locus-tag class description SB85_00010 PF00005 ABC transporter SB85_00020 PF13525 Outer membrane lipoprotein SB85_00025 PF00849 RNA pseudouridylate synthase SB85_00050 PF02203 Tar ligand binding domain homologue SB85_00050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_00050 PF00672 HAMP domain SB85_00055 PF00982 Glycosyltransferase family 20 SB85_00060 PF00723 Glycosyl hydrolases family 15 SB85_00065 PF02358 Trehalose-phosphatase SB85_00070 PF07715 TonB-dependent Receptor Plug Domain SB85_00070 PF00593 TonB dependent receptor SB85_00105 PF07724 AAA domain (Cdc48 subfamily) SB85_00105 PF02861 Clp amino terminal domain, pathogenicity island component SB85_00105 PF00004 ATPase family associated with various cellular activities (AAA) SB85_00105 PF10431 C-terminal, D2-small domain, of ClpB protein SB85_00105 PF17871 AAA lid domain SB85_00120 PF01053 Cys/Met metabolism PLP-dependent enzyme SB85_00130 PF07690 Major Facilitator Superfamily SB85_00140 PF07769 psiF repeat SB85_00145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SB85_00145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SB85_00150 PF04183 IucA / IucC family SB85_00150 PF06276 Ferric iron reductase FhuF-like transporter SB85_00155 PF07690 Major Facilitator Superfamily SB85_00160 PF06276 Ferric iron reductase FhuF-like transporter SB85_00160 PF04183 IucA / IucC family SB85_00170 PF07715 TonB-dependent Receptor Plug Domain SB85_00170 PF07660 Secretin and TonB N terminus short domain SB85_00170 PF00593 TonB dependent receptor SB85_00175 PF03328 HpcH/HpaI aldolase/citrate lyase family SB85_00180 PF02254 TrkA-N domain SB85_00180 PF00999 Sodium/hydrogen exchanger family SB85_00200 PF00593 TonB dependent receptor SB85_00200 PF07715 TonB-dependent Receptor Plug Domain SB85_00205 PF07715 TonB-dependent Receptor Plug Domain SB85_00205 PF00593 TonB dependent receptor SB85_00210 PF00005 ABC transporter SB85_00210 PF12848 ABC transporter SB85_00220 PF03466 LysR substrate binding domain SB85_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_00235 PF04185 Phosphoesterase family SB85_00235 PF05506 Domain of unknown function (DUF756) SB85_00255 PF00152 tRNA synthetases class II (D, K and N) SB85_00255 PF02938 GAD domain SB85_00255 PF01336 OB-fold nucleic acid binding domain SB85_00285 PF01709 Transcriptional regulator SB85_00290 PF02075 Crossover junction endodeoxyribonuclease RuvC SB85_00295 PF01330 RuvA N terminal domain SB85_00295 PF07499 RuvA, C-terminal domain SB85_00300 PF02705 K+ potassium transporter SB85_00305 PF05496 Holliday junction DNA helicase RuvB P-loop domain SB85_00305 PF05491 RuvB C-terminal winged helix domain SB85_00305 PF17864 RuvB AAA lid domain SB85_00310 PF03061 Thioesterase superfamily SB85_00315 PF01618 MotA/TolQ/ExbB proton channel family SB85_00320 PF02472 Biopolymer transport protein ExbD/TolR SB85_00330 PF07676 WD40-like Beta Propeller Repeat SB85_00330 PF04052 TolB amino-terminal domain SB85_00335 PF00691 OmpA family SB85_00345 PF04055 Radical SAM superfamily SB85_00350 PF06508 Queuosine biosynthesis protein QueC SB85_00380 PF00271 Helicase conserved C-terminal domain SB85_00380 PF09382 RQC domain SB85_00380 PF16124 RecQ zinc-binding SB85_00380 PF00570 HRDC domain SB85_00380 PF00270 DEAD/DEAH box helicase SB85_00385 PF00210 Ferritin-like domain SB85_00395 PF00654 Voltage gated chloride channel SB85_00405 PF04055 Radical SAM superfamily SB85_00405 PF13186 Iron-sulfur cluster-binding domain SB85_00410 PF05402 Coenzyme PQQ synthesis protein D (PqqD) SB85_00415 PF03070 TENA/THI-4/PQQC family SB85_00420 PF12706 Beta-lactamase superfamily domain SB85_00430 PF02824 TGS domain SB85_00430 PF04607 Region found in RelA / SpoT proteins SB85_00430 PF13291 ACT domain SB85_00440 PF00535 Glycosyl transferase family 2 SB85_00445 PF00912 Transglycosylase SB85_00445 PF00905 Penicillin binding protein transpeptidase domain SB85_00445 PF14814 Bifunctional transglycosylase second domain SB85_00455 PF13307 Helicase C-terminal domain SB85_00455 PF04851 Type III restriction enzyme, res subunit SB85_00460 PF00814 Glycoprotease family SB85_00465 PF03747 ADP-ribosylglycohydrolase SB85_00470 PF00593 TonB dependent receptor SB85_00480 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SB85_00480 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SB85_00485 PF00072 Response regulator receiver domain SB85_00490 PF00072 Response regulator receiver domain SB85_00495 PF01584 CheW-like domain SB85_00500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SB85_00500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_00505 PF01627 Hpt domain SB85_00505 PF00072 Response regulator receiver domain SB85_00505 PF01584 CheW-like domain SB85_00525 PF01112 Asparaginase SB85_00530 PF03932 CutC family SB85_00590 PF01638 HxlR-like helix-turn-helix SB85_00595 PF08240 Alcohol dehydrogenase GroES-like domain SB85_00595 PF00107 Zinc-binding dehydrogenase SB85_00615 PF00709 Adenylosuccinate synthetase SB85_00625 PF01420 Type I restriction modification DNA specificity domain SB85_00635 PF02384 N-6 DNA Methylase SB85_00645 PF08463 EcoEI R protein C-terminal SB85_00645 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SB85_00645 PF00271 Helicase conserved C-terminal domain SB85_00645 PF04851 Type III restriction enzyme, res subunit SB85_00655 PF01301 Glycosyl hydrolases family 35 SB85_00660 PF17678 Glycosyl hydrolase family 92 N-terminal domain SB85_00660 PF07971 Glycosyl hydrolase family 92 SB85_00670 PF02056 Family 4 glycosyl hydrolase SB85_00670 PF11975 Family 4 glycosyl hydrolase C-terminal domain SB85_00680 PF13520 Amino acid permease SB85_00685 PF01301 Glycosyl hydrolases family 35 SB85_00695 PF14310 Fibronectin type III-like domain SB85_00695 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_00695 PF01915 Glycosyl hydrolase family 3 C-terminal domain SB85_00695 PF07691 PA14 domain SB85_00705 PF02838 Glycosyl hydrolase family 20, domain 2 SB85_00705 PF07691 PA14 domain SB85_00705 PF00728 Glycosyl hydrolase family 20, catalytic domain SB85_00710 PF00704 Glycosyl hydrolases family 18 SB85_00710 PF01476 LysM domain SB85_00725 PF02685 Glucokinase SB85_00730 PF04452 RNA methyltransferase SB85_00735 PF00202 Aminotransferase class-III SB85_00740 PF00293 NUDIX domain SB85_00745 PF00459 Inositol monophosphatase family SB85_00750 PF03819 MazG nucleotide pyrophosphohydrolase domain SB85_00755 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SB85_00765 PF16200 C-terminal region of band_7 SB85_00765 PF01145 SPFH domain / Band 7 family SB85_00775 PF08669 Glycine cleavage T-protein C-terminal barrel domain SB85_00775 PF01571 Aminomethyltransferase folate-binding domain SB85_00780 PF01597 Glycine cleavage H-protein SB85_00795 PF05199 GMC oxidoreductase SB85_00795 PF00732 GMC oxidoreductase SB85_00815 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_00815 PF09317 Domain of unknown function (DUF1974) SB85_00815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_00815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_00825 PF00440 Bacterial regulatory proteins, tetR family SB85_00830 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_00830 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_00830 PF01610 Transposase SB85_00835 PF00593 TonB dependent receptor SB85_00835 PF07715 TonB-dependent Receptor Plug Domain SB85_00850 PF00912 Transglycosylase SB85_00855 PF00535 Glycosyl transferase family 2 SB85_00860 PF00571 CBS domain SB85_00870 PF03006 Haemolysin-III related SB85_00875 PF16658 Class II release factor RF3, C-terminal domain SB85_00875 PF00009 Elongation factor Tu GTP binding domain SB85_00880 PF01476 LysM domain SB85_00880 PF08525 Opacity-associated protein A N-terminal motif SB85_00880 PF01551 Peptidase family M23 SB85_00885 PF00561 alpha/beta hydrolase fold SB85_00890 PF01053 Cys/Met metabolism PLP-dependent enzyme SB85_00895 PF03447 Homoserine dehydrogenase, NAD binding domain SB85_00895 PF00742 Homoserine dehydrogenase SB85_00895 PF00696 Amino acid kinase family SB85_00900 PF00561 alpha/beta hydrolase fold SB85_00900 PF08386 TAP-like protein SB85_00905 PF00990 Diguanylate cyclase, GGDEF domain SB85_00910 PF03315 Serine dehydratase beta chain SB85_00910 PF03313 Serine dehydratase alpha chain SB85_00920 PF13417 Glutathione S-transferase, N-terminal domain SB85_00920 PF00043 Glutathione S-transferase, C-terminal domain SB85_00925 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_00925 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_00925 PF01610 Transposase SB85_00930 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_00930 PF01610 Transposase SB85_00930 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_00945 PF02581 Thiamine monophosphate synthase SB85_00945 PF08543 Phosphomethylpyrimidine kinase SB85_00960 PF02562 PhoH-like protein SB85_00960 PF13638 PIN domain SB85_00965 PF00578 AhpC/TSA family SB85_00975 PF00701 Dihydrodipicolinate synthetase family SB85_00985 PF00037 4Fe-4S binding domain SB85_00985 PF11953 Domain of unknown function (DUF3470) SB85_00990 PF05035 2-keto-3-deoxy-galactonokinase SB85_00995 PF08450 SMP-30/Gluconolactonase/LRE-like region SB85_01000 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SB85_01000 PF13378 Enolase C-terminal domain-like SB85_01005 PF01081 KDPG and KHG aldolase SB85_01010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_01010 PF03466 LysR substrate binding domain SB85_01030 PF16338 Domain of unknown function (DUF4968) SB85_01030 PF17137 Domain of unknown function (DUF5110) SB85_01030 PF01055 Glycosyl hydrolases family 31 SB85_01035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SB85_01035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SB85_01045 PF00083 Sugar (and other) transporter SB85_01050 PF02649 Type I GTP cyclohydrolase folE2 SB85_01060 PF12626 Polymerase A arginine-rich C-terminus SB85_01060 PF12627 Probable RNA and SrmB- binding site of polymerase A SB85_01060 PF01743 Poly A polymerase head domain SB85_01065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SB85_01070 PF02548 Ketopantoate hydroxymethyltransferase SB85_01075 PF02569 Pantoate-beta-alanine ligase SB85_01080 PF02261 Aspartate decarboxylase SB85_01085 PF00342 Phosphoglucose isomerase SB85_01095 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_01095 PF01915 Glycosyl hydrolase family 3 C-terminal domain SB85_01095 PF14310 Fibronectin type III-like domain SB85_01100 PF00474 Sodium:solute symporter family SB85_01105 PF00990 Diguanylate cyclase, GGDEF domain SB85_01105 PF03707 Bacterial signalling protein N terminal repeat SB85_01105 PF00563 EAL domain SB85_01110 PF00072 Response regulator receiver domain SB85_01110 PF02954 Bacterial regulatory protein, Fis family SB85_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_01115 PF00512 His Kinase A (phospho-acceptor) domain SB85_01120 PF04551 GcpE protein SB85_01125 PF01569 PAP2 superfamily SB85_01135 PF01177 Asp/Glu/Hydantoin racemase SB85_01150 PF01180 Dihydroorotate dehydrogenase SB85_01165 PF00171 Aldehyde dehydrogenase family SB85_01180 PF00696 Amino acid kinase family SB85_01180 PF01842 ACT domain SB85_01180 PF03447 Homoserine dehydrogenase, NAD binding domain SB85_01180 PF00742 Homoserine dehydrogenase SB85_01180 PF13840 ACT domain SB85_01185 PF00288 GHMP kinases N terminal domain SB85_01185 PF08544 GHMP kinases C terminal SB85_01195 PF14821 Threonine synthase N terminus SB85_01195 PF00291 Pyridoxal-phosphate dependent enzyme SB85_01205 PF00027 Cyclic nucleotide-binding domain SB85_01205 PF13545 Crp-like helix-turn-helix domain SB85_01215 PF13545 Crp-like helix-turn-helix domain SB85_01215 PF00027 Cyclic nucleotide-binding domain SB85_01220 PF03129 Anticodon binding domain SB85_01220 PF13393 Histidyl-tRNA synthetase SB85_01235 PF01634 ATP phosphoribosyltransferase SB85_01235 PF08029 HisG, C-terminal domain SB85_01240 PF00815 Histidinol dehydrogenase SB85_01245 PF00155 Aminotransferase class I and II SB85_01250 PF00475 Imidazoleglycerol-phosphate dehydratase SB85_01255 PF00117 Glutamine amidotransferase class-I SB85_01260 PF00977 Histidine biosynthesis protein SB85_01265 PF00977 Histidine biosynthesis protein SB85_01270 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SB85_01270 PF01502 Phosphoribosyl-AMP cyclohydrolase SB85_01290 PF03079 ARD/ARD' family SB85_01295 PF00596 Class II Aldolase and Adducin N-terminal domain SB85_01300 PF13520 Amino acid permease SB85_01305 PF13520 Amino acid permease SB85_01315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SB85_01315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SB85_01320 PF02913 FAD linked oxidases, C-terminal domain SB85_01320 PF01565 FAD binding domain SB85_01340 PF01132 Elongation factor P (EF-P) OB domain SB85_01340 PF08207 Elongation factor P (EF-P) KOW-like domain SB85_01340 PF09285 Elongation factor P, C-terminal SB85_01345 PF00106 short chain dehydrogenase SB85_01350 PF00682 HMGL-like SB85_01360 PF00378 Enoyl-CoA hydratase/isomerase SB85_01370 PF07664 Ferrous iron transport protein B C terminus SB85_01370 PF02421 Ferrous iron transport protein B SB85_01370 PF07670 Nucleoside recognition SB85_01385 PF00155 Aminotransferase class I and II SB85_01400 PF00117 Glutamine amidotransferase class-I SB85_01400 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SB85_01410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SB85_01410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SB85_01410 PF02142 MGS-like domain SB85_01415 PF03449 Transcription elongation factor, N-terminal SB85_01415 PF01272 Transcription elongation factor, GreA/GreB, C-term SB85_01425 PF17768 RecJ OB domain SB85_01425 PF02272 DHHA1 domain SB85_01425 PF01368 DHH family SB85_01430 PF03412 Peptidase C39 family SB85_01430 PF00664 ABC transporter transmembrane region SB85_01430 PF00005 ABC transporter SB85_01455 PF00072 Response regulator receiver domain SB85_01455 PF04397 LytTr DNA-binding domain SB85_01460 PF00472 RF-1 domain SB85_01460 PF03462 PCRF domain SB85_01465 PF00152 tRNA synthetases class II (D, K and N) SB85_01465 PF01336 OB-fold nucleic acid binding domain SB85_01470 PF00072 Response regulator receiver domain SB85_01480 PF00378 Enoyl-CoA hydratase/isomerase SB85_01485 PF13193 AMP-binding enzyme C-terminal domain SB85_01485 PF00501 AMP-binding enzyme SB85_01490 PF00330 Aconitase family (aconitate hydratase) SB85_01490 PF00694 Aconitase C-terminal domain SB85_01505 PF06434 Aconitate hydratase 2 N-terminus SB85_01505 PF00330 Aconitase family (aconitate hydratase) SB85_01505 PF11791 Aconitate B N-terminal domain SB85_01510 PF00990 Diguanylate cyclase, GGDEF domain SB85_01510 PF03707 Bacterial signalling protein N terminal repeat SB85_01510 PF00563 EAL domain SB85_01515 PF01339 CheB methylesterase SB85_01515 PF00072 Response regulator receiver domain SB85_01520 PF03975 CheD chemotactic sensory transduction SB85_01535 PF00672 HAMP domain SB85_01535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01535 PF02203 Tar ligand binding domain homologue SB85_01545 PF01584 CheW-like domain SB85_01550 PF07317 Flagellar regulator YcgR SB85_01550 PF07238 PilZ domain SB85_01555 PF02203 Tar ligand binding domain homologue SB85_01555 PF00672 HAMP domain SB85_01555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01565 PF00672 HAMP domain SB85_01565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01565 PF02203 Tar ligand binding domain homologue SB85_01570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01570 PF02203 Tar ligand binding domain homologue SB85_01570 PF00672 HAMP domain SB85_01575 PF00672 HAMP domain SB85_01575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01575 PF02203 Tar ligand binding domain homologue SB85_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01580 PF02203 Tar ligand binding domain homologue SB85_01580 PF00672 HAMP domain SB85_01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01590 PF02203 Tar ligand binding domain homologue SB85_01590 PF00672 HAMP domain SB85_01595 PF02203 Tar ligand binding domain homologue SB85_01595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01595 PF00672 HAMP domain SB85_01605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01605 PF02203 Tar ligand binding domain homologue SB85_01605 PF00672 HAMP domain SB85_01610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01610 PF00672 HAMP domain SB85_01610 PF02203 Tar ligand binding domain homologue SB85_01615 PF09078 CheY binding SB85_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_01615 PF02895 Signal transducing histidine kinase, homodimeric domain SB85_01615 PF01627 Hpt domain SB85_01615 PF01584 CheW-like domain SB85_01620 PF00072 Response regulator receiver domain SB85_01640 PF13614 AAA domain SB85_01650 PF01618 MotA/TolQ/ExbB proton channel family SB85_01655 PF09078 CheY binding SB85_01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_01655 PF01584 CheW-like domain SB85_01655 PF01627 Hpt domain SB85_01655 PF02895 Signal transducing histidine kinase, homodimeric domain SB85_01660 PF04344 Chemotaxis phosphatase, CheZ SB85_01665 PF00072 Response regulator receiver domain SB85_01670 PF04539 Sigma-70 region 3 SB85_01670 PF04542 Sigma-70 region 2 SB85_01670 PF04545 Sigma-70, region 4 SB85_01675 PF10609 NUBPL iron-transfer P-loop NTPase SB85_01685 PF00448 SRP54-type protein, GTPase domain SB85_01700 PF13188 PAS domain SB85_01700 PF00990 Diguanylate cyclase, GGDEF domain SB85_01700 PF00563 EAL domain SB85_01700 PF03707 Bacterial signalling protein N terminal repeat SB85_01705 PF01311 Bacterial export proteins, family 1 SB85_01715 PF00813 FliP family SB85_01750 PF01706 FliG C-terminal domain SB85_01750 PF14841 FliG middle domain SB85_01750 PF14842 FliG N-terminal domain SB85_01755 PF08345 Flagellar M-ring protein C-terminal SB85_01755 PF01514 Secretory protein of YscJ/FliF family SB85_01760 PF02049 Flagellar hook-basal body complex protein FliE SB85_01765 PF00534 Glycosyl transferases group 1 SB85_01765 PF00535 Glycosyl transferase family 2 SB85_01795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SB85_01795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SB85_01805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SB85_01810 PF00158 Sigma-54 interaction domain SB85_01810 PF02954 Bacterial regulatory protein, Fis family SB85_01810 PF00072 Response regulator receiver domain SB85_01815 PF00072 Response regulator receiver domain SB85_01815 PF01339 CheB methylesterase SB85_01820 PF00309 Sigma-54 factor, Activator interacting domain (AID) SB85_01820 PF04552 Sigma-54, DNA binding domain SB85_01820 PF04963 Sigma-54 factor, core binding domain SB85_01825 PF00196 Bacterial regulatory proteins, luxR family SB85_01825 PF00072 Response regulator receiver domain SB85_01840 PF02561 Flagellar protein FliS SB85_01850 PF00669 Bacterial flagellin N-terminal helical region SB85_01850 PF00700 Bacterial flagellin C-terminal helical region SB85_01855 PF00669 Bacterial flagellin N-terminal helical region SB85_01855 PF00700 Bacterial flagellin C-terminal helical region SB85_01860 PF00669 Bacterial flagellin N-terminal helical region SB85_01860 PF07196 Flagellin hook IN motif SB85_01860 PF00700 Bacterial flagellin C-terminal helical region SB85_01870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SB85_01870 PF07196 Flagellin hook IN motif SB85_01885 PF02107 Flagellar L-ring protein SB85_01890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SB85_01890 PF00460 Flagella basal body rod protein SB85_01895 PF00460 Flagella basal body rod protein SB85_01895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SB85_01900 PF07559 Flagellar basal body protein FlaE SB85_01900 PF00460 Flagella basal body rod protein SB85_01900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SB85_01910 PF00460 Flagella basal body rod protein SB85_01910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SB85_01920 PF00072 Response regulator receiver domain SB85_01920 PF01584 CheW-like domain SB85_01940 PF00512 His Kinase A (phospho-acceptor) domain SB85_01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_01945 PF00563 EAL domain SB85_01945 PF03707 Bacterial signalling protein N terminal repeat SB85_01945 PF00990 Diguanylate cyclase, GGDEF domain SB85_01950 PF07730 Histidine kinase SB85_01950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_01955 PF00563 EAL domain SB85_01955 PF00990 Diguanylate cyclase, GGDEF domain SB85_01955 PF03707 Bacterial signalling protein N terminal repeat SB85_01965 PF00005 ABC transporter SB85_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_01980 PF00672 HAMP domain SB85_01980 PF12729 Four helix bundle sensory module for signal transduction SB85_01985 PF04356 Protein of unknown function (DUF489) SB85_01995 PF00293 NUDIX domain SB85_02005 PF02617 ATP-dependent Clp protease adaptor protein ClpS SB85_02010 PF10431 C-terminal, D2-small domain, of ClpB protein SB85_02010 PF02861 Clp amino terminal domain, pathogenicity island component SB85_02010 PF17871 AAA lid domain SB85_02010 PF00004 ATPase family associated with various cellular activities (AAA) SB85_02010 PF07724 AAA domain (Cdc48 subfamily) SB85_02015 PF01176 Translation initiation factor 1A / IF-1 SB85_02020 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SB85_02045 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_02050 PF17854 FtsK alpha domain SB85_02050 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SB85_02050 PF09397 Ftsk gamma domain SB85_02050 PF01580 FtsK/SpoIIIE family SB85_02060 PF03548 Outer membrane lipoprotein carrier protein LolA SB85_02065 PF01545 Cation efflux family SB85_02070 PF16193 AAA C-terminal domain SB85_02070 PF12002 MgsA AAA+ ATPase C terminal SB85_02070 PF00004 ATPase family associated with various cellular activities (AAA) SB85_02085 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SB85_02110 PF00072 Response regulator receiver domain SB85_02120 PF03918 Cytochrome C biogenesis protein SB85_02125 PF08534 Redoxin SB85_02130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SB85_02130 PF01578 Cytochrome C assembly protein SB85_02135 PF03100 CcmE SB85_02145 PF01578 Cytochrome C assembly protein SB85_02150 PF00082 Subtilase family SB85_02160 PF04542 Sigma-70 region 2 SB85_02160 PF08281 Sigma-70, region 4 SB85_02170 PF00034 Cytochrome c SB85_02185 PF05523 WxcM-like, C-terminal