locus-tag class description BJD12_00010 PF02261 Aspartate decarboxylase BJD12_00015 PF00342 Phosphoglucose isomerase BJD12_00035 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_00035 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_00035 PF14310 Fibronectin type III-like domain BJD12_00045 PF00474 Sodium:solute symporter family BJD12_00050 PF00563 EAL domain BJD12_00050 PF01590 GAF domain BJD12_00050 PF00990 Diguanylate cyclase, GGDEF domain BJD12_00050 PF00360 Phytochrome region BJD12_00055 PF00150 Cellulase (glycosyl hydrolase family 5) BJD12_00055 PF02013 Cellulose or protein binding domain BJD12_00060 PF00072 Response regulator receiver domain BJD12_00070 PF04551 GcpE protein BJD12_00075 PF01569 PAP2 superfamily BJD12_00080 PF07690 Major Facilitator Superfamily BJD12_00085 PF01177 Asp/Glu/Hydantoin racemase BJD12_00090 PF00892 EamA-like transporter family BJD12_00095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BJD12_00095 PF01565 FAD binding domain BJD12_00100 PF01180 Dihydroorotate dehydrogenase BJD12_00115 PF00171 Aldehyde dehydrogenase family BJD12_00130 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) BJD12_00145 PF01527 Transposase BJD12_00150 PF13683 Integrase core domain BJD12_00150 PF13276 HTH-like domain BJD12_00205 PF04002 RadC-like JAB domain BJD12_00275 PF01527 Transposase BJD12_00280 PF00665 Integrase core domain BJD12_00280 PF13333 Integrase core domain BJD12_00280 PF13276 HTH-like domain BJD12_00340 PF03412 Peptidase C39 family BJD12_00340 PF00005 ABC transporter BJD12_00340 PF00664 ABC transporter transmembrane region BJD12_00360 PF07690 Major Facilitator Superfamily BJD12_00365 PF02794 RTX toxin acyltransferase family BJD12_00435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00435 PF00672 HAMP domain BJD12_00450 PF00535 Glycosyl transferase family 2 BJD12_00455 PF14883 Hypothetical glycosyl hydrolase family 13 BJD12_00455 PF01522 Polysaccharide deacetylase BJD12_00465 PF08479 POTRA domain, ShlB-type BJD12_00465 PF17287 POTRA domain BJD12_00465 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BJD12_00470 PF05594 Haemagluttinin repeat BJD12_00470 PF05860 haemagglutination activity domain BJD12_00470 PF13332 Hemagglutinin repeat BJD12_00470 PF13018 Extended Signal Peptide of Type V secretion system BJD12_00470 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain BJD12_00470 PF05860 haemagglutination activity domain BJD12_00470 PF13332 Hemagglutinin repeat BJD12_00470 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain BJD12_00470 PF13018 Extended Signal Peptide of Type V secretion system BJD12_00470 PF05594 Haemagluttinin repeat BJD12_00505 PF13683 Integrase core domain BJD12_00505 PF13276 HTH-like domain BJD12_00510 PF01527 Transposase BJD12_00515 PF03073 TspO/MBR family BJD12_00525 PF03447 Homoserine dehydrogenase, NAD binding domain BJD12_00525 PF00696 Amino acid kinase family BJD12_00525 PF01842 ACT domain BJD12_00525 PF13840 ACT domain BJD12_00525 PF00742 Homoserine dehydrogenase BJD12_00530 PF00288 GHMP kinases N terminal domain BJD12_00530 PF08544 GHMP kinases C terminal BJD12_00540 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_00540 PF14821 Threonine synthase N terminus BJD12_00550 PF00027 Cyclic nucleotide-binding domain BJD12_00550 PF13545 Crp-like helix-turn-helix domain BJD12_00555 PF13393 Histidyl-tRNA synthetase BJD12_00555 PF03129 Anticodon binding domain BJD12_00565 PF01634 ATP phosphoribosyltransferase BJD12_00565 PF08029 HisG, C-terminal domain BJD12_00570 PF00815 Histidinol dehydrogenase BJD12_00575 PF00155 Aminotransferase class I and II BJD12_00580 PF00475 Imidazoleglycerol-phosphate dehydratase BJD12_00585 PF00117 Glutamine amidotransferase class-I BJD12_00590 PF00977 Histidine biosynthesis protein BJD12_00595 PF00977 Histidine biosynthesis protein BJD12_00600 PF01502 Phosphoribosyl-AMP cyclohydrolase BJD12_00600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BJD12_00625 PF03079 ARD/ARD' family BJD12_00630 PF00596 Class II Aldolase and Adducin N-terminal domain BJD12_00640 PF13520 Amino acid permease BJD12_00645 PF13520 Amino acid permease BJD12_00655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD12_00655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD12_00660 PF01565 FAD binding domain BJD12_00660 PF02913 FAD linked oxidases, C-terminal domain BJD12_00680 PF08207 Elongation factor P (EF-P) KOW-like domain BJD12_00680 PF01132 Elongation factor P (EF-P) OB domain BJD12_00680 PF09285 Elongation factor P, C-terminal BJD12_00685 PF00106 short chain dehydrogenase BJD12_00690 PF00682 HMGL-like BJD12_00700 PF00378 Enoyl-CoA hydratase/isomerase BJD12_00710 PF02421 Ferrous iron transport protein B BJD12_00710 PF07670 Nucleoside recognition BJD12_00710 PF07664 Ferrous iron transport protein B C terminus BJD12_00725 PF00155 Aminotransferase class I and II BJD12_00730 PF03475 3-alpha domain BJD12_00730 PF03473 MOSC domain BJD12_00735 PF05173 Dihydrodipicolinate reductase, C-terminus BJD12_00735 PF01113 Dihydrodipicolinate reductase, N-terminus BJD12_00740 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BJD12_00740 PF00117 Glutamine amidotransferase class-I BJD12_00750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD12_00750 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BJD12_00750 PF02142 MGS-like domain BJD12_00755 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD12_00755 PF03449 Transcription elongation factor, N-terminal BJD12_00765 PF01368 DHH family BJD12_00765 PF17768 RecJ OB domain BJD12_00765 PF02272 DHHA1 domain BJD12_00780 PF04397 LytTr DNA-binding domain BJD12_00780 PF00072 Response regulator receiver domain BJD12_00785 PF03462 PCRF domain BJD12_00785 PF00472 RF-1 domain BJD12_00790 PF01336 OB-fold nucleic acid binding domain BJD12_00790 PF00152 tRNA synthetases class II (D, K and N) BJD12_00795 PF00072 Response regulator receiver domain BJD12_00805 PF00512 His Kinase A (phospho-acceptor) domain BJD12_00805 PF01627 Hpt domain BJD12_00805 PF00072 Response regulator receiver domain BJD12_00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_00810 PF00378 Enoyl-CoA hydratase/isomerase BJD12_00815 PF13193 AMP-binding enzyme C-terminal domain BJD12_00815 PF00501 AMP-binding enzyme BJD12_00825 PF00330 Aconitase family (aconitate hydratase) BJD12_00825 PF00694 Aconitase C-terminal domain BJD12_00840 PF00330 Aconitase family (aconitate hydratase) BJD12_00840 PF11791 Aconitate B N-terminal domain BJD12_00840 PF06434 Aconitate hydratase 2 N-terminus BJD12_00845 PF00561 alpha/beta hydrolase fold BJD12_00850 PF03707 Bacterial signalling protein N terminal repeat BJD12_00850 PF00990 Diguanylate cyclase, GGDEF domain BJD12_00850 PF00563 EAL domain BJD12_00855 PF01339 CheB methylesterase BJD12_00855 PF00072 Response regulator receiver domain BJD12_00860 PF03975 CheD chemotactic sensory transduction BJD12_00865 PF03705 CheR methyltransferase, all-alpha domain BJD12_00865 PF01739 CheR methyltransferase, SAM binding domain BJD12_00870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00870 PF02203 Tar ligand binding domain homologue BJD12_00870 PF00672 HAMP domain BJD12_00880 PF01584 CheW-like domain BJD12_00885 PF07317 Flagellar regulator YcgR BJD12_00885 PF07238 PilZ domain BJD12_00895 PF00672 HAMP domain BJD12_00895 PF02203 Tar ligand binding domain homologue BJD12_00895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00900 PF00672 HAMP domain BJD12_00900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00900 PF02203 Tar ligand binding domain homologue BJD12_00905 PF00672 HAMP domain BJD12_00905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00905 PF02203 Tar ligand binding domain homologue BJD12_00910 PF00672 HAMP domain BJD12_00910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00915 PF02203 Tar ligand binding domain homologue BJD12_00915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00915 PF00672 HAMP domain BJD12_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00930 PF00672 HAMP domain BJD12_00930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00930 PF02203 Tar ligand binding domain homologue BJD12_00935 PF00672 HAMP domain BJD12_00935 PF17200 Single Cache domain 2 BJD12_00935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_00945 PF00672 HAMP domain BJD12_00950 PF01584 CheW-like domain BJD12_00950 PF09078 CheY binding BJD12_00950 PF02895 Signal transducing histidine kinase, homodimeric domain BJD12_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_00950 PF01627 Hpt domain BJD12_00955 PF00072 Response regulator receiver domain BJD12_00965 PF01584 CheW-like domain BJD12_00970 PF13614 AAA domain BJD12_00975 PF00691 OmpA family BJD12_00975 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD12_00980 PF01618 MotA/TolQ/ExbB proton channel family BJD12_01035 PF01527 Transposase BJD12_01040 PF13683 Integrase core domain BJD12_01040 PF13276 HTH-like domain BJD12_01055 PF07194 P2 response regulator binding domain BJD12_01055 PF01584 CheW-like domain BJD12_01055 PF02895 Signal transducing histidine kinase, homodimeric domain BJD12_01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_01055 PF01627 Hpt domain BJD12_01060 PF04344 Chemotaxis phosphatase, CheZ BJD12_01065 PF00072 Response regulator receiver domain BJD12_01070 PF04539 Sigma-70 region 3 BJD12_01070 PF04542 Sigma-70 region 2 BJD12_01070 PF04545 Sigma-70, region 4 BJD12_01075 PF10609 NUBPL iron-transfer P-loop NTPase BJD12_01080 PF00448 SRP54-type protein, GTPase domain BJD12_01085 PF00771 FHIPEP family BJD12_01090 PF01312 FlhB HrpN YscU SpaS Family BJD12_01095 PF00563 EAL domain BJD12_01095 PF03707 Bacterial signalling protein N terminal repeat BJD12_01095 PF00990 Diguanylate cyclase, GGDEF domain BJD12_01105 PF13188 PAS domain BJD12_01105 PF03707 Bacterial signalling protein N terminal repeat BJD12_01105 PF00990 Diguanylate cyclase, GGDEF domain BJD12_01105 PF00563 EAL domain BJD12_01110 PF01311 Bacterial export proteins, family 1 BJD12_01115 PF01313 Bacterial export proteins, family 3 BJD12_01125 PF00813 FliP family BJD12_01130 PF04347 Flagellar biosynthesis protein, FliO BJD12_01135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD12_01140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BJD12_01140 PF02154 Flagellar motor switch protein FliM BJD12_01160 PF18269 T3SS EscN ATPase C-terminal domain BJD12_01160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD12_01170 PF01706 FliG C-terminal domain BJD12_01170 PF14841 FliG middle domain BJD12_01170 PF14842 FliG N-terminal domain BJD12_01175 PF08345 Flagellar M-ring protein C-terminal BJD12_01175 PF01514 Secretory protein of YscJ/FliF family BJD12_01180 PF02049 Flagellar hook-basal body complex protein FliE BJD12_01190 PF00535 Glycosyl transferase family 2 BJD12_01190 PF00534 Glycosyl transferases group 1 BJD12_01235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD12_01235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD12_01245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD12_01250 PF02954 Bacterial regulatory protein, Fis family BJD12_01250 PF00072 Response regulator receiver domain BJD12_01250 PF00158 Sigma-54 interaction domain BJD12_01255 PF01339 CheB methylesterase BJD12_01255 PF00072 Response regulator receiver domain BJD12_01260 PF04552 Sigma-54, DNA binding domain BJD12_01260 PF04963 Sigma-54 factor, core binding domain BJD12_01260 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD12_01265 PF00196 Bacterial regulatory proteins, luxR family BJD12_01265 PF00072 Response regulator receiver domain BJD12_01280 PF02561 Flagellar protein FliS BJD12_01285 PF07195 Flagellar hook-associated protein 2 C-terminus BJD12_01285 PF02465 Flagellar hook-associated protein 2 N-terminus BJD12_01285 PF07196 Flagellin hook IN motif BJD12_01290 PF00700 Bacterial flagellin C-terminal helical region BJD12_01290 PF00669 Bacterial flagellin N-terminal helical region BJD12_01295 PF00700 Bacterial flagellin C-terminal helical region BJD12_01295 PF00669 Bacterial flagellin N-terminal helical region BJD12_01300 PF07196 Flagellin hook IN motif BJD12_01300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD12_01305 PF10135 Rod binding protein BJD12_01305 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD12_01310 PF02119 Flagellar P-ring protein BJD12_01315 PF02107 Flagellar L-ring protein BJD12_01320 PF00460 Flagella basal body rod protein BJD12_01320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD12_01335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD12_01335 PF00460 Flagella basal body rod protein BJD12_01340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD12_01340 PF07559 Flagellar basal body protein FlaE BJD12_01340 PF00460 Flagella basal body rod protein BJD12_01345 PF03963 Flagellar hook capping protein - N-terminal region BJD12_01350 PF00460 Flagella basal body rod protein BJD12_01350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BJD12_01355 PF00460 Flagella basal body rod protein BJD12_01360 PF01584 CheW-like domain BJD12_01360 PF00072 Response regulator receiver domain BJD12_01380 PF00512 His Kinase A (phospho-acceptor) domain BJD12_01380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_01385 PF00990 Diguanylate cyclase, GGDEF domain BJD12_01385 PF03707 Bacterial signalling protein N terminal repeat BJD12_01385 PF00563 EAL domain BJD12_01390 PF07730 Histidine kinase BJD12_01390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_01395 PF00990 Diguanylate cyclase, GGDEF domain BJD12_01395 PF03707 Bacterial signalling protein N terminal repeat BJD12_01395 PF00563 EAL domain BJD12_01410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_01410 PF00672 HAMP domain BJD12_01410 PF12729 Four helix bundle sensory module for signal transduction BJD12_01415 PF04356 Protein of unknown function (DUF489) BJD12_01425 PF00293 NUDIX domain BJD12_01430 PF02617 ATP-dependent Clp protease adaptor protein ClpS BJD12_01435 PF07724 AAA domain (Cdc48 subfamily) BJD12_01435 PF10431 C-terminal, D2-small domain, of ClpB protein BJD12_01435 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_01435 PF17871 AAA lid domain BJD12_01435 PF02861 Clp amino terminal domain, pathogenicity island component BJD12_01445 PF01176 Translation initiation factor 1A / IF-1 BJD12_01450 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BJD12_01460 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_01465 PF09397 Ftsk gamma domain BJD12_01465 PF01580 FtsK/SpoIIIE family BJD12_01465 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BJD12_01465 PF17854 FtsK alpha domain BJD12_01475 PF03548 Outer membrane lipoprotein carrier protein LolA BJD12_01480 PF12002 MgsA AAA+ ATPase C terminal BJD12_01480 PF16193 AAA C-terminal domain BJD12_01480 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_01485 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BJD12_01490 PF00108 Thiolase, N-terminal domain BJD12_01490 PF02803 Thiolase, C-terminal domain BJD12_01495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD12_01495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD12_01495 PF00378 Enoyl-CoA hydratase/isomerase BJD12_01505 PF00334 Nucleoside diphosphate kinase BJD12_01510 PF04055 Radical SAM superfamily BJD12_01520 PF13464 Domain of unknown function (DUF4115) BJD12_01530 PF13360 PQQ-like domain BJD12_01530 PF01011 PQQ enzyme repeat BJD12_01535 PF01926 50S ribosome-binding GTPase BJD12_01535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BJD12_01540 PF00994 Probable molybdopterin binding domain BJD12_01540 PF03454 MoeA C-terminal region (domain IV) BJD12_01540 PF03453 MoeA N-terminal region (domain I and II) BJD12_01545 PF00899 ThiF family BJD12_01560 PF03372 Endonuclease/Exonuclease/phosphatase family BJD12_01570 PF00994 Probable molybdopterin binding domain BJD12_01570 PF03454 MoeA C-terminal region (domain IV) BJD12_01570 PF03453 MoeA N-terminal region (domain I and II) BJD12_01575 PF12804 MobA-like NTP transferase domain BJD12_01585 PF10414 Sirohaem synthase dimerisation region BJD12_01585 PF14824 Sirohaem biosynthesis protein central BJD12_01585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD12_01590 PF00072 Response regulator receiver domain BJD12_01590 PF03861 ANTAR domain BJD12_01605 PF07690 Major Facilitator Superfamily BJD12_01610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD12_01610 PF18267 Rubredoxin NAD+ reductase C-terminal domain BJD12_01610 PF04324 BFD-like [2Fe-2S] binding domain BJD12_01610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD12_01610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_01615 PF00355 Rieske [2Fe-2S] domain BJD12_01620 PF04324 BFD-like [2Fe-2S] binding domain BJD12_01620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BJD12_01620 PF01568 Molydopterin dinucleotide binding domain BJD12_01620 PF00384 Molybdopterin oxidoreductase BJD12_01625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD12_01635 PF05974 Domain of unknown function (DUF892) BJD12_01645 PF08448 PAS fold BJD12_01645 PF08447 PAS fold BJD12_01645 PF00990 Diguanylate cyclase, GGDEF domain BJD12_01645 PF00563 EAL domain BJD12_01650 PF12951 Passenger-associated-transport-repeat BJD12_01650 PF12951 Passenger-associated-transport-repeat BJD12_01655 PF03797 Autotransporter beta-domain BJD12_01655 PF00082 Subtilase family BJD12_01675 PF07995 Glucose / Sorbosone dehydrogenase BJD12_01690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD12_01715 PF09335 SNARE associated Golgi protein BJD12_01725 PF00440 Bacterial regulatory proteins, tetR family BJD12_01735 PF07690 Major Facilitator Superfamily BJD12_01740 PF00106 short chain dehydrogenase BJD12_01765 PF02585 GlcNAc-PI de-N-acetylase BJD12_01765 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD12_01785 PF05199 GMC oxidoreductase BJD12_01785 PF00732 GMC oxidoreductase BJD12_01790 PF00106 short chain dehydrogenase BJD12_01805 PF02627 Carboxymuconolactone decarboxylase family BJD12_01820 PF03466 LysR substrate binding domain BJD12_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_01835 PF01129 NAD:arginine ADP-ribosyltransferase BJD12_01840 PF13333 Integrase core domain BJD12_01840 PF13276 HTH-like domain BJD12_01840 PF00665 Integrase core domain BJD12_01845 PF01527 Transposase BJD12_01900 PF01527 Transposase BJD12_02025 PF01106 NifU-like domain BJD12_02030 PF01329 Pterin 4 alpha carbinolamine dehydratase BJD12_02040 PF02535 ZIP Zinc transporter BJD12_02045 PF11737 Protein of unknown function (DUF3300) BJD12_02050 PF01479 S4 domain BJD12_02050 PF00849 RNA pseudouridylate synthase BJD12_02055 PF12111 Polyribonucleotide phosphorylase C terminal BJD12_02055 PF10150 Ribonuclease E/G family BJD12_02055 PF00575 S1 RNA binding domain BJD12_02060 PF00196 Bacterial regulatory proteins, luxR family BJD12_02060 PF00072 Response regulator receiver domain BJD12_02075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD12_02085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD12_02085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD12_02085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD12_02110 PF01066 CDP-alcohol phosphatidyltransferase BJD12_02115 PF01541 GIY-YIG catalytic domain BJD12_02115 PF08459 UvrC Helix-hairpin-helix N-terminal BJD12_02115 PF02151 UvrB/uvrC motif BJD12_02125 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD12_02130 PF02348 Cytidylyltransferase BJD12_02135 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BJD12_02140 PF00664 ABC transporter transmembrane region BJD12_02140 PF00005 ABC transporter BJD12_02150 PF01618 MotA/TolQ/ExbB proton channel family BJD12_02155 PF00753 Metallo-beta-lactamase superfamily BJD12_02155 PF03772 Competence protein BJD12_02170 PF00005 ABC transporter BJD12_02175 PF12704 MacB-like periplasmic core domain BJD12_02175 PF02687 FtsX-like permease family BJD12_02185 PF03937 Flavinator of succinate dehydrogenase BJD12_02190 PF13085 2Fe-2S iron-sulfur cluster binding domain BJD12_02200 PF02910 Fumarate reductase flavoprotein C-term BJD12_02200 PF00890 FAD binding domain BJD12_02205 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD12_02210 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BJD12_02220 PF01571 Aminomethyltransferase folate-binding domain BJD12_02225 PF00005 ABC transporter BJD12_02225 PF17912 MalK OB fold domain BJD12_02230 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD12_02230 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD12_02235 PF02685 Glucokinase BJD12_02240 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BJD12_02245 PF00920 Dehydratase family BJD12_02250 PF01081 KDPG and KHG aldolase BJD12_02255 PF00873 AcrB/AcrD/AcrF family BJD12_02260 PF00873 AcrB/AcrD/AcrF family BJD12_02265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_02275 PF00034 Cytochrome c BJD12_02315 PF01627 Hpt domain BJD12_02315 PF00072 Response regulator receiver domain BJD12_02315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD12_02315 PF00512 His Kinase A (phospho-acceptor) domain BJD12_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_02315 PF00672 HAMP domain BJD12_02320 PF09371 Tex-like protein N-terminal domain BJD12_02320 PF00575 S1 RNA binding domain BJD12_02320 PF16921 Tex protein YqgF-like domain BJD12_02320 PF17674 HHH domain BJD12_02345 PF00561 alpha/beta hydrolase fold BJD12_02355 PF01066 CDP-alcohol phosphatidyltransferase BJD12_02375 PF03618 Kinase/pyrophosphorylase BJD12_02380 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BJD12_02380 PF02896 PEP-utilising enzyme, TIM barrel domain BJD12_02380 PF00391 PEP-utilising enzyme, mobile domain BJD12_02385 PF00924 Mechanosensitive ion channel BJD12_02385 PF05552 Conserved TM helix BJD12_02390 PF00929 Exonuclease BJD12_02395 PF14437 MafB19-like deaminase BJD12_02400 PF01325 Iron dependent repressor, N-terminal DNA binding domain BJD12_02400 PF02742 Iron dependent repressor, metal binding and dimerisation domain BJD12_02405 PF01566 Natural resistance-associated macrophage protein BJD12_02410 PF00561 alpha/beta hydrolase fold BJD12_02420 PF05977 Transmembrane secretion effector BJD12_02425 PF07969 Amidohydrolase family BJD12_02435 PF00857 Isochorismatase family BJD12_02445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_02445 PF07730 Histidine kinase BJD12_02450 PF00196 Bacterial regulatory proteins, luxR family BJD12_02450 PF00072 Response regulator receiver domain BJD12_02465 PF00117 Glutamine amidotransferase class-I BJD12_02465 PF00958 GMP synthase C terminal domain BJD12_02465 PF02540 NAD synthase BJD12_02470 PF00571 CBS domain BJD12_02470 PF00478 IMP dehydrogenase / GMP reductase domain BJD12_02475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BJD12_02475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BJD12_02485 PF00999 Sodium/hydrogen exchanger family BJD12_02485 PF02254 TrkA-N domain BJD12_02490 PF00483 Nucleotidyl transferase BJD12_02495 PF02719 Polysaccharide biosynthesis protein BJD12_02500 PF00953 Glycosyl transferase family 4 BJD12_02505 PF18073 Rubredoxin metal binding domain BJD12_02515 PF00216 Bacterial DNA-binding protein BJD12_02520 PF00575 S1 RNA binding domain BJD12_02525 PF02224 Cytidylate kinase BJD12_02530 PF00444 Ribosomal protein L36 BJD12_02540 PF04371 Porphyromonas-type peptidyl-arginine deiminase BJD12_02545 PF00795 Carbon-nitrogen hydrolase BJD12_02570 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_02575 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_02580 PF01547 Bacterial extracellular solute-binding protein BJD12_02595 PF00356 Bacterial regulatory proteins, lacI family BJD12_02605 PF03795 YCII-related domain BJD12_02610 PF02616 Segregation and condensation protein ScpA BJD12_02615 PF04079 Segregation and condensation complex subunit ScpB BJD12_02620 PF01479 S4 domain BJD12_02620 PF00849 RNA pseudouridylate synthase BJD12_02635 PF00795 Carbon-nitrogen hydrolase BJD12_02645 PF00155 Aminotransferase class I and II BJD12_02650 PF00005 ABC transporter BJD12_02655 PF03379 CcmB protein BJD12_02660 PF01578 Cytochrome C assembly protein BJD12_02670 PF03100 CcmE BJD12_02675 PF01578 Cytochrome C assembly protein BJD12_02675 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD12_02680 PF08534 Redoxin BJD12_02685 PF03918 Cytochrome C biogenesis protein BJD12_02715 PF00561 alpha/beta hydrolase fold BJD12_02725 PF00005 ABC transporter BJD12_02725 