locus-tag class description XSP_000001 PF00308 Bacterial dnaA protein XSP_000001 PF11638 DnaA N-terminal domain XSP_000001 PF08299 Bacterial dnaA protein helix-turn-helix XSP_000002 PF00712 DNA polymerase III beta subunit, N-terminal domain XSP_000002 PF02767 DNA polymerase III beta subunit, central domain XSP_000002 PF02768 DNA polymerase III beta subunit, C-terminal domain XSP_000003 PF02463 RecF/RecN/SMC N terminal domain XSP_000004 PF00204 DNA gyrase B XSP_000004 PF01751 Toprim domain XSP_000004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000004 PF18053 DNA gyrase B subunit insert domain XSP_000004 PF00986 DNA gyrase B subunit, carboxyl terminus XSP_000006 PF01435 Peptidase family M48 XSP_000008 PF03544 Gram-negative bacterial TonB protein C-terminal XSP_000009 PF01618 MotA/TolQ/ExbB proton channel family XSP_000010 PF02472 Biopolymer transport protein ExbD/TolR XSP_000011 PF02472 Biopolymer transport protein ExbD/TolR XSP_000013 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XSP_000015 PF13091 PLD-like domain XSP_000015 PF13396 Phospholipase_D-nuclease N-terminal XSP_000016 PF04055 Radical SAM superfamily XSP_000018 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XSP_000021 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_000021 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_000022 PF13180 PDZ domain XSP_000022 PF03572 Peptidase family S41 XSP_000023 PF01551 Peptidase family M23 XSP_000025 PF04389 Peptidase family M28 XSP_000027 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000028 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000029 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000030 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000030 PF00107 Zinc-binding dehydrogenase XSP_000032 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XSP_000032 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000033 PF00310 Glutamine amidotransferases class-II XSP_000033 PF04898 Glutamate synthase central domain XSP_000033 PF01493 GXGXG motif XSP_000033 PF01645 Conserved region in glutamate synthase XSP_000036 PF00398 Ribosomal RNA adenine dimethylase XSP_000038 PF02678 Pirin XSP_000038 PF05726 Pirin C-terminal cupin domain XSP_000039 PF02525 Flavodoxin-like fold XSP_000040 PF03466 LysR substrate binding domain XSP_000040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000042 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XSP_000042 PF06165 Glycosyltransferase family 36 XSP_000042 PF10091 Putative glucoamylase XSP_000045 PF00271 Helicase conserved C-terminal domain XSP_000045 PF09369 Domain of unknown function (DUF1998) XSP_000045 PF00270 DEAD/DEAH box helicase XSP_000046 PF03006 Haemolysin-III related XSP_000053 PF05649 Peptidase family M13 XSP_000053 PF01431 Peptidase family M13 XSP_000055 PF03466 LysR substrate binding domain XSP_000055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000058 PF07690 Major Facilitator Superfamily XSP_000059 PF01638 HxlR-like helix-turn-helix XSP_000065 PF04542 Sigma-70 region 2 XSP_000065 PF08281 Sigma-70, region 4 XSP_000071 PF01638 HxlR-like helix-turn-helix XSP_000072 PF05532 CsbD-like XSP_000073 PF13188 PAS domain XSP_000073 PF00072 Response regulator receiver domain XSP_000073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000073 PF00512 His Kinase A (phospho-acceptor) domain XSP_000073 PF08448 PAS fold XSP_000076 PF02868 Thermolysin metallopeptidase, alpha-helical domain XSP_000076 PF01447 Thermolysin metallopeptidase, catalytic domain XSP_000076 PF16485 Protealysin propeptide XSP_000078 PF09297 NADH pyrophosphatase zinc ribbon domain XSP_000078 PF00293 NUDIX domain XSP_000079 PF07859 alpha/beta hydrolase fold XSP_000081 PF00085 Thioredoxin XSP_000082 PF00083 Sugar (and other) transporter XSP_000082 PF08946 Osmosensory transporter coiled coil XSP_000090 PF17863 AAA lid domain XSP_000090 PF07726 ATPase family associated with various cellular activities (AAA) XSP_000095 PF06441 Epoxide hydrolase N terminus XSP_000097 PF00440 Bacterial regulatory proteins, tetR family XSP_000097 PF18665 Tetracyclin repressor-like, C-terminal domain XSP_000100 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XSP_000101 PF00155 Aminotransferase class I and II XSP_000102 PF00593 TonB dependent receptor XSP_000102 PF07715 TonB-dependent Receptor Plug Domain XSP_000104 PF07883 Cupin domain XSP_000106 PF00158 Sigma-54 interaction domain XSP_000106 PF02954 Bacterial regulatory protein, Fis family XSP_000106 PF01590 GAF domain XSP_000107 PF00171 Aldehyde dehydrogenase family XSP_000108 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000108 PF00107 Zinc-binding dehydrogenase XSP_000111 PF02735 Ku70/Ku80 beta-barrel domain XSP_000112 PF01068 ATP dependent DNA ligase domain XSP_000112 PF04679 ATP dependent DNA ligase C terminal region XSP_000112 PF13298 DNA polymerase Ligase (LigD) XSP_000113 PF01070 FMN-dependent dehydrogenase XSP_000114 PF07730 Histidine kinase XSP_000115 PF00072 Response regulator receiver domain XSP_000115 PF00196 Bacterial regulatory proteins, luxR family XSP_000118 PF00486 Transcriptional regulatory protein, C terminal XSP_000119 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XSP_000119 PF07055 Enoyl reductase FAD binding domain XSP_000119 PF12241 Trans-2-enoyl-CoA reductase catalytic region XSP_000120 PF00294 pfkB family carbohydrate kinase XSP_000123 PF01095 Pectinesterase XSP_000126 PF00589 Phage integrase family XSP_000126 PF13495 Phage integrase, N-terminal SAM-like domain XSP_000136 PF04542 Sigma-70 region 2 XSP_000136 PF08281 Sigma-70, region 4 XSP_000158 PF11896 Domain of unknown function (DUF3416) XSP_000158 PF00128 Alpha amylase, catalytic domain XSP_000159 PF16657 Maltogenic Amylase, C-terminal domain XSP_000159 PF00128 Alpha amylase, catalytic domain XSP_000160 PF02806 Alpha amylase, C-terminal all-beta domain XSP_000160 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000160 PF00128 Alpha amylase, catalytic domain XSP_000166 PF00248 Aldo/keto reductase family XSP_000167 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000168 PF00135 Carboxylesterase family XSP_000169 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000169 PF07859 alpha/beta hydrolase fold XSP_000171 PF03480 Bacterial extracellular solute-binding protein, family 7 XSP_000173 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component XSP_000174 PF04616 Glycosyl hydrolases family 43 XSP_000174 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain XSP_000175 PF00356 Bacterial regulatory proteins, lacI family XSP_000176 PF04962 KduI/IolB family XSP_000180 PF00657 GDSL-like Lipase/Acylhydrolase XSP_000182 PF00351 Biopterin-dependent aromatic amino acid hydroxylase XSP_000183 PF01037 Lrp/AsnC ligand binding domain XSP_000184 PF00593 TonB dependent receptor XSP_000184 PF07660 Secretin and TonB N terminus short domain XSP_000184 PF07715 TonB-dependent Receptor Plug Domain XSP_000185 PF01734 Patatin-like phospholipase XSP_000187 PF00005 ABC transporter XSP_000190 PF00571 CBS domain XSP_000190 PF00005 ABC transporter XSP_000191 PF00528 Binding-protein-dependent transport system inner membrane component XSP_000193 PF12867 DinB superfamily XSP_000193 PF03781 Sulfatase-modifying factor enzyme 1 XSP_000194 PF10017 Histidine-specific methyltransferase, SAM-dependent XSP_000200 PF01883 Iron-sulfur cluster assembly protein XSP_000200 PF10609 NUBPL iron-transfer P-loop NTPase XSP_000202 PF04264 YceI-like domain XSP_000203 PF13091 PLD-like domain XSP_000204 PF03061 Thioesterase superfamily XSP_000208 PF01161 Phosphatidylethanolamine-binding protein XSP_000210 PF02673 Bacitracin resistance protein BacA XSP_000211 PF00120 Glutamine synthetase, catalytic domain XSP_000211 PF03951 Glutamine synthetase, beta-Grasp domain XSP_000212 PF00543 Nitrogen regulatory protein P-II XSP_000213 PF00909 Ammonium Transporter Family XSP_000214 PF00512 His Kinase A (phospho-acceptor) domain XSP_000214 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000214 PF00989 PAS fold XSP_000215 PF02954 Bacterial regulatory protein, Fis family XSP_000215 PF00158 Sigma-54 interaction domain XSP_000215 PF00072 Response regulator receiver domain XSP_000216 PF00080 Copper/zinc superoxide dismutase (SODC) XSP_000217 PF00080 Copper/zinc superoxide dismutase (SODC) XSP_000218 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_000220 PF00108 Thiolase, N-terminal domain XSP_000220 PF02803 Thiolase, C-terminal domain XSP_000228 PF00581 Rhodanese-like domain XSP_000229 PF02556 Preprotein translocase subunit SecB XSP_000230 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XSP_000230 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XSP_000232 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_000232 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_000232 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_000233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000234 PF02954 Bacterial regulatory protein, Fis family XSP_000234 PF00158 Sigma-54 interaction domain XSP_000234 PF00072 Response regulator receiver domain XSP_000237 PF07690 Major Facilitator Superfamily XSP_000238 PF00588 SpoU rRNA Methylase family XSP_000241 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_000241 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_000242 PF02661 Fic/DOC family XSP_000242 PF13784 Fic/DOC family N-terminal XSP_000243 PF00561 alpha/beta hydrolase fold XSP_000244 PF03692 Putative zinc- or iron-chelating domain XSP_000245 PF00501 AMP-binding enzyme XSP_000246 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XSP_000251 PF03109 ABC1 family XSP_000252 PF01596 O-methyltransferase XSP_000253 PF00849 RNA pseudouridylate synthase XSP_000255 PF00472 RF-1 domain XSP_000257 PF01112 Asparaginase XSP_000258 PF01432 Peptidase family M3 XSP_000259 PF10502 Signal peptidase, peptidase S26 XSP_000260 PF12706 Beta-lactamase superfamily domain XSP_000262 PF00999 Sodium/hydrogen exchanger family XSP_000263 PF03466 LysR substrate binding domain XSP_000263 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000264 PF01274 Malate synthase XSP_000265 PF00463 Isocitrate lyase family XSP_000266 PF00563 EAL domain XSP_000266 PF00990 Diguanylate cyclase, GGDEF domain XSP_000266 PF13426 PAS domain XSP_000270 PF00326 Prolyl oligopeptidase family XSP_000271 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_000271 PF00364 Biotin-requiring enzyme XSP_000271 PF00289 Biotin carboxylase, N-terminal domain XSP_000271 PF02785 Biotin carboxylase C-terminal domain XSP_000271 PF18140 Propionyl-coenzyme A carboxylase BT domain XSP_000272 PF01039 Carboxyl transferase domain XSP_000273 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_000273 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_000273 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_000284 PF07683 Cobalamin synthesis protein cobW C-terminal domain XSP_000284 PF02492 CobW/HypB/UreG, nucleotide-binding domain XSP_000288 PF03969 AFG1-like ATPase XSP_000290 PF01047 MarR family XSP_000291 PF02566 OsmC-like protein XSP_000292 PF12697 Alpha/beta hydrolase family XSP_000296 PF00248 Aldo/keto reductase family XSP_000297 PF16884 N-terminal domain of oxidoreductase XSP_000297 PF00107 Zinc-binding dehydrogenase XSP_000298 PF00248 Aldo/keto reductase family XSP_000300 PF00849 RNA pseudouridylate synthase XSP_000302 PF00271 Helicase conserved C-terminal domain XSP_000302 PF04408 Helicase associated domain (HA2) XSP_000302 PF08482 ATP-dependent helicase C-terminal XSP_000302 PF00270 DEAD/DEAH box helicase XSP_000303 PF02203 Tar ligand binding domain homologue XSP_000303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000303 PF00672 HAMP domain XSP_000304 PF07308 Protein of unknown function (DUF1456) XSP_000305 PF00576 HIUase/Transthyretin family XSP_000306 PF13454 FAD-NAD(P)-binding XSP_000307 PF01014 Uricase XSP_000307 PF09349 OHCU decarboxylase XSP_000310 PF00266 Aminotransferase class-V XSP_000311 PF01546 Peptidase family M20/M25/M40 XSP_000311 PF07687 Peptidase dimerisation domain XSP_000312 PF03466 LysR substrate binding domain XSP_000312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000313 PF07690 Major Facilitator Superfamily XSP_000316 PF01425 Amidase XSP_000317 PF01156 Inosine-uridine preferring nucleoside hydrolase XSP_000319 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_000320 PF00355 Rieske [2Fe-2S] domain XSP_000321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000321 PF03466 LysR substrate binding domain XSP_000322 PF01026 TatD related DNase XSP_000324 PF03466 LysR substrate binding domain XSP_000324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000325 PF07690 Major Facilitator Superfamily XSP_000329 PF02146 Sir2 family XSP_000330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_000331 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XSP_000331 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_000333 PF00551 Formyl transferase XSP_000334 PF07690 Major Facilitator Superfamily XSP_000336 PF02219 Methylenetetrahydrofolate reductase XSP_000337 PF02677 Epoxyqueuosine reductase QueH XSP_000338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000338 PF03466 LysR substrate binding domain XSP_000339 PF03358 NADPH-dependent FMN reductase XSP_000341 PF08267 Cobalamin-independent synthase, N-terminal domain XSP_000341 PF01717 Cobalamin-independent synthase, Catalytic domain XSP_000343 PF05368 NmrA-like family XSP_000344 PF01638 HxlR-like helix-turn-helix XSP_000346 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000346 PF02203 Tar ligand binding domain homologue XSP_000346 PF00672 HAMP domain XSP_000362 PF00920 Dehydratase family XSP_000365 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_000366 PF07690 Major Facilitator Superfamily XSP_000367 PF11871 Domain of unknown function (DUF3391) XSP_000367 PF01966 HD domain XSP_000371 PF00171 Aldehyde dehydrogenase family XSP_000373 PF01494 FAD binding domain XSP_000375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XSP_000375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XSP_000376 PF00230 Major intrinsic protein XSP_000377 PF01266 FAD dependent oxidoreductase XSP_000377 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XSP_000378 PF00455 DeoR C terminal sensor domain XSP_000378 PF08220 DeoR-like helix-turn-helix domain XSP_000379 PF00970 Oxidoreductase FAD-binding domain XSP_000379 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_000381 PF00355 Rieske [2Fe-2S] domain XSP_000382 PF01144 Coenzyme A transferase XSP_000383 PF01144 Coenzyme A transferase XSP_000384 PF02803 Thiolase, C-terminal domain XSP_000384 PF00108 Thiolase, N-terminal domain XSP_000385 PF00775 Dioxygenase XSP_000385 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal XSP_000387 PF00206 Lyase XSP_000387 PF10397 Adenylosuccinate lyase C-terminus XSP_000388 PF12146 Serine aminopeptidase, S33 XSP_000389 PF02627 Carboxymuconolactone decarboxylase family XSP_000391 PF09339 IclR helix-turn-helix domain XSP_000391 PF01614 Bacterial transcriptional regulator XSP_000393 PF07859 alpha/beta hydrolase fold XSP_000394 PF10677 Protein of unknown function (DUF2490) XSP_000395 PF01134 Glucose inhibited division protein A XSP_000395 PF13932 GidA associated domain XSP_000397 PF00291 Pyridoxal-phosphate dependent enzyme XSP_000402 PF13649 Methyltransferase domain XSP_000404 PF12697 Alpha/beta hydrolase family XSP_000405 PF00155 Aminotransferase class I and II XSP_000406 PF06968 Biotin and Thiamin Synthesis associated domain XSP_000406 PF04055 Radical SAM superfamily XSP_000408 PF01040 UbiA prenyltransferase family XSP_000415 PF12794 Mechanosensitive ion channel inner membrane domain 1 XSP_000415 PF12795 Mechanosensitive ion channel porin domain XSP_000415 PF00924 Mechanosensitive ion channel XSP_000416 PF00884 Sulfatase XSP_000417 PF03109 ABC1 family XSP_000418 PF05661 Protein of unknown function (DUF808) XSP_000419 PF00072 Response regulator receiver domain XSP_000419 PF00990 Diguanylate cyclase, GGDEF domain XSP_000420 PF08323 Starch synthase catalytic domain XSP_000420 PF00534 Glycosyl transferases group 1 XSP_000421 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000421 PF02806 Alpha amylase, C-terminal all-beta domain XSP_000421 PF00128 Alpha amylase, catalytic domain XSP_000422 PF00128 Alpha amylase, catalytic domain XSP_000422 PF11941 Domain of unknown function (DUF3459) XSP_000422 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000423 PF02446 4-alpha-glucanotransferase XSP_000424 PF00128 Alpha amylase, catalytic domain XSP_000426 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_000426 PF00128 Alpha amylase, catalytic domain XSP_000427 PF13460 NAD(P)H-binding XSP_000431 PF06903 VirK protein XSP_000432 PF02321 Outer membrane efflux protein XSP_000435 PF00873 AcrB/AcrD/AcrF family XSP_000437 PF00106 short chain dehydrogenase XSP_000438 PF01638 HxlR-like helix-turn-helix XSP_000440 PF00271 Helicase conserved C-terminal domain XSP_000440 PF00270 DEAD/DEAH box helicase XSP_000442 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_000442 PF00364 Biotin-requiring enzyme XSP_000442 PF02817 e3 binding domain XSP_000444 PF02780 Transketolase, C-terminal domain XSP_000444 PF02779 Transketolase, pyrimidine binding domain XSP_000445 PF00676 Dehydrogenase E1 component XSP_000447 PF03301 Tryptophan 2,3-dioxygenase XSP_000448 PF00854 POT family XSP_000450 PF01047 MarR family XSP_000451 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_000452 PF04209 homogentisate 1,2-dioxygenase XSP_000454 PF03334 Na+/H+ antiporter subunit XSP_000455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) XSP_000457 PF00361 Proton-conducting membrane transporter XSP_000458 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XSP_000459 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XSP_000459 PF00361 Proton-conducting membrane transporter XSP_000459 PF13244 Domain of unknown function (DUF4040) XSP_000459 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter XSP_000462 PF01447 Thermolysin metallopeptidase, catalytic domain XSP_000462 PF01483 Proprotein convertase P-domain XSP_000462 PF07504 Fungalysin/Thermolysin Propeptide Motif XSP_000462 PF02868 Thermolysin metallopeptidase, alpha-helical domain XSP_000463 PF00182 Chitinase class I XSP_000467 PF01259 SAICAR synthetase XSP_000468 PF00226 DnaJ domain XSP_000468 PF05099 Tellurite resistance protein TerB XSP_000470 PF00834 Ribulose-phosphate 3 epimerase family XSP_000472 PF00781 Diacylglycerol kinase catalytic domain XSP_000473 PF04715 Anthranilate synthase component I, N terminal region XSP_000473 PF00425 chorismate binding enzyme XSP_000476 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_000476 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_000476 PF14310 Fibronectin type III-like domain XSP_000478 PF02203 Tar ligand binding domain homologue XSP_000478 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000478 PF00672 HAMP domain XSP_000480 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000480 PF00107 Zinc-binding dehydrogenase XSP_000481 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000485 PF00672 HAMP domain XSP_000485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000485 PF02203 Tar ligand binding domain homologue XSP_000486 PF12833 Helix-turn-helix domain XSP_000486 PF02311 AraC-like ligand binding domain XSP_000492 PF00117 Glutamine amidotransferase class-I XSP_000494 PF00591 Glycosyl transferase family, a/b domain XSP_000494 PF02885 Glycosyl transferase family, helical bundle domain XSP_000495 PF00218 Indole-3-glycerol phosphate synthase XSP_000497 PF00027 Cyclic nucleotide-binding domain XSP_000497 PF00325 Bacterial regulatory proteins, crp family XSP_000498 PF02675 S-adenosylmethionine decarboxylase XSP_000499 PF00893 Small Multidrug Resistance protein XSP_000500 PF03232 Ubiquinone biosynthesis protein COQ7 XSP_000501 PF00572 Ribosomal protein L13 XSP_000502 PF00380 Ribosomal protein S9/S16 XSP_000505 PF00293 NUDIX domain XSP_000507 PF00210 Ferritin-like domain XSP_000508 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_000508 PF00512 His Kinase A (phospho-acceptor) domain XSP_000508 PF00072 Response regulator receiver domain XSP_000508 PF01627 Hpt domain XSP_000508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000508 PF00672 HAMP domain XSP_000509 PF00072 Response regulator receiver domain XSP_000509 PF00486 Transcriptional regulatory protein, C terminal XSP_000513 PF01521 Iron-sulphur cluster biosynthesis XSP_000515 PF09297 NADH pyrophosphatase zinc ribbon domain XSP_000515 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XSP_000515 PF00293 NUDIX domain XSP_000516 PF03186 CobD/Cbib protein XSP_000516 PF17113 Regulatory signalling modulator protein AmpE XSP_000520 PF03466 LysR substrate binding domain XSP_000520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000521 PF07690 Major Facilitator Superfamily XSP_000522 PF12805 FUSC-like inner membrane protein yccS XSP_000523 PF02844 Phosphoribosylglycinamide synthetase, N domain XSP_000523 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XSP_000523 PF02843 Phosphoribosylglycinamide synthetase, C domain XSP_000524 PF01808 AICARFT/IMPCHase bienzyme XSP_000524 PF02142 MGS-like domain XSP_000526 PF00818 Ice nucleation protein repeat XSP_000526 PF00818 Ice nucleation protein repeat XSP_000527 PF02954 Bacterial regulatory protein, Fis family XSP_000534 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_000534 PF00289 Biotin carboxylase, N-terminal domain XSP_000534 PF02785 Biotin carboxylase C-terminal domain XSP_000536 PF00364 Biotin-requiring enzyme XSP_000537 PF01220 Dehydroquinase class II XSP_000538 PF11412 Disulphide bond corrector protein DsbC XSP_000538 PF02683 Cytochrome C biogenesis protein transmembrane region XSP_000539 PF03091 CutA1 divalent ion tolerance protein XSP_000540 PF04231 Endonuclease I XSP_000541 PF00166 Chaperonin 10 Kd subunit XSP_000542 PF00118 TCP-1/cpn60 chaperonin family XSP_000543 PF00593 TonB dependent receptor XSP_000543 PF07715 TonB-dependent Receptor Plug Domain XSP_000544 PF00793 DAHP synthetase I family XSP_000545 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XSP_000545 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XSP_000549 PF16220 Domain of unknown function (DUF4880) XSP_000549 PF04773 FecR protein XSP_000550 PF00593 TonB dependent receptor XSP_000550 PF07660 Secretin and TonB N terminus short domain XSP_000550 PF07715 TonB-dependent Receptor Plug Domain XSP_000554 PF08335 GlnD PII-uridylyltransferase XSP_000554 PF03710 Glutamate-ammonia ligase adenylyltransferase XSP_000559 PF00881 Nitroreductase family XSP_000560 PF04264 YceI-like domain XSP_000561 PF04954 Siderophore-interacting protein XSP_000561 PF08021 Siderophore-interacting FAD-binding domain XSP_000563 PF16957 Malonate decarboxylase, alpha subunit, transporter XSP_000564 PF06857 Malonate decarboxylase delta subunit (MdcD) XSP_000565 PF01039 Carboxyl transferase domain XSP_000567 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG XSP_000568 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XSP_000569 PF08659 KR domain XSP_000569 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_000569 PF00550 Phosphopantetheine attachment site XSP_000569 PF00698 Acyl transferase domain XSP_000569 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_000569 PF16197 Ketoacyl-synthetase C-terminal extension XSP_000571 PF00392 Bacterial regulatory proteins, gntR family XSP_000571 PF07729 FCD domain XSP_000572 PF13419 Haloacid dehalogenase-like hydrolase XSP_000578 PF07745 Glycosyl hydrolase family 53 XSP_000579 PF17831 Pyruvate dehydrogenase E1 component middle domain XSP_000579 PF00456 Transketolase, thiamine diphosphate binding domain XSP_000593 PF04542 Sigma-70 region 2 XSP_000593 PF08281 Sigma-70, region 4 XSP_000596 PF00593 TonB dependent receptor XSP_000596 PF07715 TonB-dependent Receptor Plug Domain XSP_000604 PF07859 alpha/beta hydrolase