SB85_02205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SB85_02210 PF01943 Polysaccharide biosynthesis protein SB85_02215 PF00535 Glycosyl transferase family 2 SB85_02230 PF08241 Methyltransferase domain SB85_02240 PF08241 Methyltransferase domain SB85_02250 PF13439 Glycosyltransferase Family 4 SB85_02250 PF00534 Glycosyl transferases group 1 SB85_02275 PF00664 ABC transporter transmembrane region SB85_02275 PF00005 ABC transporter SB85_02300 PF00005 ABC transporter SB85_02330 PF01494 FAD binding domain SB85_02440 PF05598 Transposase domain (DUF772) SB85_02440 PF01609 Transposase DDE domain SB85_02455 PF05762 VWA domain containing CoxE-like protein SB85_02465 PF07728 AAA domain (dynein-related subfamily) SB85_02485 PF00672 HAMP domain SB85_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_02485 PF00512 His Kinase A (phospho-acceptor) domain SB85_02490 PF00486 Transcriptional regulatory protein, C terminal SB85_02490 PF00072 Response regulator receiver domain SB85_02495 PF02321 Outer membrane efflux protein SB85_02510 PF00873 AcrB/AcrD/AcrF family SB85_02550 PF00589 Phage integrase family SB85_02550 PF13356 Arm DNA-binding domain SB85_02580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SB85_02580 PF00072 Response regulator receiver domain SB85_02580 PF01627 Hpt domain SB85_02580 PF00512 His Kinase A (phospho-acceptor) domain SB85_02580 PF00672 HAMP domain SB85_02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_02585 PF16921 Tex protein YqgF-like domain SB85_02585 PF09371 Tex-like protein N-terminal domain SB85_02585 PF00575 S1 RNA binding domain SB85_02585 PF17674 HHH domain SB85_02590 PF00072 Response regulator receiver domain SB85_02590 PF13426 PAS domain SB85_02590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_02600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SB85_02600 PF01266 FAD dependent oxidoreductase SB85_02610 PF04024 PspC domain SB85_02615 PF17263 Family of unknown function (DUF5329) SB85_02620 PF00561 alpha/beta hydrolase fold SB85_02630 PF01066 CDP-alcohol phosphatidyltransferase SB85_02650 PF03618 Kinase/pyrophosphorylase SB85_02655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SB85_02655 PF02896 PEP-utilising enzyme, TIM barrel domain SB85_02655 PF00391 PEP-utilising enzyme, mobile domain SB85_02660 PF05552 Conserved TM helix SB85_02660 PF00924 Mechanosensitive ion channel SB85_02665 PF00929 Exonuclease SB85_02670 PF14437 MafB19-like deaminase SB85_02675 PF01325 Iron dependent repressor, N-terminal DNA binding domain SB85_02675 PF02742 Iron dependent repressor, metal binding and dimerisation domain SB85_02680 PF01566 Natural resistance-associated macrophage protein SB85_02690 PF18029 Glyoxalase-like domain SB85_02730 PF13195 Protein of unknown function (DUF4011) SB85_02730 PF13087 AAA domain SB85_02730 PF13086 AAA domain SB85_02735 PF03466 LysR substrate binding domain SB85_02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_02740 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus SB85_02740 PF00361 Proton-conducting membrane transporter SB85_02740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SB85_02745 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) SB85_02750 PF01638 HxlR-like helix-turn-helix SB85_02770 PF03358 NADPH-dependent FMN reductase SB85_02775 PF00117 Glutamine amidotransferase class-I SB85_02775 PF02540 NAD synthase SB85_02775 PF00958 GMP synthase C terminal domain SB85_02780 PF00478 IMP dehydrogenase / GMP reductase domain SB85_02780 PF00571 CBS domain SB85_02785 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SB85_02785 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SB85_02795 PF12146 Serine aminopeptidase, S33 SB85_02800 PF02254 TrkA-N domain SB85_02800 PF00999 Sodium/hydrogen exchanger family SB85_02805 PF00899 ThiF family SB85_02815 PF12804 MobA-like NTP transferase domain SB85_02820 PF01926 50S ribosome-binding GTPase SB85_02820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SB85_02825 PF13360 PQQ-like domain SB85_02825 PF01011 PQQ enzyme repeat SB85_02830 PF09976 Tetratricopeptide repeat-like domain SB85_02835 PF13464 Domain of unknown function (DUF4115) SB85_02845 PF04055 Radical SAM superfamily SB85_02850 PF00334 Nucleoside diphosphate kinase SB85_02860 PF00378 Enoyl-CoA hydratase/isomerase SB85_02860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SB85_02860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SB85_02865 PF02803 Thiolase, C-terminal domain SB85_02865 PF00108 Thiolase, N-terminal domain SB85_02870 PF00483 Nucleotidyl transferase SB85_02875 PF02719 Polysaccharide biosynthesis protein SB85_02880 PF00953 Glycosyl transferase family 4 SB85_02885 PF18073 Rubredoxin metal binding domain SB85_02895 PF00216 Bacterial DNA-binding protein SB85_02900 PF00575 S1 RNA binding domain SB85_02910 PF00444 Ribosomal protein L36 SB85_02920 PF04371 Porphyromonas-type peptidyl-arginine deiminase SB85_02925 PF00795 Carbon-nitrogen hydrolase SB85_02935 PF00873 AcrB/AcrD/AcrF family SB85_02940 PF00873 AcrB/AcrD/AcrF family SB85_02945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_02945 PF00529 HlyD membrane-fusion protein of T1SS SB85_02955 PF00034 Cytochrome c SB85_02965 PF01106 NifU-like domain SB85_02970 PF01329 Pterin 4 alpha carbinolamine dehydratase SB85_02980 PF02535 ZIP Zinc transporter SB85_02985 PF11737 Protein of unknown function (DUF3300) SB85_02990 PF00849 RNA pseudouridylate synthase SB85_02990 PF01479 S4 domain SB85_03000 PF00072 Response regulator receiver domain SB85_03000 PF00196 Bacterial regulatory proteins, luxR family SB85_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_03055 PF03466 LysR substrate binding domain SB85_03075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SB85_03085 PF01817 Chorismate mutase type II SB85_03085 PF00800 Prephenate dehydratase SB85_03085 PF01842 ACT domain SB85_03090 PF00266 Aminotransferase class-V SB85_03095 PF00174 Oxidoreductase molybdopterin binding domain SB85_03100 PF01794 Ferric reductase like transmembrane component SB85_03135 PF00106 short chain dehydrogenase SB85_03140 PF00392 Bacterial regulatory proteins, gntR family SB85_03140 PF07702 UTRA domain SB85_03150 PF01979 Amidohydrolase family SB85_03165 PF17391 Urocanase N-terminal domain SB85_03165 PF17392 Urocanase C-terminal domain SB85_03165 PF01175 Urocanase Rossmann-like domain SB85_03200 PF13360 PQQ-like domain SB85_03205 PF00521 DNA gyrase/topoisomerase IV, subunit A SB85_03205 PF03989 DNA gyrase C-terminal domain, beta-propeller SB85_03210 PF01008 Initiation factor 2 subunit family SB85_03220 PF00152 tRNA synthetases class II (D, K and N) SB85_03230 PF01653 NAD-dependent DNA ligase adenylation domain SB85_03230 PF03120 NAD-dependent DNA ligase OB-fold domain SB85_03230 PF00533 BRCA1 C Terminus (BRCT) domain SB85_03230 PF12826 Helix-hairpin-helix motif SB85_03230 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SB85_03235 PF00155 Aminotransferase class I and II SB85_03245 PF02463 RecF/RecN/SMC N terminal domain SB85_03250 PF03948 Ribosomal protein L9, C-terminal domain SB85_03250 PF01281 Ribosomal protein L9, N-terminal domain SB85_03255 PF01084 Ribosomal protein S18 SB85_03260 PF01250 Ribosomal protein S6 SB85_03265 PF01521 Iron-sulphur cluster biosynthesis SB85_03270 PF00152 tRNA synthetases class II (D, K and N) SB85_03270 PF01336 OB-fold nucleic acid binding domain SB85_03290 PF00484 Carbonic anhydrase SB85_03295 PF06052 3-hydroxyanthranilic acid dioxygenase SB85_03305 PF00266 Aminotransferase class-V SB85_03310 PF01494 FAD binding domain SB85_03315 PF00929 Exonuclease SB85_03315 PF08411 Exonuclease C-terminal SB85_03350 PF01513 ATP-NAD kinase SB85_03360 PF05088 Bacterial NAD-glutamate dehydrogenase SB85_03370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_03370 PF00529 HlyD membrane-fusion protein of T1SS SB85_03375 PF00873 AcrB/AcrD/AcrF family SB85_03380 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_03380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_03380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_03385 PF01209 ubiE/COQ5 methyltransferase family SB85_03390 PF02965 Vitamin B12 dependent methionine synthase, activation domain SB85_03390 PF02607 B12 binding domain SB85_03390 PF02574 Homocysteine S-methyltransferase SB85_03390 PF00809 Pterin binding enzyme SB85_03390 PF02310 B12 binding domain SB85_03395 PF02574 Homocysteine S-methyltransferase SB85_03395 PF02310 B12 binding domain SB85_03395 PF02607 B12 binding domain SB85_03395 PF02965 Vitamin B12 dependent methionine synthase, activation domain SB85_03395 PF00809 Pterin binding enzyme SB85_03400 PF16363 GDP-mannose 4,6 dehydratase SB85_03410 PF01757 Acyltransferase family SB85_03420 PF04102 SlyX SB85_03425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SB85_03425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SB85_03425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SB85_03430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SB85_03430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SB85_03435 PF00255 Glutathione peroxidase SB85_03445 PF00392 Bacterial regulatory proteins, gntR family SB85_03450 PF00005 ABC transporter SB85_03470 PF00892 EamA-like transporter family SB85_03475 PF00155 Aminotransferase class I and II SB85_03485 PF10415 Fumarase C C-terminus SB85_03485 PF00206 Lyase SB85_03495 PF03471 Transporter associated domain SB85_03495 PF01595 Cyclin M transmembrane N-terminal domain SB85_03495 PF00571 CBS domain SB85_03500 PF08328 Adenylosuccinate lyase C-terminal SB85_03500 PF00206 Lyase SB85_03510 PF08007 Cupin superfamily protein SB85_03520 PF02779 Transketolase, pyrimidine binding domain SB85_03520 PF00676 Dehydrogenase E1 component SB85_03520 PF16078 2-oxoglutarate dehydrogenase N-terminus SB85_03520 PF16870 2-oxoglutarate dehydrogenase C-terminal SB85_03525 PF02817 e3 binding domain SB85_03525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SB85_03525 PF00364 Biotin-requiring enzyme SB85_03530 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_03530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SB85_03535 PF03641 Possible lysine decarboxylase SB85_03540 PF00990 Diguanylate cyclase, GGDEF domain SB85_03540 PF03707 Bacterial signalling protein N terminal repeat SB85_03540 PF00563 EAL domain SB85_03545 PF08281 Sigma-70, region 4 SB85_03545 PF04542 Sigma-70 region 2 SB85_03555 PF01205 Uncharacterized protein family UPF0029 SB85_03560 PF00005 ABC transporter SB85_03560 PF00664 ABC transporter transmembrane region SB85_03575 PF08543 Phosphomethylpyrimidine kinase SB85_03580 PF00684 DnaJ central domain SB85_03580 PF01556 DnaJ C terminal domain SB85_03580 PF00226 DnaJ domain SB85_03585 PF00012 Hsp70 protein SB85_03590 PF01025 GrpE SB85_03595 PF01628 HrcA protein C terminal domain SB85_03595 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SB85_03600 PF02463 RecF/RecN/SMC N terminal domain SB85_03605 PF01475 Ferric uptake regulator family SB85_03610 PF04355 SmpA / OmlA family SB85_03615 PF03658 RnfH family Ubiquitin SB85_03625 PF01668 SmpB protein SB85_03645 PF05230 MASE2 domain SB85_03645 PF00990 Diguanylate cyclase, GGDEF domain SB85_03650 PF02321 Outer membrane efflux protein SB85_03655 PF00106 short chain dehydrogenase SB85_03660 PF00873 AcrB/AcrD/AcrF family SB85_03665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_03680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_03680 PF03466 LysR substrate binding domain SB85_03685 PF00691 OmpA family SB85_03685 PF05736 OprF membrane domain SB85_03690 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain SB85_03690 PF06974 Protein of unknown function (DUF1298) SB85_03695 PF00875 DNA photolyase SB85_03695 PF03441 FAD binding domain of DNA photolyase SB85_03705 PF03796 DnaB-like helicase C terminal domain SB85_03705 PF00772 DnaB-like helicase N terminal domain SB85_03710 PF03358 NADPH-dependent FMN reductase SB85_03715 PF13417 Glutathione S-transferase, N-terminal domain SB85_03725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_03725 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_03725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_03740 PF01026 TatD related DNase SB85_03745 PF00563 EAL domain SB85_03745 PF00360 Phytochrome region SB85_03745 PF00990 Diguanylate cyclase, GGDEF domain SB85_03745 PF01590 GAF domain SB85_03750 PF00899 ThiF family SB85_03765 PF00313 'Cold-shock' DNA-binding domain SB85_03775 PF02253 Phospholipase A1 SB85_03790 PF14497 Glutathione S-transferase, C-terminal domain SB85_03790 PF02798 Glutathione S-transferase, N-terminal domain SB85_03795 PF05683 Fumarase C-terminus SB85_03795 PF05681 Fumarate hydratase (Fumerase) SB85_03800 PF08281 Sigma-70, region 4 SB85_03800 PF04542 Sigma-70 region 2 SB85_03800 PF12680 SnoaL-like domain SB85_03805 PF02627 Carboxymuconolactone decarboxylase family SB85_03820 PF00005 ABC transporter SB85_03830 PF00175 Oxidoreductase NAD-binding domain SB85_03830 PF00970 Oxidoreductase FAD-binding domain SB85_03835 PF00255 Glutathione peroxidase SB85_03840 PF01432 Peptidase family M3 SB85_03850 PF00082 Subtilase family SB85_03855 PF08281 Sigma-70, region 4 SB85_03855 PF04542 Sigma-70 region 2 SB85_03890 PF00854 POT family SB85_03900 PF14310 Fibronectin type III-like domain SB85_03900 PF01915 Glycosyl hydrolase family 3 C-terminal domain SB85_03900 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_03910 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SB85_03910 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SB85_03915 PF00545 ribonuclease SB85_03930 PF03880 DbpA RNA binding domain SB85_03930 PF00270 DEAD/DEAH box helicase SB85_03930 PF00271 Helicase conserved C-terminal domain SB85_03935 PF00156 Phosphoribosyl transferase domain SB85_03940 PF00873 AcrB/AcrD/AcrF family SB85_03945 PF00529 HlyD membrane-fusion protein of T1SS SB85_03945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_03950 PF00440 Bacterial regulatory proteins, tetR family SB85_03950 PF13977 BetI-type transcriptional repressor, C-terminal SB85_03960 PF00135 Carboxylesterase family SB85_03965 PF00043 Glutathione S-transferase, C-terminal domain SB85_03965 PF02798 Glutathione S-transferase, N-terminal domain SB85_03970 PF00313 'Cold-shock' DNA-binding domain SB85_03975 PF07152 YaeQ protein SB85_03985 PF00072 Response regulator receiver domain SB85_03985 PF00990 Diguanylate cyclase, GGDEF domain SB85_03985 PF00563 EAL domain SB85_03990 PF01435 Peptidase family M48 SB85_03995 PF00749 tRNA synthetases class I (E and Q), catalytic domain SB85_04000 PF00106 short chain dehydrogenase SB85_04005 PF05233 PHB accumulation regulatory domain SB85_04005 PF07879 PHB/PHA accumulation regulator DNA-binding domain SB85_04025 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SB85_04030 PF01256 Carbohydrate kinase SB85_04030 PF03853 YjeF-related protein N-terminus SB85_04040 PF02601 Exonuclease VII, large subunit SB85_04040 PF13742 OB-fold nucleic acid binding domain SB85_04050 PF08212 Lipocalin-like domain SB85_04070 PF01047 MarR family SB85_04085 PF13533 Biotin-lipoyl like SB85_04090 PF00082 Subtilase family SB85_04095 PF00082 Subtilase family SB85_04115 PF17200 Single Cache domain 2 SB85_04115 PF07730 Histidine kinase SB85_04120 PF00196 Bacterial regulatory proteins, luxR family SB85_04120 PF00072 Response regulator receiver domain SB85_04125 PF12806 Acetyl-CoA dehydrogenase C-terminal like SB85_04125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_04125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_04125 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_04150 PF03808 Glycosyl transferase WecB/TagA/CpsF family SB85_04175 PF13439 Glycosyltransferase Family 4 SB85_04175 PF00534 Glycosyl transferases group 1 SB85_04190 PF02397 Bacterial sugar transferase SB85_04210 PF13411 MerR HTH family regulatory protein SB85_04215 PF00216 Bacterial DNA-binding protein SB85_04220 PF03483 B3/4 domain SB85_04220 PF03484 tRNA synthetase B5 domain SB85_04220 PF03147 Ferredoxin-fold anticodon binding domain SB85_04220 PF01588 Putative tRNA binding domain SB85_04220 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SB85_04225 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SB85_04225 PF01409 tRNA synthetases class II core domain (F) SB85_04230 PF00453 Ribosomal protein L20 SB85_04235 PF01632 Ribosomal protein L35 SB85_04240 PF00707 Translation initiation factor IF-3, C-terminal domain SB85_04240 PF05198 Translation initiation factor IF-3, N-terminal domain SB85_04245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SB85_04245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SB85_04245 PF03129 Anticodon binding domain SB85_04245 PF02824 TGS domain SB85_04250 PF00356 Bacterial regulatory proteins, lacI family SB85_04255 PF00686 Starch binding domain SB85_04255 PF00128 Alpha amylase, catalytic domain SB85_04270 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation SB85_04270 PF14508 Glycosyl-hydrolase 97 N-terminal SB85_04270 PF10566 Glycoside hydrolase 97 SB85_04280 PF00128 Alpha amylase, catalytic domain SB85_04290 PF01471 Putative peptidoglycan binding domain SB85_04290 PF07486 Cell Wall Hydrolase SB85_04360 PF00437 Type II/IV secretion system protein SB85_04365 PF03743 Bacterial conjugation TrbI-like protein SB85_04380 PF02534 Type IV secretory system Conjugative DNA transfer SB85_04395 PF00271 Helicase conserved C-terminal domain SB85_04395 PF04851 Type III restriction enzyme, res subunit SB85_04395 PF02151 UvrB/uvrC motif SB85_04395 PF12344 Ultra-violet resistance protein B SB85_04395 PF17757 UvrB interaction domain SB85_04400 PF07963 Prokaryotic N-terminal methylation motif SB85_04400 PF00114 Pilin (bacterial filament) SB85_04435 PF00114 Pilin (bacterial filament) SB85_04435 PF07963 Prokaryotic N-terminal methylation motif SB85_04445 PF11892 Domain of unknown function (DUF3412) SB85_04445 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SB85_04445 PF03641 Possible lysine decarboxylase SB85_04450 PF00593 TonB dependent receptor SB85_04460 PF01914 MarC family integral membrane protein SB85_04465 PF00106 short chain dehydrogenase SB85_04470 PF00462 Glutaredoxin SB85_04475 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SB85_04475 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SB85_04480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SB85_04480 PF02222 ATP-grasp domain SB85_04485 PF00731 AIR carboxylase SB85_04495 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SB85_04495 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SB85_04510 PF04386 Stringent starvation protein B SB85_04515 PF00043 Glutathione S-transferase, C-terminal domain SB85_04515 PF02798 Glutathione S-transferase, N-terminal domain SB85_04520 PF02167 Cytochrome C1 family SB85_04530 PF00355 Rieske [2Fe-2S] domain SB85_04530 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SB85_04550 PF04055 Radical SAM superfamily SB85_04550 PF01938 TRAM domain SB85_04550 PF00919 Uncharacterized protein family UPF0004 SB85_04585 PF02130 Uncharacterized protein family UPF0054 SB85_04595 PF00571 CBS domain SB85_04595 PF03471 Transporter associated domain SB85_04610 PF00171 Aldehyde dehydrogenase family SB85_04615 PF00528 Binding-protein-dependent transport system inner membrane component SB85_04620 PF00528 Binding-protein-dependent transport system inner membrane component SB85_04625 PF08402 TOBE domain SB85_04625 PF00005 ABC transporter SB85_04630 PF02321 Outer membrane efflux protein SB85_04635 PF07690 Major Facilitator Superfamily SB85_04640 PF13533 Biotin-lipoyl like SB85_04645 PF13416 Bacterial extracellular solute-binding protein SB85_04650 PF00202 Aminotransferase class-III SB85_04665 PF00120 Glutamine synthetase, catalytic domain SB85_04670 PF07722 Peptidase C26 SB85_04675 PF00120 Glutamine synthetase, catalytic domain SB85_04680 PF01266 FAD dependent oxidoreductase SB85_04685 PF00990 Diguanylate cyclase, GGDEF domain SB85_04685 PF00072 Response regulator receiver domain SB85_04690 PF07690 Major Facilitator Superfamily SB85_04690 PF00083 Sugar (and other) transporter SB85_04700 PF00384 Molybdopterin oxidoreductase SB85_04705 PF02634 FdhD/NarQ family SB85_04725 PF00171 Aldehyde dehydrogenase family SB85_04730 PF01381 Helix-turn-helix SB85_04730 PF07883 Cupin domain SB85_04735 PF00202 Aminotransferase class-III SB85_04740 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SB85_04740 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SB85_04755 PF04286 Protein of unknown function (DUF445) SB85_04765 PF00072 Response regulator receiver domain SB85_04770 PF01170 Putative RNA methylase family UPF0020 SB85_04770 PF02926 THUMP domain SB85_04770 PF10672 S-adenosylmethionine-dependent methyltransferase SB85_04805 PF00581 Rhodanese-like domain SB85_04810 PF00293 NUDIX domain SB85_04815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SB85_04815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SB85_04820 PF00378 Enoyl-CoA hydratase/isomerase SB85_04830 PF00730 HhH-GPD superfamily base excision DNA repair protein SB85_04830 PF10576 Iron-sulfur binding domain of endonuclease III SB85_04830 PF00633 Helix-hairpin-helix motif SB85_04840 PF12849 PBP superfamily domain SB85_04845 PF12849 PBP superfamily domain SB85_04855 PF00528 Binding-protein-dependent transport system inner membrane component SB85_04860 PF00005 ABC transporter SB85_04865 PF01895 PhoU domain SB85_04875 PF05114 Protein of unknown function (DUF692) SB85_04885 PF00929 Exonuclease SB85_04900 PF00072 Response regulator receiver domain SB85_04900 PF00990 Diguanylate cyclase, GGDEF domain SB85_04905 PF08032 RNA 2'-O ribose methyltransferase substrate binding SB85_04905 PF00588 SpoU rRNA Methylase family SB85_04915 PF17876 Cold shock domain SB85_04915 PF00773 RNB domain SB85_04915 PF08206 Ribonuclease B OB domain SB85_04915 PF00575 S1 RNA binding domain SB85_04915 PF08461 Ribonuclease R winged-helix domain SB85_04925 PF06903 VirK protein SB85_04950 PF07690 Major Facilitator Superfamily SB85_04955 PF00529 HlyD membrane-fusion protein of T1SS SB85_04955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_04960 PF02321 Outer membrane efflux protein SB85_04965 PF01047 MarR family SB85_04975 PF03989 DNA gyrase C-terminal domain, beta-propeller SB85_04975 PF00521 DNA gyrase/topoisomerase IV, subunit A SB85_04985 PF00171 Aldehyde dehydrogenase