 Redoxin M0D48_15485 PF00912 Transglycosylase M0D48_15485 PF06832 Penicillin-Binding Protein C-terminus Family M0D48_15485 PF00905 Penicillin binding protein transpeptidase domain M0D48_15500 PF00207 Alpha-2-macroglobulin family M0D48_15500 PF07703 Alpha-2-macroglobulin bait region domain M0D48_15500 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain M0D48_15500 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M0D48_15500 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M0D48_15500 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M0D48_15500 PF01835 MG2 domain M0D48_15500 PF17962 Bacterial macroglobulin domain 6 M0D48_15515 PF04303 PrpF protein M0D48_15525 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH M0D48_15530 PF00694 Aconitase C-terminal domain M0D48_15530 PF00330 Aconitase family (aconitate hydratase) M0D48_15535 PF00285 Citrate synthase, C-terminal domain M0D48_15545 PF02954 Bacterial regulatory protein, Fis family M0D48_15545 PF06506 Propionate catabolism activator M0D48_15545 PF00158 Sigma-54 interaction domain M0D48_15565 PF09115 DNA polymerase III, delta subunit, C terminal M0D48_15570 PF02618 YceG-like family M0D48_15575 PF00425 chorismate binding enzyme M0D48_15575 PF04715 Anthranilate synthase component I, N terminal region M0D48_15580 PF02801 Beta-ketoacyl synthase, C-terminal domain M0D48_15580 PF00109 Beta-ketoacyl synthase, N-terminal domain M0D48_15585 PF00550 Phosphopantetheine attachment site M0D48_15595 PF00698 Acyl transferase domain M0D48_15605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M0D48_15605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M0D48_15610 PF01783 Ribosomal L32p protein family M0D48_15615 PF02620 Large ribosomal RNA subunit accumulation protein YceD M0D48_15620 PF02545 Maf-like protein M0D48_15635 PF07726 ATPase family associated with various cellular activities (AAA) M0D48_15635 PF17863 AAA lid domain M0D48_15645 PF13559 Domain of unknown function (DUF4129) M0D48_15645 PF01841 Transglutaminase-like superfamily M0D48_15645 PF11992 Domain of unknown function (DUF3488) M0D48_15655 PF01230 HIT domain M0D48_15660 PF02132 RecR protein M0D48_15660 PF13662 Toprim domain M0D48_15665 PF02575 YbaB/EbfC DNA-binding family M0D48_15670 PF12169 DNA polymerase III subunits gamma and tau domain III M0D48_15670 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M0D48_15670 PF12170 DNA polymerase III tau subunit V interacting with alpha M0D48_15725 PF02391 MoaE protein M0D48_15730 PF02597 ThiS family M0D48_15735 PF01967 MoaC family M0D48_15745 PF04055 Radical SAM superfamily M0D48_15745 PF06463 Molybdenum Cofactor Synthesis C M0D48_15760 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M0D48_15785 PF00929 Exonuclease M0D48_15790 PF00075 RNase H M0D48_15800 PF16123 Hydroxyacylglutathione hydrolase C-terminus M0D48_15800 PF00753 Metallo-beta-lactamase superfamily M0D48_15805 PF05257 CHAP domain M0D48_15805 PF01476 LysM domain M0D48_15830 PF00216 Bacterial DNA-binding protein M0D48_15835 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_15835 PF02190 ATP-dependent protease La (LON) substrate-binding domain M0D48_15835 PF05362 Lon protease (S16) C-terminal proteolytic domain M0D48_15840 PF06689 ClpX C4-type zinc finger M0D48_15840 PF07724 AAA domain (Cdc48 subfamily) M0D48_15840 PF10431 C-terminal, D2-small domain, of ClpB protein M0D48_15845 PF00574 Clp protease M0D48_15850 PF05697 Bacterial trigger factor protein (TF) M0D48_15850 PF05698 Bacterial trigger factor protein (TF) C-terminus M0D48_15860 PF00072 Response regulator receiver domain M0D48_15860 PF13426 PAS domain M0D48_15860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_15895 PF00180 Isocitrate/isopropylmalate dehydrogenase M0D48_15895 PF18324 Hypothetical protein TT1725 M0D48_15905 PF00462 Glutaredoxin M0D48_15910 PF01435 Peptidase family M48 M0D48_15910 PF13181 Tetratricopeptide repeat M0D48_15915 PF00486 Transcriptional regulatory protein, C terminal M0D48_15915 PF00072 Response regulator receiver domain M0D48_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_15920 PF11808 Phosphate regulon sensor protein PhoR M0D48_15920 PF00512 His Kinase A (phospho-acceptor) domain M0D48_15920 PF00989 PAS fold M0D48_15925 PF17941 Polyphosphate kinase C-terminal domain 1 M0D48_15925 PF13090 Polyphosphate kinase C-terminal domain 2 M0D48_15925 PF13089 Polyphosphate kinase N-terminal domain M0D48_15925 PF02503 Polyphosphate kinase middle domain M0D48_15930 PF02541 Ppx/GppA phosphatase family M0D48_15935 PF00534 Glycosyl transferases group 1 M0D48_15935 PF13439 Glycosyltransferase Family 4 M0D48_15940 PF01569 PAP2 superfamily M0D48_15945 PF00149 Calcineurin-like phosphoesterase M0D48_15960 PF04305 Protein of unknown function (DUF455) M0D48_15970 PF00156 Phosphoribosyl transferase domain M0D48_15985 PF08245 Mur ligase middle domain M0D48_15985 PF02875 Mur ligase family, glutamate ligase domain M0D48_16000 PF00300 Histidine phosphatase superfamily (branch 1) M0D48_16005 PF10459 Peptidase S46 M0D48_16010 PF05506 Domain of unknown function (DUF756) M0D48_16010 PF04185 Phosphoesterase family M0D48_16020 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_16020 PF00107 Zinc-binding dehydrogenase M0D48_16030 PF12857 TOBE-like domain M0D48_16030 PF17850 CysA C-terminal regulatory domain M0D48_16030 PF00005 ABC transporter M0D48_16035 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_16040 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_16050 PF00155 Aminotransferase class I and II M0D48_16060 PF00849 RNA pseudouridylate synthase M0D48_16070 PF00691 OmpA family M0D48_16070 PF00223 Photosystem I psaA/psaB protein M0D48_16075 PF00107 Zinc-binding dehydrogenase M0D48_16075 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_16080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M0D48_16080 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_16095 PF00043 Glutathione S-transferase, C-terminal domain M0D48_16095 PF02798 Glutathione S-transferase, N-terminal domain M0D48_16100 PF00056 lactate/malate dehydrogenase, NAD binding domain M0D48_16100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M0D48_16105 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M0D48_16110 PF03144 Elongation factor Tu domain 2 M0D48_16110 PF00679 Elongation factor G C-terminus M0D48_16110 PF00009 Elongation factor Tu GTP binding domain M0D48_16120 PF01425 Amidase M0D48_16130 PF01474 Class-II DAHP synthetase family M0D48_16140 PF02600 Disulfide bond formation protein DsbB M0D48_16145 PF01196 Ribosomal protein L17 M0D48_16150 PF01000 RNA polymerase Rpb3/RpoA insert domain M0D48_16150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M0D48_16150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M0D48_16155 PF00163 Ribosomal protein S4/S9 N-terminal domain M0D48_16155 PF01479 S4 domain M0D48_16160 PF00411 Ribosomal protein S11 M0D48_16165 PF00416 Ribosomal protein S13/S18 M0D48_16170 PF00344 SecY translocase M0D48_16175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M0D48_16180 PF00327 Ribosomal protein L30p/L7e M0D48_16185 PF00333 Ribosomal protein S5, N-terminal domain