locus-tag class description XBJ1_0001 PF08299 Bacterial dnaA protein helix-turn-helix XBJ1_0001 PF11638 DnaA N-terminal domain XBJ1_0001 PF00308 Bacterial dnaA protein XBJ1_0002 PF02767 DNA polymerase III beta subunit, central domain XBJ1_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XBJ1_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XBJ1_0003 PF02463 RecF/RecN/SMC N terminal domain XBJ1_0004 PF01751 Toprim domain XBJ1_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_0004 PF00986 DNA gyrase B subunit, carboxyl terminus XBJ1_0004 PF18053 DNA gyrase B subunit insert domain XBJ1_0004 PF00204 DNA gyrase B XBJ1_0008 PF02774 Semialdehyde dehydrogenase, dimerisation domain XBJ1_0008 PF01118 Semialdehyde dehydrogenase, NAD binding domain XBJ1_0009 PF00743 Flavin-binding monooxygenase-like XBJ1_0015 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XBJ1_0015 PF11867 Domain of unknown function (DUF3387) XBJ1_0015 PF18766 SWI2/SNF2 ATPase XBJ1_0017 PF12161 HsdM N-terminal domain XBJ1_0017 PF02384 N-6 DNA Methylase XBJ1_0018 PF13635 Domain of unknown function (DUF4143) XBJ1_0018 PF13173 AAA domain XBJ1_0019 PF01380 SIS domain XBJ1_0020 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0020 PF12804 MobA-like NTP transferase domain XBJ1_0021 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XBJ1_0021 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XBJ1_0022 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XBJ1_0022 PF02874 ATP synthase alpha/beta family, beta-barrel domain XBJ1_0023 PF00231 ATP synthase XBJ1_0024 PF02874 ATP synthase alpha/beta family, beta-barrel domain XBJ1_0024 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XBJ1_0024 PF00306 ATP synthase alpha/beta chain, C terminal domain XBJ1_0025 PF00213 ATP synthase delta (OSCP) subunit XBJ1_0026 PF00430 ATP synthase B/B' CF(0) XBJ1_0027 PF00137 ATP synthase subunit C XBJ1_0028 PF00119 ATP synthase A chain XBJ1_0029 PF03899 ATP synthase I chain XBJ1_0030 PF02527 rRNA small subunit methyltransferase G XBJ1_0031 PF13932 GidA associated domain XBJ1_0031 PF01134 Glucose inhibited division protein A XBJ1_0032 PF00258 Flavodoxin XBJ1_0033 PF01037 Lrp/AsnC ligand binding domain XBJ1_0034 PF03590 Aspartate-ammonia ligase XBJ1_0035 PF05762 VWA domain containing CoxE-like protein XBJ1_0036 PF17868 AAA lid domain XBJ1_0036 PF07728 AAA domain (dynein-related subfamily) XBJ1_0036 PF12592 Protein of unknown function (DUF3763) XBJ1_0037 PF05025 RbsD / FucU transport protein family XBJ1_0038 PF00005 ABC transporter XBJ1_0039 PF02653 Branched-chain amino acid transport system / permease component XBJ1_0040 PF13407 Periplasmic binding protein domain XBJ1_0041 PF00294 pfkB family carbohydrate kinase XBJ1_0042 PF00356 Bacterial regulatory proteins, lacI family XBJ1_0043 PF07690 Major Facilitator Superfamily XBJ1_0048 PF00474 Sodium:solute symporter family XBJ1_0049 PF04341 Protein of unknown function, DUF485 XBJ1_0050 PF00501 AMP-binding enzyme XBJ1_0050 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0050 PF16177 Acetyl-coenzyme A synthetase N-terminus XBJ1_0051 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XBJ1_0051 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XBJ1_0052 PF00579 tRNA synthetases class I (W and Y) XBJ1_0053 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_0054 PF00834 Ribulose-phosphate 3 epimerase family XBJ1_0055 PF02086 D12 class N6 adenine-specific DNA methyltransferase XBJ1_0056 PF05036 Sporulation related domain XBJ1_0057 PF01761 3-dehydroquinate synthase XBJ1_0058 PF01202 Shikimate kinase XBJ1_0060 PF03958 Bacterial type II/III secretion system short domain XBJ1_0060 PF00263 Bacterial type II and III secretion system protein XBJ1_0065 PF17092 Penicillin-binding protein OB-like domain XBJ1_0065 PF00912 Transglycosylase XBJ1_0065 PF00905 Penicillin binding protein transpeptidase domain XBJ1_0066 PF13358 DDE superfamily endonuclease XBJ1_0067 PF00293 NUDIX domain XBJ1_0068 PF07095 Intracellular growth attenuator protein IgaA XBJ1_0069 PF01479 S4 domain XBJ1_0070 PF01430 Hsp33 protein XBJ1_0071 PF01293 Phosphoenolpyruvate carboxykinase XBJ1_0072 PF02678 Pirin XBJ1_0072 PF17954 Quercetinase C-terminal cupin domain XBJ1_0074 PF05638 Type VI secretion system effector, Hcp XBJ1_0075 PF13358 DDE superfamily endonuclease XBJ1_0079 PF00171 Aldehyde dehydrogenase family XBJ1_0081 PF07729 FCD domain XBJ1_0081 PF00392 Bacterial regulatory proteins, gntR family XBJ1_0083 PF00202 Aminotransferase class-III XBJ1_0084 PF05656 Protein of unknown function (DUF805) XBJ1_0085 PF01266 FAD dependent oxidoreductase XBJ1_0089 PF01384 Phosphate transporter family XBJ1_0090 PF00582 Universal stress protein family XBJ1_0091 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XBJ1_0091 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XBJ1_0092 PF04445 Putative SAM-dependent methyltransferase XBJ1_0093 PF01432 Peptidase family M3 XBJ1_0096 PF13358 DDE superfamily endonuclease XBJ1_0097 PF11941 Domain of unknown function (DUF3459) XBJ1_0097 PF00128 Alpha amylase, catalytic domain XBJ1_0098 PF00367 phosphotransferase system, EIIB XBJ1_0098 PF02378 Phosphotransferase system, EIIC XBJ1_0100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 XBJ1_0108 PF01177 Asp/Glu/Hydantoin racemase XBJ1_0109 PF01820 D-ala D-ala ligase N-terminus XBJ1_0109 PF07478 D-ala D-ala ligase C-terminus XBJ1_0111 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0112 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0116 PF08223 PaaX-like protein C-terminal domain XBJ1_0116 PF07848 PaaX-like protein XBJ1_0117 PF14535 AMP-binding enzyme C-terminal domain XBJ1_0117 PF00501 AMP-binding enzyme XBJ1_0118 PF00108 Thiolase, N-terminal domain XBJ1_0118 PF02803 Thiolase, C-terminal domain XBJ1_0119 PF03061 Thioesterase superfamily XBJ1_0120 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain XBJ1_0120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XBJ1_0120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XBJ1_0121 PF00378 Enoyl-CoA hydratase/isomerase XBJ1_0122 PF00378 Enoyl-CoA hydratase/isomerase XBJ1_0123 PF00175 Oxidoreductase NAD-binding domain XBJ1_0123 PF00111 2Fe-2S iron-sulfur cluster