family SB85_05000 PF00202 Aminotransferase class-III SB85_05005 PF00596 Class II Aldolase and Adducin N-terminal domain SB85_05010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SB85_05010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SB85_05025 PF00210 Ferritin-like domain SB85_05030 PF01804 Penicillin amidase SB85_05040 PF00990 Diguanylate cyclase, GGDEF domain SB85_05045 PF17151 Periplasmic sensor domain SB85_05045 PF00990 Diguanylate cyclase, GGDEF domain SB85_05055 PF00733 Asparagine synthase SB85_05055 PF13537 Glutamine amidotransferase domain SB85_05070 PF03960 ArsC family SB85_05080 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SB85_05080 PF14602 Hexapeptide repeat of succinyl-transferase SB85_05080 PF00132 Bacterial transferase hexapeptide (six repeats) SB85_05085 PF08335 GlnD PII-uridylyltransferase SB85_05085 PF01966 HD domain SB85_05085 PF01909 Nucleotidyltransferase domain SB85_05090 PF00557 Metallopeptidase family M24 SB85_05125 PF00318 Ribosomal protein S2 SB85_05130 PF00889 Elongation factor TS SB85_05135 PF00990 Diguanylate cyclase, GGDEF domain SB85_05135 PF00072 Response regulator receiver domain SB85_05140 PF00696 Amino acid kinase family SB85_05145 PF01765 Ribosome recycling factor SB85_05150 PF01255 Putative undecaprenyl diphosphate synthase SB85_05160 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SB85_05160 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SB85_05160 PF13288 DXP reductoisomerase C-terminal domain SB85_05165 PF02163 Peptidase family M50 SB85_05165 PF17820 PDZ domain SB85_05170 PF07244 Surface antigen variable number repeat SB85_05170 PF01103 Surface antigen SB85_05175 PF00132 Bacterial transferase hexapeptide (six repeats) SB85_05175 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SB85_05180 PF07977 FabA-like domain SB85_05185 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SB85_05185 PF00132 Bacterial transferase hexapeptide (six repeats) SB85_05190 PF02684 Lipid-A-disaccharide synthetase SB85_05195 PF01351 Ribonuclease HII SB85_05210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SB85_05265 PF03466 LysR substrate binding domain SB85_05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_05295 PF02547 Queuosine biosynthesis protein SB85_05305 PF00202 Aminotransferase class-III SB85_05320 PF02927 Cellulase N-terminal ig-like domain SB85_05320 PF00759 Glycosyl hydrolase family 9 SB85_05325 PF02321 Outer membrane efflux protein SB85_05330 PF13533 Biotin-lipoyl like SB85_05335 PF00873 AcrB/AcrD/AcrF family SB85_05340 PF00486 Transcriptional regulatory protein, C terminal SB85_05340 PF00072 Response regulator receiver domain SB85_05345 PF00512 His Kinase A (phospho-acceptor) domain SB85_05345 PF00672 HAMP domain SB85_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_05350 PF00753 Metallo-beta-lactamase superfamily SB85_05360 PF00037 4Fe-4S binding domain SB85_05380 PF01467 Cytidylyltransferase-like SB85_05390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_05390 PF00183 Hsp90 protein SB85_05395 PF02615 Malate/L-lactate dehydrogenase SB85_05400 PF07715 TonB-dependent Receptor Plug Domain SB85_05400 PF00593 TonB dependent receptor SB85_05415 PF04616 Glycosyl hydrolases family 43 SB85_05420 PF07532 Bacterial Ig-like domain (group 4) SB85_05425 PF00593 TonB dependent receptor SB85_05425 PF07715 TonB-dependent Receptor Plug Domain SB85_05445 PF13520 Amino acid permease SB85_05460 PF00557 Metallopeptidase family M24 SB85_05460 PF01321 Creatinase/Prolidase N-terminal domain SB85_05465 PF00171 Aldehyde dehydrogenase family SB85_05470 PF00701 Dihydrodipicolinate synthetase family SB85_05485 PF01266 FAD dependent oxidoreductase SB85_05490 PF05544 Proline racemase SB85_05500 PF02881 SRP54-type protein, helical bundle domain SB85_05500 PF00448 SRP54-type protein, GTPase domain SB85_05505 PF14815 NUDIX domain SB85_05505 PF00730 HhH-GPD superfamily base excision DNA repair protein SB85_05505 PF10576 Iron-sulfur binding domain of endonuclease III SB85_05505 PF00633 Helix-hairpin-helix motif SB85_05510 PF04362 Bacterial Fe(2+) trafficking SB85_05530 PF00570 HRDC domain SB85_05530 PF01612 3'-5' exonuclease SB85_05550 PF01584 CheW-like domain SB85_05555 PF02203 Tar ligand binding domain homologue SB85_05555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_05555 PF00672 HAMP domain SB85_05560 PF02203 Tar ligand binding domain homologue SB85_05560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_05560 PF00672 HAMP domain SB85_05575 PF00990 Diguanylate cyclase, GGDEF domain SB85_05575 PF03707 Bacterial signalling protein N terminal repeat SB85_05575 PF00563 EAL domain SB85_05575 PF13188 PAS domain SB85_05580 PF00575 S1 RNA binding domain SB85_05580 PF03725 3' exoribonuclease family, domain 2 SB85_05580 PF01138 3' exoribonuclease family, domain 1 SB85_05580 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SB85_05580 PF00013 KH domain SB85_05585 PF00312 Ribosomal protein S15 SB85_05590 PF16198 tRNA pseudouridylate synthase B C-terminal domain SB85_05590 PF01509 TruB family pseudouridylate synthase (N terminal domain) SB85_05590 PF09157 Pseudouridine synthase II TruB, C-terminal SB85_05595 PF02033 Ribosome-binding factor A SB85_05605 PF13184 NusA-like KH domain SB85_05605 PF08529 NusA N-terminal domain SB85_05605 PF00575 S1 RNA binding domain SB85_05610 PF02576 RimP N-terminal domain SB85_05610 PF17384 RimP C-terminal SH3 domain SB85_05620 PF00361 Proton-conducting membrane transporter SB85_05625 PF00361 Proton-conducting membrane transporter SB85_05625 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SB85_05630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SB85_05630 PF00361 Proton-conducting membrane transporter SB85_05635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SB85_05640 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SB85_05645 PF12838 4Fe-4S dicluster domain SB85_05650 PF00146 NADH dehydrogenase SB85_05655 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal SB85_05655 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SB85_05655 PF00384 Molybdopterin oxidoreductase SB85_05660 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SB85_05660 PF10531 SLBB domain SB85_05660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SB85_05670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SB85_05675 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SB85_05680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SB85_05685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SB85_05700 PF00121 Triosephosphate isomerase SB85_05740 PF17848 Acetyl-coA carboxylase zinc finger domain SB85_05740 PF01039 Carboxyl transferase domain SB85_05745 PF00290 Tryptophan synthase alpha chain SB85_05755 PF00291 Pyridoxal-phosphate dependent enzyme SB85_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_05760 PF03466 LysR substrate binding domain SB85_05765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SB85_05770 PF01416 tRNA pseudouridine synthase SB85_05785 PF02774 Semialdehyde dehydrogenase, dimerisation domain SB85_05785 PF01118 Semialdehyde dehydrogenase, NAD binding domain SB85_05790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SB85_05790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SB85_05800 PF05175 Methyltransferase small domain SB85_05805 PF02630 SCO1/SenC SB85_05810 PF02666 Phosphatidylserine decarboxylase SB85_05815 PF06737 Transglycosylase-like domain SB85_05820 PF05872 Bacterial protein of unknown function (DUF853) SB85_05830 PF00293 NUDIX domain SB85_05845 PF01272 Transcription elongation factor, GreA/GreB, C-term SB85_05845 PF03449 Transcription elongation factor, N-terminal SB85_05850 PF04055 Radical SAM superfamily SB85_05850 PF18693 TRAM domain SB85_05850 PF00919 Uncharacterized protein family UPF0004 SB85_05855 PF00144 Beta-lactamase SB85_05860 PF01738 Dienelactone hydrolase family SB85_05885 PF00692 dUTPase SB85_05890 PF10609 NUBPL iron-transfer P-loop NTPase SB85_05895 PF00593 TonB dependent receptor SB85_05895 PF07715 TonB-dependent Receptor Plug Domain SB85_05910 PF01431 Peptidase family M13 SB85_05910 PF05649 Peptidase family M13 SB85_05935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SB85_05935 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_05940 PF04235 Protein of unknown function (DUF418) SB85_05945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SB85_05950 PF00877 NlpC/P60 family SB85_05955 PF00877 NlpC/P60 family SB85_05960 PF01209 ubiE/COQ5 methyltransferase family SB85_05970 PF03061 Thioesterase superfamily SB85_05980 PF00375 Sodium:dicarboxylate symporter family SB85_05985 PF00245 Alkaline phosphatase SB85_06000 PF02609 Exonuclease VII small subunit SB85_06005 PF00348 Polyprenyl synthetase SB85_06010 PF14521 Lysine-specific metallo-endopeptidase SB85_06035 PF01523 Putative modulator of DNA gyrase SB85_06045 PF01523 Putative modulator of DNA gyrase SB85_06055 PF10150 Ribonuclease E/G family SB85_06055 PF00575 S1 RNA binding domain SB85_06060 PF02545 Maf-like protein SB85_06065 PF04402 Protein of unknown function (DUF541) SB85_06075 PF00593 TonB dependent receptor SB85_06075 PF07715 TonB-dependent Receptor Plug Domain SB85_06080 PF02590 Predicted SPOUT methyltransferase SB85_06095 PF01467 Cytidylyltransferase-like SB85_06110 PF08264 Anticodon-binding domain of tRNA SB85_06110 PF13603 Leucyl-tRNA synthetase, Domain 2 SB85_06110 PF00133 tRNA synthetases class I (I, L, M and V) SB85_06120 PF00085 Thioredoxin SB85_06140 PF02592 Putative vitamin uptake transporter SB85_06150 PF02574 Homocysteine S-methyltransferase SB85_06160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SB85_06170 PF09334 tRNA synthetases class I (M) SB85_06170 PF01588 Putative tRNA binding domain SB85_06200 PF04542 Sigma-70 region 2 SB85_06200 PF04545 Sigma-70, region 4 SB85_06245 PF01042 Endoribonuclease L-PSP SB85_06255 PF03706 Lysylphosphatidylglycerol synthase TM region SB85_06295 PF07690 Major Facilitator Superfamily SB85_06300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SB85_06305 PF03831 PhnA domain SB85_06305 PF08274 PhnA Zinc-Ribbon SB85_06315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SB85_06350 PF01258 Prokaryotic dksA/traR C4-type zinc finger SB85_06360 PF01863 Protein of unknown function DUF45 SB85_06365 PF01479 S4 domain SB85_06365 PF00849 RNA pseudouridylate synthase SB85_06375 PF13360 PQQ-like domain SB85_06380 PF00593 TonB dependent receptor SB85_06380 PF07715 TonB-dependent Receptor Plug Domain SB85_06390 PF07043 Protein of unknown function (DUF1328) SB85_06400 PF02163 Peptidase family M50 SB85_06415 PF02310 B12 binding domain SB85_06415 PF01642 Methylmalonyl-CoA mutase SB85_06425 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SB85_06425 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SB85_06435 PF02803 Thiolase, C-terminal domain SB85_06435 PF00108 Thiolase, N-terminal domain SB85_06460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_06460 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_06460 PF18158 Adaptive response protein AidB N-terminal domain SB85_06465 PF04679 ATP dependent DNA ligase C terminal region SB85_06465 PF01068 ATP dependent DNA ligase domain SB85_06465 PF04675 DNA ligase N terminus SB85_06470 PF04679 ATP dependent DNA ligase C terminal region SB85_06470 PF01068 ATP dependent DNA ligase domain SB85_06470 PF04675 DNA ligase N terminus SB85_06475 PF00271 Helicase conserved C-terminal domain SB85_06475 PF00270 DEAD/DEAH box helicase SB85_06475 PF08494 DEAD/H associated SB85_06490 PF01494 FAD binding domain SB85_06495 PF00313 'Cold-shock' DNA-binding domain SB85_06500 PF01048 Phosphorylase superfamily SB85_06510 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_06525 PF05958 tRNA (Uracil-5-)-methyltransferase SB85_06535 PF07715 TonB-dependent Receptor Plug Domain SB85_06535 PF00593 TonB dependent receptor SB85_06540 PF11967 Recombination protein O N terminal SB85_06540 PF02565 Recombination protein O C terminal SB85_06545 PF07650 KH domain SB85_06545 PF01926 50S ribosome-binding GTPase SB85_06550 PF00035 Double-stranded RNA binding motif SB85_06550 PF14622 Ribonuclease-III-like SB85_06560 PF10502 Signal peptidase, peptidase S26 SB85_06565 PF00679 Elongation factor G C-terminus SB85_06565 PF00009 Elongation factor Tu GTP binding domain SB85_06565 PF03144 Elongation factor Tu domain 2 SB85_06565 PF06421 GTP-binding protein LepA C-terminus SB85_06570 PF13180 PDZ domain SB85_06580 PF04542 Sigma-70 region 2 SB85_06580 PF08281 Sigma-70, region 4 SB85_06585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SB85_06585 PF00378 Enoyl-CoA hydratase/isomerase SB85_06585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SB85_06590 PF01545 Cation efflux family SB85_06600 PF03601 Conserved hypothetical protein 698 SB85_06605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_06605 PF03466 LysR substrate binding domain SB85_06615 PF07745 Glycosyl hydrolase family 53 SB85_06630 PF01624 MutS domain I SB85_06630 PF05188 MutS domain II SB85_06630 PF05192 MutS domain III SB85_06630 PF00488 MutS domain V SB85_06630 PF05190 MutS family domain IV SB85_06635 PF13417 Glutathione S-transferase, N-terminal domain SB85_06645 PF00004 ATPase family associated with various cellular activities (AAA) SB85_06645 PF07724 AAA domain (Cdc48 subfamily) SB85_06645 PF02861 Clp amino terminal domain, pathogenicity island component SB85_06645 PF10431 C-terminal, D2-small domain, of ClpB protein SB85_06645 PF17871 AAA lid domain SB85_06655 PF01479 S4 domain SB85_06660 PF01554 MatE SB85_06665 PF01245 Ribosomal protein L19 SB85_06670 PF01746 tRNA (Guanine-1)-methyltransferase SB85_06675 PF05239 PRC-barrel domain SB85_06675 PF01782 RimM N-terminal domain SB85_06680 PF00886 Ribosomal protein S16 SB85_06690 PF03060 Nitronate monooxygenase SB85_06705 PF02881 SRP54-type protein, helical bundle domain SB85_06705 PF02978 Signal peptide binding domain SB85_06705 PF00448 SRP54-type protein, GTPase domain SB85_06710 PF01578 Cytochrome C assembly protein SB85_06725 PF06964 Alpha-L-arabinofuranosidase C-terminal domain SB85_06740 PF00679 Elongation factor G C-terminus SB85_06740 PF00009 Elongation factor Tu GTP binding domain SB85_06740 PF14492 Elongation Factor G, domain II SB85_06740 PF03144 Elongation factor Tu domain 2 SB85_06740 PF03764 Elongation factor G, domain IV SB85_06745 PF00999 Sodium/hydrogen exchanger family SB85_06755 PF13417 Glutathione S-transferase, N-terminal domain SB85_06755 PF00043 Glutathione S-transferase, C-terminal domain SB85_06765 PF02653 Branched-chain amino acid transport system / permease component SB85_06770 PF02653 Branched-chain amino acid transport system / permease component SB85_06775 PF00005 ABC transporter SB85_06780 PF13407 Periplasmic binding protein domain SB85_06785 PF00171 Aldehyde dehydrogenase family SB85_06795 PF03466 LysR substrate binding domain SB85_06795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_06805 PF00920 Dehydratase family SB85_06810 PF08281 Sigma-70, region 4 SB85_06810 PF04542 Sigma-70 region 2 SB85_06820 PF07715 TonB-dependent Receptor Plug Domain SB85_06820 PF07660 Secretin and TonB N terminus short domain SB85_06820 PF00593 TonB dependent receptor SB85_06825 PF00328 Histidine phosphatase superfamily (branch 2) SB85_06845 PF18073 Rubredoxin metal binding domain SB85_06855 PF00574 Clp protease SB85_06860 PF08281 Sigma-70, region 4 SB85_06860 PF04542 Sigma-70 region 2 SB85_06860 PF12680 SnoaL-like domain SB85_06865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SB85_06870 PF00510 Cytochrome c oxidase subunit III SB85_06875 PF00115 Cytochrome C and Quinol oxidase polypeptide I SB85_06880 PF06481 COX Aromatic Rich Motif SB85_06880 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SB85_06900 PF02401 LytB protein SB85_06905 PF01252 Signal peptidase (SPase) II SB85_06910 PF06827 Zinc finger found in FPG and IleRS SB85_06910 PF00133 tRNA synthetases class I (I, L, M and V) SB85_06910 PF08264 Anticodon-binding domain of tRNA SB85_06915 PF06574 FAD synthetase SB85_06915 PF01687 Riboflavin kinase SB85_06920 PF03023 Lipid II flippase MurJ SB85_06925 PF01649 Ribosomal protein S20 SB85_06930 PF01926 50S ribosome-binding GTPase SB85_06930 PF01018 GTP1/OBG SB85_06935 PF01016 Ribosomal L27 protein SB85_06940 PF00829 Ribosomal prokaryotic L21 protein SB85_06945 PF00005 ABC transporter SB85_06945 PF17755 UvrA DNA-binding domain SB85_06945 PF17760 UvrA interaction domain SB85_06960 PF00378 Enoyl-CoA hydratase/isomerase SB85_06980 PF04376 Arginine-tRNA-protein transferase, N terminus SB85_06980 PF04377 Arginine-tRNA-protein transferase, C terminus SB85_06995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_06995 PF08447 PAS fold SB85_07015 PF02222 ATP-grasp domain SB85_07015 PF01370 NAD dependent epimerase/dehydratase family SB85_07020 PF00355 Rieske [2Fe-2S] domain SB85_07020 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SB85_07045 PF13026 Protein of unknown function (DUF3887) SB85_07045 PF12146 Serine aminopeptidase, S33 SB85_07055 PF01636 Phosphotransferase enzyme family SB85_07085 PF00196 Bacterial regulatory proteins, luxR family SB85_07085 PF00072 Response regulator receiver domain SB85_07090 PF07730 Histidine kinase SB85_07100 PF05209 Septum formation inhibitor MinC, N-terminal domain SB85_07100 PF03775 Septum formation inhibitor MinC, C-terminal domain SB85_07105 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SB85_07110 PF03776 Septum formation topological specificity factor MinE SB85_07120 PF13493 Domain of unknown function (DUF4118) SB85_07120 PF02702 Osmosensitive K+ channel His kinase sensor domain SB85_07120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_07120 PF00512 His Kinase A (phospho-acceptor) domain SB85_07125 PF00072 Response regulator receiver domain SB85_07125 PF00486 Transcriptional regulatory protein, C terminal SB85_07135 PF00884 Sulfatase SB85_07135 PF08019 Phosphoethanolamine transferase EptA/EptB SB85_07155 PF07690 Major Facilitator Superfamily SB85_07160 PF02347 Glycine cleavage system P-protein SB85_07165 PF00199 Catalase SB85_07165 PF06628 Catalase-related immune-responsive SB85_07165 PF18011 C-terminal domain found in long catalases SB85_07170 PF08240 Alcohol dehydrogenase GroES-like domain SB85_07170 PF00107 Zinc-binding dehydrogenase SB85_07170 PF13823 Alcohol dehydrogenase GroES-associated SB85_07190 PF17755 UvrA DNA-binding domain SB85_07230 PF11867 Domain of unknown function (DUF3387) SB85_07230 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SB85_07230 PF18766 SWI2/SNF2 ATPase SB85_07235 PF17191 RecG wedge domain SB85_07235 PF13749 Putative ATP-dependent DNA helicase recG C-terminal SB85_07235 PF00270 DEAD/DEAH box helicase SB85_07245 PF02384 N-6 DNA Methylase SB85_07280 PF00709 Adenylosuccinate synthetase SB85_07290 PF01145 SPFH domain / Band 7 family SB85_07295 PF12221 Bacterial membrane protein N terminal SB85_07295 PF01145 SPFH domain / Band 7 family SB85_07300 PF00107 Zinc-binding dehydrogenase SB85_07300 PF08240 Alcohol dehydrogenase GroES-like domain SB85_07305 PF00072 Response regulator receiver domain SB85_07310 PF01556 DnaJ C terminal domain SB85_07310 PF00226 DnaJ domain SB85_07320 PF08534 Redoxin SB85_07335 PF00905 Penicillin binding protein transpeptidase domain SB85_07335 PF00912 Transglycosylase SB85_07335 PF06832 Penicillin-Binding Protein C-terminus Family SB85_07340 PF00989 PAS fold SB85_07340 PF00512 His Kinase A (phospho-acceptor) domain SB85_07340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_07355 PF00005 ABC transporter SB85_07355 PF02687 FtsX-like permease family SB85_07355 PF12704 MacB-like periplasmic core domain SB85_07380 PF07703 Alpha-2-macroglobulin bait region domain SB85_07380 PF17962 Bacterial macroglobulin domain 6 SB85_07380 PF01835 MG2 domain SB85_07380 PF00207 Alpha-2-macroglobulin family SB85_07380 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SB85_07380 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SB85_07380 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SB85_07380 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SB85_07390 PF00593 TonB dependent receptor SB85_07390 PF07715 TonB-dependent Receptor Plug Domain SB85_07400 PF04303 PrpF protein SB85_07405 PF00694 Aconitase C-terminal domain SB85_07405 PF00330 Aconitase family (aconitate hydratase) SB85_07410 PF00285 Citrate synthase, C-terminal domain SB85_07445 PF01726 LexA DNA binding domain SB85_07445 PF00717 Peptidase S24-like SB85_07460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SB85_07460 PF14579 Helix-hairpin-helix motif SB85_07460 PF07733 Bacterial DNA polymerase III alpha NTPase domain SB85_07460 PF02811 PHP domain SB85_07465 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SB85_07465 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SB85_07470 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SB85_07475 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SB85_07490 PF09115 DNA polymerase III, delta subunit, C terminal SB85_07495 PF02223 Thymidylate kinase SB85_07500 PF02618 YceG-like family SB85_07505 PF00425 chorismate binding enzyme SB85_07505 PF04715 Anthranilate synthase component I, N terminal region SB85_07510 PF00109 Beta-ketoacyl synthase, N-terminal domain SB85_07510 PF02801 Beta-ketoacyl synthase, C-terminal domain SB85_07515 PF00550 Phosphopantetheine attachment site SB85_07525 PF00698 Acyl transferase domain SB85_07535 PF01783 Ribosomal L32p protein family SB85_07540 PF02620 Large ribosomal RNA subunit accumulation protein YceD SB85_07545 PF02545 Maf-like protein SB85_07565 PF17863 AAA lid domain SB85_07565 PF07726 ATPase family associated with various cellular activities (AAA) SB85_07575 PF13559 Domain of unknown function (DUF4129) SB85_07575 PF11992 Domain of unknown function (DUF3488) SB85_07575 PF01841 Transglutaminase-like superfamily SB85_07585 PF01230 HIT domain SB85_07590 PF02132 RecR protein SB85_07590 PF13662 Toprim domain SB85_07595 PF02575 YbaB/EbfC DNA-binding family SB85_07600 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SB85_07600 PF12169 DNA polymerase III subunits gamma and tau domain III SB85_07600 PF12170 DNA polymerase III tau subunit V interacting with alpha SB85_07610 PF02391 MoaE protein SB85_07615 PF02597 ThiS family SB85_07620 PF01967 MoaC family SB85_07630 PF04055 Radical