PF00664 ABC transporter transmembrane region BJD12_02730 PF00664 ABC transporter transmembrane region BJD12_02730 PF00005 ABC transporter BJD12_02735 PF01654 Cytochrome bd terminal oxidase subunit I BJD12_02740 PF02322 Cytochrome bd terminal oxidase subunit II BJD12_02760 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BJD12_02760 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BJD12_02765 PF00171 Aldehyde dehydrogenase family BJD12_02770 PF01472 PUA domain BJD12_02770 PF00696 Amino acid kinase family BJD12_02785 PF00206 Lyase BJD12_02790 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD12_02800 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase BJD12_02800 PF00696 Amino acid kinase family BJD12_02805 PF01546 Peptidase family M20/M25/M40 BJD12_02805 PF07687 Peptidase dimerisation domain BJD12_02815 PF00764 Arginosuccinate synthase BJD12_02825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD12_02825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD12_02835 PF09190 DALR domain BJD12_02835 PF01406 tRNA synthetases class I (C) catalytic domain BJD12_02840 PF02657 Fe-S metabolism associated domain BJD12_02850 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD12_02855 PF01809 Putative membrane protein insertion efficiency factor BJD12_02860 PF01979 Amidohydrolase family BJD12_02865 PF08460 Bacterial SH3 domain BJD12_02865 PF01551 Peptidase family M23 BJD12_02875 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BJD12_02880 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BJD12_02905 PF00295 Glycosyl hydrolases family 28 BJD12_02915 PF13419 Haloacid dehalogenase-like hydrolase BJD12_02925 PF01979 Amidohydrolase family BJD12_02935 PF09285 Elongation factor P, C-terminal BJD12_02935 PF08207 Elongation factor P (EF-P) KOW-like domain BJD12_02935 PF01132 Elongation factor P (EF-P) OB domain BJD12_02940 PF04055 Radical SAM superfamily BJD12_02945 PF13188 PAS domain BJD12_02945 PF00563 EAL domain BJD12_02945 PF03707 Bacterial signalling protein N terminal repeat BJD12_02945 PF00990 Diguanylate cyclase, GGDEF domain BJD12_02955 PF00588 SpoU rRNA Methylase family BJD12_02960 PF00459 Inositol monophosphatase family BJD12_02965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD12_02965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD12_02970 PF00545 ribonuclease BJD12_02990 PF00271 Helicase conserved C-terminal domain BJD12_02990 PF00270 DEAD/DEAH box helicase BJD12_02990 PF03880 DbpA RNA binding domain BJD12_03000 PF00156 Phosphoribosyl transferase domain BJD12_03005 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BJD12_03015 PF14497 Glutathione S-transferase, C-terminal domain BJD12_03015 PF02798 Glutathione S-transferase, N-terminal domain BJD12_03020 PF00313 'Cold-shock' DNA-binding domain BJD12_03025 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BJD12_03030 PF07152 YaeQ protein BJD12_03040 PF00563 EAL domain BJD12_03040 PF00990 Diguanylate cyclase, GGDEF domain BJD12_03040 PF00072 Response regulator receiver domain BJD12_03045 PF01435 Peptidase family M48 BJD12_03050 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD12_03055 PF00106 short chain dehydrogenase BJD12_03060 PF05233 PHB accumulation regulatory domain BJD12_03060 PF07879 PHB/PHA accumulation regulator DNA-binding domain BJD12_03075 PF01119 DNA mismatch repair protein, C-terminal domain BJD12_03075 PF08676 MutL C terminal dimerisation domain BJD12_03080 PF11741 AMIN domain BJD12_03080 PF01520 N-acetylmuramoyl-L-alanine amidase BJD12_03090 PF01256 Carbohydrate kinase BJD12_03090 PF03853 YjeF-related protein N-terminus BJD12_03095 PF08331 Domain of unknown function (DUF1730) BJD12_03100 PF13742 OB-fold nucleic acid binding domain BJD12_03100 PF02601 Exonuclease VII, large subunit BJD12_03110 PF03781 Sulfatase-modifying factor enzyme 1 BJD12_03120 PF00570 HRDC domain BJD12_03120 PF01612 3'-5' exonuclease BJD12_03125 PF04679 ATP dependent DNA ligase C terminal region BJD12_03125 PF01068 ATP dependent DNA ligase domain BJD12_03125 PF13298 DNA polymerase Ligase (LigD) BJD12_03145 PF00589 Phage integrase family BJD12_03145 PF13356 Arm DNA-binding domain BJD12_03160 PF01381 Helix-turn-helix BJD12_03180 PF01584 CheW-like domain BJD12_03185 PF00672 HAMP domain BJD12_03185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_03185 PF02203 Tar ligand binding domain homologue BJD12_03190 PF02245 Methylpurine-DNA glycosylase (MPG) BJD12_03195 PF08494 DEAD/H associated BJD12_03195 PF00270 DEAD/DEAH box helicase BJD12_03195 PF00271 Helicase conserved C-terminal domain BJD12_03210 PF04386 Stringent starvation protein B BJD12_03215 PF00043 Glutathione S-transferase, C-terminal domain BJD12_03215 PF02798 Glutathione S-transferase, N-terminal domain BJD12_03220 PF02167 Cytochrome C1 family BJD12_03225 PF00032 Cytochrome b(C-terminal)/b6/petD BJD12_03225 PF00033 Cytochrome b/b6/petB BJD12_03230 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BJD12_03230 PF00355 Rieske [2Fe-2S] domain BJD12_03235 PF01464 Transglycosylase SLT domain BJD12_03250 PF04055 Radical SAM superfamily BJD12_03250 PF01938 TRAM domain BJD12_03250 PF00919 Uncharacterized protein family UPF0004 BJD12_03255 PF02562 PhoH-like protein BJD12_03265 PF02130 Uncharacterized protein family UPF0054 BJD12_03275 PF03471 Transporter associated domain BJD12_03275 PF00571 CBS domain BJD12_03290 PF00171 Aldehyde dehydrogenase family BJD12_03300 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_03305 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_03310 PF00005 ABC transporter BJD12_03310 PF08402 TOBE domain BJD12_03315 PF02321 Outer membrane efflux protein BJD12_03320 PF07690 Major Facilitator Superfamily BJD12_03325 PF13533 Biotin-lipoyl like BJD12_03330 PF13416 Bacterial extracellular solute-binding protein BJD12_03335 PF00202 Aminotransferase class-III BJD12_03345 PF00120 Glutamine synthetase, catalytic domain BJD12_03350 PF07722 Peptidase C26 BJD12_03355 PF00120 Glutamine synthetase, catalytic domain BJD12_03360 PF01266 FAD dependent oxidoreductase BJD12_03365 PF00072 Response regulator receiver domain BJD12_03365 PF00990 Diguanylate cyclase, GGDEF domain BJD12_03375 PF01814 Hemerythrin HHE cation binding domain BJD12_03380 PF00083 Sugar (and other) transporter BJD12_03380 PF07690 Major Facilitator Superfamily BJD12_03395 PF00384 Molybdopterin oxidoreductase BJD12_03400 PF02634 FdhD/NarQ family BJD12_03405 PF07690 Major Facilitator Superfamily BJD12_03410 PF00202 Aminotransferase class-III BJD12_03420 PF04286 Protein of unknown function (DUF445) BJD12_03425 PF00672 HAMP domain BJD12_03425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD12_03425 PF00512 His Kinase A (phospho-acceptor) domain BJD12_03425 PF00072 Response regulator receiver domain BJD12_03425 PF01627 Hpt domain BJD12_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_03430 PF00072 Response regulator receiver domain BJD12_03435 PF07690 Major Facilitator Superfamily BJD12_03440 PF00440 Bacterial regulatory proteins, tetR family BJD12_03445 PF00106 short chain dehydrogenase BJD12_03450 PF05088 Bacterial NAD-glutamate dehydrogenase BJD12_03460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_03460 PF00529 HlyD membrane-fusion protein of T1SS BJD12_03465 PF00873 AcrB/AcrD/AcrF family BJD12_03480 PF05524 PEP-utilising enzyme, N-terminal BJD12_03480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD12_03480 PF00381 PTS HPr component phosphorylation site BJD12_03480 PF00391 PEP-utilising enzyme, mobile domain BJD12_03480 PF02896 PEP-utilising enzyme, TIM barrel domain BJD12_03485 PF00294 pfkB family carbohydrate kinase BJD12_03490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BJD12_03570 PF02355 Protein export membrane protein BJD12_03570 PF07549 SecD/SecF GG Motif BJD12_03575 PF02355 Protein export membrane protein BJD12_03575 PF07549 SecD/SecF GG Motif BJD12_03575 PF13721 SecD export protein N-terminal TM region BJD12_03580 PF02699 Preprotein translocase subunit BJD12_03585 PF01702 Queuine tRNA-ribosyltransferase BJD12_03590 PF02547 Queuosine biosynthesis protein BJD12_03630 PF00759 Glycosyl hydrolase family 9 BJD12_03630 PF02927 Cellulase N-terminal ig-like domain BJD12_03640 PF00037 4Fe-4S binding domain BJD12_03655 PF01467 Cytidylyltransferase-like BJD12_03665 PF00183 Hsp90 protein BJD12_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_03685 PF00593 TonB dependent receptor BJD12_03685 PF07715 TonB-dependent Receptor Plug Domain BJD12_03695 PF00082 Subtilase family BJD12_03695 PF09286 Pro-kumamolisin, activation domain BJD12_03715 PF13520 Amino acid permease BJD12_03730 PF01321 Creatinase/Prolidase N-terminal domain BJD12_03730 PF00557 Metallopeptidase family M24 BJD12_03735 PF00171 Aldehyde dehydrogenase family BJD12_03740 PF00701 Dihydrodipicolinate synthetase family BJD12_03745 PF04324 BFD-like [2Fe-2S] binding domain BJD12_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_03755 PF01266 FAD dependent oxidoreductase BJD12_03760 PF05544 Proline racemase BJD12_03770 PF02881 SRP54-type protein, helical bundle domain BJD12_03770 PF00448 SRP54-type protein, GTPase domain BJD12_03780 PF00633 Helix-hairpin-helix motif BJD12_03780 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD12_03780 PF14815 NUDIX domain BJD12_03785 PF04362 Bacterial Fe(2+) trafficking BJD12_03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_03795 PF13426 PAS domain BJD12_03795 PF00072 Response regulator receiver domain BJD12_03800 PF13649 Methyltransferase domain BJD12_03840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_03840 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_03840 PF12806 Acetyl-CoA dehydrogenase C-terminal like BJD12_03840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_03850 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BJD12_03850 PF02779 Transketolase, pyrimidine binding domain BJD12_03850 PF02780 Transketolase, C-terminal domain BJD12_03870 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD12_03880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD12_03880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD12_03900 PF03808 Glycosyl transferase WecB/TagA/CpsF family BJD12_03915 PF14667 Polysaccharide biosynthesis C-terminal domain BJD12_03925 PF13439 Glycosyltransferase Family 4 BJD12_03925 PF00534 Glycosyl transferases group 1 BJD12_03945 PF02397 Bacterial sugar transferase BJD12_03965 PF13411 MerR HTH family regulatory protein BJD12_03970 PF00216 Bacterial DNA-binding protein BJD12_03975 PF03147 Ferredoxin-fold anticodon binding domain BJD12_03975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BJD12_03975 PF01588 Putative tRNA binding domain BJD12_03975 PF03483 B3/4 domain BJD12_03975 PF03484 tRNA synthetase B5 domain BJD12_03980 PF01409 tRNA synthetases class II core domain (F) BJD12_03980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BJD12_03985 PF00453 Ribosomal protein L20 BJD12_03990 PF01632 Ribosomal protein L35 BJD12_03995 PF00707 Translation initiation factor IF-3, C-terminal domain BJD12_03995 PF05198 Translation initiation factor IF-3, N-terminal domain BJD12_04000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD12_04000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD12_04000 PF02824 TGS domain BJD12_04000 PF03129 Anticodon binding domain BJD12_04005 PF00356 Bacterial regulatory proteins, lacI family BJD12_04010 PF00686 Starch binding domain BJD12_04010 PF00128 Alpha amylase, catalytic domain BJD12_04015 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BJD12_04025 PF14508 Glycosyl-hydrolase 97 N-terminal BJD12_04025 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD12_04025 PF10566 Glycoside hydrolase 97 BJD12_04040 PF00128 Alpha amylase, catalytic domain BJD12_04050 PF01527 Transposase BJD12_04090 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BJD12_04095 PF05101 Type IV secretory pathway, VirB3-like protein BJD12_04105 PF01464 Transglycosylase SLT domain BJD12_04110 PF00437 Type II/IV secretion system protein BJD12_04115 PF03743 Bacterial conjugation TrbI-like protein BJD12_04135 PF02534 Type IV secretory system Conjugative DNA transfer BJD12_04150 PF17757 UvrB interaction domain BJD12_04150 PF12344 Ultra-violet resistance protein B BJD12_04150 PF02151 UvrB/uvrC motif BJD12_04150 PF04851 Type III restriction enzyme, res subunit BJD12_04150 PF00271 Helicase conserved C-terminal domain BJD12_04165 PF00114 Pilin (bacterial filament) BJD12_04165 PF07963 Prokaryotic N-terminal methylation motif BJD12_04170 PF05567 Neisseria PilC beta-propeller domain BJD12_04195 PF07963 Prokaryotic N-terminal methylation motif BJD12_04195 PF00114 Pilin (bacterial filament) BJD12_04200 PF07694 5TMR of 5TMR-LYT BJD12_04200 PF06580 Histidine kinase BJD12_04200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_04205 PF11892 Domain of unknown function (DUF3412) BJD12_04205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BJD12_04205 PF03641 Possible lysine decarboxylase BJD12_04210 PF00593 TonB dependent receptor BJD12_04215 PF01914 MarC family integral membrane protein BJD12_04225 PF00462 Glutaredoxin BJD12_04230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BJD12_04230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BJD12_04235 PF02222 ATP-grasp domain BJD12_04235 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BJD12_04240 PF00731 AIR carboxylase BJD12_04250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BJD12_04250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BJD12_04260 PF00575 S1 RNA binding domain BJD12_04260 PF03725 3' exoribonuclease family, domain 2 BJD12_04260 PF01138 3' exoribonuclease family, domain 1 BJD12_04260 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BJD12_04260 PF00013 KH domain BJD12_04265 PF00312 Ribosomal protein S15 BJD12_04270 PF09157 Pseudouridine synthase II TruB, C-terminal BJD12_04270 PF01509 TruB family pseudouridylate synthase (N terminal domain) BJD12_04270 PF16198 tRNA pseudouridylate synthase B C-terminal domain BJD12_04275 PF02033 Ribosome-binding factor A BJD12_04280 PF08364 Bacterial translation initiation factor IF-2 associated region BJD12_04280 PF11987 Translation-initiation factor 2 BJD12_04280 PF00009 Elongation factor Tu GTP binding domain BJD12_04280 PF04760 Translation initiation factor IF-2, N-terminal region BJD12_04285 PF13184 NusA-like KH domain BJD12_04285 PF08529 NusA N-terminal domain BJD12_04285 PF00575 S1 RNA binding domain BJD12_04290 PF17384 RimP C-terminal SH3 domain BJD12_04290 PF02576 RimP N-terminal domain BJD12_04300 PF00361 Proton-conducting membrane transporter BJD12_04305 PF00361 Proton-conducting membrane transporter BJD12_04305 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BJD12_04310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD12_04310 PF00361 Proton-conducting membrane transporter BJD12_04315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD12_04320 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BJD12_04325 PF12838 4Fe-4S dicluster domain BJD12_04330 PF00146 NADH dehydrogenase BJD12_04335 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BJD12_04335 PF00384 Molybdopterin oxidoreductase BJD12_04335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BJD12_04340 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BJD12_04340 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BJD12_04340 PF10531 SLBB domain BJD12_04350 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BJD12_04355 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BJD12_04360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BJD12_04365 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BJD12_04380 PF00121 Triosephosphate isomerase BJD12_04385 PF00106 short chain dehydrogenase BJD12_04405 PF00563 EAL domain BJD12_04405 PF03707 Bacterial signalling protein N terminal repeat BJD12_04405 PF00990 Diguanylate cyclase, GGDEF domain BJD12_04420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD12_04420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD12_04420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD12_04420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD12_04425 PF01039 Carboxyl transferase domain BJD12_04425 PF17848 Acetyl-coA carboxylase zinc finger domain BJD12_04430 PF00290 Tryptophan synthase alpha chain BJD12_04440 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_04445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_04445 PF03466 LysR substrate binding domain BJD12_04450 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BJD12_04455 PF01416 tRNA pseudouridine synthase BJD12_04470 PF01118 Semialdehyde dehydrogenase, NAD binding domain BJD12_04470 PF02774 Semialdehyde dehydrogenase, dimerisation domain BJD12_04475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD12_04475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD12_04480 PF01264 Chorismate synthase BJD12_04490 PF05175 Methyltransferase small domain BJD12_04495 PF02630 SCO1/SenC BJD12_04500 PF02666 Phosphatidylserine decarboxylase BJD12_04510 PF06737 Transglycosylase-like domain BJD12_04515 PF05872 Bacterial protein of unknown function (DUF853) BJD12_04525 PF00293 NUDIX domain BJD12_04555 PF03449 Transcription elongation factor, N-terminal BJD12_04555 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD12_04560 PF00919 Uncharacterized protein family UPF0004 BJD12_04560 PF04055 Radical SAM superfamily BJD12_04560 PF18693 TRAM domain BJD12_04565 PF01738 Dienelactone hydrolase family BJD12_04585 PF00692 dUTPase BJD12_04595 PF10609 NUBPL iron-transfer P-loop NTPase BJD12_04600 PF00593 TonB dependent receptor BJD12_04600 PF07715 TonB-dependent Receptor Plug Domain BJD12_04615 PF05649 Peptidase family M13 BJD12_04615 PF01431 Peptidase family M13 BJD12_04620 PF05649 Peptidase family M13 BJD12_04620 PF01431 Peptidase family M13 BJD12_04640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD12_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_04645 PF01266 FAD dependent oxidoreductase BJD12_04650 PF04235 Protein of unknown function (DUF418) BJD12_04655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD12_04660 PF00877 NlpC/P60 family BJD12_04665 PF00877 NlpC/P60 family BJD12_04690 PF00072 Response regulator receiver domain BJD12_04690 PF02954 Bacterial regulatory protein, Fis family BJD12_04690 PF00158 Sigma-54 interaction domain BJD12_04695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_04695 PF00512 His Kinase A (phospho-acceptor) domain BJD12_04710 PF08241 Methyltransferase domain BJD12_04715 PF00375 Sodium:dicarboxylate symporter family BJD12_04720 PF00245 Alkaline phosphatase BJD12_04725 PF01171 PP-loop family BJD12_04725 PF11734 TilS substrate C-terminal domain BJD12_04725 PF09179 TilS substrate binding domain BJD12_04730 PF02609 Exonuclease VII small subunit BJD12_04735 PF00348 Polyprenyl synthetase BJD12_04745 PF14521 Lysine-specific metallo-endopeptidase BJD12_04755 PF01523 Putative modulator of DNA gyrase BJD12_04760 PF04751 Protein of unknown function (DUF615) BJD12_04765 PF01523 Putative modulator of DNA gyrase BJD12_04780 PF10150 Ribonuclease E/G family BJD12_04780 PF00575 S1 RNA binding domain BJD12_04785 PF02545 Maf-like protein BJD12_04790 PF04402 Protein of unknown function (DUF541) BJD12_04805 PF02590 Predicted SPOUT methyltransferase BJD12_04820 PF01467 Cytidylyltransferase-like BJD12_04835 PF13603 Leucyl-tRNA synthetase, Domain 2 BJD12_04835 PF00133 tRNA synthetases class I (I, L, M and V) BJD12_04835 PF08264 Anticodon-binding domain of tRNA BJD12_04845 PF00085 Thioredoxin BJD12_04855 PF04070 Domain of unknown function (DUF378) BJD12_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_04870 PF03466 LysR substrate binding domain BJD12_04875 PF01022 Bacterial regulatory protein, arsR family BJD12_04910 PF00664 ABC transporter transmembrane region BJD12_04910 PF00005 ABC transporter BJD12_04920 PF00999 Sodium/hydrogen exchanger family BJD12_04925 PF00144 Beta-lactamase BJD12_04925 PF07930 D-aminopeptidase, domain B BJD12_04930 PF03737 Aldolase/RraA BJD12_04935 PF13537 Glutamine amidotransferase domain BJD12_04935 PF00733 Asparagine synthase BJD12_04950 PF08448 PAS fold BJD12_04950 PF00990 Diguanylate cyclase, GGDEF domain BJD12_04955 PF01479 S4 domain BJD12_04955 PF00849 RNA pseudouridylate synthase BJD12_04960 PF08448 PAS fold BJD12_04960 PF00990 Diguanylate cyclase, GGDEF domain BJD12_04960 PF00563 EAL domain BJD12_04965 PF00270 DEAD/DEAH box helicase BJD12_04965 PF03880 DbpA RNA binding domain BJD12_04965 PF00271 Helicase conserved C-terminal domain BJD12_04980 PF01494 FAD binding domain BJD12_05010 PF06029 AlkA N-terminal domain BJD12_05010 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD12_05015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BJD12_05015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BJD12_05025 PF00654 Voltage gated chloride channel BJD12_05040 PF07715 TonB-dependent Receptor Plug Domain BJD12_05040 PF00593 TonB dependent receptor BJD12_05050 PF01483 Proprotein convertase P-domain BJD12_05050 PF00082 Subtilase family BJD12_05080 PF00082 Subtilase family BJD12_05080 PF01483 Proprotein convertase P-domain BJD12_05090 PF00248 Aldo/keto reductase family BJD12_05095 PF07690 Major Facilitator Superfamily BJD12_05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_05100 PF03466 LysR substrate binding domain BJD12_05110 PF06719 AraC-type transcriptional regulator N-terminus BJD12_05110 PF12833 Helix-turn-helix domain BJD12_05120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_05120 PF03466 LysR substrate binding domain BJD12_05125 PF00248 Aldo/keto reductase family BJD12_05130 PF00440 Bacterial regulatory proteins, tetR family BJD12_05130 PF16859 Tetracyclin repressor-like, C-terminal domain BJD12_05135 PF02321 Outer membrane efflux protein BJD12_05140 PF00873 AcrB/AcrD/AcrF family BJD12_05145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_05145 PF00529 HlyD membrane-fusion protein of T1SS BJD12_05155 PF01475 Ferric uptake regulator family BJD12_05160 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD12_05185 PF06123 Inner membrane protein CreD BJD12_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_05190 PF00672 HAMP domain BJD12_05190 PF00512 His Kinase A (phospho-acceptor) domain BJD12_05195 PF00072 Response regulator receiver domain BJD12_05195 PF00486 Transcriptional regulatory protein, C terminal BJD12_05200 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BJD12_05220 PF02559 CarD-like/TRCF domain BJD12_05220 PF00271 Helicase conserved C-terminal domain BJD12_05220 PF03461 TRCF domain BJD12_05220 PF17757 UvrB interaction domain BJD12_05220 PF00270 DEAD/DEAH box helicase BJD12_05230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_05230 PF01584 CheW-like domain BJD12_05230 PF01627 Hpt domain BJD12_05230 PF02895 Signal transducing histidine kinase, homodimeric domain BJD12_05230 PF09078 CheY binding BJD12_05240 PF02203 Tar ligand binding domain homologue BJD12_05240 PF00672 HAMP domain BJD12_05240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_05245 PF01584 CheW-like domain BJD12_05250 PF00563 EAL domain BJD12_05250 PF03707 Bacterial signalling protein N terminal repeat BJD12_05250 PF00990 Diguanylate cyclase, GGDEF domain BJD12_05255 PF03705 CheR methyltransferase, all-alpha domain BJD12_05255 PF01739 CheR methyltransferase, SAM binding domain BJD12_05260 PF01339 CheB methylesterase BJD12_05260 PF00072 Response regulator receiver domain BJD12_05270 PF13091 PLD-like domain BJD12_05275 PF05649 Peptidase family M13 BJD12_05275 PF01431 Peptidase family M13 BJD12_05285 PF00300 Histidine phosphatase superfamily (branch 1) BJD12_05290 PF04493 Endonuclease V BJD12_05305 PF05726 Pirin C-terminal cupin domain BJD12_05305 PF02678 Pirin BJD12_05320 PF05726 Pirin C-terminal cupin domain BJD12_05320 PF02678 Pirin BJD12_05325 PF13722 5TM C-terminal transporter carbon starvation CstA BJD12_05325 PF02554 Carbon starvation protein CstA BJD12_05330 PF04328 Selenoprotein, putative BJD12_05365 PF12804 MobA-like NTP transferase domain BJD12_05370 PF13478 XdhC Rossmann domain BJD12_05370 PF02625 XdhC and CoxI family BJD12_05375 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_05375 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD12_05385 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD12_05385 PF01799 [2Fe-2S] binding