locus-tag	class	description
BJD12_00010	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BJD12_00035	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD12_00050	COG2203	Gaf domain
BJD12_00050	COG3706	GGDEF domain
BJD12_00050	COG4251	negative regulation of phosphorylation
BJD12_00050	COG5001	Diguanylate cyclase
BJD12_00055	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD12_00060	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
BJD12_00070	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD12_00075	COG0671	phosphoesterase, PA-phosphatase related
BJD12_00085	COG1794	racemase activity, acting on amino acids and derivatives
BJD12_00090	COG0697	spore germination
BJD12_00095	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD12_00115	COG1012	belongs to the aldehyde dehydrogenase family
BJD12_00145	COG2963	transposase activity
BJD12_00150	COG2801	Transposase and inactivated derivatives
BJD12_00205	COG2003	Belongs to the UPF0758 family
BJD12_00360	COG2814	Major facilitator Superfamily
BJD12_00435	COG0840	transmembrane signaling receptor activity
BJD12_00450	COG1215	transferase activity, transferring glycosyl groups
BJD12_00455	COG1649	PFAM Uncharacterised BCR, COG1649
BJD12_00455	COG0726	polysaccharide deacetylase
BJD12_00505	COG2801	Transposase and inactivated derivatives
BJD12_00510	COG2963	transposase activity
BJD12_00525	COG0527	aspartate kinase activity
BJD12_00525	COG0460	homoserine dehydrogenase
BJD12_00540	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD12_00550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD12_00555	COG0124	histidyl-tRNA synthetase
BJD12_00570	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD12_00575	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD12_00580	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD12_00580	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD12_00585	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD12_00590	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD12_00595	COG0107	imidazoleglycerol-phosphate synthase activity
BJD12_00600	COG0140	phosphoribosyl-ATP diphosphatase activity
BJD12_00600	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BJD12_00620	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
BJD12_00625	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BJD12_00640	COG0531	amino acid
BJD12_00645	COG0531	amino acid
BJD12_00655	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD12_00660	COG0277	FAD linked oxidase domain protein
BJD12_00680	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD12_00700	COG1024	Enoyl-CoA hydratase
BJD12_00725	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD12_00730	COG2258	MOSC domain
BJD12_00740	COG0505	Belongs to the CarA family
BJD12_00750	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD12_00755	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD12_00765	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD12_00780	COG3279	Response regulator of the LytR AlgR family
BJD12_00785	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BJD12_00790	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD12_00805	COG2205	protein histidine kinase activity
BJD12_00805	COG0784	Response regulator, receiver
BJD12_00805	COG2198	Histidine kinase
BJD12_00810	COG1024	Enoyl-CoA hydratase
BJD12_00815	COG0318	PFAM AMP-dependent synthetase and ligase
BJD12_00845	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD12_00855	COG2201	protein-glutamate methylesterase activity
BJD12_00870	COG0840	transmembrane signaling receptor activity
BJD12_00880	COG0835	chemotaxis
BJD12_00895	COG0840	transmembrane signaling receptor activity
BJD12_00905	COG0840	transmembrane signaling receptor activity
BJD12_00910	COG0840	transmembrane signaling receptor activity
BJD12_00915	COG0840	transmembrane signaling receptor activity
BJD12_00930	COG0840	transmembrane signaling receptor activity
BJD12_00935	COG0840	transmembrane signaling receptor activity
BJD12_00955	COG0745	RESPONSE REGULATOR receiver
BJD12_00965	COG0835	chemotaxis
BJD12_00970	COG1192	Involved in chromosome partitioning
BJD12_00980	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD12_01035	COG2963	transposase activity
BJD12_01040	COG2801	Transposase and inactivated derivatives
BJD12_01055	COG0643	Histidine kinase
BJD12_01055	COG2198	Histidine kinase
BJD12_01075	COG0455	bacterial-type flagellum organization
BJD12_01105	COG3300	MHYT domain
BJD12_01105	COG5001	Diguanylate cyclase
BJD12_01115	COG1987	bacterial-type flagellum assembly
BJD12_01180	COG1677	Flagellar hook-basal body complex protein FliE
BJD12_01230	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_01250	COG2204	response regulator
BJD12_01255	COG2201	protein-glutamate methylesterase activity
BJD12_01285	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD12_01290	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD12_01295	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD12_01305	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD12_01305	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD12_01320	COG4786	Flagellar basal body rod
BJD12_01335	COG4787	bacterial-type flagellum-dependent cell motility
BJD12_01340	COG1749	Flagellar hook protein flgE
BJD12_01345	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BJD12_01350	COG1558	bacterial-type flagellum-dependent cell motility
BJD12_01355	COG1815	bacterial-type flagellum-dependent cell motility
BJD12_01360	COG0835	chemotaxis
BJD12_01360	COG0784	Response regulator, receiver
BJD12_01380	COG4191	Histidine kinase
BJD12_01420	COG0482	sulfurtransferase activity
BJD12_01435	COG0542	response to heat
BJD12_01445	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD12_01460	COG0492	ferredoxin-NADP+ reductase activity
BJD12_01465	COG1674	ftsk spoiiie
BJD12_01480	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD12_01485	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD12_01490	COG0183	Belongs to the thiolase family
BJD12_01495	COG1024	Enoyl-CoA hydratase
BJD12_01495	COG1250	3-hydroxyacyl-CoA dehydrogenase
BJD12_01505	COG0105	UTP biosynthetic process
BJD12_01520	COG1426	Protein conserved in bacteria
BJD12_01530	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD12_01535	COG1160	GTP binding
BJD12_01545	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD12_01560	COG0708	Exodeoxyribonuclease III
BJD12_01575	COG0746	molybdenum cofactor guanylyltransferase activity
BJD12_01585	COG1648	precorrin-2 dehydrogenase activity
BJD12_01585	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD12_01595	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BJD12_01605	COG2223	nitrite transmembrane transporter activity
BJD12_01610	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD12_01615	COG2146	nitrite reductase [NAD(P)H] activity
BJD12_01620	COG0243	molybdopterin cofactor binding
BJD12_01635	COG3685	Protein conserved in bacteria
BJD12_01645	COG5001	Diguanylate cyclase
BJD12_01715	COG1238	metal cluster binding
BJD12_01725	COG3226	Transcriptional regulator
BJD12_01735	COG2223	nitrite transmembrane transporter activity
BJD12_01740	COG4221	oxidoreductase activity
BJD12_01765	COG0363	glucosamine-6-phosphate deaminase activity
BJD12_01785	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD12_01790	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_01805	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD12_01815	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_01820	COG0583	DNA-binding transcription factor activity
BJD12_01835	COG2369	cell adhesion
BJD12_02030	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD12_02040	COG0428	transporter
BJD12_02045	COG3064	Membrane
BJD12_02055	COG1530	ribonuclease E activity
BJD12_02085	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BJD12_02125	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD12_02130	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD12_02135	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD12_02140	COG1132	(ABC) transporter
BJD12_02150	COG0811	peptide transport
BJD12_02175	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD12_02185	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BJD12_02190	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD12_02205	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD12_02220	COG0354	folic acid binding
BJD12_02230	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD12_02235	COG0837	glucose binding
BJD12_02240	COG0363	glucosamine-6-phosphate deaminase activity
BJD12_02245	COG0129	dihydroxy-acid dehydratase activity
BJD12_02250	COG0800	Aldolase
BJD12_02315	COG5002	protein histidine kinase activity
BJD12_02315	COG0784	Response regulator, receiver
BJD12_02315	COG2205	protein histidine kinase activity
BJD12_02320	COG2183	response to ionizing radiation
BJD12_02345	COG3243	poly(R)-hydroxyalkanoic acid synthase
BJD12_02355	COG1183	phosphatidylcholine synthase activity
BJD12_02360	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_02385	COG0668	transmembrane transport
BJD12_02390	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD12_02395	COG0590	tRNA wobble adenosine to inosine editing
BJD12_02400	COG1321	iron dependent repressor
BJD12_02405	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD12_02420	COG2814	Major facilitator Superfamily
BJD12_02435	COG1335	isochorismatase
BJD12_02445	COG4585	Histidine kinase
BJD12_02450	COG2197	response regulator
BJD12_02475	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD12_02485	COG0475	glutathione-regulated potassium exporter activity
BJD12_02485	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD12_02490	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BJD12_02500	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD12_02505	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD12_02515	COG0776	regulation of translation
BJD12_02520	COG0539	negative regulation of cytoplasmic translation
BJD12_02525	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BJD12_02530	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BJD12_02540	COG2957	Belongs to the agmatine deiminase family
BJD12_02545	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD12_02570	COG0395	ABC-type sugar transport system, permease component
BJD12_02575	COG1175	transmembrane transport
BJD12_02580	COG1653	transport
BJD12_02605	COG2350	Protein conserved in bacteria
BJD12_02610	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BJD12_02615	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BJD12_02620	COG1187	pseudouridine synthase activity
BJD12_02635	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD12_02645	COG0436	Aminotransferase
BJD12_02650	COG4133	protoheme IX ABC transporter activity
BJD12_02715	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD12_02725	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD12_02730	COG4988	ABC transporter
BJD12_02740	COG1294	oxidase, subunit
BJD12_02765	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BJD12_02785	COG0165	Argininosuccinate lyase
BJD12_02800	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BJD12_02805	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD12_02815	COG0137	argininosuccinate synthase activity
BJD12_02825	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BJD12_02835	COG0215	cysteine-tRNA ligase activity
BJD12_02840	COG2166	iron-sulfur cluster assembly
BJD12_02850	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD12_02860	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BJD12_02880	COG4302	ethanolamine ammonia-lyase activity
BJD12_02920	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD12_02925	COG0402	S-adenosylhomocysteine deaminase activity
BJD12_02940	COG1509	lysine 2,3-aminomutase activity
BJD12_02945	COG3300	MHYT domain
BJD12_02945	COG5001	Diguanylate cyclase
BJD12_02960	COG0483	inositol monophosphate 1-phosphatase activity
BJD12_02990	COG0513	Belongs to the DEAD box helicase family
BJD12_03000	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD12_03005	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD12_03015	COG0625	glutathione transferase activity
BJD12_03030	COG4681	YaeQ
BJD12_03035	COG2081	HI0933 family
BJD12_03045	COG0501	Belongs to the peptidase M48B family
BJD12_03050	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD12_03055	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_03075	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD12_03080	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD12_03090	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD12_03090	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD12_03095	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD12_03110	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD12_03145	COG0582	viral genome integration into host DNA
BJD12_03180	COG0835	chemotaxis
BJD12_03185	COG0840	transmembrane signaling receptor activity
BJD12_03190	COG2094	Belongs to the DNA glycosylase MPG family
BJD12_03195	COG1201	RNA secondary structure unwinding
BJD12_03210	COG2969	positive regulation of protein catabolic process
BJD12_03215	COG0625	glutathione transferase activity
BJD12_03220	COG2857	Cytochrome c1
BJD12_03225	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD12_03230	COG0723	plastoquinol--plastocyanin reductase activity
BJD12_03235	COG0741	lytic transglycosylase activity
BJD12_03255	COG1702	phosphate starvation-inducible protein PhoH
BJD12_03265	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD12_03275	COG4535	Mg2 and Co2 transporter CorC
BJD12_03290	COG1012	belongs to the aldehyde dehydrogenase family
BJD12_03300	COG1177	transmembrane transport
BJD12_03305	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD12_03310	COG3842	ATPase activity
BJD12_03330	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD12_03350	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
BJD12_03355	COG0174	glutamine synthetase
BJD12_03360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD12_03365	COG3706	GGDEF domain
BJD12_03365	COG0745	RESPONSE REGULATOR receiver
BJD12_03375	COG2703	oxygen carrier activity
BJD12_03380	COG0477	Major facilitator Superfamily
BJD12_03395	COG0243	molybdopterin cofactor binding
BJD12_03400	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD12_03420	COG2733	membrane
BJD12_03425	COG0784	Response regulator, receiver
BJD12_03425	COG2205	protein histidine kinase activity
BJD12_03425	COG5002	protein histidine kinase activity
BJD12_03435	COG0477	Major facilitator Superfamily
BJD12_03450	COG2902	Dehydrogenase
BJD12_03460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_03465	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD12_03480	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD12_03480	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD12_03485	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD12_03490	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD12_03490	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD12_03570	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD12_03580	COG1862	Preprotein translocase
BJD12_03585	COG0343	queuine tRNA-ribosyltransferase activity
BJD12_03590	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD12_03630	COG3291	Pkd domain containing protein
BJD12_03640	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD12_03655	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD12_03660	COG0742	ribosomal rna small subunit methyltransferase
BJD12_03685	COG4206	TonB-dependent receptor
BJD12_03715	COG0531	amino acid
BJD12_03730	COG0006	proline dipeptidase activity
BJD12_03740	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD12_03755	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD12_03760	COG3938	Belongs to the proline racemase family
BJD12_03770	COG0552	protein localization to endoplasmic reticulum
BJD12_03795	COG4191	Histidine kinase
BJD12_03795	COG0784	Response regulator, receiver
BJD12_03840	COG1960	acyl-CoA dehydrogenase activity
BJD12_03850	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BJD12_03870	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD12_03880	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD12_03920	COG0438	transferase activity, transferring glycosyl groups
BJD12_03925	COG0438	transferase activity, transferring glycosyl groups
BJD12_03970	COG0776	regulation of translation
BJD12_03975	COG0072	phenylalanine-tRNA ligase activity
BJD12_03975	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD12_03980	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD12_03985	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BJD12_03990	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BJD12_03995	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BJD12_04000	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BJD12_04025	COG1082	Xylose isomerase domain protein TIM barrel
BJD12_04040	COG0366	Alpha amylase catalytic
BJD12_04045	COG2801	Transposase and inactivated derivatives
BJD12_04095	COG3702	type iv secretory pathway
BJD12_04115	COG2948	multi-organism process
BJD12_04135	COG3505	Type IV secretory pathway VirD4
BJD12_04150	COG0556	nucleotide-excision repair
BJD12_04200	COG3275	phosphorelay sensor kinase activity
BJD12_04205	COG1611	Belongs to the LOG family
BJD12_04215	COG2095	MarC family integral membrane protein
BJD12_04225	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD12_04265	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD12_04270	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD12_04275	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD12_04280	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BJD12_04285	COG0195	Participates in both transcription termination and antitermination
BJD12_04290	COG0779	Required for maturation of 30S ribosomal subunits
BJD12_04300	COG1007	ATP synthesis coupled electron transport
BJD12_04315	COG0713	ATP synthesis coupled electron transport
BJD12_04340	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BJD12_04345	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
BJD12_04350	COG0649	NAD binding
BJD12_04355	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD12_04365	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BJD12_04380	COG0149	triose-phosphate isomerase activity
BJD12_04385	COG4221	oxidoreductase activity
BJD12_04420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD12_04440	COG0133	tryptophan synthase activity
BJD12_04450	COG0135	phosphoribosylanthranilate isomerase activity
BJD12_04455	COG0101	tRNA pseudouridine synthase activity
BJD12_04470	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD12_04475	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD12_04480	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BJD12_04490	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD12_04500	COG0688	phosphatidylethanolamine metabolic process
BJD12_04510	COG0741	lytic transglycosylase activity
BJD12_04515	COG0433	COG0433 Predicted ATPase
BJD12_04525	COG0494	nUDIX hydrolase
BJD12_04555	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD12_04585	COG0717	Belongs to the dCTP deaminase family
BJD12_04595	COG0489	protein tyrosine kinase activity
BJD12_04615	COG3590	peptidase
BJD12_04620	COG3590	peptidase
BJD12_04640	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD12_04645	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD12_04650	COG2311	Membrane
BJD12_04655	COG1047	Peptidyl-prolyl cis-trans
BJD12_04660	COG0791	NLP P60 protein
BJD12_04665	COG0791	NLP P60 protein
BJD12_04710	COG2226	methyltransferase
BJD12_04715	COG1301	dicarboxylic acid transport
BJD12_04720	COG1785	Belongs to the alkaline phosphatase family
BJD12_04725	COG0037	tRNA processing
BJD12_04730	COG1722	exodeoxyribonuclease VII activity
BJD12_04735	COG0142	geranyltranstransferase activity
BJD12_04745	COG4104	PAAR repeat-containing protein
BJD12_04755	COG0312	modulator of DNA gyrase
BJD12_04760	COG3028	Belongs to the UPF0307 family
BJD12_04765	COG0312	modulator of DNA gyrase
BJD12_04780	COG1530	ribonuclease E activity
BJD12_04785	COG0424	maF-like protein
BJD12_04790	COG2968	Membrane
BJD12_04820	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BJD12_04835	COG0495	leucyl-tRNA aminoacylation
BJD12_04845	COG3118	belongs to the thioredoxin family
BJD12_04855	COG2155	Conserved Protein
BJD12_04910	COG1132	(ABC) transporter
BJD12_04920	COG0475	glutathione-regulated potassium exporter activity
BJD12_04930	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD12_04950	COG3706	GGDEF domain
BJD12_04955	COG1187	pseudouridine synthase activity
BJD12_04960	COG5001	Diguanylate cyclase
BJD12_04960	COG5002	protein histidine kinase activity
BJD12_04980	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD12_05010	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD12_05090	COG0667	Aldo Keto reductase
BJD12_05095	COG2814	Major facilitator Superfamily
BJD12_05100	COG0583	DNA-binding transcription factor activity
BJD12_05110	COG2207	Transcriptional regulator
BJD12_05125	COG0667	Aldo Keto reductase
BJD12_05130	COG1309	transcriptional regulator
BJD12_05135	COG1538	Outer membrane efflux protein
BJD12_05155	COG0735	belongs to the Fur family
BJD12_05185	COG4452	Inner membrane protein CreD
BJD12_05190	COG2205	protein histidine kinase activity
BJD12_05195	COG0745	RESPONSE REGULATOR receiver
BJD12_05200	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD12_05220	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD12_05230	COG0643	Histidine kinase
BJD12_05230	COG2198	Histidine kinase
BJD12_05240	COG0840	transmembrane signaling receptor activity
BJD12_05245	COG0835	chemotaxis
BJD12_05255	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD12_05270	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD12_05275	COG3590	peptidase
BJD12_05285	COG0588	phosphoglycerate mutase activity
BJD12_05290	COG1515	deoxyribonuclease V activity
BJD12_05305	COG1741	Belongs to the pirin family
BJD12_05320	COG1741	Belongs to the pirin family
BJD12_05325	COG1966	Carbon starvation protein
BJD12_05330	COG2879	small protein
BJD12_05370	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
BJD12_05375	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD12_05385	COG2080	2 iron, 2 sulfur cluster binding
BJD12_05390	COG0604	alcohol dehydrogenase
BJD12_05390	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_05390	COG3321	synthase
BJD12_05400	COG0629	single-stranded DNA binding
BJD12_05405	COG0142	geranyltranstransferase activity
BJD12_05415	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BJD12_05430	COG0527	aspartate kinase activity
BJD12_05435	COG0384	phenazine biosynthesis protein PhzF
BJD12_05440	COG0384	phenazine biosynthesis protein PhzF
BJD12_05450	COG1764	response to oxidative stress
BJD12_05460	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD12_05465	COG1678	Uncharacterized ACR, COG1678
BJD12_05470	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
BJD12_05475	COG0519	Catalyzes the synthesis of GMP from XMP
BJD12_05505	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD12_05520	COG4942	peptidase
BJD12_05540	COG0693	protein deglycase activity
BJD12_05550	COG1959	2 iron, 2 sulfur cluster binding
BJD12_05555	COG0719	Fe-S assembly protein
BJD12_05560	COG0396	ATPase activity
BJD12_05565	COG0719	Fe-S assembly protein
BJD12_05570	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD12_05575	COG0456	acetyltransferase
BJD12_05585	COG4774	siderophore transport
BJD12_05620	COG1477	protein flavinylation
BJD12_05635	COG1555	photosystem II stabilization
BJD12_05640	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD12_05655	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BJD12_05665	COG0628	permease
BJD12_05675	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD12_05690	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD12_05735	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD12_05745	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD12_05750	COG1137	ATPase activity
BJD12_05765	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD12_05775	COG1660	Displays ATPase and GTPase activities
BJD12_05785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD12_05790	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD12_05795	COG2239	Acts as a magnesium transporter
BJD12_05805	COG1294	oxidase, subunit
BJD12_05810	COG1271	oxidase subunit
BJD12_05815	COG1113	amino acid transport
BJD12_05835	COG2197	response regulator
BJD12_05840	COG0531	amino acid
BJD12_05900	COG2814	Major facilitator Superfamily
BJD12_05910	COG0754	glutathionylspermidine amidase activity
BJD12_05935	COG1842	Phage shock protein A
BJD12_05955	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD12_05960	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD12_05970	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD12_05975	COG2814	Major facilitator Superfamily
BJD12_05995	COG2353	YceI-like domain
BJD12_06010	COG1278	Cold shock
BJD12_06025	COG1760	l-serine dehydratase
BJD12_06035	COG0527	aspartate kinase activity
BJD12_06035	COG0460	homoserine dehydrogenase
BJD12_06040	COG0626	cystathionine gamma-synthase activity
BJD12_06045	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD12_06050	COG0739	heme binding
BJD12_06055	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BJD12_06060	COG1272	protein, Hemolysin III
BJD12_06065	COG2982	Protein involved in outer membrane biogenesis
BJD12_06075	COG0516	GMP reductase activity
BJD12_06075	COG0517	IMP dehydrogenase activity
BJD12_06080	COG0463	Glycosyl transferase, family 2
BJD12_06085	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD12_06090	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD12_06100	COG4771	TonB-dependent receptor
BJD12_06105	COG1309	transcriptional regulator
BJD12_06110	COG2267	carboxylic ester hydrolase activity
BJD12_06115	COG1960	acyl-CoA dehydrogenase activity
BJD12_06145	COG0509	glycine decarboxylation via glycine cleavage system
BJD12_06150	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BJD12_06160	COG0330	HflC and HflK could
BJD12_06170	COG3956	TIGRFAM MazG family protein
BJD12_06175	COG1218	3'(2'),5'-bisphosphate nucleotidase
BJD12_06180	COG0494	nUDIX hydrolase
BJD12_06190	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD12_06195	COG0837	glucose binding
BJD12_06210	COG1388	LysM domain
BJD12_06210	COG3858	chitin binding
BJD12_06230	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD12_06240	COG3537	Alpha-1,2-mannosidase
BJD12_06280	COG3142	Participates in the control of copper homeostasis
BJD12_06285	COG1446	asparaginase
BJD12_06290	COG2304	oxidoreductase activity
BJD12_06325	COG0840	transmembrane signaling receptor activity
BJD12_06330	COG0835	chemotaxis
BJD12_06345	COG0189	ligase activity
BJD12_06355	COG1397	ADP-ribosylglycohydrolase
BJD12_06365	COG1199	ATP-dependent helicase activity
BJD12_06375	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD12_06380	COG1216	Glycosyl transferase, family 2
BJD12_06390	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD12_06400	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BJD12_06405	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
BJD12_06410	COG0535	radical SAM domain protein
BJD12_06430	COG0837	glucose binding
BJD12_06440	COG1643	Atp-dependent helicase
BJD12_06445	COG0783	Belongs to the Dps family
BJD12_06450	COG0514	ATP-dependent DNA helicase (RecQ)
BJD12_06470	COG1187	pseudouridine synthase activity
BJD12_06480	COG0840	transmembrane signaling receptor activity
BJD12_06510	COG0602	queuosine metabolic process
BJD12_06520	COG2885	chlorophyll binding
BJD12_06525	COG0823	Involved in the tonB-independent uptake of proteins
BJD12_06535	COG0848	biopolymer transport protein
BJD12_06545	COG0824	Thioesterase
BJD12_06550	COG2255	four-way junction helicase activity
BJD12_06565	COG0632	four-way junction helicase activity
BJD12_06570	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
BJD12_06590	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BJD12_06610	COG0477	Major facilitator Superfamily
BJD12_06630	COG0640	Transcriptional regulator
BJD12_06635	COG0730	response to heat
BJD12_06655	COG2755	lipolytic protein G-D-S-L family
BJD12_06655	COG0657	acetylesterase activity
BJD12_06670	COG2951	lytic endotransglycosylase activity
BJD12_06680	COG0488	(ABC) transporter
BJD12_06715	COG4651	solute:proton antiporter activity
BJD12_06715	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD12_06725	COG4772	TonB-dependent receptor
BJD12_06735	COG4264	IucA IucC family
BJD12_06740	COG2814	Major facilitator Superfamily
BJD12_06745	COG4264	IucA IucC family
BJD12_06750	COG0019	diaminopimelate decarboxylase activity
BJD12_06770	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BJD12_06780	COG1492	cobalamin metabolic process
BJD12_06790	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD12_06810	COG4206	TonB-dependent receptor
BJD12_06820	COG0542	response to heat
BJD12_06870	COG3387	PFAM Glycoside hydrolase 15-related
BJD12_06885	COG0840	transmembrane signaling receptor activity
BJD12_06905	COG0564	pseudouridine synthase activity
BJD12_06910	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD12_06920	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD12_06920	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD12_06935	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD12_06970	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BJD12_06975	COG0237	dephospho-CoA kinase activity
BJD12_06985	COG0745	RESPONSE REGULATOR receiver
BJD12_06995	COG0189	ligase activity
BJD12_07200	COG0471	metal ion transport
BJD12_07200	COG3273	potassium ion transport
BJD12_07220	COG1970	mechanosensitive ion channel activity
BJD12_07230	COG1609	Transcriptional regulator
BJD12_07240	COG5297	Belongs to the glycosyl hydrolase family 6
BJD12_07250	COG3250	beta-galactosidase activity
BJD12_07255	COG4948	Mandelate Racemase Muconate Lactonizing
BJD12_07260	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD12_07265	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD12_07270	COG1115	amino acid carrier protein
BJD12_07285	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD12_07290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_07295	COG0529	Catalyzes the synthesis of activated sulfate
BJD12_07295	COG2895	sulfate adenylyltransferase (ATP) activity
BJD12_07305	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD12_07310	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD12_07335	COG0784	Response regulator, receiver
BJD12_07335	COG2198	Histidine kinase
BJD12_07335	COG2205	protein histidine kinase activity
BJD12_07350	COG1648	precorrin-2 dehydrogenase activity
BJD12_07350	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD12_07365	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
BJD12_07370	COG3588	fructose-bisphosphate aldolase
BJD12_07380	COG0469	pyruvate kinase activity
BJD12_07410	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD12_07430	COG3047	cAMP biosynthetic process
BJD12_07440	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD12_07440	COG3453	Protein conserved in bacteria
BJD12_07445	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD12_07450	COG4149	molybdate abc transporter
BJD12_07490	COG1376	ErfK ybiS ycfS ynhG family protein
BJD12_07495	COG0739	heme binding
BJD12_07505	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_07510	COG0583	DNA-binding transcription factor activity
BJD12_07515	COG4773	Receptor
BJD12_07520	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD12_07525	COG1301	dicarboxylic acid transport
BJD12_07535	COG2304	oxidoreductase activity
BJD12_07555	COG0714	Associated with various cellular activities
BJD12_07585	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD12_07605	COG0254	rRNA binding
BJD12_07615	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD12_07630	COG2721	sulfolactate sulfo-lyase activity
BJD12_07645	COG2271	Major facilitator Superfamily
BJD12_07660	COG0583	DNA-binding transcription factor activity
BJD12_07670	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD12_07675	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD12_07680	COG2390	Transcriptional regulator
BJD12_07690	COG3659	wide pore channel activity
BJD12_07710	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_07720	COG1758	RNA polymerase activity
BJD12_07730	COG1561	YicC-like family, N-terminal region
BJD12_07735	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD12_07745	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD12_07750	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD12_07765	COG0006	proline dipeptidase activity
BJD12_07780	COG0006	proline dipeptidase activity
BJD12_07805	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD12_07825	COG2912	Transglutaminase-like superfamily
BJD12_07830	COG1773	rubredoxin
BJD12_07835	COG0352	thiamine-phosphate diphosphorylase activity
BJD12_07920	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BJD12_08070	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BJD12_08085	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD12_08120	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD12_08125	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD12_08155	COG0671	phosphoesterase, PA-phosphatase related
BJD12_08160	COG3781	membrane
BJD12_08170	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD12_08175	COG0563	adenylate kinase activity
BJD12_08195	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
BJD12_08205	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD12_08225	COG3710	Transcriptional regulator
BJD12_08235	COG1506	peptidase
BJD12_08235	COG4946	Tricorn protease homolog
BJD12_08235	COG0823	Involved in the tonB-independent uptake of proteins
BJD12_08240	COG0840	transmembrane signaling receptor activity
BJD12_08245	COG0405	Gamma-glutamyltransferase
BJD12_08270	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BJD12_08280	COG0473	3-isopropylmalate dehydrogenase activity
BJD12_08285	COG2226	methyltransferase
BJD12_08290	COG0066	3-isopropylmalate dehydratase activity
BJD12_08315	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD12_08320	COG1538	Outer membrane efflux protein
BJD12_08325	COG1519	Transferase
BJD12_08330	COG1560	Kdo2-lipid A biosynthetic process
BJD12_08355	COG0280	phosphate acetyltransferase
BJD12_08355	COG0281	malic enzyme
BJD12_08370	COG4191	Histidine kinase
BJD12_08385	COG0667	Aldo Keto reductase
BJD12_08400	COG2197	response regulator
BJD12_08405	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD12_08410	COG0642	Histidine kinase
BJD12_08425	COG2851	Citrate transporter
BJD12_08430	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_08435	COG1609	Transcriptional regulator
BJD12_08440	COG2211	Major facilitator Superfamily
BJD12_08470	COG0436	Aminotransferase
BJD12_08485	COG0726	polysaccharide deacetylase
BJD12_08490	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD12_08505	COG3964	amidohydrolase
BJD12_08510	COG0402	S-adenosylhomocysteine deaminase activity
BJD12_08550	COG1307	EDD domain protein, DegV family
BJD12_08565	COG3791	Glutathione-dependent formaldehyde-activating
BJD12_08580	COG0583	DNA-binding transcription factor activity
BJD12_08595	COG0745	RESPONSE REGULATOR receiver
BJD12_08600	COG2205	protein histidine kinase activity
BJD12_08630	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD12_08645	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD12_08655	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD12_08660	COG1012	belongs to the aldehyde dehydrogenase family
BJD12_08665	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
BJD12_08715	COG1183	phosphatidylcholine synthase activity
BJD12_08740	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD12_08745	COG1127	ABC transporter
BJD12_08750	COG3218	ABC-type transport auxiliary lipoprotein component
BJD12_08750	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD12_08780	COG3754	Rhamnan synthesis protein F
BJD12_08795	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD12_08800	COG0662	Cupin 2, conserved barrel domain protein
BJD12_08800	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
BJD12_08830	COG2086	electron transfer activity
BJD12_08845	COG0463	Glycosyl transferase, family 2
BJD12_08870	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
BJD12_08910	COG0626	cystathionine gamma-synthase activity
BJD12_08940	COG0625	glutathione transferase activity
BJD12_08955	COG0513	Belongs to the DEAD box helicase family
BJD12_08960	COG0720	synthase
BJD12_08975	COG1956	GAF domain-containing protein
BJD12_08990	COG0546	phosphoglycolate phosphatase activity
BJD12_09000	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD12_09025	COG0339	signal peptide processing
BJD12_09075	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD12_09080	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_09085	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD12_09085	COG1136	(ABC) transporter
BJD12_09090	COG0577	efflux transmembrane transporter activity
BJD12_09105	COG2204	response regulator
BJD12_09110	COG4191	Histidine kinase
BJD12_09120	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
BJD12_09135	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD12_09145	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD12_09155	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD12_09160	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD12_09170	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD12_09185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD12_09195	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD12_09225	COG2011	ABC-type metal ion transport system permease component
BJD12_09230	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD12_09235	COG0697	spore germination
BJD12_09240	COG1666	GTP binding
BJD12_09270	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD12_09275	COG1187	pseudouridine synthase activity
BJD12_09280	COG2813	Specifically methylates the guanine in position
BJD12_09320	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD12_09325	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD12_09330	COG1522	sequence-specific DNA binding
BJD12_09380	COG0842	Transport permease protein
BJD12_09385	COG1131	(ABC) transporter
BJD12_09390	COG0025	NhaP-type Na H and K H
BJD12_09410	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
BJD12_09415	COG1573	uracil-dna glycosylase
BJD12_09430	COG3384	dioxygenase
BJD12_09440	COG0583	DNA-binding transcription factor activity
BJD12_09460	COG0667	Aldo Keto reductase
BJD12_09470	COG3590	peptidase
BJD12_09490	COG0531	amino acid
BJD12_09505	COG3275	phosphorelay sensor kinase activity
BJD12_09520	COG3685	Protein conserved in bacteria
BJD12_09525	COG3546	catalase activity
BJD12_09555	COG2204	response regulator
BJD12_09565	COG1271	oxidase subunit
BJD12_09570	COG1294	oxidase, subunit
BJD12_09585	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_09595	COG1063	alcohol dehydrogenase
BJD12_09620	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD12_09680	COG0251	oxidation-reduction process
BJD12_09710	COG0038	chloride channel
BJD12_09720	COG0024	Methionine aminopeptidase
BJD12_09730	COG1733	regulation of RNA biosynthetic process
BJD12_09740	COG1999	signal sequence binding
BJD12_09750	COG1335	isochorismatase
BJD12_09805	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD12_09810	COG1490	D-aminoacyl-tRNA deacylase activity
BJD12_09815	COG1560	Kdo2-lipid A biosynthetic process
BJD12_09820	COG1247	-acetyltransferase
BJD12_09865	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD12_09870	COG0242	peptide deformylase activity
BJD12_09875	COG1652	LysM domain
BJD12_09880	COG0758	DNA mediated transformation
BJD12_09900	COG1754	DNA topoisomerase type I activity
BJD12_09900	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD12_09905	COG0009	L-threonylcarbamoyladenylate synthase
BJD12_09920	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_09930	COG0616	signal peptide processing
BJD12_09935	COG0534	Mate efflux family protein
BJD12_09955	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD12_09960	COG0625	glutathione transferase activity
BJD12_09975	COG1252	NADH dehydrogenase
BJD12_09980	COG2860	membrane
BJD12_09985	COG2860	membrane
BJD12_09990	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD12_10000	COG3437	response regulator, receiver
BJD12_10005	COG2177	Part of the ABC transporter FtsEX involved in
BJD12_10010	COG2884	Cell division ATP-binding protein ftsE
BJD12_10020	COG3118	belongs to the thioredoxin family
BJD12_10025	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BJD12_10035	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
BJD12_10040	COG0583	DNA-binding transcription factor activity
BJD12_10060	COG1652	LysM domain
BJD12_10065	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD12_10065	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BJD12_10070	COG1473	amidohydrolase
BJD12_10075	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_10100	COG5383	Protein conserved in bacteria
BJD12_10140	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
BJD12_10145	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD12_10155	COG4948	Mandelate Racemase Muconate Lactonizing
BJD12_10165	COG0531	amino acid
BJD12_10180	COG4682	membrane
BJD12_10185	COG2133	pyrroloquinoline quinone binding
BJD12_10195	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD12_10200	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD12_10205	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD12_10210	COG1610	YqeY-like protein
BJD12_10215	COG1295	ribonuclease BN
BJD12_10220	COG0358	DNA primase activity
BJD12_10275	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD12_10290	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD12_10335	COG0739	heme binding
BJD12_10350	COG2211	Major facilitator Superfamily
BJD12_10360	COG0708	Exodeoxyribonuclease III
BJD12_10375	COG1192	Involved in chromosome partitioning
BJD12_10380	COG1475	DNA binding
BJD12_10400	COG0463	Glycosyl transferase, family 2
BJD12_10420	COG0756	dUTP diphosphatase activity
BJD12_10425	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BJD12_10450	COG4221	oxidoreductase activity
BJD12_10455	COG2755	lipolytic protein G-D-S-L family
BJD12_10455	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BJD12_10475	COG1166	arginine decarboxylase activity
BJD12_10480	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BJD12_10500	COG3291	Pkd domain containing protein
BJD12_10500	COG3525	Glycosyl hydrolase, family 20, catalytic domain
BJD12_10510	COG2960	long-chain fatty acid transporting porin activity
BJD12_10515	COG0606	chelatase, subunit chli
BJD12_10530	COG4943	cyclic-guanylate-specific phosphodiesterase activity
BJD12_10560	COG1690	Belongs to the RtcB family
BJD12_10595	COG1090	epimerase
BJD12_10600	COG0745	RESPONSE REGULATOR receiver
BJD12_10605	COG0642	Histidine kinase
BJD12_10625	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD12_10645	COG0628	permease
BJD12_10655	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD12_10665	COG0753	catalase activity
BJD12_10680	COG2197	response regulator
BJD12_10690	COG4585	Histidine kinase
BJD12_10695	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_10700	COG1136	(ABC) transporter
BJD12_10725	COG0697	spore germination
BJD12_10745	COG0180	Tryptophanyl-tRNA synthetase
BJD12_10750	COG3237	CsbD-like
BJD12_10790	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD12_10805	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BJD12_10810	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
BJD12_10810	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
BJD12_10835	COG2205	protein histidine kinase activity
BJD12_10840	COG0745	RESPONSE REGULATOR receiver
BJD12_10850	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD12_10880	COG1199	ATP-dependent helicase activity
BJD12_10905	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD12_10950	COG0625	glutathione transferase activity
BJD12_10985	COG4555	ABC transporter
BJD12_10995	COG1476	TRANSCRIPTIONal
BJD12_11020	COG0633	Ferredoxin
BJD12_11020	COG0543	2 iron, 2 sulfur cluster binding
BJD12_11025	COG1131	(ABC) transporter
BJD12_11030	COG0842	Transport permease protein
BJD12_11035	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD12_11045	COG1607	acyl-coa hydrolase
BJD12_11065	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD12_11070	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD12_11085	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD12_11085	COG1042	CoA-binding domain protein
BJD12_11085	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD12_11090	COG2239	Acts as a magnesium transporter
BJD12_11100	COG0475	glutathione-regulated potassium exporter activity
BJD12_11100	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD12_11105	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD12_11110	COG3387	PFAM Glycoside hydrolase 15-related
BJD12_11125	COG3100	YcgL domain-containing protein
BJD12_11130	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD12_11150	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_11175	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD12_11190	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD12_11240	COG0408	coproporphyrinogen oxidase activity
BJD12_11275	COG2815	serine threonine protein kinase
BJD12_11275	COG0515	serine threonine protein kinase
BJD12_11280	COG0631	protein serine/threonine phosphatase activity
BJD12_11310	COG0667	Aldo Keto reductase
BJD12_11315	COG0583	DNA-binding transcription factor activity
BJD12_11335	COG3501	Rhs element vgr protein
BJD12_11460	COG0210	DNA helicase
BJD12_11475	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD12_11480	COG0583	DNA-binding transcription factor activity
BJD12_11485	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD12_11495	COG2159	amidohydrolase
BJD12_11500	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BJD12_11505	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BJD12_11540	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD12_11550	COG2091	lysine biosynthetic process via aminoadipic acid
BJD12_11575	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD12_11580	COG3162	membrane
BJD12_11620	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD12_11635	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_11640	COG0179	Fumarylacetoacetate (FAA) hydrolase
BJD12_11645	COG4948	Mandelate Racemase Muconate Lactonizing
BJD12_11650	COG3254	rhamnose metabolic process
BJD12_11655	COG0738	Major facilitator superfamily
BJD12_11660	COG1414	Transcriptional regulator
BJD12_11670	COG0784	Response regulator, receiver
BJD12_11670	COG2205	protein histidine kinase activity
BJD12_11685	COG3459	Glycosyltransferase 36 associated
BJD12_11690	COG2211	Major facilitator Superfamily
BJD12_11695	COG3265	gluconokinase activity
BJD12_11700	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD12_11720	COG2911	Protein conserved in bacteria
BJD12_11725	COG0729	surface antigen
BJD12_11730	COG4771	TonB-dependent receptor
BJD12_11735	COG0457	Tetratricopeptide repeat
BJD12_11760	COG0519	Catalyzes the synthesis of GMP from XMP
BJD12_11760	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD12_11775	COG0805	protein transport
BJD12_11785	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD12_11795	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD12_11815	COG2974	May be involved in recombination
BJD12_11820	COG0037	tRNA processing
BJD12_11830	COG2115	Belongs to the xylose isomerase family
BJD12_11840	COG3661	Belongs to the glycosyl hydrolase 67 family
BJD12_11850	COG4948	Mandelate Racemase Muconate Lactonizing
BJD12_11860	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD12_11865	COG0246	Mannitol dehydrogenase
BJD12_11895	COG3386	PFAM SMP-30 Gluconolaconase
BJD12_11905	COG3250	beta-galactosidase activity
BJD12_11910	COG1904	glucuronate isomerase
BJD12_11915	COG3693	PFAM glycoside hydrolase, family 10
BJD12_11930	COG2211	Major facilitator Superfamily
BJD12_11970	COG2937	Belongs to the GPAT DAPAT family
BJD12_12005	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
BJD12_12010	COG3132	Protein of unknown function, DUF480
BJD12_12025	COG0210	DNA helicase
BJD12_12030	COG1435	thymidine kinase activity
BJD12_12040	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
BJD12_12050	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD12_12080	COG3135	benzoate transporter
BJD12_12100	COG0676	glucose-6-phosphate 1-epimerase activity
BJD12_12110	COG3012	SEC-C Motif Domain Protein
BJD12_12115	COG0730	response to heat
BJD12_12135	COG0302	gtp cyclohydrolase
BJD12_12150	COG1566	PFAM secretion protein HlyD family protein
BJD12_12160	COG1289	transmembrane transporter activity
BJD12_12165	COG0477	Major facilitator Superfamily
BJD12_12175	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD12_12235	COG0564	pseudouridine synthase activity
BJD12_12285	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BJD12_12290	COG1074	ATP-dependent DNA helicase activity
BJD12_12295	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD12_12335	COG1127	ABC transporter
BJD12_12340	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD12_12345	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD12_12360	COG2853	Lipoprotein
BJD12_12370	COG0386	Belongs to the glutathione peroxidase family
BJD12_12380	COG1322	Protein conserved in bacteria
BJD12_12385	COG0604	alcohol dehydrogenase
BJD12_12390	COG0583	DNA-binding transcription factor activity
BJD12_12400	COG0625	glutathione transferase activity
BJD12_12410	COG0531	amino acid
BJD12_12415	COG3537	Alpha-1,2-mannosidase
BJD12_12420	COG4206	TonB-dependent receptor
BJD12_12430	COG3706	GGDEF domain
BJD12_12435	COG1929	Belongs to the glycerate kinase type-1 family
BJD12_12455	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD12_12465	COG0861	Integral membrane protein TerC family
BJD12_12480	COG0584	glycerophosphoryl diester phosphodiesterase
BJD12_12495	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD12_12505	COG0726	polysaccharide deacetylase
BJD12_12510	COG0706	membrane insertase activity
BJD12_12520	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BJD12_12530	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BJD12_12540	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD12_12545	COG0187	DNA topoisomerase II activity
BJD12_12555	COG0501	Belongs to the peptidase M48B family
BJD12_12600	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD12_12610	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD12_12645	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD12_12650	COG0793	Belongs to the peptidase S41A family
BJD12_12660	COG4942	peptidase
BJD12_12670	COG2234	aminopeptidase activity
BJD12_12680	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD12_12685	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD12_12690	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD12_12695	COG1064	alcohol dehydrogenase
BJD12_12700	COG0493	'glutamate synthase
BJD12_12705	COG0069	glutamate synthase activity
BJD12_12705	COG0070	glutamate synthase
BJD12_12705	COG0067	glutamate synthase
BJD12_12750	COG0583	DNA-binding transcription factor activity
BJD12_12825	COG1111	helicase
BJD12_12825	COG1205	dead DEAH box helicase
BJD12_12830	COG1272	protein, Hemolysin III
BJD12_12840	COG0625	glutathione transferase activity
BJD12_12850	COG3590	peptidase
BJD12_12855	COG0583	DNA-binding transcription factor activity
BJD12_12860	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_12880	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD12_12890	COG1733	regulation of RNA biosynthetic process
BJD12_12925	COG3237	CsbD-like
BJD12_12970	COG1309	transcriptional regulator
BJD12_12990	COG0628	permease
BJD12_13005	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD12_13010	COG0477	Major facilitator Superfamily
BJD12_13055	COG0714	Associated with various cellular activities
BJD12_13090	COG0596	Alpha beta hydrolase
BJD12_13105	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD12_13115	COG4772	TonB-dependent receptor
BJD12_13135	COG1012	belongs to the aldehyde dehydrogenase family
BJD12_13180	COG1755	Isoprenylcysteine carboxyl methyltransferase
BJD12_13185	COG4585	Histidine kinase
BJD12_13190	COG2197	response regulator
BJD12_13200	COG3710	Transcriptional regulator
BJD12_13205	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD12_13215	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD12_13315	COG0366	Alpha amylase catalytic
BJD12_13320	COG0366	Alpha amylase catalytic
BJD12_13360	COG2755	lipolytic protein G-D-S-L family
BJD12_13370	COG2755	lipolytic protein G-D-S-L family
BJD12_13370	COG0657	acetylesterase activity
BJD12_13380	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD12_13395	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD12_13400	COG1609	Transcriptional regulator
BJD12_13410	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BJD12_13415	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_13425	COG2755	lipolytic protein G-D-S-L family
BJD12_13435	COG3186	Phenylalanine-4-hydroxylase
BJD12_13440	COG1522	sequence-specific DNA binding
BJD12_13455	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD12_13465	COG1119	ATPase activity
BJD12_13480	COG1125	glycine betaine transport
BJD12_13480	COG0517	IMP dehydrogenase activity
BJD12_13495	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD12_13500	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
BJD12_13525	COG0489	protein tyrosine kinase activity
BJD12_13530	COG2062	phosphohistidine phosphatase, SixA
BJD12_13535	COG2353	YceI-like domain
BJD12_13540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD12_13550	COG2050	protein possibly involved in aromatic compounds catabolism
BJD12_13570	COG1881	PFAM PEBP family protein
BJD12_13590	COG0174	glutamine synthetase
BJD12_13595	COG0347	Belongs to the P(II) protein family
BJD12_13600	COG0004	ammonium transporteR
BJD12_13605	COG3852	Histidine kinase
BJD12_13610	COG2204	response regulator
BJD12_13615	COG2032	superoxide dismutase activity
BJD12_13620	COG2032	superoxide dismutase activity
BJD12_13635	COG0183	Belongs to the thiolase family
BJD12_13675	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD12_13680	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD12_13685	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD12_13695	COG0028	Belongs to the TPP enzyme family
BJD12_13700	COG2205	protein histidine kinase activity
BJD12_13725	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD12_13740	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD12_13745	COG3177	Filamentation induced by cAMP protein fic
BJD12_13750	COG0596	Alpha beta hydrolase
BJD12_13760	COG0318	PFAM AMP-dependent synthetase and ligase
BJD12_13765	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD12_13780	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD12_13790	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD12_13800	COG0564	pseudouridine synthase activity
BJD12_13830	COG0339	signal peptide processing
BJD12_13835	COG0339	signal peptide processing
BJD12_13865	COG0475	glutathione-regulated potassium exporter activity
BJD12_13875	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD12_13880	COG2224	Isocitrate lyase
BJD12_13915	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD12_13920	COG1960	acyl-CoA dehydrogenase activity
BJD12_13980	COG0523	cobalamin synthesis protein
BJD12_13995	COG0697	spore germination
BJD12_14005	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD12_14010	COG1846	Transcriptional regulator
BJD12_14015	COG1764	response to oxidative stress
BJD12_14025	COG2267	carboxylic ester hydrolase activity
BJD12_14045	COG0656	L-ascorbic acid biosynthetic process
BJD12_14050	COG2130	NADP-dependent
BJD12_14065	COG1187	pseudouridine synthase activity
BJD12_14080	COG1643	Atp-dependent helicase
BJD12_14085	COG0840	transmembrane signaling receptor activity
BJD12_14090	COG4807	Protein conserved in bacteria
BJD12_14095	COG2351	hydroxyisourate hydrolase activity
BJD12_14100	COG2072	flavoprotein involved in K transport
BJD12_14120	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD12_14160	COG1957	nucleoside hydrolase
BJD12_14170	COG2252	PERMEase
BJD12_14185	COG0583	DNA-binding transcription factor activity
BJD12_14190	COG0084	hydrolase, TatD family'
BJD12_14205	COG0583	DNA-binding transcription factor activity
BJD12_14210	COG2814	Major facilitator Superfamily
BJD12_14225	COG4221	oxidoreductase activity
BJD12_14240	COG1902	pentaerythritol trinitrate reductase activity
BJD12_14265	COG0300	oxidoreductase activity
BJD12_14280	COG0583	DNA-binding transcription factor activity
BJD12_14295	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BJD12_14315	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_14320	COG0604	alcohol dehydrogenase
BJD12_14340	COG0702	epimerase
BJD12_14345	COG1733	regulation of RNA biosynthetic process
BJD12_14455	COG0129	dihydroxy-acid dehydratase activity
BJD12_14465	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD12_14520	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD12_14525	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD12_14555	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BJD12_14560	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BJD12_14570	COG3485	protocatechuate 3,4-dioxygenase
BJD12_14575	COG3485	protocatechuate 3,4-dioxygenase
BJD12_14585	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BJD12_14590	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD12_14600	COG1414	Transcriptional regulator
BJD12_14620	COG0445	tRNA wobble uridine modification
BJD12_14630	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BJD12_14655	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_14675	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD12_14680	COG1040	competence protein
BJD12_14705	COG0840	transmembrane signaling receptor activity
BJD12_14720	COG1511	domain protein
BJD12_14720	COG3264	Mechanosensitive ion channel
BJD12_14725	COG1368	sulfuric ester hydrolase activity
BJD12_14735	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD12_14740	COG2354	Protein conserved in bacteria
BJD12_14745	COG3706	GGDEF domain
BJD12_14745	COG0745	RESPONSE REGULATOR receiver
BJD12_14750	COG0297	glycogen (starch) synthase activity
BJD12_14760	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD12_14785	COG0702	epimerase
BJD12_14790	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_14825	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD12_14835	COG4221	oxidoreductase activity
BJD12_14850	COG0513	Belongs to the DEAD box helicase family
BJD12_14865	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD12_14880	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BJD12_14895	COG3104	oligopeptide transport
BJD12_14915	COG2852	Protein conserved in bacteria
BJD12_14935	COG1320	monovalent cation:proton antiporter activity
BJD12_14940	COG2212	antiporter activity
BJD12_14950	COG0651	ATP synthesis coupled electron transport
BJD12_14955	COG1006	Multisubunit Na H antiporter MnhC subunit
BJD12_14960	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BJD12_14960	COG2111	Na H antiporter
BJD12_14995	COG0484	heat shock protein binding
BJD12_15015	COG0456	acetyltransferase
BJD12_15020	COG1597	lipid kinase activity
BJD12_15055	COG0134	indole-3-glycerol-phosphate synthase activity
BJD12_15065	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD12_15080	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
BJD12_15085	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BJD12_15125	COG0745	RESPONSE REGULATOR receiver
BJD12_15145	COG0316	Belongs to the HesB IscA family
BJD12_15150	COG2816	NAD+ diphosphatase activity
BJD12_15155	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
BJD12_15180	COG2814	Major facilitator Superfamily
BJD12_15185	COG1289	transmembrane transporter activity
BJD12_15190	COG0151	Belongs to the GarS family
BJD12_15205	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD12_15210	COG2267	carboxylic ester hydrolase activity
BJD12_15215	COG2453	phosphatase
BJD12_15215	COG0671	phosphoesterase, PA-phosphatase related
BJD12_15240	COG4589	Belongs to the CDS family
BJD12_15250	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD12_15270	COG2264	protein methyltransferase activity
BJD12_15285	COG0439	Biotin carboxylase
BJD12_15295	COG0511	ligase activity, forming carbon-carbon bonds
BJD12_15300	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD12_15310	COG1324	tolerance protein
BJD12_15315	COG2356	endonuclease I
BJD12_15320	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD12_15345	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD12_15365	COG3386	PFAM SMP-30 Gluconolaconase
BJD12_15375	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BJD12_15420	COG0778	Nitroreductase
BJD12_15425	COG2353	YceI-like domain
BJD12_15445	COG3052	prosthetic group binding
BJD12_15465	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
BJD12_15480	COG1802	Transcriptional regulator
BJD12_15555	COG2963	transposase activity
BJD12_15675	COG0435	Glutathione S-transferase
BJD12_15720	COG2409	Drug exporters of the RND superfamily
BJD12_15745	COG3706	GGDEF domain
BJD12_15750	COG1959	2 iron, 2 sulfur cluster binding
BJD12_15755	COG3634	alkyl hydroperoxide reductase activity
BJD12_15780	COG0697	spore germination
BJD12_15795	COG1113	amino acid transport
BJD12_15800	COG0598	Magnesium transport protein CorA
BJD12_15865	COG0840	transmembrane signaling receptor activity
BJD12_15870	COG5297	Belongs to the glycosyl hydrolase family 6
BJD12_15870	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
BJD12_15875	COG0659	secondary active sulfate transmembrane transporter activity
BJD12_15880	COG3706	GGDEF domain
BJD12_15920	COG2943	transferase activity, transferring hexosyl groups
BJD12_15930	COG3275	phosphorelay sensor kinase activity
BJD12_15940	COG0181	hydroxymethylbilane synthase activity
BJD12_15970	COG1505	serine-type exopeptidase activity
BJD12_16000	COG2832	Protein of unknown function (DUF454)
BJD12_16010	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD12_16020	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD12_16030	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD12_16035	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD12_16050	COG2153	protein acetylation
BJD12_16065	COG2226	methyltransferase
BJD12_16070	COG5001	Diguanylate cyclase
BJD12_16070	COG3300	MHYT domain
BJD12_16075	COG0308	aminopeptidase N
BJD12_16110	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD12_16120	COG3284	Transcriptional regulator
BJD12_16130	COG1077	Cell shape determining protein MreB Mrl
BJD12_16135	COG1792	Involved in formation and maintenance of cell shape
BJD12_16150	COG0772	Belongs to the SEDS family
BJD12_16160	COG2951	lytic endotransglycosylase activity
BJD12_16165	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD12_16170	COG1686	Belongs to the peptidase S11 family
BJD12_16185	COG0321	lipoyl(octanoyl) transferase activity
BJD12_16190	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD12_16205	COG0583	DNA-binding transcription factor activity
BJD12_16215	COG1056	cytidyltransferase-related domain
BJD12_16215	COG1051	belongs to the nudix hydrolase family
BJD12_16250	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
BJD12_16255	COG0673	inositol 2-dehydrogenase activity
BJD12_16260	COG2823	Periplasmic or secreted lipoprotein
BJD12_16265	COG4251	negative regulation of phosphorylation
BJD12_16270	COG0784	Response regulator, receiver
BJD12_16275	COG4191	Histidine kinase
BJD12_16280	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD12_16285	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_16340	COG2165	general secretion pathway protein
BJD12_16355	COG4795	General secretion pathway protein
BJD12_16360	COG3156	type II secretion system protein K
BJD12_16390	COG1609	Transcriptional regulator
BJD12_16395	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD12_16400	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD12_16415	COG0617	tRNA 3'-terminal CCA addition
BJD12_16430	COG0525	valine-tRNA ligase activity
BJD12_16445	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD12_16455	COG0795	lipopolysaccharide-transporting ATPase activity
BJD12_16470	COG4974	Belongs to the 'phage' integrase family
BJD12_16475	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD12_16485	COG0047	phosphoribosylformylglycinamidine synthase activity
BJD12_16485	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BJD12_16495	COG5295	Hep Hag repeat protein
BJD12_16500	COG1404	Belongs to the peptidase S8 family
BJD12_16505	COG1404	Belongs to the peptidase S8 family
BJD12_16510	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD12_16515	COG1459	type II secretion system
BJD12_16520	COG2165	general secretion pathway protein
BJD12_16525	COG4970	Tfp pilus assembly protein FimT
BJD12_16530	COG2165	general secretion pathway protein
BJD12_16535	COG4795	General secretion pathway protein
BJD12_16540	COG3156	type II secretion system protein K
BJD12_16545	COG3166	PFAM Fimbrial assembly family protein
BJD12_16560	COG1450	Type ii and iii secretion system protein
BJD12_16580	COG2188	Transcriptional regulator
BJD12_16625	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BJD12_16640	COG1215	transferase activity, transferring glycosyl groups
BJD12_16645	COG1215	transferase activity, transferring glycosyl groups
BJD12_16650	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BJD12_16655	COG0457	Tetratricopeptide repeat
BJD12_16675	COG0242	peptide deformylase activity
BJD12_16680	COG0488	(ABC) transporter
BJD12_16690	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD12_16705	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD12_16705	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD12_16765	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BJD12_16770	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BJD12_16780	COG2205	protein histidine kinase activity
BJD12_16785	COG0745	RESPONSE REGULATOR receiver
BJD12_16790	COG0823	Involved in the tonB-independent uptake of proteins
BJD12_16790	COG1506	peptidase
BJD12_16790	COG4946	Tricorn protease homolog
BJD12_16795	COG0277	FAD linked oxidase domain protein
BJD12_16800	COG1988	membrane-bound metal-dependent
BJD12_16850	COG3116	cell division
BJD12_16860	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BJD12_16865	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD12_16870	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD12_16885	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD12_16890	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD12_16895	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD12_16920	COG0739	heme binding
BJD12_16940	COG0494	nUDIX hydrolase
BJD12_16955	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD12_16965	COG3321	synthase
BJD12_16965	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_16965	COG0604	alcohol dehydrogenase
BJD12_16995	COG0366	Alpha amylase catalytic
BJD12_17025	COG2226	methyltransferase
BJD12_17040	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD12_17060	COG2885	chlorophyll binding
BJD12_17080	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD12_17090	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BJD12_17100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD12_17105	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD12_17110	COG0667	Aldo Keto reductase
BJD12_17120	COG4771	TonB-dependent receptor
BJD12_17140	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD12_17145	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BJD12_17165	COG4181	ATPase activity
BJD12_17180	COG0642	Histidine kinase
BJD12_17190	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD12_17200	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BJD12_17210	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
BJD12_17230	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD12_17235	COG2967	ApaG domain
BJD12_17240	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD12_17245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD12_17255	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
BJD12_17265	COG2096	Adenosyltransferase
BJD12_17275	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD12_17280	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD12_17310	COG3384	dioxygenase
BJD12_17315	COG0583	DNA-binding transcription factor activity
BJD12_17320	COG0318	PFAM AMP-dependent synthetase and ligase
BJD12_17330	COG1024	Enoyl-CoA hydratase
BJD12_17380	COG0697	spore germination
BJD12_17385	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD12_17400	COG0745	RESPONSE REGULATOR receiver
BJD12_17400	COG3706	GGDEF domain
BJD12_17405	COG5002	protein histidine kinase activity
BJD12_17405	COG0784	Response regulator, receiver
BJD12_17405	COG2205	protein histidine kinase activity
BJD12_17410	COG2197	response regulator
BJD12_17420	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD12_17430	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD12_17435	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD12_17440	COG0583	DNA-binding transcription factor activity
BJD12_17445	COG3634	alkyl hydroperoxide reductase activity
BJD12_17455	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD12_17480	COG0778	Nitroreductase
BJD12_17505	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD12_17525	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD12_17530	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD12_17550	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD12_17555	COG1404	Belongs to the peptidase S8 family
BJD12_17560	COG1404	Belongs to the peptidase S8 family
BJD12_17565	COG1404	Belongs to the peptidase S8 family
BJD12_17575	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BJD12_17595	COG1295	ribonuclease BN
BJD12_17600	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD12_17605	COG1254	Belongs to the acylphosphatase family
BJD12_17620	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD12_17645	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BJD12_17650	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD12_17660	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD12_17665	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD12_17670	COG0193	aminoacyl-tRNA hydrolase activity
BJD12_17675	COG0012	GTP binding
BJD12_17680	COG0582	viral genome integration into host DNA
BJD12_17735	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD12_17745	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD12_17750	COG0250	Participates in transcription elongation, termination and antitermination
BJD12_17755	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BJD12_17760	COG0081	regulation of translation
BJD12_17765	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD12_17770	COG0222	ribosome binding
BJD12_17780	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD12_17795	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD12_17800	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD12_17805	COG0051	transcription antitermination factor activity, RNA binding
BJD12_17825	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD12_17845	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD12_17850	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD12_17855	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD12_17860	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BJD12_17865	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD12_17875	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD12_17895	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BJD12_17900	COG1841	ribosomal large subunit assembly
BJD12_17905	COG0200	Binds to the 23S rRNA
BJD12_17910	COG0201	protein transport
BJD12_17915	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BJD12_17920	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD12_17925	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BJD12_17930	COG0202	RNA polymerase activity
BJD12_17935	COG0203	ribosomal protein L17
BJD12_17940	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BJD12_17950	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
BJD12_17960	COG0154	amidase activity
BJD12_17975	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD12_17980	COG0039	L-malate dehydrogenase activity
BJD12_17985	COG0625	glutathione transferase activity
BJD12_18000	COG1902	pentaerythritol trinitrate reductase activity
BJD12_18000	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD12_18005	COG0604	alcohol dehydrogenase
BJD12_18015	COG2885	chlorophyll binding
BJD12_18040	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BJD12_18045	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BJD12_18050	COG4208	sulfate ABC transporter
BJD12_18055	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BJD12_18070	COG1063	alcohol dehydrogenase
BJD12_18090	COG0406	alpha-ribazole phosphatase activity
BJD12_18100	COG0285	dihydrofolate synthase activity
BJD12_18120	COG2833	Protein of unknown function (DUF455)
BJD12_18125	COG3291	Pkd domain containing protein
BJD12_18135	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD12_18140	COG0671	phosphoesterase, PA-phosphatase related
BJD12_18155	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD12_18170	COG4783	chaperone-mediated protein folding
BJD12_18185	COG0473	3-isopropylmalate dehydrogenase activity
BJD12_18505	COG3852	Histidine kinase
BJD12_18515	COG0544	peptidyl-prolyl cis-trans isomerase activity
BJD12_18520	COG0740	serine-type endopeptidase activity
BJD12_18525	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD12_18555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD12_18565	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD12_18580	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD12_18585	COG0631	protein serine/threonine phosphatase activity
BJD12_18600	COG0859	PFAM glycosyl transferase family 9
BJD12_18610	COG1234	tRNA 3'-trailer cleavage
BJD12_18615	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BJD12_18625	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD12_18630	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD12_18635	COG0314	molybdopterin synthase activity
BJD12_18645	COG0582	viral genome integration into host DNA
BJD12_18675	COG2003	Belongs to the UPF0758 family
BJD12_18715	COG3039	Transposase
BJD12_18790	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD12_18800	COG0537	adenosine 5'-monophosphoramidase activity
BJD12_18820	COG0714	Associated with various cellular activities
BJD12_18840	COG0424	maF-like protein
BJD12_18845	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD12_18850	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD12_18855	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD12_18865	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_18870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD12_18880	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD12_18885	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD12_18910	COG3829	transcription factor binding
BJD12_18955	COG2373	Large extracellular alpha-helical protein
BJD12_19000	COG4953	penicillin-binding protein 1C
BJD12_19010	COG0678	peroxiredoxin activity
BJD12_19030	COG0330	HflC and HflK could
BJD12_19035	COG0330	HflC and HflK could
BJD12_19040	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD12_19110	COG0732	type I restriction modification DNA specificity domain
BJD12_19135	COG1309	transcriptional regulator
BJD12_19140	COG0406	alpha-ribazole phosphatase activity
BJD12_19140	COG0328	RNA-DNA hybrid ribonuclease activity
BJD12_19145	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD12_19155	COG3387	PFAM Glycoside hydrolase 15-related
BJD12_19160	COG1028	Short-chain dehydrogenase reductase Sdr
BJD12_19170	COG3537	Alpha-1,2-mannosidase
BJD12_19230	COG1064	alcohol dehydrogenase
BJD12_19235	COG1309	transcriptional regulator
BJD12_19240	COG1529	Aldehyde oxidase and xanthine dehydrogenase
BJD12_19245	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
BJD12_19250	COG2080	2 iron, 2 sulfur cluster binding
BJD12_19275	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD12_19295	COG0587	DNA-directed DNA polymerase activity
BJD12_19310	COG1297	OPT oligopeptide transporter protein
BJD12_19320	COG1506	peptidase
BJD12_19320	COG0823	Involved in the tonB-independent uptake of proteins
BJD12_19335	COG1917	Cupin 2, conserved barrel domain protein
BJD12_19335	COG2207	Transcriptional regulator
BJD12_19345	COG0753	catalase activity
BJD12_19350	COG0656	L-ascorbic acid biosynthetic process
BJD12_19355	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD12_19360	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD12_19360	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD12_19365	COG2814	Major facilitator Superfamily
BJD12_19385	COG2194	sulfuric ester hydrolase activity
BJD12_19400	COG0745	RESPONSE REGULATOR receiver
BJD12_19405	COG5002	protein histidine kinase activity
BJD12_19415	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD12_19420	COG2894	cell division
BJD12_19435	COG4585	Histidine kinase
BJD12_19440	COG2197	response regulator
BJD12_19455	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD12_19485	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD12_19505	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD12_19525	COG1946	Acyl-CoA thioesterase
BJD12_19530	COG1024	Enoyl-CoA hydratase
BJD12_19535	COG0824	Thioesterase
BJD12_19540	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD12_19555	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BJD12_19560	COG0268	Binds directly to 16S ribosomal RNA
BJD12_19565	COG0728	peptidoglycan biosynthetic process
BJD12_19570	COG0196	riboflavin kinase activity
BJD12_19580	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD12_19585	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD12_19600	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD12_19605	COG1845	cytochrome c oxidase, subunit III
BJD12_19610	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BJD12_19625	COG3152	Membrane
BJD12_19635	COG2207	Transcriptional regulator
BJD12_19640	COG0326	Molecular chaperone. Has ATPase activity
BJD12_19650	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD12_19655	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD12_19660	COG2172	sigma factor antagonist activity
BJD12_19680	COG3507	Belongs to the glycosyl hydrolase 43 family
BJD12_19685	COG4771	TonB-dependent receptor
BJD12_19695	COG5507	3-demethylubiquinone-9 3-methyltransferase
BJD12_19700	COG3706	GGDEF domain
BJD12_19700	COG0745	RESPONSE REGULATOR receiver
BJD12_19710	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD12_19715	COG3437	response regulator, receiver
BJD12_19715	COG2205	protein histidine kinase activity
BJD12_19715	COG3850	Histidine kinase
BJD12_19715	COG4999	Histidine kinase
BJD12_19720	COG0784	Response regulator, receiver
BJD12_19720	COG4191	Histidine kinase
BJD12_19745	COG3534	alpha-L-arabinofuranosidase
BJD12_19760	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD12_19765	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD12_19775	COG2070	2-Nitropropane dioxygenase
BJD12_19795	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD12_19805	COG0534	Mate efflux family protein
BJD12_19815	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD12_19885	COG0840	transmembrane signaling receptor activity
BJD12_19905	COG3250	beta-galactosidase activity
BJD12_19910	COG3867	Arabinogalactan endo-beta-1,4-galactanase
BJD12_19930	COG1960	acyl-CoA dehydrogenase activity
BJD12_19935	COG1024	Enoyl-CoA hydratase
BJD12_19975	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD12_19980	COG0481	GTPase activity
BJD12_20020	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD12_20035	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BJD12_20040	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
BJD12_20045	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD12_20050	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD12_20060	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD12_20065	COG1278	Cold shock
BJD12_20070	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD12_20080	COG1201	RNA secondary structure unwinding
BJD12_20085	COG1793	dna ligase
BJD12_20095	COG1793	dna ligase
BJD12_20095	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD12_20110	COG3706	GGDEF domain
BJD12_20110	COG0745	RESPONSE REGULATOR receiver
BJD12_20125	COG0183	Belongs to the thiolase family
BJD12_20145	COG1451	nucleotide metabolic process
BJD12_20150	COG5487	UPF0391 membrane protein
BJD12_20160	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD12_20200	COG1047	Peptidyl-prolyl cis-trans
BJD12_20210	COG2824	Alkylphosphonate utilization operon protein PhnA
BJD12_20225	COG1902	pentaerythritol trinitrate reductase activity
BJD12_20230	COG2814	Major facilitator Superfamily
BJD12_20265	COG0392	lysyltransferase activity
BJD12_20265	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BJD12_20275	COG0251	oxidation-reduction process
BJD12_20280	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD12_20295	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD12_20320	COG1595	DNA-templated transcription, initiation
BJD12_20335	COG2878	Part of a membrane complex involved in electron transport
BJD12_20345	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD12_20345	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD12_20365	COG0346	lactoylglutathione lyase activity
BJD12_20370	COG0833	amino acid
BJD12_20375	COG2040	homocysteine
BJD12_20385	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD12_20410	COG1695	Transcriptional regulator
BJD12_20440	COG0825	malonyl-CoA metabolic process
BJD12_20455	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD12_20460	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD12_20470	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD12_20485	COG0750	zinc metalloprotease
BJD12_20490	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BJD12_20495	COG0575	Belongs to the CDS family
BJD12_20510	COG0528	UMP kinase activity
BJD12_20515	COG0745	RESPONSE REGULATOR receiver
BJD12_20515	COG3706	GGDEF domain
BJD12_20520	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD12_20560	COG0024	Methionine aminopeptidase
BJD12_20565	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD12_20580	COG1393	Belongs to the ArsC family
BJD12_20585	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD12_20590	COG0367	asparagine synthase
BJD12_20645	COG1566	PFAM secretion protein HlyD family protein
BJD12_20650	COG2814	Major facilitator Superfamily
BJD12_20705	COG0339	signal peptide processing
BJD12_20710	COG0386	Belongs to the glutathione peroxidase family
BJD12_20750	COG0288	reversible hydration of carbon dioxide
BJD12_20780	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD12_20785	COG0084	hydrolase, TatD family'
BJD12_20800	COG1960	acyl-CoA dehydrogenase activity
BJD12_20815	COG0367	asparagine synthase
BJD12_20825	COG0305	Participates in initiation and elongation during chromosome replication
BJD12_20830	COG0415	Belongs to the DNA photolyase family
BJD12_20845	COG0583	DNA-binding transcription factor activity
BJD12_20860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_20880	COG3706	GGDEF domain
BJD12_20890	COG3706	GGDEF domain
BJD12_20910	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD12_20920	COG2914	Belongs to the UPF0125 (RnfH) family
BJD12_20925	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD12_20935	COG0497	DNA recombination
BJD12_20940	COG1420	regulation of RNA biosynthetic process
BJD12_20945	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD12_20960	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD12_20995	COG1132	(ABC) transporter
BJD12_21020	COG0567	Dehydrogenase, E1 component
BJD12_21030	COG2850	peptidyl-arginine hydroxylation
BJD12_21045	COG1253	flavin adenine dinucleotide binding
BJD12_21075	COG1131	(ABC) transporter
BJD12_21080	COG1725	Transcriptional regulator
BJD12_21090	COG0386	Belongs to the glutathione peroxidase family
BJD12_21125	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD12_21135	COG1410	methionine synthase
BJD12_21135	COG0646	methionine synthase
BJD12_21140	COG1410	methionine synthase
BJD12_21140	COG0646	methionine synthase
BJD12_21150	COG1960	acyl-CoA dehydrogenase activity
BJD12_21165	COG0557	exoribonuclease II activity
BJD12_21175	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD12_21180	COG3706	GGDEF domain
BJD12_21185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD12_21205	COG0704	Plays a role in the regulation of phosphate uptake
BJD12_21210	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD12_21215	COG0581	inorganic phosphate transmembrane transporter activity
BJD12_21220	COG0573	inorganic phosphate transmembrane transporter activity
BJD12_21225	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD12_21250	COG0659	secondary active sulfate transmembrane transporter activity
BJD12_21255	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD12_21265	COG1024	Enoyl-CoA hydratase
BJD12_21275	COG0494	nUDIX hydrolase
BJD12_21360	COG2925	Exonuclease
BJD12_21365	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD12_21370	COG3844	kynureninase activity
BJD12_21385	COG0288	reversible hydration of carbon dioxide
BJD12_21410	COG0017	Asparaginyl-tRNA synthetase
BJD12_21415	COG0316	Belongs to the HesB IscA family
BJD12_21440	COG3115	cell septum assembly
BJD12_21450	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD12_21455	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BJD12_21490	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BJD12_21500	COG4993	Dehydrogenase
BJD12_21515	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD12_21525	COG2986	histidine ammonia-lyase
BJD12_21530	COG1228	amidohydrolase
BJD12_21570	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
BJD12_21575	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BJD12_21580	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BJD12_21590	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD12_21605	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BJD12_21610	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD12_21615	COG0583	DNA-binding transcription factor activity
BJD12_21690	COG2003	Belongs to the UPF0758 family
BJD12_21780	COG0840	transmembrane signaling receptor activity
BJD12_21795	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
BJD12_21800	COG0784	Response regulator, receiver
BJD12_21800	COG4191	Histidine kinase
BJD12_21815	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD12_21825	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD12_21835	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD12_21850	COG1595	DNA-templated transcription, initiation
BJD12_21890	COG2244	polysaccharide biosynthetic process
BJD12_21925	COG4106	trans-aconitate 2-methyltransferase activity
BJD12_21935	COG0438	transferase activity, transferring glycosyl groups
BJD12_21955	COG1132	(ABC) transporter
BJD12_21960	COG0477	Major facilitator Superfamily
BJD12_21965	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BJD12_21980	COG1253	flavin adenine dinucleotide binding
BJD12_22000	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BJD12_22010	COG2134	cdp-diacylglycerol pyrophosphatase
BJD12_22025	COG0504	CTP synthase activity
BJD12_22040	COG0148	phosphopyruvate hydratase activity
BJD12_22045	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD12_22055	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD12_22060	COG0585	pseudouridine synthase activity
BJD12_22065	COG2840	Smr protein MutS2
BJD12_22070	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BJD12_22075	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD12_22080	COG1238	metal cluster binding
BJD12_22090	COG3737	Protein of unknown function (DUF498/DUF598)
BJD12_22095	COG1534	Rna-binding protein
BJD12_22100	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD12_22105	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD12_22110	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD12_22115	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BJD12_22120	COG1923	regulation of RNA biosynthetic process
BJD12_22125	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD12_22130	COG1546	Belongs to the CinA family
BJD12_22135	COG4771	TonB-dependent receptor
BJD12_22140	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BJD12_22145	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD12_22155	COG2137	regulation of response to DNA damage stimulus
BJD12_22160	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD12_22165	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD12_22180	COG1741	Belongs to the pirin family
BJD12_22185	COG0583	DNA-binding transcription factor activity
BJD12_22210	COG0351	phosphomethylpyrimidine kinase
BJD12_22210	COG0352	thiamine-phosphate diphosphorylase activity
BJD12_22225	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD12_22230	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD12_22245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD12_22255	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD12_22260	COG3734	2-keto-3-deoxy-galactonokinase
BJD12_22275	COG0800	Aldolase
BJD12_22315	COG1501	Belongs to the glycosyl hydrolase 31 family
BJD12_22325	COG1070	Carbohydrate kinase
BJD12_22330	COG2115	Belongs to the xylose isomerase family
BJD12_22335	COG0477	Major facilitator Superfamily
BJD12_22355	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD12_22370	COG0617	tRNA 3'-terminal CCA addition
BJD12_22630	COG1199	ATP-dependent helicase activity
BJD12_22640	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD12_22650	COG0745	RESPONSE REGULATOR receiver
BJD12_22730	COG1525	nuclease
BJD12_22785	COG1475	DNA binding
BJD12_22820	COG0629	single-stranded DNA binding
BJD12_22850	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD12_22950	COG4232	protein-disulfide reductase activity
BJD12_22955	COG0210	DNA helicase
BJD12_22995	COG4644	lycopene metabolic process
BJD12_23040	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BJD12_23045	COG0431	NADPH-dependent FMN reductase
BJD12_23070	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BJD12_23095	COG2132	Multicopper oxidase
BJD12_23150	COG0010	Belongs to the arginase family
BJD12_23165	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD12_23170	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD12_23375	COG2801	Transposase and inactivated derivatives
BJD12_23380	COG2963	transposase activity
BJD12_23400	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD12_23400	COG0551	DNA topoisomerase type I activity
BJD12_23435	COG3846	protein secretion by the type IV secretion system
BJD12_23445	COG3451	type IV secretory pathway VirB4
BJD12_23460	COG4962	Type ii secretion system protein e