SAM superfamily SB85_07630 PF06463 Molybdenum Cofactor Synthesis C SB85_07635 PF12706 Beta-lactamase superfamily domain SB85_07645 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SB85_07670 PF00929 Exonuclease SB85_07675 PF00075 RNase H SB85_07685 PF00753 Metallo-beta-lactamase superfamily SB85_07685 PF16123 Hydroxyacylglutathione hydrolase C-terminus SB85_07695 PF13145 PPIC-type PPIASE domain SB85_07715 PF00216 Bacterial DNA-binding protein SB85_07720 PF05362 Lon protease (S16) C-terminal proteolytic domain SB85_07720 PF00004 ATPase family associated with various cellular activities (AAA) SB85_07720 PF02190 ATP-dependent protease La (LON) substrate-binding domain SB85_07725 PF07724 AAA domain (Cdc48 subfamily) SB85_07725 PF06689 ClpX C4-type zinc finger SB85_07725 PF10431 C-terminal, D2-small domain, of ClpB protein SB85_07730 PF00574 Clp protease SB85_07735 PF05698 Bacterial trigger factor protein (TF) C-terminus SB85_07735 PF05697 Bacterial trigger factor protein (TF) SB85_07775 PF00180 Isocitrate/isopropylmalate dehydrogenase SB85_07775 PF18324 Hypothetical protein TT1725 SB85_07790 PF01435 Peptidase family M48 SB85_07790 PF13181 Tetratricopeptide repeat SB85_07795 PF00486 Transcriptional regulatory protein, C terminal SB85_07795 PF00072 Response regulator receiver domain SB85_07800 PF00989 PAS fold SB85_07800 PF11808 Phosphate regulon sensor protein PhoR SB85_07800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_07800 PF00512 His Kinase A (phospho-acceptor) domain SB85_07810 PF02541 Ppx/GppA phosphatase family SB85_07815 PF00534 Glycosyl transferases group 1 SB85_07815 PF13439 Glycosyltransferase Family 4 SB85_07820 PF01569 PAP2 superfamily SB85_07825 PF00149 Calcineurin-like phosphoesterase SB85_07840 PF04305 Protein of unknown function (DUF455) SB85_07850 PF00156 Phosphoribosyl transferase domain SB85_07865 PF08245 Mur ligase middle domain SB85_07865 PF02875 Mur ligase family, glutamate ligase domain SB85_07870 PF00300 Histidine phosphatase superfamily (branch 1) SB85_07875 PF10459 Peptidase S46 SB85_07880 PF08240 Alcohol dehydrogenase GroES-like domain SB85_07880 PF00107 Zinc-binding dehydrogenase SB85_07890 PF12857 TOBE-like domain SB85_07890 PF17850 CysA C-terminal regulatory domain SB85_07890 PF00005 ABC transporter SB85_07895 PF00528 Binding-protein-dependent transport system inner membrane component SB85_07900 PF00528 Binding-protein-dependent transport system inner membrane component SB85_07920 PF00849 RNA pseudouridylate synthase SB85_07930 PF05736 OprF membrane domain SB85_07930 PF00691 OmpA family SB85_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_07935 PF03466 LysR substrate binding domain SB85_07950 PF00248 Aldo/keto reductase family SB85_07955 PF00107 Zinc-binding dehydrogenase SB85_07955 PF08240 Alcohol dehydrogenase GroES-like domain SB85_07980 PF03009 Glycerophosphoryl diester phosphodiesterase family SB85_08000 PF00043 Glutathione S-transferase, C-terminal domain SB85_08000 PF02798 Glutathione S-transferase, N-terminal domain SB85_08005 PF13193 AMP-binding enzyme C-terminal domain SB85_08005 PF00501 AMP-binding enzyme SB85_08005 PF16177 Acetyl-coenzyme A synthetase N-terminus SB85_08020 PF00043 Glutathione S-transferase, C-terminal domain SB85_08020 PF02798 Glutathione S-transferase, N-terminal domain SB85_08030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SB85_08030 PF00056 lactate/malate dehydrogenase, NAD binding domain SB85_08040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SB85_08065 PF01474 Class-II DAHP synthetase family SB85_08080 PF02600 Disulfide bond formation protein DsbB SB85_08085 PF01196 Ribosomal protein L17 SB85_08090 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SB85_08090 PF01000 RNA polymerase Rpb3/RpoA insert domain SB85_08090 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SB85_08095 PF00163 Ribosomal protein S4/S9 N-terminal domain SB85_08095 PF01479 S4 domain SB85_08100 PF00411 Ribosomal protein S11 SB85_08105 PF00416 Ribosomal protein S13/S18 SB85_08110 PF00344 SecY translocase SB85_08115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SB85_08120 PF00327 Ribosomal protein L30p/L7e SB85_08125 PF03719 Ribosomal protein S5, C-terminal domain SB85_08125 PF00333 Ribosomal protein S5, N-terminal domain SB85_08130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SB85_08135 PF00347 Ribosomal protein L6 SB85_08140 PF00410 Ribosomal protein S8 SB85_08145 PF00253 Ribosomal protein S14p/S29e SB85_08150 PF00673 ribosomal L5P family C-terminus SB85_08150 PF00281 Ribosomal protein L5 SB85_08155 PF00467 KOW motif SB85_08155 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SB85_08160 PF00238 Ribosomal protein L14p/L23e SB85_08165 PF00366 Ribosomal protein S17 SB85_08170 PF00831 Ribosomal L29 protein SB85_08175 PF00252 Ribosomal protein L16p/L10e SB85_08180 PF00189 Ribosomal protein S3, C-terminal domain SB85_08180 PF07650 KH domain SB85_08185 PF00237 Ribosomal protein L22p/L17e SB85_08190 PF00203 Ribosomal protein S19 SB85_08195 PF00181 Ribosomal Proteins L2, RNA binding domain SB85_08195 PF03947 Ribosomal Proteins L2, C-terminal domain SB85_08200 PF00276 Ribosomal protein L23 SB85_08205 PF00573 Ribosomal protein L4/L1 family SB85_08215 PF00338 Ribosomal protein S10p/S20e SB85_08220 PF00009 Elongation factor Tu GTP binding domain SB85_08220 PF03144 Elongation factor Tu domain 2 SB85_08220 PF03143 Elongation factor Tu C-terminal domain SB85_08225 PF00679 Elongation factor G C-terminus SB85_08225 PF14492 Elongation Factor G, domain II SB85_08225 PF03764 Elongation factor G, domain IV SB85_08225 PF00009 Elongation factor Tu GTP binding domain SB85_08225 PF03144 Elongation factor Tu domain 2 SB85_08230 PF00177 Ribosomal protein S7p/S5e SB85_08235 PF00164 Ribosomal protein S12/S23 SB85_08240 PF04997 RNA polymerase Rpb1, domain 1 SB85_08240 PF04998 RNA polymerase Rpb1, domain 5 SB85_08240 PF00623 RNA polymerase Rpb1, domain 2 SB85_08240 PF05000 RNA polymerase Rpb1, domain 4 SB85_08240 PF04983 RNA polymerase Rpb1, domain 3 SB85_08245 PF04560 RNA polymerase Rpb2, domain 7 SB85_08245 PF00562 RNA polymerase Rpb2, domain 6 SB85_08245 PF10385 RNA polymerase beta subunit external 1 domain SB85_08245 PF04565 RNA polymerase Rpb2, domain 3 SB85_08245 PF04561 RNA polymerase Rpb2, domain 2 SB85_08245 PF04563 RNA polymerase beta subunit SB85_08250 PF00542 Ribosomal protein L7/L12 C-terminal domain SB85_08250 PF16320 Ribosomal protein L7/L12 dimerisation domain SB85_08255 PF00466 Ribosomal protein L10 SB85_08260 PF00687 Ribosomal protein L1p/L10e family SB85_08265 PF03946 Ribosomal protein L11, N-terminal domain SB85_08265 PF00298 Ribosomal protein L11, RNA binding domain SB85_08270 PF00467 KOW motif SB85_08270 PF02357 Transcription termination factor nusG SB85_08275 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SB85_08285 PF03143 Elongation factor Tu C-terminal domain SB85_08285 PF03144 Elongation factor Tu domain 2 SB85_08285 PF00009 Elongation factor Tu GTP binding domain SB85_08305 PF06071 Protein of unknown function (DUF933) SB85_08305 PF01926 50S ribosome-binding GTPase SB85_08310 PF01195 Peptidyl-tRNA hydrolase SB85_08315 PF14693 Ribosomal protein TL5, C-terminal domain SB85_08315 PF01386 Ribosomal L25p family SB85_08320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SB85_08320 PF14572 Phosphoribosyl synthetase-associated domain SB85_08330 PF08544 GHMP kinases C terminal SB85_08330 PF00288 GHMP kinases N terminal domain SB85_08335 PF03550 Outer membrane lipoprotein LolB SB85_08345 PF01488 Shikimate / quinate 5-dehydrogenase SB85_08345 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SB85_08345 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SB85_08350 PF03462 PCRF domain SB85_08350 PF00472 RF-1 domain SB85_08370 PF00994 Probable molybdopterin binding domain SB85_08380 PF03976 Polyphosphate kinase 2 (PPK2) SB85_08390 PF03631 Virulence factor BrkB SB85_08395 PF03358 NADPH-dependent FMN reductase SB85_08410 PF04073 Aminoacyl-tRNA editing domain SB85_08415 PF04151 Bacterial pre-peptidase C-terminal domain SB85_08415 PF00082 Subtilase family SB85_08420 PF04151 Bacterial pre-peptidase C-terminal domain SB85_08420 PF00082 Subtilase family SB85_08425 PF01063 Amino-transferase class IV SB85_08440 PF02233 NAD(P) transhydrogenase beta subunit SB85_08445 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SB85_08465 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SB85_08465 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SB85_08485 PF00476 DNA polymerase family A SB85_08485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SB85_08485 PF01612 3'-5' exonuclease SB85_08485 PF01367 5'-3' exonuclease, C-terminal SAM fold SB85_08490 PF00293 NUDIX domain SB85_08500 PF07690 Major Facilitator Superfamily SB85_08505 PF03466 LysR substrate binding domain SB85_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_08515 PF00561 alpha/beta hydrolase fold SB85_08530 PF05175 Methyltransferase small domain SB85_08530 PF17827 PrmC N-terminal domain SB85_08535 PF00578 AhpC/TSA family SB85_08535 PF10417 C-terminal domain of 1-Cys peroxiredoxin SB85_08540 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_08540 PF13192 Thioredoxin domain SB85_08545 PF03466 LysR substrate binding domain SB85_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_08550 PF01272 Transcription elongation factor, GreA/GreB, C-term SB85_08550 PF14760 Rnk N-terminus SB85_08555 PF00923 Transaldolase/Fructose-6-phosphate aldolase SB85_08575 PF01625 Peptide methionine sulfoxide reductase SB85_08585 PF00196 Bacterial regulatory proteins, luxR family SB85_08585 PF00072 Response regulator receiver domain SB85_08590 PF01627 Hpt domain SB85_08590 PF00512 His Kinase A (phospho-acceptor) domain SB85_08590 PF17149 Periplasmic sensor domain found in signal transduction proteins SB85_08590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_08590 PF00672 HAMP domain SB85_08590 PF00072 Response regulator receiver domain SB85_08595 PF00990 Diguanylate cyclase, GGDEF domain SB85_08595 PF00072 Response regulator receiver domain SB85_08605 PF00749 tRNA synthetases class I (E and Q), catalytic domain SB85_08605 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SB85_08615 PF00892 EamA-like transporter family SB85_08635 PF01728 FtsJ-like methyltransferase SB85_08635 PF18125 RlmM ferredoxin-like domain SB85_08640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SB85_08640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SB85_08670 PF01494 FAD binding domain SB85_08675 PF01494 FAD binding domain SB85_08685 PF01923 Cobalamin adenosyltransferase SB85_08690 PF00850 Histone deacetylase domain SB85_08695 PF04453 LPS transport system D SB85_08695 PF03968 OstA-like protein SB85_08705 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SB85_08710 PF00398 Ribosomal RNA adenine dimethylase SB85_08715 PF04379 ApaG domain SB85_08720 PF00149 Calcineurin-like phosphoesterase SB85_08725 PF00186 Dihydrofolate reductase SB85_08730 PF00303 Thymidylate synthase SB85_08735 PF01790 Prolipoprotein diacylglyceryl transferase SB85_08750 PF04011 LemA family SB85_08755 PF03741 Integral membrane protein TerC family SB85_08760 PF01219 Prokaryotic diacylglycerol kinase SB85_08770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_08770 PF08521 Two-component sensor kinase N-terminal SB85_08770 PF00512 His Kinase A (phospho-acceptor) domain SB85_08775 PF00072 Response regulator receiver domain SB85_08775 PF00486 Transcriptional regulatory protein, C terminal SB85_08780 PF13472 GDSL-like Lipase/Acylhydrolase family SB85_08785 PF00005 ABC transporter SB85_08805 PF07715 TonB-dependent Receptor Plug Domain SB85_08805 PF00593 TonB dependent receptor SB85_08815 PF00248 Aldo/keto reductase family SB85_08820 PF07662 Na+ dependent nucleoside transporter C-terminus SB85_08820 PF01773 Na+ dependent nucleoside transporter N-terminus SB85_08820 PF07670 Nucleoside recognition SB85_08825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SB85_08825 PF00294 pfkB family carbohydrate kinase SB85_08835 PF01207 Dihydrouridine synthase (Dus) SB85_08840 PF13847 Methyltransferase domain SB85_08880 PF00438 S-adenosylmethionine synthetase, N-terminal domain SB85_08880 PF02772 S-adenosylmethionine synthetase, central domain SB85_08880 PF02773 S-adenosylmethionine synthetase, C-terminal domain SB85_08915 PF00311 Phosphoenolpyruvate carboxylase SB85_08925 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SB85_08925 PF05221 S-adenosyl-L-homocysteine hydrolase SB85_08945 PF00685 Sulfotransferase domain SB85_08960 PF00672 HAMP domain SB85_08960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_08975 PF00128 Alpha amylase, catalytic domain SB85_08980 PF02219 Methylenetetrahydrofolate reductase SB85_08990 PF00293 NUDIX domain SB85_09000 PF01043 SecA preprotein cross-linking domain SB85_09000 PF02810 SEC-C motif SB85_09000 PF07517 SecA DEAD-like domain SB85_09000 PF07516 SecA Wing and Scaffold domain SB85_09005 PF01551 Peptidase family M23 SB85_09005 PF01476 LysM domain SB85_09005 PF08525 Opacity-associated protein A N-terminal motif SB85_09015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SB85_09020 PF12327 FtsZ family, C-terminal domain SB85_09020 PF00091 Tubulin/FtsZ family, GTPase domain SB85_09025 PF02491 SHS2 domain inserted in FTSA SB85_09030 PF08478 POTRA domain, FtsQ-type SB85_09030 PF03799 Cell division protein FtsQ SB85_09035 PF07478 D-ala D-ala ligase C-terminus SB85_09035 PF01820 D-ala D-ala ligase N-terminus SB85_09040 PF01225 Mur ligase family, catalytic domain SB85_09040 PF08245 Mur ligase middle domain SB85_09040 PF02875 Mur ligase family, glutamate ligase domain SB85_09045 PF03033 Glycosyltransferase family 28 N-terminal domain SB85_09045 PF04101 Glycosyltransferase family 28 C-terminal domain SB85_09050 PF01098 Cell cycle protein SB85_09055 PF00953 Glycosyl transferase family 4 SB85_09060 PF08245 Mur ligase middle domain SB85_09060 PF02875 Mur ligase family, glutamate ligase domain SB85_09060 PF01225 Mur ligase family, catalytic domain SB85_09065 PF01225 Mur ligase family, catalytic domain SB85_09065 PF02875 Mur ligase family, glutamate ligase domain SB85_09065 PF08245 Mur ligase middle domain SB85_09070 PF03717 Penicillin-binding Protein dimerisation domain SB85_09070 PF00905 Penicillin binding protein transpeptidase domain SB85_09075 PF04999 Cell division protein FtsL SB85_09080 PF01795 MraW methylase family SB85_09085 PF02381 MraZ protein, putative antitoxin-like SB85_09105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SB85_09115 PF02021 Uncharacterised protein family UPF0102 SB85_09120 PF04307 LexA-binding, inner membrane-associated putative hydrolase SB85_09125 PF02913 FAD linked oxidases, C-terminal domain SB85_09125 PF01565 FAD binding domain SB85_09130 PF00486 Transcriptional regulatory protein, C terminal SB85_09130 PF00072 Response regulator receiver domain SB85_09135 PF13493 Domain of unknown function (DUF4118) SB85_09135 PF02702 Osmosensitive K+ channel His kinase sensor domain SB85_09135 PF13492 GAF domain SB85_09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_09135 PF00512 His Kinase A (phospho-acceptor) domain SB85_09140 PF02669 K+-transporting ATPase, c chain SB85_09150 PF03814 Potassium-transporting ATPase A subunit SB85_09170 PF00586 AIR synthase related protein, N-terminal domain SB85_09170 PF02769 AIR synthase related protein, C-terminal domain SB85_09175 PF01029 NusB family SB85_09180 PF00885 6,7-dimethyl-8-ribityllumazine synthase SB85_09185 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SB85_09185 PF00925 GTP cyclohydrolase II SB85_09190 PF00677 Lumazine binding domain SB85_09195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SB85_09195 PF01872 RibD C-terminal domain SB85_09205 PF03477 ATP cone domain SB85_09210 PF00464 Serine hydroxymethyltransferase SB85_09310 PF01327 Polypeptide deformylase SB85_09315 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SB85_09320 PF01270 Glycosyl hydrolases family 8 SB85_09325 PF03170 Bacterial cellulose synthase subunit SB85_09330 PF07238 PilZ domain SB85_09330 PF00535 Glycosyl transferase family 2 SB85_09330 PF03552 Cellulose synthase SB85_09345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SB85_09345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SB85_09395 PF00392 Bacterial regulatory proteins, gntR family SB85_09395 PF07702 UTRA domain SB85_09405 PF03958 Bacterial type II/III secretion system short domain SB85_09405 PF00263 Bacterial type II and III secretion system protein SB85_09415 PF10741 Type II secretion system (T2SS), protein M subtype b SB85_09420 PF05137 Fimbrial assembly protein (PilN) SB85_09435 PF07963 Prokaryotic N-terminal methylation motif SB85_09440 PF12019 Type II transport protein GspH SB85_09445 PF08334 Type II secretion system (T2SS), protein G SB85_09450 PF00482 Type II secretion system (T2SS), protein F SB85_09455 PF00437 Type II/IV secretion system protein SB85_09455 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SB85_09460 PF00082 Subtilase family SB85_09460 PF04151 Bacterial pre-peptidase C-terminal domain SB85_09465 PF05662 Coiled stalk of trimeric autotransporter adhesin SB85_09465 PF05658 Head domain of trimeric autotransporter adhesin SB85_09465 PF13018 Extended Signal Peptide of Type V secretion system SB85_09465 PF03895 YadA-like membrane anchor domain SB85_09470 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SB85_09470 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SB85_09470 PF02769 AIR synthase related protein, C-terminal domain SB85_09475 PF10411 Disulfide bond isomerase protein N-terminus SB85_09475 PF13098 Thioredoxin-like domain SB85_09485 PF00589 Phage integrase family SB85_09485 PF02899 Phage integrase, N-terminal SAM-like domain SB85_09510 PF00883 Cytosol aminopeptidase family, catalytic domain SB85_09510 PF02789 Cytosol aminopeptidase family, N-terminal domain SB85_09515 PF04364 DNA polymerase III chi subunit, HolC SB85_09530 PF08264 Anticodon-binding domain of tRNA SB85_09530 PF00133 tRNA synthetases class I (I, L, M and V) SB85_09530 PF10458 Valyl tRNA synthetase tRNA binding arm SB85_09540 PF00544 Pectate lyase SB85_09555 PF01066 CDP-alcohol phosphatidyltransferase SB85_09565 PF04073 Aminoacyl-tRNA editing domain SB85_09565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SB85_09565 PF03129 Anticodon binding domain SB85_09570 PF00816 H-NS histone family SB85_09580 PF02405 Permease MlaE SB85_09585 PF00005 ABC transporter SB85_09590 PF02470 MlaD protein SB85_09590 PF03886 ABC-type transport auxiliary lipoprotein component SB85_09610 PF14307 Glycosyltransferase WbsX SB85_09610 PF05045 Rhamnan synthesis protein F SB85_09615 PF01144 Coenzyme A transferase SB85_09620 PF01144 Coenzyme A transferase SB85_09625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SB85_09625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SB85_09625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SB85_09625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SB85_09630 PF00483 Nucleotidyl transferase SB85_09630 PF01050 Mannose-6-phosphate isomerase SB85_09635 PF04321 RmlD substrate binding domain SB85_09640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SB85_09645 PF00483 Nucleotidyl transferase SB85_09650 PF16363 GDP-mannose 4,6 dehydratase SB85_09655 PF01012 Electron transfer flavoprotein domain SB85_09660 PF00766 Electron transfer flavoprotein FAD-binding domain SB85_09660 PF01012 Electron transfer flavoprotein domain SB85_09685 PF00005 ABC transporter SB85_09690 PF01061 ABC-2 type transporter SB85_09695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SB85_09695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SB85_09695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SB85_09720 PF16363 GDP-mannose 4,6 dehydratase SB85_09725 PF16363 GDP-mannose 4,6 dehydratase SB85_09730 PF16363 GDP-mannose 4,6 dehydratase SB85_09750 PF01053 Cys/Met metabolism PLP-dependent enzyme SB85_09755 PF00571 CBS domain SB85_09755 PF00291 Pyridoxal-phosphate dependent enzyme SB85_09775 PF00437 Type II/IV secretion system protein SB85_09780 PF14497 Glutathione S-transferase, C-terminal domain SB85_09780 PF02798 Glutathione S-transferase, N-terminal domain SB85_09790 PF00270 DEAD/DEAH box helicase SB85_09790 PF00271 Helicase conserved C-terminal domain SB85_09795 PF01242 6-pyruvoyl tetrahydropterin synthase SB85_09810 PF13185 GAF domain SB85_09820 PF00593 TonB dependent receptor SB85_09820 PF07715 TonB-dependent Receptor Plug Domain SB85_09825 PF13419 Haloacid dehalogenase-like hydrolase SB85_09830 PF11799 impB/mucB/samB family C-terminal domain SB85_09830 PF11798 IMS family HHH motif SB85_09830 PF00817 impB/mucB/samB family SB85_09835 PF07977 FabA-like domain SB85_09840 PF02801 Beta-ketoacyl synthase, C-terminal domain SB85_09840 PF00109 Beta-ketoacyl synthase, N-terminal domain SB85_09850 PF01432 Peptidase family M3 SB85_09855 PF00291 Pyridoxal-phosphate dependent enzyme SB85_09865 PF00403 Heavy-metal-associated domain SB85_09870 PF09278 MerR, DNA binding SB85_09870 PF00376 MerR family regulatory protein SB85_09880 PF07732 Multicopper oxidase SB85_09880 PF07731 Multicopper oxidase SB85_09880 PF00394 Multicopper oxidase SB85_09885 PF05275 Copper resistance protein B precursor (CopB) SB85_09900 PF01380 SIS domain SB85_09905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_09910 PF00005 ABC transporter SB85_09920 PF02687 FtsX-like permease family SB85_09920 PF12704 MacB-like periplasmic core domain SB85_09925 PF12704 MacB-like periplasmic core domain SB85_09925 PF02687 FtsX-like permease family SB85_09930 PF12704 MacB-like periplasmic core domain SB85_09930 PF02687 FtsX-like permease family SB85_09930 PF00005 ABC transporter SB85_09935 PF00005 ABC transporter SB85_09935 PF02687 FtsX-like permease family SB85_09935 PF12704 MacB-like periplasmic core domain SB85_09945 PF12704 MacB-like periplasmic core domain SB85_09945 PF02687 FtsX-like permease family SB85_09950 PF12704 MacB-like periplasmic core domain SB85_09950 PF02687 FtsX-like permease family SB85_09950 PF00005 ABC transporter SB85_09955 PF02687 FtsX-like permease family SB85_09955 PF12704 MacB-like periplasmic core domain SB85_09955 PF00005 ABC transporter SB85_09965 PF12704 MacB-like periplasmic core domain SB85_09965 PF02687 