binding domain XBJ1_0123 PF00970 Oxidoreductase FAD-binding domain XBJ1_0124 PF01883 Iron-sulfur cluster assembly protein XBJ1_0125 PF05138 Phenylacetic acid catabolic protein XBJ1_0126 PF06243 Phenylacetic acid degradation B XBJ1_0127 PF05138 Phenylacetic acid catabolic protein XBJ1_0128 PF00171 Aldehyde dehydrogenase family XBJ1_0128 PF01575 MaoC like domain XBJ1_0130 PF00155 Aminotransferase class I and II XBJ1_0131 PF10797 Protein of unknown function XBJ1_0132 PF10941 Protein of unknown function DUF2620 XBJ1_0133 PF02126 Phosphotriesterase family XBJ1_0134 PF01168 Alanine racemase, N-terminal domain XBJ1_0136 PF14502 Helix-turn-helix domain XBJ1_0136 PF14503 YhfZ C-terminal domain XBJ1_0138 PF01266 FAD dependent oxidoreductase XBJ1_0138 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XBJ1_0140 PF00455 DeoR C terminal sensor domain XBJ1_0140 PF08220 DeoR-like helix-turn-helix domain XBJ1_0141 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease XBJ1_0141 PF01694 Rhomboid family XBJ1_0142 PF00581 Rhodanese-like domain XBJ1_0143 PF01106 NifU-like domain XBJ1_0143 PF01521 Iron-sulphur cluster biosynthesis XBJ1_0144 PF00156 Phosphoribosyl transferase domain XBJ1_0145 PF00561 alpha/beta hydrolase fold XBJ1_0148 PF03811 InsA N-terminal domain XBJ1_0148 PF12759 InsA C-terminal domain XBJ1_0149 PF03400 IS1 transposase XBJ1_0153 PF01965 DJ-1/PfpI family XBJ1_0156 PF01522 Polysaccharide deacetylase XBJ1_0157 PF03466 LysR substrate binding domain XBJ1_0157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_0158 PF07690 Major Facilitator Superfamily XBJ1_0161 PF03400 IS1 transposase XBJ1_0162 PF13333 Integrase core domain XBJ1_0162 PF00665 Integrase core domain XBJ1_0162 PF13276 HTH-like domain XBJ1_0163 PF09012 FeoC like transcriptional regulator XBJ1_0164 PF07664 Ferrous iron transport protein B C terminus XBJ1_0164 PF17910 FeoB cytosolic helical domain XBJ1_0164 PF02421 Ferrous iron transport protein B XBJ1_0164 PF07670 Nucleoside recognition XBJ1_0165 PF04023 FeoA domain XBJ1_0172 PF05638 Type VI secretion system effector, Hcp XBJ1_0181 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_0184 PF16921 Tex protein YqgF-like domain XBJ1_0184 PF09371 Tex-like protein N-terminal domain XBJ1_0184 PF00575 S1 RNA binding domain XBJ1_0184 PF17674 HHH domain XBJ1_0185 PF03449 Transcription elongation factor, N-terminal XBJ1_0185 PF01272 Transcription elongation factor, GreA/GreB, C-term XBJ1_0186 PF00072 Response regulator receiver domain XBJ1_0186 PF00486 Transcriptional regulatory protein, C terminal XBJ1_0187 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_0187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_0187 PF00672 HAMP domain XBJ1_0188 PF12849 PBP superfamily domain XBJ1_0189 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0190 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0191 PF00005 ABC transporter XBJ1_0192 PF01895 PhoU domain XBJ1_0193 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_0194 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0195 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0197 PF02368 Bacterial Ig-like domain (group 2) XBJ1_0197 PF01476 LysM domain XBJ1_0197 PF07979 Intimin C-type lectin domain XBJ1_0197 PF11924 Inverse autotransporter, beta-domain XBJ1_0197 PF02369 Bacterial Ig-like domain (group 1) XBJ1_0205 PF00860 Permease family XBJ1_0207 PF04220 Der GTPase activator (YihI) XBJ1_0208 PF06969 HemN C-terminal domain XBJ1_0208 PF04055 Radical SAM superfamily XBJ1_0209 PF00158 Sigma-54 interaction domain XBJ1_0209 PF02954 Bacterial regulatory protein, Fis family XBJ1_0209 PF00072 Response regulator receiver domain XBJ1_0210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_0210 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_0211 PF03951 Glutamine synthetase, beta-Grasp domain XBJ1_0211 PF00120 Glutamine synthetase, catalytic domain XBJ1_0212 PF12951 Passenger-associated-transport-repeat XBJ1_0221 PF13358 DDE superfamily endonuclease XBJ1_0225 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_0226 PF02580 D-Tyr-tRNA(Tyr) deacylase XBJ1_0227 PF00583 Acetyltransferase (GNAT) family XBJ1_0227 PF09500 Putative thioesterase (yiiD_Cterm) XBJ1_0228 PF05170 AsmA family XBJ1_0229 PF00860 Permease family XBJ1_0230 PF03616 Sodium/glutamate symporter XBJ1_0231 PF17191 RecG wedge domain XBJ1_0231 PF00271 Helicase conserved C-terminal domain XBJ1_0231 PF00270 DEAD/DEAH box helicase XBJ1_0233 PF13291 ACT domain XBJ1_0233 PF04607 Region found in RelA / SpoT proteins XBJ1_0233 PF02824 TGS domain XBJ1_0234 PF01192 RNA polymerase Rpb6 XBJ1_0235 PF00625 Guanylate kinase XBJ1_0236 PF01653 NAD-dependent DNA ligase adenylation domain XBJ1_0236 PF03120 NAD-dependent DNA ligase OB-fold domain XBJ1_0237 PF03458 UPF0126 domain XBJ1_0238 PF12566 Protein of unknown function (DUF3748) XBJ1_0238 PF07676 WD40-like Beta Propeller Repeat XBJ1_0240 PF13358 DDE superfamily endonuclease XBJ1_0241 PF00155 Aminotransferase class I and II XBJ1_0242 PF03352 Methyladenine glycosylase XBJ1_0243 PF02091 Glycyl-tRNA synthetase alpha subunit XBJ1_0244 PF05746 DALR anticodon binding domain XBJ1_0244 PF02092 Glycyl-tRNA synthetase beta subunit XBJ1_0246 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_0247 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0248 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0248 PF12911 N-terminal TM domain of oligopeptide transport permease C XBJ1_0249 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XBJ1_0249 PF00005 ABC transporter XBJ1_0250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XBJ1_0250 PF00005 ABC transporter XBJ1_0251 PF00990 Diguanylate cyclase, GGDEF domain XBJ1_0251 PF17154 Gammaproteobacterial periplasmic sensor domain XBJ1_0251 PF00563 EAL domain XBJ1_0251 PF00672 HAMP domain XBJ1_0252 PF05193 Peptidase M16 inactive domain XBJ1_0252 PF00675 Insulinase (Peptidase family M16) XBJ1_0253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_0253 PF03466 LysR substrate binding domain XBJ1_0254 PF07690 Major Facilitator Superfamily XBJ1_0256 PF01361 Tautomerase enzyme XBJ1_0257 PF03631 Virulence factor BrkB XBJ1_0258 PF05860 haemagglutination activity domain XBJ1_0258 