BJD12_00050 SM00052 Putative diguanylate phosphodiesterase BJD12_00050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_00050 SM00267 diguanylate cyclase BJD12_00060 SM00448 cheY-homologous receiver domain BJD12_00065 SM00387 Histidine kinase-like ATPases BJD12_00075 SM00014 Acid phosphatase homologues BJD12_00140 SM00950 BJD12_00140 BJD12_00170 SM00528 Domain in histone-like proteins of HNS family BJD12_00235 SM00248 ankyrin repeats BJD12_00245 SM00487 DEAD-like helicases superfamily BJD12_00245 SM00490 helicase superfamily c-terminal domain BJD12_00330 SM00530 Helix-turn-helix XRE-family like proteins BJD12_00340 SM00382 ATPases associated with a variety of cellular activities BJD12_00435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00470 SM00912 haemagglutination activity domain BJD12_00550 SM00100 Cyclic nucleotide-monophosphate binding domain BJD12_00550 SM00419 helix_turn_helix, cAMP Regulatory protein BJD12_00630 SM01007 Class II Aldolase and Adducin N-terminal domain BJD12_00680 SM00841 Elongation factor P, C-terminal BJD12_00680 SM01185 BJD12_00680 BJD12_00685 SM00822 BJD12_00685 BJD12_00705 SM00899 BJD12_00705 BJD12_00740 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BJD12_00750 SM00851 MGS-like domain BJD12_00750 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BJD12_00780 SM00850 LytTr DNA-binding domain BJD12_00785 SM00937 BJD12_00785 BJD12_00795 SM00448 cheY-homologous receiver domain BJD12_00795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_00805 SM00073 Histidine Phosphotransfer domain BJD12_00805 SM00387 Histidine kinase-like ATPases BJD12_00805 SM00388 His Kinase A (phosphoacceptor) domain BJD12_00805 SM00448 cheY-homologous receiver domain BJD12_00830 SM00966 SpoVT / AbrB like domain BJD12_00850 SM00052 Putative diguanylate phosphodiesterase BJD12_00850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_00850 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_00850 SM00091 PAS domain BJD12_00850 SM00267 diguanylate cyclase BJD12_00855 SM00448 cheY-homologous receiver domain BJD12_00865 SM00138 Methyltransferase, chemotaxis proteins BJD12_00870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00880 SM00260 Two component signalling adaptor domain BJD12_00895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00935 SM01049 BJD12_00935 BJD12_00945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_00945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_00950 SM00073 Histidine Phosphotransfer domain BJD12_00950 SM00260 Two component signalling adaptor domain BJD12_00950 SM00387 Histidine kinase-like ATPases BJD12_00950 SM01231 BJD12_00950 BJD12_00955 SM00448 cheY-homologous receiver domain BJD12_00965 SM00260 Two component signalling adaptor domain BJD12_01055 SM00073 Histidine Phosphotransfer domain BJD12_01055 SM00260 Two component signalling adaptor domain BJD12_01055 SM00387 Histidine kinase-like ATPases BJD12_01055 SM01231 BJD12_01055 BJD12_01065 SM00448 cheY-homologous receiver domain BJD12_01080 SM00382 ATPases associated with a variety of cellular activities BJD12_01080 SM00962 SRP54-type protein, GTPase domain BJD12_01095 SM00267 diguanylate cyclase BJD12_01105 SM00267 diguanylate cyclase BJD12_01160 SM00382 ATPases associated with a variety of cellular activities BJD12_01225 SM00822 BJD12_01225 BJD12_01250 SM00382 ATPases associated with a variety of cellular activities BJD12_01255 SM00448 cheY-homologous receiver domain BJD12_01265 SM00421 helix_turn_helix, Lux Regulon BJD12_01265 SM00448 cheY-homologous receiver domain BJD12_01305 SM00047 Lysozyme subfamily 2 BJD12_01360 SM00260 Two component signalling adaptor domain BJD12_01360 SM00448 cheY-homologous receiver domain BJD12_01365 SM00858 BJD12_01365 BJD12_01380 SM00387 Histidine kinase-like ATPases BJD12_01385 SM00052 Putative diguanylate phosphodiesterase BJD12_01385 SM00267 diguanylate cyclase BJD12_01385 SM00448 cheY-homologous receiver domain BJD12_01390 SM00091 PAS domain BJD12_01390 SM00387 Histidine kinase-like ATPases BJD12_01395 SM00052 Putative diguanylate phosphodiesterase BJD12_01395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_01395 SM00091 PAS domain BJD12_01395 SM00267 diguanylate cyclase BJD12_01410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_01435 SM00382 ATPases associated with a variety of cellular activities BJD12_01435 SM01086 C-terminal, D2-small domain, of ClpB protein BJD12_01445 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_01465 SM00382 ATPases associated with a variety of cellular activities BJD12_01465 SM00843 BJD12_01465 BJD12_01480 SM00382 ATPases associated with a variety of cellular activities BJD12_01505 SM00562 BJD12_01505 BJD12_01515 SM00028 Tetratricopeptide repeats BJD12_01530 SM00564 beta-propeller repeat BJD12_01535 SM00382 ATPases associated with a variety of cellular activities BJD12_01540 SM00852 Probable molybdopterin binding domain BJD12_01545 SM00450 Rhodanese Homology Domain BJD12_01570 SM00852 Probable molybdopterin binding domain BJD12_01590 SM00448 cheY-homologous receiver domain BJD12_01590 SM01012 BJD12_01590 BJD12_01620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BJD12_01645 SM00052 Putative diguanylate phosphodiesterase BJD12_01650 SM00869 Autotransporter beta-domain BJD12_01655 SM00869 Autotransporter beta-domain BJD12_01685 SM00318 Staphylococcal nuclease homologues BJD12_01740 SM00822 BJD12_01740 BJD12_01815 SM00822 BJD12_01815 BJD12_02050 SM00363 S4 RNA-binding domain BJD12_02055 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_02060 SM00421 helix_turn_helix, Lux Regulon BJD12_02060 SM00448 cheY-homologous receiver domain BJD12_02065 SM00450 Rhodanese Homology Domain BJD12_02085 SM00984 UDP binding domain BJD12_02115 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BJD12_02115 SM00465 GIY-YIG type nucleases (URI domain) BJD12_02125 SM00226 Low molecular weight phosphatase family BJD12_02140 SM00382 ATPases associated with a variety of cellular activities BJD12_02155 SM00849 Metallo-beta-lactamase superfamily BJD12_02170 SM00382 ATPases associated with a variety of cellular activities BJD12_02225 SM00382 ATPases associated with a variety of cellular activities BJD12_02310 SM00448 cheY-homologous receiver domain BJD12_02315 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_02315 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_02315 SM00091 PAS domain BJD12_02315 SM00387 Histidine kinase-like ATPases BJD12_02315 SM00388 His Kinase A (phosphoacceptor) domain BJD12_02315 SM00448 cheY-homologous receiver domain BJD12_02320 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_02320 SM00732 Likely ribonuclease with RNase H fold. BJD12_02390 SM00479 BJD12_02390 BJD12_02400 SM00529 Helix-turn-helix diphteria tox regulatory element BJD12_02440 SM00342 helix_turn_helix, arabinose operon control protein BJD12_02445 SM00387 Histidine kinase-like ATPases BJD12_02450 SM00421 helix_turn_helix, Lux Regulon BJD12_02450 