FtsX-like permease family SB85_09970 PF00072 Response regulator receiver domain SB85_09970 PF00158 Sigma-54 interaction domain SB85_09970 PF02954 Bacterial regulatory protein, Fis family SB85_09975 PF00512 His Kinase A (phospho-acceptor) domain SB85_09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_09975 PF00989 PAS fold SB85_09985 PF14602 Hexapeptide repeat of succinyl-transferase SB85_09985 PF00132 Bacterial transferase hexapeptide (six repeats) SB85_09985 PF12804 MobA-like NTP transferase domain SB85_10000 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SB85_10000 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SB85_10005 PF02874 ATP synthase alpha/beta family, beta-barrel domain SB85_10005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SB85_10010 PF00231 ATP synthase SB85_10015 PF00306 ATP synthase alpha/beta chain, C terminal domain SB85_10015 PF02874 ATP synthase alpha/beta family, beta-barrel domain SB85_10015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SB85_10020 PF00213 ATP synthase delta (OSCP) subunit SB85_10025 PF00430 ATP synthase B/B' CF(0) SB85_10030 PF00137 ATP synthase subunit C SB85_10035 PF00119 ATP synthase A chain SB85_10055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SB85_10055 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_10085 PF03180 NLPA lipoprotein SB85_10090 PF00528 Binding-protein-dependent transport system inner membrane component SB85_10095 PF00005 ABC transporter SB85_10095 PF09383 NIL domain SB85_10100 PF00892 EamA-like transporter family SB85_10105 PF04461 Protein of unknown function (DUF520) SB85_10110 PF01494 FAD binding domain SB85_10125 PF00107 Zinc-binding dehydrogenase SB85_10125 PF08240 Alcohol dehydrogenase GroES-like domain SB85_10130 PF00171 Aldehyde dehydrogenase family SB85_10135 PF07859 alpha/beta hydrolase fold SB85_10140 PF00106 short chain dehydrogenase SB85_10145 PF00175 Oxidoreductase NAD-binding domain SB85_10145 PF00111 2Fe-2S iron-sulfur cluster binding domain SB85_10145 PF00970 Oxidoreductase FAD-binding domain SB85_10150 PF00866 Ring hydroxylating beta subunit SB85_10155 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SB85_10155 PF00355 Rieske [2Fe-2S] domain SB85_10160 PF04444 Catechol dioxygenase N terminus SB85_10160 PF00775 Dioxygenase SB85_10165 PF02426 Muconolactone delta-isomerase SB85_10170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SB85_10170 PF13378 Enolase C-terminal domain-like SB85_10175 PF03466 LysR substrate binding domain SB85_10175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_10185 PF01479 S4 domain SB85_10185 PF00849 RNA pseudouridylate synthase SB85_10190 PF08468 Methyltransferase small domain N-terminal SB85_10190 PF05175 Methyltransferase small domain SB85_10200 PF07995 Glucose / Sorbosone dehydrogenase SB85_10210 PF00512 His Kinase A (phospho-acceptor) domain SB85_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_10210 PF00072 Response regulator receiver domain SB85_10210 PF01627 Hpt domain SB85_10210 PF00989 PAS fold SB85_10210 PF00497 Bacterial extracellular solute-binding proteins, family 3 SB85_10225 PF01168 Alanine racemase, N-terminal domain SB85_10225 PF00842 Alanine racemase, C-terminal domain SB85_10230 PF01266 FAD dependent oxidoreductase SB85_10235 PF01037 Lrp/AsnC ligand binding domain SB85_10250 PF01641 SelR domain SB85_10260 PF01618 MotA/TolQ/ExbB proton channel family SB85_10265 PF13677 Membrane MotB of proton-channel complex MotA/MotB SB85_10265 PF00691 OmpA family SB85_10290 PF01061 ABC-2 type transporter SB85_10295 PF00005 ABC transporter SB85_10310 PF00999 Sodium/hydrogen exchanger family SB85_10320 PF05711 Macrocin-O-methyltransferase (TylF) SB85_10325 PF02469 Fasciclin domain SB85_10330 PF03167 Uracil DNA glycosylase superfamily SB85_10340 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SB85_10345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_10345 PF03466 LysR substrate binding domain SB85_10350 PF03358 NADPH-dependent FMN reductase SB85_10355 PF03466 LysR substrate binding domain SB85_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_10360 PF00248 Aldo/keto reductase family SB85_10365 PF02627 Carboxymuconolactone decarboxylase family SB85_10370 PF00248 Aldo/keto reductase family SB85_10385 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SB85_10385 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SB85_10390 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family SB85_10395 PF00753 Metallo-beta-lactamase superfamily SB85_10410 PF00990 Diguanylate cyclase, GGDEF domain SB85_10410 PF17151 Periplasmic sensor domain SB85_10435 PF00593 TonB dependent receptor SB85_10435 PF07715 TonB-dependent Receptor Plug Domain SB85_10445 PF00072 Response regulator receiver domain SB85_10445 PF04397 LytTr DNA-binding domain SB85_10450 PF06580 Histidine kinase SB85_10450 PF07694 5TMR of 5TMR-LYT SB85_10460 PF01220 Dehydroquinase class II SB85_10470 PF13520 Amino acid permease SB85_10490 PF00553 Cellulose binding domain SB85_10490 PF00150 Cellulase (glycosyl hydrolase family 5) SB85_10495 PF00150 Cellulase (glycosyl hydrolase family 5) SB85_10495 PF00553 Cellulose binding domain SB85_10500 PF00675 Insulinase (Peptidase family M16) SB85_10500 PF05193 Peptidase M16 inactive domain SB85_10515 PF01204 Trehalase SB85_10520 PF01464 Transglycosylase SLT domain SB85_10530 PF00497 Bacterial extracellular solute-binding proteins, family 3 SB85_10540 PF06719 AraC-type transcriptional regulator N-terminus SB85_10540 PF12833 Helix-turn-helix domain SB85_10550 PF01544 CorA-like Mg2+ transporter protein SB85_10555 PF00324 Amino acid permease SB85_10565 PF00892 EamA-like transporter family SB85_10590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_10590 PF03466 LysR substrate binding domain SB85_10595 PF02525 Flavodoxin-like fold SB85_10600 PF07759 Protein of unknown function (DUF1615) SB85_10610 PF12823 Domain of unknown function (DUF3817) SB85_10610 PF03176 MMPL family SB85_10615 PF08532 Beta-galactosidase trimerisation domain SB85_10615 PF08533 Beta-galactosidase C-terminal domain SB85_10615 PF02449 Beta-galactosidase SB85_10620 PF17189 Glycosyl hydrolase family 30 beta sandwich domain SB85_10625 PF00561 alpha/beta hydrolase fold SB85_10630 PF07804 HipA-like C-terminal domain SB85_10725 PF00145 C-5 cytosine-specific DNA methylase SB85_10760 PF04264 YceI-like domain SB85_10765 PF00881 Nitroreductase family SB85_10785 PF13333 Integrase core domain SB85_10785 PF00665 Integrase core domain SB85_10785 PF13276 HTH-like domain SB85_10795 PF03009 Glycerophosphoryl diester phosphodiesterase family SB85_10810 PF08335 GlnD PII-uridylyltransferase SB85_10810 PF03710 Glutamate-ammonia ligase adenylyltransferase SB85_10815 PF08946 Osmosensory transporter coiled coil SB85_10815 PF00083 Sugar (and other) transporter SB85_10825 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SB85_10825 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SB85_10830 PF02463 RecF/RecN/SMC N terminal domain SB85_10835 PF01541 GIY-YIG catalytic domain SB85_10840 PF00793 DAHP synthetase I family SB85_10850 PF13333 Integrase core domain SB85_10850 PF13276 HTH-like domain SB85_10850 PF00665 Integrase core domain SB85_10855 PF07715 TonB-dependent Receptor Plug Domain SB85_10855 PF00593 TonB dependent receptor SB85_10860 PF00118 TCP-1/cpn60 chaperonin family SB85_10865 PF00166 Chaperonin 10 Kd subunit SB85_10870 PF04231 Endonuclease I SB85_10875 PF03091 CutA1 divalent ion tolerance protein SB85_10880 PF11412 Disulphide bond corrector protein DsbC SB85_10880 PF02683 Cytochrome C biogenesis protein transmembrane region SB85_10885 PF00578 AhpC/TSA family SB85_10895 PF02838 Glycosyl hydrolase family 20, domain 2 SB85_10895 PF00754 F5/8 type C domain SB85_10895 PF00041 Fibronectin type III domain SB85_10895 PF00963 Cohesin domain SB85_10895 PF07555 beta-N-acetylglucosaminidase SB85_10900 PF01220 Dehydroquinase class II SB85_10905 PF00364 Biotin-requiring enzyme SB85_10915 PF00289 Biotin carboxylase, N-terminal domain SB85_10915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SB85_10915 PF02785 Biotin carboxylase C-terminal domain SB85_10945 PF02954 Bacterial regulatory protein, Fis family SB85_10975 PF00782 Dual specificity phosphatase, catalytic domain SB85_10980 PF12147 Putative methyltransferase SB85_10980 PF12146 Serine aminopeptidase, S33 SB85_10985 PF01066 CDP-alcohol phosphatidyltransferase SB85_10990 PF02142 MGS-like domain SB85_10990 PF01808 AICARFT/IMPCHase bienzyme SB85_11010 PF12805 FUSC-like inner membrane protein yccS SB85_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_11025 PF03466 LysR substrate binding domain SB85_11065 PF00293 NUDIX domain SB85_11065 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SB85_11065 PF09297 NADH pyrophosphatase zinc ribbon domain SB85_11070 PF01521 Iron-sulphur cluster biosynthesis SB85_11090 PF00990 Diguanylate cyclase, GGDEF domain SB85_11090 PF00072 Response regulator receiver domain SB85_11090 PF00563 EAL domain SB85_11095 PF00072 Response regulator receiver domain SB85_11095 PF00672 HAMP domain SB85_11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SB85_11095 PF00512 His Kinase A (phospho-acceptor) domain SB85_11095 PF01627 Hpt domain SB85_11100 PF00210 Ferritin-like domain SB85_11105 PF04324 BFD-like [2Fe-2S] binding domain SB85_11110 PF00293 NUDIX domain SB85_11125 PF00380 Ribosomal protein S9/S16 SB85_11130 PF00572 Ribosomal protein L13 SB85_11135 PF03232 Ubiquinone biosynthesis protein COQ7 SB85_11145 PF00893 Small Multidrug Resistance protein SB85_11150 PF02675 S-adenosylmethionine decarboxylase SB85_11155 PF00325 Bacterial regulatory proteins, crp family SB85_11155 PF00027 Cyclic nucleotide-binding domain SB85_11160 PF01925 Sulfite exporter TauE/SafE SB85_11175 PF00218 Indole-3-glycerol phosphate synthase SB85_11190 PF00117 Glutamine amidotransferase class-I SB85_11200 PF01212 Beta-eliminating lyase SB85_11205 PF04715 Anthranilate synthase component I, N terminal region SB85_11205 PF00425 chorismate binding enzyme SB85_11210 PF00781 Diacylglycerol kinase catalytic domain SB85_11220 PF00834 Ribulose-phosphate 3 epimerase family SB85_11225 PF00226 DnaJ domain SB85_11225 PF01556 DnaJ C terminal domain SB85_11225 PF00684 DnaJ central domain SB85_11230 PF01259 SAICAR synthetase SB85_11265 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SB85_11265 PF13244 Domain of unknown function (DUF4040) SB85_11265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SB85_11265 PF00361 Proton-conducting membrane transporter SB85_11270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SB85_11275 PF00361 Proton-conducting membrane transporter SB85_11280 PF01899 Na+/H+ ion antiporter subunit SB85_11285 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SB85_11290 PF03334 Na+/H+ antiporter subunit SB85_11295 PF01699 Sodium/calcium exchanger protein SB85_11300 PF00199 Catalase SB85_11315 PF00072 Response regulator receiver domain SB85_11315 PF00990 Diguanylate cyclase, GGDEF domain SB85_11320 PF00072 Response regulator receiver domain SB85_11320 PF00196 Bacterial regulatory proteins, luxR family SB85_11325 PF07730 Histidine kinase SB85_11325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11335 PF00005 ABC transporter SB85_11340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_11350 PF00005 ABC transporter SB85_11355 PF12704 MacB-like periplasmic core domain SB85_11355 PF02687 FtsX-like permease family SB85_11370 PF00892 EamA-like transporter family SB85_11375 PF00892 EamA-like transporter family SB85_11390 PF00753 Metallo-beta-lactamase superfamily SB85_11395 PF00579 tRNA synthetases class I (W and Y) SB85_11405 PF05532 CsbD-like SB85_11420 PF00491 Arginase family SB85_11440 PF03309 Type III pantothenate kinase SB85_11445 PF08279 HTH domain SB85_11445 PF02237 Biotin protein ligase C terminal domain SB85_11445 PF03099 Biotin/lipoate A/B protein ligase family SB85_11455 PF06167 Glucose-regulated metallo-peptidase M90 SB85_11470 PF00672 HAMP domain SB85_11470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11470 PF00512 His Kinase A (phospho-acceptor) domain SB85_11475 PF00072 Response regulator receiver domain SB85_11475 PF00486 Transcriptional regulatory protein, C terminal SB85_11485 PF01207 Dihydrouridine synthase (Dus) SB85_11495 PF08267 Cobalamin-independent synthase, N-terminal domain SB85_11495 PF01717 Cobalamin-independent synthase, Catalytic domain SB85_11505 PF02321 Outer membrane efflux protein SB85_11510 PF00873 AcrB/AcrD/AcrF family SB85_11520 PF00672 HAMP domain SB85_11520 PF00512 His Kinase A (phospho-acceptor) domain SB85_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11525 PF00072 Response regulator receiver domain SB85_11525 PF00486 Transcriptional regulatory protein, C terminal SB85_11530 PF00551 Formyl transferase SB85_11540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SB85_11540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SB85_11545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SB85_11560 PF02146 Sir2 family SB85_11570 PF04151 Bacterial pre-peptidase C-terminal domain SB85_11570 PF00082 Subtilase family SB85_11575 PF00486 Transcriptional regulatory protein, C terminal SB85_11575 PF00072 Response regulator receiver domain SB85_11580 PF00512 His Kinase A (phospho-acceptor) domain SB85_11580 PF08448 PAS fold SB85_11580 PF13188 PAS domain SB85_11580 PF00072 Response regulator receiver domain SB85_11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11590 PF00082 Subtilase family SB85_11590 PF04151 Bacterial pre-peptidase C-terminal domain SB85_11595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SB85_11600 PF07690 Major Facilitator Superfamily SB85_11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_11605 PF03466 LysR substrate binding domain SB85_11615 PF00085 Thioredoxin SB85_11625 PF00268 Ribonucleotide reductase, small chain SB85_11630 PF02867 Ribonucleotide reductase, barrel domain SB85_11630 PF03477 ATP cone domain SB85_11630 PF00317 Ribonucleotide reductase, all-alpha domain SB85_11640 PF00072 Response regulator receiver domain SB85_11640 PF00486 Transcriptional regulatory protein, C terminal SB85_11660 PF02146 Sir2 family SB85_11665 PF02566 OsmC-like protein SB85_11670 PF01047 MarR family SB85_11680 PF03969 AFG1-like ATPase SB85_11695 PF02492 CobW/HypB/UreG, nucleotide-binding domain SB85_11695 PF07683 Cobalamin synthesis protein cobW C-terminal domain SB85_11725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_11725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_11725 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_11730 PF01039 Carboxyl transferase domain SB85_11735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SB85_11735 PF00289 Biotin carboxylase, N-terminal domain SB85_11735 PF00364 Biotin-requiring enzyme SB85_11735 PF02785 Biotin carboxylase C-terminal domain SB85_11770 PF00583 Acetyltransferase (GNAT) family SB85_11770 PF13380 CoA binding domain SB85_11770 PF13607 Succinyl-CoA ligase like flavodoxin domain SB85_11775 PF02254 TrkA-N domain SB85_11775 PF00999 Sodium/hydrogen exchanger family SB85_11780 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SB85_11780 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SB85_11785 PF00723 Glycosyl hydrolases family 15 SB85_11790 PF00072 Response regulator receiver domain SB85_11790 PF00486 Transcriptional regulatory protein, C terminal SB85_11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_11795 PF00512 His Kinase A (phospho-acceptor) domain SB85_11805 PF00082 Subtilase family SB85_11805 PF04151 Bacterial pre-peptidase C-terminal domain SB85_11815 PF05166 YcgL domain SB85_11820 PF00109 Beta-ketoacyl synthase, N-terminal domain SB85_11820 PF02801 Beta-ketoacyl synthase, C-terminal domain SB85_11830 PF00535 Glycosyl transferase family 2 SB85_11840 PF07519 Tannase and feruloyl esterase SB85_11870 PF07977 FabA-like domain SB85_11885 PF00550 Phosphopantetheine attachment site SB85_11890 PF04820 Tryptophan halogenase SB85_11900 PF02245 Methylpurine-DNA glycosylase (MPG) SB85_11905 PF10459 Peptidase S46 SB85_11910 PF04357 TamB, inner membrane protein subunit of TAM complex SB85_11915 PF17243 POTRA domain TamA domain 1 SB85_11915 PF07244 Surface antigen variable number repeat SB85_11915 PF01103 Surface antigen SB85_11930 PF04337 Protein of unknown function, DUF480 SB85_11940 PF08479 POTRA domain, ShlB-type SB85_11940 PF17287 POTRA domain SB85_11940 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SB85_11950 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SB85_11955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SB85_11960 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_11960 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_11960 PF01610 Transposase SB85_11975 PF00356 Bacterial regulatory proteins, lacI family SB85_11990 PF01553 Acyltransferase SB85_12055 PF04244 Deoxyribodipyrimidine photo-lyase-related protein SB85_12075 PF01171 PP-loop family SB85_12080 PF04381 Putative exonuclease, RdgC SB85_12090 PF02203 Tar ligand binding domain homologue SB85_12090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_12090 PF00672 HAMP domain SB85_12095 PF12146 Serine aminopeptidase, S33 SB85_12100 PF00762 Ferrochelatase SB85_12110 PF02416 mttA/Hcf106 family SB85_12115 PF02416 mttA/Hcf106 family SB85_12120 PF00902 Sec-independent protein translocase protein (TatC) SB85_12130 PF00958 GMP synthase C terminal domain SB85_12130 PF00117 Glutamine amidotransferase class-I SB85_12130 PF02540 NAD synthase SB85_12135 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SB85_12135 PF00437 Type II/IV secretion system protein SB85_12140 PF02091 Glycyl-tRNA synthetase alpha subunit SB85_12145 PF05746 DALR anticodon binding domain SB85_12145 PF02092 Glycyl-tRNA synthetase beta subunit SB85_12150 PF13181 Tetratricopeptide repeat SB85_12155 PF00593 TonB dependent receptor SB85_12155 PF07715 TonB-dependent Receptor Plug Domain SB85_12160 PF00580 UvrD/REP helicase N-terminal domain SB85_12160 PF13361 UvrD-like helicase C-terminal domain SB85_12170 PF00265 Thymidine kinase SB85_12175 PF04070 Domain of unknown function (DUF378) SB85_12190 PF02322 Cytochrome bd terminal oxidase subunit II SB85_12195 PF01654 Cytochrome bd terminal oxidase subunit I SB85_12215 PF01218 Coproporphyrinogen III oxidase SB85_12225 PF00476 DNA polymerase family A SB85_12225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SB85_12225 PF01367 5'-3' exonuclease, C-terminal SAM fold SB85_12225 PF01612 3'-5' exonuclease SB85_12235 PF00582 Universal stress protein family SB85_12240 PF14602 Hexapeptide repeat of succinyl-transferase SB85_12240 PF12464 Maltose acetyltransferase SB85_12255 PF03372 Endonuclease/Exonuclease/phosphatase family SB85_12260 PF13091 PLD-like domain SB85_12265 PF03706 Lysylphosphatidylglycerol synthase TM region SB85_12280 PF13361 UvrD-like helicase C-terminal domain SB85_12280 PF00580 UvrD/REP helicase N-terminal domain SB85_12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_12285 PF03466 LysR substrate binding domain SB85_12290 PF07690 Major Facilitator Superfamily SB85_12300 PF13396 Phospholipase_D-nuclease N-terminal SB85_12300 PF13091 PLD-like domain SB85_12305 PF00471 Ribosomal protein L33 SB85_12310 PF00830 Ribosomal L28 family SB85_12320 PF02321 Outer membrane efflux protein SB85_12325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_12325 PF00529 HlyD membrane-fusion protein of T1SS SB85_12330 PF00873 AcrB/AcrD/AcrF family SB85_12350 PF00535 Glycosyl transferase family 2 SB85_12355 PF01370 NAD dependent epimerase/dehydratase family SB85_12370 PF02195 ParB-like nuclease domain SB85_12370 PF17762 HTH domain found in ParB protein SB85_12375 PF13614 AAA domain SB85_12380 PF02527 rRNA small subunit methyltransferase G SB85_12385 PF01648 4'-phosphopantetheinyl transferase superfamily SB85_12390 PF04226 Transglycosylase associated protein SB85_12410 PF09312 SurA N-terminal domain SB85_12410 PF00639 PPIC-type PPIASE domain SB85_12420 PF00171 Aldehyde dehydrogenase family SB85_12425 PF13419 Haloacid dehalogenase-like hydrolase SB85_12430 PF00474 Sodium:solute symporter family SB85_12445 PF13193 AMP-binding enzyme C-terminal domain SB85_12445 PF00501 AMP-binding enzyme SB85_12445 PF16177 Acetyl-coenzyme A synthetase N-terminus SB85_12450 PF00196 Bacterial regulatory proteins, luxR family SB85_12450 PF00072 Response regulator receiver domain SB85_12455 PF02677 Epoxyqueuosine reductase QueH SB85_12460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SB85_12460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SB85_12465 PF00378 Enoyl-CoA hydratase/isomerase SB85_12470 PF00378 Enoyl-CoA hydratase/isomerase SB85_12475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SB85_12475 PF02770 Acyl-CoA dehydrogenase, middle domain SB85_12475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SB85_12480 PF00171 Aldehyde dehydrogenase family SB85_12485 PF02659 Putative manganese efflux pump SB85_12495 PF07715 TonB-dependent Receptor Plug Domain SB85_12495 PF00593 TonB dependent receptor SB85_12500 PF13181 Tetratricopeptide repeat SB85_12505 PF01627 Hpt domain SB85_12505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_12505 PF00072 Response regulator receiver domain SB85_12505 PF00672 HAMP domain SB85_12505 PF00512 His Kinase A (phospho-acceptor) domain SB85_12510 PF17862 AAA+ lid domain SB85_12510 PF01434 Peptidase family M41 SB85_12510 PF00004 ATPase family associated with various cellular activities (AAA) SB85_12515 PF04349 Periplasmic glucan biosynthesis protein, MdoG SB85_12520 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SB85_12520 PF06827 Zinc finger found in FPG and IleRS SB85_12520 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SB85_12535 PF00005 ABC transporter SB85_12540 PF01638 HxlR-like helix-turn-helix SB85_12560 PF00570 HRDC domain SB85_12560 PF13361 UvrD-like helicase C-terminal domain SB85_12565 PF09369 Domain of unknown function (DUF1998) SB85_12565 PF00271 Helicase conserved C-terminal domain SB85_12565 PF00270 DEAD/DEAH box helicase SB85_12575 PF07693 KAP family P-loop domain SB85_12595 PF01926 50S ribosome-binding GTPase SB85_12595 PF10396 GTP-binding protein TrmE N-terminus SB85_12595 PF12631 MnmE helical domain SB85_12600 PF00457 Glycosyl hydrolases family 11 SB85_12600 