PF13332 Hemagglutinin repeat XBJ1_0259 PF17287 POTRA domain XBJ1_0259 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XBJ1_0259 PF08479 POTRA domain, ShlB-type XBJ1_0261 PF05638 Type VI secretion system effector, Hcp XBJ1_0272 PF07724 AAA domain (Cdc48 subfamily) XBJ1_0272 PF17871 AAA lid domain XBJ1_0272 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_0272 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_0278 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_0281 PF05593 RHS Repeat XBJ1_0281 PF03527 RHS protein XBJ1_0284 PF13007 Transposase C of IS166 homeodomain XBJ1_0284 PF13005 zinc-finger binding domain of transposase IS66 XBJ1_0284 PF03050 Transposase IS66 family XBJ1_0284 PF13817 IS66 C-terminal element XBJ1_0285 PF03400 IS1 transposase XBJ1_0287 PF13007 Transposase C of IS166 homeodomain XBJ1_0287 PF13817 IS66 C-terminal element XBJ1_0287 PF03050 Transposase IS66 family XBJ1_0287 PF13005 zinc-finger binding domain of transposase IS66 XBJ1_0292 PF03527 RHS protein XBJ1_0292 PF05593 RHS Repeat XBJ1_0299 PF12759 InsA C-terminal domain XBJ1_0299 PF03811 InsA N-terminal domain XBJ1_0300 PF03400 IS1 transposase XBJ1_0310 PF00501 AMP-binding enzyme XBJ1_0310 PF00975 Thioesterase domain XBJ1_0310 PF00668 Condensation domain XBJ1_0310 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0310 PF00550 Phosphopantetheine attachment site XBJ1_0311 PF01494 FAD binding domain XBJ1_0316 PF08331 Domain of unknown function (DUF1730) XBJ1_0317 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XBJ1_0318 PF01520 N-acetylmuramoyl-L-alanine amidase XBJ1_0319 PF08676 MutL C terminal dimerisation domain XBJ1_0319 PF01119 DNA mismatch repair protein, C-terminal domain XBJ1_0321 PF17209 Hfq protein XBJ1_0322 PF16360 GTP-binding GTPase Middle Region XBJ1_0322 PF13167 GTP-binding GTPase N-terminal XBJ1_0322 PF01926 50S ribosome-binding GTPase XBJ1_0323 PF12221 Bacterial membrane protein N terminal XBJ1_0323 PF01145 SPFH domain / Band 7 family XBJ1_0324 PF01145 SPFH domain / Band 7 family XBJ1_0325 PF00709 Adenylosuccinate synthetase XBJ1_0326 PF02082 Transcriptional regulator XBJ1_0327 PF00575 S1 RNA binding domain XBJ1_0327 PF00773 RNB domain XBJ1_0327 PF17876 Cold shock domain XBJ1_0327 PF08461 Ribonuclease R winged-helix domain XBJ1_0327 PF08206 Ribonuclease B OB domain XBJ1_0328 PF08032 RNA 2'-O ribose methyltransferase substrate binding XBJ1_0328 PF00588 SpoU rRNA Methylase family XBJ1_0329 PF01250 Ribosomal protein S6 XBJ1_0330 PF00436 Single-strand binding protein family XBJ1_0331 PF01084 Ribosomal protein S18 XBJ1_0332 PF01281 Ribosomal protein L9, N-terminal domain XBJ1_0332 PF03948 Ribosomal protein L9, C-terminal domain XBJ1_0333 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XBJ1_0333 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XBJ1_0334 PF00459 Inositol monophosphatase family XBJ1_0335 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) XBJ1_0337 PF06526 Protein of unknown function (DUF1107) XBJ1_0338 PF00571 CBS domain XBJ1_0338 PF03471 Transporter associated domain XBJ1_0338 PF01595 Cyclin M transmembrane N-terminal domain XBJ1_0340 PF01625 Peptide methionine sulfoxide reductase XBJ1_0341 PF01103 Surface antigen XBJ1_0341 PF07244 Surface antigen variable number repeat XBJ1_0341 PF17243 POTRA domain TamA domain 1 XBJ1_0342 PF04357 TamB, inner membrane protein subunit of TAM complex XBJ1_0343 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like XBJ1_0344 PF00719 Inorganic pyrophosphatase XBJ1_0346 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XBJ1_0347 PF01225 Mur ligase family, catalytic domain XBJ1_0347 PF02875 Mur ligase family, glutamate ligase domain XBJ1_0347 PF08245 Mur ligase middle domain XBJ1_0348 PF01316 Arginine repressor, DNA binding domain XBJ1_0348 PF02863 Arginine repressor, C-terminal domain XBJ1_0349 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XBJ1_0349 PF00056 lactate/malate dehydrogenase, NAD binding domain XBJ1_0350 PF13693 Winged helix-turn-helix DNA-binding XBJ1_0353 PF00348 Polyprenyl synthetase XBJ1_0355 PF00829 Ribosomal prokaryotic L21 protein XBJ1_0356 PF01016 Ribosomal L27 protein XBJ1_0357 PF01926 50S ribosome-binding GTPase XBJ1_0357 PF01018 GTP1/OBG XBJ1_0358 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family XBJ1_0359 PF01272 Transcription elongation factor, GreA/GreB, C-term XBJ1_0359 PF03449 Transcription elongation factor, N-terminal XBJ1_0360 PF01985 CRS1 / YhbY (CRM) domain XBJ1_0361 PF01728 FtsJ-like methyltransferase XBJ1_0362 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_0362 PF17862 AAA+ lid domain XBJ1_0362 PF06480 FtsH Extracellular XBJ1_0362 PF01434 Peptidase family M41 XBJ1_0363 PF00809 Pterin binding enzyme XBJ1_0364 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XBJ1_0364 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XBJ1_0364 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XBJ1_0364 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XBJ1_0365 PF03840 Preprotein translocase SecG subunit XBJ1_0366 PF17384 RimP C-terminal SH3 domain XBJ1_0366 PF02576 RimP N-terminal domain XBJ1_0367 PF08529 NusA N-terminal domain XBJ1_0367 PF00575 S1 RNA binding domain XBJ1_0367 PF13184 NusA-like KH domain XBJ1_0368 PF00009 Elongation factor Tu GTP binding domain XBJ1_0368 PF03144 Elongation factor Tu domain 2 XBJ1_0368 PF08364 Bacterial translation initiation factor IF-2 associated region XBJ1_0368 PF04760 Translation initiation factor IF-2, N-terminal region XBJ1_0368 PF11987 Translation-initiation factor 2 XBJ1_0369 PF02033 Ribosome-binding factor A XBJ1_0370 PF01509 TruB family pseudouridylate synthase (N terminal domain) XBJ1_0370 PF09157 Pseudouridine synthase II TruB, C-terminal XBJ1_0370 PF16198 tRNA pseudouridylate synthase B C-terminal domain XBJ1_0371 PF00312 Ribosomal protein S15 XBJ1_0372 PF03725 3' exoribonuclease family, domain 2 XBJ1_0372 PF00575 S1 RNA binding domain XBJ1_0372 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XBJ1_0372 PF00013 KH domain XBJ1_0372 PF01138 3' exoribonuclease family, domain 1 XBJ1_0373 PF07719 Tetratricopeptide repeat XBJ1_0373 PF13181 Tetratricopeptide repeat XBJ1_0374 PF00271 Helicase conserved