domain BJD12_05385 PF10518 TAT (twin-arginine translocation) pathway signal sequence BJD12_05390 PF00698 Acyl transferase domain BJD12_05390 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_05390 PF00107 Zinc-binding dehydrogenase BJD12_05390 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_05390 PF14765 Polyketide synthase dehydratase BJD12_05390 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_05390 PF00550 Phosphopantetheine attachment site BJD12_05390 PF16197 Ketoacyl-synthetase C-terminal extension BJD12_05390 PF08659 KR domain BJD12_05400 PF00436 Single-strand binding protein family BJD12_05405 PF00348 Polyprenyl synthetase BJD12_05415 PF08245 Mur ligase middle domain BJD12_05415 PF02875 Mur ligase family, glutamate ligase domain BJD12_05430 PF01842 ACT domain BJD12_05430 PF00696 Amino acid kinase family BJD12_05435 PF02567 Phenazine biosynthesis-like protein BJD12_05440 PF02567 Phenazine biosynthesis-like protein BJD12_05450 PF02566 OsmC-like protein BJD12_05455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BJD12_05455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BJD12_05460 PF03652 Holliday junction resolvase BJD12_05465 PF02622 Uncharacterized ACR, COG1678 BJD12_05470 PF13687 Domain of unknown function (DUF4153) BJD12_05475 PF00117 Glutamine amidotransferase class-I BJD12_05475 PF00958 GMP synthase C terminal domain BJD12_05475 PF13673 Acetyltransferase (GNAT) domain BJD12_05475 PF13302 Acetyltransferase (GNAT) domain BJD12_05475 PF03352 Methyladenine glycosylase BJD12_05495 PF00437 Type II/IV secretion system protein BJD12_05500 PF00437 Type II/IV secretion system protein BJD12_05505 PF01168 Alanine racemase, N-terminal domain BJD12_05510 PF03807 NADP oxidoreductase coenzyme F420-dependent BJD12_05510 PF14748 Pyrroline-5-carboxylate reductase dimerisation BJD12_05520 PF01476 LysM domain BJD12_05520 PF01551 Peptidase family M23 BJD12_05540 PF01965 DJ-1/PfpI family BJD12_05550 PF02082 Transcriptional regulator BJD12_05555 PF01458 Uncharacterized protein family (UPF0051) BJD12_05560 PF00005 ABC transporter BJD12_05565 PF01458 Uncharacterized protein family (UPF0051) BJD12_05570 PF00266 Aminotransferase class-V BJD12_05575 PF00583 Acetyltransferase (GNAT) family BJD12_05580 PF00355 Rieske [2Fe-2S] domain BJD12_05585 PF00593 TonB dependent receptor BJD12_05585 PF07715 TonB-dependent Receptor Plug Domain BJD12_05590 PF13640 2OG-Fe(II) oxygenase superfamily BJD12_05590 PF18331 PKHD-type hydroxylase C-terminal domain BJD12_05620 PF02424 ApbE family BJD12_05625 PF00258 Flavodoxin BJD12_05625 PF00175 Oxidoreductase NAD-binding domain BJD12_05625 PF00667 FAD binding domain BJD12_05640 PF07687 Peptidase dimerisation domain BJD12_05640 PF01546 Peptidase family M20/M25/M40 BJD12_05650 PF01636 Phosphotransferase enzyme family BJD12_05655 PF00483 Nucleotidyl transferase BJD12_05660 PF00308 Bacterial dnaA protein BJD12_05665 PF01594 AI-2E family transporter BJD12_05675 PF00586 AIR synthase related protein, N-terminal domain BJD12_05675 PF02769 AIR synthase related protein, C-terminal domain BJD12_05690 PF00551 Formyl transferase BJD12_05720 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD12_05730 PF00571 CBS domain BJD12_05730 PF01380 SIS domain BJD12_05745 PF03968 OstA-like protein BJD12_05750 PF00005 ABC transporter BJD12_05755 PF04552 Sigma-54, DNA binding domain BJD12_05755 PF00309 Sigma-54 factor, Activator interacting domain (AID) BJD12_05755 PF04963 Sigma-54 factor, core binding domain BJD12_05760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BJD12_05765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BJD12_05770 PF07475 HPr Serine kinase C-terminal domain BJD12_05770 PF02603 HPr Serine kinase N terminus BJD12_05775 PF03668 P-loop ATPase protein family BJD12_05785 PF00381 PTS HPr component phosphorylation site BJD12_05790 PF02896 PEP-utilising enzyme, TIM barrel domain BJD12_05790 PF05524 PEP-utilising enzyme, N-terminal BJD12_05790 PF00391 PEP-utilising enzyme, mobile domain BJD12_05795 PF03448 MgtE intracellular N domain BJD12_05795 PF00571 CBS domain BJD12_05795 PF01769 Divalent cation transporter BJD12_05800 PF00756 Putative esterase BJD12_05805 PF02322 Cytochrome bd terminal oxidase subunit II BJD12_05810 PF01654 Cytochrome bd terminal oxidase subunit I BJD12_05815 PF00324 Amino acid permease BJD12_05820 PF00544 Pectate lyase BJD12_05830 PF00561 alpha/beta hydrolase fold BJD12_05835 PF00196 Bacterial regulatory proteins, luxR family BJD12_05840 PF00324 Amino acid permease BJD12_05895 PF09278 MerR, DNA binding BJD12_05895 PF00376 MerR family regulatory protein BJD12_05900 PF07690 Major Facilitator Superfamily BJD12_05910 PF03738 Glutathionylspermidine synthase preATP-grasp BJD12_05935 PF04012 PspA/IM30 family BJD12_05945 PF00583 Acetyltransferase (GNAT) family BJD12_05950 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BJD12_05950 PF01243 Pyridoxamine 5'-phosphate oxidase BJD12_05955 PF01202 Shikimate kinase BJD12_05960 PF01761 3-dehydroquinate synthase BJD12_05970 PF01208 Uroporphyrinogen decarboxylase (URO-D) BJD12_05975 PF07690 Major Facilitator Superfamily BJD12_05980 PF01627 Hpt domain BJD12_05980 PF00072 Response regulator receiver domain BJD12_05980 PF00672 HAMP domain BJD12_05980 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD12_05980 PF00512 His Kinase A (phospho-acceptor) domain BJD12_05980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_05985 PF00072 Response regulator receiver domain BJD12_05985 PF01627 Hpt domain BJD12_05985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_05985 PF00512 His Kinase A (phospho-acceptor) domain BJD12_05985 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD12_05985 PF00672 HAMP domain BJD12_05990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_05990 PF00072 Response regulator receiver domain BJD12_05990 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD12_05990 PF01627 Hpt domain BJD12_05990 PF00512 His Kinase A (phospho-acceptor) domain BJD12_05990 PF00672 HAMP domain BJD12_05995 PF04264 YceI-like domain BJD12_06010 PF00313 'Cold-shock' DNA-binding domain BJD12_06025 PF03313 Serine dehydratase alpha chain BJD12_06025 PF03315 Serine dehydratase beta chain BJD12_06030 PF12697 Alpha/beta hydrolase family BJD12_06035 PF00696 Amino acid kinase family BJD12_06035 PF00742 Homoserine dehydrogenase BJD12_06035 PF03447 Homoserine dehydrogenase, NAD binding domain BJD12_06040 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD12_06045 PF00561 alpha/beta hydrolase fold BJD12_06050 PF01551 Peptidase family M23 BJD12_06050 PF01476 LysM domain BJD12_06050 PF08525 Opacity-associated protein A N-terminal motif BJD12_06055 PF00009 Elongation factor Tu GTP binding domain BJD12_06055 PF16658 Class II release factor RF3, C-terminal domain BJD12_06060 PF03006 Haemolysin-III related BJD12_06065 PF05170 AsmA family BJD12_06075 PF00571 CBS domain BJD12_06075 PF00478 IMP dehydrogenase / GMP reductase domain BJD12_06080 PF00535 Glycosyl transferase family 2 BJD12_06085 PF00912 Transglycosylase BJD12_06090 PF01430 Hsp33 protein BJD12_06100 PF07715 TonB-dependent Receptor Plug Domain BJD12_06100 PF00593 TonB dependent receptor BJD12_06105 PF00440 Bacterial regulatory proteins, tetR family BJD12_06110 PF00561 alpha/beta hydrolase fold BJD12_06115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_06115 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_06115 PF09317 Domain of unknown function (DUF1974) BJD12_06115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_06145 PF01597 Glycine cleavage H-protein BJD12_06150 PF08669 Glycine cleavage T-protein C-terminal barrel domain BJD12_06150 PF01571 Aminomethyltransferase folate-binding domain BJD12_06160 PF01145 SPFH domain / Band 7 family BJD12_06160 PF16200 C-terminal region of band_7 BJD12_06165 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BJD12_06170 PF03819 MazG nucleotide pyrophosphohydrolase domain BJD12_06175 PF00459 Inositol monophosphatase family BJD12_06180 PF00293 NUDIX domain BJD12_06185 PF00202 Aminotransferase class-III BJD12_06190 PF04452 RNA methyltransferase BJD12_06195 PF02685 Glucokinase BJD12_06210 PF01476 LysM domain BJD12_06210 PF00704 Glycosyl hydrolases family 18 BJD12_06230 PF14310 Fibronectin type III-like domain BJD12_06230 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_06230 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_06230 PF07691 PA14 domain BJD12_06240 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD12_06240 PF07971 Glycosyl hydrolase family 92 BJD12_06245 PF01301 Glycosyl hydrolases family 35 BJD12_06280 PF03932 CutC family BJD12_06285 PF01112 Asparaginase BJD12_06290 PF12034 Domain of unknown function (DUF3520) BJD12_06290 PF12450 von Willebrand factor BJD12_06290 PF00092 von Willebrand factor type A domain BJD12_06305 PF13302 Acetyltransferase (GNAT) domain BJD12_06320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_06320 PF01584 CheW-like domain BJD12_06320 PF00072 Response regulator receiver domain BJD12_06320 PF01627 Hpt domain BJD12_06325 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BJD12_06325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_06330 PF01584 CheW-like domain BJD12_06335 PF00072 Response regulator receiver domain BJD12_06340 PF00072 Response regulator receiver domain BJD12_06345 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BJD12_06345 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BJD12_06355 PF03747 ADP-ribosylglycohydrolase BJD12_06360 PF00814 Glycoprotease family BJD12_06365 PF13307 Helicase C-terminal domain BJD12_06365 PF04851 Type III restriction enzyme, res subunit BJD12_06375 PF00912 Transglycosylase BJD12_06375 PF00905 Penicillin binding protein transpeptidase domain BJD12_06375 PF14814 Bifunctional transglycosylase second domain BJD12_06380 PF00535 Glycosyl transferase family 2 BJD12_06390 PF13291 ACT domain BJD12_06390 PF04607 Region found in RelA / SpoT proteins BJD12_06390 PF02824 TGS domain BJD12_06395 PF08042 PqqA family BJD12_06400 PF12706 Beta-lactamase superfamily domain BJD12_06405 PF03070 TENA/THI-4/PQQC family BJD12_06410 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BJD12_06430 PF02685 Glucokinase BJD12_06440 PF11898 Domain of unknown function (DUF3418) BJD12_06440 PF04408 Helicase associated domain (HA2) BJD12_06440 PF00271 Helicase conserved C-terminal domain BJD12_06440 PF00270 DEAD/DEAH box helicase BJD12_06440 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BJD12_06445 PF00210 Ferritin-like domain BJD12_06450 PF09382 RQC domain BJD12_06450 PF00570 HRDC domain BJD12_06450 PF16124 RecQ zinc-binding BJD12_06450 PF00271 Helicase conserved C-terminal domain BJD12_06450 PF00270 DEAD/DEAH box helicase BJD12_06470 PF00849 RNA pseudouridylate synthase BJD12_06470 PF01479 S4 domain BJD12_06480 PF00672 HAMP domain BJD12_06480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_06480 PF02203 Tar ligand binding domain homologue BJD12_06505 PF06508 Queuosine biosynthesis protein QueC BJD12_06510 PF04055 Radical SAM superfamily BJD12_06520 PF00691 OmpA family BJD12_06525 PF07676 WD40-like Beta Propeller Repeat BJD12_06525 PF04052 TolB amino-terminal domain BJD12_06535 PF02472 Biopolymer transport protein ExbD/TolR BJD12_06540 PF01618 MotA/TolQ/ExbB proton channel family BJD12_06545 PF03061 Thioesterase superfamily BJD12_06550 PF05496 Holliday junction DNA helicase RuvB P-loop domain BJD12_06550 PF05491 RuvB C-terminal winged helix domain BJD12_06550 PF17864 RuvB AAA lid domain BJD12_06560 PF02705 K+ potassium transporter BJD12_06565 PF07499 RuvA, C-terminal domain BJD12_06565 PF01330 RuvA N terminal domain BJD12_06570 PF02075 Crossover junction endodeoxyribonuclease RuvC BJD12_06575 PF01709 Transcriptional regulator BJD12_06590 PF02938 GAD domain BJD12_06590 PF00152 tRNA synthetases class II (D, K and N) BJD12_06590 PF01336 OB-fold nucleic acid binding domain BJD12_06610 PF07690 Major Facilitator Superfamily BJD12_06625 PF00753 Metallo-beta-lactamase superfamily BJD12_06635 PF01925 Sulfite exporter TauE/SafE BJD12_06650 PF05506 Domain of unknown function (DUF756) BJD12_06650 PF04185 Phosphoesterase family BJD12_06655 PF07859 alpha/beta hydrolase fold BJD12_06655 PF13472 GDSL-like Lipase/Acylhydrolase family BJD12_06665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_06665 PF03466 LysR substrate binding domain BJD12_06670 PF13406 Transglycosylase SLT domain BJD12_06680 PF00005 ABC transporter BJD12_06680 PF12848 ABC transporter BJD12_06685 PF07715 TonB-dependent Receptor Plug Domain BJD12_06685 PF00593 TonB dependent receptor BJD12_06695 PF07715 TonB-dependent Receptor Plug Domain BJD12_06695 PF00593 TonB dependent receptor BJD12_06700 PF00593 TonB dependent receptor BJD12_06700 PF07715 TonB-dependent Receptor Plug Domain BJD12_06705 PF00067 Cytochrome P450 BJD12_06715 PF02254 TrkA-N domain BJD12_06715 PF00999 Sodium/hydrogen exchanger family BJD12_06720 PF03328 HpcH/HpaI aldolase/citrate lyase family BJD12_06725 PF07715 TonB-dependent Receptor Plug Domain BJD12_06725 PF00593 TonB dependent receptor BJD12_06725 PF07660 Secretin and TonB N terminus short domain BJD12_06735 PF06276 Ferric iron reductase FhuF-like transporter BJD12_06735 PF04183 IucA / IucC family BJD12_06740 PF07690 Major Facilitator Superfamily BJD12_06745 PF04183 IucA / IucC family BJD12_06745 PF06276 Ferric iron reductase FhuF-like transporter BJD12_06750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BJD12_06750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD12_06760 PF02654 Cobalamin-5-phosphate synthase BJD12_06770 PF02277 Phosphoribosyltransferase BJD12_06775 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BJD12_06780 PF07685 CobB/CobQ-like glutamine amidotransferase domain BJD12_06780 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD12_06785 PF00155 Aminotransferase class I and II BJD12_06790 PF17113 Regulatory signalling modulator protein AmpE BJD12_06790 PF03186 CobD/Cbib protein BJD12_06795 PF12557 Cob(I)alamin adenosyltransferase N terminal BJD12_06795 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BJD12_06810 PF07715 TonB-dependent Receptor Plug Domain BJD12_06810 PF00593 TonB dependent receptor BJD12_06815 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD12_06820 PF17871 AAA lid domain BJD12_06820 PF10431 C-terminal, D2-small domain, of ClpB protein BJD12_06820 PF02861 Clp amino terminal domain, pathogenicity island component BJD12_06820 PF07724 AAA domain (Cdc48 subfamily) BJD12_06820 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_06825 PF01541 GIY-YIG catalytic domain BJD12_06860 PF07715 TonB-dependent Receptor Plug Domain BJD12_06860 PF00593 TonB dependent receptor BJD12_06865 PF02358 Trehalose-phosphatase BJD12_06870 PF00723 Glycosyl hydrolases family 15 BJD12_06875 PF00982 Glycosyltransferase family 20 BJD12_06880 PF01011 PQQ enzyme repeat BJD12_06885 PF00672 HAMP domain BJD12_06885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_06885 PF02203 Tar ligand binding domain homologue BJD12_06905 PF00849 RNA pseudouridylate synthase BJD12_06910 PF13525 Outer membrane lipoprotein BJD12_06920 PF00795 Carbon-nitrogen hydrolase BJD12_06920 PF02540 NAD synthase BJD12_06935 PF00549 CoA-ligase BJD12_06935 PF08442 ATP-grasp domain BJD12_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_06940 PF00512 His Kinase A (phospho-acceptor) domain BJD12_06945 PF02954 Bacterial regulatory protein, Fis family BJD12_06945 PF00158 Sigma-54 interaction domain BJD12_06945 PF00072 Response regulator receiver domain BJD12_06950 PF00437 Type II/IV secretion system protein BJD12_06950 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD12_06955 PF00114 Pilin (bacterial filament) BJD12_06955 PF07963 Prokaryotic N-terminal methylation motif BJD12_06960 PF00114 Pilin (bacterial filament) BJD12_06960 PF07963 Prokaryotic N-terminal methylation motif BJD12_06965 PF00482 Type II secretion system (T2SS), protein F BJD12_06970 PF01478 Type IV leader peptidase family BJD12_06970 PF06750 Bacterial Peptidase A24 N-terminal domain BJD12_06975 PF01121 Dephospho-CoA kinase BJD12_06980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_06980 PF11808 Phosphate regulon sensor protein PhoR BJD12_06980 PF00512 His Kinase A (phospho-acceptor) domain BJD12_06980 PF00989 PAS fold BJD12_06985 PF00072 Response regulator receiver domain BJD12_06985 PF00486 Transcriptional regulatory protein, C terminal BJD12_06995 PF18030 RimK PreATP-grasp domain BJD12_06995 PF08443 RimK-like ATP-grasp domain BJD12_07000 PF00128 Alpha amylase, catalytic domain BJD12_07000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD12_07130 PF00069 Protein kinase domain BJD12_07130 PF03793 PASTA domain BJD12_07180 PF00657 GDSL-like Lipase/Acylhydrolase BJD12_07180 PF03797 Autotransporter beta-domain BJD12_07190 PF05690 Thiazole biosynthesis protein ThiG BJD12_07195 PF02390 Putative methyltransferase BJD12_07200 PF02080 TrkA-C domain BJD12_07200 PF03600 Citrate transporter BJD12_07215 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD12_07220 PF01741 Large-conductance mechanosensitive channel, MscL BJD12_07230 PF00356 Bacterial regulatory proteins, lacI family BJD12_07240 PF00553 Cellulose binding domain BJD12_07240 PF00041 Fibronectin type III domain BJD12_07240 PF01341 Glycosyl hydrolases family 6 BJD12_07250 PF00703 Glycosyl hydrolases family 2 BJD12_07250 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD12_07250 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain BJD12_07255 PF10566 Glycoside hydrolase 97 BJD12_07255 PF14508 Glycosyl-hydrolase 97 N-terminal BJD12_07255 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation BJD12_07260 PF00135 Carboxylesterase family BJD12_07265 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD12_07265 PF00588 SpoU rRNA Methylase family BJD12_07270 PF01235 Sodium:alanine symporter family BJD12_07280 PF01433 Peptidase family M1 domain BJD12_07280 PF11838 ERAP1-like C-terminal domain BJD12_07285 PF00873 AcrB/AcrD/AcrF family BJD12_07290 PF00529 HlyD membrane-fusion protein of T1SS BJD12_07290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_07295 PF00009 Elongation factor Tu GTP binding domain BJD12_07300 PF01507 Phosphoadenosine phosphosulfate reductase family BJD12_07305 PF00175 Oxidoreductase NAD-binding domain BJD12_07305 PF00667 FAD binding domain BJD12_07305 PF00258 Flavodoxin BJD12_07310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BJD12_07310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BJD12_07315 PF01507 Phosphoadenosine phosphosulfate reductase family BJD12_07335 PF00512 His Kinase A (phospho-acceptor) domain BJD12_07335 PF00672 HAMP domain BJD12_07335 PF00072 Response regulator receiver domain BJD12_07335 PF01627 Hpt domain BJD12_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_07345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_07345 PF03466 LysR substrate binding domain BJD12_07350 PF10414 Sirohaem synthase dimerisation region BJD12_07350 PF14824 Sirohaem biosynthesis protein central BJD12_07350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD12_07355 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_07365 PF01661 Macro domain BJD12_07370 PF00274 Fructose-bisphosphate aldolase class-I BJD12_07380 PF02887 Pyruvate kinase, alpha/beta domain BJD12_07380 PF00224 Pyruvate kinase, barrel domain BJD12_07390 PF00162 Phosphoglycerate kinase BJD12_07410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD12_07410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BJD12_07430 PF03922 OmpW family BJD12_07440 PF00753 Metallo-beta-lactamase superfamily BJD12_07440 PF04273 Putative phosphatase (DUF442) BJD12_07450 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_07455 PF00005 ABC transporter BJD12_07455 PF03459 TOBE domain BJD12_07470 PF03965 Penicillinase repressor BJD12_07490 PF01476 LysM domain BJD12_07490 PF03734 L,D-transpeptidase catalytic domain BJD12_07495 PF01551 Peptidase family M23 BJD12_07495 PF04225 Opacity-associated protein A LysM-like domain BJD12_07510 PF03466 LysR substrate binding domain BJD12_07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_07515 PF00593 TonB dependent receptor BJD12_07515 PF07715 TonB-dependent Receptor Plug Domain BJD12_07520 PF02780 Transketolase, C-terminal domain BJD12_07520 PF00456 Transketolase, thiamine diphosphate binding domain BJD12_07520 PF02779 Transketolase, pyrimidine binding domain BJD12_07525 PF00375 Sodium:dicarboxylate symporter family BJD12_07535 PF07584 Aerotolerance regulator N-terminal BJD12_07535 PF00092 von Willebrand factor type A domain BJD12_07555 PF17863 AAA lid domain BJD12_07555 PF07726 ATPase family associated with various cellular activities (AAA) BJD12_07560 PF11741 AMIN domain BJD12_07560 PF00263 Bacterial type II and III secretion system protein BJD12_07560 PF03958 Bacterial type II/III secretion system short domain BJD12_07560 PF07660 Secretin and TonB N terminus short domain BJD12_07585 PF00905 Penicillin binding protein transpeptidase domain BJD12_07585 PF17092 Penicillin-binding protein OB-like domain BJD12_07585 PF00912 Transglycosylase BJD12_07600 PF00285 Citrate synthase, C-terminal domain BJD12_07605 PF01197 Ribosomal protein L31 BJD12_07610 PF01156 Inosine-uridine preferring nucleoside hydrolase BJD12_07615 PF00270 DEAD/DEAH box helicase BJD12_07615 PF17191 RecG wedge domain BJD12_07615 PF00271 Helicase conserved C-terminal domain BJD12_07620 PF01042 Endoribonuclease L-PSP BJD12_07630 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BJD12_07630 PF08666 SAF domain BJD12_07635 PF03573 outer membrane porin, OprD family BJD12_07640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD12_07640 PF13378 Enolase C-terminal domain-like BJD12_07645 PF07690 Major Facilitator Superfamily BJD12_07650 PF00171 Aldehyde dehydrogenase family BJD12_07655 PF00701 Dihydrodipicolinate synthetase family BJD12_07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_07660 PF03466 LysR substrate binding domain BJD12_07670 PF04607 Region found in RelA / SpoT proteins BJD12_07670 PF13291 ACT domain BJD12_07670 PF02824 TGS domain BJD12_07675 PF13419 Haloacid dehalogenase-like hydrolase BJD12_07680 PF04198 Putative sugar-binding domain BJD12_07690 PF04966 Carbohydrate-selective porin, OprB family BJD12_07695 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_07700 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_07705 PF08402 TOBE domain BJD12_07705 PF00005 ABC transporter BJD12_07720 PF01192 RNA polymerase Rpb6 BJD12_07725 PF00625 Guanylate kinase BJD12_07730 PF03755 YicC-like family, N-terminal region BJD12_07730 PF08340 Domain of unknown function (DUF1732) BJD12_07735 PF01138 3' exoribonuclease family, domain 1 BJD12_07735 PF03725 3' exoribonuclease family, domain 2 BJD12_07745 PF01725 Ham1 family BJD12_07750 PF06969 HemN C-terminal domain BJD12_07750 PF04055 Radical SAM superfamily BJD12_07765 PF00557 Metallopeptidase family M24 BJD12_07780 PF00557 Metallopeptidase family M24 BJD12_07780 PF05195 Aminopeptidase P, N-terminal domain BJD12_07785 PF03695 Uncharacterised protein family (UPF0149) BJD12_07795 PF05164 Cell division protein ZapA BJD12_07805 PF01812 5-formyltetrahydrofolate cyclo-ligase family BJD12_07815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BJD12_07825 PF13369 Transglutaminase-like superfamily BJD12_07830 PF00301 Rubredoxin BJD12_07835 PF02581 Thiamine monophosphate synthase BJD12_07855 PF01464 Transglycosylase SLT domain BJD12_07890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD12_07890 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD12_07890 PF18269 T3SS EscN ATPase C-terminal domain BJD12_07905 PF01514 Secretory protein of YscJ/FliF family BJD12_07920 PF01312 FlhB HrpN YscU SpaS Family BJD12_07925 PF00771 FHIPEP family BJD12_07940 PF00813 FliP family BJD12_07945 PF01313 Bacterial export proteins, family 3 BJD12_08030 PF01527 Transposase BJD12_08035 PF13276 HTH-like domain BJD12_08035 PF00665 Integrase core domain BJD12_08035 PF13333 Integrase core domain BJD12_08040 PF05819 NolX protein BJD12_08070 PF00202 Aminotransferase class-III BJD12_08075 PF17874 MalT-like TPR region BJD12_08075 PF00196 Bacterial regulatory proteins, luxR family BJD12_08080 PF00127 Copper binding proteins, plastocyanin/azurin family BJD12_08085 PF00155 Aminotransferase class I