PF03422 Carbohydrate binding module (family 6) SB85_12600 PF01522 Polysaccharide deacetylase SB85_12605 PF02096 60Kd inner membrane protein SB85_12605 PF14849 YidC periplasmic domain SB85_12610 PF00825 Ribonuclease P SB85_12615 PF00468 Ribosomal protein L34 SB85_12620 PF08299 Bacterial dnaA protein helix-turn-helix SB85_12620 PF00308 Bacterial dnaA protein SB85_12620 PF11638 DnaA N-terminal domain SB85_12625 PF02768 DNA polymerase III beta subunit, C-terminal domain SB85_12625 PF02767 DNA polymerase III beta subunit, central domain SB85_12625 PF00712 DNA polymerase III beta subunit, N-terminal domain SB85_12630 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_12630 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_12630 PF01610 Transposase SB85_12635 PF02463 RecF/RecN/SMC N terminal domain SB85_12640 PF00986 DNA gyrase B subunit, carboxyl terminus SB85_12640 PF01751 Toprim domain SB85_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_12640 PF18053 DNA gyrase B subunit insert domain SB85_12640 PF00204 DNA gyrase B SB85_12645 PF02517 CPBP intramembrane metalloprotease SB85_12650 PF01435 Peptidase family M48 SB85_12660 PF03544 Gram-negative bacterial TonB protein C-terminal SB85_12665 PF01618 MotA/TolQ/ExbB proton channel family SB85_12670 PF02472 Biopolymer transport protein ExbD/TolR SB85_12675 PF02472 Biopolymer transport protein ExbD/TolR SB85_12680 PF02472 Biopolymer transport protein ExbD/TolR SB85_12685 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SB85_12695 PF13396 Phospholipase_D-nuclease N-terminal SB85_12695 PF13091 PLD-like domain SB85_12700 PF04055 Radical SAM superfamily SB85_12715 PF03358 NADPH-dependent FMN reductase SB85_12730 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SB85_12735 PF00155 Aminotransferase class I and II SB85_12740 PF07715 TonB-dependent Receptor Plug Domain SB85_12740 PF00593 TonB dependent receptor SB85_12745 PF01590 GAF domain SB85_12745 PF00158 Sigma-54 interaction domain SB85_12745 PF02954 Bacterial regulatory protein, Fis family SB85_12750 PF00171 Aldehyde dehydrogenase family SB85_12765 PF00107 Zinc-binding dehydrogenase SB85_12765 PF08240 Alcohol dehydrogenase GroES-like domain SB85_12785 PF02735 Ku70/Ku80 beta-barrel domain SB85_12790 PF01070 FMN-dependent dehydrogenase SB85_12795 PF07729 FCD domain SB85_12795 PF00392 Bacterial regulatory proteins, gntR family SB85_12810 PF07730 Histidine kinase SB85_12815 PF00196 Bacterial regulatory proteins, luxR family SB85_12815 PF00072 Response regulator receiver domain SB85_12820 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SB85_12820 PF12241 Trans-2-enoyl-CoA reductase catalytic region SB85_12820 PF07055 Enoyl reductase FAD binding domain SB85_12885 PF01527 Transposase SB85_12890 PF13683 Integrase core domain SB85_12890 PF13276 HTH-like domain SB85_12960 PF07715 TonB-dependent Receptor Plug Domain SB85_12960 PF00593 TonB dependent receptor SB85_12965 PF07715 TonB-dependent Receptor Plug Domain SB85_12990 PF00135 Carboxylesterase family SB85_12995 PF13472 GDSL-like Lipase/Acylhydrolase family SB85_12995 PF07859 alpha/beta hydrolase fold SB85_13005 PF03480 Bacterial extracellular solute-binding protein, family 7 SB85_13015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SB85_13020 PF00356 Bacterial regulatory proteins, lacI family SB85_13030 PF04962 KduI/IolB family SB85_13045 PF03783 Curli production assembly/transport component CsgG SB85_13065 PF01037 Lrp/AsnC ligand binding domain SB85_13070 PF00593 TonB dependent receptor SB85_13070 PF07715 TonB-dependent Receptor Plug Domain SB85_13070 PF07660 Secretin and TonB N terminus short domain SB85_13085 PF01734 Patatin-like phospholipase SB85_13105 PF02203 Tar ligand binding domain homologue SB85_13105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_13105 PF00672 HAMP domain SB85_13110 PF01569 PAP2 superfamily SB85_13120 PF03741 Integral membrane protein TerC family SB85_13125 PF17785 PUA-like domain SB85_13125 PF10672 S-adenosylmethionine-dependent methyltransferase SB85_13155 PF13520 Amino acid permease SB85_13160 PF00072 Response regulator receiver domain SB85_13160 PF00196 Bacterial regulatory proteins, luxR family SB85_13165 PF13493 Domain of unknown function (DUF4118) SB85_13165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_13165 PF00512 His Kinase A (phospho-acceptor) domain SB85_13165 PF00989 PAS fold SB85_13165 PF08447 PAS fold SB85_13165 PF13426 PAS domain SB85_13170 PF02308 MgtC family SB85_13180 PF02646 RmuC family SB85_13185 PF00255 Glutathione peroxidase SB85_13190 PF04333 MlaA lipoprotein SB85_13205 PF02470 MlaD protein SB85_13210 PF02405 Permease MlaE SB85_13215 PF00005 ABC transporter SB85_13250 PF17946 RecC C-terminal domain SB85_13255 PF13361 UvrD-like helicase C-terminal domain SB85_13255 PF12705 PD-(D/E)XK nuclease superfamily SB85_13255 PF00580 UvrD/REP helicase N-terminal domain SB85_13260 PF13538 UvrD-like helicase C-terminal domain SB85_13275 PF01381 Helix-turn-helix SB85_13305 PF02203 Tar ligand binding domain homologue SB85_13305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_13305 PF00672 HAMP domain SB85_13315 PF00083 Sugar (and other) transporter SB85_13320 PF01227 GTP cyclohydrolase I SB85_13345 PF02810 SEC-C motif SB85_13350 PF13406 Transglycosylase SLT domain SB85_13355 PF07690 Major Facilitator Superfamily SB85_13360 PF01126 Heme oxygenase SB85_13365 PF01590 GAF domain SB85_13365 PF00360 Phytochrome region SB85_13365 PF13426 PAS domain SB85_13365 PF08446 PAS fold SB85_13370 PF03594 Benzoate membrane transport protein SB85_13410 PF02142 MGS-like domain SB85_13415 PF00150 Cellulase (glycosyl hydrolase family 5) SB85_13420 PF00150 Cellulase (glycosyl hydrolase family 5) SB85_13425 PF00150 Cellulase (glycosyl hydrolase family 5) SB85_13435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SB85_13435 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_13440 PF00310 Glutamine amidotransferases class-II SB85_13440 PF01493 GXGXG motif SB85_13440 PF04898 Glutamate synthase central domain SB85_13440 PF01645 Conserved region in glutamate synthase SB85_13470 PF04679 ATP dependent DNA ligase C terminal region SB85_13470 PF13298 DNA polymerase Ligase (LigD) SB85_13470 PF01068 ATP dependent DNA ligase domain SB85_13495 PF00271 Helicase conserved C-terminal domain SB85_13495 PF00270 DEAD/DEAH box helicase SB85_13495 PF09369 Domain of unknown function (DUF1998) SB85_13550 PF00083 Sugar (and other) transporter SB85_13600 PF00004 ATPase family associated with various cellular activities (AAA) SB85_13600 PF01434 Peptidase family M41 SB85_13600 PF17862 AAA+ lid domain SB85_13605 PF13614 AAA domain SB85_13620 PF13091 PLD-like domain SB85_13625 PF03061 Thioesterase superfamily SB85_13650 PF02673 Bacitracin resistance protein BacA SB85_13655 PF00120 Glutamine synthetase, catalytic domain SB85_13655 PF03951 Glutamine synthetase, beta-Grasp domain SB85_13665 PF00543 Nitrogen regulatory protein P-II SB85_13670 PF00909 Ammonium Transporter Family SB85_13675 PF00989 PAS fold SB85_13675 PF00512 His Kinase A (phospho-acceptor) domain SB85_13675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_13680 PF00158 Sigma-54 interaction domain SB85_13680 PF02954 Bacterial regulatory protein, Fis family SB85_13680 PF00072 Response regulator receiver domain SB85_13685 PF00080 Copper/zinc superoxide dismutase (SODC) SB85_13690 PF00080 Copper/zinc superoxide dismutase (SODC) SB85_13705 PF02803 Thiolase, C-terminal domain SB85_13705 PF00108 Thiolase, N-terminal domain SB85_13730 PF00583 Acetyltransferase (GNAT) family SB85_13730 PF09500 Putative thioesterase (yiiD_Cterm) SB85_13745 PF02556 Preprotein translocase subunit SecB SB85_13750 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SB85_13750 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SB85_13760 PF00440 Bacterial regulatory proteins, tetR family SB85_13770 PF00588 SpoU rRNA Methylase family SB85_13780 PF05193 Peptidase M16 inactive domain SB85_13780 PF00675 Insulinase (Peptidase family M16) SB85_13790 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SB85_13790 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SB85_13795 PF13784 Fic/DOC family N-terminal SB85_13795 PF02661 Fic/DOC family SB85_13805 PF00561 alpha/beta hydrolase fold SB85_13815 PF03692 Putative zinc- or iron-chelating domain SB85_13820 PF00501 AMP-binding enzyme SB85_13825 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family SB85_13840 PF03109 ABC1 family SB85_13845 PF01596 O-methyltransferase SB85_13850 PF00849 RNA pseudouridylate synthase SB85_13860 PF00472 RF-1 domain SB85_13870 PF00593 TonB dependent receptor SB85_13870 PF07715 TonB-dependent Receptor Plug Domain SB85_13880 PF04542 Sigma-70 region 2 SB85_13880 PF08281 Sigma-70, region 4 SB85_13885 PF01112 Asparaginase SB85_13905 PF10502 Signal peptidase, peptidase S26 SB85_13930 PF01274 Malate synthase SB85_13935 PF00463 Isocitrate lyase family SB85_13940 PF08448 PAS fold SB85_13940 PF00990 Diguanylate cyclase, GGDEF domain SB85_14000 PF01740 STAS domain SB85_14000 PF00916 Sulfate permease family SB85_14030 PF00378 Enoyl-CoA hydratase/isomerase SB85_14035 PF00501 AMP-binding enzyme SB85_14045 PF07690 Major Facilitator Superfamily SB85_14065 PF00171 Aldehyde dehydrogenase family SB85_14075 PF01494 FAD binding domain SB85_14095 PF00355 Rieske [2Fe-2S] domain SB85_14100 PF01144 Coenzyme A transferase SB85_14105 PF01144 Coenzyme A transferase SB85_14110 PF00108 Thiolase, N-terminal domain SB85_14110 PF02803 Thiolase, C-terminal domain SB85_14115 PF00775 Dioxygenase SB85_14115 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal SB85_14120 PF00775 Dioxygenase SB85_14120 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal SB85_14125 PF10397 Adenylosuccinate lyase C-terminus SB85_14125 PF00206 Lyase SB85_14130 PF12146 Serine aminopeptidase, S33 SB85_14135 PF02627 Carboxymuconolactone decarboxylase family SB85_14140 PF01638 HxlR-like helix-turn-helix SB85_14170 PF00849 RNA pseudouridylate synthase SB85_14180 PF00270 DEAD/DEAH box helicase SB85_14180 PF04408 Helicase associated domain (HA2) SB85_14180 PF00271 Helicase conserved C-terminal domain SB85_14180 PF08482 ATP-dependent helicase C-terminal SB85_14185 PF01026 TatD related DNase SB85_14200 PF05736 OprF membrane domain SB85_14200 PF00691 OmpA family SB85_14225 PF00437 Type II/IV secretion system protein SB85_14275 PF01061 ABC-2 type transporter SB85_14280 PF00005 ABC transporter SB85_14285 PF00970 Oxidoreductase FAD-binding domain SB85_14285 PF00111 2Fe-2S iron-sulfur cluster binding domain SB85_14285 PF00175 Oxidoreductase NAD-binding domain SB85_14295 PF01381 Helix-turn-helix SB85_14300 PF00561 alpha/beta hydrolase fold SB85_14305 PF00005 ABC transporter SB85_14325 PF03350 Uncharacterized protein family, UPF0114 SB85_14330 PF02798 Glutathione S-transferase, N-terminal domain SB85_14330 PF00043 Glutathione S-transferase, C-terminal domain SB85_14335 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SB85_14335 PF00326 Prolyl oligopeptidase family SB85_14365 PF00490 Delta-aminolevulinic acid dehydratase SB85_14375 PF03466 LysR substrate binding domain SB85_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_14385 PF00175 Oxidoreductase NAD-binding domain SB85_14385 PF00258 Flavodoxin SB85_14385 PF00667 FAD binding domain SB85_14390 PF04052 TolB amino-terminal domain SB85_14390 PF07676 WD40-like Beta Propeller Repeat SB85_14395 PF08501 Shikimate dehydrogenase substrate binding domain SB85_14395 PF01488 Shikimate / quinate 5-dehydrogenase SB85_14395 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SB85_14415 PF13307 Helicase C-terminal domain SB85_14415 PF06733 DEAD_2 SB85_14425 PF00199 Catalase SB85_14425 PF06628 Catalase-related immune-responsive SB85_14495 PF00291 Pyridoxal-phosphate dependent enzyme SB85_14520 PF07690 Major Facilitator Superfamily SB85_14525 PF05506 Domain of unknown function (DUF756) SB85_14525 PF04185 Phosphoesterase family SB85_14535 PF01594 AI-2E family transporter SB85_14585 PF05598 Transposase domain (DUF772) SB85_14585 PF01609 Transposase DDE domain SB85_14595 PF00920 Dehydratase family SB85_14610 PF03738 Glutathionylspermidine synthase preATP-grasp SB85_14630 PF07726 ATPase family associated with various cellular activities (AAA) SB85_14630 PF17863 AAA lid domain SB85_14660 PF00132 Bacterial transferase hexapeptide (six repeats) SB85_14665 PF05048 Periplasmic copper-binding protein (NosD) SB85_14670 PF04966 Carbohydrate-selective porin, OprB family SB85_14675 PF01487 Type I 3-dehydroquinase SB85_14680 PF07690 Major Facilitator Superfamily SB85_14685 PF01011 PQQ enzyme repeat SB85_14690 PF00529 HlyD membrane-fusion protein of T1SS SB85_14690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_14695 PF00873 AcrB/AcrD/AcrF family SB85_14700 PF02321 Outer membrane efflux protein SB85_14705 PF00400 WD domain, G-beta repeat SB85_14705 PF00069 Protein kinase domain SB85_14710 PF07859 alpha/beta hydrolase fold SB85_14715 PF13932 GidA associated domain SB85_14715 PF01134 Glucose inhibited division protein A SB85_14725 PF00291 Pyridoxal-phosphate dependent enzyme SB85_14735 PF01510 N-acetylmuramoyl-L-alanine amidase SB85_14745 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SB85_14750 PF13649 Methyltransferase domain SB85_14760 PF12697 Alpha/beta hydrolase family SB85_14770 PF00155 Aminotransferase class I and II SB85_14775 PF04055 Radical SAM superfamily SB85_14775 PF06968 Biotin and Thiamin Synthesis associated domain SB85_14785 PF07549 SecD/SecF GG Motif SB85_14785 PF02355 Protein export membrane protein SB85_14790 PF01040 UbiA prenyltransferase family SB85_14800 PF11808 Phosphate regulon sensor protein PhoR SB85_14800 PF00989 PAS fold SB85_14800 PF00512 His Kinase A (phospho-acceptor) domain SB85_14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_14805 PF00072 Response regulator receiver domain SB85_14805 PF00486 Transcriptional regulatory protein, C terminal SB85_14810 PF08479 POTRA domain, ShlB-type SB85_14810 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SB85_14815 PF05860 haemagglutination activity domain SB85_14825 PF01078 Magnesium chelatase, subunit ChlI SB85_14825 PF13335 Magnesium chelatase, subunit ChlI C-terminal SB85_14830 PF04380 Membrane fusogenic activity SB85_14835 PF00543 Nitrogen regulatory protein P-II SB85_14850 PF17284 Spermidine synthase tetramerisation domain SB85_14855 PF17810 Arginine decarboxylase helical bundle domain SB85_14855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SB85_14855 PF17944 Arginine decarboxylase C-terminal helical extension SB85_14865 PF06580 Histidine kinase SB85_14865 PF07694 5TMR of 5TMR-LYT SB85_14870 PF00072 Response regulator receiver domain SB85_14870 PF04397 LytTr DNA-binding domain SB85_14890 PF03466 LysR substrate binding domain SB85_14890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_14920 PF00106 short chain dehydrogenase SB85_14930 PF00750 tRNA synthetases class I (R) SB85_14930 PF05746 DALR anticodon binding domain SB85_14930 PF03485 Arginyl tRNA synthetase N terminal domain SB85_14935 PF04002 RadC-like JAB domain SB85_14940 PF04127 DNA / pantothenate metabolism flavoprotein SB85_14940 PF02441 Flavoprotein SB85_14945 PF00692 dUTPase SB85_14950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SB85_14950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SB85_14950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SB85_14950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SB85_14960 PF00156 Phosphoribosyl transferase domain SB85_14965 PF03372 Endonuclease/Exonuclease/phosphatase family SB85_14970 PF07690 Major Facilitator Superfamily SB85_14980 PF03702 Anhydro-N-acetylmuramic acid kinase SB85_14985 PF01551 Peptidase family M23 SB85_14985 PF04225 Opacity-associated protein A LysM-like domain SB85_14990 PF00579 tRNA synthetases class I (W and Y) SB85_15020 PF08240 Alcohol dehydrogenase GroES-like domain SB85_15020 PF00107 Zinc-binding dehydrogenase SB85_15025 PF04389 Peptidase family M28 SB85_15035 PF01551 Peptidase family M23 SB85_15040 PF03572 Peptidase family S41 SB85_15040 PF13180 PDZ domain SB85_15045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SB85_15045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SB85_15060 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SB85_15065 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_15065 PF01610 Transposase SB85_15065 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_15070 PF01619 Proline dehydrogenase SB85_15070 PF14850 DNA-binding domain of Proline dehydrogenase SB85_15070 PF00171 Aldehyde dehydrogenase family SB85_15070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SB85_15085 PF00115 Cytochrome C and Quinol oxidase polypeptide I SB85_15090 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 SB85_15095 PF00510 Cytochrome c oxidase subunit III SB85_15120 PF01040 UbiA prenyltransferase family SB85_15125 PF02203 Tar ligand binding domain homologue SB85_15125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_15125 PF00672 HAMP domain SB85_15135 PF13593 SBF-like CPA transporter family (DUF4137) SB85_15145 PF10410 DnaB-helicase binding domain of primase SB85_15145 PF08275 DNA primase catalytic core, N-terminal domain SB85_15145 PF08278 DNA primase DnaG DnaB-binding SB85_15145 PF01807 CHC2 zinc finger SB85_15150 PF03631 Virulence factor BrkB SB85_15160 PF01165 Ribosomal protein S21 SB85_15165 PF00814 Glycoprotease family SB85_15170 PF02152 Dihydroneopterin aldolase SB85_15175 PF00924 Mechanosensitive ion channel SB85_15180 PF14403 Circularly permuted ATP-grasp type 2 SB85_15190 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_15190 PF14310 Fibronectin type III-like domain SB85_15190 PF01915 Glycosyl hydrolase family 3 C-terminal domain SB85_15195 PF05360 yiaA/B two helix domain SB85_15200 PF07995 Glucose / Sorbosone dehydrogenase SB85_15220 PF13520 Amino acid permease SB85_15230 PF00356 Bacterial regulatory proteins, lacI family SB85_15255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SB85_15255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SB85_15265 PF01915 Glycosyl hydrolase family 3 C-terminal domain SB85_15265 PF00933 Glycosyl hydrolase family 3 N terminal domain SB85_15265 PF14310 Fibronectin type III-like domain SB85_15270 PF00356 Bacterial regulatory proteins, lacI family SB85_15275 PF07488 Glycosyl hydrolase family 67 middle domain SB85_15275 PF07477 Glycosyl hydrolase family 67 C-terminus SB85_15275 PF03648 Glycosyl hydrolase family 67 N-terminus SB85_15285 PF04616 Glycosyl hydrolases family 43 SB85_15285 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SB85_15295 PF04616 Glycosyl hydrolases family 43 SB85_15300 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SB85_15300 PF13378 Enolase C-terminal domain-like SB85_15315 PF07715 TonB-dependent Receptor Plug Domain SB85_15315 PF00593 TonB dependent receptor SB85_15320 PF01510 N-acetylmuramoyl-L-alanine amidase SB85_15345 PF01471 Putative peptidoglycan binding domain SB85_15350 PF01427 D-ala-D-ala dipeptidase SB85_15380 PF07063 Domain of unknown function (DUF1338) SB85_15385 PF00883 Cytosol aminopeptidase family, catalytic domain SB85_15385 PF02789 Cytosol aminopeptidase family, N-terminal domain SB85_15390 PF13419 Haloacid dehalogenase-like hydrolase SB85_15395 PF01594 AI-2E family transporter SB85_15415 PF00595 PDZ domain SB85_15415 PF13180 PDZ domain SB85_15420 PF14528 LAGLIDADG-like domain SB85_15420 PF03796 DnaB-like helicase C terminal domain SB85_15420 PF00772 DnaB-like helicase N terminal domain SB85_15445 PF00990 Diguanylate cyclase, GGDEF domain SB85_15445 PF03707 Bacterial signalling protein N terminal repeat SB85_15445 PF00563 EAL domain SB85_15450 PF00106 short chain dehydrogenase SB85_15480 PF03372 Endonuclease/Exonuclease/phosphatase family SB85_15485 PF01966 HD domain SB85_15485 PF00013 KH domain SB85_15485 PF12072 Domain of unknown function (DUF3552) SB85_15490 PF07308 Protein of unknown function (DUF1456) SB85_15500 PF01266 FAD dependent oxidoreductase SB85_15500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SB85_15505 PF00230 Major intrinsic protein SB85_15510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SB85_15510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SB85_15520 PF13419 Haloacid dehalogenase-like hydrolase SB85_15530 PF00248 Aldo/keto reductase family SB85_15545 PF01557 Fumarylacetoacetate (FAA) hydrolase family SB85_15550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SB85_15550 PF13378 Enolase C-terminal domain-like SB85_15555 PF05336 L-rhamnose mutarotase SB85_15560 PF07690 Major Facilitator Superfamily SB85_15565 PF09339 IclR helix-turn-helix domain SB85_15565 PF01614 Bacterial transcriptional regulator SB85_15625 PF00107 Zinc-binding dehydrogenase SB85_15625 PF08240 Alcohol dehydrogenase GroES-like domain SB85_15630 PF00924 Mechanosensitive ion channel SB85_15630 PF12794 Mechanosensitive ion channel inner membrane domain 1 SB85_15630 PF12795 Mechanosensitive ion channel porin domain SB85_15635 PF03109 ABC1 family SB85_15645 PF02734 DAK2 domain SB85_15645 PF02733 Dak1 domain SB85_15650 PF05661 Protein of unknown function (DUF808) SB85_15655 PF05661 Protein of unknown function (DUF808) SB85_15660 PF00990 Diguanylate cyclase, GGDEF domain SB85_15670 PF02308 MgtC family SB85_15675 PF00294 pfkB family carbohydrate kinase SB85_15695 PF00270 DEAD/DEAH box helicase SB85_15695 PF00271 Helicase conserved C-terminal domain SB85_15700 PF03413 Peptidase propeptide and YPEB domain SB85_15700 PF01447 Thermolysin metallopeptidase, catalytic domain SB85_15700 PF02868 Thermolysin metallopeptidase, alpha-helical domain SB85_15700 PF07504 Fungalysin/Thermolysin Propeptide Motif SB85_15700 PF04151 Bacterial pre-peptidase C-terminal domain SB85_15705 PF02817 e3 binding domain SB85_15705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SB85_15705 PF00364 Biotin-requiring enzyme SB85_15715 PF02779 Transketolase, pyrimidine binding domain SB85_15715 PF02780 Transketolase, C-terminal domain SB85_15720 PF00676 Dehydrogenase E1 component SB85_15730 PF03301 Tryptophan 2,3-dioxygenase SB85_15735 PF00854 POT family SB85_15750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SB85_15755 PF04480 Protein of unknown function (DUF559) SB85_15760 PF04209 homogentisate 1,2-dioxygenase SB85_15775 PF00873 