M0D48_16185 PF03719 Ribosomal protein S5, C-terminal domain M0D48_16190 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M0D48_16195 PF00347 Ribosomal protein L6 M0D48_16200 PF00410 Ribosomal protein S8 M0D48_16205 PF00253 Ribosomal protein S14p/S29e M0D48_16210 PF00281 Ribosomal protein L5 M0D48_16210 PF00673 ribosomal L5P family C-terminus M0D48_16215 PF00467 KOW motif M0D48_16215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M0D48_16220 PF00238 Ribosomal protein L14p/L23e M0D48_16225 PF00366 Ribosomal protein S17 M0D48_16230 PF00831 Ribosomal L29 protein M0D48_16235 PF00252 Ribosomal protein L16p/L10e M0D48_16240 PF07650 KH domain M0D48_16240 PF00189 Ribosomal protein S3, C-terminal domain M0D48_16245 PF00237 Ribosomal protein L22p/L17e M0D48_16250 PF00203 Ribosomal protein S19 M0D48_16255 PF00181 Ribosomal Proteins L2, RNA binding domain M0D48_16255 PF03947 Ribosomal Proteins L2, C-terminal domain M0D48_16260 PF00276 Ribosomal protein L23 M0D48_16265 PF00573 Ribosomal protein L4/L1 family M0D48_16270 PF00297 Ribosomal protein L3 M0D48_16275 PF00338 Ribosomal protein S10p/S20e M0D48_16290 PF03144 Elongation factor Tu domain 2 M0D48_16290 PF03143 Elongation factor Tu C-terminal domain M0D48_16290 PF00009 Elongation factor Tu GTP binding domain M0D48_16295 PF03144 Elongation factor Tu domain 2 M0D48_16295 PF00679 Elongation factor G C-terminus M0D48_16295 PF14492 Elongation Factor G, domain II M0D48_16295 PF03764 Elongation factor G, domain IV M0D48_16295 PF00009 Elongation factor Tu GTP binding domain M0D48_16300 PF00177 Ribosomal protein S7p/S5e M0D48_16305 PF00164 Ribosomal protein S12/S23 M0D48_16310 PF04997 RNA polymerase Rpb1, domain 1 M0D48_16310 PF00623 RNA polymerase Rpb1, domain 2 M0D48_16310 PF04983 RNA polymerase Rpb1, domain 3 M0D48_16310 PF05000 RNA polymerase Rpb1, domain 4 M0D48_16310 PF04998 RNA polymerase Rpb1, domain 5 M0D48_16315 PF04560 RNA polymerase Rpb2, domain 7 M0D48_16315 PF00562 RNA polymerase Rpb2, domain 6 M0D48_16315 PF04565 RNA polymerase Rpb2, domain 3 M0D48_16315 PF04563 RNA polymerase beta subunit M0D48_16315 PF10385 RNA polymerase beta subunit external 1 domain M0D48_16315 PF04561 RNA polymerase Rpb2, domain 2 M0D48_16325 PF00466 Ribosomal protein L10 M0D48_16330 PF00687 Ribosomal protein L1p/L10e family M0D48_16335 PF00298 Ribosomal protein L11, RNA binding domain M0D48_16335 PF03946 Ribosomal protein L11, N-terminal domain M0D48_16340 PF00467 KOW motif M0D48_16340 PF02357 Transcription termination factor nusG M0D48_16345 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M0D48_16355 PF00009 Elongation factor Tu GTP binding domain M0D48_16355 PF03143 Elongation factor Tu C-terminal domain M0D48_16355 PF03144 Elongation factor Tu domain 2 M0D48_16375 PF01926 50S ribosome-binding GTPase M0D48_16375 PF06071 Protein of unknown function (DUF933) M0D48_16380 PF01195 Peptidyl-tRNA hydrolase M0D48_16385 PF01386 Ribosomal L25p family M0D48_16385 PF14693 Ribosomal protein TL5, C-terminal domain M0D48_16390 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M0D48_16390 PF14572 Phosphoribosyl synthetase-associated domain M0D48_16400 PF00288 GHMP kinases N terminal domain M0D48_16400 PF08544 GHMP kinases C terminal M0D48_16405 PF03550 Outer membrane lipoprotein LolB M0D48_16415 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M0D48_16415 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M0D48_16415 PF01488 Shikimate / quinate 5-dehydrogenase M0D48_16420 PF03462 PCRF domain M0D48_16420 PF00472 RF-1 domain M0D48_16430 PF00994 Probable molybdopterin binding domain M0D48_16435 PF03976 Polyphosphate kinase 2 (PPK2) M0D48_16445 PF00708 Acylphosphatase M0D48_16450 PF08534 Redoxin M0D48_16455 PF03631 Virulence factor BrkB M0D48_16460 PF03358 NADPH-dependent FMN reductase M0D48_16475 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain M0D48_16475 PF17189 Glycosyl hydrolase family 30 beta sandwich domain M0D48_16485 PF04073 Aminoacyl-tRNA editing domain M0D48_16490 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_16490 PF00082 Subtilase family M0D48_16495 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_16495 PF00082 Subtilase family M0D48_16500 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_16500 PF00082 Subtilase family M0D48_16505 PF01063 Amino-transferase class IV M0D48_16520 PF02233 NAD(P) transhydrogenase beta subunit M0D48_16525 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M0D48_16545 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M0D48_16545 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M0D48_16545 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M0D48_16570 PF01367 5'-3' exonuclease, C-terminal SAM fold M0D48_16570 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M0D48_16570 PF00476 DNA polymerase family A M0D48_16570 PF01612 3'-5' exonuclease M0D48_16575 PF00293 NUDIX domain M0D48_16585 PF00561 alpha/beta hydrolase fold M0D48_16605 PF05175 Methyltransferase small domain M0D48_16605 PF17827 PrmC N-terminal domain M0D48_16610 PF00578 AhpC/TSA family M0D48_16610 PF10417 C-terminal domain of 1-Cys peroxiredoxin M0D48_16615 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_16615 PF13192 Thioredoxin domain M0D48_16620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_16620 PF03466 LysR substrate binding domain M0D48_16630 PF01272 Transcription elongation factor, GreA/GreB, C-term M0D48_16630 PF14760 Rnk N-terminus M0D48_16635 PF00923 Transaldolase/Fructose-6-phosphate aldolase M0D48_16645 PF01625 Peptide methionine sulfoxide reductase M0D48_16655 PF00196 Bacterial regulatory proteins, luxR family M0D48_16655 PF00072 Response regulator receiver domain M0D48_16660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_16660 PF01627 Hpt domain M0D48_16660 PF00512 His Kinase A (phospho-acceptor) domain M0D48_16660 PF00672 HAMP domain M0D48_16660 PF00072 Response regulator receiver domain M0D48_16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_16665 PF00072 Response regulator receiver domain M0D48_16665 PF00990 Diguanylate cyclase, GGDEF domain M0D48_16680 PF00749 tRNA synthetases class I (E and Q), catalytic domain M0D48_16680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M0D48_16685 PF00892 EamA-like transporter family M0D48_16700 PF01728 FtsJ-like methyltransferase M0D48_16700 PF18125 RlmM ferredoxin-like domain M0D48_16705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M0D48_16705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M0D48_16730 PF00378 Enoyl-CoA hydratase/isomerase M0D48_16735 PF00171 Aldehyde dehydrogenase family M0D48_16740 PF00501 AMP-binding enzyme M0D48_16740 PF13193 AMP-binding enzyme C-terminal domain M0D48_16745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_16745 PF03466 LysR substrate binding domain M0D48_16750 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit M0D48_16750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M0D48_16755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M0D48_16760 PF07729 FCD domain M0D48_16760 PF00392 Bacterial regulatory proteins, gntR family M0D48_16775 PF12697 Alpha/beta hydrolase family M0D48_16780 