and II BJD12_08095 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BJD12_08095 PF00034 Cytochrome c BJD12_08100 PF01593 Flavin containing amine oxidoreductase BJD12_08120 PF00202 Aminotransferase class-III BJD12_08125 PF00027 Cyclic nucleotide-binding domain BJD12_08125 PF00520 Ion transport protein BJD12_08155 PF01569 PAP2 superfamily BJD12_08160 PF01062 Bestrophin, RFP-TM, chloride channel BJD12_08170 PF02875 Mur ligase family, glutamate ligase domain BJD12_08170 PF01225 Mur ligase family, catalytic domain BJD12_08170 PF08245 Mur ligase middle domain BJD12_08180 PF00365 Phosphofructokinase BJD12_08195 PF03030 Inorganic H+ pyrophosphatase BJD12_08205 PF00719 Inorganic pyrophosphatase BJD12_08215 PF00593 TonB dependent receptor BJD12_08215 PF07715 TonB-dependent Receptor Plug Domain BJD12_08220 PF12833 Helix-turn-helix domain BJD12_08225 PF00486 Transcriptional regulatory protein, C terminal BJD12_08225 PF18500 CadC C-terminal domain 1 BJD12_08230 PF13667 ThiC-associated domain BJD12_08230 PF01964 Radical SAM ThiC family BJD12_08235 PF07676 WD40-like Beta Propeller Repeat BJD12_08235 PF00326 Prolyl oligopeptidase family BJD12_08240 PF00672 HAMP domain BJD12_08240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_08250 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BJD12_08250 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BJD12_08255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD12_08255 PF00205 Thiamine pyrophosphate enzyme, central domain BJD12_08255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD12_08265 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_08270 PF00682 HMGL-like BJD12_08270 PF08502 LeuA allosteric (dimerisation) domain BJD12_08280 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD12_08285 PF08241 Methyltransferase domain BJD12_08290 PF00694 Aconitase C-terminal domain BJD12_08295 PF00330 Aconitase family (aconitate hydratase) BJD12_08300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_08305 PF00990 Diguanylate cyclase, GGDEF domain BJD12_08305 PF17151 Periplasmic sensor domain BJD12_08320 PF02321 Outer membrane efflux protein BJD12_08325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BJD12_08330 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD12_08355 PF03949 Malic enzyme, NAD binding domain BJD12_08355 PF00390 Malic enzyme, N-terminal domain BJD12_08355 PF01515 Phosphate acetyl/butaryl transferase BJD12_08360 PF00375 Sodium:dicarboxylate symporter family BJD12_08370 PF00512 His Kinase A (phospho-acceptor) domain BJD12_08370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_08380 PF00593 TonB dependent receptor BJD12_08380 PF07715 TonB-dependent Receptor Plug Domain BJD12_08385 PF00248 Aldo/keto reductase family BJD12_08400 PF00072 Response regulator receiver domain BJD12_08400 PF00196 Bacterial regulatory proteins, luxR family BJD12_08410 PF00512 His Kinase A (phospho-acceptor) domain BJD12_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_08410 PF08521 Two-component sensor kinase N-terminal BJD12_08415 PF00486 Transcriptional regulatory protein, C terminal BJD12_08415 PF00072 Response regulator receiver domain BJD12_08425 PF03600 Citrate transporter BJD12_08430 PF00106 short chain dehydrogenase BJD12_08435 PF00356 Bacterial regulatory proteins, lacI family BJD12_08450 PF00128 Alpha amylase, catalytic domain BJD12_08465 PF03193 RsgA GTPase BJD12_08470 PF00155 Aminotransferase class I and II BJD12_08485 PF01522 Polysaccharide deacetylase BJD12_08490 PF00462 Glutaredoxin BJD12_08505 PF01979 Amidohydrolase family BJD12_08510 PF01979 Amidohydrolase family BJD12_08550 PF02645 Uncharacterised protein, DegV family COG1307 BJD12_08560 PF00756 Putative esterase BJD12_08565 PF04828 Glutathione-dependent formaldehyde-activating enzyme BJD12_08570 PF00107 Zinc-binding dehydrogenase BJD12_08570 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_08575 PF02583 Metal-sensitive transcriptional repressor BJD12_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_08580 PF03466 LysR substrate binding domain BJD12_08595 PF00072 Response regulator receiver domain BJD12_08595 PF00486 Transcriptional regulatory protein, C terminal BJD12_08600 PF00672 HAMP domain BJD12_08600 PF00512 His Kinase A (phospho-acceptor) domain BJD12_08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_08610 PF04107 Glutamate-cysteine ligase family 2(GCS2) BJD12_08630 PF01926 50S ribosome-binding GTPase BJD12_08635 PF00034 Cytochrome c BJD12_08640 PF01323 DSBA-like thioredoxin domain BJD12_08645 PF01323 DSBA-like thioredoxin domain BJD12_08655 PF02028 BCCT, betaine/carnitine/choline family transporter BJD12_08660 PF00171 Aldehyde dehydrogenase family BJD12_08665 PF05199 GMC oxidoreductase BJD12_08665 PF00732 GMC oxidoreductase BJD12_08680 PF01494 FAD binding domain BJD12_08685 PF07715 TonB-dependent Receptor Plug Domain BJD12_08685 PF00593 TonB dependent receptor BJD12_08690 PF01464 Transglycosylase SLT domain BJD12_08690 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BJD12_08695 PF00544 Pectate lyase BJD12_08715 PF01066 CDP-alcohol phosphatidyltransferase BJD12_08725 PF04073 Aminoacyl-tRNA editing domain BJD12_08725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD12_08725 PF03129 Anticodon binding domain BJD12_08730 PF00816 H-NS histone family BJD12_08740 PF02405 Permease MlaE BJD12_08745 PF00005 ABC transporter BJD12_08750 PF03886 ABC-type transport auxiliary lipoprotein component BJD12_08750 PF02470 MlaD protein BJD12_08780 PF05045 Rhamnan synthesis protein F BJD12_08780 PF14307 Glycosyltransferase WbsX BJD12_08785 PF01144 Coenzyme A transferase BJD12_08790 PF01144 Coenzyme A transferase BJD12_08795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD12_08795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD12_08795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD12_08795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD12_08800 PF01050 Mannose-6-phosphate isomerase BJD12_08800 PF00483 Nucleotidyl transferase BJD12_08805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BJD12_08805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BJD12_08805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BJD12_08810 PF04321 RmlD substrate binding domain BJD12_08815 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BJD12_08820 PF00483 Nucleotidyl transferase BJD12_08825 PF16363 GDP-mannose 4,6 dehydratase BJD12_08830 PF01012 Electron transfer flavoprotein domain BJD12_08835 PF00766 Electron transfer flavoprotein FAD-binding domain BJD12_08835 PF01012 Electron transfer flavoprotein domain BJD12_08840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD12_08845 PF00535 Glycosyl transferase family 2 BJD12_08865 PF16363 GDP-mannose 4,6 dehydratase BJD12_08870 PF16363 GDP-mannose 4,6 dehydratase BJD12_08885 PF13439 Glycosyltransferase Family 4 BJD12_08885 PF00534 Glycosyl transferases group 1 BJD12_08890 PF13847 Methyltransferase domain BJD12_08890 PF00069 Protein kinase domain BJD12_08910 PF01053 Cys/Met metabolism PLP-dependent enzyme BJD12_08915 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_08915 PF00571 CBS domain BJD12_08935 PF00437 Type II/IV secretion system protein BJD12_08940 PF14497 Glutathione S-transferase, C-terminal domain BJD12_08940 PF02798 Glutathione S-transferase, N-terminal domain BJD12_08955 PF00271 Helicase conserved C-terminal domain BJD12_08955 PF00270 DEAD/DEAH box helicase BJD12_08960 PF01242 6-pyruvoyl tetrahydropterin synthase BJD12_08975 PF13185 GAF domain BJD12_08990 PF13419 Haloacid dehalogenase-like hydrolase BJD12_09000 PF11799 impB/mucB/samB family C-terminal domain BJD12_09000 PF00817 impB/mucB/samB family BJD12_09005 PF07977 FabA-like domain BJD12_09025 PF01432 Peptidase family M3 BJD12_09040 PF00394 Multicopper oxidase BJD12_09040 PF07732 Multicopper oxidase BJD12_09040 PF07731 Multicopper oxidase BJD12_09045 PF05275 Copper resistance protein B precursor (CopB) BJD12_09050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD12_09075 PF01380 SIS domain BJD12_09080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_09085 PF00005 ABC transporter BJD12_09085 PF12704 MacB-like periplasmic core domain BJD12_09085 PF02687 FtsX-like permease family BJD12_09090 PF02687 FtsX-like permease family BJD12_09090 PF12704 MacB-like periplasmic core domain BJD12_09095 PF12704 MacB-like periplasmic core domain BJD12_09095 PF02687 FtsX-like permease family BJD12_09095 PF00005 ABC transporter BJD12_09105 PF02954 Bacterial regulatory protein, Fis family BJD12_09105 PF00072 Response regulator receiver domain BJD12_09105 PF00158 Sigma-54 interaction domain BJD12_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_09110 PF00512 His Kinase A (phospho-acceptor) domain BJD12_09120 PF00132 Bacterial transferase hexapeptide (six repeats) BJD12_09120 PF14602 Hexapeptide repeat of succinyl-transferase BJD12_09120 PF12804 MobA-like NTP transferase domain BJD12_09130 PF01817 Chorismate mutase type II BJD12_09135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BJD12_09135 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BJD12_09140 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD12_09140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD12_09145 PF00231 ATP synthase BJD12_09150 PF02874 ATP synthase alpha/beta family, beta-barrel domain BJD12_09150 PF00306 ATP synthase alpha/beta chain, C terminal domain BJD12_09150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD12_09155 PF00213 ATP synthase delta (OSCP) subunit BJD12_09160 PF00430 ATP synthase B/B' CF(0) BJD12_09165 PF00137 ATP synthase subunit C BJD12_09170 PF00119 ATP synthase A chain BJD12_09185 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_09185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD12_09195 PF02817 e3 binding domain BJD12_09195 PF00364 Biotin-requiring enzyme BJD12_09195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD12_09220 PF03180 NLPA lipoprotein BJD12_09225 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_09230 PF00005 ABC transporter BJD12_09230 PF09383 NIL domain BJD12_09235 PF00892 EamA-like transporter family BJD12_09240 PF04461 Protein of unknown function (DUF520) BJD12_09250 PF00512 His Kinase A (phospho-acceptor) domain BJD12_09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_09250 PF00072 Response regulator receiver domain BJD12_09250 PF09308 LuxQ, periplasmic BJD12_09270 PF13419 Haloacid dehalogenase-like hydrolase BJD12_09275 PF01479 S4 domain BJD12_09275 PF00849 RNA pseudouridylate synthase BJD12_09280 PF05175 Methyltransferase small domain BJD12_09280 PF08468 Methyltransferase small domain N-terminal BJD12_09290 PF07995 Glucose / Sorbosone dehydrogenase BJD12_09300 PF09308 LuxQ, periplasmic BJD12_09300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_09300 PF00512 His Kinase A (phospho-acceptor) domain BJD12_09300 PF00072 Response regulator receiver domain BJD12_09320 PF01168 Alanine racemase, N-terminal domain BJD12_09320 PF00842 Alanine racemase, C-terminal domain BJD12_09325 PF01266 FAD dependent oxidoreductase BJD12_09330 PF01037 Lrp/AsnC ligand binding domain BJD12_09340 PF01641 SelR domain BJD12_09350 PF01618 MotA/TolQ/ExbB proton channel family BJD12_09355 PF00691 OmpA family BJD12_09355 PF13677 Membrane MotB of proton-channel complex MotA/MotB BJD12_09380 PF01061 ABC-2 type transporter BJD12_09385 PF00005 ABC transporter BJD12_09390 PF00999 Sodium/hydrogen exchanger family BJD12_09410 PF02469 Fasciclin domain BJD12_09415 PF03167 Uracil DNA glycosylase superfamily BJD12_09430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD12_09440 PF03466 LysR substrate binding domain BJD12_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_09450 PF03358 NADPH-dependent FMN reductase BJD12_09460 PF00248 Aldo/keto reductase family BJD12_09470 PF01431 Peptidase family M13 BJD12_09470 PF05649 Peptidase family M13 BJD12_09490 PF13520 Amino acid permease BJD12_09500 PF04397 LytTr DNA-binding domain BJD12_09500 PF00072 Response regulator receiver domain BJD12_09505 PF06580 Histidine kinase BJD12_09505 PF07694 5TMR of 5TMR-LYT BJD12_09520 PF05974 Domain of unknown function (DUF892) BJD12_09525 PF05067 Manganese containing catalase BJD12_09540 PF01339 CheB methylesterase BJD12_09540 PF08448 PAS fold BJD12_09540 PF03705 CheR methyltransferase, all-alpha domain BJD12_09540 PF01739 CheR methyltransferase, SAM binding domain BJD12_09555 PF00158 Sigma-54 interaction domain BJD12_09555 PF00072 Response regulator receiver domain BJD12_09555 PF02954 Bacterial regulatory protein, Fis family BJD12_09565 PF01654 Cytochrome bd terminal oxidase subunit I BJD12_09570 PF02322 Cytochrome bd terminal oxidase subunit II BJD12_09595 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_09595 PF00107 Zinc-binding dehydrogenase BJD12_09595 PF13823 Alcohol dehydrogenase GroES-associated BJD12_09620 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD12_09620 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_09670 PF00005 ABC transporter BJD12_09675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_09675 PF03466 LysR substrate binding domain BJD12_09680 PF01042 Endoribonuclease L-PSP BJD12_09710 PF00654 Voltage gated chloride channel BJD12_09720 PF00557 Metallopeptidase family M24 BJD12_09730 PF01638 HxlR-like helix-turn-helix BJD12_09740 PF02630 SCO1/SenC BJD12_09750 PF00857 Isochorismatase family BJD12_09755 PF02311 AraC-like ligand binding domain BJD12_09755 PF12833 Helix-turn-helix domain BJD12_09805 PF04539 Sigma-70 region 3 BJD12_09805 PF04542 Sigma-70 region 2 BJD12_09805 PF00140 Sigma-70 factor, region 1.2 BJD12_09805 PF03979 Sigma-70 factor, region 1.1 BJD12_09805 PF04546 Sigma-70, non-essential region BJD12_09805 PF04545 Sigma-70, region 4 BJD12_09810 PF02580 D-Tyr-tRNA(Tyr) deacylase BJD12_09815 PF03279 Bacterial lipid A biosynthesis acyltransferase BJD12_09820 PF00583 Acetyltransferase (GNAT) family BJD12_09825 PF00925 GTP cyclohydrolase II BJD12_09845 PF00535 Glycosyl transferase family 2 BJD12_09865 PF02911 Formyl transferase, C-terminal domain BJD12_09865 PF00551 Formyl transferase BJD12_09870 PF01327 Polypeptide deformylase BJD12_09875 PF01476 LysM domain BJD12_09880 PF17782 DprA winged helix domain BJD12_09880 PF02481 DNA recombination-mediator protein A BJD12_09885 PF04361 Protein of unknown function (DUF494) BJD12_09890 PF00114 Pilin (bacterial filament) BJD12_09890 PF07963 Prokaryotic N-terminal methylation motif BJD12_09900 PF13368 Topoisomerase C-terminal repeat BJD12_09900 PF01751 Toprim domain BJD12_09900 PF01131 DNA topoisomerase BJD12_09905 PF01300 Telomere recombination BJD12_09930 PF01343 Peptidase family S49 BJD12_09935 PF01554 MatE BJD12_09955 PF18074 Primosomal protein N C-terminal domain BJD12_09955 PF00270 DEAD/DEAH box helicase BJD12_09955 PF17764 3′ DNA-binding domain (3′BD) BJD12_09955 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BJD12_09955 PF00271 Helicase conserved C-terminal domain BJD12_09960 PF13417 Glutathione S-transferase, N-terminal domain BJD12_09960 PF00043 Glutathione S-transferase, C-terminal domain BJD12_09975 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_09980 PF03458 UPF0126 domain BJD12_09985 PF03458 UPF0126 domain BJD12_09990 PF04545 Sigma-70, region 4 BJD12_09990 PF04542 Sigma-70 region 2 BJD12_09995 PF03167 Uracil DNA glycosylase superfamily BJD12_10000 PF00072 Response regulator receiver domain BJD12_10005 PF18075 FtsX extracellular domain BJD12_10010 PF00005 ABC transporter BJD12_10015 PF12300 ATP-dependent RNA helicase RhlB BJD12_10015 PF00271 Helicase conserved C-terminal domain BJD12_10015 PF00270 DEAD/DEAH box helicase BJD12_10020 PF00085 Thioredoxin BJD12_10025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BJD12_10025 PF07498 Rho termination factor, N-terminal domain BJD12_10025 PF07497 Rho termination factor, RNA-binding domain BJD12_10035 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BJD12_10040 PF03466 LysR substrate binding domain BJD12_10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_10050 PF03971 Monomeric isocitrate dehydrogenase BJD12_10060 PF04972 BON domain BJD12_10060 PF01476 LysM domain BJD12_10065 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BJD12_10065 PF14489 QueF-like protein BJD12_10070 PF01546 Peptidase family M20/M25/M40 BJD12_10070 PF07687 Peptidase dimerisation domain BJD12_10075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_10085 PF00873 AcrB/AcrD/AcrF family BJD12_10100 PF07063 Domain of unknown function (DUF1338) BJD12_10140 PF01427 D-ala-D-ala dipeptidase BJD12_10145 PF01510 N-acetylmuramoyl-L-alanine amidase BJD12_10155 PF13378 Enolase C-terminal domain-like BJD12_10155 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD12_10165 PF13520 Amino acid permease BJD12_10180 PF05360 yiaA/B two helix domain BJD12_10185 PF07995 Glucose / Sorbosone dehydrogenase BJD12_10190 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_10190 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_10190 PF14310 Fibronectin type III-like domain BJD12_10195 PF02152 Dihydroneopterin aldolase BJD12_10200 PF00814 Glycoprotease family BJD12_10205 PF01165 Ribosomal protein S21 BJD12_10210 PF09424 Yqey-like protein BJD12_10215 PF03631 Virulence factor BrkB BJD12_10220 PF01807 CHC2 zinc finger BJD12_10220 PF10410 DnaB-helicase binding domain of primase BJD12_10220 PF08275 DNA primase catalytic core, N-terminal domain BJD12_10220 PF08278 DNA primase DnaG DnaB-binding BJD12_10235 PF13593 SBF-like CPA transporter family (DUF4137) BJD12_10245 PF01040 UbiA prenyltransferase family BJD12_10270 PF00510 Cytochrome c oxidase subunit III BJD12_10275 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 BJD12_10285 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD12_10290 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BJD12_10290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BJD12_10300 PF01619 Proline dehydrogenase BJD12_10300 PF14850 DNA-binding domain of Proline dehydrogenase BJD12_10300 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BJD12_10300 PF00171 Aldehyde dehydrogenase family BJD12_10330 PF00579 tRNA synthetases class I (W and Y) BJD12_10335 PF01551 Peptidase family M23 BJD12_10335 PF04225 Opacity-associated protein A LysM-like domain BJD12_10340 PF03702 Anhydro-N-acetylmuramic acid kinase BJD12_10350 PF07690 Major Facilitator Superfamily BJD12_10360 PF03372 Endonuclease/Exonuclease/phosphatase family BJD12_10365 PF00156 Phosphoribosyl transferase domain BJD12_10375 PF13614 AAA domain BJD12_10380 PF02195 ParB-like nuclease domain BJD12_10380 PF17762 HTH domain found in ParB protein BJD12_10395 PF01370 NAD dependent epimerase/dehydratase family BJD12_10400 PF00535 Glycosyl transferase family 2 BJD12_10415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BJD12_10415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BJD12_10415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BJD12_10415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BJD12_10420 PF00692 dUTPase BJD12_10425 PF02441 Flavoprotein BJD12_10425 PF04127 DNA / pantothenate metabolism flavoprotein BJD12_10430 PF04002 RadC-like JAB domain BJD12_10435 PF05746 DALR anticodon binding domain BJD12_10435 PF03485 Arginyl tRNA synthetase N terminal domain BJD12_10435 PF00750 tRNA synthetases class I (R) BJD12_10450 PF00106 short chain dehydrogenase BJD12_10455 PF01757 Acyltransferase family BJD12_10465 PF03033 Glycosyltransferase family 28 N-terminal domain BJD12_10475 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BJD12_10475 PF17944 Arginine decarboxylase C-terminal helical extension BJD12_10475 PF17810 Arginine decarboxylase helical bundle domain BJD12_10480 PF17284 Spermidine synthase tetramerisation domain BJD12_10500 PF07555 beta-N-acetylglucosaminidase BJD12_10500 PF00041 Fibronectin type III domain BJD12_10500 PF00754 F5/8 type C domain BJD12_10500 PF00963 Cohesin domain BJD12_10500 PF02838 Glycosyl hydrolase family 20, domain 2 BJD12_10505 PF00543 Nitrogen regulatory protein P-II BJD12_10510 PF04380 Membrane fusogenic activity BJD12_10515 PF13335 Magnesium chelatase, subunit ChlI C-terminal BJD12_10515 PF01078 Magnesium chelatase, subunit ChlI BJD12_10530 PF00563 EAL domain BJD12_10530 PF12792 CSS motif domain associated with EAL BJD12_10535 PF00487 Fatty acid desaturase BJD12_10540 PF00175 Oxidoreductase NAD-binding domain BJD12_10540 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD12_10540 PF00970 Oxidoreductase FAD-binding domain BJD12_10545 PF00440 Bacterial regulatory proteins, tetR family BJD12_10560 PF01139 tRNA-splicing ligase RtcB BJD12_10595 PF01370 NAD dependent epimerase/dehydratase family BJD12_10595 PF08338 Domain of unknown function (DUF1731) BJD12_10600 PF00072 Response regulator receiver domain BJD12_10600 PF00486 Transcriptional regulatory protein, C terminal BJD12_10605 PF08521 Two-component sensor kinase N-terminal BJD12_10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_10605 PF00512 His Kinase A (phospho-acceptor) domain BJD12_10625 PF00595 PDZ domain BJD12_10625 PF13180 PDZ domain BJD12_10645 PF01594 AI-2E family transporter BJD12_10655 PF00883 Cytosol aminopeptidase family, catalytic domain BJD12_10655 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD12_10665 PF00199 Catalase BJD12_10680 PF00196 Bacterial regulatory proteins, luxR family BJD12_10680 PF00072 Response regulator receiver domain BJD12_10690 PF07730 Histidine kinase BJD12_10695 PF13533 Biotin-lipoyl like BJD12_10700 PF00005 ABC transporter BJD12_10720 PF00892 EamA-like transporter family BJD12_10725 PF00892 EamA-like transporter family BJD12_10740 PF00753 Metallo-beta-lactamase superfamily BJD12_10745 PF00579 tRNA synthetases class I (W and Y) BJD12_10750 PF05532 CsbD-like BJD12_10765 PF00491 Arginase family BJD12_10790 PF02223 Thymidylate kinase BJD12_10805 PF03309 Type III pantothenate kinase BJD12_10810 PF08279 HTH domain BJD12_10810 PF03099 Biotin/lipoate A/B protein ligase family BJD12_10810 PF02237 Biotin protein ligase C terminal domain BJD12_10835 PF00512 His Kinase A (phospho-acceptor) domain BJD12_10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_10835 PF00672 HAMP domain BJD12_10840 PF00072 Response regulator receiver domain BJD12_10840 PF00486 Transcriptional regulatory protein, C terminal BJD12_10850 PF01207 Dihydrouridine synthase (Dus) BJD12_10870 PF06628 Catalase-related immune-responsive BJD12_10870 PF00199 Catalase BJD12_10880 PF13307 Helicase C-terminal domain BJD12_10880 PF06733 DEAD_2 BJD12_10895 PF01488 Shikimate / quinate 5-dehydrogenase BJD12_10895 PF08501 Shikimate dehydrogenase substrate binding domain BJD12_10895 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BJD12_10905 PF00667 FAD binding domain BJD12_10905 PF00175 Oxidoreductase NAD-binding domain BJD12_10905 PF00258 Flavodoxin BJD12_10915 PF00490 Delta-aminolevulinic acid dehydratase BJD12_10945 PF00326 Prolyl oligopeptidase family BJD12_10945 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD12_10950 PF00043 Glutathione S-transferase, C-terminal domain BJD12_10950 PF02798 Glutathione S-transferase, N-terminal domain BJD12_10970 PF04820 Tryptophan halogenase BJD12_10985 PF00005 ABC transporter BJD12_10995 PF01381 Helix-turn-helix BJD12_11005 PF01229 Glycosyl hydrolases family 39 BJD12_11010 PF02583 Metal-sensitive transcriptional repressor BJD12_11015 PF01545 Cation efflux family BJD12_11020 PF00175 Oxidoreductase NAD-binding domain BJD12_11020 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD12_11020 PF00970 Oxidoreductase FAD-binding domain BJD12_11025 PF00005 ABC transporter BJD12_11030 PF01061 ABC-2 type transporter BJD12_11035 PF02558 Ketopantoate reductase PanE/ApbA BJD12_11035 PF08546 Ketopantoate reductase PanE/ApbA C terminal BJD12_11045 PF03061 Thioesterase superfamily BJD12_11065 PF00268 Ribonucleotide reductase, small chain BJD12_11070 PF02867 Ribonucleotide reductase, barrel domain BJD12_11070 PF00317 Ribonucleotide reductase, all-alpha domain BJD12_11070 PF03477 ATP cone domain BJD12_11085 PF13380 CoA binding domain BJD12_11085 PF13607 Succinyl-CoA ligase like flavodoxin domain BJD12_11085 PF00583 Acetyltransferase (GNAT) family BJD12_11090 PF00571 CBS domain BJD12_11090 PF01769 Divalent cation transporter BJD12_11090 PF03448 MgtE intracellular N domain BJD12_11100 PF02254 TrkA-N domain BJD12_11100 