AcrB/AcrD/AcrF family SB85_15780 PF00873 AcrB/AcrD/AcrF family SB85_15785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_15795 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SB85_15795 PF14489 QueF-like protein SB85_15800 PF04972 BON domain SB85_15800 PF01476 LysM domain SB85_15810 PF01979 Amidohydrolase family SB85_15815 PF00455 DeoR C terminal sensor domain SB85_15815 PF08220 DeoR-like helix-turn-helix domain SB85_15820 PF08013 Tagatose 6 phosphate kinase SB85_15825 PF00480 ROK family SB85_15830 PF01380 SIS domain SB85_15835 PF01055 Glycosyl hydrolases family 31 SB85_15835 PF16338 Domain of unknown function (DUF4968) SB85_15835 PF13802 Galactose mutarotase-like SB85_15835 PF17137 Domain of unknown function (DUF5110) SB85_15840 PF00593 TonB dependent receptor SB85_15840 PF07715 TonB-dependent Receptor Plug Domain SB85_15845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SB85_15855 PF03971 Monomeric isocitrate dehydrogenase SB85_15860 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SB85_15875 PF07498 Rho termination factor, N-terminal domain SB85_15875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SB85_15875 PF07497 Rho termination factor, RNA-binding domain SB85_15880 PF00085 Thioredoxin SB85_15890 PF00005 ABC transporter SB85_15895 PF18075 FtsX extracellular domain SB85_15900 PF00072 Response regulator receiver domain SB85_15900 PF01339 CheB methylesterase SB85_15905 PF03167 Uracil DNA glycosylase superfamily SB85_15910 PF04542 Sigma-70 region 2 SB85_15910 PF04545 Sigma-70, region 4 SB85_15915 PF03458 UPF0126 domain SB85_15920 PF07992 Pyridine nucleotide-disulphide oxidoreductase SB85_15930 PF18074 Primosomal protein N C-terminal domain SB85_15930 PF00270 DEAD/DEAH box helicase SB85_15930 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SB85_15930 PF17764 3′ DNA-binding domain (3′BD) SB85_15930 PF00271 Helicase conserved C-terminal domain SB85_15940 PF01554 MatE SB85_15945 PF01343 Peptidase family S49 SB85_15970 PF01300 Telomere recombination SB85_15975 PF13368 Topoisomerase C-terminal repeat SB85_15975 PF01751 Toprim domain SB85_15975 PF01131 DNA topoisomerase SB85_15980 PF06271 RDD family SB85_15990 PF04361 Protein of unknown function (DUF494) SB85_15995 PF17782 DprA winged helix domain SB85_15995 PF02481 DNA recombination-mediator protein A SB85_16000 PF01476 LysM domain SB85_16005 PF01327 Polypeptide deformylase SB85_16010 PF02911 Formyl transferase, C-terminal domain SB85_16010 PF00551 Formyl transferase SB85_16015 PF01189 16S rRNA methyltransferase RsmB/F SB85_16015 PF01029 NusB family SB85_16020 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SB85_16035 PF00535 Glycosyl transferase family 2 SB85_16055 PF00925 GTP cyclohydrolase II SB85_16070 PF02580 D-Tyr-tRNA(Tyr) deacylase SB85_16075 PF04545 Sigma-70, region 4 SB85_16075 PF04542 Sigma-70 region 2 SB85_16075 PF03979 Sigma-70 factor, region 1.1 SB85_16075 PF00140 Sigma-70 factor, region 1.2 SB85_16075 PF04546 Sigma-70, non-essential region SB85_16075 PF04539 Sigma-70 region 3 SB85_16085 PF07690 Major Facilitator Superfamily SB85_16090 PF00356 Bacterial regulatory proteins, lacI family SB85_16090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SB85_16095 PF07971 Glycosyl hydrolase family 92 SB85_16095 PF17678 Glycosyl hydrolase family 92 N-terminal domain SB85_16100 PF11896 Domain of unknown function (DUF3416) SB85_16100 PF00128 Alpha amylase, catalytic domain SB85_16105 PF00128 Alpha amylase, catalytic domain SB85_16105 PF16657 Maltogenic Amylase, C-terminal domain SB85_16110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SB85_16110 PF00128 Alpha amylase, catalytic domain SB85_16110 PF02806 Alpha amylase, C-terminal all-beta domain SB85_16155 PF04542 Sigma-70 region 2 SB85_16155 PF04545 Sigma-70, region 4 SB85_16180 PF00356 Bacterial regulatory proteins, lacI family SB85_16190 PF07995 Glucose / Sorbosone dehydrogenase SB85_16195 PF00149 Calcineurin-like phosphoesterase SB85_16210 PF00873 AcrB/AcrD/AcrF family SB85_16215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SB85_16215 PF00529 HlyD membrane-fusion protein of T1SS SB85_16220 PF00486 Transcriptional regulatory protein, C terminal SB85_16220 PF00072 Response regulator receiver domain SB85_16225 PF00512 His Kinase A (phospho-acceptor) domain SB85_16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16225 PF00672 HAMP domain SB85_16235 PF00440 Bacterial regulatory proteins, tetR family SB85_16245 PF12706 Beta-lactamase superfamily domain SB85_16260 PF07690 Major Facilitator Superfamily SB85_16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_16280 PF02203 Tar ligand binding domain homologue SB85_16280 PF00672 HAMP domain SB85_16285 PF05067 Manganese containing catalase SB85_16290 PF05974 Domain of unknown function (DUF892) SB85_16295 PF05974 Domain of unknown function (DUF892) SB85_16305 PF00440 Bacterial regulatory proteins, tetR family SB85_16310 PF00111 2Fe-2S iron-sulfur cluster binding domain SB85_16310 PF00175 Oxidoreductase NAD-binding domain SB85_16310 PF00970 Oxidoreductase FAD-binding domain SB85_16315 PF00487 Fatty acid desaturase SB85_16335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SB85_16335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SB85_16335 PF00205 Thiamine pyrophosphate enzyme, central domain SB85_16340 PF00512 His Kinase A (phospho-acceptor) domain SB85_16340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16345 PF00072 Response regulator receiver domain SB85_16345 PF00158 Sigma-54 interaction domain SB85_16345 PF02954 Bacterial regulatory protein, Fis family SB85_16360 PF07690 Major Facilitator Superfamily SB85_16365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SB85_16365 PF14824 Sirohaem biosynthesis protein central SB85_16365 PF10414 Sirohaem synthase dimerisation region SB85_16375 PF13195 Protein of unknown function (DUF4011) SB85_16375 PF13086 AAA domain SB85_16375 PF13195 Protein of unknown function (DUF4011) SB85_16375 PF13087 AAA domain SB85_16375 PF13086 AAA domain SB85_16375 PF13087 AAA domain SB85_16380 PF05598 Transposase domain (DUF772) SB85_16380 PF01609 Transposase DDE domain SB85_16385 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_16385 PF01610 Transposase SB85_16385 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_16390 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SB85_16390 PF00128 Alpha amylase, catalytic domain SB85_16395 PF00128 Alpha amylase, catalytic domain SB85_16400 PF02446 4-alpha-glucanotransferase SB85_16405 PF11941 Domain of unknown function (DUF3459) SB85_16405 PF00128 Alpha amylase, catalytic domain SB85_16405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SB85_16410 PF00128 Alpha amylase, catalytic domain SB85_16410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SB85_16410 PF02806 Alpha amylase, C-terminal all-beta domain SB85_16415 PF08323 Starch synthase catalytic domain SB85_16415 PF00534 Glycosyl transferases group 1 SB85_16425 PF02954 Bacterial regulatory protein, Fis family SB85_16425 PF00072 Response regulator receiver domain SB85_16425 PF00158 Sigma-54 interaction domain SB85_16430 PF00072 Response regulator receiver domain SB85_16430 PF13188 PAS domain SB85_16430 PF08448 PAS fold SB85_16430 PF00512 His Kinase A (phospho-acceptor) domain SB85_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16435 PF00857 Isochorismatase family SB85_16440 PF13632 Glycosyl transferase family group 2 SB85_16450 PF00072 Response regulator receiver domain SB85_16450 PF04397 LytTr DNA-binding domain SB85_16455 PF03900 Porphobilinogen deaminase, C-terminal domain SB85_16455 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SB85_16470 PF01638 HxlR-like helix-turn-helix SB85_16485 PF00326 Prolyl oligopeptidase family SB85_16485 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SB85_16495 PF00155 Aminotransferase class I and II SB85_16500 PF00326 Prolyl oligopeptidase family SB85_16500 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SB85_16505 PF04304 Protein of unknown function (DUF454) SB85_16515 PF01678 Diaminopimelate epimerase SB85_16525 PF00589 Phage integrase family SB85_16525 PF02899 Phage integrase, N-terminal SAM-like domain SB85_16535 PF00227 Proteasome subunit SB85_16540 PF07724 AAA domain (Cdc48 subfamily) SB85_16540 PF10431 C-terminal, D2-small domain, of ClpB protein SB85_16540 PF00004 ATPase family associated with various cellular activities (AAA) SB85_16560 PF01209 ubiE/COQ5 methyltransferase family SB85_16565 PF11838 ERAP1-like C-terminal domain SB85_16565 PF01433 Peptidase family M1 domain SB85_16570 PF00561 alpha/beta hydrolase fold SB85_16570 PF00364 Biotin-requiring enzyme SB85_16585 PF13360 PQQ-like domain SB85_16590 PF00497 Bacterial extracellular solute-binding proteins, family 3 SB85_16605 PF00107 Zinc-binding dehydrogenase SB85_16605 PF08240 Alcohol dehydrogenase GroES-like domain SB85_16615 PF01590 GAF domain SB85_16615 PF00158 Sigma-54 interaction domain SB85_16615 PF02954 Bacterial regulatory protein, Fis family SB85_16630 PF00294 pfkB family carbohydrate kinase SB85_16640 PF04085 rod shape-determining protein MreC SB85_16650 PF00905 Penicillin binding protein transpeptidase domain SB85_16650 PF03717 Penicillin-binding Protein dimerisation domain SB85_16655 PF01098 Cell cycle protein SB85_16665 PF00295 Glycosyl hydrolases family 28 SB85_16670 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SB85_16670 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SB85_16675 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SB85_16680 PF02233 NAD(P) transhydrogenase beta subunit SB85_16685 PF00171 Aldehyde dehydrogenase family SB85_16690 PF13406 Transglycosylase SLT domain SB85_16695 PF03330 Lytic transglycolase SB85_16695 PF05036 Sporulation related domain SB85_16700 PF00768 D-alanyl-D-alanine carboxypeptidase SB85_16700 PF07943 Penicillin-binding protein 5, C-terminal domain SB85_16730 PF04359 Protein of unknown function (DUF493) SB85_16735 PF03099 Biotin/lipoate A/B protein ligase family SB85_16740 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SB85_16740 PF04055 Radical SAM superfamily SB85_16745 PF00595 PDZ domain SB85_16745 PF03572 Peptidase family S41 SB85_16745 PF11818 C-terminal domain of tail specific protease (DUF3340) SB85_16745 PF17804 Tail specific protease N-terminal domain SB85_16755 PF03466 LysR substrate binding domain SB85_16755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_16765 PF07745 Glycosyl hydrolase family 53 SB85_16770 PF00293 NUDIX domain SB85_16770 PF01467 Cytidylyltransferase-like SB85_16785 PF01555 DNA methylase SB85_16800 PF08338 Domain of unknown function (DUF1731) SB85_16800 PF01370 NAD dependent epimerase/dehydratase family SB85_16810 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SB85_16810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SB85_16815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SB85_16815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SB85_16820 PF04972 BON domain SB85_16830 PF00512 His Kinase A (phospho-acceptor) domain SB85_16830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16830 PF07689 KaiB domain SB85_16835 PF00072 Response regulator receiver domain SB85_16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16840 PF00512 His Kinase A (phospho-acceptor) domain SB85_16850 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SB85_16870 PF03330 Lytic transglycolase SB85_16880 PF07702 UTRA domain SB85_16880 PF00392 Bacterial regulatory proteins, gntR family SB85_16885 PF07690 Major Facilitator Superfamily SB85_16890 PF00356 Bacterial regulatory proteins, lacI family SB85_16895 PF01380 SIS domain SB85_16900 PF01979 Amidohydrolase family SB85_16910 PF01743 Poly A polymerase head domain SB85_16910 PF12627 Probable RNA and SrmB- binding site of polymerase A SB85_16910 PF01966 HD domain SB85_16915 PF01464 Transglycosylase SLT domain SB85_16915 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SB85_16920 PF07715 TonB-dependent Receptor Plug Domain SB85_16920 PF00593 TonB dependent receptor SB85_16935 PF01323 DSBA-like thioredoxin domain SB85_16940 PF00034 Cytochrome c SB85_16945 PF01926 50S ribosome-binding GTPase SB85_16955 PF12833 Helix-turn-helix domain SB85_16960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SB85_16970 PF04107 Glutamate-cysteine ligase family 2(GCS2) SB85_16975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_16975 PF00512 His Kinase A (phospho-acceptor) domain SB85_16975 PF00672 HAMP domain SB85_16980 PF00486 Transcriptional regulatory protein, C terminal SB85_16980 PF00072 Response regulator receiver domain SB85_16985 PF02583 Metal-sensitive transcriptional repressor SB85_16990 PF00107 Zinc-binding dehydrogenase SB85_16990 PF08240 Alcohol dehydrogenase GroES-like domain SB85_16995 PF04828 Glutathione-dependent formaldehyde-activating enzyme SB85_17000 PF00756 Putative esterase SB85_17005 PF00392 Bacterial regulatory proteins, gntR family SB85_17005 PF00155 Aminotransferase class I and II SB85_17010 PF02567 Phenazine biosynthesis-like protein SB85_17015 PF00892 EamA-like transporter family SB85_17025 PF02645 Uncharacterised protein, DegV family COG1307 SB85_17030 PF01323 DSBA-like thioredoxin domain SB85_17050 PF00449 Urease alpha-subunit, N-terminal domain SB85_17050 PF01979 Amidohydrolase family SB85_17055 PF01979 Amidohydrolase family SB85_17065 PF00462 Glutaredoxin SB85_17070 PF01522 Polysaccharide deacetylase SB85_17090 PF00155 Aminotransferase class I and II SB85_17095 PF03193 RsgA GTPase SB85_17110 PF00128 Alpha amylase, catalytic domain SB85_17125 PF00356 Bacterial regulatory proteins, lacI family SB85_17130 PF00106 short chain dehydrogenase SB85_17135 PF03600 Citrate transporter SB85_17145 PF00486 Transcriptional regulatory protein, C terminal SB85_17145 PF00072 Response regulator receiver domain SB85_17150 PF08521 Two-component sensor kinase N-terminal SB85_17150 PF00512 His Kinase A (phospho-acceptor) domain SB85_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_17160 PF00990 Diguanylate cyclase, GGDEF domain SB85_17170 PF00072 Response regulator receiver domain SB85_17170 PF00196 Bacterial regulatory proteins, luxR family SB85_17180 PF00512 His Kinase A (phospho-acceptor) domain SB85_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_17180 PF00072 Response regulator receiver domain SB85_17180 PF01627 Hpt domain SB85_17180 PF00672 HAMP domain SB85_17190 PF00375 Sodium:dicarboxylate symporter family SB85_17195 PF00390 Malic enzyme, N-terminal domain SB85_17195 PF03949 Malic enzyme, NAD binding domain SB85_17195 PF01515 Phosphate acetyl/butaryl transferase SB85_17215 PF00005 ABC transporter SB85_17215 PF00664 ABC transporter transmembrane region SB85_17215 PF03412 Peptidase C39 family SB85_17240 PF03279 Bacterial lipid A biosynthesis acyltransferase SB85_17245 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SB85_17250 PF02321 Outer membrane efflux protein SB85_17280 PF00106 short chain dehydrogenase SB85_17290 PF00072 Response regulator receiver domain SB85_17290 PF00486 Transcriptional regulatory protein, C terminal SB85_17295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_17295 PF00512 His Kinase A (phospho-acceptor) domain SB85_17295 PF08521 Two-component sensor kinase N-terminal SB85_17300 PF00990 Diguanylate cyclase, GGDEF domain SB85_17305 PF00180 Isocitrate/isopropylmalate dehydrogenase SB85_17310 PF00694 Aconitase C-terminal domain SB85_17325 PF08502 LeuA allosteric (dimerisation) domain SB85_17325 PF00682 HMGL-like SB85_17330 PF00291 Pyridoxal-phosphate dependent enzyme SB85_17340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SB85_17340 PF00205 Thiamine pyrophosphate enzyme, central domain SB85_17340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SB85_17345 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SB85_17345 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SB85_17355 PF02028 BCCT, betaine/carnitine/choline family transporter SB85_17360 PF00672 HAMP domain SB85_17360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_17360 PF02203 Tar ligand binding domain homologue SB85_17365 PF01964 Radical SAM ThiC family SB85_17365 PF13667 ThiC-associated domain SB85_17375 PF00326 Prolyl oligopeptidase family SB85_17375 PF07676 WD40-like Beta Propeller Repeat SB85_17385 PF00593 TonB dependent receptor SB85_17385 PF07715 TonB-dependent Receptor Plug Domain SB85_17395 PF00719 Inorganic pyrophosphatase SB85_17405 PF03030 Inorganic H+ pyrophosphatase SB85_17420 PF00365 Phosphofructokinase SB85_17430 PF08245 Mur ligase middle domain SB85_17430 PF02875 Mur ligase family, glutamate ligase domain SB85_17430 PF01225 Mur ligase family, catalytic domain SB85_17445 PF09335 SNARE associated Golgi protein SB85_17470 PF00520 Ion transport protein SB85_17470 PF00027 Cyclic nucleotide-binding domain SB85_17475 PF00202 Aminotransferase class-III SB85_17485 PF00127 Copper binding proteins, plastocyanin/azurin family SB85_17490 PF00202 Aminotransferase class-III SB85_17495 PF02581 Thiamine monophosphate synthase SB85_17500 PF00301 Rubredoxin SB85_17505 PF13369 Transglutaminase-like superfamily SB85_17515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SB85_17525 PF01812 5-formyltetrahydrofolate cyclo-ligase family SB85_17535 PF05164 Cell division protein ZapA SB85_17545 PF00563 EAL domain SB85_17545 PF00990 Diguanylate cyclase, GGDEF domain SB85_17545 PF03707 Bacterial signalling protein N terminal repeat SB85_17550 PF03695 Uncharacterised protein family (UPF0149) SB85_17555 PF00557 Metallopeptidase family M24 SB85_17555 PF05195 Aminopeptidase P, N-terminal domain SB85_17565 PF00557 Metallopeptidase family M24 SB85_17575 PF06969 HemN C-terminal domain SB85_17575 PF04055 Radical SAM superfamily SB85_17580 PF01725 Ham1 family SB85_17585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SB85_17590 PF01138 3' exoribonuclease family, domain 1 SB85_17590 PF03725 3' exoribonuclease family, domain 2 SB85_17595 PF03755 YicC-like family, N-terminal region SB85_17595 PF08340 Domain of unknown function (DUF1732) SB85_17605 PF02472 Biopolymer transport protein ExbD/TolR SB85_17610 PF01618 MotA/TolQ/ExbB proton channel family SB85_17615 PF04304 Protein of unknown function (DUF454) SB85_17620 PF01126 Heme oxygenase SB85_17650 PF00625 Guanylate kinase SB85_17655 PF01192 RNA polymerase Rpb6 SB85_17660 PF02824 TGS domain SB85_17660 PF13291 ACT domain SB85_17660 PF04607 Region found in RelA / SpoT proteins SB85_17665 PF01042 Endoribonuclease L-PSP SB85_17670 PF00271 Helicase conserved C-terminal domain SB85_17670 PF00270 DEAD/DEAH box helicase SB85_17670 PF17191 RecG wedge domain SB85_17675 PF01156 Inosine-uridine preferring nucleoside hydrolase SB85_17680 PF01197 Ribosomal protein L31 SB85_17685 PF00285 Citrate synthase, C-terminal domain SB85_17695 PF00912 Transglycosylase SB85_17695 PF17092 Penicillin-binding protein OB-like domain SB85_17695 PF00905 Penicillin binding protein transpeptidase domain SB85_17720 PF00263 Bacterial type II and III secretion system protein SB85_17720 PF03958 Bacterial type II/III secretion system short domain SB85_17720 PF11741 AMIN domain SB85_17720 PF07660 Secretin and TonB N terminus short domain SB85_17725 PF17863 AAA lid domain SB85_17725 PF07726 ATPase family associated with various cellular activities (AAA) SB85_17730 PF01882 Protein of unknown function DUF58 SB85_17740 PF13519 von Willebrand factor type A domain SB85_17755 PF00375 Sodium:dicarboxylate symporter family SB85_17765 PF00456 Transketolase, thiamine diphosphate binding domain SB85_17765 PF02779 Transketolase, pyrimidine binding domain SB85_17765 PF02780 Transketolase, C-terminal domain SB85_17820 PF03965 Penicillinase repressor SB85_17840 PF03459 TOBE domain SB85_17840 PF00005 ABC transporter SB85_17845 PF00528 Binding-protein-dependent transport system inner membrane component SB85_17855 PF00753 Metallo-beta-lactamase superfamily SB85_17855 PF04273 Putative phosphatase (DUF442) SB85_17860 PF01022 Bacterial regulatory protein, arsR family SB85_17875 PF00873 AcrB/AcrD/AcrF family SB85_17885 PF00085 Thioredoxin SB85_17895 PF03922 OmpW family SB85_17900 PF03922 OmpW family SB85_17905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SB85_17905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SB85_17920 PF00672 HAMP domain SB85_17920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_17935 PF00162 Phosphoglycerate kinase SB85_17945 PF02887 Pyruvate kinase, alpha/beta domain SB85_17945 PF00224 Pyruvate kinase, barrel domain SB85_17955 PF00274 Fructose-bisphosphate aldolase class-I SB85_17960 PF00072 Response regulator receiver domain SB85_17960 PF00486 Transcriptional regulatory protein, C terminal SB85_17965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_17965 PF00672 HAMP domain SB85_17965 PF00512 His Kinase A (phospho-acceptor) domain SB85_17975 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SB85_17975 PF08479 POTRA domain, ShlB-type SB85_17980 PF01661 Macro domain SB85_17995 PF01156 Inosine-uridine preferring nucleoside hydrolase SB85_18005 PF00291 Pyridoxal-phosphate dependent enzyme SB85_18010 PF10414 Sirohaem synthase dimerisation region SB85_18010 PF14824 Sirohaem biosynthesis protein central SB85_18010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SB85_18015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_18015 PF03466 LysR substrate binding domain SB85_18025 PF00512 His Kinase A (phospho-acceptor) domain SB85_18025 PF00672 HAMP domain SB85_18025 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB SB85_18025 PF08448 PAS fold SB85_18025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_18030 PF03960 ArsC family SB85_18050 PF01507 Phosphoadenosine phosphosulfate reductase family SB85_18055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SB85_18055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SB85_18060 PF00175 Oxidoreductase NAD-binding domain SB85_18060 PF00258 Flavodoxin SB85_18060 PF00667 FAD binding domain SB85_18065 PF01507 Phosphoadenosine phosphosulfate reductase family SB85_18070 PF00009 Elongation factor Tu GTP binding domain SB85_18075 PF01433 Peptidase family M1 domain SB85_18075 PF11838 ERAP1-like C-terminal domain SB85_18090 PF13439 Glycosyltransferase Family 4 SB85_18090 PF00534 Glycosyl transferases group 1 SB85_18100 PF13302 