PF01494 FAD binding domain M0D48_16785 PF01494 FAD binding domain M0D48_16800 PF01923 Cobalamin adenosyltransferase M0D48_16805 PF00850 Histone deacetylase domain M0D48_16810 PF04453 LPS transport system D M0D48_16810 PF03968 OstA-like protein M0D48_16815 PF00639 PPIC-type PPIASE domain M0D48_16815 PF09312 SurA N-terminal domain M0D48_16820 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M0D48_16825 PF00398 Ribosomal RNA adenine dimethylase M0D48_16830 PF04379 ApaG domain M0D48_16835 PF00149 Calcineurin-like phosphoesterase M0D48_16840 PF00186 Dihydrofolate reductase M0D48_16850 PF00303 Thymidylate synthase M0D48_16855 PF01790 Prolipoprotein diacylglyceryl transferase M0D48_16875 PF01219 Prokaryotic diacylglycerol kinase M0D48_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_16885 PF00512 His Kinase A (phospho-acceptor) domain M0D48_16885 PF08521 Two-component sensor kinase N-terminal M0D48_16890 PF00072 Response regulator receiver domain M0D48_16890 PF00486 Transcriptional regulatory protein, C terminal M0D48_16895 PF13472 GDSL-like Lipase/Acylhydrolase family M0D48_16900 PF00005 ABC transporter M0D48_16910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M0D48_16920 PF00005 ABC transporter M0D48_16925 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_16945 PF07715 TonB-dependent Receptor Plug Domain M0D48_16945 PF00593 TonB dependent receptor M0D48_16955 PF00248 Aldo/keto reductase family M0D48_16960 PF07670 Nucleoside recognition M0D48_16960 PF07662 Na+ dependent nucleoside transporter C-terminus M0D48_16960 PF01773 Na+ dependent nucleoside transporter N-terminus M0D48_16965 PF00294 pfkB family carbohydrate kinase M0D48_16980 PF01207 Dihydrouridine synthase (Dus) M0D48_16985 PF13649 Methyltransferase domain M0D48_16995 PF00438 S-adenosylmethionine synthetase, N-terminal domain M0D48_16995 PF02773 S-adenosylmethionine synthetase, C-terminal domain M0D48_16995 PF02772 S-adenosylmethionine synthetase, central domain M0D48_17000 PF00328 Histidine phosphatase superfamily (branch 2) M0D48_17035 PF00311 Phosphoenolpyruvate carboxylase M0D48_17045 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M0D48_17045 PF05221 S-adenosyl-L-homocysteine hydrolase M0D48_17050 PF13649 Methyltransferase domain M0D48_17060 PF00685 Sulfotransferase domain M0D48_17090 PF00128 Alpha amylase, catalytic domain M0D48_17095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M0D48_17105 PF00082 Subtilase family M0D48_17105 PF09286 Pro-kumamolisin, activation domain M0D48_17110 PF14765 Polyketide synthase dehydratase M0D48_17110 PF00550 Phosphopantetheine attachment site M0D48_17110 PF08659 KR domain M0D48_17110 PF02801 Beta-ketoacyl synthase, C-terminal domain M0D48_17110 PF00109 Beta-ketoacyl synthase, N-terminal domain M0D48_17110 PF16197 Ketoacyl-synthetase C-terminal extension M0D48_17110 PF00107 Zinc-binding dehydrogenase M0D48_17110 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_17110 PF00698 Acyl transferase domain M0D48_17120 PF02219 Methylenetetrahydrofolate reductase M0D48_17130 PF00293 NUDIX domain M0D48_17140 PF01043 SecA preprotein cross-linking domain M0D48_17140 PF07517 SecA DEAD-like domain M0D48_17140 PF07516 SecA Wing and Scaffold domain M0D48_17140 PF02810 SEC-C motif M0D48_17145 PF01551 Peptidase family M23 M0D48_17145 PF08525 Opacity-associated protein A N-terminal motif M0D48_17145 PF01476 LysM domain M0D48_17155 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M0D48_17160 PF00091 Tubulin/FtsZ family, GTPase domain M0D48_17160 PF12327 FtsZ family, C-terminal domain M0D48_17165 PF02491 SHS2 domain inserted in FTSA M0D48_17170 PF03799 Cell division protein FtsQ M0D48_17170 PF08478 POTRA domain, FtsQ-type M0D48_17175 PF07478 D-ala D-ala ligase C-terminus M0D48_17175 PF01820 D-ala D-ala ligase N-terminus M0D48_17180 PF01225 Mur ligase family, catalytic domain M0D48_17180 PF02875 Mur ligase family, glutamate ligase domain M0D48_17180 PF08245 Mur ligase middle domain M0D48_17185 PF04101 Glycosyltransferase family 28 C-terminal domain M0D48_17185 PF03033 Glycosyltransferase family 28 N-terminal domain M0D48_17190 PF01098 Cell cycle protein M0D48_17195 PF00953 Glycosyl transferase family 4 M0D48_17200 PF08245 Mur ligase middle domain M0D48_17200 PF01225 Mur ligase family, catalytic domain M0D48_17200 PF02875 Mur ligase family, glutamate ligase domain M0D48_17205 PF01225 Mur ligase family, catalytic domain M0D48_17205 PF02875 Mur ligase family, glutamate ligase domain M0D48_17205 PF08245 Mur ligase middle domain M0D48_17210 PF03717 Penicillin-binding Protein dimerisation domain M0D48_17210 PF00905 Penicillin binding protein transpeptidase domain M0D48_17215 PF04999 Cell division protein FtsL M0D48_17220 PF01795 MraW methylase family M0D48_17225 PF02381 MraZ protein, putative antitoxin-like M0D48_17250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M0D48_17260 PF02021 Uncharacterised protein family UPF0102 M0D48_17265 PF04307 LexA-binding, inner membrane-associated putative hydrolase M0D48_17270 PF02913 FAD linked oxidases, C-terminal domain M0D48_17270 PF01565 FAD binding domain M0D48_17285 PF00486 Transcriptional regulatory protein, C terminal M0D48_17285 PF00072 Response regulator receiver domain M0D48_17290 PF02702 Osmosensitive K+ channel His kinase sensor domain M0D48_17290 PF00512 His Kinase A (phospho-acceptor) domain M0D48_17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_17290 PF13492 GAF domain M0D48_17290 PF13493 Domain of unknown function (DUF4118) M0D48_17295 PF02669 K+-transporting ATPase, c chain M0D48_17305 PF03814 Potassium-transporting ATPase A subunit M0D48_17325 PF00586 AIR synthase related protein, N-terminal domain M0D48_17325 PF02769 AIR synthase related protein, C-terminal domain M0D48_17330 PF01029 NusB family M0D48_17335 PF00885 6,7-dimethyl-8-ribityllumazine synthase M0D48_17340 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M0D48_17340 PF00925 GTP cyclohydrolase II M0D48_17345 PF00677 Lumazine binding domain M0D48_17355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M0D48_17355 PF01872 RibD C-terminal domain M0D48_17365 PF03477 ATP cone domain M0D48_17370 PF00464 Serine hydroxymethyltransferase M0D48_17385 PF00005 ABC transporter M0D48_17385 PF12848 ABC transporter M0D48_17390 PF01327 Polypeptide deformylase M0D48_17400 PF03960 ArsC family M0D48_17415 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M0D48_17415 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M0D48_17450 PF07715 TonB-dependent Receptor Plug Domain M0D48_17450 PF00593 TonB dependent receptor M0D48_17460 PF00392 Bacterial regulatory proteins, gntR family M0D48_17460 PF07702 UTRA domain M0D48_17470 PF03958 Bacterial type II/III secretion system short domain M0D48_17470 PF00263 Bacterial type II and III secretion system protein M0D48_17480 PF10741 Type II secretion system (T2SS), protein M subtype b M0D48_17485 PF05137 Fimbrial assembly protein (PilN) M0D48_17490 PF03934 Type II secretion system (T2SS), protein K M0D48_17500 PF07963 Prokaryotic N-terminal methylation motif M0D48_17505 PF12019 Type II transport protein GspH M0D48_17510 PF08334 Type II