PF00999 Sodium/hydrogen exchanger family BJD12_11105 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BJD12_11105 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BJD12_11110 PF00723 Glycosyl hydrolases family 15 BJD12_11115 PF01451 Low molecular weight phosphotyrosine protein phosphatase BJD12_11125 PF05166 YcgL domain BJD12_11130 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_11130 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_11175 PF07977 FabA-like domain BJD12_11180 PF01553 Acyltransferase BJD12_11190 PF00550 Phosphopantetheine attachment site BJD12_11195 PF04820 Tryptophan halogenase BJD12_11240 PF01218 Coproporphyrinogen III oxidase BJD12_11245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD12_11245 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD12_11245 PF00476 DNA polymerase family A BJD12_11245 PF01612 3'-5' exonuclease BJD12_11275 PF00069 Protein kinase domain BJD12_11275 PF03793 PASTA domain BJD12_11310 PF00248 Aldo/keto reductase family BJD12_11315 PF03466 LysR substrate binding domain BJD12_11315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_11335 PF04717 Type VI secretion system, phage-baseplate injector BJD12_11350 PF03793 PASTA domain BJD12_11350 PF00069 Protein kinase domain BJD12_11365 PF13417 Glutathione S-transferase, N-terminal domain BJD12_11405 PF10431 C-terminal, D2-small domain, of ClpB protein BJD12_11405 PF17871 AAA lid domain BJD12_11405 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_11405 PF07724 AAA domain (Cdc48 subfamily) BJD12_11430 PF05638 Type VI secretion system effector, Hcp BJD12_11455 PF12464 Maltose acetyltransferase BJD12_11455 PF14602 Hexapeptide repeat of succinyl-transferase BJD12_11460 PF13361 UvrD-like helicase C-terminal domain BJD12_11460 PF00580 UvrD/REP helicase N-terminal domain BJD12_11475 PF13091 PLD-like domain BJD12_11475 PF13396 Phospholipase_D-nuclease N-terminal BJD12_11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_11480 PF03466 LysR substrate binding domain BJD12_11485 PF03737 Aldolase/RraA BJD12_11490 PF04303 PrpF protein BJD12_11495 PF04909 Amidohydrolase BJD12_11500 PF00471 Ribosomal protein L33 BJD12_11505 PF00830 Ribosomal L28 family BJD12_11510 PF00873 AcrB/AcrD/AcrF family BJD12_11520 PF00529 HlyD membrane-fusion protein of T1SS BJD12_11520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_11540 PF02527 rRNA small subunit methyltransferase G BJD12_11545 PF09423 PhoD-like phosphatase BJD12_11545 PF16655 PhoD-like phosphatase, N-terminal domain BJD12_11550 PF01648 4'-phosphopantetheinyl transferase superfamily BJD12_11575 PF00474 Sodium:solute symporter family BJD12_11580 PF04341 Protein of unknown function, DUF485 BJD12_11590 PF16177 Acetyl-coenzyme A synthetase N-terminus BJD12_11590 PF13193 AMP-binding enzyme C-terminal domain BJD12_11590 PF00501 AMP-binding enzyme BJD12_11595 PF00196 Bacterial regulatory proteins, luxR family BJD12_11595 PF00072 Response regulator receiver domain BJD12_11620 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD12_11620 PF04616 Glycosyl hydrolases family 43 BJD12_11625 PF00248 Aldo/keto reductase family BJD12_11640 PF01557 Fumarylacetoacetate (FAA) hydrolase family BJD12_11645 PF13378 Enolase C-terminal domain-like BJD12_11645 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD12_11650 PF05336 L-rhamnose mutarotase BJD12_11655 PF07690 Major Facilitator Superfamily BJD12_11660 PF09339 IclR helix-turn-helix domain BJD12_11660 PF01614 Bacterial transcriptional regulator BJD12_11665 PF02659 Putative manganese efflux pump BJD12_11670 PF09456 RcsC Alpha-Beta-Loop (ABL) BJD12_11670 PF00072 Response regulator receiver domain BJD12_11670 PF00512 His Kinase A (phospho-acceptor) domain BJD12_11670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_11685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BJD12_11685 PF06165 Glycosyltransferase family 36 BJD12_11700 PF13360 PQQ-like domain BJD12_11700 PF13570 PQQ-like domain BJD12_11700 PF01011 PQQ enzyme repeat BJD12_11720 PF04357 TamB, inner membrane protein subunit of TAM complex BJD12_11725 PF17243 POTRA domain TamA domain 1 BJD12_11725 PF01103 Surface antigen BJD12_11730 PF07715 TonB-dependent Receptor Plug Domain BJD12_11730 PF00593 TonB dependent receptor BJD12_11735 PF13181 Tetratricopeptide repeat BJD12_11740 PF05746 DALR anticodon binding domain BJD12_11740 PF02092 Glycyl-tRNA synthetase beta subunit BJD12_11745 PF02091 Glycyl-tRNA synthetase alpha subunit BJD12_11750 PF00437 Type II/IV secretion system protein BJD12_11760 PF00958 GMP synthase C terminal domain BJD12_11760 PF00117 Glutamine amidotransferase class-I BJD12_11775 PF00902 Sec-independent protein translocase protein (TatC) BJD12_11780 PF02416 mttA/Hcf106 family BJD12_11785 PF02416 mttA/Hcf106 family BJD12_11795 PF00762 Ferrochelatase BJD12_11800 PF12697 Alpha/beta hydrolase family BJD12_11815 PF04381 Putative exonuclease, RdgC BJD12_11820 PF01171 PP-loop family BJD12_11835 PF00356 Bacterial regulatory proteins, lacI family BJD12_11840 PF03648 Glycosyl hydrolase family 67 N-terminus BJD12_11840 PF07488 Glycosyl hydrolase family 67 middle domain BJD12_11840 PF07477 Glycosyl hydrolase family 67 C-terminus BJD12_11850 PF13378 Enolase C-terminal domain-like BJD12_11850 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD12_11855 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD12_11855 PF04616 Glycosyl hydrolases family 43 BJD12_11860 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_11860 PF14310 Fibronectin type III-like domain BJD12_11860 PF07691 PA14 domain BJD12_11860 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_11865 PF01232 Mannitol dehydrogenase Rossmann domain BJD12_11865 PF08125 Mannitol dehydrogenase C-terminal domain BJD12_11895 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD12_11905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD12_11905 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD12_11905 PF00703 Glycosyl hydrolases family 2 BJD12_11905 PF16355 Domain of unknown function (DUF4982) BJD12_11905 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD12_11910 PF02614 Glucuronate isomerase BJD12_11915 PF03422 Carbohydrate binding module (family 6) BJD12_11915 PF00331 Glycosyl hydrolase family 10 BJD12_11915 PF00553 Cellulose binding domain BJD12_11935 PF04616 Glycosyl hydrolases family 43 BJD12_11965 PF14765 Polyketide synthase dehydratase BJD12_11965 PF00698 Acyl transferase domain BJD12_11965 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_11965 PF16197 Ketoacyl-synthetase C-terminal extension BJD12_11965 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_11965 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_11965 PF08659 KR domain BJD12_11965 PF00550 Phosphopantetheine attachment site BJD12_11970 PF01553 Acyltransferase BJD12_11980 PF00356 Bacterial regulatory proteins, lacI family BJD12_11995 PF04820 Tryptophan halogenase BJD12_12000 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BJD12_12005 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BJD12_12010 PF04337 Protein of unknown function, DUF480 BJD12_12025 PF13361 UvrD-like helicase C-terminal domain BJD12_12025 PF00580 UvrD/REP helicase N-terminal domain BJD12_12030 PF00265 Thymidine kinase BJD12_12035 PF01590 GAF domain BJD12_12035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_12035 PF00512 His Kinase A (phospho-acceptor) domain BJD12_12035 PF08446 PAS fold BJD12_12035 PF00360 Phytochrome region BJD12_12040 PF04349 Periplasmic glucan biosynthesis protein, MdoG BJD12_12050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD12_12050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD12_12050 PF06827 Zinc finger found in FPG and IleRS BJD12_12080 PF03594 Benzoate membrane transport protein BJD12_12085 PF01590 GAF domain BJD12_12085 PF08446 PAS fold BJD12_12085 PF13426 PAS domain BJD12_12085 PF00360 Phytochrome region BJD12_12090 PF01126 Heme oxygenase BJD12_12095 PF07690 Major Facilitator Superfamily BJD12_12100 PF01263 Aldose 1-epimerase BJD12_12110 PF02810 SEC-C motif BJD12_12115 PF01925 Sulfite exporter TauE/SafE BJD12_12135 PF01227 GTP cyclohydrolase I BJD12_12145 PF07869 Protein of unknown function (DUF1656) BJD12_12150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_12150 PF00529 HlyD membrane-fusion protein of T1SS BJD12_12155 PF02321 Outer membrane efflux protein BJD12_12160 PF04632 Fusaric acid resistance protein family BJD12_12165 PF00083 Sugar (and other) transporter BJD12_12175 PF13396 Phospholipase_D-nuclease N-terminal BJD12_12175 PF13091 PLD-like domain BJD12_12235 PF00849 RNA pseudouridylate synthase BJD12_12275 PF09386 Antitoxin ParD BJD12_12285 PF13538 UvrD-like helicase C-terminal domain BJD12_12290 PF12705 PD-(D/E)XK nuclease superfamily BJD12_12290 PF00580 UvrD/REP helicase N-terminal domain BJD12_12290 PF13361 UvrD-like helicase C-terminal domain BJD12_12295 PF17946 RecC C-terminal domain BJD12_12335 PF00005 ABC transporter BJD12_12340 PF02405 Permease MlaE BJD12_12345 PF02470 MlaD protein BJD12_12350 PF05494 MlaC protein BJD12_12360 PF04333 MlaA lipoprotein BJD12_12370 PF00255 Glutathione peroxidase BJD12_12380 PF02646 RmuC family BJD12_12385 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_12385 PF00107 Zinc-binding dehydrogenase BJD12_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_12390 PF03466 LysR substrate binding domain BJD12_12400 PF13417 Glutathione S-transferase, N-terminal domain BJD12_12400 PF00043 Glutathione S-transferase, C-terminal domain BJD12_12410 PF13520 Amino acid permease BJD12_12415 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD12_12415 PF07971 Glycosyl hydrolase family 92 BJD12_12420 PF07715 TonB-dependent Receptor Plug Domain BJD12_12420 PF00593 TonB dependent receptor BJD12_12425 PF10947 Protein of unknown function (DUF2628) BJD12_12430 PF08448 PAS fold BJD12_12430 PF00990 Diguanylate cyclase, GGDEF domain BJD12_12435 PF02595 Glycerate kinase family BJD12_12455 PF17785 PUA-like domain BJD12_12455 PF10672 S-adenosylmethionine-dependent methyltransferase BJD12_12465 PF03741 Integral membrane protein TerC family BJD12_12475 PF01694 Rhomboid family BJD12_12480 PF03009 Glycerophosphoryl diester phosphodiesterase family BJD12_12490 PF01569 PAP2 superfamily BJD12_12495 PF10396 GTP-binding protein TrmE N-terminus BJD12_12495 PF12631 MnmE helical domain BJD12_12495 PF01926 50S ribosome-binding GTPase BJD12_12505 PF01522 Polysaccharide deacetylase BJD12_12510 PF02096 60Kd inner membrane protein BJD12_12510 PF14849 YidC periplasmic domain BJD12_12515 PF00825 Ribonuclease P BJD12_12520 PF00468 Ribosomal protein L34 BJD12_12530 PF08299 Bacterial dnaA protein helix-turn-helix BJD12_12530 PF00308 Bacterial dnaA protein BJD12_12530 PF11638 DnaA N-terminal domain BJD12_12535 PF00712 DNA polymerase III beta subunit, N-terminal domain BJD12_12535 PF02768 DNA polymerase III beta subunit, C-terminal domain BJD12_12535 PF02767 DNA polymerase III beta subunit, central domain BJD12_12540 PF02463 RecF/RecN/SMC N terminal domain BJD12_12545 PF01751 Toprim domain BJD12_12545 PF00986 DNA gyrase B subunit, carboxyl terminus BJD12_12545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_12545 PF18053 DNA gyrase B subunit insert domain BJD12_12545 PF00204 DNA gyrase B BJD12_12555 PF01435 Peptidase family M48 BJD12_12565 PF03544 Gram-negative bacterial TonB protein C-terminal BJD12_12570 PF01618 MotA/TolQ/ExbB proton channel family BJD12_12575 PF02472 Biopolymer transport protein ExbD/TolR BJD12_12580 PF02472 Biopolymer transport protein ExbD/TolR BJD12_12590 PF02472 Biopolymer transport protein ExbD/TolR BJD12_12600 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BJD12_12610 PF13396 Phospholipase_D-nuclease N-terminal BJD12_12610 PF13091 PLD-like domain BJD12_12630 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BJD12_12645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BJD12_12645 PF01842 ACT domain BJD12_12645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BJD12_12650 PF03572 Peptidase family S41 BJD12_12650 PF13180 PDZ domain BJD12_12660 PF01551 Peptidase family M23 BJD12_12670 PF04389 Peptidase family M28 BJD12_12680 PF00150 Cellulase (glycosyl hydrolase family 5) BJD12_12685 PF00150 Cellulase (glycosyl hydrolase family 5) BJD12_12690 PF00150 Cellulase (glycosyl hydrolase family 5) BJD12_12695 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_12695 PF00107 Zinc-binding dehydrogenase BJD12_12700 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_12700 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BJD12_12705 PF00310 Glutamine amidotransferases class-II BJD12_12705 PF04898 Glutamate synthase central domain BJD12_12705 PF01645 Conserved region in glutamate synthase BJD12_12705 PF01493 GXGXG motif BJD12_12730 PF01804 Penicillin amidase BJD12_12740 PF03466 LysR substrate binding domain BJD12_12740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_12750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_12750 PF03466 LysR substrate binding domain BJD12_12825 PF00270 DEAD/DEAH box helicase BJD12_12825 PF09369 Domain of unknown function (DUF1998) BJD12_12825 PF00271 Helicase conserved C-terminal domain BJD12_12830 PF03006 Haemolysin-III related BJD12_12840 PF00043 Glutathione S-transferase, C-terminal domain BJD12_12840 PF02798 Glutathione S-transferase, N-terminal domain BJD12_12850 PF05649 Peptidase family M13 BJD12_12850 PF01431 Peptidase family M13 BJD12_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_12855 PF03466 LysR substrate binding domain BJD12_12880 PF02525 Flavodoxin-like fold BJD12_12890 PF01638 HxlR-like helix-turn-helix BJD12_12925 PF05532 CsbD-like BJD12_12930 PF13188 PAS domain BJD12_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_12930 PF00072 Response regulator receiver domain BJD12_12930 PF00512 His Kinase A (phospho-acceptor) domain BJD12_12930 PF08448 PAS fold BJD12_12970 PF00440 Bacterial regulatory proteins, tetR family BJD12_12975 PF07690 Major Facilitator Superfamily BJD12_12980 PF13344 Haloacid dehalogenase-like hydrolase BJD12_12980 PF00293 NUDIX domain BJD12_12990 PF01594 AI-2E family transporter BJD12_12995 PF07859 alpha/beta hydrolase fold BJD12_13005 PF00085 Thioredoxin BJD12_13010 PF08946 Osmosensory transporter coiled coil BJD12_13010 PF00083 Sugar (and other) transporter BJD12_13055 PF07726 ATPase family associated with various cellular activities (AAA) BJD12_13055 PF17863 AAA lid domain BJD12_13090 PF06441 Epoxide hydrolase N terminus BJD12_13100 PF00440 Bacterial regulatory proteins, tetR family BJD12_13100 PF18665 Tetracyclin repressor-like, C-terminal domain BJD12_13105 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BJD12_13110 PF00155 Aminotransferase class I and II BJD12_13115 PF00593 TonB dependent receptor BJD12_13115 PF07715 TonB-dependent Receptor Plug Domain BJD12_13135 PF00171 Aldehyde dehydrogenase family BJD12_13140 PF00107 Zinc-binding dehydrogenase BJD12_13140 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_13155 PF02735 Ku70/Ku80 beta-barrel domain BJD12_13160 PF13298 DNA polymerase Ligase (LigD) BJD12_13160 PF04679 ATP dependent DNA ligase C terminal region BJD12_13160 PF01068 ATP dependent DNA ligase domain BJD12_13165 PF01070 FMN-dependent dehydrogenase BJD12_13180 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BJD12_13185 PF07730 Histidine kinase BJD12_13190 PF00196 Bacterial regulatory proteins, luxR family BJD12_13190 PF00072 Response regulator receiver domain BJD12_13200 PF00486 Transcriptional regulatory protein, C terminal BJD12_13200 PF18500 CadC C-terminal domain 1 BJD12_13205 PF12241 Trans-2-enoyl-CoA reductase catalytic region BJD12_13205 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BJD12_13205 PF07055 Enoyl reductase FAD binding domain BJD12_13215 PF00294 pfkB family carbohydrate kinase BJD12_13230 PF01095 Pectinesterase BJD12_13265 PF01527 Transposase BJD12_13315 PF00128 Alpha amylase, catalytic domain BJD12_13315 PF11896 Domain of unknown function (DUF3416) BJD12_13320 PF16657 Maltogenic Amylase, C-terminal domain BJD12_13320 PF00128 Alpha amylase, catalytic domain BJD12_13325 PF00128 Alpha amylase, catalytic domain BJD12_13325 PF02806 Alpha amylase, C-terminal all-beta domain BJD12_13325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD12_13355 PF00248 Aldo/keto reductase family BJD12_13360 PF13472 GDSL-like Lipase/Acylhydrolase family BJD12_13365 PF00135 Carboxylesterase family BJD12_13370 PF07859 alpha/beta hydrolase fold BJD12_13370 PF13472 GDSL-like Lipase/Acylhydrolase family BJD12_13380 PF03480 Bacterial extracellular solute-binding protein, family 7 BJD12_13390 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BJD12_13395 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD12_13395 PF04616 Glycosyl hydrolases family 43 BJD12_13400 PF00356 Bacterial regulatory proteins, lacI family BJD12_13410 PF04962 KduI/IolB family BJD12_13425 PF00657 GDSL-like Lipase/Acylhydrolase BJD12_13435 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BJD12_13440 PF01037 Lrp/AsnC ligand binding domain BJD12_13450 PF07660 Secretin and TonB N terminus short domain BJD12_13450 PF07715 TonB-dependent Receptor Plug Domain BJD12_13450 PF00593 TonB dependent receptor BJD12_13455 PF01734 Patatin-like phospholipase BJD12_13465 PF00005 ABC transporter BJD12_13480 PF00571 CBS domain BJD12_13480 PF00005 ABC transporter BJD12_13485 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_13495 PF12867 DinB superfamily BJD12_13495 PF03781 Sulfatase-modifying factor enzyme 1 BJD12_13500 PF10017 Histidine-specific methyltransferase, SAM-dependent BJD12_13525 PF01883 Iron-sulfur cluster assembly protein BJD12_13525 PF10609 NUBPL iron-transfer P-loop NTPase BJD12_13535 PF04264 YceI-like domain BJD12_13540 PF13091 PLD-like domain BJD12_13550 PF03061 Thioesterase superfamily BJD12_13570 PF01161 Phosphatidylethanolamine-binding protein BJD12_13580 PF02673 Bacitracin resistance protein BacA BJD12_13590 PF00120 Glutamine synthetase, catalytic domain BJD12_13590 PF03951 Glutamine synthetase, beta-Grasp domain BJD12_13595 PF00543 Nitrogen regulatory protein P-II BJD12_13600 PF00909 Ammonium Transporter Family BJD12_13605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_13605 PF00512 His Kinase A (phospho-acceptor) domain BJD12_13605 PF00989 PAS fold BJD12_13610 PF00158 Sigma-54 interaction domain BJD12_13610 PF00072 Response regulator receiver domain BJD12_13610 PF02954 Bacterial regulatory protein, Fis family BJD12_13615 PF00080 Copper/zinc superoxide dismutase (SODC) BJD12_13620 PF00080 Copper/zinc superoxide dismutase (SODC) BJD12_13635 PF00108 Thiolase, N-terminal domain BJD12_13635 PF02803 Thiolase, C-terminal domain BJD12_13675 PF00581 Rhodanese-like domain BJD12_13680 PF02556 Preprotein translocase subunit SecB BJD12_13685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BJD12_13685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BJD12_13695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BJD12_13695 PF00205 Thiamine pyrophosphate enzyme, central domain BJD12_13695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BJD12_13700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_13705 PF00072 Response regulator receiver domain BJD12_13705 PF02954 Bacterial regulatory protein, Fis family BJD12_13705 PF00158 Sigma-54 interaction domain BJD12_13720 PF07690 Major Facilitator Superfamily BJD12_13725 PF00588 SpoU rRNA Methylase family BJD12_13740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD12_13740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD12_13745 PF02661 Fic/DOC family BJD12_13745 PF13784 Fic/DOC family N-terminal BJD12_13750 PF00561 alpha/beta hydrolase fold BJD12_13755 PF03692 Putative zinc- or iron-chelating domain BJD12_13760 PF00501 AMP-binding enzyme BJD12_13765 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BJD12_13780 PF07478 D-ala D-ala ligase C-terminus BJD12_13780 PF01820 D-ala D-ala ligase N-terminus BJD12_13790 PF03109 ABC1 family BJD12_13800 PF00849 RNA pseudouridylate synthase BJD12_13810 PF00472 RF-1 domain BJD12_13830 PF01432 Peptidase family M3 BJD12_13835 PF01432 Peptidase family M3 BJD12_13845 PF12706 Beta-lactamase superfamily domain BJD12_13860 PF12833 Helix-turn-helix domain BJD12_13865 PF00999 Sodium/hydrogen exchanger family BJD12_13875 PF01274 Malate synthase BJD12_13880 PF00463 Isocitrate lyase family BJD12_13885 PF00990 Diguanylate cyclase, GGDEF domain BJD12_13885 PF17151 Periplasmic sensor domain BJD12_13905 PF00326 Prolyl oligopeptidase family BJD12_13910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD12_13910 PF00364 Biotin-requiring enzyme BJD12_13910 PF00289 Biotin carboxylase, N-terminal domain BJD12_13910 PF02785 Biotin carboxylase C-terminal domain BJD12_13915 PF01039 Carboxyl transferase domain BJD12_13920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_13920 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_13920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_13980 PF02492 CobW/HypB/UreG, nucleotide-binding domain BJD12_13980 PF07683 Cobalamin synthesis protein cobW C-terminal domain BJD12_14005 PF03969 AFG1-like ATPase BJD12_14010 PF01047 MarR family BJD12_14015 PF02566 OsmC-like protein BJD12_14020 PF07859 alpha/beta hydrolase fold BJD12_14025 PF00561 alpha/beta hydrolase fold BJD12_14045 PF00248 Aldo/keto reductase family BJD12_14050 PF00107 Zinc-binding dehydrogenase BJD12_14050 PF16884 N-terminal domain of oxidoreductase BJD12_14065 PF00849 RNA pseudouridylate synthase BJD12_14080 PF00270 DEAD/DEAH box helicase BJD12_14080 PF04408 Helicase associated domain (HA2) BJD12_14080 PF00271 Helicase conserved C-terminal domain BJD12_14080 PF08482 ATP-dependent helicase C-terminal BJD12_14085 PF02203 Tar ligand binding domain homologue BJD12_14085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_14085 PF00672 HAMP domain BJD12_14090 PF07308 Protein of unknown function (DUF1456) BJD12_14095 PF00576 HIUase/Transthyretin family BJD12_14100 PF13454 FAD-NAD(P)-binding BJD12_14120 PF00266 Aminotransferase class-V BJD12_14125 PF07687 Peptidase dimerisation domain BJD12_14125 PF01546 Peptidase family M20/M25/M40 BJD12_14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_14130 PF03466 LysR substrate binding domain BJD12_14135 PF07690 Major Facilitator Superfamily BJD12_14155 PF01425 Amidase BJD12_14160 PF01156 Inosine-uridine preferring nucleoside hydrolase BJD12_14170 PF00860 Permease family BJD12_14175 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD12_14180 PF00355 Rieske [2Fe-2S] domain BJD12_14185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_14185 PF03466 LysR substrate binding domain BJD12_14190 PF01026 TatD related DNase BJD12_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_14205 PF03466 LysR substrate binding domain BJD12_14210 PF07690 Major Facilitator Superfamily BJD12_14225 PF00106 short chain dehydrogenase BJD12_14235 PF02146 Sir2 family BJD12_14240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD12_14245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD12_14245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD12_14255 PF00551 Formyl transferase BJD12_14260 PF12833 Helix-turn-helix domain BJD12_14260 PF12852 Cupin BJD12_14265 PF00106 short chain dehydrogenase BJD12_14280 PF03466 LysR substrate binding domain BJD12_14280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_14285 PF03358 NADPH-dependent FMN reductase BJD12_14295 PF08267 Cobalamin-independent synthase, N-terminal domain BJD12_14295 PF01717 Cobalamin-independent synthase, Catalytic domain BJD12_14300 PF03812 2-keto-3-deoxygluconate permease BJD12_14315 PF00106 short chain dehydrogenase BJD12_14320 PF00107 Zinc-binding dehydrogenase BJD12_14320 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_14325 PF00550 Phosphopantetheine attachment site BJD12_14325 PF16197 Ketoacyl-synthetase C-terminal extension BJD12_14325 PF08659 KR domain BJD12_14325 PF00698 Acyl transferase domain BJD12_14325 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_14325 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_14325 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_14325 PF14765 Polyketide synthase dehydratase BJD12_14340 PF05368 NmrA-like family BJD12_14345 PF01638 HxlR-like helix-turn-helix BJD12_14450 PF13495 Phage integrase, N-terminal SAM-like domain