fold XSP_000607 PF13409 Glutathione S-transferase, N-terminal domain XSP_000615 PF00326 Prolyl oligopeptidase family XSP_000615 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_000616 PF07759 Protein of unknown function (DUF1615) XSP_000617 PF00990 Diguanylate cyclase, GGDEF domain XSP_000617 PF05230 MASE2 domain XSP_000621 PF00892 EamA-like transporter family XSP_000622 PF00497 Bacterial extracellular solute-binding proteins, family 3 XSP_000624 PF00324 Amino acid permease XSP_000625 PF01544 CorA-like Mg2+ transporter protein XSP_000628 PF04616 Glycosyl hydrolases family 43 XSP_000629 PF01204 Trehalase XSP_000631 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XSP_000631 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XSP_000635 PF00990 Diguanylate cyclase, GGDEF domain XSP_000635 PF00563 EAL domain XSP_000635 PF03707 Bacterial signalling protein N terminal repeat XSP_000637 PF02203 Tar ligand binding domain homologue XSP_000637 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_000637 PF00672 HAMP domain XSP_000638 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_000638 PF00553 Cellulose binding domain XSP_000639 PF00916 Sulfate permease family XSP_000639 PF01740 STAS domain XSP_000640 PF08448 PAS fold XSP_000640 PF00990 Diguanylate cyclase, GGDEF domain XSP_000642 PF13632 Glycosyl transferase family group 2 XSP_000644 PF06580 Histidine kinase XSP_000644 PF07694 5TMR of 5TMR-LYT XSP_000645 PF00072 Response regulator receiver domain XSP_000645 PF04397 LytTr DNA-binding domain XSP_000646 PF03900 Porphobilinogen deaminase, C-terminal domain XSP_000646 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XSP_000651 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XSP_000651 PF00326 Prolyl oligopeptidase family XSP_000652 PF00155 Aminotransferase class I and II XSP_000653 PF00326 Prolyl oligopeptidase family XSP_000653 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XSP_000654 PF04304 Protein of unknown function (DUF454) XSP_000656 PF01678 Diaminopimelate epimerase XSP_000658 PF00589 Phage integrase family XSP_000658 PF02899 Phage integrase, N-terminal SAM-like domain XSP_000660 PF00227 Proteasome subunit XSP_000661 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_000661 PF07724 AAA domain (Cdc48 subfamily) XSP_000661 PF00004 ATPase family associated with various cellular activities (AAA) XSP_000663 PF13673 Acetyltransferase (GNAT) domain XSP_000664 PF13533 Biotin-lipoyl like XSP_000666 PF01209 ubiE/COQ5 methyltransferase family XSP_000667 PF00563 EAL domain XSP_000667 PF00990 Diguanylate cyclase, GGDEF domain XSP_000667 PF03707 Bacterial signalling protein N terminal repeat XSP_000668 PF01433 Peptidase family M1 domain XSP_000668 PF11838 ERAP1-like C-terminal domain XSP_000671 PF13360 PQQ-like domain XSP_000672 PF00497 Bacterial extracellular solute-binding proteins, family 3 XSP_000675 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000675 PF00107 Zinc-binding dehydrogenase XSP_000677 PF01590 GAF domain XSP_000677 PF00158 Sigma-54 interaction domain XSP_000677 PF02954 Bacterial regulatory protein, Fis family XSP_000678 PF00294 pfkB family carbohydrate kinase XSP_000680 PF04085 rod shape-determining protein MreC XSP_000682 PF00905 Penicillin binding protein transpeptidase domain XSP_000682 PF03717 Penicillin-binding Protein dimerisation domain XSP_000683 PF01098 Cell cycle protein XSP_000684 PF00295 Glycosyl hydrolases family 28 XSP_000685 PF13406 Transglycosylase SLT domain XSP_000686 PF03330 Lytic transglycolase XSP_000686 PF05036 Sporulation related domain XSP_000687 PF07943 Penicillin-binding protein 5, C-terminal domain XSP_000687 PF00768 D-alanyl-D-alanine carboxypeptidase XSP_000690 PF04359 Protein of unknown function (DUF493) XSP_000691 PF03099 Biotin/lipoate A/B protein ligase family XSP_000692 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XSP_000692 PF04055 Radical SAM superfamily XSP_000693 PF03572 Peptidase family S41 XSP_000693 PF17804 Tail specific protease N-terminal domain XSP_000693 PF11818 C-terminal domain of tail specific protease (DUF3340) XSP_000693 PF00595 PDZ domain XSP_000695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000695 PF03466 LysR substrate binding domain XSP_000697 PF00293 NUDIX domain XSP_000697 PF01467 Cytidylyltransferase-like XSP_000704 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_000704 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XSP_000705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XSP_000706 PF04972 BON domain XSP_000707 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000707 PF00512 His Kinase A (phospho-acceptor) domain XSP_000707 PF08446 PAS fold XSP_000707 PF00360 Phytochrome region XSP_000707 PF01590 GAF domain XSP_000708 PF00072 Response regulator receiver domain XSP_000709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000709 PF00512 His Kinase A (phospho-acceptor) domain XSP_000710 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XSP_000718 PF00263 Bacterial type II and III secretion system protein XSP_000718 PF03958 Bacterial type II/III secretion system short domain XSP_000719 PF00437 Type II/IV secretion system protein XSP_000720 PF00482 Type II secretion system (T2SS), protein F XSP_000721 PF08334 Type II secretion system (T2SS), protein G XSP_000721 PF07963 Prokaryotic N-terminal methylation motif XSP_000722 PF07963 Prokaryotic N-terminal methylation motif XSP_000722 PF12019 Type II transport protein GspH XSP_000723 PF07963 Prokaryotic N-terminal methylation motif XSP_000723 PF02501 Type II secretion system (T2SS), protein I XSP_000724 PF11612 Type II secretion system (T2SS), protein J XSP_000724 PF07963 Prokaryotic N-terminal methylation motif XSP_000725 PF03934 Type II secretion system (T2SS), protein K XSP_000730 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_000730 PF00703 Glycosyl hydrolases family 2 XSP_000730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_000730 PF16355 Domain of unknown function (DUF4982) XSP_000730 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_000733 PF00392 Bacterial regulatory proteins, gntR family XSP_000733 PF07702 UTRA domain XSP_000734 PF07690 Major Facilitator Superfamily XSP_000735 PF00356 Bacterial regulatory proteins, lacI family XSP_000736 PF01380 SIS domain XSP_000737 PF01979 Amidohydrolase family XSP_000740 PF01966 HD domain XSP_000740 PF12627 Probable RNA and SrmB- binding site of polymerase A XSP_000740 PF01743 Poly A polymerase head domain XSP_000741 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XSP_000741 PF01464 Transglycosylase SLT domain XSP_000742 PF00593 TonB dependent receptor XSP_000742 PF07715 TonB-dependent Receptor Plug Domain XSP_000743 PF00732 GMC oxidoreductase XSP_000743 PF05199 GMC oxidoreductase XSP_000744 PF00171 Aldehyde dehydrogenase family XSP_000745 PF02028 BCCT, betaine/carnitine/choline family transporter XSP_000747 PF01323 DSBA-like thioredoxin domain XSP_000749 PF00034 Cytochrome c XSP_000750 PF01926 50S ribosome-binding GTPase XSP_000751 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain XSP_000751 PF00753 Metallo-beta-lactamase superfamily XSP_000751 PF10996 Beta-Casp domain XSP_000752 PF12833 Helix-turn-helix domain XSP_000752 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term XSP_000753 PF04107 Glutamate-cysteine ligase family 2(GCS2) XSP_000754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000754 PF00512 His Kinase A (phospho-acceptor) domain XSP_000754 PF00672 HAMP domain XSP_000755 PF00072 Response regulator receiver domain XSP_000755 PF00486 Transcriptional regulatory protein, C terminal XSP_000758 PF13581 Histidine kinase-like ATPase domain XSP_000758 PF07536 HWE histidine kinase XSP_000758 PF13426 PAS domain XSP_000759 PF02583 Metal-sensitive transcriptional repressor XSP_000760 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000760 PF00107 Zinc-binding dehydrogenase XSP_000761 PF04828 Glutathione-dependent formaldehyde-activating enzyme XSP_000762 PF00756 Putative esterase XSP_000763 PF00155 Aminotransferase class I and II XSP_000763 PF00392 Bacterial regulatory proteins, gntR family XSP_000764 PF00892 EamA-like transporter family XSP_000768 PF03814 Potassium-transporting ATPase A subunit XSP_000770 PF02669 K+-transporting ATPase, c chain XSP_000771 PF13492 GAF domain XSP_000771 PF13493 Domain of unknown function (DUF4118) XSP_000771 PF02702 Osmosensitive K+ channel His kinase sensor domain XSP_000771 PF00512 His Kinase A (phospho-acceptor) domain XSP_000771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000772 PF00486 Transcriptional regulatory protein, C terminal XSP_000772 PF00072 Response regulator receiver domain XSP_000773 PF01565 FAD binding domain XSP_000773 PF02913 FAD linked oxidases, C-terminal domain XSP_000774 PF04307 LexA-binding, inner membrane-associated putative hydrolase XSP_000775 PF02021 Uncharacterised protein family UPF0102 XSP_000777 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_000780 PF02381 MraZ protein, putative antitoxin-like XSP_000781 PF01795 MraW methylase family XSP_000782 PF04999 Cell division protein FtsL XSP_000783 PF03717 Penicillin-binding Protein dimerisation domain XSP_000783 PF00905 Penicillin binding protein transpeptidase domain XSP_000784 PF08245 Mur ligase middle domain XSP_000784 PF02875 Mur ligase family, glutamate ligase domain XSP_000784 PF01225 Mur ligase family, catalytic domain XSP_000785 PF01225 Mur ligase family, catalytic domain XSP_000785 PF08245 Mur ligase middle domain XSP_000785 PF02875 Mur ligase family, glutamate ligase domain XSP_000786 PF00953 Glycosyl transferase family 4 XSP_000787 PF01098 Cell cycle protein XSP_000788 PF04101 Glycosyltransferase family 28 C-terminal domain XSP_000788 PF03033 Glycosyltransferase family 28 N-terminal domain XSP_000789 PF02875 Mur ligase family, glutamate ligase domain XSP_000789 PF08245 Mur ligase middle domain XSP_000789 PF01225 Mur ligase family, catalytic domain XSP_000790 PF07478 D-ala D-ala ligase C-terminus XSP_000790 PF01820 D-ala D-ala ligase N-terminus XSP_000791 PF08478 POTRA domain, FtsQ-type XSP_000791 PF03799 Cell division protein FtsQ XSP_000792 PF02491 SHS2 domain inserted in FTSA XSP_000793 PF00091 Tubulin/FtsZ family, GTPase domain XSP_000793 PF12327 FtsZ family, C-terminal domain XSP_000794 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XSP_000796 PF01476 LysM domain XSP_000796 PF01551 Peptidase family M23 XSP_000796 PF08525 Opacity-associated protein A N-terminal motif XSP_000797 PF01043 SecA preprotein cross-linking domain XSP_000797 PF07517 SecA DEAD-like domain XSP_000797 PF02810 SEC-C motif XSP_000797 PF07516 SecA Wing and Scaffold domain XSP_000799 PF00293 NUDIX domain XSP_000802 PF02219 Methylenetetrahydrofolate reductase XSP_000804 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000804 PF16197 Ketoacyl-synthetase C-terminal extension XSP_000804 PF14765 Polyketide synthase dehydratase XSP_000804 PF00550 Phosphopantetheine attachment site XSP_000804 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_000804 PF00107 Zinc-binding dehydrogenase XSP_000804 PF08659 KR domain XSP_000804 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_000804 PF00698 Acyl transferase domain XSP_000805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000809 PF00128 Alpha amylase, catalytic domain XSP_000812 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XSP_000812 PF05221 S-adenosyl-L-homocysteine hydrolase XSP_000814 PF00311 Phosphoenolpyruvate carboxylase XSP_000818 PF00328 Histidine phosphatase superfamily (branch 2) XSP_000819 PF00438 S-adenosylmethionine synthetase, N-terminal domain XSP_000819 PF02773 S-adenosylmethionine synthetase, C-terminal domain XSP_000819 PF02772 S-adenosylmethionine synthetase, central domain XSP_000823 PF01207 Dihydrouridine synthase (Dus) XSP_000824 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XSP_000824 PF00294 pfkB family carbohydrate kinase XSP_000825 PF01773 Na+ dependent nucleoside transporter N-terminus XSP_000825 PF07670 Nucleoside recognition XSP_000825 PF07662 Na+ dependent nucleoside transporter C-terminus XSP_000826 PF00248 Aldo/keto reductase family XSP_000828 PF07715 TonB-dependent Receptor Plug Domain XSP_000828 PF00593 TonB dependent receptor XSP_000832 PF00528 Binding-protein-dependent transport system inner membrane component XSP_000833 PF00005 ABC transporter XSP_000835 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XSP_000837 PF00005 ABC transporter XSP_000838 PF13472 GDSL-like Lipase/Acylhydrolase family XSP_000839 PF00072 Response regulator receiver domain XSP_000839 PF00486 Transcriptional regulatory protein, C terminal XSP_000840 PF00512 His Kinase A (phospho-acceptor) domain XSP_000840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000840 PF08521 Two-component sensor kinase N-terminal XSP_000842 PF01219 Prokaryotic diacylglycerol kinase XSP_000846 PF01790 Prolipoprotein diacylglyceryl transferase XSP_000847 PF00303 Thymidylate synthase XSP_000848 PF00186 Dihydrofolate reductase XSP_000849 PF00149 Calcineurin-like phosphoesterase XSP_000850 PF04379 ApaG domain XSP_000851 PF00398 Ribosomal RNA adenine dimethylase XSP_000852 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XSP_000853 PF09312 SurA N-terminal domain XSP_000853 PF00639 PPIC-type PPIASE domain XSP_000854 PF03968 OstA-like protein XSP_000854 PF04453 LPS transport system D XSP_000855 PF00850 Histone deacetylase domain XSP_000856 PF01923 Cobalamin adenosyltransferase XSP_000858 PF01494 FAD binding domain XSP_000859 PF01494 FAD binding domain XSP_000863 PF07729 FCD domain XSP_000863 PF00392 Bacterial regulatory proteins, gntR family XSP_000864 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_000865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_000865 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit XSP_000866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000866 PF03466 LysR substrate binding domain XSP_000867 PF13193 AMP-binding enzyme C-terminal domain XSP_000867 PF00501 AMP-binding enzyme XSP_000868 PF00171 Aldehyde dehydrogenase family XSP_000869 PF00378 Enoyl-CoA hydratase/isomerase XSP_000873 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_000874 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_000874 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XSP_000875 PF01728 FtsJ-like methyltransferase XSP_000875 PF18125 RlmM ferredoxin-like domain XSP_000879 PF00892 EamA-like transporter family XSP_000880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XSP_000880 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_000883 PF00072 Response regulator receiver domain XSP_000883 PF00990 Diguanylate cyclase, GGDEF domain XSP_000884 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_000884 PF00072 Response regulator receiver domain XSP_000884 PF01627 Hpt domain XSP_000884 PF00672 HAMP domain XSP_000884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_000884 PF00512 His Kinase A (phospho-acceptor) domain XSP_000885 PF00072 Response regulator receiver domain XSP_000885 PF00196 Bacterial regulatory proteins, luxR family XSP_000887 PF01625 Peptide methionine sulfoxide reductase XSP_000889 PF00923 Transaldolase/Fructose-6-phosphate aldolase XSP_000890 PF14760 Rnk N-terminus XSP_000890 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_000891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_000891 PF03466 LysR substrate binding domain XSP_000892 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000892 PF13192 Thioredoxin domain XSP_000893 PF00578 AhpC/TSA family XSP_000893 PF10417 C-terminal domain of 1-Cys peroxiredoxin XSP_000894 PF05175 Methyltransferase small domain XSP_000894 PF17827 PrmC N-terminal domain XSP_000895 PF00561 alpha/beta hydrolase fold XSP_000897 PF00293 NUDIX domain XSP_000898 PF01612 3'-5' exonuclease XSP_000898 PF01367 5'-3' exonuclease, C-terminal SAM fold XSP_000898 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XSP_000898 PF00476 DNA polymerase family A XSP_000904 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XSP_000904 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XSP_000904 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XSP_000908 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XSP_000909 PF02233 NAD(P) transhydrogenase beta subunit XSP_000913 PF01063 Amino-transferase class IV XSP_000914 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000914 PF00082 Subtilase family XSP_000915 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000915 PF00082 Subtilase family XSP_000916 PF00082 Subtilase family XSP_000916 PF04151 Bacterial pre-peptidase C-terminal domain XSP_000917 PF04073 Aminoacyl-tRNA editing domain XSP_000920 PF03358 NADPH-dependent FMN reductase XSP_000921 PF03631 Virulence factor BrkB XSP_000922 PF08534 Redoxin XSP_000923 PF00708 Acylphosphatase XSP_000925 PF03976 Polyphosphate kinase 2 (PPK2) XSP_000926 PF00994 Probable molybdopterin binding domain XSP_000928 PF03462 PCRF domain XSP_000928 PF00472 RF-1 domain XSP_000929 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XSP_000929 PF01488 Shikimate / quinate 5-dehydrogenase XSP_000929 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XSP_000931 PF03550 Outer membrane lipoprotein LolB XSP_000932 PF00288 GHMP kinases N terminal domain XSP_000932 PF08544 GHMP kinases C terminal XSP_000934 PF14572 Phosphoribosyl synthetase-associated domain XSP_000934 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XSP_000935 PF01386 Ribosomal L25p family XSP_000935 PF14693 Ribosomal protein TL5, C-terminal domain XSP_000936 PF01195 Peptidyl-tRNA hydrolase XSP_000937 PF06071 Protein of unknown function (DUF933) XSP_000937 PF01926 50S ribosome-binding GTPase XSP_000941 PF00009 Elongation factor Tu GTP binding domain XSP_000941 PF03144 Elongation factor Tu domain 2 XSP_000941 PF03143 Elongation factor Tu C-terminal domain XSP_000943 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XSP_000944 PF00467 KOW motif XSP_000944 PF02357 Transcription termination factor nusG XSP_000945 PF00298 Ribosomal protein L11, RNA binding domain XSP_000945 PF03946 Ribosomal protein L11, N-terminal domain XSP_000946 PF00687 Ribosomal protein L1p/L10e family XSP_000947 PF00466 Ribosomal protein L10 XSP_000948 PF00542 Ribosomal protein L7/L12 C-terminal domain XSP_000948 PF16320 Ribosomal protein L7/L12 dimerisation domain XSP_000949 PF10385 RNA polymerase beta subunit external 1 domain XSP_000949 PF04565 RNA polymerase Rpb2, domain 3 XSP_000949 PF04561 RNA polymerase Rpb2, domain 2 XSP_000949 PF00562 RNA polymerase Rpb2, domain 6 XSP_000949 PF04560 RNA polymerase Rpb2, domain 7 XSP_000949 PF04563 RNA polymerase beta subunit XSP_000950 PF00623 RNA polymerase Rpb1, domain 2 XSP_000950 PF05000 RNA polymerase Rpb1, domain 4 XSP_000950 PF04983 RNA polymerase Rpb1, domain 3 XSP_000950 PF04997 RNA polymerase Rpb1, domain 1 XSP_000950 PF04998 RNA polymerase Rpb1, domain 5 XSP_000951 PF00164 Ribosomal protein S12/S23 XSP_000952 PF00177 Ribosomal protein S7p/S5e XSP_000953 PF00679 Elongation factor G C-terminus XSP_000953 PF14492 Elongation Factor G, domain II XSP_000953 PF03144 Elongation factor Tu domain 2 XSP_000953 PF00009 Elongation factor Tu GTP binding domain XSP_000953 PF03764 Elongation factor G, domain IV XSP_000954 PF00009 Elongation factor Tu GTP binding domain XSP_000954 PF03144 Elongation factor Tu domain 2 XSP_000954 PF03143 Elongation factor Tu C-terminal domain XSP_000955 PF00338 Ribosomal protein S10p/S20e XSP_000956 PF00297 Ribosomal protein L3 XSP_000957 PF00573 Ribosomal protein L4/L1 family XSP_000958 PF00276 Ribosomal protein L23 XSP_000959 PF00181 Ribosomal Proteins L2, RNA binding domain XSP_000959 PF03947 Ribosomal Proteins L2, C-terminal domain XSP_000960 PF00203 Ribosomal protein S19 XSP_000961 PF00237 Ribosomal protein L22p/L17e XSP_000962 PF07650 KH domain XSP_000962 PF00189 Ribosomal protein S3, C-terminal domain XSP_000963 PF00252 Ribosomal protein L16p/L10e XSP_000964 PF00831 Ribosomal L29 protein XSP_000965 PF00366 Ribosomal protein S17 XSP_000966 PF00238 Ribosomal protein L14p/L23e XSP_000967 PF00467 KOW motif XSP_000967 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XSP_000968 PF00281 Ribosomal protein L5 XSP_000968 PF00673 ribosomal L5P family C-terminus XSP_000969 PF00253 Ribosomal protein S14p/S29e XSP_000970 PF00410 Ribosomal protein S8 XSP_000971 PF00347 Ribosomal protein L6 XSP_000972 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XSP_000973 PF03719 Ribosomal protein S5, C-terminal domain XSP_000973 PF00333 Ribosomal protein S5, N-terminal domain XSP_000974 PF00327 Ribosomal protein L30p/L7e XSP_000975 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XSP_000976 PF00344 SecY translocase XSP_000977 PF00416 Ribosomal protein S13/S18 XSP_000978 PF00411 Ribosomal protein S11 XSP_000979 PF00163 Ribosomal protein S4/S9 N-terminal domain XSP_000979 PF01479 S4 domain XSP_000980 PF01000 RNA polymerase Rpb3/RpoA insert domain XSP_000980 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XSP_000980 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XSP_000981 PF01196 Ribosomal protein L17 XSP_000982 PF02600 Disulfide bond formation protein DsbB XSP_000983 PF01474 Class-II DAHP synthetase family XSP_000985 PF01425 Amidase XSP_000988 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XSP_000989 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XSP_000989 PF00056 lactate/malate dehydrogenase, NAD binding domain XSP_000990 PF02798 Glutathione S-transferase, N-terminal domain XSP_000990 PF00043 Glutathione S-transferase, C-terminal domain XSP_000993 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_000993 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_000994 PF08240 Alcohol dehydrogenase GroES-like domain XSP_000994 PF00107 Zinc-binding dehydrogenase XSP_000995 PF00691 OmpA family XSP_000995 PF00223 Photosystem I psaA/psaB protein XSP_000997 PF00849 RNA pseudouridylate synthase XSP_000999 PF00155 Aminotransferase class I and II XSP_001001 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001002 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001003 PF17850 CysA C-terminal regulatory domain XSP_001003 PF12857 TOBE-like domain XSP_001003 PF00005 ABC transporter XSP_001005 PF08240 Alcohol dehydrogenase GroES-like domain XSP_001005 PF00107 Zinc-binding dehydrogenase XSP_001007 PF04185 Phosphoesterase family XSP_001007 PF05506 Domain of unknown function (DUF756) XSP_001008 PF00300 Histidine phosphatase superfamily (branch 1) XSP_001010 PF08245 Mur ligase middle domain XSP_001010 PF02875 Mur ligase family, glutamate ligase domain XSP_001013 PF00156 Phosphoribosyl transferase domain XSP_001014 PF04305 Protein of unknown function (DUF455) XSP_001017 PF00149 Calcineurin-like phosphoesterase XSP_001018 PF01569 PAP2 superfamily XSP_001019 PF00534 Glycosyl transferases group 1 XSP_001019 PF13439 Glycosyltransferase Family 4 XSP_001020 PF02541 Ppx/GppA phosphatase family XSP_001021 PF02503 Polyphosphate kinase middle domain XSP_001021 PF13089 Polyphosphate kinase N-terminal domain XSP_001021 PF17941 Polyphosphate kinase C-terminal domain 1 XSP_001021 PF13090 Polyphosphate kinase C-terminal domain 2 XSP_001022 PF11808 Phosphate regulon sensor protein PhoR XSP_001022 PF00989 PAS fold XSP_001022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001022 PF00512 His Kinase A (phospho-acceptor) domain XSP_001023 PF00486 Transcriptional regulatory protein, C terminal XSP_001023 PF00072 Response regulator receiver domain XSP_001024 PF01435 Peptidase family M48 XSP_001024 PF13181 Tetratricopeptide repeat XSP_001025 PF00462 Glutaredoxin XSP_001027 PF18324 Hypothetical protein TT1725 XSP_001027 PF00180 Isocitrate/isopropylmalate dehydrogenase XSP_001034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001034 PF00512 His Kinase A (phospho-acceptor) domain XSP_001034 PF00989 PAS fold XSP_001036 PF05698 Bacterial trigger factor protein (TF) C-terminus XSP_001036 