C-terminal domain XBJ1_0374 PF00270 DEAD/DEAH box helicase XBJ1_0374 PF03880 DbpA RNA binding domain XBJ1_0374 PF12343 Cold shock protein DEAD box A XBJ1_0375 PF04397 LytTr DNA-binding domain XBJ1_0375 PF00072 Response regulator receiver domain XBJ1_0376 PF06580 Histidine kinase XBJ1_0376 PF07694 5TMR of 5TMR-LYT XBJ1_0377 PF11924 Inverse autotransporter, beta-domain XBJ1_0377 PF09134 Invasin, domain 3 XBJ1_0377 PF02369 Bacterial Ig-like domain (group 1) XBJ1_0378 PF00589 Phage integrase family XBJ1_0381 PF00106 short chain dehydrogenase XBJ1_0382 PF03466 LysR substrate binding domain XBJ1_0382 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_0383 PF07690 Major Facilitator Superfamily XBJ1_0388 PF13508 Acetyltransferase (GNAT) domain XBJ1_0389 PF01541 GIY-YIG catalytic domain XBJ1_0391 PF01243 Pyridoxamine 5'-phosphate oxidase XBJ1_0392 PF01042 Endoribonuclease L-PSP XBJ1_0393 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain XBJ1_0393 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain XBJ1_0396 PF05684 Protein of unknown function (DUF819) XBJ1_0399 PF00384 Molybdopterin oxidoreductase XBJ1_0400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XBJ1_0400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XBJ1_0405 PF01494 FAD binding domain XBJ1_0406 PF00465 Iron-containing alcohol dehydrogenase XBJ1_0406 PF00171 Aldehyde dehydrogenase family XBJ1_0408 PF00501 AMP-binding enzyme XBJ1_0408 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0409 PF00117 Glutamine amidotransferase class-I XBJ1_0410 PF00425 chorismate binding enzyme XBJ1_0410 PF04715 Anthranilate synthase component I, N terminal region XBJ1_0411 PF00501 AMP-binding enzyme XBJ1_0411 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0413 PF12706 Beta-lactamase superfamily domain XBJ1_0414 PF06956 Regulator of RNA terminal phosphate cyclase XBJ1_0414 PF00158 Sigma-54 interaction domain XBJ1_0417 PF01139 tRNA-splicing ligase RtcB XBJ1_0418 PF10127 RNA repair pathway DNA polymerase beta family XBJ1_0419 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family XBJ1_0420 PF01810 LysE type translocator XBJ1_0426 PF00294 pfkB family carbohydrate kinase XBJ1_0427 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XBJ1_0427 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XBJ1_0428 PF06877 Regulator of ribonuclease activity B XBJ1_0429 PF00583 Acetyltransferase (GNAT) family XBJ1_0430 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_0431 PF00005 ABC transporter XBJ1_0432 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0435 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_0440 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XBJ1_0442 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XBJ1_0444 PF00133 tRNA synthetases class I (I, L, M and V) XBJ1_0444 PF10458 Valyl tRNA synthetase tRNA binding arm XBJ1_0444 PF08264 Anticodon-binding domain of tRNA XBJ1_0445 PF04364 DNA polymerase III chi subunit, HolC XBJ1_0447 PF02789 Cytosol aminopeptidase family, N-terminal domain XBJ1_0447 PF00883 Cytosol aminopeptidase family, catalytic domain XBJ1_0448 PF03739 Lipopolysaccharide export system permease LptF/LptG XBJ1_0449 PF03739 Lipopolysaccharide export system permease LptF/LptG XBJ1_0450 PF00144 Beta-lactamase XBJ1_0453 PF13356 Arm DNA-binding domain XBJ1_0453 PF00589 Phage integrase family XBJ1_0454 PF00271 Helicase conserved C-terminal domain XBJ1_0454 PF00176 SNF2 family N-terminal domain XBJ1_0459 PF13340 Putative transposase of IS4/5 family (DUF4096) XBJ1_0461 PF03400 IS1 transposase XBJ1_0462 PF03811 InsA N-terminal domain XBJ1_0462 PF12759 InsA C-terminal domain XBJ1_0463 PF01906 Putative heavy-metal-binding XBJ1_0465 PF01048 Phosphorylase superfamily XBJ1_0468 PF01695 IstB-like ATP binding protein XBJ1_0469 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XBJ1_0469 PF02378 Phosphotransferase system, EIIC XBJ1_0471 PF00005 ABC transporter XBJ1_0471 PF08402 TOBE domain XBJ1_0472 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0473 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0474 PF13416 Bacterial extracellular solute-binding protein XBJ1_0478 PF01139 tRNA-splicing ligase RtcB XBJ1_0484 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_0485 PF01053 Cys/Met metabolism PLP-dependent enzyme XBJ1_0486 PF06316 Enterobacterial Ail/Lom protein XBJ1_0487 PF02321 Outer membrane efflux protein XBJ1_0488 PF00529 HlyD membrane-fusion protein of T1SS XBJ1_0489 PF00664 ABC transporter transmembrane region XBJ1_0489 PF00005 ABC transporter XBJ1_0490 PF02974 Protease inhibitor Inh XBJ1_0491 PF08548 Peptidase M10 serralysin C terminal XBJ1_0491 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) XBJ1_0492 PF18125 RlmM ferredoxin-like domain XBJ1_0492 PF01728 FtsJ-like methyltransferase XBJ1_0493 PF04241 Protein of unknown function (DUF423) XBJ1_0494 PF03466 LysR substrate binding domain XBJ1_0494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_0495 PF00860 Permease family XBJ1_0496 PF00999 Sodium/hydrogen exchanger family XBJ1_0497 PF00892 EamA-like transporter family XBJ1_0498 PF03466 LysR substrate binding domain XBJ1_0498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_0499 PF08267 Cobalamin-independent synthase, N-terminal domain XBJ1_0499 PF01717 Cobalamin-independent synthase, Catalytic domain XBJ1_0502 PF01048 Phosphorylase superfamily XBJ1_0504 PF09335 SNARE associated Golgi protein XBJ1_0505 PF02646 RmuC family XBJ1_0506 PF01209 ubiE/COQ5 methyltransferase family XBJ1_0507 PF02036 SCP-2 sterol transfer family XBJ1_0508 PF03109 ABC1 family XBJ1_0509 PF02416 mttA/Hcf106 family XBJ1_0511 PF00902 Sec-independent protein translocase protein (TatC) XBJ1_0512 PF00490 Delta-aminolevulinic acid dehydratase XBJ1_0513 PF02357 Transcription termination factor nusG XBJ1_0514 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase XBJ1_0515 PF00970 Oxidoreductase FAD-binding domain XBJ1_0515 PF00175 Oxidoreductase NAD-binding domain XBJ1_0516 PF00108 Thiolase, N-terminal domain XBJ1_0516 PF02803 Thiolase, C-terminal domain XBJ1_0517 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XBJ1_0517 PF00378 Enoyl-CoA hydratase/isomerase XBJ1_0517 