BJD12_14450 PF00589 Phage integrase family BJD12_14455 PF00920 Dehydratase family BJD12_14460 PF03692 Putative zinc- or iron-chelating domain BJD12_14465 PF00132 Bacterial transferase hexapeptide (six repeats) BJD12_14470 PF07690 Major Facilitator Superfamily BJD12_14475 PF01966 HD domain BJD12_14475 PF11871 Domain of unknown function (DUF3391) BJD12_14500 PF00171 Aldehyde dehydrogenase family BJD12_14505 PF12833 Helix-turn-helix domain BJD12_14510 PF01494 FAD binding domain BJD12_14520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD12_14520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD12_14525 PF00230 Major intrinsic protein BJD12_14530 PF01266 FAD dependent oxidoreductase BJD12_14530 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BJD12_14535 PF08220 DeoR-like helix-turn-helix domain BJD12_14535 PF00455 DeoR C terminal sensor domain BJD12_14550 PF00355 Rieske [2Fe-2S] domain BJD12_14555 PF01144 Coenzyme A transferase BJD12_14560 PF01144 Coenzyme A transferase BJD12_14565 PF02803 Thiolase, C-terminal domain BJD12_14565 PF00108 Thiolase, N-terminal domain BJD12_14570 PF00775 Dioxygenase BJD12_14570 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BJD12_14575 PF00775 Dioxygenase BJD12_14575 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BJD12_14580 PF00206 Lyase BJD12_14580 PF10397 Adenylosuccinate lyase C-terminus BJD12_14585 PF12146 Serine aminopeptidase, S33 BJD12_14590 PF02627 Carboxymuconolactone decarboxylase family BJD12_14600 PF01614 Bacterial transcriptional regulator BJD12_14600 PF09339 IclR helix-turn-helix domain BJD12_14610 PF07859 alpha/beta hydrolase fold BJD12_14615 PF10677 Protein of unknown function (DUF2490) BJD12_14620 PF13932 GidA associated domain BJD12_14620 PF01134 Glucose inhibited division protein A BJD12_14630 PF13291 ACT domain BJD12_14630 PF00291 Pyridoxal-phosphate dependent enzyme BJD12_14650 PF13649 Methyltransferase domain BJD12_14660 PF12697 Alpha/beta hydrolase family BJD12_14670 PF00155 Aminotransferase class I and II BJD12_14675 PF04055 Radical SAM superfamily BJD12_14675 PF06968 Biotin and Thiamin Synthesis associated domain BJD12_14685 PF01040 UbiA prenyltransferase family BJD12_14705 PF00672 HAMP domain BJD12_14705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_14705 PF02203 Tar ligand binding domain homologue BJD12_14720 PF12794 Mechanosensitive ion channel inner membrane domain 1 BJD12_14720 PF00924 Mechanosensitive ion channel BJD12_14720 PF12795 Mechanosensitive ion channel porin domain BJD12_14725 PF00884 Sulfatase BJD12_14735 PF03109 ABC1 family BJD12_14740 PF05661 Protein of unknown function (DUF808) BJD12_14745 PF00072 Response regulator receiver domain BJD12_14745 PF00990 Diguanylate cyclase, GGDEF domain BJD12_14750 PF08323 Starch synthase catalytic domain BJD12_14750 PF00534 Glycosyl transferases group 1 BJD12_14755 PF00128 Alpha amylase, catalytic domain BJD12_14755 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD12_14755 PF02806 Alpha amylase, C-terminal all-beta domain BJD12_14760 PF11941 Domain of unknown function (DUF3459) BJD12_14760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD12_14760 PF00128 Alpha amylase, catalytic domain BJD12_14765 PF02446 4-alpha-glucanotransferase BJD12_14770 PF00128 Alpha amylase, catalytic domain BJD12_14780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BJD12_14780 PF00128 Alpha amylase, catalytic domain BJD12_14785 PF13460 NAD(P)H-binding BJD12_14805 PF06903 VirK protein BJD12_14810 PF02321 Outer membrane efflux protein BJD12_14815 PF00440 Bacterial regulatory proteins, tetR family BJD12_14825 PF00873 AcrB/AcrD/AcrF family BJD12_14835 PF00106 short chain dehydrogenase BJD12_14840 PF01638 HxlR-like helix-turn-helix BJD12_14850 PF00271 Helicase conserved C-terminal domain BJD12_14850 PF00270 DEAD/DEAH box helicase BJD12_14865 PF02817 e3 binding domain BJD12_14865 PF00364 Biotin-requiring enzyme BJD12_14865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD12_14875 PF02779 Transketolase, pyrimidine binding domain BJD12_14875 PF02780 Transketolase, C-terminal domain BJD12_14880 PF00676 Dehydrogenase E1 component BJD12_14890 PF03301 Tryptophan 2,3-dioxygenase BJD12_14895 PF00854 POT family BJD12_14905 PF01047 MarR family BJD12_14910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD12_14915 PF04480 Protein of unknown function (DUF559) BJD12_14935 PF03334 Na+/H+ antiporter subunit BJD12_14940 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BJD12_14950 PF00361 Proton-conducting membrane transporter BJD12_14955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BJD12_14960 PF00361 Proton-conducting membrane transporter BJD12_14960 PF13244 Domain of unknown function (DUF4040) BJD12_14960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BJD12_14960 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BJD12_14975 PF07504 Fungalysin/Thermolysin Propeptide Motif BJD12_14975 PF01483 Proprotein convertase P-domain BJD12_14975 PF01447 Thermolysin metallopeptidase, catalytic domain BJD12_14975 PF02868 Thermolysin metallopeptidase, alpha-helical domain BJD12_14990 PF01259 SAICAR synthetase BJD12_14995 PF00684 DnaJ central domain BJD12_14995 PF01556 DnaJ C terminal domain BJD12_14995 PF00226 DnaJ domain BJD12_15010 PF00834 Ribulose-phosphate 3 epimerase family BJD12_15015 PF00583 Acetyltransferase (GNAT) family BJD12_15020 PF00781 Diacylglycerol kinase catalytic domain BJD12_15025 PF04715 Anthranilate synthase component I, N terminal region BJD12_15025 PF00425 chorismate binding enzyme BJD12_15040 PF00117 Glutamine amidotransferase class-I BJD12_15050 PF00591 Glycosyl transferase family, a/b domain BJD12_15050 PF02885 Glycosyl transferase family, helical bundle domain BJD12_15055 PF00218 Indole-3-glycerol phosphate synthase BJD12_15065 PF00027 Cyclic nucleotide-binding domain BJD12_15065 PF00325 Bacterial regulatory proteins, crp family BJD12_15070 PF02675 S-adenosylmethionine decarboxylase BJD12_15075 PF00893 Small Multidrug Resistance protein BJD12_15080 PF03232 Ubiquinone biosynthesis protein COQ7 BJD12_15085 PF00572 Ribosomal protein L13 BJD12_15090 PF00380 Ribosomal protein S9/S16 BJD12_15105 PF00293 NUDIX domain BJD12_15115 PF00210 Ferritin-like domain BJD12_15120 PF00672 HAMP domain BJD12_15120 PF01627 Hpt domain BJD12_15120 PF00512 His Kinase A (phospho-acceptor) domain BJD12_15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_15120 PF00072 Response regulator receiver domain BJD12_15120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD12_15125 PF00072 Response regulator receiver domain BJD12_15125 PF00486 Transcriptional regulatory protein, C terminal BJD12_15145 PF01521 Iron-sulphur cluster biosynthesis BJD12_15150 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BJD12_15150 PF09297 NADH pyrophosphatase zinc ribbon domain BJD12_15150 PF00293 NUDIX domain BJD12_15155 PF17113 Regulatory signalling modulator protein AmpE BJD12_15155 PF03186 CobD/Cbib protein BJD12_15180 PF07690 Major Facilitator Superfamily BJD12_15185 PF12805 FUSC-like inner membrane protein yccS BJD12_15190 PF02844 Phosphoribosylglycinamide synthetase, N domain BJD12_15190 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BJD12_15190 PF02843 Phosphoribosylglycinamide synthetase, C domain BJD12_15200 PF01808 AICARFT/IMPCHase bienzyme BJD12_15200 PF02142 MGS-like domain BJD12_15205 PF01066 CDP-alcohol phosphatidyltransferase BJD12_15210 PF12146 Serine aminopeptidase, S33 BJD12_15210 PF12147 Putative methyltransferase BJD12_15215 PF00782 Dual specificity phosphatase, catalytic domain BJD12_15245 PF00818 Ice nucleation protein repeat BJD12_15245 PF00818 Ice nucleation protein repeat BJD12_15250 PF02954 Bacterial regulatory protein, Fis family BJD12_15260 PF01381 Helix-turn-helix BJD12_15285 PF02785 Biotin carboxylase C-terminal domain BJD12_15285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BJD12_15285 PF00289 Biotin carboxylase, N-terminal domain BJD12_15295 PF00364 Biotin-requiring enzyme BJD12_15300 PF01220 Dehydroquinase class II BJD12_15305 PF11412 Disulphide bond corrector protein DsbC BJD12_15305 PF02683 Cytochrome C biogenesis protein transmembrane region BJD12_15310 PF03091 CutA1 divalent ion tolerance protein BJD12_15315 PF04231 Endonuclease I BJD12_15320 PF00166 Chaperonin 10 Kd subunit BJD12_15325 PF00118 TCP-1/cpn60 chaperonin family BJD12_15340 PF00593 TonB dependent receptor BJD12_15340 PF07715 TonB-dependent Receptor Plug Domain BJD12_15345 PF00793 DAHP synthetase I family BJD12_15350 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BJD12_15350 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BJD12_15365 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD12_15375 PF08335 GlnD PII-uridylyltransferase BJD12_15375 PF03710 Glutamate-ammonia ligase adenylyltransferase BJD12_15390 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BJD12_15420 PF00881 Nitroreductase family BJD12_15425 PF04264 YceI-like domain BJD12_15440 PF16957 Malonate decarboxylase, alpha subunit, transporter BJD12_15445 PF06857 Malonate decarboxylase delta subunit (MdcD) BJD12_15450 PF01039 Carboxyl transferase domain BJD12_15460 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BJD12_15465 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BJD12_15470 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_15470 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_15470 PF08659 KR domain BJD12_15470 PF16197 Ketoacyl-synthetase C-terminal extension BJD12_15470 PF00550 Phosphopantetheine attachment site BJD12_15470 PF00698 Acyl transferase domain BJD12_15480 PF00392 Bacterial regulatory proteins, gntR family BJD12_15480 PF07729 FCD domain BJD12_15520 PF07745 Glycosyl hydrolase family 53 BJD12_15525 PF00456 Transketolase, thiamine diphosphate binding domain BJD12_15525 PF17831 Pyruvate dehydrogenase E1 component middle domain BJD12_15530 PF00145 C-5 cytosine-specific DNA methylase BJD12_15535 PF00145 C-5 cytosine-specific DNA methylase BJD12_15555 PF01527 Transposase BJD12_15570 PF13276 HTH-like domain BJD12_15570 PF00665 Integrase core domain BJD12_15570 PF13333 Integrase core domain BJD12_15575 PF01527 Transposase BJD12_15595 PF01527 Transposase BJD12_15600 PF00665 Integrase core domain BJD12_15600 PF13276 HTH-like domain BJD12_15600 PF13333 Integrase core domain BJD12_15675 PF13409 Glutathione S-transferase, N-terminal domain BJD12_15705 PF01433 Peptidase family M1 domain BJD12_15705 PF11838 ERAP1-like C-terminal domain BJD12_15720 PF03176 MMPL family BJD12_15720 PF12823 Domain of unknown function (DUF3817) BJD12_15735 PF07759 Protein of unknown function (DUF1615) BJD12_15745 PF00990 Diguanylate cyclase, GGDEF domain BJD12_15745 PF05230 MASE2 domain BJD12_15750 PF02082 Transcriptional regulator BJD12_15755 PF13192 Thioredoxin domain BJD12_15755 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_15780 PF00892 EamA-like transporter family BJD12_15795 PF00324 Amino acid permease BJD12_15800 PF01544 CorA-like Mg2+ transporter protein BJD12_15820 PF01204 Trehalase BJD12_15830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD12_15830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BJD12_15860 PF03707 Bacterial signalling protein N terminal repeat BJD12_15860 PF00563 EAL domain BJD12_15860 PF00990 Diguanylate cyclase, GGDEF domain BJD12_15865 PF02203 Tar ligand binding domain homologue BJD12_15865 PF00672 HAMP domain BJD12_15865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_15870 PF00150 Cellulase (glycosyl hydrolase family 5) BJD12_15870 PF00553 Cellulose binding domain BJD12_15875 PF00916 Sulfate permease family BJD12_15875 PF01740 STAS domain BJD12_15880 PF08448 PAS fold BJD12_15880 PF00990 Diguanylate cyclase, GGDEF domain BJD12_15920 PF13632 Glycosyl transferase family group 2 BJD12_15930 PF06580 Histidine kinase BJD12_15930 PF07694 5TMR of 5TMR-LYT BJD12_15935 PF04397 LytTr DNA-binding domain BJD12_15935 PF00072 Response regulator receiver domain BJD12_15940 PF03900 Porphobilinogen deaminase, C-terminal domain BJD12_15940 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BJD12_15970 PF00326 Prolyl oligopeptidase family BJD12_15970 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD12_15985 PF00155 Aminotransferase class I and II BJD12_15995 PF00326 Prolyl oligopeptidase family BJD12_15995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BJD12_16000 PF04304 Protein of unknown function (DUF454) BJD12_16010 PF01678 Diaminopimelate epimerase BJD12_16020 PF02899 Phage integrase, N-terminal SAM-like domain BJD12_16020 PF00589 Phage integrase family BJD12_16030 PF00227 Proteasome subunit BJD12_16035 PF10431 C-terminal, D2-small domain, of ClpB protein BJD12_16035 PF07724 AAA domain (Cdc48 subfamily) BJD12_16035 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_16050 PF13673 Acetyltransferase (GNAT) domain BJD12_16055 PF13533 Biotin-lipoyl like BJD12_16065 PF01209 ubiE/COQ5 methyltransferase family BJD12_16070 PF00990 Diguanylate cyclase, GGDEF domain BJD12_16070 PF03707 Bacterial signalling protein N terminal repeat BJD12_16070 PF00563 EAL domain BJD12_16075 PF01433 Peptidase family M1 domain BJD12_16075 PF11838 ERAP1-like C-terminal domain BJD12_16090 PF13360 PQQ-like domain BJD12_16095 PF00497 Bacterial extracellular solute-binding proteins, family 3 BJD12_16110 PF00107 Zinc-binding dehydrogenase BJD12_16110 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_16120 PF00158 Sigma-54 interaction domain BJD12_16120 PF01590 GAF domain BJD12_16120 PF02954 Bacterial regulatory protein, Fis family BJD12_16125 PF00294 pfkB family carbohydrate kinase BJD12_16135 PF04085 rod shape-determining protein MreC BJD12_16145 PF00905 Penicillin binding protein transpeptidase domain BJD12_16145 PF03717 Penicillin-binding Protein dimerisation domain BJD12_16150 PF01098 Cell cycle protein BJD12_16155 PF00295 Glycosyl hydrolases family 28 BJD12_16160 PF13406 Transglycosylase SLT domain BJD12_16165 PF05036 Sporulation related domain BJD12_16165 PF03330 Lytic transglycolase BJD12_16170 PF07943 Penicillin-binding protein 5, C-terminal domain BJD12_16170 PF00768 D-alanyl-D-alanine carboxypeptidase BJD12_16180 PF04359 Protein of unknown function (DUF493) BJD12_16185 PF03099 Biotin/lipoate A/B protein ligase family BJD12_16190 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BJD12_16190 PF04055 Radical SAM superfamily BJD12_16195 PF11818 C-terminal domain of tail specific protease (DUF3340) BJD12_16195 PF00595 PDZ domain BJD12_16195 PF03572 Peptidase family S41 BJD12_16195 PF17804 Tail specific protease N-terminal domain BJD12_16205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_16205 PF03466 LysR substrate binding domain BJD12_16215 PF01467 Cytidylyltransferase-like BJD12_16215 PF00293 NUDIX domain BJD12_16250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD12_16250 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BJD12_16255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD12_16255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD12_16260 PF04972 BON domain BJD12_16265 PF00512 His Kinase A (phospho-acceptor) domain BJD12_16265 PF01590 GAF domain BJD12_16265 PF08446 PAS fold BJD12_16265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_16265 PF00360 Phytochrome region BJD12_16270 PF00072 Response regulator receiver domain BJD12_16275 PF00512 His Kinase A (phospho-acceptor) domain BJD12_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_16280 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD12_16325 PF00263 Bacterial type II and III secretion system protein BJD12_16325 PF03958 Bacterial type II/III secretion system short domain BJD12_16330 PF00437 Type II/IV secretion system protein BJD12_16335 PF00482 Type II secretion system (T2SS), protein F BJD12_16340 PF07963 Prokaryotic N-terminal methylation motif BJD12_16340 PF08334 Type II secretion system (T2SS), protein G BJD12_16345 PF12019 Type II transport protein GspH BJD12_16345 PF07963 Prokaryotic N-terminal methylation motif BJD12_16350 PF07963 Prokaryotic N-terminal methylation motif BJD12_16350 PF02501 Type II secretion system (T2SS), protein I BJD12_16355 PF11612 Type II secretion system (T2SS), protein J BJD12_16355 PF07963 Prokaryotic N-terminal methylation motif BJD12_16360 PF03934 Type II secretion system (T2SS), protein K BJD12_16385 PF07690 Major Facilitator Superfamily BJD12_16390 PF00356 Bacterial regulatory proteins, lacI family BJD12_16395 PF01380 SIS domain BJD12_16400 PF01979 Amidohydrolase family BJD12_16415 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD12_16415 PF01743 Poly A polymerase head domain BJD12_16415 PF01966 HD domain BJD12_16430 PF08264 Anticodon-binding domain of tRNA BJD12_16430 PF00133 tRNA synthetases class I (I, L, M and V) BJD12_16430 PF10458 Valyl tRNA synthetase tRNA binding arm BJD12_16445 PF02789 Cytosol aminopeptidase family, N-terminal domain BJD12_16445 PF00883 Cytosol aminopeptidase family, catalytic domain BJD12_16455 PF03739 Lipopolysaccharide export system permease LptF/LptG BJD12_16470 PF00589 Phage integrase family BJD12_16470 PF02899 Phage integrase, N-terminal SAM-like domain BJD12_16475 PF10411 Disulfide bond isomerase protein N-terminus BJD12_16475 PF13098 Thioredoxin-like domain BJD12_16485 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BJD12_16485 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BJD12_16485 PF02769 AIR synthase related protein, C-terminal domain BJD12_16495 PF05662 Coiled stalk of trimeric autotransporter adhesin BJD12_16495 PF03895 YadA-like membrane anchor domain BJD12_16495 PF13018 Extended Signal Peptide of Type V secretion system BJD12_16495 PF05658 Head domain of trimeric autotransporter adhesin BJD12_16500 PF00082 Subtilase family BJD12_16500 PF04151 Bacterial pre-peptidase C-terminal domain BJD12_16505 PF00082 Subtilase family BJD12_16505 PF04151 Bacterial pre-peptidase C-terminal domain BJD12_16510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BJD12_16510 PF00437 Type II/IV secretion system protein BJD12_16515 PF00482 Type II secretion system (T2SS), protein F BJD12_16520 PF08334 Type II secretion system (T2SS), protein G BJD12_16525 PF12019 Type II transport protein GspH BJD12_16530 PF07963 Prokaryotic N-terminal methylation motif BJD12_16540 PF03934 Type II secretion system (T2SS), protein K BJD12_16545 PF05137 Fimbrial assembly protein (PilN) BJD12_16550 PF10741 Type II secretion system (T2SS), protein M subtype b BJD12_16560 PF03958 Bacterial type II/III secretion system short domain BJD12_16560 PF00263 Bacterial type II and III secretion system protein BJD12_16580 PF00392 Bacterial regulatory proteins, gntR family BJD12_16580 PF07702 UTRA domain BJD12_16590 PF07715 TonB-dependent Receptor Plug Domain BJD12_16590 PF00593 TonB dependent receptor BJD12_16625 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BJD12_16625 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BJD12_16640 PF07238 PilZ domain BJD12_16640 PF03552 Cellulose synthase BJD12_16640 PF00535 Glycosyl transferase family 2 BJD12_16645 PF03170 Bacterial cellulose synthase subunit BJD12_16650 PF01270 Glycosyl hydrolases family 8 BJD12_16655 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BJD12_16670 PF03960 ArsC family BJD12_16675 PF01327 Polypeptide deformylase BJD12_16680 PF12848 ABC transporter BJD12_16680 PF00005 ABC transporter BJD12_16690 PF00464 Serine hydroxymethyltransferase BJD12_16695 PF03477 ATP cone domain BJD12_16705 PF01872 RibD C-terminal domain BJD12_16705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BJD12_16720 PF00677 Lumazine binding domain BJD12_16725 PF00925 GTP cyclohydrolase II BJD12_16725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BJD12_16730 PF00885 6,7-dimethyl-8-ribityllumazine synthase BJD12_16735 PF01029 NusB family BJD12_16740 PF00586 AIR synthase related protein, N-terminal domain BJD12_16740 PF02769 AIR synthase related protein, C-terminal domain BJD12_16765 PF03814 Potassium-transporting ATPase A subunit BJD12_16775 PF02669 K+-transporting ATPase, c chain BJD12_16780 PF00512 His Kinase A (phospho-acceptor) domain BJD12_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_16780 PF02702 Osmosensitive K+ channel His kinase sensor domain BJD12_16780 PF13492 GAF domain BJD12_16780 PF13493 Domain of unknown function (DUF4118) BJD12_16785 PF00486 Transcriptional regulatory protein, C terminal BJD12_16785 PF00072 Response regulator receiver domain BJD12_16790 PF07676 WD40-like Beta Propeller Repeat BJD12_16790 PF00326 Prolyl oligopeptidase family BJD12_16795 PF01565 FAD binding domain BJD12_16795 PF02913 FAD linked oxidases, C-terminal domain BJD12_16800 PF04307 LexA-binding, inner membrane-associated putative hydrolase BJD12_16805 PF02021 Uncharacterised protein family UPF0102 BJD12_16815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BJD12_16840 PF02381 MraZ protein, putative antitoxin-like BJD12_16845 PF01795 MraW methylase family BJD12_16850 PF04999 Cell division protein FtsL BJD12_16855 PF03717 Penicillin-binding Protein dimerisation domain BJD12_16855 PF00905 Penicillin binding protein transpeptidase domain BJD12_16860 PF02875 Mur ligase family, glutamate ligase domain BJD12_16860 PF01225 Mur ligase family, catalytic domain BJD12_16860 PF08245 Mur ligase middle domain BJD12_16865 PF01225 Mur ligase family, catalytic domain BJD12_16865 PF08245 Mur ligase middle domain BJD12_16865 PF02875 Mur ligase family, glutamate ligase domain BJD12_16870 PF00953 Glycosyl transferase family 4 BJD12_16875 PF01098 Cell cycle protein BJD12_16880 PF04101 Glycosyltransferase family 28 C-terminal domain BJD12_16880 PF03033 Glycosyltransferase family 28 N-terminal domain BJD12_16885 PF02875 Mur ligase family, glutamate ligase domain BJD12_16885 PF01225 Mur ligase family, catalytic domain BJD12_16885 PF08245 Mur ligase middle domain BJD12_16890 PF01820 D-ala D-ala ligase N-terminus BJD12_16890 PF07478 D-ala D-ala ligase C-terminus BJD12_16895 PF08478 POTRA domain, FtsQ-type BJD12_16895 PF03799 Cell division protein FtsQ BJD12_16900 PF02491 SHS2 domain inserted in FTSA BJD12_16905 PF12327 FtsZ family, C-terminal domain BJD12_16905 PF00091 Tubulin/FtsZ family, GTPase domain BJD12_16910 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BJD12_16920 PF08525 Opacity-associated protein A N-terminal motif BJD12_16920 PF01476 LysM domain BJD12_16920 PF01551 Peptidase family M23 BJD12_16925 PF02810 SEC-C motif BJD12_16925 PF07516 SecA Wing and Scaffold domain BJD12_16925 PF01043 SecA preprotein cross-linking domain BJD12_16925 PF07517 SecA DEAD-like domain BJD12_16940 PF00293 NUDIX domain BJD12_16955 PF02219 Methylenetetrahydrofolate reductase BJD12_16965 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_16965 PF08659 KR domain BJD12_16965 PF00698 Acyl transferase domain BJD12_16965 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_16965 PF00550 Phosphopantetheine attachment site BJD12_16965 PF16197 Ketoacyl-synthetase C-terminal extension BJD12_16965 PF00107 Zinc-binding dehydrogenase BJD12_16965 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_16965 PF14765 Polyketide synthase dehydratase BJD12_16980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD12_16995 PF00128 Alpha amylase, catalytic domain BJD12_17025 PF13649 Methyltransferase domain BJD12_17030 PF05221 S-adenosyl-L-homocysteine hydrolase BJD12_17030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BJD12_17040 PF00311 Phosphoenolpyruvate carboxylase BJD12_17060 PF00691 OmpA family BJD12_17060 PF00223 Photosystem I psaA/psaB protein BJD12_17075 PF00328 Histidine phosphatase superfamily (branch 2) BJD12_17080 PF00438 S-adenosylmethionine synthetase, N-terminal domain BJD12_17080 PF02773 S-adenosylmethionine synthetase, C-terminal domain BJD12_17080 PF02772 S-adenosylmethionine synthetase, central domain BJD12_17090 PF01207 Dihydrouridine synthase (Dus) BJD12_17100 PF00294 pfkB family carbohydrate kinase BJD12_17105 PF01773 Na+ dependent nucleoside transporter N-terminus BJD12_17105 PF07662 Na+ dependent nucleoside transporter C-terminus BJD12_17105 PF07670 Nucleoside recognition BJD12_17110 PF00248 Aldo/keto reductase family BJD12_17120 PF07715 TonB-dependent Receptor Plug Domain BJD12_17120 PF00593 TonB dependent receptor BJD12_17140 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_17145 PF00005 ABC transporter BJD12_17155 