PF05697 Bacterial trigger factor protein (TF) XSP_001037 PF00574 Clp protease XSP_001038 PF06689 ClpX C4-type zinc finger XSP_001038 PF07724 AAA domain (Cdc48 subfamily) XSP_001038 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_001039 PF05362 Lon protease (S16) C-terminal proteolytic domain XSP_001039 PF02190 ATP-dependent protease La (LON) substrate-binding domain XSP_001039 PF00004 ATPase family associated with various cellular activities (AAA) XSP_001040 PF00216 Bacterial DNA-binding protein XSP_001045 PF05257 CHAP domain XSP_001045 PF01476 LysM domain XSP_001046 PF16123 Hydroxyacylglutathione hydrolase C-terminus XSP_001046 PF00753 Metallo-beta-lactamase superfamily XSP_001048 PF00075 RNase H XSP_001049 PF00929 Exonuclease XSP_001053 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XSP_001055 PF00753 Metallo-beta-lactamase superfamily XSP_001055 PF12706 Beta-lactamase superfamily domain XSP_001056 PF06463 Molybdenum Cofactor Synthesis C XSP_001056 PF04055 Radical SAM superfamily XSP_001057 PF01967 MoaC family XSP_001058 PF02597 ThiS family XSP_001059 PF02391 MoaE protein XSP_001080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001080 PF03466 LysR substrate binding domain XSP_001091 PF12169 DNA polymerase III subunits gamma and tau domain III XSP_001091 PF12170 DNA polymerase III tau subunit V interacting with alpha XSP_001091 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XSP_001092 PF02575 YbaB/EbfC DNA-binding family XSP_001093 PF02132 RecR protein XSP_001093 PF13662 Toprim domain XSP_001094 PF01230 HIT domain XSP_001096 PF11992 Domain of unknown function (DUF3488) XSP_001096 PF13559 Domain of unknown function (DUF4129) XSP_001096 PF01841 Transglutaminase-like superfamily XSP_001098 PF07726 ATPase family associated with various cellular activities (AAA) XSP_001098 PF17863 AAA lid domain XSP_001102 PF02545 Maf-like protein XSP_001103 PF02620 Large ribosomal RNA subunit accumulation protein YceD XSP_001104 PF01783 Ribosomal L32p protein family XSP_001105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_001105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_001107 PF00698 Acyl transferase domain XSP_001109 PF00550 Phosphopantetheine attachment site XSP_001110 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_001110 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_001111 PF00425 chorismate binding enzyme XSP_001111 PF04715 Anthranilate synthase component I, N terminal region XSP_001112 PF02618 YceG-like family XSP_001113 PF09115 DNA polymerase III, delta subunit, C terminal XSP_001117 PF02954 Bacterial regulatory protein, Fis family XSP_001117 PF06506 Propionate catabolism activator XSP_001117 PF00158 Sigma-54 interaction domain XSP_001119 PF00285 Citrate synthase, C-terminal domain XSP_001121 PF00694 Aconitase C-terminal domain XSP_001121 PF00330 Aconitase family (aconitate hydratase) XSP_001122 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XSP_001124 PF04303 PrpF protein XSP_001125 PF00593 TonB dependent receptor XSP_001125 PF07715 TonB-dependent Receptor Plug Domain XSP_001127 PF00207 Alpha-2-macroglobulin family XSP_001127 PF07703 Alpha-2-macroglobulin bait region domain XSP_001127 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XSP_001127 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XSP_001127 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XSP_001127 PF17962 Bacterial macroglobulin domain 6 XSP_001127 PF01835 MG2 domain XSP_001127 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XSP_001131 PF00905 Penicillin binding protein transpeptidase domain XSP_001131 PF00912 Transglycosylase XSP_001131 PF06832 Penicillin-Binding Protein C-terminus Family XSP_001133 PF08534 Redoxin XSP_001135 PF00226 DnaJ domain XSP_001135 PF01556 DnaJ C terminal domain XSP_001136 PF00072 Response regulator receiver domain XSP_001137 PF01145 SPFH domain / Band 7 family XSP_001137 PF12221 Bacterial membrane protein N terminal XSP_001138 PF01145 SPFH domain / Band 7 family XSP_001141 PF00709 Adenylosuccinate synthetase XSP_001145 PF00440 Bacterial regulatory proteins, tetR family XSP_001150 PF10137 Predicted nucleotide-binding protein containing TIR-like domain XSP_001157 PF13977 BetI-type transcriptional repressor, C-terminal XSP_001157 PF00440 Bacterial regulatory proteins, tetR family XSP_001158 PF00300 Histidine phosphatase superfamily (branch 1) XSP_001158 PF13456 Reverse transcriptase-like XSP_001159 PF01256 Carbohydrate kinase XSP_001163 PF07971 Glycosyl hydrolase family 92 XSP_001163 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_001165 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_001168 PF17755 UvrA DNA-binding domain XSP_001169 PF14310 Fibronectin type III-like domain XSP_001169 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001169 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001170 PF04239 Protein of unknown function (DUF421) XSP_001173 PF07690 Major Facilitator Superfamily XSP_001174 PF07940 Heparinase II/III-like protein XSP_001174 PF05426 Alginate lyase XSP_001175 PF14592 Chondroitinase B XSP_001177 PF07729 FCD domain XSP_001177 PF00392 Bacterial regulatory proteins, gntR family XSP_001178 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XSP_001178 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XSP_001179 PF00941 FAD binding domain in molybdopterin dehydrogenase XSP_001179 PF03450 CO dehydrogenase flavoprotein C-terminal domain XSP_001180 PF01799 [2Fe-2S] binding domain XSP_001180 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_001186 PF01726 LexA DNA binding domain XSP_001186 PF00717 Peptidase S24-like XSP_001189 PF02811 PHP domain XSP_001189 PF14579 Helix-hairpin-helix motif XSP_001189 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XSP_001189 PF07733 Bacterial DNA polymerase III alpha NTPase domain XSP_001190 PF03169 OPT oligopeptide transporter protein XSP_001192 PF01011 PQQ enzyme repeat XSP_001193 PF04966 Carbohydrate-selective porin, OprB family XSP_001194 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_001194 PF00326 Prolyl oligopeptidase family XSP_001194 PF07676 WD40-like Beta Propeller Repeat XSP_001197 PF12833 Helix-turn-helix domain XSP_001197 PF02311 AraC-like ligand binding domain XSP_001198 PF06628 Catalase-related immune-responsive XSP_001198 PF18011 C-terminal domain found in long catalases XSP_001198 PF00199 Catalase XSP_001199 PF00248 Aldo/keto reductase family XSP_001200 PF00135 Carboxylesterase family XSP_001201 PF02347 Glycine cleavage system P-protein XSP_001202 PF07690 Major Facilitator Superfamily XSP_001208 PF00884 Sulfatase XSP_001208 PF08019 Phosphoethanolamine transferase EptA/EptB XSP_001210 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XSP_001211 PF00072 Response regulator receiver domain XSP_001211 PF00486 Transcriptional regulatory protein, C terminal XSP_001212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001212 PF00512 His Kinase A (phospho-acceptor) domain XSP_001215 PF03776 Septum formation topological specificity factor MinE XSP_001216 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XSP_001217 PF05209 Septum formation inhibitor MinC, N-terminal domain XSP_001217 PF03775 Septum formation inhibitor MinC, C-terminal domain XSP_001219 PF07730 Histidine kinase XSP_001220 PF00196 Bacterial regulatory proteins, luxR family XSP_001220 PF00072 Response regulator receiver domain XSP_001223 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_001229 PF02222 ATP-grasp domain XSP_001229 PF01370 NAD dependent epimerase/dehydratase family XSP_001231 PF04377 Arginine-tRNA-protein transferase, C terminus XSP_001231 PF04376 Arginine-tRNA-protein transferase, N terminus XSP_001233 PF04542 Sigma-70 region 2 XSP_001233 PF08281 Sigma-70, region 4 XSP_001236 PF00378 Enoyl-CoA hydratase/isomerase XSP_001239 PF17755 UvrA DNA-binding domain XSP_001239 PF17760 UvrA interaction domain XSP_001239 PF00005 ABC transporter XSP_001240 PF00829 Ribosomal prokaryotic L21 protein XSP_001241 PF01016 Ribosomal L27 protein XSP_001242 PF01018 GTP1/OBG XSP_001242 PF01926 50S ribosome-binding GTPase XSP_001243 PF01649 Ribosomal protein S20 XSP_001244 PF03023 Lipid II flippase MurJ XSP_001245 PF06574 FAD synthetase XSP_001245 PF01687 Riboflavin kinase XSP_001246 PF06827 Zinc finger found in FPG and IleRS XSP_001246 PF00133 tRNA synthetases class I (I, L, M and V) XSP_001246 PF08264 Anticodon-binding domain of tRNA XSP_001247 PF01252 Signal peptidase (SPase) II XSP_001248 PF02401 LytB protein XSP_001250 PF06481 COX Aromatic Rich Motif XSP_001250 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XSP_001251 PF00115 Cytochrome C and Quinol oxidase polypeptide I XSP_001252 PF00510 Cytochrome c oxidase subunit III XSP_001253 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XSP_001255 PF18073 Rubredoxin metal binding domain XSP_001256 PF05656 Protein of unknown function (DUF805) XSP_001258 PF12833 Helix-turn-helix domain XSP_001259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001259 PF00183 Hsp90 protein XSP_001261 PF08678 Rsbr N terminal XSP_001261 PF01740 STAS domain XSP_001262 PF01740 STAS domain XSP_001263 PF13581 Histidine kinase-like ATPase domain XSP_001265 PF01627 Hpt domain XSP_001265 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_001265 PF00672 HAMP domain XSP_001265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001265 PF00512 His Kinase A (phospho-acceptor) domain XSP_001265 PF00072 Response regulator receiver domain XSP_001266 PF00072 Response regulator receiver domain XSP_001266 PF13188 PAS domain XSP_001266 PF08448 PAS fold XSP_001266 PF00512 His Kinase A (phospho-acceptor) domain XSP_001266 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001267 PF07715 TonB-dependent Receptor Plug Domain XSP_001267 PF00593 TonB dependent receptor XSP_001268 PF00085 Thioredoxin XSP_001269 PF07237 Protein of unknown function (DUF1428) XSP_001270 PF00512 His Kinase A (phospho-acceptor) domain XSP_001270 PF02702 Osmosensitive K+ channel His kinase sensor domain XSP_001270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001270 PF13493 Domain of unknown function (DUF4118) XSP_001270 PF13492 GAF domain XSP_001271 PF01339 CheB methylesterase XSP_001272 PF01739 CheR methyltransferase, SAM binding domain XSP_001272 PF03705 CheR methyltransferase, all-alpha domain XSP_001273 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_001273 PF01627 Hpt domain XSP_001273 PF00512 His Kinase A (phospho-acceptor) domain XSP_001273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001273 PF00672 HAMP domain XSP_001273 PF00072 Response regulator receiver domain XSP_001274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001274 PF13426 PAS domain XSP_001274 PF00072 Response regulator receiver domain XSP_001275 PF00072 Response regulator receiver domain XSP_001278 PF03466 LysR substrate binding domain XSP_001278 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001279 PF06964 Alpha-L-arabinofuranosidase C-terminal domain XSP_001280 PF01263 Aldose 1-epimerase XSP_001281 PF01578 Cytochrome C assembly protein XSP_001282 PF00448 SRP54-type protein, GTPase domain XSP_001282 PF02978 Signal peptide binding domain XSP_001282 PF02881 SRP54-type protein, helical bundle domain XSP_001283 PF03060 Nitronate monooxygenase XSP_001285 PF00886 Ribosomal protein S16 XSP_001286 PF01782 RimM N-terminal domain XSP_001286 PF05239 PRC-barrel domain XSP_001287 PF01746 tRNA (Guanine-1)-methyltransferase XSP_001288 PF01245 Ribosomal protein L19 XSP_001289 PF01554 MatE XSP_001290 PF01479 S4 domain XSP_001291 PF00141 Peroxidase XSP_001293 PF05190 MutS family domain IV XSP_001293 PF01624 MutS domain I XSP_001293 PF05192 MutS domain III XSP_001293 PF00488 MutS domain V XSP_001293 PF05188 MutS domain II XSP_001317 PF04002 RadC-like JAB domain XSP_001326 PF08359 YsiA-like protein, C-terminal region XSP_001326 PF00440 Bacterial regulatory proteins, tetR family XSP_001328 PF02743 Cache domain XSP_001328 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001328 PF00672 HAMP domain XSP_001331 PF04397 LytTr DNA-binding domain XSP_001331 PF00072 Response regulator receiver domain XSP_001333 PF03466 LysR substrate binding domain XSP_001333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001334 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_001334 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_001334 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_001337 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_001337 PF00703 Glycosyl hydrolases family 2 XSP_001337 PF16355 Domain of unknown function (DUF4982) XSP_001337 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_001337 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_001338 PF07745 Glycosyl hydrolase family 53 XSP_001340 PF01381 Helix-turn-helix XSP_001340 PF06114 IrrE N-terminal-like domain XSP_001340 PF09856 Predicted transcriptional regulator (DUF2083) XSP_001341 PF00171 Aldehyde dehydrogenase family XSP_001342 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001342 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001342 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001343 PF00378 Enoyl-CoA hydratase/isomerase XSP_001344 PF00378 Enoyl-CoA hydratase/isomerase XSP_001344 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_001344 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_001345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XSP_001345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_001346 PF01545 Cation efflux family XSP_001350 PF13181 Tetratricopeptide repeat XSP_001351 PF00593 TonB dependent receptor XSP_001351 PF07715 TonB-dependent Receptor Plug Domain XSP_001352 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_001352 PF00378 Enoyl-CoA hydratase/isomerase XSP_001352 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_001353 PF08281 Sigma-70, region 4 XSP_001353 PF04542 Sigma-70 region 2 XSP_001355 PF13180 PDZ domain XSP_001356 PF06421 GTP-binding protein LepA C-terminus XSP_001356 PF00679 Elongation factor G C-terminus XSP_001356 PF03144 Elongation factor Tu domain 2 XSP_001356 PF00009 Elongation factor Tu GTP binding domain XSP_001357 PF10502 Signal peptidase, peptidase S26 XSP_001359 PF00035 Double-stranded RNA binding motif XSP_001359 PF14622 Ribonuclease-III-like XSP_001360 PF01926 50S ribosome-binding GTPase XSP_001360 PF07650 KH domain XSP_001361 PF11967 Recombination protein O N terminal XSP_001361 PF02565 Recombination protein O C terminal XSP_001362 PF00072 Response regulator receiver domain XSP_001362 PF00486 Transcriptional regulatory protein, C terminal XSP_001363 PF05958 tRNA (Uracil-5-)-methyltransferase XSP_001364 PF01928 CYTH domain XSP_001365 PF01323 DSBA-like thioredoxin domain XSP_001366 PF01593 Flavin containing amine oxidoreductase XSP_001367 PF04244 Deoxyribodipyrimidine photo-lyase-related protein XSP_001368 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001370 PF01048 Phosphorylase superfamily XSP_001371 PF00313 'Cold-shock' DNA-binding domain XSP_001372 PF01494 FAD binding domain XSP_001374 PF00270 DEAD/DEAH box helicase XSP_001374 PF08494 DEAD/H associated XSP_001374 PF00271 Helicase conserved C-terminal domain XSP_001375 PF01068 ATP dependent DNA ligase domain XSP_001375 PF04679 ATP dependent DNA ligase C terminal region XSP_001375 PF04675 DNA ligase N terminus XSP_001377 PF04679 ATP dependent DNA ligase C terminal region XSP_001377 PF01068 ATP dependent DNA ligase domain XSP_001377 PF04675 DNA ligase N terminus XSP_001380 PF00072 Response regulator receiver domain XSP_001380 PF00990 Diguanylate cyclase, GGDEF domain XSP_001384 PF02803 Thiolase, C-terminal domain XSP_001384 PF00108 Thiolase, N-terminal domain XSP_001385 PF00082 Subtilase family XSP_001385 PF03797 Autotransporter beta-domain XSP_001385 PF12951 Passenger-associated-transport-repeat XSP_001386 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XSP_001386 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XSP_001388 PF01863 Protein of unknown function DUF45 XSP_001389 PF07043 Protein of unknown function (DUF1328) XSP_001391 PF01258 Prokaryotic dksA/traR C4-type zinc finger XSP_001395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001397 PF08274 PhnA Zinc-Ribbon XSP_001397 PF03831 PhnA domain XSP_001401 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_001402 PF07690 Major Facilitator Superfamily XSP_001408 PF09924 Uncharacterised conserved protein (DUF2156) XSP_001408 PF03706 Lysylphosphatidylglycerol synthase TM region XSP_001410 PF01042 Endoribonuclease L-PSP XSP_001419 PF04545 Sigma-70, region 4 XSP_001419 PF04542 Sigma-70 region 2 XSP_001422 PF04060 Putative Fe-S cluster XSP_001424 PF01588 Putative tRNA binding domain XSP_001424 PF09334 tRNA synthetases class I (M) XSP_001427 PF13732 Domain of unknown function (DUF4162) XSP_001427 PF00005 ABC transporter XSP_001428 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_001429 PF00324 Amino acid permease XSP_001430 PF02574 Homocysteine S-methyltransferase XSP_001433 PF01810 LysE type translocator XSP_001434 PF02592 Putative vitamin uptake transporter XSP_001441 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XSP_001442 PF02811 PHP domain XSP_001442 PF01336 OB-fold nucleic acid binding domain XSP_001442 PF14579 Helix-hairpin-helix motif XSP_001442 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XSP_001442 PF07733 Bacterial DNA polymerase III alpha NTPase domain XSP_001443 PF01351 Ribonuclease HII XSP_001444 PF02684 Lipid-A-disaccharide synthetase XSP_001445 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XSP_001445 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001446 PF07977 FabA-like domain XSP_001447 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XSP_001447 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001449 PF01103 Surface antigen XSP_001449 PF07244 Surface antigen variable number repeat XSP_001450 PF17820 PDZ domain XSP_001450 PF02163 Peptidase family M50 XSP_001451 PF13288 DXP reductoisomerase C-terminal domain XSP_001451 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XSP_001451 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XSP_001453 PF01255 Putative undecaprenyl diphosphate synthase XSP_001454 PF01765 Ribosome recycling factor XSP_001455 PF00696 Amino acid kinase family XSP_001456 PF00990 Diguanylate cyclase, GGDEF domain XSP_001456 PF00072 Response regulator receiver domain XSP_001457 PF00889 Elongation factor TS XSP_001458 PF00318 Ribosomal protein S2 XSP_001464 PF05229 Spore Coat Protein U domain XSP_001465 PF00557 Metallopeptidase family M24 XSP_001466 PF08335 GlnD PII-uridylyltransferase XSP_001466 PF01966 HD domain XSP_001466 PF01909 Nucleotidyltransferase domain XSP_001467 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_001467 PF14602 Hexapeptide repeat of succinyl-transferase XSP_001467 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XSP_001469 PF03960 ArsC family XSP_001470 PF07687 Peptidase dimerisation domain XSP_001470 PF01546 Peptidase family M20/M25/M40 XSP_001471 PF00733 Asparagine synthase XSP_001471 PF13537 Glutamine amidotransferase domain XSP_001473 PF00593 TonB dependent receptor XSP_001473 PF07715 TonB-dependent Receptor Plug Domain XSP_001474 PF01804 Penicillin amidase XSP_001475 PF00210 Ferritin-like domain XSP_001476 PF05724 Thiopurine S-methyltransferase (TPMT) XSP_001477 PF03989 DNA gyrase C-terminal domain, beta-propeller XSP_001477 PF00521 DNA gyrase/topoisomerase IV, subunit A XSP_001480 PF02321 Outer membrane efflux protein XSP_001481 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_001481 PF00529 HlyD membrane-fusion protein of T1SS XSP_001482 PF07690 Major Facilitator Superfamily XSP_001486 PF14310 Fibronectin type III-like domain XSP_001486 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001486 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001488 PF00854 POT family XSP_001493 PF12802 MarR family XSP_001494 PF01432 Peptidase family M3 XSP_001495 PF00255 Glutathione peroxidase XSP_001496 PF00175 Oxidoreductase NAD-binding domain XSP_001496 PF00970 Oxidoreductase FAD-binding domain XSP_001497 PF00005 ABC transporter XSP_001498 PF05683 Fumarase C-terminus XSP_001498 PF05681 Fumarate hydratase (Fumerase) XSP_001501 PF00484 Carbonic anhydrase XSP_001502 PF02253 Phospholipase A1 XSP_001503 PF04306 Protein of unknown function (DUF456) XSP_001504 PF00313 'Cold-shock' DNA-binding domain XSP_001507 PF00899 ThiF family XSP_001508 PF01026 TatD related DNase XSP_001511 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001511 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001511 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001513 PF13417 Glutathione S-transferase, N-terminal domain XSP_001514 PF00733 Asparagine synthase XSP_001514 PF13537 Glutamine amidotransferase domain XSP_001515 PF03358 NADPH-dependent FMN reductase XSP_001516 PF00772 DnaB-like helicase N terminal domain XSP_001516 PF03796 DnaB-like helicase C terminal domain XSP_001517 PF00875 DNA photolyase XSP_001517 PF03441 FAD binding domain of DNA photolyase XSP_001518 PF00691 OmpA family XSP_001518 PF05736 OprF membrane domain XSP_001519 PF03466 LysR substrate binding domain XSP_001519 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001522 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_001522 PF00529 HlyD membrane-fusion protein of T1SS XSP_001523 PF00873 AcrB/AcrD/AcrF family XSP_001524 PF00106 short chain dehydrogenase XSP_001525 PF02321 Outer membrane efflux protein XSP_001526 PF00990 Diguanylate cyclase, GGDEF domain XSP_001526 PF08448 PAS fold XSP_001528 PF00990 Diguanylate cyclase, GGDEF domain XSP_001552 PF00082 Subtilase family XSP_001553 PF01668 SmpB protein XSP_001555 PF03658 RnfH family Ubiquitin XSP_001556 PF04355 SmpA / OmlA family XSP_001557 PF01475 Ferric uptake regulator family XSP_001558 PF02463 RecF/RecN/SMC N terminal domain XSP_001559 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XSP_001559 PF01628 HrcA protein C terminal domain XSP_001560 PF01025 GrpE XSP_001561 PF00012 Hsp70 protein XSP_001562 PF01556 DnaJ C terminal domain XSP_001562 PF00684 DnaJ central domain XSP_001562 PF00226 DnaJ domain XSP_001563 PF08543 Phosphomethylpyrimidine kinase XSP_001568 PF03412 Peptidase C39 family XSP_001568 PF00005 ABC transporter XSP_001568 PF00664 ABC transporter transmembrane region XSP_001569 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001569 PF03466 LysR substrate binding domain XSP_001570 PF00664 ABC transporter transmembrane region XSP_001570 PF00005 ABC transporter XSP_001571 PF01205 Uncharacterized protein family UPF0029 XSP_001572 PF03641 Possible lysine decarboxylase XSP_001573 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_001573 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_001574 PF02817 e3 binding domain XSP_001574 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_001574 PF00364 Biotin-requiring enzyme XSP_001575 PF00676 Dehydrogenase E1 component XSP_001575 PF02779 Transketolase, pyrimidine binding domain XSP_001575 PF16870 2-oxoglutarate dehydrogenase C-terminal XSP_001575 PF16078 2-oxoglutarate dehydrogenase N-terminus XSP_001577 PF08007 Cupin superfamily protein XSP_001578 PF08328 Adenylosuccinate lyase C-terminal XSP_001578 PF00206 Lyase XSP_001579 PF01595 Cyclin M transmembrane N-terminal domain XSP_001579 PF03471 Transporter associated domain XSP_001579 PF00571 CBS domain XSP_001580 PF00206 Lyase XSP_001580 PF10415 Fumarase C C-terminus XSP_001585 PF00005 ABC transporter XSP_001586 PF00392 Bacterial regulatory proteins, gntR family XSP_001588 PF00255 Glutathione peroxidase XSP_001589 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XSP_001589 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XSP_001590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XSP_001590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XSP_001591 PF04102 SlyX XSP_001595 PF07690 Major Facilitator Superfamily XSP_001596 PF00294 pfkB family carbohydrate kinase XSP_001598 PF02965 Vitamin B12 dependent methionine synthase, activation domain XSP_001598 PF02574 Homocysteine S-methyltransferase XSP_001598 PF00809 Pterin binding enzyme XSP_001598 PF02607 B12 binding domain XSP_001598 PF02310 B12 binding domain XSP_001599 PF00809 Pterin binding enzyme XSP_001599 PF02574 Homocysteine S-methyltransferase XSP_001600 PF01209 ubiE/COQ5 methyltransferase family XSP_001601 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001601 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001601 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001602 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_001602 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_001602 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_001605 PF08461 Ribonuclease R winged-helix domain XSP_001605 PF08206 Ribonuclease B OB domain XSP_001605 PF00773 RNB domain XSP_001605 PF17876 Cold shock domain XSP_001605 PF00575 S1 RNA binding domain XSP_001607 PF00588 SpoU rRNA Methylase family XSP_001607 PF08032 RNA 2'-O ribose methyltransferase substrate binding XSP_001609 PF00990 Diguanylate cyclase, GGDEF domain XSP_001609 PF07694 5TMR of 5TMR-LYT XSP_001610 PF00929 Exonuclease XSP_001612 PF01895 PhoU domain XSP_001613 PF00005 ABC transporter XSP_001614 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001615 PF00528 Binding-protein-dependent transport system inner membrane component XSP_001616 PF12849 PBP superfamily domain XSP_001617 PF12849 PBP superfamily domain XSP_001620 PF00484 Carbonic anhydrase XSP_001621 PF01740 STAS domain XSP_001621 PF00916 Sulfate permease family XSP_001622 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_001622 PF00633 Helix-hairpin-helix motif XSP_001622 PF10576 Iron-sulfur binding domain of endonuclease III XSP_001624 PF00378 Enoyl-CoA hydratase/isomerase XSP_001625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_001625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XSP_001626 PF00293 NUDIX domain XSP_001627 PF00581 Rhodanese-like domain XSP_001633 PF00005 ABC transporter XSP_001633 PF16326 ABC transporter C-terminal domain XSP_001633 PF12848 ABC transporter XSP_001634 PF10672 S-adenosylmethionine-dependent methyltransferase XSP_001634 PF02926 THUMP domain XSP_001634 PF01170 Putative RNA methylase family UPF0020 XSP_001635 PF01513 ATP-NAD kinase XSP_001640 PF00929 Exonuclease XSP_001640 PF08411 Exonuclease C-terminal XSP_001641 PF01494 FAD binding domain XSP_001642 PF00266 Aminotransferase class-V XSP_001644 PF06052 3-hydroxyanthranilic acid dioxygenase XSP_001645 PF00484 Carbonic anhydrase XSP_001646 PF04299 Putative FMN-binding domain XSP_001649 PF01336 OB-fold nucleic acid binding domain XSP_001649 PF00152 tRNA synthetases class II (D, K and N) XSP_001650 PF01521 Iron-sulphur cluster biosynthesis XSP_001651 PF01250 Ribosomal protein S6 XSP_001652 PF01084 Ribosomal protein S18 XSP_001653 PF03948 Ribosomal protein L9, C-terminal domain XSP_001653 PF01281 Ribosomal protein L9, N-terminal domain XSP_001654 PF02463 RecF/RecN/SMC N terminal domain XSP_001655 PF04354 ZipA, C-terminal FtsZ-binding domain XSP_001656 PF00155 Aminotransferase class I and II XSP_001657 PF03120 NAD-dependent DNA ligase OB-fold domain XSP_001657 PF12826 Helix-hairpin-helix motif XSP_001657 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XSP_001657 PF00533 BRCA1 C Terminus (BRCT) domain XSP_001657 PF01653 NAD-dependent DNA ligase adenylation domain XSP_001658 PF00152 tRNA synthetases class II (D, K and N) XSP_001660 PF01008 Initiation factor 2 subunit family XSP_001661 PF00521 DNA gyrase/topoisomerase IV, subunit A XSP_001661 PF03989 DNA gyrase C-terminal domain, beta-propeller XSP_001662 PF13360 PQQ-like domain XSP_001665 PF01175 Urocanase Rossmann-like domain XSP_001665 PF17391 Urocanase N-terminal domain XSP_001665 PF17392 Urocanase C-terminal domain XSP_001667 PF00221 Aromatic amino acid lyase XSP_001668 PF07969 Amidohydrolase family XSP_001675 PF01794 Ferric reductase like transmembrane component XSP_001676 PF00174 Oxidoreductase molybdopterin binding domain XSP_001677 PF00266 Aminotransferase class-V XSP_001678 PF01842 ACT domain XSP_001678 PF00800 Prephenate dehydratase XSP_001678 PF01817 Chorismate mutase type II XSP_001679 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XSP_001681 PF03544 Gram-negative bacterial TonB protein C-terminal XSP_001682 PF02403 Seryl-tRNA synthetase N-terminal domain XSP_001682 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_001683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001683 PF03466 LysR substrate binding domain XSP_001700 PF10091 Putative glucoamylase XSP_001700 PF06165 Glycosyltransferase family 36 XSP_001700 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XSP_001704 PF00664 ABC transporter transmembrane region XSP_001704 PF00005 ABC transporter XSP_001704 PF03412 Peptidase C39 family XSP_001713 PF05974 Domain of unknown function (DUF892) XSP_001715 PF01068 ATP dependent DNA ligase domain XSP_001715 PF04679 ATP dependent DNA ligase C terminal region XSP_001715 PF13298 DNA polymerase Ligase (LigD) XSP_001719 PF00672 HAMP domain XSP_001719 PF02203 Tar ligand binding domain homologue XSP_001719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001725 PF02203 Tar ligand binding domain homologue XSP_001725 PF00672 HAMP domain XSP_001725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001726 PF01494 FAD binding domain XSP_001728 PF13188 PAS domain XSP_001728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001728 PF00512 His Kinase A (phospho-acceptor) domain XSP_001728 PF08448 PAS fold XSP_001728 PF00072 Response regulator receiver domain XSP_001729 PF00072 Response regulator receiver domain XSP_001729 PF13426 PAS domain XSP_001729 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001730 PF06745 KaiC XSP_001731 PF13426 PAS domain XSP_001731 PF00072 Response regulator receiver domain XSP_001731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001733 PF03918 Cytochrome C biogenesis protein XSP_001734 PF08534 Redoxin XSP_001735 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XSP_001735 PF01578 Cytochrome C assembly protein XSP_001736 PF03100 CcmE XSP_001738 PF01578 Cytochrome C assembly protein XSP_001739 PF00082 Subtilase family XSP_001741 PF08281 Sigma-70, region 4 XSP_001741 PF04542 Sigma-70 region 2 XSP_001743 PF00034 Cytochrome c XSP_001746 PF05523 WxcM-like, C-terminal XSP_001750 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XSP_001751 PF01943 Polysaccharide biosynthesis protein XSP_001752 PF00535 Glycosyl transferase family 2 XSP_001755 PF05958 tRNA (Uracil-5-)-methyltransferase XSP_001757 PF01209 ubiE/COQ5 methyltransferase family XSP_001759 PF13579 Glycosyl transferase 4-like domain XSP_001759 PF00534 Glycosyl transferases group 1 XSP_001763 PF06745 KaiC XSP_001764 PF00005 ABC transporter XSP_001764 PF00664 ABC transporter transmembrane region XSP_001765 PF07690 Major Facilitator Superfamily XSP_001766 PF00296 Luciferase-like monooxygenase XSP_001769 PF00571 CBS domain XSP_001769 PF03471 Transporter associated domain XSP_001769 PF01595 Cyclin M transmembrane N-terminal domain XSP_001771 PF01384 Phosphate transporter family XSP_001774 PF01751 Toprim domain XSP_001774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001774 PF00986 DNA gyrase B subunit, carboxyl terminus XSP_001774 PF00204 DNA gyrase B XSP_001776 PF06418 CTP synthase N-terminus XSP_001776 PF00117 Glutamine amidotransferase class-I XSP_001777 PF00793 DAHP synthetase I family XSP_001778 PF00113 Enolase, C-terminal TIM barrel domain XSP_001778 PF03952 Enolase, N-terminal domain XSP_001779 PF04977 Septum formation initiator XSP_001780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XSP_001781 PF02542 YgbB family XSP_001782 PF01142 tRNA pseudouridine synthase D (TruD) XSP_001783 PF01713 Smr domain XSP_001784 PF01975 Survival protein SurE XSP_001786 PF09335 SNARE associated Golgi protein XSP_001787 PF01551 Peptidase family M23 XSP_001787 PF01476 LysM domain XSP_001789 PF01985 CRS1 / YhbY (CRM) domain XSP_001790 PF01728 FtsJ-like methyltransferase XSP_001791 PF01434 Peptidase family M41 XSP_001791 PF17862 AAA+ lid domain XSP_001791 PF06480 FtsH Extracellular XSP_001791 PF00004 ATPase family associated with various cellular activities (AAA) XSP_001792 PF00809 Pterin binding enzyme XSP_001794 PF17209 Hfq protein XSP_001795 PF16360 GTP-binding GTPase Middle Region XSP_001795 PF01926 50S ribosome-binding GTPase XSP_001795 PF13167 GTP-binding GTPase N-terminal XSP_001796 PF02464 Competence-damaged protein XSP_001797 PF03109 ABC1 family XSP_001798 PF01726 LexA DNA binding domain XSP_001798 PF00717 Peptidase S24-like XSP_001799 PF00154 recA bacterial DNA recombination protein XSP_001800 PF02631 RecX family XSP_001801 PF02272 DHHA1 domain XSP_001801 PF01411 tRNA synthetases class II (A) XSP_001801 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XSP_001802 PF02599 Global regulator protein family XSP_001804 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001804 PF08447 PAS fold XSP_001804 PF13426 PAS domain XSP_001805 PF02678 Pirin XSP_001805 PF17954 Quercetinase C-terminal cupin domain XSP_001806 PF03466 LysR substrate binding domain XSP_001806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001811 PF02581 Thiamine monophosphate synthase XSP_001811 PF08543 Phosphomethylpyrimidine kinase XSP_001814 PF02562 PhoH-like protein XSP_001814 PF13638 PIN domain XSP_001815 PF00578 AhpC/TSA family XSP_001818 PF00701 Dihydrodipicolinate synthetase family XSP_001820 PF00037 4Fe-4S binding domain XSP_001820 PF11953 Domain of unknown function (DUF3470) XSP_001821 PF05035 2-keto-3-deoxy-galactonokinase XSP_001822 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_001823 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_001823 PF13378 Enolase C-terminal domain-like XSP_001824 PF01081 KDPG and KHG aldolase XSP_001825 PF03466 LysR substrate binding domain XSP_001825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_001828 PF03442 Carbohydrate binding domain X2 XSP_001828 PF00942 Cellulose binding domain XSP_001831 PF16338 Domain of unknown function (DUF4968) XSP_001831 PF17137 Domain of unknown function (DUF5110) XSP_001831 PF01055 Glycosyl hydrolases family 31 XSP_001833 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XSP_001833 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XSP_001835 PF00083 Sugar (and other) transporter XSP_001839 PF01520 N-acetylmuramoyl-L-alanine amidase XSP_001840 PF02649 Type I GTP cyclohydrolase folE2 XSP_001842 PF12626 Polymerase A arginine-rich C-terminus XSP_001842 PF12627 Probable RNA and SrmB- binding site of polymerase A XSP_001842 PF01743 Poly A polymerase head domain XSP_001843 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XSP_001844 PF02548 Ketopantoate hydroxymethyltransferase XSP_001845 PF02569 Pantoate-beta-alanine ligase XSP_001846 PF02261 Aspartate decarboxylase XSP_001847 PF00342 Phosphoglucose isomerase XSP_001851 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_001851 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_001851 PF14310 Fibronectin type III-like domain XSP_001853 PF00474 Sodium:solute symporter family XSP_001854 PF00360 Phytochrome region XSP_001854 PF00990 Diguanylate cyclase, GGDEF domain XSP_001854 PF01590 GAF domain XSP_001854 PF00563 EAL domain XSP_001855 PF00150 Cellulase (glycosyl hydrolase family 5) XSP_001855 PF02013 Cellulose or protein binding domain XSP_001856 PF00072 Response regulator receiver domain XSP_001858 PF04551 GcpE protein XSP_001859 PF01569 PAP2 superfamily XSP_001860 PF07690 Major Facilitator Superfamily XSP_001861 PF01177 Asp/Glu/Hydantoin racemase XSP_001862 PF00892 EamA-like transporter family XSP_001863 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XSP_001863 PF01565 FAD binding domain XSP_001864 PF01180 Dihydroorotate dehydrogenase XSP_001867 PF00171 Aldehyde dehydrogenase family XSP_001872 PF00535 Glycosyl transferase family 2 XSP_001873 PF14883 Hypothetical glycosyl hydrolase family 13 XSP_001873 PF01522 Polysaccharide deacetylase XSP_001875 PF03073 TspO/MBR family XSP_001877 PF13840 ACT domain XSP_001877 PF00696 Amino acid kinase family XSP_001877 PF01842 ACT domain XSP_001877 PF03447 Homoserine dehydrogenase, NAD binding domain XSP_001877 PF00742 Homoserine dehydrogenase XSP_001878 PF00288 GHMP kinases N terminal domain XSP_001878 PF08544 GHMP kinases C terminal XSP_001880 PF00291 Pyridoxal-phosphate dependent enzyme XSP_001880 PF14821 Threonine synthase N terminus XSP_001882 PF13545 Crp-like helix-turn-helix domain XSP_001882 PF00027 Cyclic nucleotide-binding domain XSP_001883 PF03129 Anticodon binding domain XSP_001883 PF13393 Histidyl-tRNA synthetase XSP_001885 PF01634 ATP phosphoribosyltransferase XSP_001885 PF08029 HisG, C-terminal domain XSP_001886 PF00815 Histidinol dehydrogenase XSP_001887 PF00155 Aminotransferase class I and II XSP_001888 PF00475 Imidazoleglycerol-phosphate dehydratase XSP_001889 PF00117 Glutamine amidotransferase class-I XSP_001890 PF00977 Histidine biosynthesis protein XSP_001891 PF00977 Histidine biosynthesis protein XSP_001892 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XSP_001892 PF01502 Phosphoribosyl-AMP cyclohydrolase XSP_001896 PF03079 ARD/ARD' family XSP_001897 PF00596 Class II Aldolase and Adducin N-terminal domain XSP_001898 PF13520 Amino acid permease XSP_001899 PF13520 Amino acid permease XSP_001901 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_001901 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_001902 PF02913 FAD linked oxidases, C-terminal domain XSP_001902 PF01565 FAD binding domain XSP_001906 PF09285 Elongation factor P, C-terminal XSP_001906 PF08207 Elongation factor P (EF-P) KOW-like domain XSP_001906 PF01132 Elongation factor P (EF-P) OB domain XSP_001907 PF00106 short chain dehydrogenase XSP_001908 PF00682 HMGL-like XSP_001909 PF00378 Enoyl-CoA hydratase/isomerase XSP_001911 PF07670 Nucleoside recognition XSP_001911 PF07664 Ferrous iron transport protein B C terminus XSP_001911 PF02421 Ferrous iron transport protein B XSP_001914 PF00155 Aminotransferase class I and II XSP_001915 PF03475 3-alpha domain XSP_001915 PF03473 MOSC domain XSP_001916 PF01113 Dihydrodipicolinate reductase, N-terminus XSP_001916 PF05173 Dihydrodipicolinate reductase, C-terminus XSP_001917 PF00117 Glutamine amidotransferase class-I XSP_001917 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XSP_001919 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XSP_001919 PF02142 MGS-like domain XSP_001919 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XSP_001920 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_001920 PF03449 Transcription elongation factor, N-terminal XSP_001922 PF01368 DHH family XSP_001922 PF02272 DHHA1 domain XSP_001922 PF17768 RecJ OB domain XSP_001925 PF00072 Response regulator receiver domain XSP_001925 PF04397 LytTr DNA-binding domain XSP_001928 PF01336 OB-fold nucleic acid binding domain XSP_001928 PF00152 tRNA synthetases class II (D, K and N) XSP_001929 PF00072 Response regulator receiver domain XSP_001930 PF00512 His Kinase A (phospho-acceptor) domain XSP_001930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001930 PF01627 Hpt domain XSP_001930 PF00072 Response regulator receiver domain XSP_001931 PF00378 Enoyl-CoA hydratase/isomerase XSP_001932 PF13193 AMP-binding enzyme C-terminal domain XSP_001932 PF00501 AMP-binding enzyme XSP_001934 PF00330 Aconitase family (aconitate hydratase) XSP_001934 PF00694 Aconitase C-terminal domain XSP_001937 PF11791 Aconitate B N-terminal domain XSP_001937 PF06434 Aconitate hydratase 2 N-terminus XSP_001937 PF00330 Aconitase family (aconitate hydratase) XSP_001938 PF00561 alpha/beta hydrolase fold XSP_001939 PF00563 EAL domain XSP_001939 PF03707 Bacterial signalling protein N terminal repeat XSP_001939 PF00990 Diguanylate cyclase, GGDEF domain XSP_001940 PF00072 Response regulator receiver domain XSP_001940 PF01339 CheB methylesterase XSP_001941 PF03975 CheD chemotactic sensory transduction XSP_001942 PF01739 CheR methyltransferase, SAM binding domain XSP_001942 PF03705 CheR methyltransferase, all-alpha domain XSP_001943 PF00672 HAMP domain XSP_001943 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001943 PF02203 Tar ligand binding domain homologue XSP_001945 PF01584 CheW-like domain XSP_001946 PF07238 PilZ domain XSP_001946 PF07317 Flagellar regulator YcgR XSP_001948 PF00672 HAMP domain XSP_001948 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001948 PF02203 Tar ligand binding domain homologue XSP_001949 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001949 PF00672 HAMP domain XSP_001950 PF00672 HAMP domain XSP_001950 PF02203 Tar ligand binding domain homologue XSP_001950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001951 PF02203 Tar ligand binding domain homologue XSP_001951 PF00672 HAMP domain XSP_001951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001952 PF02203 Tar ligand binding domain homologue XSP_001952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001952 PF00672 HAMP domain XSP_001954 PF02203 Tar ligand binding domain homologue XSP_001954 PF00672 HAMP domain XSP_001954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001955 PF00672 HAMP domain XSP_001956 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_001956 PF08269 Cache domain XSP_001958 PF01584 CheW-like domain XSP_001958 PF09078 CheY binding XSP_001958 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_001958 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001958 PF01627 Hpt domain XSP_001959 PF00072 Response regulator receiver domain XSP_001961 PF01584 CheW-like domain XSP_001962 PF13614 AAA domain XSP_001963 PF00691 OmpA family XSP_001963 PF13677 Membrane MotB of proton-channel complex MotA/MotB XSP_001964 PF01618 MotA/TolQ/ExbB proton channel family XSP_001970 PF00144 Beta-lactamase XSP_001974 PF01584 CheW-like domain XSP_001974 PF00072 Response regulator receiver domain XSP_001974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_001974 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_001974 PF01627 Hpt domain XSP_001975 PF04344 Chemotaxis phosphatase, CheZ XSP_001976 PF00072 Response regulator receiver domain XSP_001977 PF04542 Sigma-70 region 2 XSP_001977 PF04539 Sigma-70 region 3 XSP_001977 PF04545 Sigma-70, region 4 XSP_001978 PF10609 NUBPL iron-transfer P-loop NTPase XSP_001979 PF00448 SRP54-type protein, GTPase domain XSP_001980 PF00771 FHIPEP family XSP_001981 PF01312 FlhB HrpN YscU SpaS Family XSP_001982 PF00563 EAL domain XSP_001982 PF00990 Diguanylate cyclase, GGDEF domain XSP_001982 PF03707 Bacterial signalling protein N terminal repeat XSP_001983 PF00563 EAL domain XSP_001983 PF00990 Diguanylate cyclase, GGDEF domain XSP_001983 PF03707 Bacterial signalling protein N terminal repeat XSP_001984 PF00563 EAL domain XSP_001984 PF13188 PAS domain XSP_001984 PF00990 Diguanylate cyclase, GGDEF domain XSP_001984 PF03707 Bacterial signalling protein N terminal repeat XSP_001985 PF01311 Bacterial export proteins, family 1 XSP_001986 PF01313 Bacterial export proteins, family 3 XSP_001987 PF00813 FliP family XSP_001988 PF04347 Flagellar biosynthesis protein, FliO XSP_001989 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XSP_001990 PF02154 Flagellar motor switch protein FliM XSP_001990 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XSP_001994 PF18269 T3SS EscN ATPase C-terminal domain XSP_001994 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_001996 PF14842 FliG N-terminal domain XSP_001996 PF14841 FliG middle domain XSP_001996 PF01706 FliG C-terminal domain XSP_001997 PF01514 Secretory protein of YscJ/FliF family XSP_001997 PF08345 Flagellar M-ring protein C-terminal XSP_001998 PF02049 Flagellar hook-basal body complex protein FliE XSP_001999 PF00535 Glycosyl transferase family 2 XSP_001999 PF00534 Glycosyl transferases group 1 XSP_002001 PF02348 Cytidylyltransferase XSP_002009 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_002009 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_002011 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XSP_002012 PF02954 Bacterial regulatory protein, Fis family XSP_002012 PF06490 Flagellar regulatory protein FleQ XSP_002012 PF00158 Sigma-54 interaction domain XSP_002013 PF01339 CheB methylesterase XSP_002013 PF00072 Response regulator receiver domain XSP_002014 PF04963 Sigma-54 factor, core binding domain XSP_002014 PF04552 Sigma-54, DNA binding domain XSP_002014 PF00309 Sigma-54 factor, Activator interacting domain (AID) XSP_002015 PF00196 Bacterial regulatory proteins, luxR family XSP_002015 PF00072 Response regulator receiver domain XSP_002018 PF02561 Flagellar protein FliS XSP_002019 PF02465 Flagellar hook-associated protein 2 N-terminus XSP_002019 PF07195 Flagellar hook-associated protein 2 C-terminus XSP_002019 PF07196 Flagellin hook IN motif XSP_002020 PF00669 Bacterial flagellin N-terminal helical region XSP_002020 PF07196 Flagellin hook IN motif XSP_002020 PF00700 Bacterial flagellin C-terminal helical region XSP_002022 PF07196 Flagellin hook IN motif XSP_002022 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002023 PF10135 Rod binding protein XSP_002023 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XSP_002024 PF02119 Flagellar P-ring protein XSP_002025 PF02107 Flagellar L-ring protein XSP_002026 PF00460 Flagella basal body rod protein XSP_002026 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002027 PF00460 Flagella basal body rod protein XSP_002027 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002028 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002028 PF07559 Flagellar basal body protein FlaE XSP_002028 PF00460 Flagella basal body rod protein XSP_002029 PF03963 Flagellar hook capping protein - N-terminal region XSP_002030 PF00460 Flagella basal body rod protein XSP_002030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XSP_002032 PF01584 CheW-like domain XSP_002032 PF00072 Response regulator receiver domain XSP_002036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002036 PF00512 His Kinase A (phospho-acceptor) domain XSP_002037 PF00563 EAL domain XSP_002037 PF00990 Diguanylate cyclase, GGDEF domain XSP_002037 PF03707 Bacterial signalling protein N terminal repeat XSP_002038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002038 PF07730 Histidine kinase XSP_002039 PF00563 EAL domain XSP_002039 PF03707 Bacterial signalling protein N terminal repeat XSP_002039 PF00990 Diguanylate cyclase, GGDEF domain XSP_002041 PF12729 Four helix bundle sensory module for signal transduction XSP_002041 PF00672 HAMP domain XSP_002041 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002042 PF04356 Protein of unknown function (DUF489) XSP_002044 PF00293 NUDIX domain XSP_002046 PF02617 ATP-dependent Clp protease adaptor protein ClpS XSP_002047 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_002047 PF02861 Clp amino terminal domain, pathogenicity island component XSP_002047 PF17871 AAA lid domain XSP_002047 PF00004 ATPase family associated with various cellular activities (AAA) XSP_002047 PF07724 AAA domain (Cdc48 subfamily) XSP_002048 PF01176 Translation initiation factor 1A / IF-1 XSP_002049 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XSP_002051 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002052 PF09397 Ftsk gamma domain XSP_002052 PF17854 FtsK alpha domain XSP_002052 PF01580 FtsK/SpoIIIE family XSP_002052 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XSP_002054 PF03548 Outer membrane lipoprotein carrier protein LolA XSP_002055 PF00004 ATPase family associated with various cellular activities (AAA) XSP_002055 PF12002 MgsA AAA+ ATPase C terminal XSP_002055 PF16193 AAA C-terminal domain XSP_002056 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XSP_002057 PF00108 Thiolase, N-terminal domain XSP_002057 PF02803 Thiolase, C-terminal domain XSP_002058 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XSP_002058 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XSP_002058 PF00378 Enoyl-CoA hydratase/isomerase XSP_002060 PF00334 Nucleoside diphosphate kinase XSP_002061 PF04055 Radical SAM superfamily XSP_002063 PF13464 Domain of unknown function (DUF4115) XSP_002065 PF01011 PQQ enzyme repeat XSP_002065 PF13360 PQQ-like domain XSP_002066 PF01926 50S ribosome-binding GTPase XSP_002066 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XSP_002067 PF00994 Probable molybdopterin binding domain XSP_002067 PF03453 MoeA N-terminal region (domain I and II) XSP_002067 PF03454 MoeA C-terminal region (domain IV) XSP_002068 PF00899 ThiF family XSP_002071 PF03372 Endonuclease/Exonuclease/phosphatase family XSP_002073 PF00994 Probable molybdopterin binding domain XSP_002073 PF03453 MoeA N-terminal region (domain I and II) XSP_002073 PF03454 MoeA C-terminal region (domain IV) XSP_002074 PF12804 MobA-like NTP transferase domain XSP_002076 PF10414 Sirohaem synthase dimerisation region XSP_002076 PF14824 Sirohaem biosynthesis protein central XSP_002076 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_002077 PF00072 Response regulator receiver domain XSP_002077 PF03861 ANTAR domain XSP_002079 PF07690 Major Facilitator Superfamily XSP_002080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XSP_002080 PF04324 BFD-like [2Fe-2S] binding domain XSP_002080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XSP_002080 PF18267 Rubredoxin NAD+ reductase C-terminal domain XSP_002080 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002081 PF00355 Rieske [2Fe-2S] domain XSP_002081 PF11723 Homotrimeric ring hydroxylase XSP_002082 PF04324 BFD-like [2Fe-2S] binding domain XSP_002082 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XSP_002082 PF01568 Molydopterin dinucleotide binding domain XSP_002082 PF00384 Molybdopterin oxidoreductase XSP_002083 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_002086 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XSP_002088 PF00483 Nucleotidyl transferase XSP_002090 PF01266 FAD dependent oxidoreductase XSP_002094 PF00990 Diguanylate cyclase, GGDEF domain XSP_002094 PF08448 PAS fold XSP_002094 PF08447 PAS fold XSP_002094 PF00563 EAL domain XSP_002095 PF12951 Passenger-associated-transport-repeat XSP_002095 PF12951 Passenger-associated-transport-repeat XSP_002096 PF03797 Autotransporter beta-domain XSP_002096 PF00082 Subtilase family XSP_002101 PF07995 Glucose / Sorbosone dehydrogenase XSP_002103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002103 PF13426 PAS domain XSP_002103 PF00072 Response regulator receiver domain XSP_002109 PF01494 FAD binding domain XSP_002110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XSP_002111 PF00672 HAMP domain XSP_002111 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002112 PF03466 LysR substrate binding domain XSP_002114 PF07690 Major Facilitator Superfamily XSP_002120 PF03466 LysR substrate binding domain XSP_002120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002122 PF01062 Bestrophin, RFP-TM, chloride channel XSP_002124 PF00196 Bacterial regulatory proteins, luxR family XSP_002124 PF00072 Response regulator receiver domain XSP_002127 PF00106 short chain dehydrogenase XSP_002129 PF01106 NifU-like domain XSP_002130 PF01329 Pterin 4 alpha carbinolamine dehydratase XSP_002132 PF02535 ZIP Zinc transporter XSP_002133 PF01479 S4 domain XSP_002133 PF00849 RNA pseudouridylate synthase XSP_002134 PF00575 S1 RNA binding domain XSP_002134 PF12111 Polyribonucleotide phosphorylase C terminal XSP_002134 PF10150 Ribonuclease E/G family XSP_002135 PF00072 Response regulator receiver domain XSP_002135 PF00196 Bacterial regulatory proteins, luxR family XSP_002138 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_002140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XSP_002140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XSP_002140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XSP_002145 PF01066 CDP-alcohol phosphatidyltransferase XSP_002146 PF01541 GIY-YIG catalytic domain XSP_002146 PF08459 UvrC Helix-hairpin-helix N-terminal XSP_002146 PF02151 UvrB/uvrC motif XSP_002148 PF01451 Low molecular weight phosphotyrosine protein phosphatase XSP_002149 PF02348 Cytidylyltransferase XSP_002151 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XSP_002152 PF00005 ABC transporter XSP_002152 PF00664 ABC transporter transmembrane region XSP_002153 PF02472 Biopolymer transport protein ExbD/TolR XSP_002154 PF01618 MotA/TolQ/ExbB proton channel family XSP_002155 PF03772 Competence protein XSP_002155 PF00753 Metallo-beta-lactamase superfamily XSP_002157 PF00005 ABC transporter XSP_002158 PF02687 FtsX-like permease family XSP_002158 PF12704 MacB-like periplasmic core domain XSP_002160 PF03937 Flavinator of succinate dehydrogenase XSP_002161 PF13085 2Fe-2S iron-sulfur cluster binding domain XSP_002163 PF02910 Fumarate reductase flavoprotein C-term XSP_002163 PF00890 FAD binding domain XSP_002164 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XSP_002165 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XSP_002168 PF17912 MalK OB fold domain XSP_002168 PF00005 ABC transporter XSP_002169 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XSP_002169 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XSP_002170 PF02685 Glucokinase XSP_002171 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XSP_002172 PF00920 Dehydratase family XSP_002173 PF01081 KDPG and KHG aldolase XSP_002174 PF00873 AcrB/AcrD/AcrF family XSP_002175 PF00873 AcrB/AcrD/AcrF family XSP_002176 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002178 PF00034 Cytochrome c XSP_002187 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_002187 PF00672 HAMP domain XSP_002187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002187 PF00512 His Kinase A (phospho-acceptor) domain XSP_002187 PF01627 Hpt domain XSP_002187 PF00072 Response regulator receiver domain XSP_002188 PF16921 Tex protein YqgF-like domain XSP_002188 PF09371 Tex-like protein N-terminal domain XSP_002188 PF00575 S1 RNA binding domain XSP_002188 PF17674 HHH domain XSP_002193 PF00561 alpha/beta hydrolase fold XSP_002195 PF01066 CDP-alcohol phosphatidyltransferase XSP_002199 PF03618 Kinase/pyrophosphorylase XSP_002200 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XSP_002200 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002200 PF00391 PEP-utilising enzyme, mobile domain XSP_002201 PF05552 Conserved TM helix XSP_002201 PF00924 Mechanosensitive ion channel XSP_002202 PF00929 Exonuclease XSP_002203 PF14437 MafB19-like deaminase XSP_002204 PF02742 Iron dependent repressor, metal binding and dimerisation domain XSP_002204 PF01325 Iron dependent repressor, N-terminal DNA binding domain XSP_002205 PF01566 Natural resistance-associated macrophage protein XSP_002206 PF00561 alpha/beta hydrolase fold XSP_002209 PF02540 NAD synthase XSP_002209 PF00117 Glutamine amidotransferase class-I XSP_002209 PF00958 GMP synthase C terminal domain XSP_002210 PF00478 IMP dehydrogenase / GMP reductase domain XSP_002210 PF00571 CBS domain XSP_002211 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XSP_002211 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XSP_002213 PF00483 Nucleotidyl transferase XSP_002214 PF02719 Polysaccharide biosynthesis protein XSP_002215 PF00953 Glycosyl transferase family 4 XSP_002216 PF18073 Rubredoxin metal binding domain XSP_002218 PF00216 Bacterial DNA-binding protein XSP_002219 PF00575 S1 RNA binding domain XSP_002220 PF02224 Cytidylate kinase XSP_002221 PF00444 Ribosomal protein L36 XSP_002223 PF04371 Porphyromonas-type peptidyl-arginine deiminase XSP_002224 PF00795 Carbon-nitrogen hydrolase XSP_002229 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002230 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002234 PF00356 Bacterial regulatory proteins, lacI family XSP_002236 PF03795 YCII-related domain XSP_002237 PF02616 Segregation and condensation protein ScpA XSP_002238 PF04079 Segregation and condensation complex subunit ScpB XSP_002239 PF01479 S4 domain XSP_002239 PF00849 RNA pseudouridylate synthase XSP_002242 PF00795 Carbon-nitrogen hydrolase XSP_002243 PF00155 Aminotransferase class I and II XSP_002244 PF00005 ABC transporter XSP_002245 PF03379 CcmB protein XSP_002246 PF01578 Cytochrome C assembly protein XSP_002248 PF03100 CcmE XSP_002249 PF01578 Cytochrome C assembly protein XSP_002249 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XSP_002250 PF08534 Redoxin XSP_002251 PF03918 Cytochrome C biogenesis protein XSP_002253 PF00561 alpha/beta hydrolase fold XSP_002256 PF00005 ABC transporter XSP_002256 PF00664 ABC transporter transmembrane region XSP_002257 PF00005 ABC transporter XSP_002257 PF00664 ABC transporter transmembrane region XSP_002258 PF01654 Cytochrome bd terminal oxidase subunit I XSP_002259 PF02322 Cytochrome bd terminal oxidase subunit II XSP_002263 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain XSP_002263 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XSP_002266 PF00171 Aldehyde dehydrogenase family XSP_002267 PF00696 Amino acid kinase family XSP_002267 PF01472 PUA domain XSP_002270 PF00206 Lyase XSP_002271 PF01118 Semialdehyde dehydrogenase, NAD binding domain XSP_002273 PF00696 Amino acid kinase family XSP_002273 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XSP_002274 PF01546 Peptidase family M20/M25/M40 XSP_002274 PF07687 Peptidase dimerisation domain XSP_002275 PF00764 Arginosuccinate synthase XSP_002277 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XSP_002277 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XSP_002279 PF09190 DALR domain XSP_002279 PF01406 tRNA synthetases class I (C) catalytic domain XSP_002280 PF02657 Fe-S metabolism associated domain XSP_002282 PF01258 Prokaryotic dksA/traR C4-type zinc finger XSP_002283 PF01809 Putative membrane protein insertion efficiency factor XSP_002284 PF01979 Amidohydrolase family XSP_002285 PF01551 Peptidase family M23 XSP_002285 PF08460 Bacterial SH3 domain XSP_002287 PF06751 Ethanolamine ammonia lyase large subunit (EutB) XSP_002288 PF05985 Ethanolamine ammonia-lyase light chain (EutC) XSP_002297 PF13419 Haloacid dehalogenase-like hydrolase XSP_002299 PF01979 Amidohydrolase family XSP_002301 PF09285 Elongation factor P, C-terminal XSP_002301 PF08207 Elongation factor P (EF-P) KOW-like domain XSP_002301 PF01132 Elongation factor P (EF-P) OB domain XSP_002302 PF04055 Radical SAM superfamily XSP_002303 PF03707 Bacterial signalling protein N terminal repeat XSP_002303 PF00563 EAL domain XSP_002303 PF13188 PAS domain XSP_002303 PF00990 Diguanylate cyclase, GGDEF domain XSP_002305 PF00588 SpoU rRNA Methylase family XSP_002306 PF00459 Inositol monophosphatase family XSP_002307 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XSP_002307 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XSP_002308 PF00545 ribonuclease XSP_002311 PF00271 Helicase conserved C-terminal domain XSP_002311 PF03880 DbpA RNA binding domain XSP_002311 PF00270 DEAD/DEAH box helicase XSP_002312 PF00156 Phosphoribosyl transferase domain XSP_002313 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XSP_002314 PF07859 alpha/beta hydrolase fold XSP_002315 PF14497 Glutathione S-transferase, C-terminal domain XSP_002315 PF02798 Glutathione S-transferase, N-terminal domain XSP_002316 PF00313 'Cold-shock' DNA-binding domain XSP_002317 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XSP_002318 PF07152 YaeQ protein XSP_002320 PF00072 Response regulator receiver domain XSP_002320 PF00990 Diguanylate cyclase, GGDEF domain XSP_002320 PF00563 EAL domain XSP_002321 PF01435 Peptidase family M48 XSP_002322 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_002323 PF00106 short chain dehydrogenase XSP_002324 PF05233 PHB accumulation regulatory domain XSP_002324 PF07879 PHB/PHA accumulation regulator DNA-binding domain XSP_002327 PF01119 DNA mismatch repair protein, C-terminal domain XSP_002327 PF08676 MutL C terminal dimerisation domain XSP_002328 PF01520 N-acetylmuramoyl-L-alanine amidase XSP_002328 PF11741 AMIN domain XSP_002330 PF01256 Carbohydrate kinase XSP_002330 PF03853 YjeF-related protein N-terminus XSP_002331 PF08331 Domain of unknown function (DUF1730) XSP_002332 PF13742 OB-fold nucleic acid binding domain XSP_002332 PF02601 Exonuclease VII, large subunit XSP_002334 PF03781 Sulfatase-modifying factor enzyme 1 XSP_002335 PF00570 HRDC domain XSP_002335 PF01612 3'-5' exonuclease XSP_002339 PF00990 Diguanylate cyclase, GGDEF domain XSP_002339 PF07694 5TMR of 5TMR-LYT XSP_002340 PF01584 CheW-like domain XSP_002341 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002341 PF02203 Tar ligand binding domain homologue XSP_002341 PF00672 HAMP domain XSP_002342 PF02245 Methylpurine-DNA glycosylase (MPG) XSP_002343 PF00271 Helicase conserved C-terminal domain XSP_002343 PF00270 DEAD/DEAH box helicase XSP_002343 PF08494 DEAD/H associated XSP_002345 PF04386 Stringent starvation protein B XSP_002346 PF00043 Glutathione S-transferase, C-terminal domain XSP_002346 PF02798 Glutathione S-transferase, N-terminal domain XSP_002347 PF02167 Cytochrome C1 family XSP_002348 PF00033 Cytochrome b/b6/petB XSP_002348 PF00032 Cytochrome b(C-terminal)/b6/petD XSP_002349 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XSP_002349 PF00355 Rieske [2Fe-2S] domain XSP_002350 PF01464 Transglycosylase SLT domain XSP_002353 PF00919 Uncharacterized protein family UPF0004 XSP_002353 PF04055 Radical SAM superfamily XSP_002353 PF01938 TRAM domain XSP_002354 PF02562 PhoH-like protein XSP_002355 PF02130 Uncharacterized protein family UPF0054 XSP_002357 PF00571 CBS domain XSP_002357 PF03471 Transporter associated domain XSP_002360 PF00171 Aldehyde dehydrogenase family XSP_002362 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002363 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002364 PF00005 ABC transporter XSP_002364 PF08402 TOBE domain XSP_002365 PF02321 Outer membrane efflux protein XSP_002366 PF07690 Major Facilitator Superfamily XSP_002367 PF13533 Biotin-lipoyl like XSP_002368 PF13416 Bacterial extracellular solute-binding protein XSP_002369 PF00202 Aminotransferase class-III XSP_002370 PF00120 Glutamine synthetase, catalytic domain XSP_002371 PF07722 Peptidase C26 XSP_002372 PF00120 Glutamine synthetase, catalytic domain XSP_002373 PF01266 FAD dependent oxidoreductase XSP_002374 PF00072 Response regulator receiver domain XSP_002374 PF00990 Diguanylate cyclase, GGDEF domain XSP_002375 PF07690 Major Facilitator Superfamily XSP_002375 PF00083 Sugar (and other) transporter XSP_002377 PF00384 Molybdopterin oxidoreductase XSP_002378 PF02634 FdhD/NarQ family XSP_002379 PF07690 Major Facilitator Superfamily XSP_002380 PF00202 Aminotransferase class-III XSP_002382 PF04286 Protein of unknown function (DUF445) XSP_002383 PF00672 HAMP domain XSP_002383 PF01627 Hpt domain XSP_002383 PF00072 Response regulator receiver domain XSP_002383 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XSP_002383 PF00512 His Kinase A (phospho-acceptor) domain XSP_002383 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002384 PF00072 Response regulator receiver domain XSP_002385 PF07690 Major Facilitator Superfamily XSP_002386 PF00440 Bacterial regulatory proteins, tetR family XSP_002387 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_002388 PF00106 short chain dehydrogenase XSP_002389 PF00107 Zinc-binding dehydrogenase XSP_002389 PF08240 Alcohol dehydrogenase GroES-like domain XSP_002391 PF05088 Bacterial NAD-glutamate dehydrogenase XSP_002393 PF00529 HlyD membrane-fusion protein of T1SS XSP_002393 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002394 PF00873 AcrB/AcrD/AcrF family XSP_002395 PF00356 Bacterial regulatory proteins, lacI family XSP_002396 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XSP_002396 PF05524 PEP-utilising enzyme, N-terminal XSP_002396 PF00381 PTS HPr component phosphorylation site XSP_002396 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002396 PF00391 PEP-utilising enzyme, mobile domain XSP_002397 PF00294 pfkB family carbohydrate kinase XSP_002398 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XSP_002400 PF07549 SecD/SecF GG Motif XSP_002400 PF02355 Protein export membrane protein XSP_002401 PF02355 Protein export membrane protein XSP_002401 PF13721 SecD export protein N-terminal TM region XSP_002401 PF07549 SecD/SecF GG Motif XSP_002402 PF02699 Preprotein translocase subunit XSP_002403 PF01702 Queuine tRNA-ribosyltransferase XSP_002404 PF02547 Queuosine biosynthesis protein XSP_002412 PF02927 Cellulase N-terminal ig-like domain XSP_002412 PF00759 Glycosyl hydrolase family 9 XSP_002414 PF00037 4Fe-4S binding domain XSP_002416 PF01467 Cytidylyltransferase-like XSP_002418 PF00183 Hsp90 protein XSP_002418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002420 PF00593 TonB dependent receptor XSP_002420 PF07715 TonB-dependent Receptor Plug Domain XSP_002421 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_002421 PF00326 Prolyl oligopeptidase family XSP_002427 PF13520 Amino acid permease XSP_002430 PF00557 Metallopeptidase family M24 XSP_002430 PF01321 Creatinase/Prolidase N-terminal domain XSP_002431 PF00171 Aldehyde dehydrogenase family XSP_002432 PF00701 Dihydrodipicolinate synthetase family XSP_002433 PF04324 BFD-like [2Fe-2S] binding domain XSP_002433 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002435 PF01266 FAD dependent oxidoreductase XSP_002436 PF05544 Proline racemase XSP_002438 PF00448 SRP54-type protein, GTPase domain XSP_002438 PF02881 SRP54-type protein, helical bundle domain XSP_002440 PF00633 Helix-hairpin-helix motif XSP_002440 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_002440 PF14815 NUDIX domain XSP_002441 PF04362 Bacterial Fe(2+) trafficking XSP_002442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002442 PF00072 Response regulator receiver domain XSP_002442 PF13426 PAS domain XSP_002443 PF13649 Methyltransferase domain XSP_002447 PF08212 Lipocalin-like domain XSP_002449 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_002449 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_002449 PF12806 Acetyl-CoA dehydrogenase C-terminal like XSP_002449 PF02770 Acyl-CoA dehydrogenase, middle domain XSP_002451 PF02780 Transketolase, C-terminal domain XSP_002451 PF02779 Transketolase, pyrimidine binding domain XSP_002451 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XSP_002455 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XSP_002456 PF16123 Hydroxyacylglutathione hydrolase C-terminus XSP_002456 PF00753 Metallo-beta-lactamase superfamily XSP_002457 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XSP_002457 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XSP_002460 PF03808 Glycosyl transferase WecB/TagA/CpsF family XSP_002463 PF14667 Polysaccharide biosynthesis C-terminal domain XSP_002465 PF13439 Glycosyltransferase Family 4 XSP_002465 PF00534 Glycosyl transferases group 1 XSP_002469 PF02397 Bacterial sugar transferase XSP_002473 PF13411 MerR HTH family regulatory protein XSP_002474 PF00216 Bacterial DNA-binding protein XSP_002475 PF03147 Ferredoxin-fold anticodon binding domain XSP_002475 PF03483 B3/4 domain XSP_002475 PF01588 Putative tRNA binding domain XSP_002475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XSP_002475 PF03484 tRNA synthetase B5 domain XSP_002476 PF01409 tRNA synthetases class II core domain (F) XSP_002476 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XSP_002477 PF00453 Ribosomal protein L20 XSP_002478 PF01632 Ribosomal protein L35 XSP_002479 PF05198 Translation initiation factor IF-3, N-terminal domain XSP_002479 PF00707 Translation initiation factor IF-3, C-terminal domain XSP_002480 PF03129 Anticodon binding domain XSP_002480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_002480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XSP_002480 PF02824 TGS domain XSP_002481 PF00356 Bacterial regulatory proteins, lacI family XSP_002482 PF00128 Alpha amylase, catalytic domain XSP_002482 PF00686 Starch binding domain XSP_002485 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XSP_002485 PF10566 Glycoside hydrolase 97 XSP_002485 PF14508 Glycosyl-hydrolase 97 N-terminal XSP_002487 PF00128 Alpha amylase, catalytic domain XSP_002488 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XSP_002489 PF05101 Type IV secretory pathway, VirB3-like protein XSP_002491 PF01464 Transglycosylase SLT domain XSP_002492 PF00437 Type II/IV secretion system protein XSP_002493 PF03743 Bacterial conjugation TrbI-like protein XSP_002497 PF02534 Type IV secretory system Conjugative DNA transfer XSP_002500 PF04851 Type III restriction enzyme, res subunit XSP_002500 PF02151 UvrB/uvrC motif XSP_002500 PF12344 Ultra-violet resistance protein B XSP_002500 PF17757 UvrB interaction domain XSP_002500 PF00271 Helicase conserved C-terminal domain XSP_002503 PF07963 Prokaryotic N-terminal methylation motif XSP_002503 PF00114 Pilin (bacterial filament) XSP_002504 PF05567 Neisseria PilC beta-propeller domain XSP_002509 PF11892 Domain of unknown function (DUF3412) XSP_002509 PF03641 Possible lysine decarboxylase XSP_002509 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XSP_002510 PF00593 TonB dependent receptor XSP_002511 PF01914 MarC family integral membrane protein XSP_002513 PF00462 Glutaredoxin XSP_002514 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XSP_002514 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XSP_002515 PF02222 ATP-grasp domain XSP_002515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XSP_002516 PF00731 AIR carboxylase XSP_002518 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XSP_002518 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XSP_002520 PF00013 KH domain XSP_002520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XSP_002520 PF01138 3' exoribonuclease family, domain 1 XSP_002520 PF03725 3' exoribonuclease family, domain 2 XSP_002520 PF00575 S1 RNA binding domain XSP_002521 PF00312 Ribosomal protein S15 XSP_002522 PF01509 TruB family pseudouridylate synthase (N terminal domain) XSP_002522 PF09157 Pseudouridine synthase II TruB, C-terminal XSP_002522 PF16198 tRNA pseudouridylate synthase B C-terminal domain XSP_002523 PF02033 Ribosome-binding factor A XSP_002524 PF04760 Translation initiation factor IF-2, N-terminal region XSP_002524 PF00009 Elongation factor Tu GTP binding domain XSP_002524 PF11987 Translation-initiation factor 2 XSP_002524 PF08364 Bacterial translation initiation factor IF-2 associated region XSP_002525 PF08529 NusA N-terminal domain XSP_002525 PF00575 S1 RNA binding domain XSP_002525 PF13184 NusA-like KH domain XSP_002526 PF02576 RimP N-terminal domain XSP_002526 PF17384 RimP C-terminal SH3 domain XSP_002528 PF00361 Proton-conducting membrane transporter XSP_002529 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XSP_002529 PF00361 Proton-conducting membrane transporter XSP_002530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XSP_002530 PF00361 Proton-conducting membrane transporter XSP_002531 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XSP_002532 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XSP_002533 PF12838 4Fe-4S dicluster domain XSP_002534 PF00146 NADH dehydrogenase XSP_002535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XSP_002535 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XSP_002535 PF00384 Molybdopterin oxidoreductase XSP_002536 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XSP_002536 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XSP_002536 PF10531 SLBB domain XSP_002538 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XSP_002539 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XSP_002540 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XSP_002541 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XSP_002543 PF03840 Preprotein translocase SecG subunit XSP_002544 PF00121 Triosephosphate isomerase XSP_002545 PF00106 short chain dehydrogenase XSP_002548 PF00990 Diguanylate cyclase, GGDEF domain XSP_002548 PF03707 Bacterial signalling protein N terminal repeat XSP_002548 PF00563 EAL domain XSP_002551 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_002551 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_002551 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_002551 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_002552 PF01039 Carboxyl transferase domain XSP_002552 PF17848 Acetyl-coA carboxylase zinc finger domain XSP_002553 PF00290 Tryptophan synthase alpha chain XSP_002555 PF00291 Pyridoxal-phosphate dependent enzyme XSP_002556 PF03466 LysR substrate binding domain XSP_002556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002557 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XSP_002558 PF01416 tRNA pseudouridine synthase XSP_002561 PF01118 Semialdehyde dehydrogenase, NAD binding domain XSP_002561 PF02774 Semialdehyde dehydrogenase, dimerisation domain XSP_002562 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_002562 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_002563 PF01264 Chorismate synthase XSP_002565 PF05175 Methyltransferase small domain XSP_002566 PF02630 SCO1/SenC XSP_002567 PF02666 Phosphatidylserine decarboxylase XSP_002569 PF05872 Bacterial protein of unknown function (DUF853) XSP_002571 PF00293 NUDIX domain XSP_002574 PF03449 Transcription elongation factor, N-terminal XSP_002574 PF01272 Transcription elongation factor, GreA/GreB, C-term XSP_002575 PF04055 Radical SAM superfamily XSP_002575 PF18693 TRAM domain XSP_002575 PF00919 Uncharacterized protein family UPF0004 XSP_002576 PF01738 Dienelactone hydrolase family XSP_002580 PF00692 dUTPase XSP_002581 PF10609 NUBPL iron-transfer P-loop NTPase XSP_002582 PF07715 TonB-dependent Receptor Plug Domain XSP_002582 PF00593 TonB dependent receptor XSP_002584 PF05649 Peptidase family M13 XSP_002584 PF01431 Peptidase family M13 XSP_002585 PF05649 Peptidase family M13 XSP_002585 PF01431 Peptidase family M13 XSP_002589 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_002589 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_002590 PF01266 FAD dependent oxidoreductase XSP_002591 PF04235 Protein of unknown function (DUF418) XSP_002593 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XSP_002594 PF00877 NlpC/P60 family XSP_002595 PF00877 NlpC/P60 family XSP_002597 PF13649 Methyltransferase domain XSP_002598 PF00375 Sodium:dicarboxylate symporter family XSP_002599 PF00245 Alkaline phosphatase XSP_002600 PF09179 TilS substrate binding domain XSP_002600 PF11734 TilS substrate C-terminal domain XSP_002600 PF01171 PP-loop family XSP_002601 PF02609 Exonuclease VII small subunit XSP_002602 PF00348 Polyprenyl synthetase XSP_002603 PF14521 Lysine-specific metallo-endopeptidase XSP_002605 PF01523 Putative modulator of DNA gyrase XSP_002606 PF04751 Protein of unknown function (DUF615) XSP_002607 PF01523 Putative modulator of DNA gyrase XSP_002609 PF13502 AsmA-like C-terminal region XSP_002609 PF13116 Protein of unknown function XSP_002610 PF10150 Ribonuclease E/G family XSP_002610 PF00575 S1 RNA binding domain XSP_002611 PF02545 Maf-like protein XSP_002612 PF04402 Protein of unknown function (DUF541) XSP_002614 PF02590 Predicted SPOUT methyltransferase XSP_002618 PF01467 Cytidylyltransferase-like XSP_002621 PF00133 tRNA synthetases class I (I, L, M and V) XSP_002621 PF08264 Anticodon-binding domain of tRNA XSP_002621 PF13603 Leucyl-tRNA synthetase, Domain 2 XSP_002623 PF00085 Thioredoxin XSP_002627 PF03466 LysR substrate binding domain XSP_002627 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002632 PF00005 ABC transporter XSP_002632 PF00664 ABC transporter transmembrane region XSP_002634 PF00999 Sodium/hydrogen exchanger family XSP_002635 PF00144 Beta-lactamase XSP_002636 PF03737 Aldolase/RraA XSP_002639 PF00990 Diguanylate cyclase, GGDEF domain XSP_002639 PF00072 Response regulator receiver domain XSP_002640 PF01479 S4 domain XSP_002640 PF00849 RNA pseudouridylate synthase XSP_002641 PF08448 PAS fold XSP_002641 PF00990 Diguanylate cyclase, GGDEF domain XSP_002641 PF00563 EAL domain XSP_002642 PF00271 Helicase conserved C-terminal domain XSP_002642 PF03880 DbpA RNA binding domain XSP_002642 PF00270 DEAD/DEAH box helicase XSP_002643 PF04542 Sigma-70 region 2 XSP_002643 PF04539 Sigma-70 region 3 XSP_002643 PF04545 Sigma-70, region 4 XSP_002647 PF01494 FAD binding domain XSP_002652 PF06029 AlkA N-terminal domain XSP_002652 PF00730 HhH-GPD superfamily base excision DNA repair protein XSP_002653 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XSP_002653 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XSP_002655 PF00654 Voltage gated chloride channel XSP_002658 PF07715 TonB-dependent Receptor Plug Domain XSP_002658 PF00593 TonB dependent receptor XSP_002660 PF00248 Aldo/keto reductase family XSP_002661 PF07690 Major Facilitator Superfamily XSP_002662 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002662 PF03466 LysR substrate binding domain XSP_002664 PF12833 Helix-turn-helix domain XSP_002664 PF06719 AraC-type transcriptional regulator N-terminus XSP_002666 PF03466 LysR substrate binding domain XSP_002666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002667 PF16859 Tetracyclin repressor-like, C-terminal domain XSP_002667 PF00440 Bacterial regulatory proteins, tetR family XSP_002668 PF02321 Outer membrane efflux protein XSP_002669 PF00873 AcrB/AcrD/AcrF family XSP_002670 PF00529 HlyD membrane-fusion protein of T1SS XSP_002670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_002672 PF01475 Ferric uptake regulator family XSP_002673 PF00749 tRNA synthetases class I (E and Q), catalytic domain XSP_002675 PF00795 Carbon-nitrogen hydrolase XSP_002678 PF06123 Inner membrane protein CreD XSP_002682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002682 PF00672 HAMP domain XSP_002682 PF00512 His Kinase A (phospho-acceptor) domain XSP_002683 PF00486 Transcriptional regulatory protein, C terminal XSP_002683 PF00072 Response regulator receiver domain XSP_002684 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XSP_002686 PF17757 UvrB interaction domain XSP_002686 PF02559 CarD-like/TRCF domain XSP_002686 PF00270 DEAD/DEAH box helicase XSP_002686 PF03461 TRCF domain XSP_002686 PF00271 Helicase conserved C-terminal domain XSP_002688 PF09078 CheY binding XSP_002688 PF01584 CheW-like domain XSP_002688 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_002688 PF01627 Hpt domain XSP_002688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002689 PF00672 HAMP domain XSP_002689 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002690 PF01584 CheW-like domain XSP_002691 PF00990 Diguanylate cyclase, GGDEF domain XSP_002691 PF00563 EAL domain XSP_002691 PF13426 PAS domain XSP_002692 PF03705 CheR methyltransferase, all-alpha domain XSP_002692 PF01739 CheR methyltransferase, SAM binding domain XSP_002693 PF00072 Response regulator receiver domain XSP_002693 PF01339 CheB methylesterase XSP_002694 PF13091 PLD-like domain XSP_002695 PF05649 Peptidase family M13 XSP_002695 PF01431 Peptidase family M13 XSP_002697 PF00300 Histidine phosphatase superfamily (branch 1) XSP_002698 PF04493 Endonuclease V XSP_002699 PF05726 Pirin C-terminal cupin domain XSP_002699 PF02678 Pirin XSP_002701 PF02678 Pirin XSP_002701 PF05726 Pirin C-terminal cupin domain XSP_002702 PF13722 5TM C-terminal transporter carbon starvation CstA XSP_002702 PF02554 Carbon starvation protein CstA XSP_002703 PF04328 Selenoprotein, putative XSP_002704 PF13419 Haloacid dehalogenase-like hydrolase XSP_002709 PF12804 MobA-like NTP transferase domain XSP_002710 PF13478 XdhC Rossmann domain XSP_002710 PF02625 XdhC and CoxI family XSP_002711 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase XSP_002711 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain XSP_002712 PF03450 CO dehydrogenase flavoprotein C-terminal domain XSP_002712 PF00941 FAD binding domain in molybdopterin dehydrogenase XSP_002713 PF10518 TAT (twin-arginine translocation) pathway signal sequence XSP_002713 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_002713 PF01799 [2Fe-2S] binding domain XSP_002714 PF00698 Acyl transferase domain XSP_002714 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_002714 PF00107 Zinc-binding dehydrogenase XSP_002714 PF00550 Phosphopantetheine attachment site XSP_002714 PF08240 Alcohol dehydrogenase GroES-like domain XSP_002714 PF16197 Ketoacyl-synthetase C-terminal extension XSP_002714 PF14765 Polyketide synthase dehydratase XSP_002714 PF08659 KR domain XSP_002714 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_002715 PF00360 Phytochrome region XSP_002715 PF00990 Diguanylate cyclase, GGDEF domain XSP_002715 PF00563 EAL domain XSP_002715 PF01590 GAF domain XSP_002716 PF00436 Single-strand binding protein family XSP_002717 PF00348 Polyprenyl synthetase XSP_002719 PF08245 Mur ligase middle domain XSP_002719 PF02875 Mur ligase family, glutamate ligase domain XSP_002722 PF01842 ACT domain XSP_002722 PF00696 Amino acid kinase family XSP_002723 PF02567 Phenazine biosynthesis-like protein XSP_002724 PF02567 Phenazine biosynthesis-like protein XSP_002726 PF02566 OsmC-like protein XSP_002727 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XSP_002727 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XSP_002728 PF03652 Holliday junction resolvase XSP_002729 PF02622 Uncharacterized ACR, COG1678 XSP_002730 PF00958 GMP synthase C terminal domain XSP_002730 PF00117 Glutamine amidotransferase class-I XSP_002730 PF03352 Methyladenine glycosylase XSP_002730 PF13673 Acetyltransferase (GNAT) domain XSP_002730 PF13302 Acetyltransferase (GNAT) domain XSP_002734 PF00437 Type II/IV secretion system protein XSP_002735 PF00437 Type II/IV secretion system protein XSP_002736 PF01168 Alanine racemase, N-terminal domain XSP_002737 PF03807 NADP oxidoreductase coenzyme F420-dependent XSP_002737 PF14748 Pyrroline-5-carboxylate reductase dimerisation XSP_002743 PF01965 DJ-1/PfpI family XSP_002745 PF02082 Transcriptional regulator XSP_002746 PF01458 Uncharacterized protein family (UPF0051) XSP_002747 PF00005 ABC transporter XSP_002748 PF01458 Uncharacterized protein family (UPF0051) XSP_002749 PF00266 Aminotransferase class-V XSP_002751 PF00355 Rieske [2Fe-2S] domain XSP_002752 PF00593 TonB dependent receptor XSP_002752 PF07715 TonB-dependent Receptor Plug Domain XSP_002753 PF13640 2OG-Fe(II) oxygenase superfamily XSP_002753 PF18331 PKHD-type hydroxylase C-terminal domain XSP_002758 PF02424 ApbE family XSP_002759 PF00175 Oxidoreductase NAD-binding domain XSP_002759 PF00258 Flavodoxin XSP_002759 PF00667 FAD binding domain XSP_002762 PF01546 Peptidase family M20/M25/M40 XSP_002762 PF07687 Peptidase dimerisation domain XSP_002764 PF01636 Phosphotransferase enzyme family XSP_002765 PF00483 Nucleotidyl transferase XSP_002766 PF00308 Bacterial dnaA protein XSP_002767 PF01594 AI-2E family transporter XSP_002769 PF02769 AIR synthase related protein, C-terminal domain XSP_002769 PF00586 AIR synthase related protein, N-terminal domain XSP_002771 PF00551 Formyl transferase XSP_002775 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XSP_002776 PF01722 BolA-like protein XSP_002777 PF00571 CBS domain XSP_002777 PF01380 SIS domain XSP_002780 PF03968 OstA-like protein XSP_002781 PF00005 ABC transporter XSP_002782 PF04552 Sigma-54, DNA binding domain XSP_002782 PF04963 Sigma-54 factor, core binding domain XSP_002782 PF00309 Sigma-54 factor, Activator interacting domain (AID) XSP_002783 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XSP_002784 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XSP_002785 PF02603 HPr Serine kinase N terminus XSP_002785 PF07475 HPr Serine kinase C-terminal domain XSP_002786 PF03668 P-loop ATPase protein family XSP_002788 PF00381 PTS HPr component phosphorylation site XSP_002789 PF02896 PEP-utilising enzyme, TIM barrel domain XSP_002789 PF00391 PEP-utilising enzyme, mobile domain XSP_002789 PF05524 PEP-utilising enzyme, N-terminal XSP_002790 PF01769 Divalent cation transporter XSP_002790 PF03448 MgtE intracellular N domain XSP_002790 PF00571 CBS domain XSP_002791 PF00756 Putative esterase XSP_002792 PF02322 Cytochrome bd terminal oxidase subunit II XSP_002793 PF01654 Cytochrome bd terminal oxidase subunit I XSP_002794 PF00324 Amino acid permease XSP_002795 PF00544 Pectate lyase XSP_002796 PF00561 alpha/beta hydrolase fold XSP_002797 PF00196 Bacterial regulatory proteins, luxR family XSP_002798 PF00324 Amino acid permease XSP_002801 PF12706 Beta-lactamase superfamily domain XSP_002802 PF04820 Tryptophan halogenase XSP_002807 PF09278 MerR, DNA binding XSP_002807 PF00376 MerR family regulatory protein XSP_002808 PF07690 Major Facilitator Superfamily XSP_002810 PF03738 Glutathionylspermidine synthase preATP-grasp XSP_002815 PF04012 PspA/IM30 family XSP_002817 PF00583 Acetyltransferase (GNAT) family XSP_002818 PF01243 Pyridoxamine 5'-phosphate oxidase XSP_002818 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XSP_002819 PF01202 Shikimate kinase XSP_002820 PF01761 3-dehydroquinate synthase XSP_002822 PF01208 Uroporphyrinogen decarboxylase (URO-D) XSP_002836 PF00158 Sigma-54 interaction domain XSP_002836 PF01590 GAF domain XSP_002836 PF02954 Bacterial regulatory protein, Fis family XSP_002837 PF07690 Major Facilitator Superfamily XSP_002838 PF00672 HAMP domain XSP_002838 PF00512 His Kinase A (phospho-acceptor) domain XSP_002838 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_002838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002838 PF01627 Hpt domain XSP_002838 PF00072 Response regulator receiver domain XSP_002839 PF00672 HAMP domain XSP_002839 PF00072 Response regulator receiver domain XSP_002839 PF01627 Hpt domain XSP_002839 PF00512 His Kinase A (phospho-acceptor) domain XSP_002839 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002839 PF17149 Periplasmic sensor domain found in signal transduction proteins XSP_002840 PF04264 YceI-like domain XSP_002841 PF01292 Prokaryotic cytochrome b561 XSP_002844 PF03315 Serine dehydratase beta chain XSP_002844 PF03313 Serine dehydratase alpha chain XSP_002845 PF12697 Alpha/beta hydrolase family XSP_002846 PF03447 Homoserine dehydrogenase, NAD binding domain XSP_002846 PF00696 Amino acid kinase family XSP_002846 PF00742 Homoserine dehydrogenase XSP_002847 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_002848 PF00561 alpha/beta hydrolase fold XSP_002849 PF01476 LysM domain XSP_002849 PF08525 Opacity-associated protein A N-terminal motif XSP_002849 PF01551 Peptidase family M23 XSP_002850 PF00009 Elongation factor Tu GTP binding domain XSP_002850 PF16658 Class II release factor RF3, C-terminal domain XSP_002851 PF03006 Haemolysin-III related XSP_002852 PF05170 AsmA family XSP_002854 PF00535 Glycosyl transferase family 2 XSP_002855 PF00912 Transglycosylase XSP_002856 PF01430 Hsp33 protein XSP_002858 PF00593 TonB dependent receptor XSP_002858 PF07715 TonB-dependent Receptor Plug Domain XSP_002859 PF00440 Bacterial regulatory proteins, tetR family XSP_002861 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XSP_002861 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XSP_002861 PF09317 Domain of unknown function (DUF1974) XSP_002866 PF01597 Glycine cleavage H-protein XSP_002867 PF01571 Aminomethyltransferase folate-binding domain XSP_002867 PF08669 Glycine cleavage T-protein C-terminal barrel domain XSP_002868 PF02694 Uncharacterised BCR, YnfA/UPF0060 family XSP_002870 PF00459 Inositol monophosphatase family XSP_002871 PF00293 NUDIX domain XSP_002872 PF00202 Aminotransferase class-III XSP_002873 PF04452 RNA methyltransferase XSP_002874 PF02685 Glucokinase XSP_002877 PF00704 Glycosyl hydrolases family 18 XSP_002877 PF01476 LysM domain XSP_002878 PF00728 Glycosyl hydrolase family 20, catalytic domain XSP_002878 PF02838 Glycosyl hydrolase family 20, domain 2 XSP_002878 PF07691 PA14 domain XSP_002880 PF07691 PA14 domain XSP_002880 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_002880 PF14310 Fibronectin type III-like domain XSP_002880 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_002882 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_002882 PF07971 Glycosyl hydrolase family 92 XSP_002883 PF01301 Glycosyl hydrolases family 35 XSP_002887 PF03932 CutC family XSP_002888 PF01112 Asparaginase XSP_002889 PF13302 Acetyltransferase (GNAT) domain XSP_002891 PF00072 Response regulator receiver domain XSP_002891 PF01339 CheB methylesterase XSP_002892 PF01627 Hpt domain XSP_002892 PF02895 Signal transducing histidine kinase, homodimeric domain XSP_002892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_002892 PF01584 CheW-like domain XSP_002892 PF00072 Response regulator receiver domain XSP_002893 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XSP_002893 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002894 PF01584 CheW-like domain XSP_002895 PF00072 Response regulator receiver domain XSP_002896 PF00072 Response regulator receiver domain XSP_002897 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XSP_002897 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XSP_002899 PF03747 ADP-ribosylglycohydrolase XSP_002900 PF00814 Glycoprotease family XSP_002901 PF13307 Helicase C-terminal domain XSP_002901 PF04851 Type III restriction enzyme, res subunit XSP_002903 PF14814 Bifunctional transglycosylase second domain XSP_002903 PF00905 Penicillin binding protein transpeptidase domain XSP_002903 PF00912 Transglycosylase XSP_002904 PF00535 Glycosyl transferase family 2 XSP_002906 PF02824 TGS domain XSP_002906 PF04607 Region found in RelA / SpoT proteins XSP_002906 PF13291 ACT domain XSP_002908 PF08042 PqqA family XSP_002909 PF12706 Beta-lactamase superfamily domain XSP_002910 PF03070 TENA/THI-4/PQQC family XSP_002911 PF13186 Iron-sulfur cluster-binding domain XSP_002911 PF04055 Radical SAM superfamily XSP_002914 PF02685 Glucokinase XSP_002917 PF00271 Helicase conserved C-terminal domain XSP_002917 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XSP_002917 PF04408 Helicase associated domain (HA2) XSP_002917 PF11898 Domain of unknown function (DUF3418) XSP_002917 PF00270 DEAD/DEAH box helicase XSP_002918 PF00210 Ferritin-like domain XSP_002919 PF00270 DEAD/DEAH box helicase XSP_002919 PF00570 HRDC domain XSP_002919 PF16124 RecQ zinc-binding XSP_002919 PF09382 RQC domain XSP_002919 PF00271 Helicase conserved C-terminal domain XSP_002923 PF00849 RNA pseudouridylate synthase XSP_002923 PF01479 S4 domain XSP_002925 PF00672 HAMP domain XSP_002925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002929 PF06508 Queuosine biosynthesis protein QueC XSP_002933 PF00248 Aldo/keto reductase family XSP_002934 PF04055 Radical SAM superfamily XSP_002936 PF00691 OmpA family XSP_002937 PF04052 TolB amino-terminal domain XSP_002937 PF07676 WD40-like Beta Propeller Repeat XSP_002939 PF02472 Biopolymer transport protein ExbD/TolR XSP_002940 PF01618 MotA/TolQ/ExbB proton channel family XSP_002941 PF03061 Thioesterase superfamily XSP_002942 PF05496 Holliday junction DNA helicase RuvB P-loop domain XSP_002942 PF17864 RuvB AAA lid domain XSP_002942 PF05491 RuvB C-terminal winged helix domain XSP_002943 PF02705 K+ potassium transporter XSP_002944 PF01330 RuvA N terminal domain XSP_002944 PF07499 RuvA, C-terminal domain XSP_002945 PF02075 Crossover junction endodeoxyribonuclease RuvC XSP_002946 PF01709 Transcriptional regulator XSP_002949 PF02938 GAD domain XSP_002949 PF00152 tRNA synthetases class II (D, K and N) XSP_002949 PF01336 OB-fold nucleic acid binding domain XSP_002952 PF07690 Major Facilitator Superfamily XSP_002954 PF05506 Domain of unknown function (DUF756) XSP_002954 PF04185 Phosphoesterase family XSP_002956 PF03466 LysR substrate binding domain XSP_002956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_002957 PF00005 ABC transporter XSP_002957 PF12848 ABC transporter XSP_002958 PF07715 TonB-dependent Receptor Plug Domain XSP_002958 PF00593 TonB dependent receptor XSP_002960 PF07715 TonB-dependent Receptor Plug Domain XSP_002960 PF00593 TonB dependent receptor XSP_002961 PF07715 TonB-dependent Receptor Plug Domain XSP_002961 PF00593 TonB dependent receptor XSP_002962 PF00067 Cytochrome P450 XSP_002963 PF00999 Sodium/hydrogen exchanger family XSP_002963 PF02254 TrkA-N domain XSP_002965 PF07660 Secretin and TonB N terminus short domain XSP_002965 PF00593 TonB dependent receptor XSP_002965 PF07715 TonB-dependent Receptor Plug Domain XSP_002966 PF00206 Lyase XSP_002966 PF02655 ATP-grasp domain XSP_002967 PF04183 IucA / IucC family XSP_002967 PF06276 Ferric iron reductase FhuF-like transporter XSP_002968 PF07690 Major Facilitator Superfamily XSP_002970 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XSP_002970 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XSP_002973 PF02277 Phosphoribosyltransferase XSP_002974 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XSP_002975 PF00593 TonB dependent receptor XSP_002975 PF07715 TonB-dependent Receptor Plug Domain XSP_002976 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_002978 PF10431 C-terminal, D2-small domain, of ClpB protein XSP_002978 PF07724 AAA domain (Cdc48 subfamily) XSP_002978 PF17871 AAA lid domain XSP_002978 PF02861 Clp amino terminal domain, pathogenicity island component XSP_002978 PF00004 ATPase family associated with various cellular activities (AAA) XSP_002979 PF00005 ABC transporter XSP_002980 PF00528 Binding-protein-dependent transport system inner membrane component XSP_002981 PF09084 NMT1/THI5 like XSP_002982 PF00248 Aldo/keto reductase family XSP_002983 PF00296 Luciferase-like monooxygenase XSP_002984 PF00593 TonB dependent receptor XSP_002984 PF07715 TonB-dependent Receptor Plug Domain XSP_002985 PF01541 GIY-YIG catalytic domain XSP_002992 PF00593 TonB dependent receptor XSP_002992 PF07715 TonB-dependent Receptor Plug Domain XSP_002993 PF02358 Trehalose-phosphatase XSP_002994 PF00723 Glycosyl hydrolases family 15 XSP_002995 PF00982 Glycosyltransferase family 20 XSP_002996 PF01011 PQQ enzyme repeat XSP_002997 PF00672 HAMP domain XSP_002997 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_002997 PF02203 Tar ligand binding domain homologue XSP_002999 PF00849 RNA pseudouridylate synthase XSP_003000 PF13525 Outer membrane lipoprotein XSP_003002 PF00795 Carbon-nitrogen hydrolase XSP_003002 PF02540 NAD synthase XSP_003005 PF00549 CoA-ligase XSP_003005 PF02629 CoA binding domain XSP_003006 PF00549 CoA-ligase XSP_003006 PF08442 ATP-grasp domain XSP_003007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003007 PF00512 His Kinase A (phospho-acceptor) domain XSP_003008 PF00158 Sigma-54 interaction domain XSP_003008 PF00072 Response regulator receiver domain XSP_003008 PF02954 Bacterial regulatory protein, Fis family XSP_003009 PF00437 Type II/IV secretion system protein XSP_003009 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003010 PF16363 GDP-mannose 4,6 dehydratase XSP_003011 PF01593 Flavin containing amine oxidoreductase XSP_003014 PF00114 Pilin (bacterial filament) XSP_003014 PF07963 Prokaryotic N-terminal methylation motif XSP_003015 PF00482 Type II secretion system (T2SS), protein F XSP_003016 PF01478 Type IV leader peptidase family XSP_003016 PF06750 Bacterial Peptidase A24 N-terminal domain XSP_003017 PF01121 Dephospho-CoA kinase XSP_003019 PF11808 Phosphate regulon sensor protein PhoR XSP_003019 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003019 PF00512 His Kinase A (phospho-acceptor) domain XSP_003019 PF00989 PAS fold XSP_003020 PF00486 Transcriptional regulatory protein, C terminal XSP_003020 PF00072 Response regulator receiver domain XSP_003022 PF08443 RimK-like ATP-grasp domain XSP_003022 PF18030 RimK PreATP-grasp domain XSP_003023 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XSP_003023 PF00128 Alpha amylase, catalytic domain XSP_003026 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003026 PF00672 HAMP domain XSP_003026 PF02203 Tar ligand binding domain homologue XSP_003027 PF01161 Phosphatidylethanolamine-binding protein XSP_003031 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XSP_003031 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XSP_003032 PF00939 Sodium:sulfate symporter transmembrane region XSP_003034 PF03797 Autotransporter beta-domain XSP_003034 PF00657 GDSL-like Lipase/Acylhydrolase XSP_003036 PF05690 Thiazole biosynthesis protein ThiG XSP_003037 PF02390 Putative methyltransferase XSP_003038 PF03600 Citrate transporter XSP_003038 PF02080 TrkA-C domain XSP_003041 PF01557 Fumarylacetoacetate (FAA) hydrolase family XSP_003042 PF01741 Large-conductance mechanosensitive channel, MscL XSP_003044 PF00356 Bacterial regulatory proteins, lacI family XSP_003046 PF00703 Glycosyl hydrolases family 2 XSP_003046 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain XSP_003046 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_003047 PF10566 Glycoside hydrolase 97 XSP_003047 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation XSP_003047 PF14508 Glycosyl-hydrolase 97 N-terminal XSP_003048 PF00135 Carboxylesterase family XSP_003049 PF00588 SpoU rRNA Methylase family XSP_003049 PF08032 RNA 2'-O ribose methyltransferase substrate binding XSP_003052 PF01433 Peptidase family M1 domain XSP_003052 PF11838 ERAP1-like C-terminal domain XSP_003053 PF00873 AcrB/AcrD/AcrF family XSP_003054 PF00529 HlyD membrane-fusion protein of T1SS XSP_003054 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003055 PF00009 Elongation factor Tu GTP binding domain XSP_003056 PF01507 Phosphoadenosine phosphosulfate reductase family XSP_003057 PF00258 Flavodoxin XSP_003057 PF00175 Oxidoreductase NAD-binding domain XSP_003057 PF00667 FAD binding domain XSP_003058 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XSP_003058 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XSP_003059 PF01507 Phosphoadenosine phosphosulfate reductase family XSP_003063 PF00512 His Kinase A (phospho-acceptor) domain XSP_003063 PF00672 HAMP domain XSP_003063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003063 PF01627 Hpt domain XSP_003063 PF00072 Response regulator receiver domain XSP_003065 PF03466 LysR substrate binding domain XSP_003065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003066 PF10414 Sirohaem synthase dimerisation region XSP_003066 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XSP_003066 PF14824 Sirohaem biosynthesis protein central XSP_003067 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003068 PF01661 Macro domain XSP_003069 PF00274 Fructose-bisphosphate aldolase class-I XSP_003070 PF02887 Pyruvate kinase, alpha/beta domain XSP_003070 PF00224 Pyruvate kinase, barrel domain XSP_003072 PF00162 Phosphoglycerate kinase XSP_003076 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XSP_003076 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XSP_003079 PF03922 OmpW family XSP_003081 PF04273 Putative phosphatase (DUF442) XSP_003081 PF00753 Metallo-beta-lactamase superfamily XSP_003083 PF00528 Binding-protein-dependent transport system inner membrane component XSP_003084 PF00005 ABC transporter XSP_003084 PF03459 TOBE domain XSP_003092 PF03734 L,D-transpeptidase catalytic domain XSP_003092 PF01476 LysM domain XSP_003093 PF01551 Peptidase family M23 XSP_003093 PF04225 Opacity-associated protein A LysM-like domain XSP_003095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003095 PF03466 LysR substrate binding domain XSP_003096 PF00593 TonB dependent receptor XSP_003096 PF07715 TonB-dependent Receptor Plug Domain XSP_003097 PF02779 Transketolase, pyrimidine binding domain XSP_003097 PF02780 Transketolase, C-terminal domain XSP_003097 PF00456 Transketolase, thiamine diphosphate binding domain XSP_003098 PF00375 Sodium:dicarboxylate symporter family XSP_003102 PF07584 Aerotolerance regulator N-terminal XSP_003102 PF13519 von Willebrand factor type A domain XSP_003106 PF07726 ATPase family associated with various cellular activities (AAA) XSP_003106 PF17863 AAA lid domain XSP_003107 PF11741 AMIN domain XSP_003107 PF00263 Bacterial type II and III secretion system protein XSP_003107 PF03958 Bacterial type II/III secretion system short domain XSP_003107 PF07660 Secretin and TonB N terminus short domain XSP_003112 PF17092 Penicillin-binding protein OB-like domain XSP_003112 PF00912 Transglycosylase XSP_003112 PF00905 Penicillin binding protein transpeptidase domain XSP_003114 PF00285 Citrate synthase, C-terminal domain XSP_003115 PF01197 Ribosomal protein L31 XSP_003116 PF01156 Inosine-uridine preferring nucleoside hydrolase XSP_003117 PF17191 RecG wedge domain XSP_003117 PF00271 Helicase conserved C-terminal domain XSP_003117 PF00270 DEAD/DEAH box helicase XSP_003118 PF01042 Endoribonuclease L-PSP XSP_003119 PF04607 Region found in RelA / SpoT proteins XSP_003119 PF13291 ACT domain XSP_003119 PF02824 TGS domain XSP_003120 PF01192 RNA polymerase Rpb6 XSP_003121 PF00625 Guanylate kinase XSP_003122 PF03755 YicC-like family, N-terminal region XSP_003122 PF08340 Domain of unknown function (DUF1732) XSP_003123 PF03725 3' exoribonuclease family, domain 2 XSP_003123 PF01138 3' exoribonuclease family, domain 1 XSP_003125 PF01725 Ham1 family XSP_003126 PF04055 Radical SAM superfamily XSP_003126 PF06969 HemN C-terminal domain XSP_003129 PF00557 Metallopeptidase family M24 XSP_003131 PF05195 Aminopeptidase P, N-terminal domain XSP_003131 PF00557 Metallopeptidase family M24 XSP_003132 PF03695 Uncharacterised protein family (UPF0149) XSP_003134 PF05164 Cell division protein ZapA XSP_003138 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XSP_003140 PF13369 Transglutaminase-like superfamily XSP_003141 PF00301 Rubredoxin XSP_003142 PF02581 Thiamine monophosphate synthase XSP_003144 PF00202 Aminotransferase class-III XSP_003145 PF00196 Bacterial regulatory proteins, luxR family XSP_003145 PF17874 MalT-like TPR region XSP_003146 PF00127 Copper binding proteins, plastocyanin/azurin family XSP_003147 PF00155 Aminotransferase class I and II XSP_003149 PF00034 Cytochrome c XSP_003149 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XSP_003150 PF01593 Flavin containing amine oxidoreductase XSP_003153 PF00202 Aminotransferase class-III XSP_003154 PF00027 Cyclic nucleotide-binding domain XSP_003154 PF00520 Ion transport protein XSP_003159 PF01569 PAP2 superfamily XSP_003160 PF01062 Bestrophin, RFP-TM, chloride channel XSP_003162 PF01225 Mur ligase family, catalytic domain XSP_003162 PF02875 Mur ligase family, glutamate ligase domain XSP_003162 PF08245 Mur ligase middle domain XSP_003164 PF00365 Phosphofructokinase XSP_003166 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XSP_003171 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XSP_003182 PF03030 Inorganic H+ pyrophosphatase XSP_003184 PF00719 Inorganic pyrophosphatase XSP_003186 PF07715 TonB-dependent Receptor Plug Domain XSP_003186 PF00593 TonB dependent receptor XSP_003187 PF12833 Helix-turn-helix domain XSP_003188 PF18500 CadC C-terminal domain 1 XSP_003188 PF00486 Transcriptional regulatory protein, C terminal XSP_003189 PF01964 Radical SAM ThiC family XSP_003189 PF13667 ThiC-associated domain XSP_003190 PF07676 WD40-like Beta Propeller Repeat XSP_003190 PF00326 Prolyl oligopeptidase family XSP_003191 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003191 PF00672 HAMP domain XSP_003191 PF02743 Cache domain XSP_003193 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XSP_003193 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XSP_003194 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XSP_003194 PF00205 Thiamine pyrophosphate enzyme, central domain XSP_003194 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XSP_003196 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003197 PF08502 LeuA allosteric (dimerisation) domain XSP_003197 PF00682 HMGL-like XSP_003198 PF00180 Isocitrate/isopropylmalate dehydrogenase XSP_003199 PF00694 Aconitase C-terminal domain XSP_003200 PF00330 Aconitase family (aconitate hydratase) XSP_003201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003202 PF00990 Diguanylate cyclase, GGDEF domain XSP_003202 PF17151 Periplasmic sensor domain XSP_003205 PF02321 Outer membrane efflux protein XSP_003207 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XSP_003208 PF03279 Bacterial lipid A biosynthesis acyltransferase XSP_003213 PF00390 Malic enzyme, N-terminal domain XSP_003213 PF03949 Malic enzyme, NAD binding domain XSP_003213 PF01515 Phosphate acetyl/butaryl transferase XSP_003214 PF00375 Sodium:dicarboxylate symporter family XSP_003216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003216 PF00512 His Kinase A (phospho-acceptor) domain XSP_003218 PF07715 TonB-dependent Receptor Plug Domain XSP_003218 PF00593 TonB dependent receptor XSP_003219 PF00248 Aldo/keto reductase family XSP_003220 PF00072 Response regulator receiver domain XSP_003220 PF00196 Bacterial regulatory proteins, luxR family XSP_003222 PF08521 Two-component sensor kinase N-terminal XSP_003222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003222 PF00512 His Kinase A (phospho-acceptor) domain XSP_003223 PF00486 Transcriptional regulatory protein, C terminal XSP_003223 PF00072 Response regulator receiver domain XSP_003225 PF03600 Citrate transporter XSP_003226 PF00106 short chain dehydrogenase XSP_003227 PF00356 Bacterial regulatory proteins, lacI family XSP_003230 PF00128 Alpha amylase, catalytic domain XSP_003234 PF03193 RsgA GTPase XSP_003239 PF00593 TonB dependent receptor XSP_003239 PF07715 TonB-dependent Receptor Plug Domain XSP_003240 PF01522 Polysaccharide deacetylase XSP_003241 PF00462 Glutaredoxin XSP_003244 PF01979 Amidohydrolase family XSP_003245 PF01979 Amidohydrolase family XSP_003250 PF02645 Uncharacterised protein, DegV family COG1307 XSP_003252 PF00586 AIR synthase related protein, N-terminal domain XSP_003252 PF02769 AIR synthase related protein, C-terminal domain XSP_003253 PF01029 NusB family XSP_003254 PF00885 6,7-dimethyl-8-ribityllumazine synthase XSP_003255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XSP_003255 PF00925 GTP cyclohydrolase II XSP_003256 PF00677 Lumazine binding domain XSP_003258 PF01872 RibD C-terminal domain XSP_003258 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XSP_003260 PF03477 ATP cone domain XSP_003261 PF00464 Serine hydroxymethyltransferase XSP_003263 PF12848 ABC transporter XSP_003263 PF00005 ABC transporter XSP_003264 PF01327 Polypeptide deformylase XSP_003265 PF03960 ArsC family XSP_003268 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XSP_003268 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XSP_003275 PF07715 TonB-dependent Receptor Plug Domain XSP_003275 PF00593 TonB dependent receptor XSP_003277 PF00392 Bacterial regulatory proteins, gntR family XSP_003277 PF07702 UTRA domain XSP_003279 PF00263 Bacterial type II and III secretion system protein XSP_003279 PF03958 Bacterial type II/III secretion system short domain XSP_003281 PF10741 Type II secretion system (T2SS), protein M subtype b XSP_003282 PF05137 Fimbrial assembly protein (PilN) XSP_003283 PF03934 Type II secretion system (T2SS), protein K XSP_003285 PF07963 Prokaryotic N-terminal methylation motif XSP_003286 PF12019 Type II transport protein GspH XSP_003287 PF08334 Type II secretion system (T2SS), protein G XSP_003288 PF00482 Type II secretion system (T2SS), protein F XSP_003289 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003289 PF00437 Type II/IV secretion system protein XSP_003290 PF00082 Subtilase family XSP_003290 PF04151 Bacterial pre-peptidase C-terminal domain XSP_003291 PF05658 Head domain of trimeric autotransporter adhesin XSP_003291 PF03895 YadA-like membrane anchor domain XSP_003291 PF05662 Coiled stalk of trimeric autotransporter adhesin XSP_003291 PF13018 Extended Signal Peptide of Type V secretion system XSP_003292 PF04151 Bacterial pre-peptidase C-terminal domain XSP_003292 PF00082 Subtilase family XSP_003293 PF05662 Coiled stalk of trimeric autotransporter adhesin XSP_003293 PF03895 YadA-like membrane anchor domain XSP_003293 PF13018 Extended Signal Peptide of Type V secretion system XSP_003293 PF05658 Head domain of trimeric autotransporter adhesin XSP_003294 PF02769 AIR synthase related protein, C-terminal domain XSP_003294 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XSP_003294 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XSP_003295 PF10411 Disulfide bond isomerase protein N-terminus XSP_003295 PF13098 Thioredoxin-like domain XSP_003296 PF00589 Phage integrase family XSP_003296 PF02899 Phage integrase, N-terminal SAM-like domain XSP_003298 PF03739 Lipopolysaccharide export system permease LptF/LptG XSP_003300 PF00883 Cytosol aminopeptidase family, catalytic domain XSP_003300 PF02789 Cytosol aminopeptidase family, N-terminal domain XSP_003302 PF10458 Valyl tRNA synthetase tRNA binding arm XSP_003302 PF08264 Anticodon-binding domain of tRNA XSP_003302 PF00133 tRNA synthetases class I (I, L, M and V) XSP_003303 PF00544 Pectate lyase XSP_003306 PF01066 CDP-alcohol phosphatidyltransferase XSP_003308 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XSP_003308 PF04073 Aminoacyl-tRNA editing domain XSP_003308 PF03129 Anticodon binding domain XSP_003311 PF02405 Permease MlaE XSP_003312 PF00005 ABC transporter XSP_003313 PF03886 ABC-type transport auxiliary lipoprotein component XSP_003313 PF02470 MlaD protein XSP_003317 PF05045 Rhamnan synthesis protein F XSP_003317 PF14307 Glycosyltransferase WbsX XSP_003318 PF01144 Coenzyme A transferase XSP_003319 PF01144 Coenzyme A transferase XSP_003320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_003320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_003320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_003320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_003321 PF00483 Nucleotidyl transferase XSP_003321 PF01050 Mannose-6-phosphate isomerase XSP_003322 PF04321 RmlD substrate binding domain XSP_003323 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XSP_003324 PF00483 Nucleotidyl transferase XSP_003325 PF16363 GDP-mannose 4,6 dehydratase XSP_003326 PF01012 Electron transfer flavoprotein domain XSP_003327 PF01012 Electron transfer flavoprotein domain XSP_003327 PF00766 Electron transfer flavoprotein FAD-binding domain XSP_003329 PF00535 Glycosyl transferase family 2 XSP_003332 PF01370 NAD dependent epimerase/dehydratase family XSP_003333 PF16363 GDP-mannose 4,6 dehydratase XSP_003336 PF13439 Glycosyltransferase Family 4 XSP_003336 PF00534 Glycosyl transferases group 1 XSP_003337 PF00069 Protein kinase domain XSP_003337 PF13847 Methyltransferase domain XSP_003338 PF00005 ABC transporter XSP_003341 PF01053 Cys/Met metabolism PLP-dependent enzyme XSP_003342 PF00291 Pyridoxal-phosphate dependent enzyme XSP_003342 PF00571 CBS domain XSP_003346 PF00437 Type II/IV secretion system protein XSP_003347 PF02798 Glutathione S-transferase, N-terminal domain XSP_003347 PF14497 Glutathione S-transferase, C-terminal domain XSP_003350 PF00270 DEAD/DEAH box helicase XSP_003350 PF00271 Helicase conserved C-terminal domain XSP_003352 PF07715 TonB-dependent Receptor Plug Domain XSP_003352 PF00593 TonB dependent receptor XSP_003353 PF01242 6-pyruvoyl tetrahydropterin synthase XSP_003356 PF13185 GAF domain XSP_003358 PF00756 Putative esterase XSP_003359 PF07715 TonB-dependent Receptor Plug Domain XSP_003359 PF00593 TonB dependent receptor XSP_003360 PF13419 Haloacid dehalogenase-like hydrolase XSP_003361 PF00817 impB/mucB/samB family XSP_003361 PF11799 impB/mucB/samB family C-terminal domain XSP_003362 PF07977 FabA-like domain XSP_003363 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003363 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003364 PF01432 Peptidase family M3 XSP_003367 PF07732 Multicopper oxidase XSP_003367 PF00394 Multicopper oxidase XSP_003367 PF07731 Multicopper oxidase XSP_003368 PF05275 Copper resistance protein B precursor (CopB) XSP_003369 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XSP_003371 PF01380 SIS domain XSP_003372 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003373 PF00005 ABC transporter XSP_003374 PF02687 FtsX-like permease family XSP_003374 PF12704 MacB-like periplasmic core domain XSP_003375 PF12704 MacB-like periplasmic core domain XSP_003375 PF02687 FtsX-like permease family XSP_003375 PF00005 ABC transporter XSP_003376 PF00005 ABC transporter XSP_003376 PF02687 FtsX-like permease family XSP_003376 PF12704 MacB-like periplasmic core domain XSP_003377 PF12704 MacB-like periplasmic core domain XSP_003377 PF00005 ABC transporter XSP_003377 PF02687 FtsX-like permease family XSP_003378 PF02954 Bacterial regulatory protein, Fis family XSP_003378 PF00072 Response regulator receiver domain XSP_003378 PF00158 Sigma-54 interaction domain XSP_003379 PF00512 His Kinase A (phospho-acceptor) domain XSP_003379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003381 PF14602 Hexapeptide repeat of succinyl-transferase XSP_003381 PF12804 MobA-like NTP transferase domain XSP_003381 PF00132 Bacterial transferase hexapeptide (six repeats) XSP_003383 PF01817 Chorismate mutase type II XSP_003384 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XSP_003385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003385 PF02874 ATP synthase alpha/beta family, beta-barrel domain XSP_003386 PF00231 ATP synthase XSP_003387 PF00306 ATP synthase alpha/beta chain, C terminal domain XSP_003387 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003387 PF02874 ATP synthase alpha/beta family, beta-barrel domain XSP_003388 PF00213 ATP synthase delta (OSCP) subunit XSP_003389 PF00430 ATP synthase B/B' CF(0) XSP_003390 PF00137 ATP synthase subunit C XSP_003391 PF00119 ATP synthase A chain XSP_003395 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XSP_003397 PF00364 Biotin-requiring enzyme XSP_003397 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XSP_003397 PF02817 e3 binding domain XSP_003403 PF03180 NLPA lipoprotein XSP_003404 PF00528 Binding-protein-dependent transport system inner membrane component XSP_003405 PF09383 NIL domain XSP_003405 PF00005 ABC transporter XSP_003406 PF00892 EamA-like transporter family XSP_003407 PF04461 Protein of unknown function (DUF520) XSP_003409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003409 PF00512 His Kinase A (phospho-acceptor) domain XSP_003409 PF09308 LuxQ, periplasmic XSP_003409 PF00072 Response regulator receiver domain XSP_003413 PF00849 RNA pseudouridylate synthase XSP_003413 PF01479 S4 domain XSP_003414 PF05175 Methyltransferase small domain XSP_003414 PF08468 Methyltransferase small domain N-terminal XSP_003416 PF07995 Glucose / Sorbosone dehydrogenase XSP_003418 PF00512 His Kinase A (phospho-acceptor) domain XSP_003418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003422 PF01168 Alanine racemase, N-terminal domain XSP_003422 PF00842 Alanine racemase, C-terminal domain XSP_003423 PF01266 FAD dependent oxidoreductase XSP_003424 PF01037 Lrp/AsnC ligand binding domain XSP_003426 PF01641 SelR domain XSP_003427 PF01618 MotA/TolQ/ExbB proton channel family XSP_003428 PF00691 OmpA family XSP_003428 PF13677 Membrane MotB of proton-channel complex MotA/MotB XSP_003433 PF01061 ABC-2 type transporter XSP_003434 PF00005 ABC transporter XSP_003435 PF00999 Sodium/hydrogen exchanger family XSP_003437 PF02469 Fasciclin domain XSP_003438 PF03167 Uracil DNA glycosylase superfamily XSP_003440 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_003442 PF03466 LysR substrate binding domain XSP_003442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003443 PF03358 NADPH-dependent FMN reductase XSP_003444 PF00248 Aldo/keto reductase family XSP_003446 PF05649 Peptidase family M13 XSP_003446 PF01431 Peptidase family M13 XSP_003449 PF13520 Amino acid permease XSP_003451 PF00072 Response regulator receiver domain XSP_003451 PF04397 LytTr DNA-binding domain XSP_003452 PF06580 Histidine kinase XSP_003452 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003452 PF00672 HAMP domain XSP_003452 PF02743 Cache domain XSP_003455 PF05974 Domain of unknown function (DUF892) XSP_003456 PF05067 Manganese containing catalase XSP_003458 PF01339 CheB methylesterase XSP_003458 PF01739 CheR methyltransferase, SAM binding domain XSP_003458 PF03705 CheR methyltransferase, all-alpha domain XSP_003458 PF08448 PAS fold XSP_003461 PF00158 Sigma-54 interaction domain XSP_003461 PF00072 Response regulator receiver domain XSP_003461 PF02954 Bacterial regulatory protein, Fis family XSP_003464 PF16363 GDP-mannose 4,6 dehydratase XSP_003466 PF03275 UDP-galactopyranose mutase XSP_003468 PF00664 ABC transporter transmembrane region XSP_003468 PF00005 ABC transporter XSP_003470 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003470 PF00107 Zinc-binding dehydrogenase XSP_003470 PF13823 Alcohol dehydrogenase GroES-associated XSP_003480 PF07715 TonB-dependent Receptor Plug Domain XSP_003480 PF00593 TonB dependent receptor XSP_003483 PF00005 ABC transporter XSP_003487 PF02203 Tar ligand binding domain homologue XSP_003487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003487 PF00672 HAMP domain XSP_003494 PF00916 Sulfate permease family XSP_003494 PF01740 STAS domain XSP_003495 PF00654 Voltage gated chloride channel XSP_003496 PF00557 Metallopeptidase family M24 XSP_003498 PF07690 Major Facilitator Superfamily XSP_003499 PF00440 Bacterial regulatory proteins, tetR family XSP_003500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003500 PF03466 LysR substrate binding domain XSP_003501 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XSP_003502 PF16859 Tetracyclin repressor-like, C-terminal domain XSP_003502 PF00440 Bacterial regulatory proteins, tetR family XSP_003503 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003512 PF01047 MarR family XSP_003514 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term XSP_003514 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XSP_003515 PF14765 Polyketide synthase dehydratase XSP_003515 PF00550 Phosphopantetheine attachment site XSP_003515 PF00698 Acyl transferase domain XSP_003515 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003515 PF00107 Zinc-binding dehydrogenase XSP_003515 PF16197 Ketoacyl-synthetase C-terminal extension XSP_003515 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003515 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003515 PF08659 KR domain XSP_003535 PF02463 RecF/RecN/SMC N terminal domain XSP_003537 PF18273 Type III R-M EcoP15I C-terminal domain XSP_003537 PF01555 DNA methylase XSP_003538 PF00580 UvrD/REP helicase N-terminal domain XSP_003538 PF12462 DNA helicase IV / RNA helicase N terminal XSP_003538 PF13361 UvrD-like helicase C-terminal domain XSP_003546 PF13148 Protein of unknown function (DUF3987) XSP_003547 PF03389 MobA/MobL family XSP_003547 PF16793 RepB DNA-primase from phage plasmid XSP_003553 PF04002 RadC-like JAB domain XSP_003557 PF02203 Tar ligand binding domain homologue XSP_003557 PF00672 HAMP domain XSP_003557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XSP_003558 PF00440 Bacterial regulatory proteins, tetR family XSP_003565 PF07690 Major Facilitator Superfamily XSP_003566 PF01926 50S ribosome-binding GTPase XSP_003568 PF01926 50S ribosome-binding GTPase XSP_003569 PF12146 Serine aminopeptidase, S33 XSP_003570 PF00108 Thiolase, N-terminal domain XSP_003570 PF02803 Thiolase, C-terminal domain XSP_003571 PF01144 Coenzyme A transferase XSP_003572 PF01144 Coenzyme A transferase XSP_003573 PF01494 FAD binding domain XSP_003574 PF00775 Dioxygenase XSP_003574 PF04444 Catechol dioxygenase N terminus XSP_003575 PF02426 Muconolactone delta-isomerase XSP_003576 PF13378 Enolase C-terminal domain-like XSP_003576 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003578 PF00171 Aldehyde dehydrogenase family XSP_003579 PF00107 Zinc-binding dehydrogenase XSP_003579 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003580 PF03466 LysR substrate binding domain XSP_003581 PF00106 short chain dehydrogenase XSP_003582 PF00135 Carboxylesterase family XSP_003583 PF00232 Glycosyl hydrolase family 1 XSP_003584 PF04828 Glutathione-dependent formaldehyde-activating enzyme XSP_003585 PF08240 Alcohol dehydrogenase GroES-like domain XSP_003585 PF00107 Zinc-binding dehydrogenase XSP_003588 PF01361 Tautomerase enzyme XSP_003589 PF12697 Alpha/beta hydrolase family XSP_003590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XSP_003590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XSP_003591 PF03466 LysR substrate binding domain XSP_003591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003594 PF07690 Major Facilitator Superfamily XSP_003595 PF05193 Peptidase M16 inactive domain XSP_003595 PF00675 Insulinase (Peptidase family M16) XSP_003596 PF00593 TonB dependent receptor XSP_003596 PF07715 TonB-dependent Receptor Plug Domain XSP_003600 PF02472 Biopolymer transport protein ExbD/TolR XSP_003601 PF01618 MotA/TolQ/ExbB proton channel family XSP_003602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003602 PF03466 LysR substrate binding domain XSP_003605 PF07681 DoxX XSP_003606 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XSP_003608 PF00072 Response regulator receiver domain XSP_003608 PF00486 Transcriptional regulatory protein, C terminal XSP_003609 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003609 PF00512 His Kinase A (phospho-acceptor) domain XSP_003610 PF02321 Outer membrane efflux protein XSP_003612 PF00873 AcrB/AcrD/AcrF family XSP_003613 PF06629 MltA-interacting protein MipA XSP_003614 PF04333 MlaA lipoprotein XSP_003617 PF00753 Metallo-beta-lactamase superfamily XSP_003618 PF04143 Sulphur transport XSP_003620 PF01925 Sulfite exporter TauE/SafE XSP_003626 PF00512 His Kinase A (phospho-acceptor) domain XSP_003626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003627 PF00072 Response regulator receiver domain XSP_003627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003627 PF13426 PAS domain XSP_003633 PF00873 AcrB/AcrD/AcrF family XSP_003634 PF01545 Cation efflux family XSP_003635 PF00884 Sulfatase XSP_003635 PF08019 Phosphoethanolamine transferase EptA/EptB XSP_003637 PF00589 Phage integrase family XSP_003637 PF13356 Arm DNA-binding domain XSP_003640 PF04542 Sigma-70 region 2 XSP_003640 PF04539 Sigma-70 region 3 XSP_003640 PF04545 Sigma-70, region 4 XSP_003640 PF03979 Sigma-70 factor, region 1.1 XSP_003640 PF00140 Sigma-70 factor, region 1.2 XSP_003640 PF04546 Sigma-70, non-essential region XSP_003641 PF02580 D-Tyr-tRNA(Tyr) deacylase XSP_003644 PF00925 GTP cyclohydrolase II XSP_003648 PF00535 Glycosyl transferase family 2 XSP_003651 PF01029 NusB family XSP_003651 PF01189 16S rRNA methyltransferase RsmB/F XSP_003652 PF02911 Formyl transferase, C-terminal domain XSP_003652 PF00551 Formyl transferase XSP_003653 PF01327 Polypeptide deformylase XSP_003654 PF01476 LysM domain XSP_003655 PF02481 DNA recombination-mediator protein A XSP_003655 PF17782 DprA winged helix domain XSP_003656 PF04361 Protein of unknown function (DUF494) XSP_003657 PF00114 Pilin (bacterial filament) XSP_003657 PF07963 Prokaryotic N-terminal methylation motif XSP_003659 PF01131 DNA topoisomerase XSP_003659 PF01751 Toprim domain XSP_003659 PF13368 Topoisomerase C-terminal repeat XSP_003660 PF01300 Telomere recombination XSP_003665 PF01343 Peptidase family S49 XSP_003666 PF01554 MatE XSP_003669 PF18074 Primosomal protein N C-terminal domain XSP_003669 PF17764 3′ DNA-binding domain (3′BD) XSP_003669 PF00270 DEAD/DEAH box helicase XSP_003669 PF00271 Helicase conserved C-terminal domain XSP_003669 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XSP_003670 PF00043 Glutathione S-transferase, C-terminal domain XSP_003670 PF13417 Glutathione S-transferase, N-terminal domain XSP_003673 PF07992 Pyridine nucleotide-disulphide oxidoreductase XSP_003674 PF03458 UPF0126 domain XSP_003675 PF04545 Sigma-70, region 4 XSP_003675 PF04542 Sigma-70 region 2 XSP_003676 PF03167 Uracil DNA glycosylase superfamily XSP_003677 PF00072 Response regulator receiver domain XSP_003677 PF01339 CheB methylesterase XSP_003678 PF18075 FtsX extracellular domain XSP_003679 PF00005 ABC transporter XSP_003680 PF00271 Helicase conserved C-terminal domain XSP_003680 PF12300 ATP-dependent RNA helicase RhlB XSP_003680 PF00270 DEAD/DEAH box helicase XSP_003681 PF00085 Thioredoxin XSP_003682 PF07497 Rho termination factor, RNA-binding domain XSP_003682 PF07498 Rho termination factor, N-terminal domain XSP_003682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XSP_003683 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XSP_003684 PF03971 Monomeric isocitrate dehydrogenase XSP_003686 PF04972 BON domain XSP_003686 PF01476 LysM domain XSP_003687 PF14489 QueF-like protein XSP_003687 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XSP_003688 PF01546 Peptidase family M20/M25/M40 XSP_003688 PF07687 Peptidase dimerisation domain XSP_003689 PF13533 Biotin-lipoyl like XSP_003690 PF00873 AcrB/AcrD/AcrF family XSP_003691 PF00873 AcrB/AcrD/AcrF family XSP_003692 PF07063 Domain of unknown function (DUF1338) XSP_003700 PF01427 D-ala-D-ala dipeptidase XSP_003704 PF01510 N-acetylmuramoyl-L-alanine amidase XSP_003706 PF13378 Enolase C-terminal domain-like XSP_003706 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003708 PF13520 Amino acid permease XSP_003711 PF07995 Glucose / Sorbosone dehydrogenase XSP_003712 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_003712 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_003712 PF14310 Fibronectin type III-like domain XSP_003713 PF02152 Dihydroneopterin aldolase XSP_003714 PF00814 Glycoprotease family XSP_003715 PF01165 Ribosomal protein S21 XSP_003716 PF09424 Yqey-like protein XSP_003717 PF03631 Virulence factor BrkB XSP_003718 PF08275 DNA primase catalytic core, N-terminal domain XSP_003718 PF08278 DNA primase DnaG DnaB-binding XSP_003718 PF10410 DnaB-helicase binding domain of primase XSP_003718 PF01807 CHC2 zinc finger XSP_003719 PF13593 SBF-like CPA transporter family (DUF4137) XSP_003721 PF01040 UbiA prenyltransferase family XSP_003726 PF00510 Cytochrome c oxidase subunit III XSP_003727 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 XSP_003729 PF00115 Cytochrome C and Quinol oxidase polypeptide I XSP_003730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain XSP_003730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XSP_003732 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XSP_003732 PF14850 DNA-binding domain of Proline dehydrogenase XSP_003732 PF00171 Aldehyde dehydrogenase family XSP_003732 PF01619 Proline dehydrogenase XSP_003738 PF00579 tRNA synthetases class I (W and Y) XSP_003739 PF04225 Opacity-associated protein A LysM-like domain XSP_003739 PF01551 Peptidase family M23 XSP_003740 PF03702 Anhydro-N-acetylmuramic acid kinase XSP_003742 PF07690 Major Facilitator Superfamily XSP_003743 PF03372 Endonuclease/Exonuclease/phosphatase family XSP_003744 PF00156 Phosphoribosyl transferase domain XSP_003746 PF13614 AAA domain XSP_003747 PF17762 HTH domain found in ParB protein XSP_003747 PF02195 ParB-like nuclease domain XSP_003750 PF01370 NAD dependent epimerase/dehydratase family XSP_003751 PF00535 Glycosyl transferase family 2 XSP_003754 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XSP_003754 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XSP_003754 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XSP_003754 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XSP_003755 PF00692 dUTPase XSP_003756 PF04127 DNA / pantothenate metabolism flavoprotein XSP_003756 PF02441 Flavoprotein XSP_003757 PF04002 RadC-like JAB domain XSP_003758 PF03485 Arginyl tRNA synthetase N terminal domain XSP_003758 PF00750 tRNA synthetases class I (R) XSP_003758 PF05746 DALR anticodon binding domain XSP_003761 PF00106 short chain dehydrogenase XSP_003762 PF01757 Acyltransferase family XSP_003763 PF03033 Glycosyltransferase family 28 N-terminal domain XSP_003764 PF13193 AMP-binding enzyme C-terminal domain XSP_003764 PF00668 Condensation domain XSP_003764 PF00550 Phosphopantetheine attachment site XSP_003764 PF00975 Thioesterase domain XSP_003764 PF00501 AMP-binding enzyme XSP_003766 PF17944 Arginine decarboxylase C-terminal helical extension XSP_003766 PF17810 Arginine decarboxylase helical bundle domain XSP_003766 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XSP_003767 PF17284 Spermidine synthase tetramerisation domain XSP_003772 PF00543 Nitrogen regulatory protein P-II XSP_003773 PF04380 Membrane fusogenic activity XSP_003774 PF13335 Magnesium chelatase, subunit ChlI C-terminal XSP_003774 PF01078 Magnesium chelatase, subunit ChlI XSP_003777 PF12792 CSS motif domain associated with EAL XSP_003777 PF00563 EAL domain XSP_003778 PF00487 Fatty acid desaturase XSP_003779 PF00175 Oxidoreductase NAD-binding domain XSP_003779 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_003779 PF00970 Oxidoreductase FAD-binding domain XSP_003780 PF00440 Bacterial regulatory proteins, tetR family XSP_003788 PF08338 Domain of unknown function (DUF1731) XSP_003788 PF01370 NAD dependent epimerase/dehydratase family XSP_003789 PF00072 Response regulator receiver domain XSP_003789 PF00486 Transcriptional regulatory protein, C terminal XSP_003790 PF00512 His Kinase A (phospho-acceptor) domain XSP_003790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003790 PF08521 Two-component sensor kinase N-terminal XSP_003794 PF13180 PDZ domain XSP_003794 PF00595 PDZ domain XSP_003798 PF01594 AI-2E family transporter XSP_003799 PF13419 Haloacid dehalogenase-like hydrolase XSP_003800 PF02789 Cytosol aminopeptidase family, N-terminal domain XSP_003800 PF00883 Cytosol aminopeptidase family, catalytic domain XSP_003805 PF00072 Response regulator receiver domain XSP_003805 PF00196 Bacterial regulatory proteins, luxR family XSP_003806 PF07730 Histidine kinase XSP_003807 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003808 PF00005 ABC transporter XSP_003812 PF00892 EamA-like transporter family XSP_003813 PF00892 EamA-like transporter family XSP_003816 PF00753 Metallo-beta-lactamase superfamily XSP_003817 PF00579 tRNA synthetases class I (W and Y) XSP_003818 PF05532 CsbD-like XSP_003821 PF00491 Arginase family XSP_003826 PF02223 Thymidylate kinase XSP_003829 PF03309 Type III pantothenate kinase XSP_003830 PF08279 HTH domain XSP_003830 PF03099 Biotin/lipoate A/B protein ligase family XSP_003830 PF02237 Biotin protein ligase C terminal domain XSP_003832 PF06167 Glucose-regulated metallo-peptidase M90 XSP_003835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003835 PF00512 His Kinase A (phospho-acceptor) domain XSP_003835 PF00672 HAMP domain XSP_003836 PF00072 Response regulator receiver domain XSP_003836 PF00486 Transcriptional regulatory protein, C terminal XSP_003838 PF01207 Dihydrouridine synthase (Dus) XSP_003841 PF06628 Catalase-related immune-responsive XSP_003841 PF00199 Catalase XSP_003845 PF06733 DEAD_2 XSP_003845 PF13307 Helicase C-terminal domain XSP_003848 PF01488 Shikimate / quinate 5-dehydrogenase XSP_003848 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XSP_003848 PF08501 Shikimate dehydrogenase substrate binding domain XSP_003850 PF00175 Oxidoreductase NAD-binding domain XSP_003850 PF00258 Flavodoxin XSP_003850 PF00667 FAD binding domain XSP_003851 PF00490 Delta-aminolevulinic acid dehydratase XSP_003855 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XSP_003855 PF00326 Prolyl oligopeptidase family XSP_003856 PF00043 Glutathione S-transferase, C-terminal domain XSP_003856 PF02798 Glutathione S-transferase, N-terminal domain XSP_003860 PF04820 Tryptophan halogenase XSP_003863 PF00005 ABC transporter XSP_003865 PF01381 Helix-turn-helix XSP_003867 PF01229 Glycosyl hydrolases family 39 XSP_003868 PF02583 Metal-sensitive transcriptional repressor XSP_003869 PF01545 Cation efflux family XSP_003870 PF00111 2Fe-2S iron-sulfur cluster binding domain XSP_003870 PF00175 Oxidoreductase NAD-binding domain XSP_003870 PF00970 Oxidoreductase FAD-binding domain XSP_003871 PF00005 ABC transporter XSP_003872 PF01061 ABC-2 type transporter XSP_003873 PF02558 Ketopantoate reductase PanE/ApbA XSP_003873 PF08546 Ketopantoate reductase PanE/ApbA C terminal XSP_003875 PF03061 Thioesterase superfamily XSP_003878 PF00268 Ribonucleotide reductase, small chain XSP_003879 PF03477 ATP cone domain XSP_003879 PF00317 Ribonucleotide reductase, all-alpha domain XSP_003879 PF02867 Ribonucleotide reductase, barrel domain XSP_003881 PF00583 Acetyltransferase (GNAT) family XSP_003881 PF13607 Succinyl-CoA ligase like flavodoxin domain XSP_003881 PF13380 CoA binding domain XSP_003884 PF00593 TonB dependent receptor XSP_003884 PF04886 PT repeat XSP_003884 PF07715 TonB-dependent Receptor Plug Domain XSP_003885 PF00571 CBS domain XSP_003885 PF01769 Divalent cation transporter XSP_003885 PF03448 MgtE intracellular N domain XSP_003886 PF00999 Sodium/hydrogen exchanger family XSP_003886 PF02254 TrkA-N domain XSP_003887 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XSP_003887 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XSP_003888 PF00723 Glycosyl hydrolases family 15 XSP_003891 PF05166 YcgL domain XSP_003892 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_003892 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_003895 PF04820 Tryptophan halogenase XSP_003901 PF07977 FabA-like domain XSP_003902 PF01553 Acyltransferase XSP_003904 PF00550 Phosphopantetheine attachment site XSP_003905 PF04820 Tryptophan halogenase XSP_003912 PF01218 Coproporphyrinogen III oxidase XSP_003913 PF01367 5'-3' exonuclease, C-terminal SAM fold XSP_003913 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XSP_003913 PF00476 DNA polymerase family A XSP_003913 PF01612 3'-5' exonuclease XSP_003915 PF03793 PASTA domain XSP_003915 PF00069 Protein kinase domain XSP_003919 PF14602 Hexapeptide repeat of succinyl-transferase XSP_003919 PF12464 Maltose acetyltransferase XSP_003920 PF13361 UvrD-like helicase C-terminal domain XSP_003920 PF00580 UvrD/REP helicase N-terminal domain XSP_003922 PF13091 PLD-like domain XSP_003922 PF13396 Phospholipase_D-nuclease N-terminal XSP_003923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_003924 PF03737 Aldolase/RraA XSP_003925 PF04303 PrpF protein XSP_003926 PF04909 Amidohydrolase XSP_003927 PF00471 Ribosomal protein L33 XSP_003928 PF00830 Ribosomal L28 family XSP_003929 PF00873 AcrB/AcrD/AcrF family XSP_003930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_003934 PF02527 rRNA small subunit methyltransferase G XSP_003936 PF16655 PhoD-like phosphatase, N-terminal domain XSP_003936 PF09423 PhoD-like phosphatase XSP_003937 PF09423 PhoD-like phosphatase XSP_003937 PF16655 PhoD-like phosphatase, N-terminal domain XSP_003938 PF01648 4'-phosphopantetheinyl transferase superfamily XSP_003939 PF04226 Transglycosylase associated protein XSP_003944 PF00480 ROK family XSP_003946 PF00639 PPIC-type PPIASE domain XSP_003946 PF09312 SurA N-terminal domain XSP_003948 PF00474 Sodium:solute symporter family XSP_003951 PF00501 AMP-binding enzyme XSP_003951 PF16177 Acetyl-coenzyme A synthetase N-terminus XSP_003951 PF13193 AMP-binding enzyme C-terminal domain XSP_003952 PF00196 Bacterial regulatory proteins, luxR family XSP_003952 PF00072 Response regulator receiver domain XSP_003957 PF00248 Aldo/keto reductase family XSP_003960 PF01557 Fumarylacetoacetate (FAA) hydrolase family XSP_003961 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003961 PF13378 Enolase C-terminal domain-like XSP_003962 PF05336 L-rhamnose mutarotase XSP_003963 PF07690 Major Facilitator Superfamily XSP_003964 PF01614 Bacterial transcriptional regulator XSP_003964 PF09339 IclR helix-turn-helix domain XSP_003965 PF02659 Putative manganese efflux pump XSP_003966 PF02659 Putative manganese efflux pump XSP_003967 PF02659 Putative manganese efflux pump XSP_003968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_003968 PF00512 His Kinase A (phospho-acceptor) domain XSP_003969 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain XSP_003969 PF06165 Glycosyltransferase family 36 XSP_003972 PF13360 PQQ-like domain XSP_003972 PF01011 PQQ enzyme repeat XSP_003972 PF13570 PQQ-like domain XSP_003976 PF04357 TamB, inner membrane protein subunit of TAM complex XSP_003977 PF01103 Surface antigen XSP_003977 PF17243 POTRA domain TamA domain 1 XSP_003978 PF00593 TonB dependent receptor XSP_003978 PF07715 TonB-dependent Receptor Plug Domain XSP_003979 PF13181 Tetratricopeptide repeat XSP_003980 PF05746 DALR anticodon binding domain XSP_003980 PF02092 Glycyl-tRNA synthetase beta subunit XSP_003981 PF02091 Glycyl-tRNA synthetase alpha subunit XSP_003982 PF00437 Type II/IV secretion system protein XSP_003982 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XSP_003983 PF00958 GMP synthase C terminal domain XSP_003983 PF00117 Glutamine amidotransferase class-I XSP_003985 PF00902 Sec-independent protein translocase protein (TatC) XSP_003986 PF02416 mttA/Hcf106 family XSP_003987 PF02416 mttA/Hcf106 family XSP_003989 PF00762 Ferrochelatase XSP_003990 PF12697 Alpha/beta hydrolase family XSP_003992 PF04381 Putative exonuclease, RdgC XSP_003993 PF01171 PP-loop family XSP_003995 PF00356 Bacterial regulatory proteins, lacI family XSP_003996 PF07488 Glycosyl hydrolase family 67 middle domain XSP_003996 PF07477 Glycosyl hydrolase family 67 C-terminus XSP_003996 PF03648 Glycosyl hydrolase family 67 N-terminus XSP_003998 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XSP_003998 PF13378 Enolase C-terminal domain-like XSP_004000 PF07691 PA14 domain XSP_004000 PF01915 Glycosyl hydrolase family 3 C-terminal domain XSP_004000 PF00933 Glycosyl hydrolase family 3 N terminal domain XSP_004000 PF14310 Fibronectin type III-like domain XSP_004001 PF08125 Mannitol dehydrogenase C-terminal domain XSP_004001 PF01232 Mannitol dehydrogenase Rossmann domain XSP_004006 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XSP_004006 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XSP_004007 PF02652 L-lactate permease XSP_004011 PF08450 SMP-30/Gluconolactonase/LRE-like region XSP_004012 PF00331 Glycosyl hydrolase family 10 XSP_004013 PF02837 Glycosyl hydrolases family 2, sugar binding domain XSP_004013 PF00703 Glycosyl hydrolases family 2 XSP_004013 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 XSP_004013 PF16355 Domain of unknown function (DUF4982) XSP_004013 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XSP_004014 PF02614 Glucuronate isomerase XSP_004015 PF00331 Glycosyl hydrolase family 10 XSP_004015 PF03422 Carbohydrate binding module (family 6) XSP_004015 PF00553 Cellulose binding domain XSP_004019 PF04616 Glycosyl hydrolases family 43 XSP_004023 PF00107 Zinc-binding dehydrogenase XSP_004023 PF00698 Acyl transferase domain XSP_004023 PF02801 Beta-ketoacyl synthase, C-terminal domain XSP_004023 PF08659 KR domain XSP_004023 PF00550 Phosphopantetheine attachment site XSP_004023 PF14765 Polyketide synthase dehydratase XSP_004023 PF16197 Ketoacyl-synthetase C-terminal extension XSP_004023 PF00109 Beta-ketoacyl synthase, N-terminal domain XSP_004023 PF08240 Alcohol dehydrogenase GroES-like domain XSP_004024 PF01553 Acyltransferase XSP_004026 PF00356 Bacterial regulatory proteins, lacI family XSP_004029 PF04820 Tryptophan halogenase XSP_004030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XSP_004031 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XSP_004032 PF04337 Protein of unknown function, DUF480 XSP_004035 PF13302 Acetyltransferase (GNAT) domain XSP_004036 PF00580 UvrD/REP helicase N-terminal domain XSP_004036 PF13361 UvrD-like helicase C-terminal domain XSP_004037 PF00265 Thymidine kinase XSP_004038 PF08446 PAS fold XSP_004038 PF00512 His Kinase A (phospho-acceptor) domain XSP_004038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XSP_004038 PF01590 GAF domain XSP_004038 PF00360 Phytochrome region XSP_004039 PF04349 Periplasmic glucan biosynthesis protein, MdoG XSP_004041 PF06827 Zinc finger found in FPG and IleRS XSP_004041 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XSP_004041 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XSP_004047 PF03594 Benzoate membrane transport protein XSP_004049 PF01590 GAF domain XSP_004049 PF13426 PAS domain XSP_004049 PF08446 PAS fold XSP_004049 PF00360 Phytochrome region XSP_004050 PF01126 Heme oxygenase XSP_004051 PF07690 Major Facilitator Superfamily XSP_004052 PF01263 Aldose 1-epimerase XSP_004054 PF02810 SEC-C motif XSP_004055 PF01925 Sulfite exporter TauE/SafE XSP_004056 PF07715 TonB-dependent Receptor Plug Domain XSP_004056 PF00593 TonB dependent receptor XSP_004060 PF01227 GTP cyclohydrolase I XSP_004062 PF07869 Protein of unknown function (DUF1656) XSP_004063 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XSP_004063 PF00529 HlyD membrane-fusion protein of T1SS XSP_004064 PF02321 Outer membrane efflux protein XSP_004065 PF04632 Fusaric acid resistance protein family XSP_004066 PF00083 Sugar (and other) transporter XSP_004067 PF03466 LysR substrate binding domain XSP_004067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_004069 PF13396 Phospholipase_D-nuclease N-terminal XSP_004069 PF13091 PLD-like domain XSP_004074 PF01850 PIN domain XSP_004081 PF00849 RNA pseudouridylate synthase XSP_004084 PF09386 Antitoxin ParD XSP_004085 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XSP_004086 PF01381 Helix-turn-helix XSP_004088 PF13538 UvrD-like helicase C-terminal domain XSP_004089 PF00580 UvrD/REP helicase N-terminal domain XSP_004089 PF12705 PD-(D/E)XK nuclease superfamily XSP_004089 PF13361 UvrD-like helicase C-terminal domain XSP_004090 PF17946 RecC C-terminal domain XSP_004095 PF00583 Acetyltransferase (GNAT) family XSP_004097 PF00005 ABC transporter XSP_004098 PF02405 Permease MlaE XSP_004099 PF02470 MlaD protein XSP_004100 PF05494 MlaC protein XSP_004102 PF04333 MlaA lipoprotein XSP_004104 PF00255 Glutathione peroxidase XSP_004106 PF02646 RmuC family XSP_004107 PF00107 Zinc-binding dehydrogenase XSP_004107 PF08240 Alcohol dehydrogenase GroES-like domain XSP_004108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XSP_004108 PF03466 LysR substrate binding domain XSP_004109 PF00043 Glutathione S-transferase, C-terminal domain XSP_004109 PF13417 Glutathione S-transferase, N-terminal domain XSP_004111 PF13520 Amino acid permease XSP_004112 PF07971 Glycosyl hydrolase family 92 XSP_004112 PF17678 Glycosyl hydrolase family 92 N-terminal domain XSP_004114 PF00990 Diguanylate cyclase, GGDEF domain XSP_004115 PF17853 GGDEF-like domain XSP_004115 PF05651 Putative sugar diacid recognition XSP_004115 PF13556 PucR C-terminal helix-turn-helix domain XSP_004116 PF02595 Glycerate kinase family XSP_004117 PF07690 Major Facilitator Superfamily XSP_004120 PF01804 Penicillin amidase XSP_004121 PF07715 TonB-dependent Receptor Plug Domain XSP_004121 PF00593 TonB dependent receptor XSP_004125 PF10672 S-adenosylmethionine-dependent methyltransferase XSP_004125 PF17785 PUA-like domain XSP_004126 PF03741 Integral membrane protein TerC family XSP_004127 PF01694 Rhomboid family XSP_004128 PF03009 Glycerophosphoryl diester phosphodiesterase family XSP_004130 PF01569 PAP2 superfamily XSP_004131 PF00593 TonB dependent receptor XSP_004132 PF10396 GTP-binding protein TrmE N-terminus XSP_004132 PF12631 MnmE helical domain XSP_004132 PF01926 50S ribosome-binding GTPase XSP_004133 PF02096 60Kd inner membrane protein XSP_004133 PF14849 YidC periplasmic domain XSP_004134 PF00825 Ribonuclease P XSP_004135 PF00468 Ribosomal protein L34 XSP_004138 PF04610 TrbL/VirB6 plasmid conjugal transfer protein XSP_004141 PF07996 Type IV secretion system proteins XSP_004149 PF13614 AAA domain XSP_004149 PF00376 MerR family regulatory protein XSP_004154 PF00239 Resolvase, N terminal domain XSP_004154 PF02796 Helix-turn-helix domain of resolvase