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XBJ1_0519 PF00557 Metallopeptidase family M24 XBJ1_0520 PF09186 Domain of unknown function (DUF1949) XBJ1_0520 PF01205 Uncharacterized protein family UPF0029 XBJ1_0521 PF02386 Cation transport protein XBJ1_0522 PF12724 Flavodoxin domain XBJ1_0529 PF01566 Natural resistance-associated macrophage protein XBJ1_0530 PF03746 LamB/YcsF family XBJ1_0531 PF02682 Carboxyltransferase domain, subdomain C and D XBJ1_0532 PF00364 Biotin-requiring enzyme XBJ1_0532 PF00289 Biotin carboxylase, N-terminal domain XBJ1_0532 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XBJ1_0532 PF02785 Biotin carboxylase C-terminal domain XBJ1_0534 PF02313 Fumarate reductase subunit D XBJ1_0535 PF02300 Fumarate reductase subunit C XBJ1_0536 PF13085 2Fe-2S iron-sulfur cluster binding domain XBJ1_0536 PF13183 4Fe-4S dicluster domain XBJ1_0537 PF02910 Fumarate reductase flavoprotein C-term XBJ1_0537 PF00890 FAD binding domain XBJ1_0539 PF00152 tRNA synthetases class II (D, K and N) XBJ1_0541 PF03009 Glycerophosphoryl diester phosphodiesterase family XBJ1_0542 PF07690 Major Facilitator Superfamily XBJ1_0543 PF00501 AMP-binding enzyme XBJ1_0543 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0543 PF07993 Male sterility protein XBJ1_0543 PF00550 Phosphopantetheine attachment site XBJ1_0543 PF00668 Condensation domain XBJ1_0544 PF00465 Iron-containing alcohol dehydrogenase XBJ1_0547 PF02592 Putative vitamin uptake transporter XBJ1_0548 PF01206 Sulfurtransferase TusA XBJ1_0549 PF00403 Heavy-metal-associated domain XBJ1_0550 PF06611 Protein of unknown function (DUF1145) XBJ1_0553 PF02881 SRP54-type protein, helical bundle domain XBJ1_0553 PF00448 SRP54-type protein, GTPase domain XBJ1_0554 PF00005 ABC transporter XBJ1_0555 PF18075 FtsX extracellular domain XBJ1_0555 PF02687 FtsX-like permease family XBJ1_0556 PF04545 Sigma-70, region 4 XBJ1_0556 PF04542 Sigma-70 region 2 XBJ1_0556 PF00140 Sigma-70 factor, region 1.2 XBJ1_0557 PF02595 Glycerate kinase family XBJ1_0558 PF12568 Acetyltransferase (GNAT) domain, PanZ XBJ1_0560 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_0567 PF00704 Glycosyl hydrolases family 18 XBJ1_0568 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain XBJ1_0568 PF18413 Neuraminidase-like domain XBJ1_0569 PF03538 Salmonella virulence plasmid 28.1kDa A protein XBJ1_0570 PF00704 Glycosyl hydrolases family 18 XBJ1_0571 PF01381 Helix-turn-helix XBJ1_0576 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XBJ1_0576 PF01367 5'-3' exonuclease, C-terminal SAM fold XBJ1_0577 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XBJ1_0577 PF03641 Possible lysine decarboxylase XBJ1_0577 PF11892 Domain of unknown function (DUF3412) XBJ1_0578 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XBJ1_0578 PF14489 QueF-like protein XBJ1_0580 PF07348 Syd protein (SUKH-2) XBJ1_0582 PF04287 tRNA pseudouridine synthase C XBJ1_0583 PF00849 RNA pseudouridylate synthase XBJ1_0583 PF04287 tRNA pseudouridine synthase C XBJ1_0584 PF00258 Flavodoxin XBJ1_0585 PF11944 Protein of unknown function (DUF3461) XBJ1_0586 PF14602 Hexapeptide repeat of succinyl-transferase XBJ1_0586 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XBJ1_0586 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0587 PF01842 ACT domain XBJ1_0587 PF08335 GlnD PII-uridylyltransferase XBJ1_0587 PF01966 HD domain XBJ1_0588 PF00557 Metallopeptidase family M24 XBJ1_0589 PF00318 Ribosomal protein S2 XBJ1_0590 PF00889 Elongation factor TS XBJ1_0591 PF00696 Amino acid kinase family XBJ1_0592 PF01765 Ribosome recycling factor XBJ1_0593 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XBJ1_0593 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XBJ1_0593 PF13288 DXP reductoisomerase C-terminal domain XBJ1_0594 PF01255 Putative undecaprenyl diphosphate synthase XBJ1_0596 PF02163 Peptidase family M50 XBJ1_0596 PF17820 PDZ domain XBJ1_0597 PF07244 Surface antigen variable number repeat XBJ1_0597 PF01103 Surface antigen XBJ1_0598 PF03938 Outer membrane protein (OmpH-like) XBJ1_0599 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XBJ1_0599 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0600 PF07977 FabA-like domain XBJ1_0601 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0601 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XBJ1_0602 PF02684 Lipid-A-disaccharide synthetase XBJ1_0603 PF01351 Ribonuclease HII XBJ1_0604 PF14579 Helix-hairpin-helix motif XBJ1_0604 PF01336 OB-fold nucleic acid binding domain XBJ1_0604 PF02811 PHP domain XBJ1_0604 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XBJ1_0604 PF07733 Bacterial DNA polymerase III alpha NTPase domain XBJ1_0605 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XBJ1_0607 PF09179 TilS substrate binding domain XBJ1_0607 PF01171 PP-loop family XBJ1_0607 PF11734 TilS substrate C-terminal domain XBJ1_0608 PF07073 Modulator of Rho-dependent transcription termination (ROF) XBJ1_0609 PF17185 NlpE C-terminal OB domain XBJ1_0609 PF04170 NlpE N-terminal domain XBJ1_0610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XBJ1_0610 PF04073 Aminoacyl-tRNA editing domain XBJ1_0610 PF03129 Anticodon binding domain XBJ1_0611 PF01980 tRNA-methyltransferase O XBJ1_0611 PF18389 TrmO C-terminal domain XBJ1_0613 PF03180 NLPA lipoprotein XBJ1_0614 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0615 PF09383 NIL domain XBJ1_0615 PF00005 ABC transporter XBJ1_0624 PF13333 Integrase core domain XBJ1_0624 PF00665 Integrase core domain XBJ1_0624 PF13276 HTH-like domain XBJ1_0625 PF01527 Transposase XBJ1_0631 PF02371 Transposase IS116/IS110/IS902 family XBJ1_0631 PF01548 Transposase XBJ1_0632 PF02371 Transposase IS116/IS110/IS902 family XBJ1_0632 PF01548 Transposase XBJ1_0634 PF02567 Phenazine biosynthesis-like protein XBJ1_0639 PF01070 FMN-dependent dehydrogenase XBJ1_0640 PF02652 L-lactate permease XBJ1_0645 PF06821 Serine hydrolase XBJ1_0647 PF03400 IS1 transposase XBJ1_0648 PF03811 InsA N-terminal domain XBJ1_0648 PF12759 InsA C-terminal domain XBJ1_0656 PF07484 Phage Tail Collar Domain XBJ1_0656 PF03335 Phage tail fibre repeat XBJ1_0656 PF07484 Phage Tail Collar Domain XBJ1_0656 PF03335 Phage tail fibre repeat XBJ1_0656 PF08400 Prophage tail fibre N-terminal XBJ1_0656 PF08400 Prophage tail fibre N-terminal XBJ1_0658 PF05638 Type VI secretion system effector, Hcp XBJ1_0663 PF01548 Transposase XBJ1_0663 PF02371 Transposase IS116/IS110/IS902 family XBJ1_0679 PF04860 Phage portal protein XBJ1_0689 PF03245 Bacteriophage Rz lysis protein XBJ1_0697 PF03589 Antitermination protein XBJ1_0705 PF08346 AntA/AntB antirepressor XBJ1_0705 PF10548 P22AR C-terminal domain XBJ1_0709 PF12759 InsA C-terminal domain XBJ1_0709 PF03811 InsA N-terminal domain XBJ1_0710 PF03400 IS1 transposase XBJ1_0711 PF14659 Phage integrase, N-terminal SAM-like domain XBJ1_0711 PF13356 Arm DNA-binding domain XBJ1_0711 PF00589 Phage integrase family XBJ1_0712 PF00717 Peptidase S24-like XBJ1_0712 PF01381 Helix-turn-helix XBJ1_0714 PF02371 Transposase IS116/IS110/IS902 family XBJ1_0714 PF01548 Transposase XBJ1_0716 PF00313 'Cold-shock' DNA-binding domain XBJ1_0718 PF18416 N-acetylglucosamine binding protein domain 2 XBJ1_0718 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading XBJ1_0719 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_0722 PF13505 Outer membrane protein beta-barrel domain XBJ1_0726 PF00111 2Fe-2S iron-sulfur cluster binding domain XBJ1_0727 PF00268 Ribonucleotide reductase, small chain XBJ1_0728 PF02867 Ribonucleotide reductase, barrel domain XBJ1_0728 PF03477 ATP cone domain XBJ1_0728 PF00317 Ribonucleotide reductase, all-alpha domain XBJ1_0730 PF03989 DNA gyrase C-terminal domain, beta-propeller XBJ1_0730 PF00521 DNA gyrase/topoisomerase IV, subunit A XBJ1_0731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_0731 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_0731 PF00072 Response regulator receiver domain XBJ1_0731 PF09456 RcsC Alpha-Beta-Loop (ABL) XBJ1_0732 PF00196 Bacterial regulatory proteins, luxR family XBJ1_0732 PF00072 Response regulator receiver domain XBJ1_0733 PF01627 Hpt domain XBJ1_0733 PF16359 RcsD-ABL domain XBJ1_0733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_0734 PF03222 Tryptophan/tyrosine permease family XBJ1_0735 PF07437 YfaZ precursor XBJ1_0736 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0736 PF00501 AMP-binding enzyme XBJ1_0737 PF13378 Enolase C-terminal domain-like XBJ1_0738 PF00378 Enoyl-CoA hydratase/isomerase XBJ1_0739 PF12697 Alpha/beta hydrolase family XBJ1_0740 PF16582 Middle domain of thiamine pyrophosphate XBJ1_0740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XBJ1_0740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XBJ1_0742 PF13953 PapC C-terminal domain XBJ1_0742 PF00577 Outer membrane usher protein XBJ1_0742 PF13954 PapC N-terminal domain XBJ1_0743 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XBJ1_0743 PF02753 Pili assembly chaperone PapD, C-terminal domain XBJ1_0746 PF12759 InsA C-terminal domain XBJ1_0746 PF03811 InsA N-terminal domain XBJ1_0747 PF07828 PA-IL-like protein XBJ1_0748 PF03811 InsA N-terminal domain XBJ1_0748 PF12759 InsA C-terminal domain XBJ1_0749 PF03400 IS1 transposase XBJ1_0751 PF01548 Transposase XBJ1_0751 PF02371 Transposase IS116/IS110/IS902 family XBJ1_0753 PF13358 DDE superfamily endonuclease XBJ1_0758 PF13358 DDE superfamily endonuclease XBJ1_0760 PF13356 Arm DNA-binding domain XBJ1_0760 PF14659 Phage integrase, N-terminal SAM-like domain XBJ1_0760 PF00589 Phage integrase family XBJ1_0761 PF04358 DsrC like protein XBJ1_0762 PF00708 Acylphosphatase XBJ1_0764 PF08755 Hemimethylated DNA-binding protein YccV like XBJ1_0765 PF13380 CoA binding domain XBJ1_0766 PF13361 UvrD-like helicase C-terminal domain XBJ1_0766 PF12462 DNA helicase IV / RNA helicase N terminal XBJ1_0766 PF00580 UvrD/REP helicase N-terminal domain XBJ1_0767 PF12805 FUSC-like inner membrane protein yccS XBJ1_0771 PF13817 IS66 C-terminal element XBJ1_0771 PF03050 Transposase IS66 family XBJ1_0771 PF13007 Transposase C of IS166 homeodomain XBJ1_0771 PF13005 zinc-finger binding domain of transposase IS66 XBJ1_0774 PF00550 Phosphopantetheine attachment site XBJ1_0774 PF00668 Condensation domain XBJ1_0774 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0774 PF00501 AMP-binding enzyme XBJ1_0775 PF13193 AMP-binding enzyme C-terminal domain XBJ1_0775 PF00501 AMP-binding enzyme XBJ1_0775 PF00668 Condensation domain XBJ1_0775 PF00550 Phosphopantetheine attachment site XBJ1_0775 PF00975 Thioesterase domain XBJ1_0776 PF04993 TfoX N-terminal domain XBJ1_0776 PF04994 TfoX C-terminal domain XBJ1_0777 PF03846 Cell division inhibitor SulA XBJ1_0778 PF01389 OmpA-like transmembrane domain XBJ1_0778 PF00691 OmpA family XBJ1_0779 PF06303 MatP N-terminal domain XBJ1_0779 PF17414 MatP C-terminal ribbon-helix-helix domain XBJ1_0780 PF13654 AAA domain XBJ1_0780 PF05362 Lon protease (S16) C-terminal proteolytic domain XBJ1_0781 PF07977 FabA-like domain XBJ1_0782 PF04957 Ribosome modulation factor XBJ1_0783 PF03886 ABC-type transport auxiliary lipoprotein component XBJ1_0784 PF02470 MlaD protein XBJ1_0785 PF04403 Paraquat-inducible protein A XBJ1_0786 PF16326 ABC transporter C-terminal domain XBJ1_0786 PF12848 ABC transporter XBJ1_0786 PF00005 ABC transporter XBJ1_0787 PF01170 Putative RNA methylase family UPF0020 XBJ1_0787 PF02926 THUMP domain XBJ1_0787 PF10672 S-adenosylmethionine-dependent methyltransferase XBJ1_0788 PF00111 2Fe-2S iron-sulfur cluster binding domain XBJ1_0788 PF03473 MOSC domain XBJ1_0788 PF03476 MOSC N-terminal beta barrel domain XBJ1_0789 PF07126 Cell-division protein ZapC XBJ1_0790 PF01180 Dihydroorotate dehydrogenase XBJ1_0791 PF01433 Peptidase family M1 domain XBJ1_0791 PF17432 Domain of unknown function (DUF3458_C) ARM repeats XBJ1_0791 PF11940 Domain of unknown function (DUF3458) Ig-like fold XBJ1_0792 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XBJ1_0792 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XBJ1_0793 PF00152 tRNA synthetases class II (D, K and N) XBJ1_0793 PF01336 OB-fold nucleic acid binding domain XBJ1_0794 PF00267 Gram-negative porin XBJ1_0796 PF00155 Aminotransferase class I and II XBJ1_0797 PF00753 Metallo-beta-lactamase superfamily XBJ1_0798 PF05951 Bacterial protein of unknown function (DUF882) XBJ1_0799 PF03734 L,D-transpeptidase catalytic domain XBJ1_0799 PF01471 Putative peptidoglycan binding domain XBJ1_0800 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XBJ1_0801 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_0802 PF16330 MukB hinge domain XBJ1_0802 PF04310 MukB N-terminal XBJ1_0803 PF04288 MukE-like family XBJ1_0804 PF03882 MukF winged-helix domain XBJ1_0804 PF17193 MukF C-terminal domain XBJ1_0804 PF17192 MukF middle domain XBJ1_0806 PF02698 DUF218 domain XBJ1_0807 PF02348 Cytidylyltransferase XBJ1_0808 PF03966 Trm112p-like protein XBJ1_0809 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XBJ1_0810 PF00005 ABC transporter XBJ1_0810 PF00664 ABC transporter transmembrane region XBJ1_0811 PF03772 Competence protein XBJ1_0811 PF00753 Metallo-beta-lactamase superfamily XBJ1_0813 PF00216 Bacterial DNA-binding protein XBJ1_0814 PF00575 S1 RNA binding domain XBJ1_0815 PF02224 Cytidylate kinase XBJ1_0816 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XBJ1_0817 PF00266 Aminotransferase class-V XBJ1_0818 PF00710 Asparaginase, N-terminal XBJ1_0818 PF17763 Glutaminase/Asparaginase C-terminal domain XBJ1_0819 PF18381 YcaO cyclodehydratase C-terminal domain XBJ1_0819 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding XBJ1_0820 PF01226 Formate/nitrite transporter XBJ1_0821 PF02901 Pyruvate formate lyase-like XBJ1_0821 PF01228 Glycine radical XBJ1_0822 PF04055 Radical SAM superfamily XBJ1_0827 PF13358 DDE superfamily endonuclease XBJ1_0828 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XBJ1_0828 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XBJ1_0829 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XBJ1_0829 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XBJ1_0830 PF13610 DDE domain XBJ1_0833 PF02277 Phosphoribosyltransferase XBJ1_0834 PF02654 Cobalamin-5-phosphate synthase XBJ1_0835 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XBJ1_0836 PF07685 CobB/CobQ-like glutamine amidotransferase domain XBJ1_0837 PF00005 ABC transporter XBJ1_0838 PF02361 Cobalt transport protein XBJ1_0839 PF02553 Cobalt transport protein component CbiN XBJ1_0840 PF01891 Cobalt uptake substrate-specific transmembrane region XBJ1_0841 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_0842 PF06180 Cobalt chelatase (CbiK) XBJ1_0843 PF02571 Precorrin-6x reductase CbiJ/CobK XBJ1_0844 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_0845 PF11760 Cobalamin synthesis G N-terminal XBJ1_0845 PF11761 Cobalamin biosynthesis central region XBJ1_0845 PF01890 Cobalamin synthesis G C-terminus XBJ1_0846 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_0847 PF05175 Methyltransferase small domain XBJ1_0848 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_0849 PF01888 CbiD XBJ1_0850 PF02570 Precorrin-8X methylmutase XBJ1_0851 PF03186 CobD/Cbib protein XBJ1_0852 PF07685 CobB/CobQ-like glutamine amidotransferase domain XBJ1_0852 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XBJ1_0853 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_0853 PF14824 Sirohaem biosynthesis protein central XBJ1_0853 PF10414 Sirohaem synthase dimerisation region XBJ1_0854 PF00155 Aminotransferase class I and II XBJ1_0855 PF00288 GHMP kinases N terminal domain XBJ1_0856 PF01588 Putative tRNA binding domain XBJ1_0857 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_0860 PF03400 IS1 transposase XBJ1_0862 PF03400 IS1 transposase XBJ1_0863 PF03811 InsA N-terminal domain XBJ1_0863 PF12759 InsA C-terminal domain XBJ1_0864 PF03400 IS1 transposase XBJ1_0865 PF01047 MarR family XBJ1_0866 PF01557 Fumarylacetoacetate (FAA) hydrolase family XBJ1_0867 PF01557 Fumarylacetoacetate (FAA) hydrolase family XBJ1_0868 PF00171 Aldehyde dehydrogenase family XBJ1_0869 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XBJ1_0870 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase XBJ1_0871 PF00171 Aldehyde dehydrogenase family XBJ1_0872 PF01557 Fumarylacetoacetate (FAA) hydrolase family XBJ1_0873 PF03328 HpcH/HpaI aldolase/citrate lyase family XBJ1_0874 PF07690 Major Facilitator Superfamily XBJ1_0876 PF13610 DDE domain XBJ1_0878 PF01435 Peptidase family M48 XBJ1_0879 PF00209 Sodium:neurotransmitter symporter family XBJ1_0882 PF03400 IS1 transposase XBJ1_0883 PF03811 InsA N-terminal domain XBJ1_0883 PF12759 InsA C-terminal domain XBJ1_0886 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XBJ1_0886 PF02403 Seryl-tRNA synthetase N-terminal domain XBJ1_0887 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_0887 PF16193 AAA C-terminal domain XBJ1_0887 PF12002 MgsA AAA+ ATPase C terminal XBJ1_0888 PF03548 Outer membrane lipoprotein carrier protein LolA XBJ1_0889 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XBJ1_0889 PF17854 FtsK alpha domain XBJ1_0889 PF09397 Ftsk gamma domain XBJ1_0889 PF01580 FtsK/SpoIIIE family XBJ1_0890 PF01037 Lrp/AsnC ligand binding domain XBJ1_0892 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_0893 PF00005 ABC transporter XBJ1_0893 PF00664 ABC transporter transmembrane region XBJ1_0894 PF00664 ABC transporter transmembrane region XBJ1_0894 PF00005 ABC transporter XBJ1_0895 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XBJ1_0897 PF01176 Translation initiation factor 1A / IF-1 XBJ1_0898 PF02861 Clp amino terminal domain, pathogenicity island component XBJ1_0898 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_0898 PF07724 AAA domain (Cdc48 subfamily) XBJ1_0898 PF17871 AAA lid domain XBJ1_0898 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_0899 PF02617 ATP-dependent Clp protease adaptor protein ClpS XBJ1_0900 PF00313 'Cold-shock' DNA-binding domain XBJ1_0901 PF03956 Lysine exporter LysO XBJ1_0902 PF00005 ABC transporter XBJ1_0903 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_0904 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0905 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_0906 PF05958 tRNA (Uracil-5-)-methyltransferase XBJ1_0907 PF10722 Putative bacterial sensory transduction regulator XBJ1_0908 PF07214 Protein of unknown function (DUF1418) XBJ1_0909 PF00462 Glutaredoxin XBJ1_0910 PF01569 PAP2 superfamily XBJ1_0912 PF07943 Penicillin-binding protein 5, C-terminal domain XBJ1_0912 PF00768 D-alanyl-D-alanine carboxypeptidase XBJ1_0913 PF00043 Glutathione S-transferase, C-terminal