secretion system (T2SS), protein G M0D48_17515 PF00482 Type II secretion system (T2SS), protein F M0D48_17520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M0D48_17520 PF00437 Type II/IV secretion system protein M0D48_17525 PF04151 Bacterial pre-peptidase C-terminal domain M0D48_17525 PF00082 Subtilase family M0D48_17530 PF05662 Coiled stalk of trimeric autotransporter adhesin M0D48_17530 PF13018 Extended Signal Peptide of Type V secretion system M0D48_17530 PF05658 Head domain of trimeric autotransporter adhesin M0D48_17530 PF03895 YadA-like membrane anchor domain M0D48_17540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M0D48_17540 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M0D48_17540 PF02769 AIR synthase related protein, C-terminal domain M0D48_17545 PF13098 Thioredoxin-like domain M0D48_17545 PF10411 Disulfide bond isomerase protein N-terminus M0D48_17550 PF02899 Phage integrase, N-terminal SAM-like domain M0D48_17550 PF00589 Phage integrase family M0D48_17570 PF03739 Lipopolysaccharide export system permease LptF/LptG M0D48_17580 PF02789 Cytosol aminopeptidase family, N-terminal domain M0D48_17580 PF00883 Cytosol aminopeptidase family, catalytic domain M0D48_17595 PF10458 Valyl tRNA synthetase tRNA binding arm M0D48_17595 PF00133 tRNA synthetases class I (I, L, M and V) M0D48_17595 PF08264 Anticodon-binding domain of tRNA M0D48_17600 PF00593 TonB dependent receptor M0D48_17600 PF07715 TonB-dependent Receptor Plug Domain M0D48_17605 PF01464 Transglycosylase SLT domain M0D48_17605 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M0D48_17610 PF12627 Probable RNA and SrmB- binding site of polymerase A M0D48_17610 PF01743 Poly A polymerase head domain M0D48_17610 PF01966 HD domain M0D48_17625 PF01522 Polysaccharide deacetylase M0D48_17625 PF14883 Hypothetical glycosyl hydrolase family 13 M0D48_17630 PF00535 Glycosyl transferase family 2 M0D48_17645 PF01979 Amidohydrolase family M0D48_17650 PF01380 SIS domain M0D48_17655 PF00356 Bacterial regulatory proteins, lacI family M0D48_17660 PF07690 Major Facilitator Superfamily M0D48_17665 PF00392 Bacterial regulatory proteins, gntR family M0D48_17665 PF07702 UTRA domain M0D48_17680 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M0D48_17680 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M0D48_17680 PF00703 Glycosyl hydrolases family 2 M0D48_17680 PF16355 Domain of unknown function (DUF4982) M0D48_17680 PF02837 Glycosyl hydrolases family 2, sugar binding domain M0D48_17705 PF03934 Type II secretion system (T2SS), protein K M0D48_17710 PF11612 Type II secretion system (T2SS), protein J M0D48_17710 PF07963 Prokaryotic N-terminal methylation motif M0D48_17715 PF02501 Type II secretion system (T2SS), protein I M0D48_17715 PF07963 Prokaryotic N-terminal methylation motif M0D48_17720 PF07963 Prokaryotic N-terminal methylation motif M0D48_17720 PF12019 Type II transport protein GspH M0D48_17725 PF07963 Prokaryotic N-terminal methylation motif M0D48_17725 PF08334 Type II secretion system (T2SS), protein G M0D48_17730 PF00482 Type II secretion system (T2SS), protein F M0D48_17735 PF00437 Type II/IV secretion system protein M0D48_17740 PF00263 Bacterial type II and III secretion system protein M0D48_17740 PF03958 Bacterial type II/III secretion system short domain M0D48_17780 PF00106 short chain dehydrogenase M0D48_17785 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M0D48_17790 PF00512 His Kinase A (phospho-acceptor) domain M0D48_17790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_17795 PF00072 Response regulator receiver domain M0D48_17800 PF01590 GAF domain M0D48_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_17800 PF00512 His Kinase A (phospho-acceptor) domain M0D48_17800 PF08446 PAS fold M0D48_17800 PF00360 Phytochrome region M0D48_17805 PF04972 BON domain M0D48_17810 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M0D48_17810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M0D48_17815 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M0D48_17815 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M0D48_17850 PF01467 Cytidylyltransferase-like M0D48_17850 PF00293 NUDIX domain M0D48_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_17860 PF03466 LysR substrate binding domain M0D48_17870 PF11818 C-terminal domain of tail specific protease (DUF3340) M0D48_17870 PF00595 PDZ domain M0D48_17870 PF03572 Peptidase family S41 M0D48_17870 PF17804 Tail specific protease N-terminal domain M0D48_17875 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M0D48_17875 PF04055 Radical SAM superfamily M0D48_17880 PF03099 Biotin/lipoate A/B protein ligase family M0D48_17885 PF04359 Protein of unknown function (DUF493) M0D48_17895 PF00768 D-alanyl-D-alanine carboxypeptidase M0D48_17895 PF07943 Penicillin-binding protein 5, C-terminal domain M0D48_17900 PF03330 Lytic transglycolase M0D48_17900 PF05036 Sporulation related domain M0D48_17905 PF13406 Transglycosylase SLT domain M0D48_17910 PF00295 Glycosyl hydrolases family 28 M0D48_17920 PF01098 Cell cycle protein M0D48_17925 PF03717 Penicillin-binding Protein dimerisation domain M0D48_17925 PF00905 Penicillin binding protein transpeptidase domain M0D48_17935 PF04085 rod shape-determining protein MreC M0D48_17950 PF00294 pfkB family carbohydrate kinase M0D48_17965 PF00158 Sigma-54 interaction domain M0D48_17965 PF02954 Bacterial regulatory protein, Fis family M0D48_17965 PF01590 GAF domain M0D48_17975 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_17975 PF00107 Zinc-binding dehydrogenase M0D48_17990 PF00497 Bacterial extracellular solute-binding proteins, family 3 M0D48_17995 PF13360 PQQ-like domain M0D48_18010 PF11838 ERAP1-like C-terminal domain M0D48_18010 PF01433 Peptidase family M1 domain M0D48_18015 PF00563 EAL domain M0D48_18015 PF00990 Diguanylate cyclase, GGDEF domain M0D48_18015 PF03707 Bacterial signalling protein N terminal repeat M0D48_18020 PF01209 ubiE/COQ5 methyltransferase family M0D48_18030 PF13533 Biotin-lipoyl like M0D48_18035 PF13673 Acetyltransferase (GNAT) domain M0D48_18045 PF00004 ATPase family associated with various cellular activities (AAA) M0D48_18045 PF07724 AAA domain (Cdc48 subfamily) M0D48_18045 PF10431 C-terminal, D2-small domain, of ClpB protein M0D48_18050 PF00227 Proteasome subunit M0D48_18055 PF02899 Phage integrase, N-terminal SAM-like domain M0D48_18055 PF00589 Phage integrase family M0D48_18065 PF01678 Diaminopimelate epimerase M0D48_18075 PF04304 Protein of unknown function (DUF454) M0D48_18080 PF00326 Prolyl oligopeptidase family M0D48_18080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M0D48_18085 PF00155 Aminotransferase class I and II M0D48_18100 PF00326 Prolyl oligopeptidase family M0D48_18100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M0D48_18125 PF03900 Porphobilinogen deaminase, C-terminal domain M0D48_18125 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M0D48_18130 PF04397 LytTr DNA-binding domain M0D48_18130 PF00072 Response regulator receiver domain M0D48_18135 PF06580 Histidine kinase M0D48_18135 PF07694 5TMR of 5TMR-LYT M0D48_18145 PF13632 Glycosyl transferase family