SM00448 cheY-homologous receiver domain BJD12_02455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_02470 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_02470 SM01240 BJD12_02470 BJD12_02495 SM00822 BJD12_02495 BJD12_02505 SM00028 Tetratricopeptide repeats BJD12_02515 SM00411 bacterial (prokaryotic) histone like domain BJD12_02520 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_02595 SM00354 helix_turn _helix lactose operon repressor BJD12_02620 SM00363 S4 RNA-binding domain BJD12_02650 SM00382 ATPases associated with a variety of cellular activities BJD12_02725 SM00382 ATPases associated with a variety of cellular activities BJD12_02730 SM00382 ATPases associated with a variety of cellular activities BJD12_02760 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BJD12_02770 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BJD12_02790 SM00859 Semialdehyde dehydrogenase, NAD binding domain BJD12_02835 SM00840 BJD12_02835 BJD12_02855 SM01234 BJD12_02855 BJD12_02935 SM00841 Elongation factor P, C-terminal BJD12_02935 SM01185 BJD12_02935 BJD12_02945 SM00052 Putative diguanylate phosphodiesterase BJD12_02945 SM00267 diguanylate cyclase BJD12_02945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_02985 SM00382 ATPases associated with a variety of cellular activities BJD12_02990 SM00382 ATPases associated with a variety of cellular activities BJD12_02990 SM00487 DEAD-like helicases superfamily BJD12_02990 SM00490 helicase superfamily c-terminal domain BJD12_03020 SM00357 Cold shock protein domain BJD12_03030 SM01322 BJD12_03030 BJD12_03040 SM00052 Putative diguanylate phosphodiesterase BJD12_03040 SM00267 diguanylate cyclase BJD12_03055 SM00822 BJD12_03055 BJD12_03075 SM00853 MutL C terminal dimerisation domain BJD12_03075 SM01340 BJD12_03075 BJD12_03080 SM00646 BJD12_03080 BJD12_03120 SM00474 3'-5' exonuclease BJD12_03135 SM00528 Domain in histone-like proteins of HNS family BJD12_03160 SM00530 Helix-turn-helix XRE-family like proteins BJD12_03175 SM00267 diguanylate cyclase BJD12_03180 SM00260 Two component signalling adaptor domain BJD12_03185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_03185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_03195 SM00487 DEAD-like helicases superfamily BJD12_03195 SM00490 helicase superfamily c-terminal domain BJD12_03250 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_03275 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_03275 SM01091 Transporter associated domain BJD12_03310 SM00382 ATPases associated with a variety of cellular activities BJD12_03345 SM01230 BJD12_03345 BJD12_03355 SM01230 BJD12_03355 BJD12_03365 SM00267 diguanylate cyclase BJD12_03365 SM00448 cheY-homologous receiver domain BJD12_03425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_03425 SM00091 PAS domain BJD12_03425 SM00387 Histidine kinase-like ATPases BJD12_03425 SM00388 His Kinase A (phosphoacceptor) domain BJD12_03425 SM00448 cheY-homologous receiver domain BJD12_03425 SM01079 BJD12_03425 BJD12_03430 SM00448 cheY-homologous receiver domain BJD12_03430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_03580 SM01323 BJD12_03580 BJD12_03595 SM00344 helix_turn_helix ASNC type BJD12_03665 SM00387 Histidine kinase-like ATPases BJD12_03695 SM00944 Pro-kumamolisin, activation domain BJD12_03740 SM01130 BJD12_03740 BJD12_03765 SM00342 helix_turn_helix, arabinose operon control protein BJD12_03770 SM00382 ATPases associated with a variety of cellular activities BJD12_03770 SM00962 SRP54-type protein, GTPase domain BJD12_03770 SM00963 SRP54-type protein, helical bundle domain BJD12_03780 SM00478 endonuclease III BJD12_03795 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_03795 SM00091 PAS domain BJD12_03795 SM00387 Histidine kinase-like ATPases BJD12_03795 SM00388 His Kinase A (phosphoacceptor) domain BJD12_03795 SM00448 cheY-homologous receiver domain BJD12_03845 SM00507 HNH nucleases BJD12_03850 SM00861 Transketolase, pyrimidine binding domain BJD12_03875 SM00849 Metallo-beta-lactamase superfamily BJD12_03965 SM00422 helix_turn_helix, mercury resistance BJD12_03970 SM00411 bacterial (prokaryotic) histone like domain BJD12_03975 SM00873 B3/4 domain BJD12_03975 SM00874 tRNA synthetase B5 domain BJD12_03975 SM00896 Ferredoxin-fold anticodon binding domain BJD12_04000 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BJD12_04005 SM00354 helix_turn _helix lactose operon repressor BJD12_04010 SM00642 Alpha-amylase domain BJD12_04040 SM00642 Alpha-amylase domain BJD12_04090 SM00382 ATPases associated with a variety of cellular activities BJD12_04150 SM00487 DEAD-like helicases superfamily BJD12_04150 SM00490 helicase superfamily c-terminal domain BJD12_04240 SM01001 AIR carboxylase BJD12_04260 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_04260 SM00322 K homology RNA-binding domain BJD12_04265 SM01387 BJD12_04265 BJD12_04285 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_04285 SM00322 K homology RNA-binding domain BJD12_04335 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BJD12_04340 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BJD12_04385 SM00822 BJD12_04385 BJD12_04405 SM00052 Putative diguanylate phosphodiesterase BJD12_04405 SM00267 diguanylate cyclase BJD12_04405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_04470 SM00859 Semialdehyde dehydrogenase, NAD binding domain BJD12_04510 SM00257 Lysin motif BJD12_04560 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_04630 SM01160 BJD12_04630 BJD12_04690 SM00382 ATPases associated with a variety of cellular activities BJD12_04690 SM00448 cheY-homologous receiver domain BJD12_04695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_04695 SM00387 Histidine kinase-like ATPases BJD12_04695 SM00388 His Kinase A (phosphoacceptor) domain BJD12_04720 SM00098 Alkaline phosphatase homologues BJD12_04725 SM00977 TilS substrate C-terminal domain BJD12_04745 SM01351 BJD12_04745 BJD12_04780 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_04875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BJD12_04910 SM00382 ATPases associated with a variety of cellular activities BJD12_04950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_04950 SM00267 diguanylate cyclase BJD12_04955 SM00363 S4 RNA-binding domain BJD12_04960 SM00052 Putative diguanylate phosphodiesterase BJD12_04960 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_04960 SM00091 PAS domain BJD12_04960 SM00267 diguanylate cyclase BJD12_04965 SM00487 DEAD-like helicases superfamily BJD12_04965 SM00490 helicase superfamily c-terminal domain BJD12_05010 SM00342 helix_turn_helix, arabinose operon control protein BJD12_05010 SM00478 endonuclease III BJD12_05010 SM01009 AlkA N-terminal domain BJD12_05110 SM00342 helix_turn_helix, arabinose operon control protein BJD12_05190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_05190 SM00387 Histidine kinase-like ATPases BJD12_05190 SM00388 His Kinase A (phosphoacceptor) domain BJD12_05195 SM00448 cheY-homologous receiver domain BJD12_05195 SM00862 Transcriptional regulatory protein, C terminal BJD12_05220 SM00487 DEAD-like helicases superfamily BJD12_05220 SM00490 helicase superfamily c-terminal domain BJD12_05220 SM00982 BJD12_05220 BJD12_05220 SM01058 CarD-like/TRCF domain BJD12_05230 SM00073 Histidine Phosphotransfer domain BJD12_05230 SM00260 Two component signalling adaptor domain BJD12_05230 SM00387 Histidine kinase-like ATPases BJD12_05230 SM01231 BJD12_05230 BJD12_05240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_05240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_05245 SM00260 Two component signalling adaptor domain BJD12_05250 SM00052 Putative diguanylate phosphodiesterase BJD12_05250 SM00448 cheY-homologous receiver domain BJD12_05255 SM00138 Methyltransferase, chemotaxis proteins BJD12_05260 SM00448 cheY-homologous receiver domain BJD12_05270 SM00155 Phospholipase D. Active site motifs. BJD12_05285 SM00855 Phosphoglycerate mutase family BJD12_05345 SM00248 ankyrin repeats BJD12_05375 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_05390 SM00829 Enoylreductase BJD12_05460 SM00732 Likely ribonuclease with RNase H fold. BJD12_05500 SM00382 ATPases associated with a variety of cellular activities BJD12_05515 SM00411 bacterial (prokaryotic) histone like domain BJD12_05545 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BJD12_05560 SM00382 ATPases associated with a variety of cellular activities BJD12_05590 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BJD12_05595 SM00671 Sel1-like repeats. BJD12_05730 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_05750 SM00382 ATPases associated with a variety of cellular activities BJD12_05795 SM00924 MgtE intracellular N domain BJD12_05820 SM00656 BJD12_05820 BJD12_05835 SM00421 helix_turn_helix, Lux Regulon BJD12_05870 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BJD12_05895 SM00422 helix_turn_helix, mercury resistance BJD12_05980 SM00387 Histidine kinase-like ATPases BJD12_05980 SM00388 His Kinase A (phosphoacceptor) domain BJD12_05980 SM00448 cheY-homologous receiver domain BJD12_05985 SM00387 Histidine kinase-like ATPases BJD12_05985 SM00388 His Kinase A (phosphoacceptor) domain BJD12_05985 SM00448 cheY-homologous receiver domain BJD12_05990 SM00387 Histidine kinase-like ATPases BJD12_05990 SM00388 His Kinase A (phosphoacceptor) domain BJD12_05990 SM00448 cheY-homologous receiver domain BJD12_05995 SM00867 YceI-like domain BJD12_06005 SM00867 YceI-like domain BJD12_06010 SM00357 Cold shock protein domain BJD12_06075 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_06160 SM00244 prohibitin homologues BJD12_06205 SM00812 Alpha-L-fucosidase BJD12_06210 SM00636 BJD12_06210 BJD12_06230 SM00758 BJD12_06230 BJD12_06230 SM01217 BJD12_06230 BJD12_06235 SM01149 BJD12_06235 BJD12_06275 SM00369 Leucine-rich repeats, typical (most populated) subfamily BJD12_06290 SM00327 von Willebrand factor (vWF) type A domain BJD12_06310 SM00260 Two component signalling adaptor domain BJD12_06320 SM00073 Histidine Phosphotransfer domain BJD12_06320 SM00260 Two component signalling adaptor domain BJD12_06320 SM00387 Histidine kinase-like ATPases BJD12_06320 SM00448 cheY-homologous receiver domain BJD12_06320 SM01231 BJD12_06320 BJD12_06325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_06330 SM00260 Two component signalling adaptor domain BJD12_06335 SM00448 cheY-homologous receiver domain BJD12_06340 SM00448 cheY-homologous receiver domain BJD12_06365 SM00491 BJD12_06365 BJD12_06390 SM00954 Region found in RelA / SpoT proteins BJD12_06440 SM00382 ATPases associated with a variety of cellular activities BJD12_06440 SM00487 DEAD-like helicases superfamily BJD12_06440 SM00490 helicase superfamily c-terminal domain BJD12_06440 SM00847 Helicase associated domain (HA2) Add an annotation BJD12_06450 SM00341 Helicase and RNase D C-terminal BJD12_06450 SM00487 DEAD-like helicases superfamily BJD12_06450 SM00490 helicase superfamily c-terminal domain BJD12_06450 SM00956 BJD12_06450 BJD12_06460 SM00448 cheY-homologous receiver domain BJD12_06470 SM00363 S4 RNA-binding domain BJD12_06480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_06480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_06485 SM00448 cheY-homologous receiver domain BJD12_06515 SM00028 Tetratricopeptide repeats BJD12_06550 SM00382 ATPases associated with a variety of cellular activities BJD12_06555 SM00860 SMI1 / KNR4 family BJD12_06565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BJD12_06600 SM00834 Putative regulatory protein BJD12_06625 SM00849 Metallo-beta-lactamase superfamily BJD12_06630 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BJD12_06680 SM00382 ATPases associated with a variety of cellular activities BJD12_06765 SM00855 Phosphoglycerate mutase family BJD12_06820 SM00382 ATPases associated with a variety of cellular activities BJD12_06820 SM01086 C-terminal, D2-small domain, of ClpB protein BJD12_06880 SM00564 beta-propeller repeat BJD12_06885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_06940 SM00387 Histidine kinase-like ATPases BJD12_06940 SM00388 His Kinase A (phosphoacceptor) domain BJD12_06945 SM00382 ATPases associated with a variety of cellular activities BJD12_06945 SM00448 cheY-homologous receiver domain BJD12_06980 SM00387 Histidine kinase-like ATPases BJD12_06980 SM00388 His Kinase A (phosphoacceptor) domain BJD12_06985 SM00448 cheY-homologous receiver domain BJD12_06985 SM00862 Transcriptional regulatory protein, C terminal BJD12_07000 SM00642 Alpha-amylase domain BJD12_07005 SM00528 Domain in histone-like proteins of HNS family BJD12_07130 SM00220 Serine/Threonine protein kinases, catalytic domain BJD12_07145 SM00530 Helix-turn-helix XRE-family like proteins BJD12_07180 SM00869 Autotransporter beta-domain BJD12_07230 SM00354 helix_turn _helix lactose operon repressor BJD12_07265 SM00967 RNA 2'-O ribose methyltransferase substrate binding BJD12_07335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_07335 SM00387 Histidine kinase-like ATPases BJD12_07365 SM00506 Appr-1"-p processing enzyme BJD12_07410 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BJD12_07440 SM00849 Metallo-beta-lactamase superfamily BJD12_07455 SM00382 ATPases associated with a variety of cellular activities BJD12_07520 SM00861 Transketolase, pyrimidine binding domain BJD12_07535 SM00028 Tetratricopeptide repeats BJD12_07535 SM00327 von Willebrand factor (vWF) type A domain BJD12_07540 SM00327 von Willebrand factor (vWF) type A domain BJD12_07555 SM00382 ATPases associated with a variety of cellular activities BJD12_07560 SM00965 Secretin and TonB N terminus short domain BJD12_07615 SM00487 DEAD-like helicases superfamily BJD12_07615 SM00490 helicase superfamily c-terminal domain BJD12_07630 SM00858 BJD12_07630 BJD12_07640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BJD12_07655 SM01130 BJD12_07655 BJD12_07670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_07670 SM00954 Region found in RelA / SpoT proteins BJD12_07705 SM00382 ATPases associated with a variety of cellular activities BJD12_07720 SM01409 BJD12_07720 BJD12_07725 SM00072 Guanylate kinase homologues. BJD12_07750 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_07780 SM01011 Aminopeptidase P, N-terminal domain BJD12_07890 SM00382 ATPases associated with a variety of cellular activities BJD12_08075 SM00028 Tetratricopeptide repeats BJD12_08075 SM00421 helix_turn_helix, Lux Regulon BJD12_08165 SM00464 Found in ATP-dependent protease La (LON) BJD12_08220 SM00342 helix_turn_helix, arabinose operon control protein BJD12_08225 SM00862 Transcriptional regulatory protein, C terminal BJD12_08240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_08270 SM00917 LeuA allosteric (dimerisation) domain BJD12_08280 SM01329 BJD12_08280 BJD12_08305 SM00267 diguanylate cyclase BJD12_08355 SM00919 Malic enzyme, NAD binding domain BJD12_08355 SM01274 BJD12_08355 BJD12_08370 SM00387 Histidine kinase-like ATPases BJD12_08370 SM00388 His Kinase A (phosphoacceptor) domain BJD12_08370 SM00448 cheY-homologous receiver domain BJD12_08400 SM00421 helix_turn_helix, Lux Regulon BJD12_08400 SM00448 cheY-homologous receiver domain BJD12_08410 SM00387 Histidine kinase-like ATPases BJD12_08410 SM00388 His Kinase A (phosphoacceptor) domain BJD12_08415 SM00448 cheY-homologous receiver domain BJD12_08415 SM00862 Transcriptional regulatory protein, C terminal BJD12_08430 SM00822 BJD12_08430 BJD12_08435 SM00354 helix_turn _helix lactose operon repressor BJD12_08450 SM00642 Alpha-amylase domain BJD12_08460 SM01154 BJD12_08460 BJD12_08490 SM00450 Rhodanese Homology Domain BJD12_08570 SM00829 Enoylreductase BJD12_08595 SM00448 cheY-homologous receiver domain BJD12_08595 SM00862 Transcriptional regulatory protein, C terminal BJD12_08600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_08600 SM00387 Histidine kinase-like ATPases BJD12_08600 SM00388 His Kinase A (phosphoacceptor) domain BJD12_08625 SM00849 Metallo-beta-lactamase superfamily BJD12_08675 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_08695 SM00656 BJD12_08695 BJD12_08730 SM00528 Domain in histone-like proteins of HNS family BJD12_08745 SM00382 ATPases associated with a variety of cellular activities BJD12_08785 SM00882 Coenzyme A transferase BJD12_08790 SM00882 Coenzyme A transferase BJD12_08805 SM00984 UDP binding domain BJD12_08830 SM00893 Electron transfer flavoprotein domain BJD12_08835 SM00893 Electron transfer flavoprotein domain BJD12_08915 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_08955 SM00487 DEAD-like helicases superfamily BJD12_08955 SM00490 helicase superfamily c-terminal domain BJD12_08975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_09085 SM00382 ATPases associated with a variety of cellular activities BJD12_09105 SM00382 ATPases associated with a variety of cellular activities BJD12_09105 SM00448 cheY-homologous receiver domain BJD12_09110 SM00387 Histidine kinase-like ATPases BJD12_09130 SM00830 Chorismate mutase type II BJD12_09140 SM00382 ATPases associated with a variety of cellular activities BJD12_09205 SM00986 Uracil DNA glycosylase superfamily BJD12_09205 SM00987 UreE urease accessory protein, C-terminal domain BJD12_09230 SM00382 ATPases associated with a variety of cellular activities BJD12_09230 SM00930 BJD12_09230 BJD12_09250 SM00387 Histidine kinase-like ATPases BJD12_09250 SM00388 His Kinase A (phosphoacceptor) domain BJD12_09250 SM00448 cheY-homologous receiver domain BJD12_09300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_09300 SM00091 PAS domain BJD12_09300 SM00387 Histidine kinase-like ATPases BJD12_09300 SM00388 His Kinase A (phosphoacceptor) domain BJD12_09300 SM00448 cheY-homologous receiver domain BJD12_09320 SM01005 Alanine racemase, C-terminal domain BJD12_09330 SM00344 helix_turn_helix ASNC type BJD12_09385 SM00382 ATPases associated with a variety of cellular activities BJD12_09410 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BJD12_09415 SM00986 Uracil DNA glycosylase superfamily BJD12_09415 SM00987 UreE urease accessory protein, C-terminal domain BJD12_09425 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_09500 SM00448 cheY-homologous receiver domain BJD12_09500 SM00850 LytTr DNA-binding domain BJD12_09505 SM00387 Histidine kinase-like ATPases BJD12_09540 SM00091 PAS domain BJD12_09540 SM00138 Methyltransferase, chemotaxis proteins BJD12_09540 SM00911 HWE histidine kinase BJD12_09545 SM00448 cheY-homologous receiver domain BJD12_09555 SM00382 ATPases associated with a variety of cellular activities BJD12_09555 SM00448 cheY-homologous receiver domain BJD12_09620 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_09670 SM00382 ATPases associated with a variety of cellular activities BJD12_09690 SM00477 DNA/RNA non-specific endonuclease BJD12_09690 SM00892 DNA/RNA non-specific endonuclease BJD12_09755 SM00342 helix_turn_helix, arabinose operon control protein BJD12_09875 SM00257 Lysin motif BJD12_09900 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BJD12_09900 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BJD12_09900 SM00493 BJD12_09900 BJD12_09955 SM00487 DEAD-like helicases superfamily BJD12_09955 SM00490 helicase superfamily c-terminal domain BJD12_09995 SM00986 Uracil DNA glycosylase superfamily BJD12_09995 SM00987 UreE urease accessory protein, C-terminal domain BJD12_10000 SM00448 cheY-homologous receiver domain BJD12_10010 SM00382 ATPases associated with a variety of cellular activities BJD12_10015 SM00487 DEAD-like helicases superfamily BJD12_10015 SM00490 helicase superfamily c-terminal domain BJD12_10025 SM00357 Cold shock protein domain BJD12_10025 SM00382 ATPases associated with a variety of cellular activities BJD12_10025 SM00959 Rho termination factor, N-terminal domain BJD12_10060 SM00257 Lysin motif BJD12_10100 SM01150 BJD12_10100 BJD12_10145 SM00644 BJD12_10145 BJD12_10155 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BJD12_10190 SM01217 BJD12_10190 BJD12_10195 SM00905 Dihydroneopterin aldolase BJD12_10220 SM00400 zinc finger BJD12_10220 SM00493 BJD12_10220 BJD12_10220 SM00766 DNA primase DnaG DnaB-binding BJD12_10330 SM00363 S4 RNA-binding domain BJD12_10380 SM00470 ParB-like nuclease domain BJD12_10405 SM01259 BJD12_10405 BJD12_10435 SM00836 DALR anticodon binding domain BJD12_10435 SM01016 Arginyl tRNA synthetase N terminal dom BJD12_10505 SM00938 Nitrogen regulatory protein P-II BJD12_10515 SM00382 ATPases associated with a variety of cellular activities BJD12_10530 SM00052 Putative diguanylate phosphodiesterase BJD12_10555 SM00244 prohibitin homologues BJD12_10600 SM00448 cheY-homologous receiver domain BJD12_10600 SM00862 Transcriptional regulatory protein, C terminal BJD12_10605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_10605 SM00387 Histidine kinase-like ATPases BJD12_10605 SM00388 His Kinase A (phosphoacceptor) domain BJD12_10625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_10665 SM01060 BJD12_10665 BJD12_10680 SM00421 helix_turn_helix, Lux Regulon BJD12_10680 SM00448 cheY-homologous receiver domain BJD12_10700 SM00382 ATPases associated with a variety of cellular activities BJD12_10740 SM00849 Metallo-beta-lactamase superfamily BJD12_10770 SM00960 Roadblock/LC7 domain BJD12_10835 SM00387 Histidine kinase-like ATPases BJD12_10840 SM00448 cheY-homologous receiver domain BJD12_10840 SM00862 Transcriptional regulatory protein, C terminal BJD12_10865 SM00248 ankyrin repeats BJD12_10870 SM01060 BJD12_10870 BJD12_10880 SM00491 BJD12_10880 BJD12_10915 SM01004 Delta-aminolevulinic acid dehydratase BJD12_10965 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BJD12_10985 SM00382 ATPases associated with a variety of cellular activities BJD12_10995 SM00530 Helix-turn-helix XRE-family like proteins BJD12_11025 SM00382 ATPases associated with a variety of cellular activities BJD12_11085 SM00881 CoA binding domain BJD12_11090 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_11090 SM00924 MgtE intracellular N domain BJD12_11115 SM00226 Low molecular weight phosphatase family BJD12_11120 SM00248 ankyrin repeats BJD12_11130 SM00825 Beta-ketoacyl synthase BJD12_11150 SM00822 BJD12_11150 BJD12_11180 SM00563 Phosphate acyltransferases BJD12_11245 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BJD12_11245 SM00474 3'-5' exonuclease BJD12_11245 SM00475 5'-3' exonuclease BJD12_11245 SM00482 DNA polymerase A domain BJD12_11260 SM00912 haemagglutination activity domain BJD12_11280 SM00331 Sigma factor PP2C-like phosphatases BJD12_11280 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BJD12_11320 SM00240 Forkhead associated domain BJD12_11340 SM00028 Tetratricopeptide repeats BJD12_11350 SM00220 Serine/Threonine protein kinases, catalytic domain BJD12_11405 SM00382 ATPases associated with a variety of cellular activities BJD12_11405 SM01086 C-terminal, D2-small domain, of ClpB protein BJD12_11445 SM00342 helix_turn_helix, arabinose operon control protein BJD12_11455 SM01266 BJD12_11455 BJD12_11475 SM00155 Phospholipase D. Active site motifs. BJD12_11595 SM00421 helix_turn_helix, Lux Regulon BJD12_11595 SM00448 cheY-homologous receiver domain BJD12_11645 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BJD12_11660 SM00346 helix_turn_helix isocitrate lyase regulation BJD12_11670 SM00091 PAS domain BJD12_11670 SM00387 Histidine kinase-like ATPases BJD12_11670 SM00388 His Kinase A (phosphoacceptor) domain BJD12_11670 SM00448 cheY-homologous receiver domain BJD12_11700 SM00564 beta-propeller repeat BJD12_11750 SM00382 ATPases associated with a variety of cellular activities BJD12_11835 SM00354 helix_turn _helix lactose operon repressor BJD12_11850 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BJD12_11860 SM00758 BJD12_11860 BJD12_11860 SM01217 BJD12_11860 BJD12_11890 SM00612 BJD12_11890 BJD12_11915 SM00633 Glycosyl hydrolase family 10 BJD12_11965 SM00829 Enoylreductase BJD12_11970 SM00563 Phosphate acyltransferases BJD12_11980 SM00354 helix_turn _helix lactose operon repressor BJD12_12000 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BJD12_12035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_12035 SM00388 His Kinase A (phosphoacceptor) domain BJD12_12050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD12_12050 SM01232 BJD12_12050 BJD12_12085 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_12140 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_12175 SM00155 Phospholipase D. Active site motifs. BJD12_12335 SM00382 ATPases associated with a variety of cellular activities BJD12_12365 SM00901 BJD12_12365 BJD12_12385 SM00829 Enoylreductase BJD12_12430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_12430 SM00091 PAS domain BJD12_12430 SM00267 diguanylate cyclase BJD12_12490 SM00014 Acid phosphatase homologues BJD12_12505 SM00028 Tetratricopeptide repeats BJD12_12530 SM00382 ATPases associated with a variety of cellular activities BJD12_12530 SM00760 Bacterial dnaA protein helix-turn-helix domain BJD12_12535 SM00480 DNA polymerase III beta subunit BJD12_12545 SM00387 Histidine kinase-like ATPases BJD12_12545 SM00433 TopoisomeraseII BJD12_12560 SM00028 Tetratricopeptide repeats BJD12_12610 SM00155 Phospholipase D. Active site motifs. BJD12_12650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_12650 SM00245 tail specific protease BJD12_12695 SM00829 Enoylreductase BJD12_12825 SM00487 DEAD-like helicases superfamily BJD12_12825 SM00490 helicase superfamily c-terminal domain BJD12_12860 SM00822 BJD12_12860 BJD12_12930 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_12930 SM00387 Histidine kinase-like ATPases BJD12_12930 SM00388 His Kinase A (phosphoacceptor) domain BJD12_12930 SM00448 cheY-homologous receiver domain BJD12_13140 SM00829 Enoylreductase BJD12_13155 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BJD12_13190 SM00421 helix_turn_helix, Lux Regulon BJD12_13190 SM00448 cheY-homologous receiver domain BJD12_13200 SM00028 Tetratricopeptide repeats BJD12_13200 SM00862 Transcriptional regulatory protein, C terminal BJD12_13315 SM00642 Alpha-amylase domain BJD12_13320 SM00642 Alpha-amylase domain BJD12_13325 SM00642 Alpha-amylase domain BJD12_13400 SM00354 helix_turn _helix lactose operon repressor BJD12_13440 SM00344 helix_turn_helix ASNC type BJD12_13465 SM00382 ATPases associated with a variety of cellular activities BJD12_13480 SM00382 ATPases associated with a variety of cellular activities BJD12_13530 SM00855 Phosphoglycerate mutase family BJD12_13535 SM00867 YceI-like domain BJD12_13540 SM00155 Phospholipase D. Active site motifs. BJD12_13555 SM00563 Phosphate acyltransferases BJD12_13565 SM00028 Tetratricopeptide repeats BJD12_13590 SM01230 BJD12_13590 BJD12_13595 SM00938 Nitrogen regulatory protein P-II BJD12_13605 SM00387 Histidine kinase-like ATPases BJD12_13605 SM00388 His Kinase A (phosphoacceptor) domain BJD12_13610 SM00382 ATPases associated with a variety of cellular activities BJD12_13610 SM00448 cheY-homologous receiver domain BJD12_13675 SM00450 Rhodanese Homology Domain BJD12_13700 SM00387 Histidine kinase-like ATPases BJD12_13700 SM00388 His Kinase A (phosphoacceptor) domain BJD12_13705 SM00382 ATPases associated with a variety of cellular activities BJD12_13705 SM00448 cheY-homologous receiver domain BJD12_13815 SM00563 Phosphate acyltransferases BJD12_13860 SM00342 helix_turn_helix, arabinose operon control protein BJD12_13885 SM00100 Cyclic nucleotide-monophosphate binding domain BJD12_13885 SM00267 diguanylate cyclase BJD12_13910 SM00878 Biotin carboxylase C-terminal domain BJD12_13935 SM00953 BJD12_13935 BJD12_13980 SM00833 Cobalamin synthesis protein cobW C-terminal domain BJD12_14010 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_14050 SM00829 Enoylreductase BJD12_14080 SM00487 DEAD-like helicases superfamily BJD12_14080 SM00490 helicase superfamily c-terminal domain BJD12_14080 SM00847 Helicase associated domain (HA2) Add an annotation BJD12_14085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_14085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_14095 SM00095 Transthyretin BJD12_14145 SM00028 Tetratricopeptide repeats BJD12_14260 SM00342 helix_turn_helix, arabinose operon control protein BJD12_14320 SM00829 Enoylreductase BJD12_14325 SM00829 Enoylreductase BJD12_14475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_14480 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_14505 SM00342 helix_turn_helix, arabinose operon control protein BJD12_14535 SM00420 helix_turn_helix, Deoxyribose operon repressor BJD12_14535 SM01134 BJD12_14535 BJD12_14545 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_14545 SM00895 BJD12_14545 BJD12_14555 SM00882 Coenzyme A transferase BJD12_14560 SM00882 Coenzyme A transferase BJD12_14580 SM00998 Adenylosuccinate lyase C-terminus BJD12_14600 SM00346 helix_turn_helix isocitrate lyase regulation BJD12_14605 SM00090 RIO-like kinase BJD12_14620 SM01228 BJD12_14620 BJD12_14675 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_14675 SM00876 Biotin and Thiamin Synthesis associated domain BJD12_14705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_14705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_14745 SM00267 diguanylate cyclase BJD12_14755 SM00642 Alpha-amylase domain BJD12_14760 SM00642 Alpha-amylase domain BJD12_14770 SM00642 Alpha-amylase domain BJD12_14780 SM00642 Alpha-amylase domain BJD12_14835 SM00822 BJD12_14835 BJD12_14850 SM00487 DEAD-like helicases superfamily BJD12_14850 SM00490 helicase superfamily c-terminal domain BJD12_14870 SM00326 Src homology 3 domains BJD12_14875 SM00861 Transketolase, pyrimidine binding domain BJD12_14885 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BJD12_14905 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_14995 SM00271 DnaJ molecular chaperone homology domain BJD12_15020 SM00046 Diacylglycerol kinase catalytic domain (presumed) BJD12_15045 SM00903 Flavin reductase like domain BJD12_15065 SM00100 Cyclic nucleotide-monophosphate binding domain BJD12_15065 SM00419 helix_turn_helix, cAMP Regulatory protein BJD12_15120 SM00073 Histidine Phosphotransfer domain BJD12_15120 SM00387 Histidine kinase-like ATPases BJD12_15120 SM00388 His Kinase A (phosphoacceptor) domain BJD12_15120 SM00448 cheY-homologous receiver domain BJD12_15125 SM00052 Putative diguanylate phosphodiesterase BJD12_15125 SM00267 diguanylate cyclase BJD12_15125 SM00448 cheY-homologous receiver domain BJD12_15170 SM00563 Phosphate acyltransferases BJD12_15190 SM01209 BJD12_15190 BJD12_15190 SM01210 BJD12_15190 BJD12_15200 SM00798 AICARFT/IMPCHase bienzyme BJD12_15200 SM00851 MGS-like domain BJD12_15215 SM00195 Dual specificity phosphatase, catalytic domain BJD12_15235 SM00563 Phosphate acyltransferases BJD12_15260 SM00530 Helix-turn-helix XRE-family like proteins BJD12_15285 SM00878 Biotin carboxylase C-terminal domain BJD12_15320 SM00883 Chaperonin 10 Kd subunit BJD12_15425 SM00867 YceI-like domain BJD12_15470 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BJD12_15480 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_15480 SM00895 BJD12_15480 BJD12_15505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_15505 SM00331 Sigma factor PP2C-like phosphatases BJD12_15590 SM01321 BJD12_15590 BJD12_15745 SM00267 diguanylate cyclase BJD12_15830 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BJD12_15830 SM01232 BJD12_15830 BJD12_15850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_15860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_15860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_15860 SM00091 PAS domain BJD12_15860 SM00267 diguanylate cyclase BJD12_15865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_15865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_15865 SM01049 BJD12_15865 BJD12_15870 SM00637 BJD12_15870 BJD12_15880 SM00267 diguanylate cyclase BJD12_15935 SM00448 cheY-homologous receiver domain BJD12_15935 SM00850 LytTr DNA-binding domain BJD12_16035 SM00382 ATPases associated with a variety of cellular activities BJD12_16035 SM01086 C-terminal, D2-small domain, of ClpB protein BJD12_16070 SM00267 diguanylate cyclase BJD12_16075 SM01263 BJD12_16075 BJD12_16090 SM00564 beta-propeller repeat BJD12_16095 SM00062 Bacterial periplasmic substrate-binding proteins BJD12_16095 SM00248 ankyrin repeats BJD12_16120 SM00382 ATPases associated with a variety of cellular activities BJD12_16130 SM00268 Actin BJD12_16155 SM00710 Parallel beta-helix repeats BJD12_16170 SM00936 Penicillin-binding protein 5, C-terminal domain BJD12_16190 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_16195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_16195 SM00245 tail specific protease BJD12_16250 SM01350 BJD12_16250 BJD12_16260 SM00749 bacterial OsmY and nodulation domain BJD12_16265 SM00387 Histidine kinase-like ATPases BJD12_16265 SM00388 His Kinase A (phosphoacceptor) domain BJD12_16270 SM00448 cheY-homologous receiver domain BJD12_16275 SM00387 Histidine kinase-like ATPases BJD12_16275 SM00388 His Kinase A (phosphoacceptor) domain BJD12_16275 SM00448 cheY-homologous receiver domain BJD12_16305 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BJD12_16330 SM00382 ATPases associated with a variety of cellular activities BJD12_16380 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_16380 SM00866 BJD12_16380 BJD12_16390 SM00354 helix_turn _helix lactose operon repressor BJD12_16405 SM00245 tail specific protease BJD12_16485 SM01211 BJD12_16485 BJD12_16510 SM00382 ATPases associated with a variety of cellular activities BJD12_16580 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_16580 SM00866 BJD12_16580 BJD12_16655 SM00028 Tetratricopeptide repeats BJD12_16680 SM00382 ATPases associated with a variety of cellular activities BJD12_16750 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BJD12_16780 SM00387 Histidine kinase-like ATPases BJD12_16780 SM00388 His Kinase A (phosphoacceptor) domain BJD12_16785 SM00448 cheY-homologous receiver domain BJD12_16785 SM00862 Transcriptional regulatory protein, C terminal BJD12_16900 SM00842 Cell division protein FtsA BJD12_16905 SM00864 Tubulin/FtsZ family, GTPase domain BJD12_16905 SM00865 Tubulin/FtsZ family, C-terminal domain BJD12_16925 SM00957 SecA DEAD-like domain BJD12_16925 SM00958 SecA preprotein cross-linking domain BJD12_16930 SM00869 Autotransporter beta-domain BJD12_16965 SM00829 Enoylreductase BJD12_16990 SM00855 Phosphoglycerate mutase family BJD12_16995 SM00642 Alpha-amylase domain BJD12_17030 SM00996 S-adenosyl-L-homocysteine hydrolase BJD12_17030 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BJD12_17145 SM00382 ATPases associated with a variety of cellular activities BJD12_17165 SM00382 ATPases associated with a variety of cellular activities BJD12_17175 SM00448 cheY-homologous receiver domain BJD12_17175 SM00862 Transcriptional regulatory protein, C terminal BJD12_17180 SM00387 Histidine kinase-like ATPases BJD12_17180 SM00388 His Kinase A (phosphoacceptor) domain BJD12_17240 SM00650 Ribosomal RNA adenine dimethylases BJD12_17300 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_17300 SM00895 BJD12_17300 BJD12_17335 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_17400 SM00448 cheY-homologous receiver domain BJD12_17405 SM00387 Histidine kinase-like ATPases BJD12_17405 SM00388 His Kinase A (phosphoacceptor) domain BJD12_17405 SM00448 cheY-homologous receiver domain BJD12_17410 SM00421 helix_turn_helix, Lux Regulon BJD12_17475 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BJD12_17475 SM00475 5'-3' exonuclease BJD12_17505 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BJD12_17505 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BJD12_17620 SM00852 Probable molybdopterin binding domain BJD12_17625 SM00028 Tetratricopeptide repeats BJD12_17630 SM00937 BJD12_17630 BJD12_17640 SM00028 Tetratricopeptide repeats BJD12_17660 SM01400 BJD12_17660 BJD12_17750 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BJD12_17750 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BJD12_17755 SM00649 Ribosomal protein L11/L12 BJD12_17780 SM00663 RNA polymerase I subunit A N-terminus BJD12_17795 SM00838 Elongation factor G C-terminus BJD12_17795 SM00889 Elongation factor G, domain IV BJD12_17805 SM01403 BJD12_17805 BJD12_17825 SM01382 BJD12_17825 BJD12_17825 SM01383 BJD12_17825 BJD12_17840 SM00322 K homology RNA-binding domain BJD12_17860 SM01374 BJD12_17860 BJD12_17865 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BJD12_17925 SM00363 S4 RNA-binding domain BJD12_17925 SM01390 BJD12_17925 BJD12_17930 SM00662 RNA polymerases D BJD12_17970 SM00838 Elongation factor G C-terminus BJD12_18005 SM00829 Enoylreductase BJD12_18055 SM00382 ATPases associated with a variety of cellular activities BJD12_18070 SM00829 Enoylreductase BJD12_18090 SM00855 Phosphoglycerate mutase family BJD12_18140 SM00014 Acid phosphatase homologues BJD12_18160 SM00387 Histidine kinase-like ATPases BJD12_18160 SM00388 His Kinase A (phosphoacceptor) domain BJD12_18165 SM00448 cheY-homologous receiver domain BJD12_18165 SM00862 Transcriptional regulatory protein, C terminal BJD12_18185 SM01329 BJD12_18185 BJD12_18315 SM00400 zinc finger BJD12_18340 SM00646 BJD12_18340 BJD12_18435 SM00495 Chitin-binding domain type 3 BJD12_18505 SM00091 PAS domain BJD12_18505 SM00387 Histidine kinase-like ATPases BJD12_18525 SM00382 ATPases associated with a variety of cellular activities BJD12_18525 SM00994 ClpX C4-type zinc finger BJD12_18525 SM01086 C-terminal, D2-small domain, of ClpB protein BJD12_18530 SM00382 ATPases associated with a variety of cellular activities BJD12_18530 SM00464 Found in ATP-dependent protease La (LON) BJD12_18535 SM00411 bacterial (prokaryotic) histone like domain BJD12_18560 SM00257 Lysin motif BJD12_18565 SM00849 Metallo-beta-lactamase superfamily BJD12_18580 SM00479 BJD12_18580 BJD12_18585 SM00331 Sigma factor PP2C-like phosphatases BJD12_18585 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BJD12_18610 SM00849 Metallo-beta-lactamase superfamily BJD12_18615 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_18680 SM00530 Helix-turn-helix XRE-family like proteins BJD12_18685 SM00271 DnaJ molecular chaperone homology domain BJD12_18785 SM00382 ATPases associated with a variety of cellular activities BJD12_18795 SM00493 BJD12_18795 BJD12_18810 SM00460 Transglutaminase/protease-like homologues BJD12_18860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BJD12_18865 SM00822 BJD12_18865 BJD12_18875 SM00825 Beta-ketoacyl synthase BJD12_18910 SM00382 ATPases associated with a variety of cellular activities BJD12_18955 SM01359 BJD12_18955 BJD12_18955 SM01360 BJD12_18955 BJD12_19020 SM00271 DnaJ molecular chaperone homology domain BJD12_19025 SM00448 cheY-homologous receiver domain BJD12_19030 SM00244 prohibitin homologues BJD12_19035 SM00244 prohibitin homologues BJD12_19040 SM00788 Adenylosuccinate synthetase BJD12_19090 SM00487 DEAD-like helicases superfamily BJD12_19140 SM00855 Phosphoglycerate mutase family BJD12_19195 SM00052 Putative diguanylate phosphodiesterase BJD12_19200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_19225 SM01217 BJD12_19225 BJD12_19230 SM00829 Enoylreductase BJD12_19240 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BJD12_19245 SM01092 CO dehydrogenase flavoprotein C-terminal domain BJD12_19260 SM00974 BJD12_19260 BJD12_19295 SM00481 DNA polymerase alpha chain like domain BJD12_19335 SM00091 PAS domain BJD12_19335 SM00342 helix_turn_helix, arabinose operon control protein BJD12_19345 SM01060 BJD12_19345 BJD12_19400 SM00448 cheY-homologous receiver domain BJD12_19400 SM00862 Transcriptional regulatory protein, C terminal BJD12_19405 SM00387 Histidine kinase-like ATPases BJD12_19405 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19440 SM00421 helix_turn_helix, Lux Regulon BJD12_19440 SM00448 cheY-homologous receiver domain BJD12_19455 SM00478 endonuclease III BJD12_19480 SM00244 prohibitin homologues BJD12_19570 SM00904 Riboflavin kinase BJD12_19615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_19620 SM00382 ATPases associated with a variety of cellular activities BJD12_19630 SM00862 Transcriptional regulatory protein, C terminal BJD12_19635 SM00342 helix_turn_helix, arabinose operon control protein BJD12_19660 SM00387 Histidine kinase-like ATPases BJD12_19670 SM00387 Histidine kinase-like ATPases BJD12_19670 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19675 SM00387 Histidine kinase-like ATPases BJD12_19675 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19675 SM00448 cheY-homologous receiver domain BJD12_19700 SM00387 Histidine kinase-like ATPases BJD12_19700 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19700 SM00448 cheY-homologous receiver domain BJD12_19710 SM00138 Methyltransferase, chemotaxis proteins BJD12_19715 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_19715 SM00387 Histidine kinase-like ATPases BJD12_19715 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19715 SM00448 cheY-homologous receiver domain BJD12_19720 SM00091 PAS domain BJD12_19720 SM00387 Histidine kinase-like ATPases BJD12_19720 SM00388 His Kinase A (phosphoacceptor) domain BJD12_19725 SM00448 cheY-homologous receiver domain BJD12_19745 SM00813 Alpha-L-arabinofuranosidase C-terminus BJD12_19765 SM00382 ATPases associated with a variety of cellular activities BJD12_19765 SM00962 SRP54-type protein, GTPase domain BJD12_19765 SM00963 SRP54-type protein, helical bundle domain BJD12_19810 SM00363 S4 RNA-binding domain BJD12_19825 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BJD12_19825 SM00534 ATPase domain of DNA mismatch repair MUTS family BJD12_19885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_19885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_19895 SM00812 Alpha-L-fucosidase BJD12_19920 SM00530 Helix-turn-helix XRE-family like proteins BJD12_19975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_19980 SM00838 Elongation factor G C-terminus BJD12_19995 SM00358 Double-stranded RNA binding motif BJD12_19995 SM00535 Ribonuclease III family BJD12_20015 SM00448 cheY-homologous receiver domain BJD12_20030 SM01118 BJD12_20030 BJD12_20065 SM00357 Cold shock protein domain BJD12_20080 SM00487 DEAD-like helicases superfamily BJD12_20080 SM00490 helicase superfamily c-terminal domain BJD12_20110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_20110 SM00267 diguanylate cyclase BJD12_20130 SM00869 Autotransporter beta-domain BJD12_20135 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BJD12_20445 SM00481 DNA polymerase alpha chain like domain BJD12_20485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_20515 SM00267 diguanylate cyclase BJD12_20540 SM00972 Spore Coat Protein U domain BJD12_20555 SM00972 Spore Coat Protein U domain BJD12_20565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_20590 SM01172 BJD12_20590 BJD12_20595 SM00710 Parallel beta-helix repeats BJD12_20595 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BJD12_20625 SM00434 DNA Topoisomerase IV BJD12_20630 SM00342 helix_turn_helix, arabinose operon control protein BJD12_20635 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_20665 SM01217 BJD12_20665 BJD12_20670 SM00631 BJD12_20670 BJD12_20700 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_20720 SM00382 ATPases associated with a variety of cellular activities BJD12_20725 SM00347 helix_turn_helix multiple antibiotic resistance protein BJD12_20750 SM00947 Carbonic anhydrase BJD12_20765 SM00357 Cold shock protein domain BJD12_20805 SM00460 Transglutaminase/protease-like homologues BJD12_20870 SM00822 BJD12_20870 BJD12_20880 SM00267 diguanylate cyclase BJD12_20890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BJD12_20890 SM00267 diguanylate cyclase BJD12_20955 SM00271 DnaJ molecular chaperone homology domain BJD12_20995 SM00382 ATPases associated with a variety of cellular activities BJD12_21020 SM00861 Transketolase, pyrimidine binding domain BJD12_21030 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BJD12_21045 SM00116 Domain in cystathionine beta-synthase and other proteins. BJD12_21045 SM01091 Transporter associated domain BJD12_21075 SM00382 ATPases associated with a variety of cellular activities BJD12_21080 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_21115 SM00354 helix_turn _helix lactose operon repressor BJD12_21135 SM01018 B12 binding domain BJD12_21145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BJD12_21165 SM00316 Ribosomal protein S1-like RNA-binding domain BJD12_21165 SM00357 Cold shock protein domain BJD12_21165 SM00955 BJD12_21165 BJD12_21175 SM00967 RNA 2'-O ribose methyltransferase substrate binding BJD12_21180 SM00267 diguanylate cyclase BJD12_21185 SM00479 BJD12_21185 BJD12_21210 SM00382 ATPases associated with a variety of cellular activities BJD12_21245 SM00947 Carbonic anhydrase BJD12_21255 SM00478 endonuclease III BJD12_21280 SM00450 Rhodanese Homology Domain BJD12_21290 SM00644 BJD12_21290 BJD12_21320 SM00382 ATPases associated with a variety of cellular activities BJD12_21325 SM00981 BJD12_21325 BJD12_21360 SM00479 BJD12_21360 BJD12_21385 SM00947 Carbonic anhydrase BJD12_21440 SM00771 ZipA, C-terminal domain (FtsZ-binding) BJD12_21455 SM00292 breast cancer carboxy-terminal domain BJD12_21455 SM00532 Ligase N family BJD12_21495 SM00434 DNA Topoisomerase IV BJD12_21500 SM00564 beta-propeller repeat BJD12_21540 SM00345 helix_turn_helix gluconate operon transcriptional repressor BJD12_21540 SM00866 BJD12_21540 BJD12_21565 SM00240 Forkhead associated domain BJD12_21585 SM00830 Chorismate mutase type II BJD12_21655 SM00530 Helix-turn-helix XRE-family like proteins BJD12_21780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_21780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BJD12_21785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_21785 SM00091 PAS domain BJD12_21785 SM00387 Histidine kinase-like ATPases BJD12_21785 SM00388 His Kinase A (phosphoacceptor) domain BJD12_21785 SM00448 cheY-homologous receiver domain BJD12_21790 SM00448 cheY-homologous receiver domain BJD12_21795 SM00382 ATPases associated with a variety of cellular activities BJD12_21800 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_21800 SM00091 PAS domain BJD12_21800 SM00387 Histidine kinase-like ATPases BJD12_21800 SM00388 His Kinase A (phosphoacceptor) domain BJD12_21800 SM00448 cheY-homologous receiver domain BJD12_21945 SM00729 Elongator protein 3, MiaB family, Radical SAM BJD12_21955 SM00382 ATPases associated with a variety of cellular activities BJD12_21980 SM01091 Transporter associated domain BJD12_22015 SM00387 Histidine kinase-like ATPases BJD12_22015 SM00433 TopoisomeraseII BJD12_22040 SM01192 BJD12_22040 BJD12_22040 SM01193 BJD12_22040 BJD12_22065 SM00463 Small MutS-related domain BJD12_22085 SM00257 Lysin motif BJD12_22095 SM01103 BJD12_22095 BJD12_22105 SM00382 ATPases associated with a variety of cellular activities BJD12_22150 SM00382 ATPases associated with a variety of cellular activities BJD12_22160 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BJD12_22175 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BJD12_22175 SM00091 PAS domain BJD12_22175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BJD12_22225 SM00670 Large family of predicted nucleotide-binding domains BJD12_22245 SM01130 BJD12_22245 BJD12_22270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BJD12_22315 SM00758 BJD12_22315 BJD12_22355 SM00646 BJD12_22355 BJD12_22465 SM00470 ParB-like nuclease domain BJD12_22630 SM00491 BJD12_22630 BJD12_22650 SM00448 cheY-homologous receiver domain BJD12_22695 SM00047 Lysozyme subfamily 2 BJD12_22730 SM00318 Staphylococcal nuclease homologues BJD12_22750 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BJD12_22765 SM00487 DEAD-like helicases superfamily BJD12_22765 SM00490 helicase superfamily c-terminal domain BJD12_22780 SM00480 DNA polymerase III beta subunit BJD12_22785 SM00470 ParB-like nuclease domain BJD12_22850 SM00487 DEAD-like helicases superfamily BJD12_22850 SM00490 helicase superfamily c-terminal domain BJD12_22855 SM00671 Sel1-like repeats. BJD12_22860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BJD12_23005 SM00422 helix_turn_helix, mercury resistance BJD12_23055 SM00226 Low molecular weight phosphatase family BJD12_23060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BJD12_23085 SM00530 Helix-turn-helix XRE-family like proteins BJD12_23135 SM00746 metallochaperone-like domain BJD12_23400 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BJD12_23400 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BJD12_23400 SM00493 BJD12_23400 BJD12_23465 SM00530 Helix-turn-helix XRE-family like proteins