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BJD12_17165 PF00005 ABC transporter BJD12_17170 PF13472 GDSL-like Lipase/Acylhydrolase family BJD12_17175 PF00072 Response regulator receiver domain BJD12_17175 PF00486 Transcriptional regulatory protein, C terminal BJD12_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_17180 PF00512 His Kinase A (phospho-acceptor) domain BJD12_17180 PF08521 Two-component sensor kinase N-terminal BJD12_17190 PF01219 Prokaryotic diacylglycerol kinase BJD12_17200 PF04536 TPM domain BJD12_17210 PF01790 Prolipoprotein diacylglyceryl transferase BJD12_17215 PF00303 Thymidylate synthase BJD12_17225 PF00186 Dihydrofolate reductase BJD12_17230 PF00149 Calcineurin-like phosphoesterase BJD12_17235 PF04379 ApaG domain BJD12_17240 PF00398 Ribosomal RNA adenine dimethylase BJD12_17245 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BJD12_17250 PF09312 SurA N-terminal domain BJD12_17250 PF00639 PPIC-type PPIASE domain BJD12_17255 PF04453 LPS transport system D BJD12_17255 PF03968 OstA-like protein BJD12_17265 PF01923 Cobalamin adenosyltransferase BJD12_17275 PF01494 FAD binding domain BJD12_17280 PF01494 FAD binding domain BJD12_17300 PF07729 FCD domain BJD12_17300 PF00392 Bacterial regulatory proteins, gntR family BJD12_17305 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD12_17310 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BJD12_17310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BJD12_17315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_17315 PF03466 LysR substrate binding domain BJD12_17320 PF00501 AMP-binding enzyme BJD12_17320 PF13193 AMP-binding enzyme C-terminal domain BJD12_17325 PF00171 Aldehyde dehydrogenase family BJD12_17330 PF00378 Enoyl-CoA hydratase/isomerase BJD12_17355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BJD12_17355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BJD12_17360 PF18125 RlmM ferredoxin-like domain BJD12_17360 PF01728 FtsJ-like methyltransferase BJD12_17380 PF00892 EamA-like transporter family BJD12_17385 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BJD12_17385 PF00749 tRNA synthetases class I (E and Q), catalytic domain BJD12_17400 PF00990 Diguanylate cyclase, GGDEF domain BJD12_17400 PF00072 Response regulator receiver domain BJD12_17405 PF00072 Response regulator receiver domain BJD12_17405 PF01627 Hpt domain BJD12_17405 PF00672 HAMP domain BJD12_17405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_17405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD12_17405 PF00512 His Kinase A (phospho-acceptor) domain BJD12_17410 PF00072 Response regulator receiver domain BJD12_17410 PF00196 Bacterial regulatory proteins, luxR family BJD12_17420 PF01625 Peptide methionine sulfoxide reductase BJD12_17430 PF00923 Transaldolase/Fructose-6-phosphate aldolase BJD12_17435 PF01272 Transcription elongation factor, GreA/GreB, C-term BJD12_17435 PF14760 Rnk N-terminus BJD12_17440 PF03466 LysR substrate binding domain BJD12_17440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_17445 PF13192 Thioredoxin domain BJD12_17445 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_17450 PF00578 AhpC/TSA family BJD12_17450 PF10417 C-terminal domain of 1-Cys peroxiredoxin BJD12_17455 PF05175 Methyltransferase small domain BJD12_17455 PF17827 PrmC N-terminal domain BJD12_17460 PF00561 alpha/beta hydrolase fold BJD12_17470 PF00293 NUDIX domain BJD12_17475 PF01612 3'-5' exonuclease BJD12_17475 PF00476 DNA polymerase family A BJD12_17475 PF01367 5'-3' exonuclease, C-terminal SAM fold BJD12_17475 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BJD12_17480 PF00881 Nitroreductase family BJD12_17505 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BJD12_17505 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD12_17505 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BJD12_17525 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BJD12_17530 PF02233 NAD(P) transhydrogenase beta subunit BJD12_17550 PF01063 Amino-transferase class IV BJD12_17555 PF00082 Subtilase family BJD12_17555 PF04151 Bacterial pre-peptidase C-terminal domain BJD12_17560 PF00082 Subtilase family BJD12_17560 PF04151 Bacterial pre-peptidase C-terminal domain BJD12_17565 PF00082 Subtilase family BJD12_17565 PF04151 Bacterial pre-peptidase C-terminal domain BJD12_17575 PF04073 Aminoacyl-tRNA editing domain BJD12_17590 PF03358 NADPH-dependent FMN reductase BJD12_17595 PF03631 Virulence factor BrkB BJD12_17600 PF08534 Redoxin BJD12_17605 PF00708 Acylphosphatase BJD12_17615 PF03976 Polyphosphate kinase 2 (PPK2) BJD12_17620 PF00994 Probable molybdopterin binding domain BJD12_17630 PF00472 RF-1 domain BJD12_17630 PF03462 PCRF domain BJD12_17635 PF01488 Shikimate / quinate 5-dehydrogenase BJD12_17635 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BJD12_17635 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BJD12_17645 PF03550 Outer membrane lipoprotein LolB BJD12_17650 PF00288 GHMP kinases N terminal domain BJD12_17650 PF08544 GHMP kinases C terminal BJD12_17660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BJD12_17660 PF14572 Phosphoribosyl synthetase-associated domain BJD12_17665 PF14693 Ribosomal protein TL5, C-terminal domain BJD12_17665 PF01386 Ribosomal L25p family BJD12_17670 PF01195 Peptidyl-tRNA hydrolase BJD12_17675 PF01926 50S ribosome-binding GTPase BJD12_17675 PF06071 Protein of unknown function (DUF933) BJD12_17680 PF00589 Phage integrase family BJD12_17680 PF13356 Arm DNA-binding domain BJD12_17700 PF01555 DNA methylase BJD12_17735 PF03143 Elongation factor Tu C-terminal domain BJD12_17735 PF00009 Elongation factor Tu GTP binding domain BJD12_17735 PF03144 Elongation factor Tu domain 2 BJD12_17745 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BJD12_17750 PF02357 Transcription termination factor nusG BJD12_17750 PF00467 KOW motif BJD12_17755 PF00298 Ribosomal protein L11, RNA binding domain BJD12_17755 PF03946 Ribosomal protein L11, N-terminal domain BJD12_17760 PF00687 Ribosomal protein L1p/L10e family BJD12_17765 PF00466 Ribosomal protein L10 BJD12_17770 PF00542 Ribosomal protein L7/L12 C-terminal domain BJD12_17770 PF16320 Ribosomal protein L7/L12 dimerisation domain BJD12_17775 PF00562 RNA polymerase Rpb2, domain 6 BJD12_17775 PF04561 RNA polymerase Rpb2, domain 2 BJD12_17775 PF04565 RNA polymerase Rpb2, domain 3 BJD12_17775 PF04563 RNA polymerase beta subunit BJD12_17775 PF04560 RNA polymerase Rpb2, domain 7 BJD12_17775 PF10385 RNA polymerase beta subunit external 1 domain BJD12_17780 PF04997 RNA polymerase Rpb1, domain 1 BJD12_17780 PF00623 RNA polymerase Rpb1, domain 2 BJD12_17780 PF04983 RNA polymerase Rpb1, domain 3 BJD12_17780 PF04998 RNA polymerase Rpb1, domain 5 BJD12_17780 PF05000 RNA polymerase Rpb1, domain 4 BJD12_17785 PF00164 Ribosomal protein S12/S23 BJD12_17790 PF00177 Ribosomal protein S7p/S5e BJD12_17795 PF00679 Elongation factor G C-terminus BJD12_17795 PF03144 Elongation factor Tu domain 2 BJD12_17795 PF14492 Elongation Factor G, domain II BJD12_17795 PF03764 Elongation factor G, domain IV BJD12_17795 PF00009 Elongation factor Tu GTP binding domain BJD12_17800 PF03143 Elongation factor Tu C-terminal domain BJD12_17800 PF03144 Elongation factor Tu domain 2 BJD12_17800 PF00009 Elongation factor Tu GTP binding domain BJD12_17805 PF00338 Ribosomal protein S10p/S20e BJD12_17810 PF00297 Ribosomal protein L3 BJD12_17815 PF00573 Ribosomal protein L4/L1 family BJD12_17820 PF00276 Ribosomal protein L23 BJD12_17825 PF00181 Ribosomal Proteins L2, RNA binding domain BJD12_17825 PF03947 Ribosomal Proteins L2, C-terminal domain BJD12_17830 PF00203 Ribosomal protein S19 BJD12_17835 PF00237 Ribosomal protein L22p/L17e BJD12_17840 PF07650 KH domain BJD12_17840 PF00189 Ribosomal protein S3, C-terminal domain BJD12_17845 PF00252 Ribosomal protein L16p/L10e BJD12_17850 PF00831 Ribosomal L29 protein BJD12_17855 PF00366 Ribosomal protein S17 BJD12_17860 PF00238 Ribosomal protein L14p/L23e BJD12_17865 PF00467 KOW motif BJD12_17865 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BJD12_17870 PF00281 Ribosomal protein L5 BJD12_17870 PF00673 ribosomal L5P family C-terminus BJD12_17875 PF00253 Ribosomal protein S14p/S29e BJD12_17880 PF00410 Ribosomal protein S8 BJD12_17885 PF00347 Ribosomal protein L6 BJD12_17890 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BJD12_17895 PF03719 Ribosomal protein S5, C-terminal domain BJD12_17895 PF00333 Ribosomal protein S5, N-terminal domain BJD12_17900 PF00327 Ribosomal protein L30p/L7e BJD12_17905 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BJD12_17910 PF00344 SecY translocase BJD12_17915 PF00416 Ribosomal protein S13/S18 BJD12_17920 PF00411 Ribosomal protein S11 BJD12_17925 PF01479 S4 domain BJD12_17925 PF00163 Ribosomal protein S4/S9 N-terminal domain BJD12_17930 PF01000 RNA polymerase Rpb3/RpoA insert domain BJD12_17930 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BJD12_17930 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BJD12_17935 PF01196 Ribosomal protein L17 BJD12_17940 PF02600 Disulfide bond formation protein DsbB BJD12_17950 PF01474 Class-II DAHP synthetase family BJD12_17960 PF01425 Amidase BJD12_17975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BJD12_17980 PF00056 lactate/malate dehydrogenase, NAD binding domain BJD12_17980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BJD12_17985 PF02798 Glutathione S-transferase, N-terminal domain BJD12_17985 PF00043 Glutathione S-transferase, C-terminal domain BJD12_18000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD12_18000 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_18005 PF00107 Zinc-binding dehydrogenase BJD12_18005 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_18015 PF00691 OmpA family BJD12_18015 PF00223 Photosystem I psaA/psaB protein BJD12_18025 PF00849 RNA pseudouridylate synthase BJD12_18035 PF00155 Aminotransferase class I and II BJD12_18045 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_18050 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_18055 PF12857 TOBE-like domain BJD12_18055 PF00005 ABC transporter BJD12_18055 PF17850 CysA C-terminal regulatory domain BJD12_18070 PF00107 Zinc-binding dehydrogenase BJD12_18070 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_18080 PF05506 Domain of unknown function (DUF756) BJD12_18080 PF04185 Phosphoesterase family BJD12_18090 PF00300 Histidine phosphatase superfamily (branch 1) BJD12_18100 PF08245 Mur ligase middle domain BJD12_18100 PF02875 Mur ligase family, glutamate ligase domain BJD12_18115 PF00156 Phosphoribosyl transferase domain BJD12_18120 PF04305 Protein of unknown function (DUF455) BJD12_18135 PF00149 Calcineurin-like phosphoesterase BJD12_18140 PF01569 PAP2 superfamily BJD12_18150 PF02541 Ppx/GppA phosphatase family BJD12_18155 PF13090 Polyphosphate kinase C-terminal domain 2 BJD12_18155 PF17941 Polyphosphate kinase C-terminal domain 1 BJD12_18155 PF13089 Polyphosphate kinase N-terminal domain BJD12_18155 PF02503 Polyphosphate kinase middle domain BJD12_18160 PF11808 Phosphate regulon sensor protein PhoR BJD12_18160 PF00989 PAS fold BJD12_18160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_18160 PF00512 His Kinase A (phospho-acceptor) domain BJD12_18165 PF00486 Transcriptional regulatory protein, C terminal BJD12_18165 PF00072 Response regulator receiver domain BJD12_18170 PF13181 Tetratricopeptide repeat BJD12_18170 PF01435 Peptidase family M48 BJD12_18175 PF00462 Glutaredoxin BJD12_18185 PF00180 Isocitrate/isopropylmalate dehydrogenase BJD12_18315 PF08275 DNA primase catalytic core, N-terminal domain BJD12_18315 PF01807 CHC2 zinc finger BJD12_18315 PF10410 DnaB-helicase binding domain of primase BJD12_18355 PF00574 Clp protease BJD12_18505 PF00989 PAS fold BJD12_18505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_18505 PF00512 His Kinase A (phospho-acceptor) domain BJD12_18515 PF05697 Bacterial trigger factor protein (TF) BJD12_18515 PF05698 Bacterial trigger factor protein (TF) C-terminus BJD12_18520 PF00574 Clp protease BJD12_18525 PF10431 C-terminal, D2-small domain, of ClpB protein BJD12_18525 PF06689 ClpX C4-type zinc finger BJD12_18525 PF07724 AAA domain (Cdc48 subfamily) BJD12_18530 PF02190 ATP-dependent protease La (LON) substrate-binding domain BJD12_18530 PF05362 Lon protease (S16) C-terminal proteolytic domain BJD12_18530 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_18535 PF00216 Bacterial DNA-binding protein BJD12_18565 PF00753 Metallo-beta-lactamase superfamily BJD12_18565 PF16123 Hydroxyacylglutathione hydrolase C-terminus BJD12_18575 PF00075 RNase H BJD12_18580 PF00929 Exonuclease BJD12_18600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BJD12_18610 PF00753 Metallo-beta-lactamase superfamily BJD12_18610 PF12706 Beta-lactamase superfamily domain BJD12_18615 PF06463 Molybdenum Cofactor Synthesis C BJD12_18615 PF04055 Radical SAM superfamily BJD12_18625 PF01967 MoaC family BJD12_18630 PF02597 ThiS family BJD12_18635 PF02391 MoaE protein BJD12_18645 PF00589 Phage integrase family BJD12_18645 PF13356 Arm DNA-binding domain BJD12_18675 PF04002 RadC-like JAB domain BJD12_18715 PF05598 Transposase domain (DUF772) BJD12_18715 PF01609 Transposase DDE domain BJD12_18785 PF12169 DNA polymerase III subunits gamma and tau domain III BJD12_18785 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BJD12_18785 PF12170 DNA polymerase III tau subunit V interacting with alpha BJD12_18790 PF02575 YbaB/EbfC DNA-binding family BJD12_18795 PF02132 RecR protein BJD12_18795 PF13662 Toprim domain BJD12_18800 PF01230 HIT domain BJD12_18810 PF01841 Transglutaminase-like superfamily BJD12_18810 PF13559 Domain of unknown function (DUF4129) BJD12_18810 PF11992 Domain of unknown function (DUF3488) BJD12_18820 PF17863 AAA lid domain BJD12_18820 PF07726 ATPase family associated with various cellular activities (AAA) BJD12_18840 PF02545 Maf-like protein BJD12_18845 PF02620 Large ribosomal RNA subunit accumulation protein YceD BJD12_18850 PF01783 Ribosomal L32p protein family BJD12_18855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BJD12_18855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BJD12_18860 PF00698 Acyl transferase domain BJD12_18870 PF00550 Phosphopantetheine attachment site BJD12_18875 PF02801 Beta-ketoacyl synthase, C-terminal domain BJD12_18875 PF00109 Beta-ketoacyl synthase, N-terminal domain BJD12_18880 PF00425 chorismate binding enzyme BJD12_18880 PF04715 Anthranilate synthase component I, N terminal region BJD12_18885 PF02618 YceG-like family BJD12_18890 PF09115 DNA polymerase III, delta subunit, C terminal BJD12_18910 PF00158 Sigma-54 interaction domain BJD12_18910 PF06506 Propionate catabolism activator BJD12_18910 PF02954 Bacterial regulatory protein, Fis family BJD12_18920 PF00285 Citrate synthase, C-terminal domain BJD12_18925 PF00694 Aconitase C-terminal domain BJD12_18925 PF00330 Aconitase family (aconitate hydratase) BJD12_18935 PF04303 PrpF protein BJD12_18940 PF07715 TonB-dependent Receptor Plug Domain BJD12_18940 PF00593 TonB dependent receptor BJD12_18955 PF17962 Bacterial macroglobulin domain 6 BJD12_18955 PF07703 Alpha-2-macroglobulin bait region domain BJD12_18955 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BJD12_18955 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BJD12_18955 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BJD12_18955 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BJD12_18955 PF01835 MG2 domain BJD12_18955 PF00207 Alpha-2-macroglobulin family BJD12_19000 PF00905 Penicillin binding protein transpeptidase domain BJD12_19000 PF06832 Penicillin-Binding Protein C-terminus Family BJD12_19000 PF00912 Transglycosylase BJD12_19010 PF08534 Redoxin BJD12_19020 PF01556 DnaJ C terminal domain BJD12_19020 PF00226 DnaJ domain BJD12_19025 PF00072 Response regulator receiver domain BJD12_19030 PF01145 SPFH domain / Band 7 family BJD12_19030 PF12221 Bacterial membrane protein N terminal BJD12_19035 PF01145 SPFH domain / Band 7 family BJD12_19040 PF00709 Adenylosuccinate synthetase BJD12_19045 PF01433 Peptidase family M1 domain BJD12_19090 PF04851 Type III restriction enzyme, res subunit BJD12_19090 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) BJD12_19090 PF08463 EcoEI R protein C-terminal BJD12_19090 PF00271 Helicase conserved C-terminal domain BJD12_19105 PF02384 N-6 DNA Methylase BJD12_19105 PF12161 HsdM N-terminal domain BJD12_19110 PF01420 Type I restriction modification DNA specificity domain BJD12_19135 PF00440 Bacterial regulatory proteins, tetR family BJD12_19135 PF13977 BetI-type transcriptional repressor, C-terminal BJD12_19140 PF00300 Histidine phosphatase superfamily (branch 1) BJD12_19140 PF13456 Reverse transcriptase-like BJD12_19145 PF01256 Carbohydrate kinase BJD12_19155 PF00723 Glycosyl hydrolases family 15 BJD12_19170 PF07971 Glycosyl hydrolase family 92 BJD12_19170 PF17678 Glycosyl hydrolase family 92 N-terminal domain BJD12_19180 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_19215 PF17755 UvrA DNA-binding domain BJD12_19225 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_19225 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_19225 PF14310 Fibronectin type III-like domain BJD12_19230 PF08240 Alcohol dehydrogenase GroES-like domain BJD12_19230 PF00107 Zinc-binding dehydrogenase BJD12_19235 PF00440 Bacterial regulatory proteins, tetR family BJD12_19240 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_19240 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BJD12_19245 PF00941 FAD binding domain in molybdopterin dehydrogenase BJD12_19245 PF03450 CO dehydrogenase flavoprotein C-terminal domain BJD12_19250 PF01799 [2Fe-2S] binding domain BJD12_19250 PF00111 2Fe-2S iron-sulfur cluster binding domain BJD12_19275 PF00717 Peptidase S24-like BJD12_19275 PF01726 LexA DNA binding domain BJD12_19295 PF14579 Helix-hairpin-helix motif BJD12_19295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD12_19295 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD12_19295 PF02811 PHP domain BJD12_19310 PF03169 OPT oligopeptide transporter protein BJD12_19320 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region BJD12_19320 PF07676 WD40-like Beta Propeller Repeat BJD12_19320 PF00326 Prolyl oligopeptidase family BJD12_19335 PF02311 AraC-like ligand binding domain BJD12_19335 PF12833 Helix-turn-helix domain BJD12_19345 PF00199 Catalase BJD12_19345 PF06628 Catalase-related immune-responsive BJD12_19345 PF18011 C-terminal domain found in long catalases BJD12_19350 PF00248 Aldo/keto reductase family BJD12_19355 PF00135 Carboxylesterase family BJD12_19360 PF02347 Glycine cleavage system P-protein BJD12_19365 PF07690 Major Facilitator Superfamily BJD12_19385 PF00884 Sulfatase BJD12_19385 PF08019 Phosphoethanolamine transferase EptA/EptB BJD12_19400 PF00486 Transcriptional regulatory protein, C terminal BJD12_19400 PF00072 Response regulator receiver domain BJD12_19405 PF00512 His Kinase A (phospho-acceptor) domain BJD12_19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19415 PF03776 Septum formation topological specificity factor MinE BJD12_19420 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BJD12_19425 PF03775 Septum formation inhibitor MinC, C-terminal domain BJD12_19425 PF05209 Septum formation inhibitor MinC, N-terminal domain BJD12_19435 PF07730 Histidine kinase BJD12_19440 PF00072 Response regulator receiver domain BJD12_19440 PF00196 Bacterial regulatory proteins, luxR family BJD12_19455 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD12_19485 PF02222 ATP-grasp domain BJD12_19505 PF04376 Arginine-tRNA-protein transferase, N terminus BJD12_19505 PF04377 Arginine-tRNA-protein transferase, C terminus BJD12_19530 PF00378 Enoyl-CoA hydratase/isomerase BJD12_19540 PF00005 ABC transporter BJD12_19540 PF17755 UvrA DNA-binding domain BJD12_19540 PF17760 UvrA interaction domain BJD12_19545 PF00829 Ribosomal prokaryotic L21 protein BJD12_19550 PF01016 Ribosomal L27 protein BJD12_19555 PF01018 GTP1/OBG BJD12_19555 PF01926 50S ribosome-binding GTPase BJD12_19560 PF01649 Ribosomal protein S20 BJD12_19565 PF03023 Lipid II flippase MurJ BJD12_19570 PF01687 Riboflavin kinase BJD12_19570 PF06574 FAD synthetase BJD12_19575 PF06827 Zinc finger found in FPG and IleRS BJD12_19575 PF00133 tRNA synthetases class I (I, L, M and V) BJD12_19575 PF08264 Anticodon-binding domain of tRNA BJD12_19580 PF01252 Signal peptidase (SPase) II BJD12_19585 PF02401 LytB protein BJD12_19600 PF00115 Cytochrome C and Quinol oxidase polypeptide I BJD12_19605 PF00510 Cytochrome c oxidase subunit III BJD12_19610 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BJD12_19620 PF18073 Rubredoxin metal binding domain BJD12_19625 PF05656 Protein of unknown function (DUF805) BJD12_19635 PF12833 Helix-turn-helix domain BJD12_19640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19640 PF00183 Hsp90 protein BJD12_19650 PF08678 Rsbr N terminal BJD12_19650 PF01740 STAS domain BJD12_19655 PF01740 STAS domain BJD12_19660 PF13581 Histidine kinase-like ATPase domain BJD12_19670 PF00672 HAMP domain BJD12_19670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19670 PF17149 Periplasmic sensor domain found in signal transduction proteins BJD12_19670 PF00512 His Kinase A (phospho-acceptor) domain BJD12_19670 PF01627 Hpt domain BJD12_19670 PF00072 Response regulator receiver domain BJD12_19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19675 PF00512 His Kinase A (phospho-acceptor) domain BJD12_19675 PF00072 Response regulator receiver domain BJD12_19675 PF13188 PAS domain BJD12_19675 PF08448 PAS fold BJD12_19680 PF04616 Glycosyl hydrolases family 43 BJD12_19680 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BJD12_19685 PF00593 TonB dependent receptor BJD12_19685 PF07715 TonB-dependent Receptor Plug Domain BJD12_19690 PF00085 Thioredoxin BJD12_19695 PF07237 Protein of unknown function (DUF1428) BJD12_19700 PF00990 Diguanylate cyclase, GGDEF domain BJD12_19700 PF00072 Response regulator receiver domain BJD12_19705 PF01339 CheB methylesterase BJD12_19710 PF01739 CheR methyltransferase, SAM binding domain BJD12_19710 PF03705 CheR methyltransferase, all-alpha domain BJD12_19715 PF00672 HAMP domain BJD12_19715 PF00512 His Kinase A (phospho-acceptor) domain BJD12_19715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19715 PF00072 Response regulator receiver domain BJD12_19715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BJD12_19715 PF01627 Hpt domain BJD12_19720 PF13426 PAS domain BJD12_19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_19720 PF00072 Response regulator receiver domain BJD12_19725 PF00072 Response regulator receiver domain BJD12_19730 PF00722 Glycosyl hydrolases family 16 BJD12_19740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_19740 PF03466 LysR substrate binding domain BJD12_19745 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BJD12_19750 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BJD12_19755 PF01263 Aldose 1-epimerase BJD12_19760 PF01578 Cytochrome C assembly protein BJD12_19765 PF00448 SRP54-type protein, GTPase domain BJD12_19765 PF02881 SRP54-type protein, helical bundle domain BJD12_19765 PF02978 Signal peptide binding domain BJD12_19770 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) BJD12_19775 PF03060 Nitronate monooxygenase BJD12_19785 PF00886 Ribosomal protein S16 BJD12_19790 PF05239 PRC-barrel domain BJD12_19790 PF01782 RimM N-terminal domain BJD12_19795 PF01746 tRNA (Guanine-1)-methyltransferase BJD12_19800 PF01245 Ribosomal protein L19 BJD12_19805 PF01554 MatE BJD12_19810 PF01479 S4 domain BJD12_19815 PF00141 Peroxidase BJD12_19825 PF00488 MutS domain V BJD12_19825 PF01624 MutS domain I BJD12_19825 PF05188 MutS domain II BJD12_19825 PF05192 MutS domain III BJD12_19825 PF05190 MutS family domain IV BJD12_19835 PF13333 Integrase core domain BJD12_19835 PF13276 HTH-like domain BJD12_19835 PF00665 Integrase core domain BJD12_19840 PF01527 Transposase BJD12_19885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_19885 PF00672 HAMP domain BJD12_19885 PF02743 Cache domain BJD12_19905 PF16355 Domain of unknown function (DUF4982) BJD12_19905 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 BJD12_19905 PF00703 Glycosyl hydrolases family 2 BJD12_19905 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BJD12_19905 PF02837 Glycosyl hydrolases family 2, sugar binding domain BJD12_19910 PF07745 Glycosyl hydrolase family 53 BJD12_19920 PF01381 Helix-turn-helix BJD12_19920 PF09856 Predicted transcriptional regulator (DUF2083) BJD12_19920 PF06114 IrrE N-terminal-like domain BJD12_19925 PF00171 Aldehyde dehydrogenase family BJD12_19930 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_19930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_19930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_19935 PF00378 Enoyl-CoA hydratase/isomerase BJD12_19940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD12_19940 PF00378 Enoyl-CoA hydratase/isomerase BJD12_19940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD12_19945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BJD12_19945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BJD12_19950 PF01545 Cation efflux family BJD12_19960 PF00378 Enoyl-CoA hydratase/isomerase BJD12_19960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BJD12_19960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BJD12_19965 PF08281 Sigma-70, region 4 BJD12_19965 PF04542 Sigma-70 region 2 BJD12_19975 PF13180 PDZ domain BJD12_19980 PF06421 GTP-binding protein LepA C-terminus BJD12_19980 PF03144 Elongation factor Tu domain 2 BJD12_19980 PF00009 Elongation factor Tu GTP binding domain BJD12_19980 PF00679 Elongation factor G C-terminus BJD12_19985 PF10502 Signal peptidase, peptidase S26 BJD12_19995 PF00035 Double-stranded RNA binding motif BJD12_19995 PF14622 Ribonuclease-III-like BJD12_20000 PF07650 KH domain BJD12_20000 PF01926 50S ribosome-binding GTPase BJD12_20010 PF02565 Recombination protein O C terminal BJD12_20010 PF11967 Recombination protein O N terminal BJD12_20020 PF05958 tRNA (Uracil-5-)-methyltransferase BJD12_20035 PF01323 DSBA-like thioredoxin domain BJD12_20040 PF01593 Flavin containing amine oxidoreductase BJD12_20045 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BJD12_20050 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_20060 PF01048 Phosphorylase superfamily BJD12_20065 PF00313 'Cold-shock' DNA-binding domain BJD12_20070 PF01494 FAD binding domain BJD12_20080 PF08494 DEAD/H associated BJD12_20080 PF00270 DEAD/DEAH box helicase BJD12_20080 PF00271 Helicase conserved C-terminal domain BJD12_20085 PF04679 ATP dependent DNA ligase C terminal region BJD12_20085 PF04675 DNA ligase N terminus BJD12_20085 PF01068 ATP dependent DNA ligase domain BJD12_20095 PF04675 DNA ligase N terminus BJD12_20095 PF01068 ATP dependent DNA ligase domain BJD12_20095 PF04679 ATP dependent DNA ligase C terminal region BJD12_20110 PF00072 Response regulator receiver domain BJD12_20110 PF00990 Diguanylate cyclase, GGDEF domain BJD12_20125 PF00108 Thiolase, N-terminal domain BJD12_20125 PF02803 Thiolase, C-terminal domain BJD12_20130 PF12951 Passenger-associated-transport-repeat BJD12_20130 PF00082 Subtilase family BJD12_20130 PF03797 Autotransporter beta-domain BJD12_20135 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BJD12_20135 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BJD12_20145 PF01863 Protein of unknown function DUF45 BJD12_20150 PF07043 Protein of unknown function (DUF1328) BJD12_20160 PF01258 Prokaryotic dksA/traR C4-type zinc finger BJD12_20200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD12_20210 PF03831 PhnA domain BJD12_20210 PF08274 PhnA Zinc-Ribbon BJD12_20225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BJD12_20230 PF07690 Major Facilitator Superfamily BJD12_20265 PF03706 Lysylphosphatidylglycerol synthase TM region BJD12_20265 PF09924 Uncharacterised conserved protein (DUF2156) BJD12_20275 PF01042 Endoribonuclease L-PSP BJD12_20320 PF04542 Sigma-70 region 2 BJD12_20320 PF04545 Sigma-70, region 4 BJD12_20335 PF04060 Putative Fe-S cluster BJD12_20345 PF01588 Putative tRNA binding domain BJD12_20345 PF09334 tRNA synthetases class I (M) BJD12_20365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BJD12_20370 PF00324 Amino acid permease BJD12_20375 PF02574 Homocysteine S-methyltransferase BJD12_20385 PF02592 Putative vitamin uptake transporter BJD12_20410 PF03551 Transcriptional regulator PadR-like family BJD12_20440 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BJD12_20445 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BJD12_20445 PF02811 PHP domain BJD12_20445 PF01336 OB-fold nucleic acid binding domain BJD12_20445 PF14579 Helix-hairpin-helix motif BJD12_20445 PF07733 Bacterial DNA polymerase III alpha NTPase domain BJD12_20450 PF01351 Ribonuclease HII BJD12_20455 PF02684 Lipid-A-disaccharide synthetase BJD12_20460 PF00132 Bacterial transferase hexapeptide (six repeats) BJD12_20460 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BJD12_20465 PF07977 FabA-like domain BJD12_20470 PF00132 Bacterial transferase hexapeptide (six repeats) BJD12_20470 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BJD12_20480 PF07244 Surface antigen variable number repeat BJD12_20480 PF01103 Surface antigen BJD12_20485 PF02163 Peptidase family M50 BJD12_20485 PF17820 PDZ domain BJD12_20490 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BJD12_20490 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BJD12_20490 PF13288 DXP reductoisomerase C-terminal domain BJD12_20500 PF01255 Putative undecaprenyl diphosphate synthase BJD12_20505 PF01765 Ribosome recycling factor BJD12_20510 PF00696 Amino acid kinase family BJD12_20515 PF00072 Response regulator receiver domain BJD12_20515 PF00990 Diguanylate cyclase, GGDEF domain BJD12_20520 PF00889 Elongation factor TS BJD12_20525 PF00318 Ribosomal protein S2 BJD12_20560 PF00557 Metallopeptidase family M24 BJD12_20565 PF01909 Nucleotidyltransferase domain BJD12_20565 PF01966 HD domain BJD12_20565 PF08335 GlnD PII-uridylyltransferase BJD12_20570 PF00132 Bacterial transferase hexapeptide (six repeats) BJD12_20570 PF14602 Hexapeptide repeat of succinyl-transferase BJD12_20570 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BJD12_20580 PF03960 ArsC family BJD12_20585 PF07687 Peptidase dimerisation domain BJD12_20585 PF01546 Peptidase family M20/M25/M40 BJD12_20590 PF00733 Asparagine synthase BJD12_20590 PF13537 Glutamine amidotransferase domain BJD12_20600 PF00593 TonB dependent receptor BJD12_20600 PF07660 Secretin and TonB N terminus short domain BJD12_20600 PF07715 TonB-dependent Receptor Plug Domain BJD12_20605 PF01804 Penicillin amidase BJD12_20610 PF00210 Ferritin-like domain BJD12_20615 PF05724 Thiopurine S-methyltransferase (TPMT) BJD12_20625 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD12_20625 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD12_20640 PF02321 Outer membrane efflux protein BJD12_20645 PF00529 HlyD membrane-fusion protein of T1SS BJD12_20645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_20650 PF07690 Major Facilitator Superfamily BJD12_20665 PF14310 Fibronectin type III-like domain BJD12_20665 PF01915 Glycosyl hydrolase family 3 C-terminal domain BJD12_20665 PF00933 Glycosyl hydrolase family 3 N terminal domain BJD12_20675 PF00854 POT family BJD12_20700 PF12802 MarR family BJD12_20705 PF01432 Peptidase family M3 BJD12_20710 PF00255 Glutathione peroxidase BJD12_20715 PF00970 Oxidoreductase FAD-binding domain BJD12_20715 PF00175 Oxidoreductase NAD-binding domain BJD12_20720 PF00005 ABC transporter BJD12_20735 PF05683 Fumarase C-terminus BJD12_20735 PF05681 Fumarate hydratase (Fumerase) BJD12_20750 PF00484 Carbonic anhydrase BJD12_20755 PF02253 Phospholipase A1 BJD12_20765 PF00313 'Cold-shock' DNA-binding domain BJD12_20780 PF00899 ThiF family BJD12_20785 PF01026 TatD related DNase BJD12_20800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_20800 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_20800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_20810 PF02798 Glutathione S-transferase, N-terminal domain BJD12_20810 PF00043 Glutathione S-transferase, C-terminal domain BJD12_20815 PF13537 Glutamine amidotransferase domain BJD12_20815 PF00733 Asparagine synthase BJD12_20820 PF03358 NADPH-dependent FMN reductase BJD12_20825 PF00772 DnaB-like helicase N terminal domain BJD12_20825 PF03796 DnaB-like helicase C terminal domain BJD12_20830 PF03441 FAD binding domain of DNA photolyase BJD12_20830 PF00875 DNA photolyase BJD12_20840 PF05736 OprF membrane domain BJD12_20840 PF00691 OmpA family BJD12_20845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_20845 PF03466 LysR substrate binding domain BJD12_20860 PF00529 HlyD membrane-fusion protein of T1SS BJD12_20860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_20865 PF00873 AcrB/AcrD/AcrF family BJD12_20870 PF00106 short chain dehydrogenase BJD12_20875 PF02321 Outer membrane efflux protein BJD12_20880 PF08448 PAS fold BJD12_20880 PF00990 Diguanylate cyclase, GGDEF domain BJD12_20890 PF00990 Diguanylate cyclase, GGDEF domain BJD12_20905 PF00082 Subtilase family BJD12_20910 PF01668 SmpB protein BJD12_20920 PF03658 RnfH family Ubiquitin BJD12_20925 PF04355 SmpA / OmlA family BJD12_20930 PF01475 Ferric uptake regulator family BJD12_20935 PF02463 RecF/RecN/SMC N terminal domain BJD12_20940 PF01628 HrcA protein C terminal domain BJD12_20940 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BJD12_20945 PF01025 GrpE BJD12_20950 PF00012 Hsp70 protein BJD12_20955 PF01556 DnaJ C terminal domain BJD12_20955 PF00684 DnaJ central domain BJD12_20955 PF00226 DnaJ domain BJD12_20960 PF08543 Phosphomethylpyrimidine kinase BJD12_20985 PF00005 ABC transporter BJD12_20985 PF00664 ABC transporter transmembrane region BJD12_20985 PF03412 Peptidase C39 family BJD12_20990 PF03466 LysR substrate binding domain BJD12_20990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_20995 PF00005 ABC transporter BJD12_20995 PF00664 ABC transporter transmembrane region BJD12_21000 PF01205 Uncharacterized protein family UPF0029 BJD12_21005 PF03641 Possible lysine decarboxylase BJD12_21010 PF07992 Pyridine nucleotide-disulphide oxidoreductase BJD12_21010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BJD12_21015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BJD12_21015 PF00364 Biotin-requiring enzyme BJD12_21015 PF02817 e3 binding domain BJD12_21020 PF16078 2-oxoglutarate dehydrogenase N-terminus BJD12_21020 PF02779 Transketolase, pyrimidine binding domain BJD12_21020 PF16870 2-oxoglutarate dehydrogenase C-terminal BJD12_21020 PF00676 Dehydrogenase E1 component BJD12_21030 PF08007 Cupin superfamily protein BJD12_21040 PF00206 Lyase BJD12_21040 PF08328 Adenylosuccinate lyase C-terminal BJD12_21045 PF01595 Cyclin M transmembrane N-terminal domain BJD12_21045 PF00571 CBS domain BJD12_21045 PF03471 Transporter associated domain BJD12_21050 PF00206 Lyase BJD12_21050 PF10415 Fumarase C C-terminus BJD12_21075 PF00005 ABC transporter BJD12_21080 PF00392 Bacterial regulatory proteins, gntR family BJD12_21090 PF00255 Glutathione peroxidase BJD12_21095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD12_21095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD12_21100 PF04102 SlyX BJD12_21120 PF07690 Major Facilitator Superfamily BJD12_21125 PF00294 pfkB family carbohydrate kinase BJD12_21135 PF02965 Vitamin B12 dependent methionine synthase, activation domain BJD12_21135 PF00809 Pterin binding enzyme BJD12_21135 PF02310 B12 binding domain BJD12_21135 PF02574 Homocysteine S-methyltransferase BJD12_21135 PF02607 B12 binding domain BJD12_21140 PF00809 Pterin binding enzyme BJD12_21140 PF02574 Homocysteine S-methyltransferase BJD12_21145 PF01209 ubiE/COQ5 methyltransferase family BJD12_21150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BJD12_21150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BJD12_21150 PF02770 Acyl-CoA dehydrogenase, middle domain BJD12_21165 PF17876 Cold shock domain BJD12_21165 PF08206 Ribonuclease B OB domain BJD12_21165 PF00575 S1 RNA binding domain BJD12_21165 PF00773 RNB domain BJD12_21165 PF08461 Ribonuclease R winged-helix domain BJD12_21175 PF00588 SpoU rRNA Methylase family BJD12_21175 PF08032 RNA 2'-O ribose methyltransferase substrate binding BJD12_21180 PF00990 Diguanylate cyclase, GGDEF domain BJD12_21180 PF07694 5TMR of 5TMR-LYT BJD12_21185 PF00929 Exonuclease BJD12_21195 PF01527 Transposase BJD12_21205 PF01895 PhoU domain BJD12_21210 PF00005 ABC transporter BJD12_21215 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_21220 PF00528 Binding-protein-dependent transport system inner membrane component BJD12_21225 PF12849 PBP superfamily domain BJD12_21245 PF00484 Carbonic anhydrase BJD12_21250 PF00916 Sulfate permease family BJD12_21250 PF01740 STAS domain BJD12_21255 PF10576 Iron-sulfur binding domain of endonuclease III BJD12_21255 PF00633 Helix-hairpin-helix motif BJD12_21255 PF00730 HhH-GPD superfamily base excision DNA repair protein BJD12_21265 PF00378 Enoyl-CoA hydratase/isomerase BJD12_21270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BJD12_21270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BJD12_21275 PF00293 NUDIX domain BJD12_21280 PF00581 Rhodanese-like domain BJD12_21325 PF02926 THUMP domain BJD12_21325 PF10672 S-adenosylmethionine-dependent methyltransferase BJD12_21325 PF01170 Putative RNA methylase family UPF0020 BJD12_21335 PF01513 ATP-NAD kinase BJD12_21360 PF00929 Exonuclease BJD12_21360 PF08411 Exonuclease C-terminal BJD12_21365 PF01494 FAD binding domain BJD12_21370 PF00266 Aminotransferase class-V BJD12_21380 PF06052 3-hydroxyanthranilic acid dioxygenase BJD12_21385 PF00484 Carbonic anhydrase BJD12_21410 PF01336 OB-fold nucleic acid binding domain BJD12_21410 PF00152 tRNA synthetases class II (D, K and N) BJD12_21415 PF01521 Iron-sulphur cluster biosynthesis BJD12_21420 PF01250 Ribosomal protein S6 BJD12_21425 PF01084 Ribosomal protein S18 BJD12_21430 PF03948 Ribosomal protein L9, C-terminal domain BJD12_21430 PF01281 Ribosomal protein L9, N-terminal domain BJD12_21435 PF02463 RecF/RecN/SMC N terminal domain BJD12_21440 PF04354 ZipA, C-terminal FtsZ-binding domain BJD12_21450 PF00155 Aminotransferase class I and II BJD12_21455 PF01653 NAD-dependent DNA ligase adenylation domain BJD12_21455 PF00533 BRCA1 C Terminus (BRCT) domain BJD12_21455 PF12826 Helix-hairpin-helix motif BJD12_21455 PF03120 NAD-dependent DNA ligase OB-fold domain BJD12_21455 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BJD12_21460 PF00152 tRNA synthetases class II (D, K and N) BJD12_21490 PF01008 Initiation factor 2 subunit family BJD12_21495 PF00521 DNA gyrase/topoisomerase IV, subunit A BJD12_21495 PF03989 DNA gyrase C-terminal domain, beta-propeller BJD12_21500 PF13360 PQQ-like domain BJD12_21515 PF17392 Urocanase C-terminal domain BJD12_21515 PF17391 Urocanase N-terminal domain BJD12_21515 PF01175 Urocanase Rossmann-like domain BJD12_21525 PF00221 Aromatic amino acid lyase BJD12_21530 PF07969 Amidohydrolase family BJD12_21570 PF01794 Ferric reductase like transmembrane component BJD12_21575 PF00174 Oxidoreductase molybdopterin binding domain BJD12_21580 PF00266 Aminotransferase class-V BJD12_21585 PF01842 ACT domain BJD12_21585 PF00800 Prephenate dehydratase BJD12_21585 PF01817 Chorismate mutase type II BJD12_21590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BJD12_21600 PF03544 Gram-negative bacterial TonB protein C-terminal BJD12_21605 PF02403 Seryl-tRNA synthetase N-terminal domain BJD12_21605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BJD12_21610 PF02525 Flavodoxin-like fold BJD12_21615 PF03466 LysR substrate binding domain BJD12_21615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_21690 PF04002 RadC-like JAB domain BJD12_21780 PF02203 Tar ligand binding domain homologue BJD12_21780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_21780 PF00672 HAMP domain BJD12_21785 PF00512 His Kinase A (phospho-acceptor) domain BJD12_21785 PF08448 PAS fold BJD12_21785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_21785 PF13188 PAS domain BJD12_21785 PF00072 Response regulator receiver domain BJD12_21790 PF00072 Response regulator receiver domain BJD12_21790 PF03861 ANTAR domain BJD12_21795 PF06745 KaiC BJD12_21800 PF00072 Response regulator receiver domain BJD12_21800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_21800 PF13426 PAS domain BJD12_21810 PF03918 Cytochrome C biogenesis protein BJD12_21815 PF08534 Redoxin BJD12_21820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BJD12_21820 PF01578 Cytochrome C assembly protein BJD12_21825 PF03100 CcmE BJD12_21830 PF04995 Heme exporter protein D (CcmD) BJD12_21835 PF01578 Cytochrome C assembly protein BJD12_21840 PF00082 Subtilase family BJD12_21850 PF04542 Sigma-70 region 2 BJD12_21850 PF08281 Sigma-70, region 4 BJD12_21860 PF00034 Cytochrome c BJD12_21880 PF05523 WxcM-like, C-terminal BJD12_21885 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BJD12_21890 PF01943 Polysaccharide biosynthesis protein BJD12_21895 PF00535 Glycosyl transferase family 2 BJD12_21920 PF01979 Amidohydrolase family BJD12_21920 PF13382 Adenine deaminase C-terminal domain BJD12_21925 PF13649 Methyltransferase domain BJD12_21935 PF00534 Glycosyl transferases group 1 BJD12_21935 PF13579 Glycosyl transferase 4-like domain BJD12_21950 PF00005 ABC transporter BJD12_21955 PF00664 ABC transporter transmembrane region BJD12_21955 PF00005 ABC transporter BJD12_21960 PF07690 Major Facilitator Superfamily BJD12_21965 PF00296 Luciferase-like monooxygenase BJD12_21980 PF00571 CBS domain BJD12_21980 PF03471 Transporter associated domain BJD12_21980 PF01595 Cyclin M transmembrane N-terminal domain BJD12_21995 PF01384 Phosphate transporter family BJD12_22000 PF02698 DUF218 domain BJD12_22010 PF02611 CDP-diacylglycerol pyrophosphatase BJD12_22015 PF00986 DNA gyrase B subunit, carboxyl terminus BJD12_22015 PF00204 DNA gyrase B BJD12_22015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BJD12_22015 PF01751 Toprim domain BJD12_22025 PF06418 CTP synthase N-terminus BJD12_22025 PF00117 Glutamine amidotransferase class-I BJD12_22030 PF00793 DAHP synthetase I family BJD12_22040 PF03952 Enolase, N-terminal domain BJD12_22040 PF00113 Enolase, C-terminal TIM barrel domain BJD12_22045 PF04977 Septum formation initiator BJD12_22050 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BJD12_22055 PF02542 YgbB family BJD12_22060 PF01142 tRNA pseudouridine synthase D (TruD) BJD12_22065 PF01713 Smr domain BJD12_22070 PF01975 Survival protein SurE BJD12_22080 PF09335 SNARE associated Golgi protein BJD12_22085 PF01551 Peptidase family M23 BJD12_22085 PF01476 LysM domain BJD12_22090 PF04430 Protein of unknown function (DUF498/DUF598) BJD12_22095 PF01985 CRS1 / YhbY (CRM) domain BJD12_22100 PF01728 FtsJ-like methyltransferase BJD12_22105 PF17862 AAA+ lid domain BJD12_22105 PF00004 ATPase family associated with various cellular activities (AAA) BJD12_22105 PF01434 Peptidase family M41 BJD12_22105 PF06480 FtsH Extracellular BJD12_22110 PF00809 Pterin binding enzyme BJD12_22120 PF17209 Hfq protein BJD12_22125 PF16360 GTP-binding GTPase Middle Region BJD12_22125 PF13167 GTP-binding GTPase N-terminal BJD12_22125 PF01926 50S ribosome-binding GTPase BJD12_22130 PF02464 Competence-damaged protein BJD12_22135 PF07715 TonB-dependent Receptor Plug Domain BJD12_22135 PF00593 TonB dependent receptor BJD12_22140 PF03109 ABC1 family BJD12_22145 PF01726 LexA DNA binding domain BJD12_22145 PF00717 Peptidase S24-like BJD12_22150 PF00154 recA bacterial DNA recombination protein BJD12_22155 PF02631 RecX family BJD12_22160 PF01411 tRNA synthetases class II (A) BJD12_22160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BJD12_22160 PF02272 DHHA1 domain BJD12_22165 PF02599 Global regulator protein family BJD12_22175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BJD12_22175 PF08447 PAS fold BJD12_22175 PF13426 PAS domain BJD12_22180 PF17954 Quercetinase C-terminal cupin domain BJD12_22180 PF02678 Pirin BJD12_22185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_22185 PF03466 LysR substrate binding domain BJD12_22210 PF08543 Phosphomethylpyrimidine kinase BJD12_22210 PF02581 Thiamine monophosphate synthase BJD12_22225 PF02562 PhoH-like protein BJD12_22225 PF13638 PIN domain BJD12_22230 PF00578 AhpC/TSA family BJD12_22245 PF00701 Dihydrodipicolinate synthetase family BJD12_22255 PF11953 Domain of unknown function (DUF3470) BJD12_22255 PF00037 4Fe-4S binding domain BJD12_22260 PF05035 2-keto-3-deoxy-galactonokinase BJD12_22265 PF08450 SMP-30/Gluconolactonase/LRE-like region BJD12_22270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BJD12_22270 PF13378 Enolase C-terminal domain-like BJD12_22275 PF01081 KDPG and KHG aldolase BJD12_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BJD12_22285 PF03466 LysR substrate binding domain BJD12_22300 PF03442 Carbohydrate binding domain X2 BJD12_22300 PF00942 Cellulose binding domain BJD12_22315 PF16338 Domain of unknown function (DUF4968) BJD12_22315 PF17137 Domain of unknown function (DUF5110) BJD12_22315 PF01055 Glycosyl hydrolases family 31 BJD12_22325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BJD12_22325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BJD12_22335 PF00083 Sugar (and other) transporter BJD12_22355 PF01520 N-acetylmuramoyl-L-alanine amidase BJD12_22360 PF02649 Type I GTP cyclohydrolase folE2 BJD12_22370 PF12627 Probable RNA and SrmB- binding site of polymerase A BJD12_22370 PF01743 Poly A polymerase head domain BJD12_22370 PF12626 Polymerase A arginine-rich C-terminus BJD12_22375 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BJD12_22470 PF13614 AAA domain BJD12_22630 PF13307 Helicase C-terminal domain BJD12_22630 PF06733 DEAD_2 BJD12_22640 PF01966 HD domain BJD12_22650 PF00072 Response regulator receiver domain BJD12_22650 PF00486 Transcriptional regulatory protein, C terminal BJD12_22670 PF13098 Thioredoxin-like domain BJD12_22670 PF10411 Disulfide bond isomerase protein N-terminus BJD12_22695 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BJD12_22695 PF10135 Rod binding protein BJD12_22725 PF04381 Putative exonuclease, RdgC BJD12_22730 PF00565 Staphylococcal nuclease homologue BJD12_22785 PF17762 HTH domain found in ParB protein BJD12_22785 PF02195 ParB-like nuclease domain BJD12_22820 PF00436 Single-strand binding protein family BJD12_22850 PF04851 Type III restriction enzyme, res subunit BJD12_22850 PF00271 Helicase conserved C-terminal domain BJD12_22880 PF00580 UvrD/REP helicase N-terminal domain BJD12_22880 PF13361 UvrD-like helicase C-terminal domain BJD12_22950 PF02683 Cytochrome C biogenesis protein transmembrane region BJD12_22950 PF11412 Disulphide bond corrector protein DsbC BJD12_22955 PF00580 UvrD/REP helicase N-terminal domain BJD12_22955 PF13361 UvrD-like helicase C-terminal domain BJD12_22995 PF01526 Tn3 transposase DDE domain BJD12_22995 PF13700 Domain of unknown function (DUF4158) BJD12_23005 PF00376 MerR family regulatory protein BJD12_23005 PF09278 MerR, DNA binding BJD12_23025 PF00529 HlyD membrane-fusion protein of T1SS BJD12_23025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_23040 PF02040 Arsenical pump membrane protein BJD12_23045 PF03358 NADPH-dependent FMN reductase BJD12_23050 PF03960 ArsC family BJD12_23070 PF13175 AAA ATPase domain BJD12_23095 PF00394 Multicopper oxidase BJD12_23095 PF07731 Multicopper oxidase BJD12_23095 PF07732 Multicopper oxidase BJD12_23100 PF05275 Copper resistance protein B precursor (CopB) BJD12_23130 PF05425 Copper resistance protein D BJD12_23135 PF04945 YHS domain BJD12_23150 PF00491 Arginase family BJD12_23165 PF00873 AcrB/AcrD/AcrF family BJD12_23170 PF00529 HlyD membrane-fusion protein of T1SS BJD12_23170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BJD12_23295 PF06834 TraU protein BJD12_23335 PF09722 Protein of unknown function (DUF2384) BJD12_23335 PF01936 NYN domain BJD12_23375 PF13683 Integrase core domain BJD12_23375 PF13276 HTH-like domain BJD12_23380 PF01527 Transposase BJD12_23400 PF01751 Toprim domain BJD12_23400 PF01131 DNA topoisomerase BJD12_23420 PF03743 Bacterial conjugation TrbI-like protein BJD12_23435 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BJD12_23445 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BJD12_23460 PF00437 Type II/IV secretion system protein BJD12_23485 PF07519 Tannase and feruloyl esterase BJD12_23505 PF02534 Type IV secretory system Conjugative DNA transfer BJD12_23595 PF03421 YopJ Serine/Threonine acetyltransferase