Acetyltransferase (GNAT) domain SB85_18110 PF08032 RNA 2'-O ribose methyltransferase substrate binding SB85_18110 PF00588 SpoU rRNA Methylase family SB85_18125 PF00356 Bacterial regulatory proteins, lacI family SB85_18130 PF04389 Peptidase family M28 SB85_18130 PF02225 PA domain SB85_18135 PF01741 Large-conductance mechanosensitive channel, MscL SB85_18140 PF01557 Fumarylacetoacetate (FAA) hydrolase family SB85_18160 PF03600 Citrate transporter SB85_18160 PF02080 TrkA-C domain SB85_18165 PF02390 Putative methyltransferase SB85_18170 PF05690 Thiazole biosynthesis protein ThiG SB85_18195 PF04185 Phosphoesterase family SB85_18195 PF05506 Domain of unknown function (DUF756) SB85_18200 PF07660 Secretin and TonB N terminus short domain SB85_18200 PF00593 TonB dependent receptor SB85_18200 PF07715 TonB-dependent Receptor Plug Domain SB85_18205 PF18030 RimK PreATP-grasp domain SB85_18205 PF08443 RimK-like ATP-grasp domain SB85_18210 PF00072 Response regulator receiver domain SB85_18210 PF00486 Transcriptional regulatory protein, C terminal SB85_18215 PF00989 PAS fold SB85_18215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_18215 PF00512 His Kinase A (phospho-acceptor) domain SB85_18215 PF11808 Phosphate regulon sensor protein PhoR SB85_18220 PF01121 Dephospho-CoA kinase SB85_18225 PF01478 Type IV leader peptidase family SB85_18225 PF06750 Bacterial Peptidase A24 N-terminal domain SB85_18230 PF00482 Type II secretion system (T2SS), protein F SB85_18235 PF07963 Prokaryotic N-terminal methylation motif SB85_18235 PF00114 Pilin (bacterial filament) SB85_18240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SB85_18240 PF00437 Type II/IV secretion system protein SB85_18245 PF00158 Sigma-54 interaction domain SB85_18245 PF00072 Response regulator receiver domain SB85_18245 PF02954 Bacterial regulatory protein, Fis family SB85_18250 PF00512 His Kinase A (phospho-acceptor) domain SB85_18250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_18255 PF08442 ATP-grasp domain SB85_18255 PF00549 CoA-ligase SB85_18260 PF02629 CoA binding domain SB85_18260 PF00549 CoA-ligase SB85_18275 PF10017 Histidine-specific methyltransferase, SAM-dependent SB85_18280 PF12867 DinB superfamily SB85_18280 PF03781 Sulfatase-modifying factor enzyme 1 SB85_18310 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SB85_18310 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SB85_18315 PF02685 Glucokinase SB85_18320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SB85_18325 PF00920 Dehydratase family SB85_18340 PF00528 Binding-protein-dependent transport system inner membrane component SB85_18345 PF00528 Binding-protein-dependent transport system inner membrane component SB85_18350 PF13416 Bacterial extracellular solute-binding protein SB85_18365 PF00356 Bacterial regulatory proteins, lacI family SB85_18375 PF03795 YCII-related domain SB85_18380 PF02616 Segregation and condensation protein ScpA SB85_18385 PF01479 S4 domain SB85_18385 PF00849 RNA pseudouridylate synthase SB85_18405 PF05662 Coiled stalk of trimeric autotransporter adhesin SB85_18405 PF05658 Head domain of trimeric autotransporter adhesin SB85_18405 PF03895 YadA-like membrane anchor domain SB85_18405 PF13018 Extended Signal Peptide of Type V secretion system SB85_18410 PF00072 Response regulator receiver domain SB85_18410 PF00196 Bacterial regulatory proteins, luxR family SB85_18420 PF13185 GAF domain SB85_18420 PF00990 Diguanylate cyclase, GGDEF domain SB85_18420 PF00563 EAL domain SB85_18430 PF00795 Carbon-nitrogen hydrolase SB85_18435 PF00155 Aminotransferase class I and II SB85_18450 PF01578 Cytochrome C assembly protein SB85_18460 PF03100 CcmE SB85_18465 PF01578 Cytochrome C assembly protein SB85_18465 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SB85_18470 PF08534 Redoxin SB85_18475 PF03918 Cytochrome C biogenesis protein SB85_18485 PF02785 Biotin carboxylase C-terminal domain SB85_18485 PF00289 Biotin carboxylase, N-terminal domain SB85_18485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SB85_18490 PF00561 alpha/beta hydrolase fold SB85_18500 PF00005 ABC transporter SB85_18500 PF00664 ABC transporter transmembrane region SB85_18505 PF00005 ABC transporter SB85_18505 PF00664 ABC transporter transmembrane region SB85_18510 PF01654 Cytochrome bd terminal oxidase subunit I SB85_18535 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SB85_18535 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SB85_18540 PF00171 Aldehyde dehydrogenase family SB85_18545 PF00696 Amino acid kinase family SB85_18545 PF01472 PUA domain SB85_18555 PF00206 Lyase SB85_18560 PF01118 Semialdehyde dehydrogenase, NAD binding domain SB85_18570 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase SB85_18570 PF00696 Amino acid kinase family SB85_18575 PF07687 Peptidase dimerisation domain SB85_18575 PF01546 Peptidase family M20/M25/M40 SB85_18585 PF00764 Arginosuccinate synthase SB85_18590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SB85_18590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SB85_18605 PF02657 Fe-S metabolism associated domain SB85_18630 PF01258 Prokaryotic dksA/traR C4-type zinc finger SB85_18640 PF01809 Putative membrane protein insertion efficiency factor SB85_18650 PF08460 Bacterial SH3 domain SB85_18650 PF01551 Peptidase family M23 SB85_18655 PF01095 Pectinesterase SB85_18665 PF13419 Haloacid dehalogenase-like hydrolase SB85_18675 PF01979 Amidohydrolase family SB85_18680 PF06736 Protein of unknown function (DUF1211) SB85_18690 PF09285 Elongation factor P, C-terminal SB85_18690 PF01132 Elongation factor P (EF-P) OB domain SB85_18690 PF08207 Elongation factor P (EF-P) KOW-like domain SB85_18695 PF04055 Radical SAM superfamily SB85_18700 PF03707 Bacterial signalling protein N terminal repeat SB85_18700 PF00990 Diguanylate cyclase, GGDEF domain SB85_18700 PF00563 EAL domain SB85_18715 PF00459 Inositol monophosphatase family SB85_18720 PF00672 HAMP domain SB85_18720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_18720 PF02203 Tar ligand binding domain homologue SB85_18725 PF02355 Protein export membrane protein SB85_18725 PF07549 SecD/SecF GG Motif SB85_18730 PF02355 Protein export membrane protein SB85_18730 PF13721 SecD export protein N-terminal TM region SB85_18730 PF07549 SecD/SecF GG Motif SB85_18735 PF02699 Preprotein translocase subunit SB85_18740 PF01702 Queuine tRNA-ribosyltransferase SB85_18745 PF00005 ABC transporter SB85_18745 PF00664 ABC transporter transmembrane region SB85_18755 PF00144 Beta-lactamase SB85_18765 PF03812 2-keto-3-deoxygluconate permease SB85_18775 PF00990 Diguanylate cyclase, GGDEF domain SB85_18775 PF00072 Response regulator receiver domain SB85_18780 PF01479 S4 domain SB85_18780 PF00849 RNA pseudouridylate synthase SB85_18785 PF00271 Helicase conserved C-terminal domain SB85_18785 PF00270 DEAD/DEAH box helicase SB85_18785 PF03880 DbpA RNA binding domain SB85_18800 PF01494 FAD binding domain SB85_18825 PF06029 AlkA N-terminal domain SB85_18825 PF02805 Metal binding domain of Ada SB85_18825 PF12833 Helix-turn-helix domain SB85_18825 PF00730 HhH-GPD superfamily base excision DNA repair protein SB85_18830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SB85_18830 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SB85_18840 PF00654 Voltage gated chloride channel SB85_18855 PF00593 TonB dependent receptor SB85_18855 PF07715 TonB-dependent Receptor Plug Domain SB85_18860 PF00893 Small Multidrug Resistance protein SB85_18870 PF10518 TAT (twin-arginine translocation) pathway signal sequence SB85_18870 PF00111 2Fe-2S iron-sulfur cluster binding domain SB85_18870 PF01799 [2Fe-2S] binding domain SB85_18875 PF03450 CO dehydrogenase flavoprotein C-terminal domain SB85_18875 PF00941 FAD binding domain in molybdopterin dehydrogenase SB85_18880 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SB85_18880 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SB85_18885 PF12804 MobA-like NTP transferase domain SB85_18890 PF02625 XdhC and CoxI family SB85_18890 PF13478 XdhC Rossmann domain SB85_18895 PF06224 Winged helix DNA-binding domain SB85_18905 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SB85_18905 PF01137 RNA 3'-terminal phosphate cyclase SB85_18910 PF01139 tRNA-splicing ligase RtcB SB85_18920 PF00158 Sigma-54 interaction domain SB85_18920 PF06956 Regulator of RNA terminal phosphate cyclase SB85_18925 PF01475 Ferric uptake regulator family SB85_18930 PF00749 tRNA synthetases class I (E and Q), catalytic domain SB85_18950 PF06123 Inner membrane protein CreD SB85_18955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_18955 PF00512 His Kinase A (phospho-acceptor) domain SB85_18955 PF00672 HAMP domain SB85_18960 PF00072 Response regulator receiver domain SB85_18960 PF00486 Transcriptional regulatory protein, C terminal SB85_18965 PF00990 Diguanylate cyclase, GGDEF domain SB85_18965 PF17151 Periplasmic sensor domain SB85_18970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SB85_18975 PF09234 Domain of unknown function (DUF1963) SB85_18985 PF03461 TRCF domain SB85_18985 PF17757 UvrB interaction domain SB85_18985 PF00270 DEAD/DEAH box helicase SB85_18985 PF00271 Helicase conserved C-terminal domain SB85_18985 PF02559 CarD-like/TRCF domain SB85_18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_18995 PF01627 Hpt domain SB85_18995 PF02895 Signal transducing histidine kinase, homodimeric domain SB85_18995 PF01584 CheW-like domain SB85_19000 PF13426 PAS domain SB85_19000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_19000 PF00672 HAMP domain SB85_19005 PF00672 HAMP domain SB85_19005 PF02203 Tar ligand binding domain homologue SB85_19005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_19010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_19010 PF12729 Four helix bundle sensory module for signal transduction SB85_19010 PF00672 HAMP domain SB85_19015 PF01584 CheW-like domain SB85_19020 PF00563 EAL domain SB85_19020 PF00990 Diguanylate cyclase, GGDEF domain SB85_19020 PF03707 Bacterial signalling protein N terminal repeat SB85_19025 PF01739 CheR methyltransferase, SAM binding domain SB85_19025 PF03705 CheR methyltransferase, all-alpha domain SB85_19030 PF01339 CheB methylesterase SB85_19030 PF00072 Response regulator receiver domain SB85_19035 PF12833 Helix-turn-helix domain SB85_19035 PF02311 AraC-like ligand binding domain SB85_19050 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SB85_19050 PF01648 4'-phosphopantetheinyl transferase superfamily SB85_19060 PF00300 Histidine phosphatase superfamily (branch 1) SB85_19065 PF04493 Endonuclease V SB85_19070 PF02678 Pirin SB85_19070 PF05726 Pirin C-terminal cupin domain SB85_19080 PF02678 Pirin SB85_19080 PF05726 Pirin C-terminal cupin domain SB85_19085 PF13722 5TM C-terminal transporter carbon starvation CstA SB85_19085 PF02554 Carbon starvation protein CstA SB85_19090 PF04328 Selenoprotein, putative SB85_19115 PF00326 Prolyl oligopeptidase family SB85_19115 PF07676 WD40-like Beta Propeller Repeat SB85_19115 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region SB85_19125 PF00854 POT family SB85_19140 PF00356 Bacterial regulatory proteins, lacI family SB85_19150 PF03825 Nucleoside H+ symporter SB85_19155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SB85_19155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SB85_19180 PF05199 GMC oxidoreductase SB85_19180 PF00732 GMC oxidoreductase SB85_19195 PF00436 Single-strand binding protein family SB85_19200 PF00348 Polyprenyl synthetase SB85_19215 PF08245 Mur ligase middle domain SB85_19230 PF01842 ACT domain SB85_19230 PF00696 Amino acid kinase family SB85_19240 PF02567 Phenazine biosynthesis-like protein SB85_19250 PF02566 OsmC-like protein SB85_19265 PF01551 Peptidase family M23 SB85_19265 PF08525 Opacity-associated protein A N-terminal motif SB85_19265 PF01476 LysM domain SB85_19280 PF01965 DJ-1/PfpI family SB85_19295 PF01458 Uncharacterized protein family (UPF0051) SB85_19300 PF00005 ABC transporter SB85_19305 PF01458 Uncharacterized protein family (UPF0051) SB85_19310 PF00266 Aminotransferase class-V SB85_19320 PF00355 Rieske [2Fe-2S] domain SB85_19325 PF00593 TonB dependent receptor SB85_19325 PF07715 TonB-dependent Receptor Plug Domain SB85_19330 PF18331 PKHD-type hydroxylase C-terminal domain SB85_19330 PF13640 2OG-Fe(II) oxygenase superfamily SB85_19340 PF00486 Transcriptional regulatory protein, C terminal SB85_19340 PF00072 Response regulator receiver domain SB85_19365 PF01636 Phosphotransferase enzyme family SB85_19370 PF00483 Nucleotidyl transferase SB85_19375 PF00308 Bacterial dnaA protein SB85_19380 PF01594 AI-2E family transporter SB85_19390 PF00586 AIR synthase related protein, N-terminal domain SB85_19390 PF02769 AIR synthase related protein, C-terminal domain SB85_19405 PF00551 Formyl transferase SB85_19425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SB85_19435 PF01380 SIS domain SB85_19435 PF00571 CBS domain SB85_19455 PF00005 ABC transporter SB85_19460 PF00309 Sigma-54 factor, Activator interacting domain (AID) SB85_19460 PF04552 Sigma-54, DNA binding domain SB85_19460 PF04963 Sigma-54 factor, core binding domain SB85_19465 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SB85_19470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SB85_19475 PF07475 HPr Serine kinase C-terminal domain SB85_19475 PF02603 HPr Serine kinase N terminus SB85_19480 PF03668 P-loop ATPase protein family SB85_19490 PF00381 PTS HPr component phosphorylation site SB85_19495 PF02896 PEP-utilising enzyme, TIM barrel domain SB85_19495 PF00391 PEP-utilising enzyme, mobile domain SB85_19495 PF05524 PEP-utilising enzyme, N-terminal SB85_19500 PF00571 CBS domain SB85_19500 PF01769 Divalent cation transporter SB85_19500 PF03448 MgtE intracellular N domain SB85_19520 PF03600 Citrate transporter SB85_19525 PF00324 Amino acid permease SB85_19535 PF02203 Tar ligand binding domain homologue SB85_19535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_19535 PF00672 HAMP domain SB85_19540 PF02203 Tar ligand binding domain homologue SB85_19540 PF00672 HAMP domain SB85_19540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SB85_19545 PF00544 Pectate lyase SB85_19555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SB85_19555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SB85_19560 PF03652 Holliday junction resolvase SB85_19565 PF02622 Uncharacterized ACR, COG1678 SB85_19575 PF00958 GMP synthase C terminal domain SB85_19575 PF03352 Methyladenine glycosylase SB85_19575 PF00117 Glutamine amidotransferase class-I SB85_19575 PF13673 Acetyltransferase (GNAT) domain SB85_19575 PF13302 Acetyltransferase (GNAT) domain SB85_19590 PF18417 L-lysine epsilon oxidase C-terminal domain SB85_19590 PF17990 L-Lysine epsilon oxidase N-terminal SB85_19615 PF17151 Periplasmic sensor domain SB85_19615 PF00990 Diguanylate cyclase, GGDEF domain SB85_19625 PF00437 Type II/IV secretion system protein SB85_19630 PF00437 Type II/IV secretion system protein SB85_19635 PF01168 Alanine racemase, N-terminal domain SB85_19645 PF03807 NADP oxidoreductase coenzyme F420-dependent SB85_19645 PF14748 Pyrroline-5-carboxylate reductase dimerisation SB85_19660 PF00376 MerR family regulatory protein SB85_19660 PF09278 MerR, DNA binding SB85_19665 PF07690 Major Facilitator Superfamily SB85_19675 PF01243 Pyridoxamine 5'-phosphate oxidase SB85_19675 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SB85_19680 PF01202 Shikimate kinase SB85_19685 PF01761 3-dehydroquinate synthase SB85_19690 PF02321 Outer membrane efflux protein SB85_19695 PF00873 AcrB/AcrD/AcrF family SB85_19700 PF13533 Biotin-lipoyl like SB85_19715 PF12833 Helix-turn-helix domain SB85_19725 PF01208 Uroporphyrinogen decarboxylase (URO-D) SB85_19740 PF07690 Major Facilitator Superfamily SB85_19755 PF04264 YceI-like domain SB85_19770 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_19770 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_19770 PF01610 Transposase SB85_19775 PF13542 Helix-turn-helix domain of transposase family ISL3 SB85_19775 PF01610 Transposase SB85_19775 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 SB85_19790 PF00106 short chain dehydrogenase SB85_19800 PF03466 LysR substrate binding domain SB85_19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SB85_19805 PF17954 Quercetinase C-terminal cupin domain SB85_19805 PF02678 Pirin SB85_19810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SB85_19810 PF00128 Alpha amylase, catalytic domain SB85_19835 PF02599 Global regulator protein family SB85_19840 PF01411 tRNA synthetases class II (A) SB85_19840 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SB85_19840 PF02272 DHHA1 domain SB85_19845 PF02631 RecX family SB85_19850 PF00154 recA bacterial DNA recombination protein SB85_19855 PF01726 LexA DNA binding domain SB85_19855 PF00717 Peptidase S24-like SB85_19860 PF03109 ABC1 family SB85_19865 PF02464 Competence-damaged protein SB85_19870 PF13167 GTP-binding GTPase N-terminal SB85_19870 PF16360 GTP-binding GTPase Middle Region SB85_19870 PF01926 50S ribosome-binding GTPase SB85_19875 PF17209 Hfq protein SB85_19890 PF00004 ATPase family associated with various cellular activities (AAA) SB85_19890 PF01434 Peptidase family M41 SB85_19890 PF06480 FtsH Extracellular SB85_19890 PF17862 AAA+ lid domain SB85_19895 PF01728 FtsJ-like methyltransferase SB85_19900 PF01985 CRS1 / YhbY (CRM) domain SB85_19910 PF01551 Peptidase family M23 SB85_19910 PF01476 LysM domain SB85_19915 PF09335 SNARE associated Golgi protein SB85_19925 PF01975 Survival protein SurE SB85_19930 PF01713 Smr domain SB85_19940 PF08281 Sigma-70, region 4 SB85_19940 PF04542 Sigma-70 region 2 SB85_19950 PF00593 TonB dependent receptor SB85_19950 PF07715 TonB-dependent Receptor Plug Domain SB85_19955 PF01142 tRNA pseudouridine synthase D (TruD) SB85_19960 PF02542 YgbB family SB85_19965 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SB85_19970 PF04977 Septum formation initiator SB85_19975 PF03952 Enolase, N-terminal domain SB85_19975 PF00113 Enolase, C-terminal TIM barrel domain SB85_19985 PF00793 DAHP synthetase I family SB85_19995 PF06418 CTP synthase N-terminus SB85_19995 PF00117 Glutamine amidotransferase class-I SB85_20005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_20005 PF00986 DNA gyrase B subunit, carboxyl terminus SB85_20005 PF00204 DNA gyrase B SB85_20005 PF01751 Toprim domain SB85_20010 PF02611 CDP-diacylglycerol pyrophosphatase SB85_20020 PF01384 Phosphate transporter family SB85_20030 PF01595 Cyclin M transmembrane N-terminal domain SB85_20030 PF03471 Transporter associated domain SB85_20030 PF00571 CBS domain SB85_20045 PF00296 Luciferase-like monooxygenase SB85_20065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SB85_20075 PF00144 Beta-lactamase SB85_20080 PF13426 PAS domain SB85_20080 PF08447 PAS fold SB85_20080 PF05231 MASE1 SB85_20080 PF00990 Diguanylate cyclase, GGDEF domain SB85_20080 PF00563 EAL domain SB85_20080 PF08448 PAS fold SB85_20090 PF01645 Conserved region in glutamate synthase SB85_20095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SB85_20095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SB85_20095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SB85_20105 PF00356 Bacterial regulatory proteins, lacI family SB85_20110 PF00381 PTS HPr component phosphorylation site SB85_20110 PF02896 PEP-utilising enzyme, TIM barrel domain SB85_20110 PF05524 PEP-utilising enzyme, N-terminal SB85_20110 PF00391 PEP-utilising enzyme, mobile domain SB85_20110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SB85_20115 PF00294 pfkB family carbohydrate kinase SB85_20120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SB85_20130 PF00072 Response regulator receiver domain SB85_20130 PF00486 Transcriptional regulatory protein, C terminal SB85_20135 PF00512 His Kinase A (phospho-acceptor) domain SB85_20135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SB85_20150 PF00005 ABC transporter SB85_20150 PF02687 FtsX-like permease family SB85_20150 PF12704 MacB-like periplasmic core domain SB85_20190 PF00550 Phosphopantetheine attachment site SB85_20195 PF00109 Beta-ketoacyl synthase, N-terminal domain SB85_20195 PF02801 Beta-ketoacyl synthase, C-terminal domain SB85_20220 PF04055 Radical SAM superfamily SB85_20220 PF06969 HemN C-terminal domain SB85_20235 PF13746 4Fe-4S dicluster domain SB85_20235 PF12801 4Fe-4S binding domain SB85_20235 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SB85_20245 PF00561 alpha/beta hydrolase fold SB85_20285 PF00593 TonB dependent receptor SB85_20285 PF07715 TonB-dependent Receptor Plug Domain SB85_20315 PF10947 Protein of unknown function (DUF2628) SB85_20320 PF00593 TonB dependent receptor SB85_20320 PF07715 TonB-dependent Receptor Plug Domain SB85_20335 PF01566 Natural resistance-associated macrophage protein SB85_20350 PF08003 Protein of unknown function (DUF1698) SB85_20380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SB85_20380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SB85_20395 PF01370 NAD dependent epimerase/dehydratase family SB85_20400 PF16363 GDP-mannose 4,6 dehydratase SB85_20410 PF01066 CDP-alcohol phosphatidyltransferase SB85_20415 PF01541 GIY-YIG catalytic domain SB85_20415 PF08459 UvrC Helix-hairpin-helix N-terminal SB85_20415 PF02151 UvrB/uvrC motif SB85_20425 PF01451 Low molecular weight phosphotyrosine protein phosphatase SB85_20430 PF02348 Cytidylyltransferase SB85_20435 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SB85_20440 PF00664 ABC transporter transmembrane region SB85_20440 PF00005 ABC transporter SB85_20445 PF02472 Biopolymer transport protein ExbD/TolR SB85_20450 PF01618 MotA/TolQ/ExbB proton channel family SB85_20455 PF00753 Metallo-beta-lactamase superfamily SB85_20455 PF03772 Competence protein SB85_20465 PF00005 ABC transporter SB85_20470 PF02687 FtsX-like permease family SB85_20470 PF12704 MacB-like periplasmic core domain SB85_20480 PF03937 Flavinator of succinate dehydrogenase SB85_20485 PF13237 4Fe-4S dicluster domain SB85_20485 PF13085 2Fe-2S iron-sulfur cluster binding domain SB85_20490 PF00890 FAD binding domain SB85_20490 PF02910 Fumarate reductase flavoprotein C-term SB85_20495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SB85_20500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit