BI313_00115 SM00470 ParB-like nuclease domain BI313_00280 SM00491 BI313_00280 BI313_00300 SM00448 cheY-homologous receiver domain BI313_00345 SM00047 Lysozyme subfamily 2 BI313_00380 SM00318 Staphylococcal nuclease homologues BI313_00405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_00420 SM00487 DEAD-like helicases superfamily BI313_00420 SM00490 helicase superfamily c-terminal domain BI313_00435 SM00480 DNA polymerase III beta subunit BI313_00440 SM00470 ParB-like nuclease domain BI313_00500 SM00487 DEAD-like helicases superfamily BI313_00500 SM00490 helicase superfamily c-terminal domain BI313_00505 SM00671 Sel1-like repeats. BI313_00510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_00755 SM00746 metallochaperone-like domain BI313_00830 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BI313_00835 SM00226 Low molecular weight phosphatase family BI313_00885 SM00422 helix_turn_helix, mercury resistance BI313_01090 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BI313_01090 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BI313_01090 SM00493 BI313_01090 BI313_01155 SM00530 Helix-turn-helix XRE-family like proteins BI313_01285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_01285 SM00267 diguanylate cyclase BI313_01350 SM00271 DnaJ molecular chaperone homology domain BI313_01390 SM00382 ATPases associated with a variety of cellular activities BI313_01415 SM00861 Transketolase, pyrimidine binding domain BI313_01425 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BI313_01440 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_01440 SM01091 Transporter associated domain BI313_01470 SM00382 ATPases associated with a variety of cellular activities BI313_01475 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_01520 SM00354 helix_turn _helix lactose operon repressor BI313_01540 SM01018 B12 binding domain BI313_01550 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BI313_01570 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_01570 SM00357 Cold shock protein domain BI313_01570 SM00955 BI313_01570 BI313_01580 SM00967 RNA 2'-O ribose methyltransferase substrate binding BI313_01585 SM00267 diguanylate cyclase BI313_01590 SM00479 BI313_01590 BI313_01605 SM00382 ATPases associated with a variety of cellular activities BI313_01640 SM00947 Carbonic anhydrase BI313_01650 SM00478 endonuclease III BI313_01675 SM00450 Rhodanese Homology Domain BI313_01685 SM00644 BI313_01685 BI313_01715 SM00382 ATPases associated with a variety of cellular activities BI313_01720 SM00981 BI313_01720 BI313_01755 SM00479 BI313_01755 BI313_01780 SM00947 Carbonic anhydrase BI313_01835 SM00771 ZipA, C-terminal domain (FtsZ-binding) BI313_01850 SM00292 breast cancer carboxy-terminal domain BI313_01850 SM00532 Ligase N family BI313_01885 SM00434 DNA Topoisomerase IV BI313_01890 SM00564 beta-propeller repeat BI313_01930 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_01930 SM00866 BI313_01930 BI313_01950 SM00240 Forkhead associated domain BI313_01970 SM00830 Chorismate mutase type II BI313_02035 SM00530 Helix-turn-helix XRE-family like proteins BI313_02040 SM00382 ATPases associated with a variety of cellular activities BI313_02240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_02240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_02245 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_02245 SM00091 PAS domain BI313_02245 SM00387 Histidine kinase-like ATPases BI313_02245 SM00388 His Kinase A (phosphoacceptor) domain BI313_02245 SM00448 cheY-homologous receiver domain BI313_02250 SM00448 cheY-homologous receiver domain BI313_02255 SM00382 ATPases associated with a variety of cellular activities BI313_02260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_02260 SM00091 PAS domain BI313_02260 SM00387 Histidine kinase-like ATPases BI313_02260 SM00388 His Kinase A (phosphoacceptor) domain BI313_02260 SM00448 cheY-homologous receiver domain BI313_02400 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_02410 SM00382 ATPases associated with a variety of cellular activities BI313_02435 SM01091 Transporter associated domain BI313_02470 SM00387 Histidine kinase-like ATPases BI313_02470 SM00433 TopoisomeraseII BI313_02495 SM01192 BI313_02495 BI313_02495 SM01193 BI313_02495 BI313_02520 SM00463 Small MutS-related domain BI313_02540 SM00257 Lysin motif BI313_02550 SM01103 BI313_02550 BI313_02560 SM00382 ATPases associated with a variety of cellular activities BI313_02605 SM00382 ATPases associated with a variety of cellular activities BI313_02615 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BI313_02630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_02630 SM00091 PAS domain BI313_02630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_02680 SM00670 Large family of predicted nucleotide-binding domains BI313_02700 SM01130 BI313_02700 BI313_02725 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BI313_02770 SM00758 BI313_02770 BI313_02810 SM00646 BI313_02810 BI313_02895 SM00052 Putative diguanylate phosphodiesterase BI313_02895 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_02895 SM00267 diguanylate cyclase BI313_02905 SM00448 cheY-homologous receiver domain BI313_02910 SM00387 Histidine kinase-like ATPases BI313_02920 SM00014 Acid phosphatase homologues BI313_02985 SM00528 Domain in histone-like proteins of HNS family BI313_03040 SM00248 ankyrin repeats BI313_03045 SM00901 BI313_03045 BI313_03100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03245 SM00100 Cyclic nucleotide-monophosphate binding domain BI313_03245 SM00419 helix_turn_helix, cAMP Regulatory protein BI313_03325 SM01007 Class II Aldolase and Adducin N-terminal domain BI313_03375 SM00841 Elongation factor P, C-terminal BI313_03375 SM01185 BI313_03375 BI313_03380 SM00822 BI313_03380 BI313_03400 SM00899 BI313_03400 BI313_03435 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BI313_03445 SM00851 MGS-like domain BI313_03445 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BI313_03475 SM00850 LytTr DNA-binding domain BI313_03480 SM00937 BI313_03480 BI313_03490 SM00448 cheY-homologous receiver domain BI313_03490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_03500 SM00073 Histidine Phosphotransfer domain BI313_03500 SM00387 Histidine kinase-like ATPases BI313_03500 SM00388 His Kinase A (phosphoacceptor) domain BI313_03500 SM00448 cheY-homologous receiver domain BI313_03525 SM00966 SpoVT / AbrB like domain BI313_03545 SM00052 Putative diguanylate phosphodiesterase BI313_03545 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_03545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_03545 SM00091 PAS domain BI313_03545 SM00267 diguanylate cyclase BI313_03550 SM00448 cheY-homologous receiver domain BI313_03560 SM00138 Methyltransferase, chemotaxis proteins BI313_03565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03575 SM00260 Two component signalling adaptor domain BI313_03590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03630 SM01049 BI313_03630 BI313_03640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_03640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_03645 SM00073 Histidine Phosphotransfer domain BI313_03645 SM00260 Two component signalling adaptor domain BI313_03645 SM00387 Histidine kinase-like ATPases BI313_03645 SM01231 BI313_03645 BI313_03650 SM00448 cheY-homologous receiver domain BI313_03660 SM00260 Two component signalling adaptor domain BI313_03695 SM00506 Appr-1"-p processing enzyme BI313_03755 SM00073 Histidine Phosphotransfer domain BI313_03755 SM00260 Two component signalling adaptor domain BI313_03755 SM00387 Histidine kinase-like ATPases BI313_03755 SM01231 BI313_03755 BI313_03765 SM00448 cheY-homologous receiver domain BI313_03780 SM00382 ATPases associated with a variety of cellular activities BI313_03780 SM00962 SRP54-type protein, GTPase domain BI313_03795 SM00267 diguanylate cyclase BI313_03800 SM00267 diguanylate cyclase BI313_03850 SM00382 ATPases associated with a variety of cellular activities BI313_03920 SM00822 BI313_03920 BI313_03945 SM00382 ATPases associated with a variety of cellular activities BI313_03950 SM00448 cheY-homologous receiver domain BI313_03960 SM00421 helix_turn_helix, Lux Regulon BI313_03960 SM00448 cheY-homologous receiver domain BI313_04000 SM00047 Lysozyme subfamily 2 BI313_04055 SM00260 Two component signalling adaptor domain BI313_04055 SM00448 cheY-homologous receiver domain BI313_04060 SM00858 BI313_04060 BI313_04075 SM00387 Histidine kinase-like ATPases BI313_04080 SM00052 Putative diguanylate phosphodiesterase BI313_04080 SM00267 diguanylate cyclase BI313_04080 SM00448 cheY-homologous receiver domain BI313_04085 SM00091 PAS domain BI313_04085 SM00387 Histidine kinase-like ATPases BI313_04090 SM00052 Putative diguanylate phosphodiesterase BI313_04090 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_04090 SM00091 PAS domain BI313_04090 SM00267 diguanylate cyclase BI313_04105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_04130 SM00382 ATPases associated with a variety of cellular activities BI313_04130 SM01086 C-terminal, D2-small domain, of ClpB protein BI313_04140 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_04160 SM00382 ATPases associated with a variety of cellular activities BI313_04160 SM00843 BI313_04160 BI313_04175 SM00382 ATPases associated with a variety of cellular activities BI313_04200 SM00562 BI313_04200 BI313_04210 SM00028 Tetratricopeptide repeats BI313_04225 SM00564 beta-propeller repeat BI313_04230 SM00382 ATPases associated with a variety of cellular activities BI313_04235 SM00852 Probable molybdopterin binding domain BI313_04240 SM00450 Rhodanese Homology Domain BI313_04265 SM00852 Probable molybdopterin binding domain BI313_04285 SM00448 cheY-homologous receiver domain BI313_04285 SM01012 BI313_04285 BI313_04315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BI313_04340 SM00052 Putative diguanylate phosphodiesterase BI313_04345 SM00869 Autotransporter beta-domain BI313_04350 SM00869 Autotransporter beta-domain BI313_04380 SM00318 Staphylococcal nuclease homologues BI313_04435 SM00822 BI313_04435 BI313_04510 SM00822 BI313_04510 BI313_04595 SM01301 BI313_04595 BI313_04755 SM00363 S4 RNA-binding domain BI313_04760 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_04765 SM00421 helix_turn_helix, Lux Regulon BI313_04765 SM00448 cheY-homologous receiver domain BI313_04770 SM00450 Rhodanese Homology Domain BI313_04790 SM00984 UDP binding domain BI313_04820 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BI313_04820 SM00465 GIY-YIG type nucleases (URI domain) BI313_04830 SM00226 Low molecular weight phosphatase family BI313_04845 SM00382 ATPases associated with a variety of cellular activities BI313_04860 SM00849 Metallo-beta-lactamase superfamily BI313_04875 SM00382 ATPases associated with a variety of cellular activities BI313_04930 SM00382 ATPases associated with a variety of cellular activities BI313_05015 SM00448 cheY-homologous receiver domain BI313_05020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_05020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_05020 SM00091 PAS domain BI313_05020 SM00387 Histidine kinase-like ATPases BI313_05020 SM00388 His Kinase A (phosphoacceptor) domain BI313_05020 SM00448 cheY-homologous receiver domain BI313_05025 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_05025 SM00732 Likely ribonuclease with RNase H fold. BI313_05095 SM00479 BI313_05095 BI313_05105 SM00529 Helix-turn-helix diphteria tox regulatory element BI313_05155 SM00342 helix_turn_helix, arabinose operon control protein BI313_05160 SM00387 Histidine kinase-like ATPases BI313_05165 SM00421 helix_turn_helix, Lux Regulon BI313_05165 SM00448 cheY-homologous receiver domain BI313_05170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_05185 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_05185 SM01240 BI313_05185 BI313_05215 SM00822 BI313_05215 BI313_05225 SM00028 Tetratricopeptide repeats BI313_05235 SM00411 bacterial (prokaryotic) histone like domain BI313_05240 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_05315 SM00354 helix_turn _helix lactose operon repressor BI313_05340 SM00363 S4 RNA-binding domain BI313_05370 SM00382 ATPases associated with a variety of cellular activities BI313_05435 SM00382 ATPases associated with a variety of cellular activities BI313_05440 SM00382 ATPases associated with a variety of cellular activities BI313_05470 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BI313_05480 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BI313_05500 SM00859 Semialdehyde dehydrogenase, NAD binding domain BI313_05545 SM00840 BI313_05545 BI313_05565 SM01234 BI313_05565 BI313_05645 SM00841 Elongation factor P, C-terminal BI313_05645 SM01185 BI313_05645 BI313_05655 SM00052 Putative diguanylate phosphodiesterase BI313_05655 SM00267 diguanylate cyclase BI313_05655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_05690 SM00382 ATPases associated with a variety of cellular activities BI313_05695 SM00382 ATPases associated with a variety of cellular activities BI313_05695 SM00487 DEAD-like helicases superfamily BI313_05695 SM00490 helicase superfamily c-terminal domain BI313_05725 SM00357 Cold shock protein domain BI313_05735 SM01322 BI313_05735 BI313_05745 SM00052 Putative diguanylate phosphodiesterase BI313_05745 SM00267 diguanylate cyclase BI313_05760 SM00822 BI313_05760 BI313_05780 SM00853 MutL C terminal dimerisation domain BI313_05780 SM01340 BI313_05780 BI313_05785 SM00646 BI313_05785 BI313_05825 SM00474 3'-5' exonuclease BI313_05840 SM00528 Domain in histone-like proteins of HNS family BI313_05895 SM00267 diguanylate cyclase BI313_05900 SM00260 Two component signalling adaptor domain BI313_05905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_05905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_05915 SM00487 DEAD-like helicases superfamily BI313_05915 SM00490 helicase superfamily c-terminal domain BI313_05970 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_05995 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_05995 SM01091 Transporter associated domain BI313_06030 SM00382 ATPases associated with a variety of cellular activities BI313_06065 SM01230 BI313_06065 BI313_06075 SM01230 BI313_06075 BI313_06085 SM00267 diguanylate cyclase BI313_06085 SM00448 cheY-homologous receiver domain BI313_06145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_06145 SM00091 PAS domain BI313_06145 SM00387 Histidine kinase-like ATPases BI313_06145 SM00388 His Kinase A (phosphoacceptor) domain BI313_06145 SM00448 cheY-homologous receiver domain BI313_06145 SM01079 BI313_06145 BI313_06150 SM00448 cheY-homologous receiver domain BI313_06150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_06265 SM01323 BI313_06265 BI313_06280 SM00344 helix_turn_helix ASNC type BI313_06350 SM00387 Histidine kinase-like ATPases BI313_06380 SM00944 Pro-kumamolisin, activation domain BI313_06430 SM01130 BI313_06430 BI313_06455 SM00342 helix_turn_helix, arabinose operon control protein BI313_06460 SM00382 ATPases associated with a variety of cellular activities BI313_06460 SM00962 SRP54-type protein, GTPase domain BI313_06460 SM00963 SRP54-type protein, helical bundle domain BI313_06470 SM00478 endonuclease III BI313_06480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_06480 SM00091 PAS domain BI313_06480 SM00387 Histidine kinase-like ATPases BI313_06480 SM00388 His Kinase A (phosphoacceptor) domain BI313_06480 SM00448 cheY-homologous receiver domain BI313_06530 SM00507 HNH nucleases BI313_06535 SM00861 Transketolase, pyrimidine binding domain BI313_06560 SM00849 Metallo-beta-lactamase superfamily BI313_06650 SM00422 helix_turn_helix, mercury resistance BI313_06655 SM00411 bacterial (prokaryotic) histone like domain BI313_06660 SM00873 B3/4 domain BI313_06660 SM00874 tRNA synthetase B5 domain BI313_06660 SM00896 Ferredoxin-fold anticodon binding domain BI313_06685 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BI313_06690 SM00354 helix_turn _helix lactose operon repressor BI313_06695 SM00642 Alpha-amylase domain BI313_06725 SM00642 Alpha-amylase domain BI313_06730 SM00382 ATPases associated with a variety of cellular activities BI313_06790 SM00487 DEAD-like helicases superfamily BI313_06790 SM00490 helicase superfamily c-terminal domain BI313_06870 SM01001 AIR carboxylase BI313_06890 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_06890 SM00322 K homology RNA-binding domain BI313_06895 SM01387 BI313_06895 BI313_06915 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_06915 SM00322 K homology RNA-binding domain BI313_06965 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BI313_06970 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BI313_07030 SM00052 Putative diguanylate phosphodiesterase BI313_07030 SM00267 diguanylate cyclase BI313_07030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_07100 SM00859 Semialdehyde dehydrogenase, NAD binding domain BI313_07140 SM00257 Lysin motif BI313_07175 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_07240 SM01160 BI313_07240 BI313_07300 SM00382 ATPases associated with a variety of cellular activities BI313_07300 SM00448 cheY-homologous receiver domain BI313_07305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_07305 SM00387 Histidine kinase-like ATPases BI313_07305 SM00388 His Kinase A (phosphoacceptor) domain BI313_07330 SM00098 Alkaline phosphatase homologues BI313_07335 SM00977 TilS substrate C-terminal domain BI313_07355 SM01351 BI313_07355 BI313_07390 SM00316 Ribosomal protein S1-like RNA-binding domain BI313_07485 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BI313_07520 SM00382 ATPases associated with a variety of cellular activities BI313_07570 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_07570 SM00267 diguanylate cyclase BI313_07575 SM00363 S4 RNA-binding domain BI313_07580 SM00052 Putative diguanylate phosphodiesterase BI313_07580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_07580 SM00091 PAS domain BI313_07580 SM00267 diguanylate cyclase BI313_07585 SM00487 DEAD-like helicases superfamily BI313_07585 SM00490 helicase superfamily c-terminal domain BI313_07630 SM00342 helix_turn_helix, arabinose operon control protein BI313_07630 SM00478 endonuclease III BI313_07630 SM01009 AlkA N-terminal domain BI313_07715 SM00342 helix_turn_helix, arabinose operon control protein BI313_07795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_07795 SM00387 Histidine kinase-like ATPases BI313_07795 SM00388 His Kinase A (phosphoacceptor) domain BI313_07800 SM00448 cheY-homologous receiver domain BI313_07800 SM00862 Transcriptional regulatory protein, C terminal BI313_07825 SM00487 DEAD-like helicases superfamily BI313_07825 SM00490 helicase superfamily c-terminal domain BI313_07825 SM00982 BI313_07825 BI313_07825 SM01058 CarD-like/TRCF domain BI313_07835 SM00073 Histidine Phosphotransfer domain BI313_07835 SM00260 Two component signalling adaptor domain BI313_07835 SM00387 Histidine kinase-like ATPases BI313_07835 SM01231 BI313_07835 BI313_07840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_07840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_07845 SM00260 Two component signalling adaptor domain BI313_07850 SM00052 Putative diguanylate phosphodiesterase BI313_07850 SM00448 cheY-homologous receiver domain BI313_07855 SM00138 Methyltransferase, chemotaxis proteins BI313_07860 SM00448 cheY-homologous receiver domain BI313_07870 SM00155 Phospholipase D. Active site motifs. BI313_07885 SM00855 Phosphoglycerate mutase family BI313_07945 SM00248 ankyrin repeats BI313_07980 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BI313_07995 SM00829 Enoylreductase BI313_08065 SM00732 Likely ribonuclease with RNase H fold. BI313_08125 SM00411 bacterial (prokaryotic) histone like domain BI313_08155 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BI313_08170 SM00382 ATPases associated with a variety of cellular activities BI313_08205 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BI313_08210 SM00671 Sel1-like repeats. BI313_08350 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_08370 SM00382 ATPases associated with a variety of cellular activities BI313_08415 SM00924 MgtE intracellular N domain BI313_08440 SM00656 BI313_08440 BI313_08450 SM00421 helix_turn_helix, Lux Regulon BI313_08480 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BI313_08500 SM00422 helix_turn_helix, mercury resistance BI313_08580 SM00387 Histidine kinase-like ATPases BI313_08580 SM00388 His Kinase A (phosphoacceptor) domain BI313_08580 SM00448 cheY-homologous receiver domain BI313_08585 SM00387 Histidine kinase-like ATPases BI313_08585 SM00388 His Kinase A (phosphoacceptor) domain BI313_08585 SM00448 cheY-homologous receiver domain BI313_08590 SM00387 Histidine kinase-like ATPases BI313_08590 SM00388 His Kinase A (phosphoacceptor) domain BI313_08590 SM00448 cheY-homologous receiver domain BI313_08595 SM00867 YceI-like domain BI313_08605 SM00867 YceI-like domain BI313_08610 SM00357 Cold shock protein domain BI313_08670 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_08755 SM00244 prohibitin homologues BI313_08800 SM00812 Alpha-L-fucosidase BI313_08805 SM00636 BI313_08805 BI313_08820 SM00758 BI313_08820 BI313_08820 SM01217 BI313_08820 BI313_08825 SM01149 BI313_08825 BI313_08865 SM00369 Leucine-rich repeats, typical (most populated) subfamily BI313_08880 SM00327 von Willebrand factor (vWF) type A domain BI313_08900 SM00260 Two component signalling adaptor domain BI313_08910 SM00073 Histidine Phosphotransfer domain BI313_08910 SM00260 Two component signalling adaptor domain BI313_08910 SM00387 Histidine kinase-like ATPases BI313_08910 SM00448 cheY-homologous receiver domain BI313_08910 SM01231 BI313_08910 BI313_08915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_08920 SM00260 Two component signalling adaptor domain BI313_08925 SM00448 cheY-homologous receiver domain BI313_08930 SM00448 cheY-homologous receiver domain BI313_08955 SM00491 BI313_08955 BI313_08980 SM00954 Region found in RelA / SpoT proteins BI313_09030 SM00382 ATPases associated with a variety of cellular activities BI313_09030 SM00487 DEAD-like helicases superfamily BI313_09030 SM00490 helicase superfamily c-terminal domain BI313_09030 SM00847 Helicase associated domain (HA2) Add an annotation BI313_09040 SM00341 Helicase and RNase D C-terminal BI313_09040 SM00487 DEAD-like helicases superfamily BI313_09040 SM00490 helicase superfamily c-terminal domain BI313_09040 SM00956 BI313_09040 BI313_09050 SM00448 cheY-homologous receiver domain BI313_09070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_09070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_09075 SM00448 cheY-homologous receiver domain BI313_09080 SM00091 PAS domain BI313_09080 SM00911 HWE histidine kinase BI313_09105 SM00028 Tetratricopeptide repeats BI313_09140 SM00382 ATPases associated with a variety of cellular activities BI313_09145 SM00860 SMI1 / KNR4 family BI313_09155 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BI313_09190 SM00834 Putative regulatory protein BI313_09215 SM00849 Metallo-beta-lactamase superfamily BI313_09220 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BI313_09275 SM00382 ATPases associated with a variety of cellular activities BI313_09360 SM00855 Phosphoglycerate mutase family BI313_09415 SM00382 ATPases associated with a variety of cellular activities BI313_09415 SM01086 C-terminal, D2-small domain, of ClpB protein BI313_09475 SM00564 beta-propeller repeat BI313_09480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_09525 SM00881 CoA binding domain BI313_09535 SM00387 Histidine kinase-like ATPases BI313_09535 SM00388 His Kinase A (phosphoacceptor) domain BI313_09540 SM00382 ATPases associated with a variety of cellular activities BI313_09540 SM00448 cheY-homologous receiver domain BI313_09595 SM00387 Histidine kinase-like ATPases BI313_09595 SM00388 His Kinase A (phosphoacceptor) domain BI313_09600 SM00448 cheY-homologous receiver domain BI313_09600 SM00862 Transcriptional regulatory protein, C terminal BI313_09615 SM00642 Alpha-amylase domain BI313_09620 SM00528 Domain in histone-like proteins of HNS family BI313_09680 SM00530 Helix-turn-helix XRE-family like proteins BI313_09730 SM00331 Sigma factor PP2C-like phosphatases BI313_09730 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BI313_09735 SM00220 Serine/Threonine protein kinases, catalytic domain BI313_09740 SM00220 Serine/Threonine protein kinases, catalytic domain BI313_09745 SM00248 ankyrin repeats BI313_09765 SM00382 ATPases associated with a variety of cellular activities BI313_09775 SM00528 Domain in histone-like proteins of HNS family BI313_09895 SM00530 Helix-turn-helix XRE-family like proteins BI313_09930 SM00869 Autotransporter beta-domain BI313_09980 SM00354 helix_turn _helix lactose operon repressor BI313_10020 SM00967 RNA 2'-O ribose methyltransferase substrate binding BI313_10090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_10090 SM00387 Histidine kinase-like ATPases BI313_10120 SM00506 Appr-1"-p processing enzyme BI313_10165 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BI313_10195 SM00849 Metallo-beta-lactamase superfamily BI313_10210 SM00382 ATPases associated with a variety of cellular activities BI313_10275 SM00861 Transketolase, pyrimidine binding domain BI313_10290 SM00028 Tetratricopeptide repeats BI313_10290 SM00327 von Willebrand factor (vWF) type A domain BI313_10295 SM00327 von Willebrand factor (vWF) type A domain BI313_10310 SM00382 ATPases associated with a variety of cellular activities BI313_10315 SM00965 Secretin and TonB N terminus short domain BI313_10365 SM00487 DEAD-like helicases superfamily BI313_10365 SM00490 helicase superfamily c-terminal domain BI313_10375 SM00858 BI313_10375 BI313_10385 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BI313_10400 SM01130 BI313_10400 BI313_10415 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_10415 SM00954 Region found in RelA / SpoT proteins BI313_10450 SM00382 ATPases associated with a variety of cellular activities BI313_10465 SM01409 BI313_10465 BI313_10470 SM00072 Guanylate kinase homologues. BI313_10495 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_10525 SM01011 Aminopeptidase P, N-terminal domain BI313_10630 SM00382 ATPases associated with a variety of cellular activities BI313_10760 SM01126 BI313_10760 BI313_10890 SM00464 Found in ATP-dependent protease La (LON) BI313_11045 SM00342 helix_turn_helix, arabinose operon control protein BI313_11050 SM00862 Transcriptional regulatory protein, C terminal BI313_11065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_11095 SM00917 LeuA allosteric (dimerisation) domain BI313_11105 SM01329 BI313_11105 BI313_11130 SM00267 diguanylate cyclase BI313_11185 SM00919 Malic enzyme, NAD binding domain BI313_11185 SM01274 BI313_11185 BI313_11200 SM00387 Histidine kinase-like ATPases BI313_11200 SM00388 His Kinase A (phosphoacceptor) domain BI313_11200 SM00448 cheY-homologous receiver domain BI313_11225 SM00421 helix_turn_helix, Lux Regulon BI313_11225 SM00448 cheY-homologous receiver domain BI313_11235 SM00387 Histidine kinase-like ATPases BI313_11235 SM00388 His Kinase A (phosphoacceptor) domain BI313_11240 SM00448 cheY-homologous receiver domain BI313_11240 SM00862 Transcriptional regulatory protein, C terminal BI313_11255 SM00822 BI313_11255 BI313_11260 SM00354 helix_turn _helix lactose operon repressor BI313_11275 SM00642 Alpha-amylase domain BI313_11285 SM01154 BI313_11285 BI313_11315 SM00450 Rhodanese Homology Domain BI313_11395 SM00829 Enoylreductase BI313_11420 SM00448 cheY-homologous receiver domain BI313_11420 SM00862 Transcriptional regulatory protein, C terminal BI313_11425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_11425 SM00387 Histidine kinase-like ATPases BI313_11425 SM00388 His Kinase A (phosphoacceptor) domain BI313_11445 SM00342 helix_turn_helix, arabinose operon control protein BI313_11450 SM00849 Metallo-beta-lactamase superfamily BI313_11500 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_11520 SM00656 BI313_11520 BI313_11555 SM00528 Domain in histone-like proteins of HNS family BI313_11570 SM00382 ATPases associated with a variety of cellular activities BI313_11605 SM00882 Coenzyme A transferase BI313_11610 SM00882 Coenzyme A transferase BI313_11625 SM00984 UDP binding domain BI313_11650 SM00893 Electron transfer flavoprotein domain BI313_11655 SM00893 Electron transfer flavoprotein domain BI313_11700 SM00382 ATPases associated with a variety of cellular activities BI313_11715 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_11760 SM00487 DEAD-like helicases superfamily BI313_11760 SM00490 helicase superfamily c-terminal domain BI313_11780 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_11815 SM00825 Beta-ketoacyl synthase BI313_11895 SM00382 ATPases associated with a variety of cellular activities BI313_11915 SM00382 ATPases associated with a variety of cellular activities BI313_11915 SM00448 cheY-homologous receiver domain BI313_11920 SM00387 Histidine kinase-like ATPases BI313_11940 SM00830 Chorismate mutase type II BI313_11950 SM00382 ATPases associated with a variety of cellular activities BI313_12015 SM00986 Uracil DNA glycosylase superfamily BI313_12015 SM00987 UreE urease accessory protein, C-terminal domain BI313_12040 SM00382 ATPases associated with a variety of cellular activities BI313_12040 SM00930 BI313_12040 BI313_12060 SM00387 Histidine kinase-like ATPases BI313_12060 SM00388 His Kinase A (phosphoacceptor) domain BI313_12060 SM00448 cheY-homologous receiver domain BI313_12110 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_12110 SM00091 PAS domain BI313_12110 SM00387 Histidine kinase-like ATPases BI313_12110 SM00388 His Kinase A (phosphoacceptor) domain BI313_12110 SM00448 cheY-homologous receiver domain BI313_12130 SM01005 Alanine racemase, C-terminal domain BI313_12140 SM00344 helix_turn_helix ASNC type BI313_12195 SM00382 ATPases associated with a variety of cellular activities BI313_12220 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BI313_12225 SM00986 Uracil DNA glycosylase superfamily BI313_12225 SM00987 UreE urease accessory protein, C-terminal domain BI313_12235 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_12295 SM00448 cheY-homologous receiver domain BI313_12295 SM00850 LytTr DNA-binding domain BI313_12300 SM00387 Histidine kinase-like ATPases BI313_12335 SM00091 PAS domain BI313_12335 SM00138 Methyltransferase, chemotaxis proteins BI313_12335 SM00911 HWE histidine kinase BI313_12340 SM00448 cheY-homologous receiver domain BI313_12350 SM00382 ATPases associated with a variety of cellular activities BI313_12350 SM00448 cheY-homologous receiver domain BI313_12425 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BI313_12470 SM00382 ATPases associated with a variety of cellular activities BI313_12490 SM00477 DNA/RNA non-specific endonuclease BI313_12490 SM00892 DNA/RNA non-specific endonuclease BI313_12560 SM00342 helix_turn_helix, arabinose operon control protein BI313_12715 SM00493 BI313_12715 BI313_12840 SM00257 Lysin motif BI313_12865 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BI313_12865 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BI313_12865 SM00493 BI313_12865 BI313_12920 SM00487 DEAD-like helicases superfamily BI313_12920 SM00490 helicase superfamily c-terminal domain BI313_12955 SM00986 Uracil DNA glycosylase superfamily BI313_12955 SM00987 UreE urease accessory protein, C-terminal domain BI313_12960 SM00448 cheY-homologous receiver domain BI313_12970 SM00382 ATPases associated with a variety of cellular activities BI313_12975 SM00487 DEAD-like helicases superfamily BI313_12975 SM00490 helicase superfamily c-terminal domain BI313_12985 SM00357 Cold shock protein domain BI313_12985 SM00382 ATPases associated with a variety of cellular activities BI313_12985 SM00959 Rho termination factor, N-terminal domain BI313_13020 SM00257 Lysin motif BI313_13060 SM01150 BI313_13060 BI313_13105 SM00644 BI313_13105 BI313_13115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BI313_13150 SM01217 BI313_13150 BI313_13155 SM00905 Dihydroneopterin aldolase BI313_13180 SM00400 zinc finger BI313_13180 SM00493 BI313_13180 BI313_13180 SM00766 DNA primase DnaG DnaB-binding BI313_13285 SM00363 S4 RNA-binding domain BI313_13335 SM00470 ParB-like nuclease domain BI313_13360 SM01259 BI313_13360 BI313_13390 SM00836 DALR anticodon binding domain BI313_13390 SM01016 Arginyl tRNA synthetase N terminal dom BI313_13430 SM00823 Phosphopantetheine attachment site BI313_13430 SM00824 Thioesterase BI313_13470 SM00938 Nitrogen regulatory protein P-II BI313_13480 SM00382 ATPases associated with a variety of cellular activities BI313_13495 SM00052 Putative diguanylate phosphodiesterase BI313_13570 SM00448 cheY-homologous receiver domain BI313_13570 SM00862 Transcriptional regulatory protein, C terminal BI313_13575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_13575 SM00387 Histidine kinase-like ATPases BI313_13575 SM00388 His Kinase A (phosphoacceptor) domain BI313_13595 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_13640 SM01060 BI313_13640 BI313_13655 SM00421 helix_turn_helix, Lux Regulon BI313_13655 SM00448 cheY-homologous receiver domain BI313_13675 SM00382 ATPases associated with a variety of cellular activities BI313_13715 SM00849 Metallo-beta-lactamase superfamily BI313_13745 SM00960 Roadblock/LC7 domain BI313_13810 SM00387 Histidine kinase-like ATPases BI313_13815 SM00448 cheY-homologous receiver domain BI313_13815 SM00862 Transcriptional regulatory protein, C terminal BI313_13840 SM00248 ankyrin repeats BI313_13845 SM01060 BI313_13845 BI313_13850 SM00491 BI313_13850 BI313_13880 SM01004 Delta-aminolevulinic acid dehydratase BI313_13930 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BI313_13950 SM00382 ATPases associated with a variety of cellular activities BI313_13960 SM00530 Helix-turn-helix XRE-family like proteins BI313_13990 SM00382 ATPases associated with a variety of cellular activities BI313_14060 SM00881 CoA binding domain BI313_14065 SM00116 Domain in cystathionine beta-synthase and other proteins. BI313_14065 SM00924 MgtE intracellular N domain BI313_14085 SM00226 Low molecular weight phosphatase family BI313_14090 SM00248 ankyrin repeats BI313_14100 SM00825 Beta-ketoacyl synthase BI313_14135 SM00822 BI313_14135 BI313_14165 SM00563 Phosphate acyltransferases BI313_14230 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BI313_14230 SM00474 3'-5' exonuclease BI313_14230 SM00475 5'-3' exonuclease BI313_14230 SM00482 DNA polymerase A domain BI313_14245 SM00912 haemagglutination activity domain BI313_14265 SM00331 Sigma factor PP2C-like phosphatases BI313_14265 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BI313_14300 SM00240 Forkhead associated domain BI313_14320 SM00028 Tetratricopeptide repeats BI313_14330 SM00220 Serine/Threonine protein kinases, catalytic domain BI313_14380 SM00382 ATPases associated with a variety of cellular activities BI313_14380 SM01086 C-terminal, D2-small domain, of ClpB protein BI313_14425 SM00342 helix_turn_helix, arabinose operon control protein BI313_14435 SM01266 BI313_14435 BI313_14455 SM00155 Phospholipase D. Active site motifs. BI313_14575 SM00421 helix_turn_helix, Lux Regulon BI313_14575 SM00448 cheY-homologous receiver domain BI313_14625 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BI313_14640 SM00346 helix_turn_helix isocitrate lyase regulation BI313_14650 SM00091 PAS domain BI313_14650 SM00387 Histidine kinase-like ATPases BI313_14650 SM00388 His Kinase A (phosphoacceptor) domain BI313_14650 SM00448 cheY-homologous receiver domain BI313_14680 SM00564 beta-propeller repeat BI313_14730 SM00382 ATPases associated with a variety of cellular activities BI313_14815 SM00354 helix_turn _helix lactose operon repressor BI313_14830 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BI313_14840 SM00758 BI313_14840 BI313_14840 SM01217 BI313_14840 BI313_14870 SM00612 BI313_14870 BI313_14880 SM00633 Glycosyl hydrolase family 10 BI313_14895 SM00633 Glycosyl hydrolase family 10 BI313_14950 SM00829 Enoylreductase BI313_14955 SM00563 Phosphate acyltransferases BI313_14965 SM00354 helix_turn _helix lactose operon repressor BI313_14985 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BI313_15020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_15020 SM00388 His Kinase A (phosphoacceptor) domain BI313_15035 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BI313_15035 SM01232 BI313_15035 BI313_15070 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_15125 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_15160 SM00155 Phospholipase D. Active site motifs. BI313_15255 SM00530 Helix-turn-helix XRE-family like proteins BI313_15285 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BI313_15285 SM00869 Autotransporter beta-domain BI313_15315 SM00382 ATPases associated with a variety of cellular activities BI313_15345 SM00901 BI313_15345 BI313_15365 SM00829 Enoylreductase BI313_15410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_15410 SM00091 PAS domain BI313_15410 SM00267 diguanylate cyclase BI313_15470 SM00014 Acid phosphatase homologues BI313_15485 SM00028 Tetratricopeptide repeats BI313_15515 SM00382 ATPases associated with a variety of cellular activities BI313_15515 SM00760 Bacterial dnaA protein helix-turn-helix domain BI313_15520 SM00480 DNA polymerase III beta subunit BI313_15530 SM00387 Histidine kinase-like ATPases BI313_15530 SM00433 TopoisomeraseII BI313_15545 SM00028 Tetratricopeptide repeats BI313_15595 SM00155 Phospholipase D. Active site motifs. BI313_15600 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_15630 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_15630 SM00245 tail specific protease BI313_15675 SM00829 Enoylreductase BI313_15800 SM00487 DEAD-like helicases superfamily BI313_15800 SM00490 helicase superfamily c-terminal domain BI313_15835 SM00822 BI313_15835 BI313_15905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_15905 SM00387 Histidine kinase-like ATPases BI313_15905 SM00388 His Kinase A (phosphoacceptor) domain BI313_15905 SM00448 cheY-homologous receiver domain BI313_16110 SM00829 Enoylreductase BI313_16130 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BI313_16165 SM00421 helix_turn_helix, Lux Regulon BI313_16165 SM00448 cheY-homologous receiver domain BI313_16175 SM00028 Tetratricopeptide repeats BI313_16175 SM00862 Transcriptional regulatory protein, C terminal BI313_16315 SM00642 Alpha-amylase domain BI313_16320 SM00642 Alpha-amylase domain BI313_16325 SM00642 Alpha-amylase domain BI313_16400 SM00354 helix_turn _helix lactose operon repressor BI313_16445 SM00344 helix_turn_helix ASNC type BI313_16470 SM00382 ATPases associated with a variety of cellular activities BI313_16485 SM00382 ATPases associated with a variety of cellular activities BI313_16535 SM00855 Phosphoglycerate mutase family BI313_16540 SM00867 YceI-like domain BI313_16545 SM00155 Phospholipase D. Active site motifs. BI313_16560 SM00563 Phosphate acyltransferases BI313_16570 SM00028 Tetratricopeptide repeats BI313_16595 SM01230 BI313_16595 BI313_16600 SM00938 Nitrogen regulatory protein P-II BI313_16610 SM00387 Histidine kinase-like ATPases BI313_16610 SM00388 His Kinase A (phosphoacceptor) domain BI313_16615 SM00382 ATPases associated with a variety of cellular activities BI313_16615 SM00448 cheY-homologous receiver domain BI313_16685 SM00450 Rhodanese Homology Domain BI313_16710 SM00387 Histidine kinase-like ATPases BI313_16710 SM00388 His Kinase A (phosphoacceptor) domain BI313_16715 SM00382 ATPases associated with a variety of cellular activities BI313_16715 SM00448 cheY-homologous receiver domain BI313_16825 SM00563 Phosphate acyltransferases BI313_16870 SM00342 helix_turn_helix, arabinose operon control protein BI313_16895 SM00100 Cyclic nucleotide-monophosphate binding domain BI313_16895 SM00267 diguanylate cyclase BI313_16920 SM00878 Biotin carboxylase C-terminal domain BI313_16945 SM00953 BI313_16945 BI313_16990 SM00833 Cobalamin synthesis protein cobW C-terminal domain BI313_17020 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_17060 SM00829 Enoylreductase BI313_17085 SM00487 DEAD-like helicases superfamily BI313_17085 SM00490 helicase superfamily c-terminal domain BI313_17085 SM00847 Helicase associated domain (HA2) Add an annotation BI313_17090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_17090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_17100 SM00095 Transthyretin BI313_17150 SM00028 Tetratricopeptide repeats BI313_17265 SM00342 helix_turn_helix, arabinose operon control protein BI313_17325 SM00829 Enoylreductase BI313_17330 SM00829 Enoylreductase BI313_17450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_17455 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_17480 SM00342 helix_turn_helix, arabinose operon control protein BI313_17510 SM00420 helix_turn_helix, Deoxyribose operon repressor BI313_17510 SM01134 BI313_17510 BI313_17520 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_17520 SM00895 BI313_17520 BI313_17530 SM00882 Coenzyme A transferase BI313_17535 SM00882 Coenzyme A transferase BI313_17555 SM00998 Adenylosuccinate lyase C-terminus BI313_17575 SM00346 helix_turn_helix isocitrate lyase regulation BI313_17580 SM00090 RIO-like kinase BI313_17595 SM01228 BI313_17595 BI313_17650 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_17650 SM00876 Biotin and Thiamin Synthesis associated domain BI313_17680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BI313_17680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_17720 SM00267 diguanylate cyclase BI313_17730 SM00642 Alpha-amylase domain BI313_17735 SM00642 Alpha-amylase domain BI313_17745 SM00642 Alpha-amylase domain BI313_17755 SM00642 Alpha-amylase domain BI313_17810 SM00822 BI313_17810 BI313_17825 SM00487 DEAD-like helicases superfamily BI313_17825 SM00490 helicase superfamily c-terminal domain BI313_17845 SM00326 Src homology 3 domains BI313_17850 SM00861 Transketolase, pyrimidine binding domain BI313_17860 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BI313_17880 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_17980 SM00271 DnaJ molecular chaperone homology domain BI313_18005 SM00046 Diacylglycerol kinase catalytic domain (presumed) BI313_18025 SM00487 DEAD-like helicases superfamily BI313_18060 SM00903 Flavin reductase like domain BI313_18080 SM00100 Cyclic nucleotide-monophosphate binding domain BI313_18080 SM00419 helix_turn_helix, cAMP Regulatory protein BI313_18135 SM00073 Histidine Phosphotransfer domain BI313_18135 SM00387 Histidine kinase-like ATPases BI313_18135 SM00388 His Kinase A (phosphoacceptor) domain BI313_18135 SM00448 cheY-homologous receiver domain BI313_18140 SM00052 Putative diguanylate phosphodiesterase BI313_18140 SM00267 diguanylate cyclase BI313_18140 SM00448 cheY-homologous receiver domain BI313_18185 SM00563 Phosphate acyltransferases BI313_18205 SM01209 BI313_18205 BI313_18205 SM01210 BI313_18205 BI313_18215 SM00798 AICARFT/IMPCHase bienzyme BI313_18215 SM00851 MGS-like domain BI313_18230 SM00195 Dual specificity phosphatase, catalytic domain BI313_18250 SM00563 Phosphate acyltransferases BI313_18275 SM00530 Helix-turn-helix XRE-family like proteins BI313_18300 SM00878 Biotin carboxylase C-terminal domain BI313_18335 SM00883 Chaperonin 10 Kd subunit BI313_18440 SM00867 YceI-like domain BI313_18485 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BI313_18495 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_18495 SM00895 BI313_18495 BI313_18520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_18520 SM00331 Sigma factor PP2C-like phosphatases BI313_18690 SM00267 diguanylate cyclase BI313_18780 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BI313_18780 SM01232 BI313_18780 BI313_18795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_18805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_18805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_18805 SM01049 BI313_18805 BI313_18810 SM00637 BI313_18810 BI313_18820 SM00267 diguanylate cyclase BI313_18865 SM00448 cheY-homologous receiver domain BI313_18865 SM00850 LytTr DNA-binding domain BI313_18955 SM00382 ATPases associated with a variety of cellular activities BI313_18955 SM01086 C-terminal, D2-small domain, of ClpB protein BI313_18990 SM00267 diguanylate cyclase BI313_18995 SM01263 BI313_18995 BI313_19010 SM00564 beta-propeller repeat BI313_19015 SM00062 Bacterial periplasmic substrate-binding proteins BI313_19015 SM00248 ankyrin repeats BI313_19040 SM00382 ATPases associated with a variety of cellular activities BI313_19050 SM00268 Actin BI313_19075 SM00710 Parallel beta-helix repeats BI313_19090 SM00936 Penicillin-binding protein 5, C-terminal domain BI313_19115 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_19120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_19120 SM00245 tail specific protease BI313_19175 SM01350 BI313_19175 BI313_19185 SM00749 bacterial OsmY and nodulation domain BI313_19190 SM00387 Histidine kinase-like ATPases BI313_19190 SM00388 His Kinase A (phosphoacceptor) domain BI313_19195 SM00448 cheY-homologous receiver domain BI313_19200 SM00387 Histidine kinase-like ATPases BI313_19200 SM00388 His Kinase A (phosphoacceptor) domain BI313_19200 SM00448 cheY-homologous receiver domain BI313_19230 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BI313_19255 SM00382 ATPases associated with a variety of cellular activities BI313_19305 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_19305 SM00866 BI313_19305 BI313_19315 SM00354 helix_turn _helix lactose operon repressor BI313_19330 SM00245 tail specific protease BI313_19410 SM01211 BI313_19410 BI313_19430 SM00382 ATPases associated with a variety of cellular activities BI313_19500 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_19500 SM00866 BI313_19500 BI313_19575 SM00028 Tetratricopeptide repeats BI313_19600 SM00382 ATPases associated with a variety of cellular activities BI313_19670 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BI313_19700 SM00387 Histidine kinase-like ATPases BI313_19700 SM00388 His Kinase A (phosphoacceptor) domain BI313_19705 SM00448 cheY-homologous receiver domain BI313_19705 SM00862 Transcriptional regulatory protein, C terminal BI313_19820 SM00842 Cell division protein FtsA BI313_19825 SM00864 Tubulin/FtsZ family, GTPase domain BI313_19825 SM00865 Tubulin/FtsZ family, C-terminal domain BI313_19845 SM00957 SecA DEAD-like domain BI313_19845 SM00958 SecA preprotein cross-linking domain BI313_19850 SM00869 Autotransporter beta-domain BI313_19885 SM00829 Enoylreductase BI313_19915 SM00642 Alpha-amylase domain BI313_19950 SM00996 S-adenosyl-L-homocysteine hydrolase BI313_19950 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BI313_20065 SM00382 ATPases associated with a variety of cellular activities BI313_20085 SM00382 ATPases associated with a variety of cellular activities BI313_20095 SM00448 cheY-homologous receiver domain BI313_20095 SM00862 Transcriptional regulatory protein, C terminal BI313_20100 SM00387 Histidine kinase-like ATPases BI313_20100 SM00388 His Kinase A (phosphoacceptor) domain BI313_20160 SM00650 Ribosomal RNA adenine dimethylases BI313_20220 SM00345 helix_turn_helix gluconate operon transcriptional repressor BI313_20220 SM00895 BI313_20220 BI313_20255 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_20320 SM00448 cheY-homologous receiver domain BI313_20325 SM00387 Histidine kinase-like ATPases BI313_20325 SM00388 His Kinase A (phosphoacceptor) domain BI313_20325 SM00448 cheY-homologous receiver domain BI313_20330 SM00421 helix_turn_helix, Lux Regulon BI313_20395 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BI313_20395 SM00475 5'-3' exonuclease BI313_20430 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BI313_20430 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BI313_20540 SM00852 Probable molybdopterin binding domain BI313_20545 SM00028 Tetratricopeptide repeats BI313_20550 SM00937 BI313_20550 BI313_20560 SM00028 Tetratricopeptide repeats BI313_20580 SM01400 BI313_20580 BI313_20670 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BI313_20670 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BI313_20675 SM00649 Ribosomal protein L11/L12 BI313_20700 SM00663 RNA polymerase I subunit A N-terminus BI313_20715 SM00838 Elongation factor G C-terminus BI313_20715 SM00889 Elongation factor G, domain IV BI313_20725 SM01403 BI313_20725 BI313_20745 SM01382 BI313_20745 BI313_20745 SM01383 BI313_20745 BI313_20760 SM00322 K homology RNA-binding domain BI313_20780 SM01374 BI313_20780 BI313_20785 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BI313_20845 SM00363 S4 RNA-binding domain BI313_20845 SM01390 BI313_20845 BI313_20850 SM00662 RNA polymerases D BI313_20890 SM00838 Elongation factor G C-terminus BI313_20925 SM00829 Enoylreductase BI313_20945 SM00363 S4 RNA-binding domain BI313_20975 SM00382 ATPases associated with a variety of cellular activities BI313_20985 SM00829 Enoylreductase BI313_21005 SM00855 Phosphoglycerate mutase family BI313_21055 SM00014 Acid phosphatase homologues BI313_21075 SM00387 Histidine kinase-like ATPases BI313_21075 SM00388 His Kinase A (phosphoacceptor) domain BI313_21080 SM00448 cheY-homologous receiver domain BI313_21080 SM00862 Transcriptional regulatory protein, C terminal BI313_21100 SM01329 BI313_21100 BI313_21135 SM00091 PAS domain BI313_21135 SM00387 Histidine kinase-like ATPases BI313_21155 SM00382 ATPases associated with a variety of cellular activities BI313_21155 SM00994 ClpX C4-type zinc finger BI313_21155 SM01086 C-terminal, D2-small domain, of ClpB protein BI313_21160 SM00382 ATPases associated with a variety of cellular activities BI313_21160 SM00464 Found in ATP-dependent protease La (LON) BI313_21165 SM00411 bacterial (prokaryotic) histone like domain BI313_21190 SM00257 Lysin motif BI313_21195 SM00849 Metallo-beta-lactamase superfamily BI313_21210 SM00479 BI313_21210 BI313_21215 SM00331 Sigma factor PP2C-like phosphatases BI313_21215 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BI313_21240 SM00849 Metallo-beta-lactamase superfamily BI313_21245 SM00729 Elongator protein 3, MiaB family, Radical SAM BI313_21275 SM00382 ATPases associated with a variety of cellular activities BI313_21285 SM00493 BI313_21285 BI313_21300 SM00460 Transglutaminase/protease-like homologues BI313_21350 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BI313_21355 SM00822 BI313_21355 BI313_21365 SM00825 Beta-ketoacyl synthase BI313_21400 SM00382 ATPases associated with a variety of cellular activities BI313_21445 SM01359 BI313_21445 BI313_21445 SM01360 BI313_21445 BI313_21490 SM00271 DnaJ molecular chaperone homology domain BI313_21495 SM00448 cheY-homologous receiver domain BI313_21500 SM00244 prohibitin homologues BI313_21505 SM00244 prohibitin homologues BI313_21510 SM00788 Adenylosuccinate synthetase BI313_21585 SM00487 DEAD-like helicases superfamily BI313_21620 SM00855 Phosphoglycerate mutase family BI313_21675 SM00052 Putative diguanylate phosphodiesterase BI313_21705 SM01217 BI313_21705 BI313_21720 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BI313_21725 SM01092 CO dehydrogenase flavoprotein C-terminal domain BI313_21740 SM00974 BI313_21740 BI313_21775 SM00481 DNA polymerase alpha chain like domain BI313_21815 SM00091 PAS domain BI313_21815 SM00342 helix_turn_helix, arabinose operon control protein BI313_21825 SM01060 BI313_21825 BI313_21880 SM00448 cheY-homologous receiver domain BI313_21880 SM00862 Transcriptional regulatory protein, C terminal BI313_21885 SM00387 Histidine kinase-like ATPases BI313_21885 SM00388 His Kinase A (phosphoacceptor) domain BI313_21920 SM00421 helix_turn_helix, Lux Regulon BI313_21920 SM00448 cheY-homologous receiver domain BI313_21935 SM00478 endonuclease III BI313_21960 SM00244 prohibitin homologues BI313_22050 SM00904 Riboflavin kinase BI313_22095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_22100 SM00382 ATPases associated with a variety of cellular activities BI313_22110 SM00862 Transcriptional regulatory protein, C terminal BI313_22115 SM00342 helix_turn_helix, arabinose operon control protein BI313_22140 SM00387 Histidine kinase-like ATPases BI313_22150 SM00387 Histidine kinase-like ATPases BI313_22150 SM00388 His Kinase A (phosphoacceptor) domain BI313_22155 SM00387 Histidine kinase-like ATPases BI313_22155 SM00388 His Kinase A (phosphoacceptor) domain BI313_22155 SM00448 cheY-homologous receiver domain BI313_22185 SM00387 Histidine kinase-like ATPases BI313_22185 SM00388 His Kinase A (phosphoacceptor) domain BI313_22185 SM00448 cheY-homologous receiver domain BI313_22195 SM00138 Methyltransferase, chemotaxis proteins BI313_22200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_22200 SM00387 Histidine kinase-like ATPases BI313_22200 SM00388 His Kinase A (phosphoacceptor) domain BI313_22200 SM00448 cheY-homologous receiver domain BI313_22205 SM00387 Histidine kinase-like ATPases BI313_22205 SM00388 His Kinase A (phosphoacceptor) domain BI313_22210 SM00448 cheY-homologous receiver domain BI313_22230 SM00813 Alpha-L-arabinofuranosidase C-terminus BI313_22245 SM00382 ATPases associated with a variety of cellular activities BI313_22245 SM00962 SRP54-type protein, GTPase domain BI313_22245 SM00963 SRP54-type protein, helical bundle domain BI313_22290 SM00363 S4 RNA-binding domain BI313_22305 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BI313_22305 SM00534 ATPase domain of DNA mismatch repair MUTS family BI313_22310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BI313_22310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BI313_22320 SM00812 Alpha-L-fucosidase BI313_22345 SM00530 Helix-turn-helix XRE-family like proteins BI313_22400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_22405 SM00838 Elongation factor G C-terminus BI313_22420 SM00358 Double-stranded RNA binding motif BI313_22420 SM00535 Ribonuclease III family BI313_22440 SM00448 cheY-homologous receiver domain BI313_22455 SM01118 BI313_22455 BI313_22490 SM00357 Cold shock protein domain BI313_22505 SM00487 DEAD-like helicases superfamily BI313_22505 SM00490 helicase superfamily c-terminal domain BI313_22535 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BI313_22535 SM00267 diguanylate cyclase BI313_22555 SM00869 Autotransporter beta-domain BI313_22560 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BI313_22565 SM00671 Sel1-like repeats. BI313_22565 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BI313_22875 SM00481 DNA polymerase alpha chain like domain BI313_22915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BI313_22945 SM00267 diguanylate cyclase BI313_22970 SM00972 Spore Coat Protein U domain BI313_22985 SM00972 Spore Coat Protein U domain BI313_22995 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BI313_23020 SM01172 BI313_23020 BI313_23025 SM00710 Parallel beta-helix repeats BI313_23025 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BI313_23055 SM00434 DNA Topoisomerase IV BI313_23060 SM00342 helix_turn_helix, arabinose operon control protein BI313_23065 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_23095 SM01217 BI313_23095 BI313_23100 SM00631 BI313_23100 BI313_23130 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_23150 SM00382 ATPases associated with a variety of cellular activities BI313_23155 SM00347 helix_turn_helix multiple antibiotic resistance protein BI313_23180 SM00947 Carbonic anhydrase BI313_23195 SM00357 Cold shock protein domain BI313_23235 SM00460 Transglutaminase/protease-like homologues BI313_23300 SM00822 BI313_23300 BI313_23310 SM00267 diguanylate cyclase BI313_23345 SM00382 ATPases associated with a variety of cellular activities BI313_23415 SM00857 Resolvase, N terminal domain BI313_23425 SM00342 helix_turn_helix, arabinose operon control protein BI313_23445 SM00422 helix_turn_helix, mercury resistance BI313_23495 SM00857 Resolvase, N terminal domain BI313_23510 SM00530 Helix-turn-helix XRE-family like proteins BI313_23585 SM00470 ParB-like nuclease domain BI313_23640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BI313_23640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BI313_23640 SM00493 BI313_23640 BI313_23650 SM00493 BI313_23650 BI313_23680 SM00857 Resolvase, N terminal domain BI313_23690 SM00670 Large family of predicted nucleotide-binding domains