group 2 M0D48_18155 PF00990 Diguanylate cyclase, GGDEF domain M0D48_18160 PF01740 STAS domain M0D48_18160 PF00916 Sulfate permease family M0D48_18165 PF00553 Cellulose binding domain M0D48_18165 PF00150 Cellulase (glycosyl hydrolase family 5) M0D48_18170 PF02203 Tar ligand binding domain homologue M0D48_18170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M0D48_18170 PF00672 HAMP domain M0D48_18185 PF03707 Bacterial signalling protein N terminal repeat M0D48_18185 PF00990 Diguanylate cyclase, GGDEF domain M0D48_18185 PF00563 EAL domain M0D48_18220 PF01204 Trehalase M0D48_18235 PF01544 CorA-like Mg2+ transporter protein M0D48_18245 PF00324 Amino acid permease M0D48_18255 PF00553 Cellulose binding domain M0D48_18255 PF01341 Glycosyl hydrolases family 6 M0D48_18255 PF00041 Fibronectin type III domain M0D48_18260 PF03330 Lytic transglycolase M0D48_18265 PF00892 EamA-like transporter family M0D48_18285 PF00990 Diguanylate cyclase, GGDEF domain M0D48_18290 PF07759 Protein of unknown function (DUF1615) M0D48_18330 PF13409 Glutathione S-transferase, N-terminal domain M0D48_18340 PF00106 short chain dehydrogenase M0D48_18385 PF00580 UvrD/REP helicase N-terminal domain M0D48_18385 PF13361 UvrD-like helicase C-terminal domain M0D48_18430 PF13276 HTH-like domain M0D48_18430 PF13333 Integrase core domain M0D48_18430 PF00665 Integrase core domain M0D48_18435 PF01527 Transposase M0D48_18440 PF02374 Anion-transporting ATPase M0D48_18450 PF17831 Pyruvate dehydrogenase E1 component middle domain M0D48_18450 PF00456 Transketolase, thiamine diphosphate binding domain M0D48_18455 PF07745 Glycosyl hydrolase family 53 M0D48_18490 PF07729 FCD domain M0D48_18490 PF00392 Bacterial regulatory proteins, gntR family M0D48_18500 PF00698 Acyl transferase domain M0D48_18505 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M0D48_18510 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG M0D48_18520 PF01039 Carboxyl transferase domain M0D48_18525 PF06857 Malonate decarboxylase delta subunit (MdcD) M0D48_18535 PF03551 Transcriptional regulator PadR-like family M0D48_18535 PF13847 Methyltransferase domain M0D48_18560 PF12680 SnoaL-like domain M0D48_18560 PF04542 Sigma-70 region 2 M0D48_18560 PF08281 Sigma-70, region 4 M0D48_18565 PF04264 YceI-like domain M0D48_18570 PF00881 Nitroreductase family M0D48_18595 PF02592 Putative vitamin uptake transporter M0D48_18600 PF08335 GlnD PII-uridylyltransferase M0D48_18600 PF03710 Glutamate-ammonia ligase adenylyltransferase M0D48_18610 PF08450 SMP-30/Gluconolactonase/LRE-like region M0D48_18625 PF00793 DAHP synthetase I family M0D48_18635 PF07715 TonB-dependent Receptor Plug Domain M0D48_18635 PF00593 TonB dependent receptor M0D48_18640 PF01609 Transposase DDE domain M0D48_18640 PF05598 Transposase domain (DUF772) M0D48_18675 PF00118 TCP-1/cpn60 chaperonin family M0D48_18680 PF00166 Chaperonin 10 Kd subunit M0D48_18685 PF04231 Endonuclease I M0D48_18690 PF03091 CutA1 divalent ion tolerance protein M0D48_18700 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M0D48_18700 PF00326 Prolyl oligopeptidase family M0D48_18705 PF01220 Dehydroquinase class II M0D48_18710 PF00364 Biotin-requiring enzyme M0D48_18720 PF02785 Biotin carboxylase C-terminal domain M0D48_18720 PF00289 Biotin carboxylase, N-terminal domain M0D48_18720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M0D48_18755 PF01381 Helix-turn-helix M0D48_18765 PF02954 Bacterial regulatory protein, Fis family M0D48_18770 PF00818 Ice nucleation protein repeat M0D48_18770 PF00818 Ice nucleation protein repeat M0D48_18780 PF01808 AICARFT/IMPCHase bienzyme M0D48_18780 PF02142 MGS-like domain M0D48_18785 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M0D48_18785 PF02843 Phosphoribosylglycinamide synthetase, C domain M0D48_18785 PF02844 Phosphoribosylglycinamide synthetase, N domain M0D48_18790 PF12805 FUSC-like inner membrane protein yccS M0D48_18795 PF07690 Major Facilitator Superfamily M0D48_18800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_18800 PF03466 LysR substrate binding domain M0D48_18805 PF07690 Major Facilitator Superfamily M0D48_18820 PF17113 Regulatory signalling modulator protein AmpE M0D48_18820 PF03186 CobD/Cbib protein M0D48_18825 PF00293 NUDIX domain M0D48_18825 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain M0D48_18825 PF09297 NADH pyrophosphatase zinc ribbon domain M0D48_18835 PF01521 Iron-sulphur cluster biosynthesis M0D48_18855 PF00563 EAL domain M0D48_18855 PF00990 Diguanylate cyclase, GGDEF domain M0D48_18855 PF03707 Bacterial signalling protein N terminal repeat M0D48_18860 PF00672 HAMP domain M0D48_18860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_18860 PF01627 Hpt domain M0D48_18860 PF00072 Response regulator receiver domain M0D48_18860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M0D48_18860 PF00512 His Kinase A (phospho-acceptor) domain M0D48_18865 PF00210 Ferritin-like domain M0D48_18875 PF00293 NUDIX domain M0D48_18890 PF00380 Ribosomal protein S9/S16 M0D48_18895 PF00572 Ribosomal protein L13 M0D48_18900 PF03232 Ubiquinone biosynthesis protein COQ7 M0D48_18905 PF00893 Small Multidrug Resistance protein M0D48_18910 PF02675 S-adenosylmethionine decarboxylase M0D48_18915 PF00325 Bacterial regulatory proteins, crp family M0D48_18915 PF00027 Cyclic nucleotide-binding domain M0D48_18925 PF00218 Indole-3-glycerol phosphate synthase M0D48_18930 PF00591 Glycosyl transferase family, a/b domain M0D48_18930 PF02885 Glycosyl transferase family, helical bundle domain M0D48_18940 PF00117 Glutamine amidotransferase class-I M0D48_18955 PF04715 Anthranilate synthase component I, N terminal region M0D48_18955 PF00425 chorismate binding enzyme M0D48_18960 PF00781 Diacylglycerol kinase catalytic domain M0D48_18965 PF00583 Acetyltransferase (GNAT) family M0D48_18970 PF00834 Ribulose-phosphate 3 epimerase family M0D48_18980 PF05099 Tellurite resistance protein TerB M0D48_18980 PF00226 DnaJ domain M0D48_18985 PF01259 SAICAR synthetase M0D48_19000 PF07504 Fungalysin/Thermolysin Propeptide Motif M0D48_19000 PF01483 Proprotein convertase P-domain M0D48_19000 PF01447 Thermolysin metallopeptidase, catalytic domain M0D48_19000 PF02868 Thermolysin metallopeptidase, alpha-helical domain M0D48_19020 PF13244 Domain of unknown function (DUF4040) M0D48_19020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter M0D48_19020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M0D48_19020 PF00361 Proton-conducting membrane transporter M0D48_19025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M0D48_19030 PF00361 Proton-conducting membrane transporter M0D48_19040 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) M0D48_19045 PF03334 Na+/H+ antiporter subunit M0D48_19065 PF04209 homogentisate 1,2-dioxygenase M0D48_19070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M0D48_19075 PF01047 MarR family M0D48_19085 PF00854 POT family M0D48_19090 PF03301 Tryptophan 2,3-dioxygenase M0D48_19100 PF00676 Dehydrogenase E1 component M0D48_19105 PF02780 Transketolase, C-terminal domain M0D48_19105 PF02779 Transketolase, pyrimidine binding domain M0D48_19115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M0D48_19115 PF00364 Biotin-requiring enzyme M0D48_19115 PF02817 e3 binding domain M0D48_19125 PF00270 DEAD/DEAH box helicase M0D48_19125 PF00271 Helicase conserved C-terminal domain M0D48_19135 PF06903 VirK protein M0D48_19165 PF13460 NAD(P)H-binding M0D48_19170 PF00128 Alpha amylase, catalytic domain M0D48_19170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M0D48_19180 PF00128 Alpha amylase, catalytic domain M0D48_19185 PF02446 4-alpha-glucanotransferase M0D48_19190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M0D48_19190 PF11941 Domain of unknown function (DUF3459) M0D48_19190 PF00128 Alpha amylase, catalytic domain M0D48_19195 PF02806 Alpha amylase, C-terminal all-beta domain M0D48_19195 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M0D48_19195 PF00128 Alpha amylase, catalytic domain M0D48_19200 PF08323 Starch synthase catalytic domain M0D48_19200 PF00534 Glycosyl transferases group 1 M0D48_19205 PF00990 Diguanylate cyclase, GGDEF domain M0D48_19210 PF02638 Glycosyl hydrolase-like 10 M0D48_19215 PF05661 Protein of unknown function (DUF808) M0D48_19220 PF03109 ABC1 family M0D48_19225 PF00884 Sulfatase M0D48_19230 PF00924 Mechanosensitive ion channel M0D48_19230 PF12795 Mechanosensitive ion channel porin domain M0D48_19230 PF12794 Mechanosensitive ion channel inner membrane domain 1 M0D48_19250 PF01464 Transglycosylase SLT domain M0D48_19260 PF03958 Bacterial type II/III secretion system short domain M0D48_19260 PF00263 Bacterial type II and III secretion system protein M0D48_19265 PF01311 Bacterial export proteins, family 1 M0D48_19275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M0D48_19275 PF02874 ATP synthase alpha/beta family, beta-barrel domain M0D48_19275 PF18269 T3SS EscN ATPase C-terminal domain M0D48_19290 PF01514 Secretory protein of YscJ/FliF family M0D48_19305 PF01312 FlhB HrpN YscU SpaS Family M0D48_19310 PF00771 FHIPEP family M0D48_19325 PF00813 FliP family M0D48_19330 PF01313 Bacterial export proteins, family 3 M0D48_19370 PF05819 NolX protein M0D48_19385 PF01040 UbiA prenyltransferase family M0D48_19395 PF06968 Biotin and Thiamin Synthesis associated domain M0D48_19395 PF04055 Radical SAM superfamily M0D48_19400 PF00155 Aminotransferase class I and II M0D48_19410 PF12697 Alpha/beta hydrolase family M0D48_19420 PF13649 Methyltransferase domain M0D48_19440 PF00291 Pyridoxal-phosphate dependent enzyme M0D48_19455 PF01134 Glucose inhibited division protein A M0D48_19455 PF13932 GidA associated domain M0D48_19465 PF07859 alpha/beta hydrolase fold M0D48_19475 PF09339 IclR helix-turn-helix domain M0D48_19475 PF01614 Bacterial transcriptional regulator M0D48_19490 PF02627 Carboxymuconolactone decarboxylase family M0D48_19495 PF12146 Serine aminopeptidase, S33 M0D48_19500 PF10397 Adenylosuccinate lyase C-terminus M0D48_19500 PF00206 Lyase M0D48_19510 PF00775 Dioxygenase M0D48_19510 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal M0D48_19515 PF02803 Thiolase, C-terminal domain M0D48_19515 PF00108 Thiolase, N-terminal domain M0D48_19520 PF01144 Coenzyme A transferase M0D48_19525 PF01144 Coenzyme A transferase M0D48_19530 PF00355 Rieske [2Fe-2S] domain M0D48_19535 PF00970 Oxidoreductase FAD-binding domain M0D48_19535 PF00111 2Fe-2S iron-sulfur cluster binding domain M0D48_19545 PF00455 DeoR C terminal sensor domain M0D48_19545 PF08220 DeoR-like helix-turn-helix domain M0D48_19550 PF01266 FAD dependent oxidoreductase M0D48_19550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M0D48_19555 PF00230 Major intrinsic protein M0D48_19560 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M0D48_19560 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M0D48_19570 PF01494 FAD binding domain M0D48_19580 PF00171 Aldehyde dehydrogenase family M0D48_19600 PF01966 HD domain M0D48_19600 PF11871 Domain of unknown function (DUF3391) M0D48_19605 PF07690 Major Facilitator Superfamily M0D48_19615 PF00132 Bacterial transferase hexapeptide (six repeats) M0D48_19620 PF03692 Putative zinc- or iron-chelating domain M0D48_19625 PF00920 Dehydratase family M0D48_19630 PF13495 Phage integrase, N-terminal SAM-like domain M0D48_19630 PF00589 Phage integrase family M0D48_19670 PF01638 HxlR-like helix-turn-helix M0D48_19675 PF05368 NmrA-like family M0D48_19685 PF03812 2-keto-3-deoxygluconate permease M0D48_19690 PF08267 Cobalamin-independent synthase, N-terminal domain M0D48_19690 PF01717 Cobalamin-independent synthase, Catalytic domain M0D48_19700 PF03358 NADPH-dependent FMN reductase M0D48_19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_19705 PF03466 LysR substrate binding domain M0D48_19710 PF02677 Epoxyqueuosine reductase QueH M0D48_19745 PF00551 Formyl transferase M0D48_19760 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M0D48_19760 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M0D48_19765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M0D48_19770 PF02146 Sir2 family M0D48_19775 PF00561 alpha/beta hydrolase fold M0D48_19790 PF07690 Major Facilitator Superfamily M0D48_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_19795 PF03466 LysR substrate binding domain M0D48_19800 PF01026 TatD related DNase M0D48_19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_19805 PF03466 LysR substrate binding domain M0D48_19810 PF00355 Rieske [2Fe-2S] domain M0D48_19815 PF00111 2Fe-2S iron-sulfur cluster binding domain M0D48_19815 PF00175 Oxidoreductase NAD-binding domain M0D48_19820 PF00860 Permease family M0D48_19830 PF01156 Inosine-uridine preferring nucleoside hydrolase M0D48_19840 PF01425 Amidase M0D48_19865 PF00561 alpha/beta hydrolase fold M0D48_19870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_19870 PF03466 LysR substrate binding domain M0D48_19875 PF07687 Peptidase dimerisation domain M0D48_19875 PF01546 Peptidase family M20/M25/M40 M0D48_19880 PF00266 Aminotransferase class-V M0D48_19895 PF09349 OHCU decarboxylase M0D48_19895 PF01014 Uricase M0D48_19900 PF13454 FAD-NAD(P)-binding M0D48_19905 PF00576 HIUase/Transthyretin family M0D48_19910 PF07308 Protein of unknown function (DUF1456) M0D48_19920 PF04408 Helicase associated domain (HA2) M0D48_19920 PF00271 Helicase conserved C-terminal domain M0D48_19920 PF00270 DEAD/DEAH box helicase M0D48_19920 PF08482 ATP-dependent helicase C-terminal M0D48_19930 PF00849 RNA pseudouridylate synthase M0D48_19940 PF00248 Aldo/keto reductase family M0D48_19945 PF00107 Zinc-binding dehydrogenase M0D48_19945 PF16884 N-terminal domain of oxidoreductase M0D48_19950 PF00248 Aldo/keto reductase family M0D48_19970 PF02566 OsmC-like protein M0D48_19975 PF01047 MarR family M0D48_19980 PF03969 AFG1-like ATPase M0D48_20000 PF02492 CobW/HypB/UreG, nucleotide-binding domain M0D48_20000 PF07683 Cobalamin synthesis protein cobW C-terminal domain M0D48_20055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M0D48_20055 PF02770 Acyl-CoA dehydrogenase, middle domain M0D48_20055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M0D48_20060 PF01039 Carboxyl transferase domain M0D48_20065 PF18140 Propionyl-coenzyme A carboxylase BT domain M0D48_20065 PF00364 Biotin-requiring enzyme M0D48_20065 PF00289 Biotin carboxylase, N-terminal domain M0D48_20065 PF02785 Biotin carboxylase C-terminal domain M0D48_20065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M0D48_20070 PF00326 Prolyl oligopeptidase family M0D48_20090 PF00990 Diguanylate cyclase, GGDEF domain M0D48_20095 PF00463 Isocitrate lyase family M0D48_20100 PF01274 Malate synthase M0D48_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_20105 PF03466 LysR substrate binding domain M0D48_20110 PF00999 Sodium/hydrogen exchanger family M0D48_20130 PF12706 Beta-lactamase superfamily domain M0D48_20140 PF10502 Signal peptidase, peptidase S26 M0D48_20145 PF01432 Peptidase family M3 M0D48_20150 PF01112 Asparaginase M0D48_20160 PF00472 RF-1 domain M0D48_20170 PF00849 RNA pseudouridylate synthase M0D48_20185 PF03109 ABC1 family M0D48_20195 PF07478 D-ala D-ala ligase C-terminus M0D48_20195 PF01820 D-ala D-ala ligase N-terminus M0D48_20205 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family M0D48_20210 PF00501 AMP-binding enzyme M0D48_20215 PF03692 Putative zinc- or iron-chelating domain M0D48_20220 PF00561 alpha/beta hydrolase fold M0D48_20225 PF02661 Fic/DOC family M0D48_20225 PF13784 Fic/DOC family N-terminal M0D48_20230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M0D48_20230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M0D48_20245 PF00588 SpoU rRNA Methylase family M0D48_20250 PF07690 Major Facilitator Superfamily M0D48_20265 PF02954 Bacterial regulatory protein, Fis family M0D48_20265 PF00072 Response regulator receiver domain M0D48_20265 PF00158 Sigma-54 interaction domain M0D48_20270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_20275 PF00205 Thiamine pyrophosphate enzyme, central domain M0D48_20275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M0D48_20275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M0D48_20285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M0D48_20285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M0D48_20290 PF02556 Preprotein translocase subunit SecB M0D48_20295 PF00581 Rhodanese-like domain M0D48_20335 PF02803 Thiolase, C-terminal domain M0D48_20335 PF00108 Thiolase, N-terminal domain M0D48_20345 PF03544 Gram-negative bacterial TonB protein C-terminal M0D48_20350 PF00080 Copper/zinc superoxide dismutase (SODC) M0D48_20355 PF00080 Copper/zinc superoxide dismutase (SODC) M0D48_20360 PF02954 Bacterial regulatory protein, Fis family M0D48_20360 PF00072 Response regulator receiver domain M0D48_20360 PF00158 Sigma-54 interaction domain M0D48_20365 PF00512 His Kinase A (phospho-acceptor) domain M0D48_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_20365 PF00989 PAS fold M0D48_20370 PF00909 Ammonium Transporter Family M0D48_20375 PF00543 Nitrogen regulatory protein P-II M0D48_20380 PF03951 Glutamine synthetase, beta-Grasp domain M0D48_20380 PF00120 Glutamine synthetase, catalytic domain M0D48_20385 PF02673 Bacitracin resistance protein BacA M0D48_20395 PF00107 Zinc-binding dehydrogenase M0D48_20395 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_20420 PF03061 Thioesterase superfamily M0D48_20425 PF13091 PLD-like domain M0D48_20440 PF10609 NUBPL iron-transfer P-loop NTPase M0D48_20440 PF01883 Iron-sulfur cluster assembly protein M0D48_20460 PF01381 Helix-turn-helix M0D48_20465 PF07804 HipA-like C-terminal domain M0D48_20465 PF13657 HipA N-terminal domain M0D48_20470 PF10017 Histidine-specific methyltransferase, SAM-dependent M0D48_20475 PF03781 Sulfatase-modifying factor enzyme 1 M0D48_20475 PF12867 DinB superfamily M0D48_20485 PF00528 Binding-protein-dependent transport system inner membrane component M0D48_20490 PF00571 CBS domain M0D48_20490 PF00005 ABC transporter M0D48_20505 PF00005 ABC transporter M0D48_20515 PF07687 Peptidase dimerisation domain M0D48_20515 PF01546 Peptidase family M20/M25/M40 M0D48_20520 PF01734 Patatin-like phospholipase M0D48_20525 PF07715 TonB-dependent Receptor Plug Domain M0D48_20525 PF07660 Secretin and TonB N terminus short domain M0D48_20525 PF00593 TonB dependent receptor M0D48_20530 PF01037 Lrp/AsnC ligand binding domain M0D48_20535 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M0D48_20545 PF00657 GDSL-like Lipase/Acylhydrolase M0D48_20560 PF04962 KduI/IolB family M0D48_20565 PF00356 Bacterial regulatory proteins, lacI family M0D48_20570 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain M0D48_20570 PF04616 Glycosyl hydrolases family 43 M0D48_20575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M0D48_20585 PF03480 Bacterial extracellular solute-binding protein, family 7 M0D48_20595 PF07859 alpha/beta hydrolase fold M0D48_20595 PF13472 GDSL-like Lipase/Acylhydrolase family M0D48_20600 PF00135 Carboxylesterase family M0D48_20605 PF13472 GDSL-like Lipase/Acylhydrolase family M0D48_20610 PF00248 Aldo/keto reductase family M0D48_20640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M0D48_20640 PF02806 Alpha amylase, C-terminal all-beta domain M0D48_20640 PF00128 Alpha amylase, catalytic domain M0D48_20645 PF16657 Maltogenic Amylase, C-terminal domain M0D48_20645 PF00128 Alpha amylase, catalytic domain M0D48_20650 PF00128 Alpha amylase, catalytic domain M0D48_20650 PF11896 Domain of unknown function (DUF3416) M0D48_20655 PF17287 POTRA domain M0D48_20655 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB M0D48_20655 PF08479 POTRA domain, ShlB-type M0D48_20660 PF13018 Extended Signal Peptide of Type V secretion system M0D48_20660 PF05860 haemagglutination activity domain M0D48_20660 PF04829 Pre-toxin domain with VENN motif M0D48_20660 PF13332 Hemagglutinin repeat M0D48_20670 PF13018 Extended Signal Peptide of Type V secretion system M0D48_20670 PF13332 Hemagglutinin repeat M0D48_20670 PF05860 haemagglutination activity domain M0D48_20670 PF04829 Pre-toxin domain with VENN motif M0D48_20680 PF04829 Pre-toxin domain with VENN motif M0D48_20680 PF05860 haemagglutination activity domain M0D48_20680 PF13332 Hemagglutinin repeat M0D48_20685 PF13332 Hemagglutinin repeat M0D48_20685 PF04829 Pre-toxin domain with VENN motif M0D48_20685 PF13018 Extended Signal Peptide of Type V secretion system M0D48_20685 PF05860 haemagglutination activity domain M0D48_20725 PF13438 Domain of unknown function (DUF4113) M0D48_20725 PF11799 impB/mucB/samB family C-terminal domain M0D48_20725 PF11798 IMS family HHH motif M0D48_20725 PF00817 impB/mucB/samB family M0D48_20765 PF00294 pfkB family carbohydrate kinase M0D48_20775 PF12241 Trans-2-enoyl-CoA reductase catalytic region M0D48_20775 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M0D48_20775 PF07055 Enoyl reductase FAD binding domain M0D48_20780 PF00486 Transcriptional regulatory protein, C terminal M0D48_20780 PF18500 CadC C-terminal domain 1 M0D48_20800 PF00196 Bacterial regulatory proteins, luxR family M0D48_20800 PF00072 Response regulator receiver domain M0D48_20805 PF07730 Histidine kinase M0D48_20810 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family M0D48_20815 PF01070 FMN-dependent dehydrogenase M0D48_20820 PF02735 Ku70/Ku80 beta-barrel domain M0D48_20840 PF00171 Aldehyde dehydrogenase family M0D48_20845 PF00593 TonB dependent receptor M0D48_20845 PF07715 TonB-dependent Receptor Plug Domain M0D48_20850 PF00155 Aminotransferase class I and II M0D48_20855 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M0D48_20905 PF17863 AAA lid domain M0D48_20905 PF07726 ATPase family associated with various cellular activities (AAA) M0D48_20945 PF08946 Osmosensory transporter coiled coil M0D48_20945 PF00083 Sugar (and other) transporter M0D48_20950 PF00085 Thioredoxin M0D48_20965 PF00293 NUDIX domain M0D48_20965 PF13344 Haloacid dehalogenase-like hydrolase M0D48_20975 PF02868 Thermolysin metallopeptidase, alpha-helical domain M0D48_20975 PF01447 Thermolysin metallopeptidase, catalytic domain M0D48_20975 PF16485 Protealysin propeptide M0D48_20995 PF00072 Response regulator receiver domain M0D48_20995 PF13188 PAS domain M0D48_20995 PF08448 PAS fold M0D48_20995 PF00512 His Kinase A (phospho-acceptor) domain M0D48_20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_21005 PF00196 Bacterial regulatory proteins, luxR family M0D48_21005 PF00072 Response regulator receiver domain M0D48_21010 PF05532 CsbD-like M0D48_21020 PF02798 Glutathione S-transferase, N-terminal domain M0D48_21020 PF00043 Glutathione S-transferase, C-terminal domain M0D48_21030 PF03006 Haemolysin-III related M0D48_21035 PF00270 DEAD/DEAH box helicase M0D48_21035 PF09369 Domain of unknown function (DUF1998) M0D48_21035 PF00271 Helicase conserved C-terminal domain M0D48_21110 PF00685 Sulfotransferase domain M0D48_21115 PF07475 HPr Serine kinase C-terminal domain M0D48_21115 PF02603 HPr Serine kinase N terminus M0D48_21135 PF00733 Asparagine synthase M0D48_21135 PF13537 Glutamine amidotransferase domain M0D48_21145 PF00005 ABC transporter M0D48_21145 PF00664 ABC transporter transmembrane region M0D48_21160 PF16363 GDP-mannose 4,6 dehydratase M0D48_21175 PF13537 Glutamine amidotransferase domain M0D48_21175 PF00733 Asparagine synthase M0D48_21195 PF00534 Glycosyl transferases group 1 M0D48_21195 PF13439 Glycosyltransferase Family 4 M0D48_21200 PF03808 Glycosyl transferase WecB/TagA/CpsF family M0D48_21215 PF02350 UDP-N-acetylglucosamine 2-epimerase M0D48_21220 PF02397 Bacterial sugar transferase M0D48_21240 PF10091 Putative glucoamylase M0D48_21240 PF06165 Glycosyltransferase family 36 M0D48_21240 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M0D48_21280 PF01493 GXGXG motif M0D48_21280 PF01645 Conserved region in glutamate synthase M0D48_21280 PF04898 Glutamate synthase central domain M0D48_21280 PF00310 Glutamine amidotransferases class-II M0D48_21285 PF07992 Pyridine nucleotide-disulphide oxidoreductase M0D48_21285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M0D48_21300 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_21300 PF00107 Zinc-binding dehydrogenase M0D48_21305 PF00150 Cellulase (glycosyl hydrolase family 5) M0D48_21310 PF00150 Cellulase (glycosyl hydrolase family 5) M0D48_21315 PF00150 Cellulase (glycosyl hydrolase family 5) M0D48_21325 PF04389 Peptidase family M28 M0D48_21335 PF01551 Peptidase family M23 M0D48_21340 PF13180 PDZ domain M0D48_21340 PF03572 Peptidase family S41 M0D48_21345 PF01842 ACT domain M0D48_21345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M0D48_21345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M0D48_21360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M0D48_21370 PF04055 Radical SAM superfamily M0D48_21385 PF13396 Phospholipase_D-nuclease N-terminal M0D48_21385 PF13091 PLD-like domain M0D48_21395 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M0D48_21405 PF02472 Biopolymer transport protein ExbD/TolR M0D48_21410 PF02472 Biopolymer transport protein ExbD/TolR M0D48_21415 PF01618 MotA/TolQ/ExbB proton channel family M0D48_21420 PF03544 Gram-negative bacterial TonB protein C-terminal M0D48_21430 PF01435 Peptidase family M48 M0D48_21440 PF00204 DNA gyrase B M0D48_21440 PF18053 DNA gyrase B subunit insert domain M0D48_21440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M0D48_21440 PF01751 Toprim domain M0D48_21440 PF00986 DNA gyrase B subunit, carboxyl terminus M0D48_21445 PF02463 RecF/RecN/SMC N terminal domain M0D48_21450 PF00712 DNA polymerase III beta subunit, N-terminal domain M0D48_21450 PF02768 DNA polymerase III beta subunit, C-terminal domain M0D48_21450 PF02767 DNA polymerase III beta subunit, central domain M0D48_21455 PF11638 DnaA N-terminal domain M0D48_21455 PF00308 Bacterial dnaA protein M0D48_21455 PF08299 Bacterial dnaA protein helix-turn-helix M0D48_21460 PF00468 Ribosomal protein L34 M0D48_21465 PF00825 Ribonuclease P M0D48_21470 PF02096 60Kd inner membrane protein M0D48_21470 PF14849 YidC periplasmic domain M0D48_21475 PF01522 Polysaccharide deacetylase M0D48_21480 PF01926 50S ribosome-binding GTPase M0D48_21480 PF12631 MnmE helical domain M0D48_21480 PF10396 GTP-binding protein TrmE N-terminus M0D48_21485 PF01569 PAP2 superfamily M0D48_21495 PF03009 Glycerophosphoryl diester phosphodiesterase family M0D48_21500 PF01694 Rhomboid family M0D48_21505 PF03741 Integral membrane protein TerC family M0D48_21510 PF17785 PUA-like domain M0D48_21510 PF10672 S-adenosylmethionine-dependent methyltransferase M0D48_21525 PF07690 Major Facilitator Superfamily M0D48_21530 PF02595 Glycerate kinase family M0D48_21535 PF13556 PucR C-terminal helix-turn-helix domain M0D48_21535 PF05651 Putative sugar diacid recognition M0D48_21535 PF17853 GGDEF-like domain M0D48_21540 PF00990 Diguanylate cyclase, GGDEF domain M0D48_21540 PF08448 PAS fold M0D48_21545 PF10947 Protein of unknown function (DUF2628) M0D48_21560 PF07971 Glycosyl hydrolase family 92 M0D48_21560 PF17678 Glycosyl hydrolase family 92 N-terminal domain M0D48_21565 PF13520 Amino acid permease M0D48_21585 PF03466 LysR substrate binding domain M0D48_21585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M0D48_21590 PF08240 Alcohol dehydrogenase GroES-like domain M0D48_21590 PF00107 Zinc-binding dehydrogenase M0D48_21595 PF02646 RmuC family M0D48_21605 PF00255 Glutathione peroxidase M0D48_21615 PF04333 MlaA lipoprotein M0D48_21625 PF05494 MlaC protein M0D48_21635 PF02405 Permease MlaE M0D48_21640 PF00005 ABC transporter M0D48_21645 PF17946 RecC C-terminal domain M0D48_21650 PF12705 PD-(D/E)XK nuclease superfamily M0D48_21650 PF00580 UvrD/REP helicase N-terminal domain M0D48_21650 PF13361 UvrD-like helicase C-terminal domain M0D48_21655 PF13538 UvrD-like helicase C-terminal domain M0D48_21695 PF00849 RNA pseudouridylate synthase M0D48_21740 PF13396 Phospholipase_D-nuclease N-terminal M0D48_21740 PF13091 PLD-like domain M0D48_21775 PF00083 Sugar (and other) transporter M0D48_21780 PF04632 Fusaric acid resistance protein family M0D48_21785 PF02321 Outer membrane efflux protein M0D48_21790 PF13533 Biotin-lipoyl like M0D48_21805 PF01227 GTP cyclohydrolase I M0D48_21825 PF01925 Sulfite exporter TauE/SafE M0D48_21830 PF02810 SEC-C motif M0D48_21840 PF01263 Aldose 1-epimerase M0D48_21845 PF07690 Major Facilitator Superfamily M0D48_21850 PF01126 Heme oxygenase M0D48_21855 PF01590 GAF domain M0D48_21855 PF08446 PAS fold M0D48_21855 PF13426 PAS domain M0D48_21855 PF00360 Phytochrome region M0D48_21860 PF03594 Benzoate membrane transport protein