domain XBJ1_0913 PF13417 Glutathione S-transferase, N-terminal domain XBJ1_0914 PF01370 NAD dependent epimerase/dehydratase family XBJ1_0916 PF08029 HisG, C-terminal domain XBJ1_0916 PF01634 ATP phosphoribosyltransferase XBJ1_0917 PF00155 Aminotransferase class I and II XBJ1_0917 PF00815 Histidinol dehydrogenase XBJ1_0918 PF00815 Histidinol dehydrogenase XBJ1_0918 PF00155 Aminotransferase class I and II XBJ1_0919 PF00475 Imidazoleglycerol-phosphate dehydratase XBJ1_0920 PF00117 Glutamine amidotransferase class-I XBJ1_0921 PF00977 Histidine biosynthesis protein XBJ1_0922 PF00977 Histidine biosynthesis protein XBJ1_0923 PF01502 Phosphoribosyl-AMP cyclohydrolase XBJ1_0923 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XBJ1_0925 PF00465 Iron-containing alcohol dehydrogenase XBJ1_0927 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XBJ1_0927 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XBJ1_0928 PF00571 CBS domain XBJ1_0928 PF03741 Integral membrane protein TerC family XBJ1_0928 PF03471 Transporter associated domain XBJ1_0929 PF03406 Phage tail fibre repeat XBJ1_0931 PF05170 AsmA family XBJ1_0932 PF00692 dUTPase XBJ1_0933 PF00485 Phosphoribulokinase / Uridine kinase family XBJ1_0934 PF10609 NUBPL iron-transfer P-loop NTPase XBJ1_0935 PF09334 tRNA synthetases class I (M) XBJ1_0935 PF01588 Putative tRNA binding domain XBJ1_0936 PF03788 LrgA family XBJ1_0938 PF04172 LrgB-like family XBJ1_0939 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XBJ1_0939 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region XBJ1_0940 PF03949 Malic enzyme, NAD binding domain XBJ1_0940 PF00390 Malic enzyme, N-terminal domain XBJ1_0942 PF02698 DUF218 domain XBJ1_0943 PF04235 Protein of unknown function (DUF418) XBJ1_0944 PF01227 GTP cyclohydrolase I XBJ1_0946 PF06779 Uncharacterised MFS-type transporter YbfB XBJ1_0947 PF00994 Probable molybdopterin binding domain XBJ1_0947 PF03454 MoeA C-terminal region (domain IV) XBJ1_0947 PF03453 MoeA N-terminal region (domain I and II) XBJ1_0948 PF00899 ThiF family XBJ1_0953 PF00149 Calcineurin-like phosphoesterase XBJ1_0954 PF00005 ABC transporter XBJ1_0954 PF12848 ABC transporter XBJ1_0959 PF03641 Possible lysine decarboxylase XBJ1_0960 PF00892 EamA-like transporter family XBJ1_0962 PF00210 Ferritin-like domain XBJ1_0963 PF08274 PhnA Zinc-Ribbon XBJ1_0963 PF03831 PhnA domain XBJ1_0964 PF13307 Helicase C-terminal domain XBJ1_0964 PF00270 DEAD/DEAH box helicase XBJ1_0964 PF06733 DEAD_2 XBJ1_0966 PF00581 Rhodanese-like domain XBJ1_0967 PF04226 Transglycosylase associated protein XBJ1_0968 PF01207 Dihydrouridine synthase (Dus) XBJ1_0969 PF00270 DEAD/DEAH box helicase XBJ1_0969 PF00271 Helicase conserved C-terminal domain XBJ1_0970 PF09209 Tetracyclin repressor-like, C-terminal domain XBJ1_0970 PF00440 Bacterial regulatory proteins, tetR family XBJ1_0971 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XBJ1_0972 PF00005 ABC transporter XBJ1_0975 PF01027 Inhibitor of apoptosis-promoting Bax1 XBJ1_0976 PF02391 MoaE protein XBJ1_0977 PF02597 ThiS family XBJ1_0978 PF01967 MoaC family XBJ1_0979 PF06463 Molybdenum Cofactor Synthesis C XBJ1_0979 PF04055 Radical SAM superfamily XBJ1_0980 PF01933 Uncharacterised protein family UPF0052 XBJ1_0981 PF02151 UvrB/uvrC motif XBJ1_0981 PF04851 Type III restriction enzyme, res subunit XBJ1_0981 PF17757 UvrB interaction domain XBJ1_0981 PF12344 Ultra-violet resistance protein B XBJ1_0981 PF00271 Helicase conserved C-terminal domain XBJ1_0982 PF00589 Phage integrase family XBJ1_0982 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_0984 PF07022 Bacteriophage CI repressor helix-turn-helix domain XBJ1_0984 PF16452 Bacteriophage CI repressor C-terminal domain XBJ1_0986 PF06892 Phage regulatory protein CII (CP76) XBJ1_0988 PF17282 Family of unknown function (DUF5347) XBJ1_0992 PF05840 Bacteriophage replication gene A protein (GPA) XBJ1_1017 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XBJ1_1023 PF08241 Methyltransferase domain XBJ1_1024 PF00155 Aminotransferase class I and II XBJ1_1025 PF06968 Biotin and Thiamin Synthesis associated domain XBJ1_1025 PF04055 Radical SAM superfamily XBJ1_1026 PF00202 Aminotransferase class-III XBJ1_1028 PF10282 Lactonase, 7-bladed beta-propeller XBJ1_1030 PF03459 TOBE domain XBJ1_1030 PF00005 ABC transporter XBJ1_1031 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_1033 PF10766 Multidrug efflux pump-associated protein AcrZ XBJ1_1035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_1035 PF03459 TOBE domain XBJ1_1036 PF00005 ABC transporter XBJ1_1038 PF00300 Histidine phosphatase superfamily (branch 1) XBJ1_1039 PF00793 DAHP synthetase I family XBJ1_1040 PF04973 Nicotinamide mononucleotide transporter XBJ1_1042 PF13174 Tetratricopeptide repeat XBJ1_1042 PF16331 TolA binding protein trimerisation XBJ1_1043 PF00691 OmpA family XBJ1_1044 PF07676 WD40-like Beta Propeller Repeat XBJ1_1044 PF04052 TolB amino-terminal domain XBJ1_1045 PF06519 TolA C-terminal XBJ1_1046 PF02472 Biopolymer transport protein ExbD/TolR XBJ1_1047 PF01618 MotA/TolQ/ExbB proton channel family XBJ1_1048 PF03061 Thioesterase superfamily XBJ1_1049 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) XBJ1_1051 PF08173 Membrane bound YbgT-like protein XBJ1_1052 PF02322 Cytochrome bd terminal oxidase subunit II XBJ1_1053 PF01654 Cytochrome bd terminal oxidase subunit I XBJ1_1054 PF02629 CoA binding domain XBJ1_1054 PF00549 CoA-ligase XBJ1_1055 PF08442 ATP-grasp domain XBJ1_1055 PF00549 CoA-ligase XBJ1_1056 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XBJ1_1056 PF02817 e3 binding domain XBJ1_1056 PF00364 Biotin-requiring enzyme XBJ1_1057 PF02779 Transketolase, pyrimidine binding domain XBJ1_1057 PF16870 2-oxoglutarate dehydrogenase C-terminal XBJ1_1057 PF00676 Dehydrogenase E1 component XBJ1_1057 PF16078 2-oxoglutarate dehydrogenase N-terminus XBJ1_1058 PF13085 2Fe-2S iron-sulfur cluster binding domain XBJ1_1059 PF00890 FAD binding domain XBJ1_1059 PF02910 Fumarate reductase flavoprotein C-term XBJ1_1060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XBJ1_1061 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XBJ1_1062 PF00285 Citrate synthase, C-terminal domain XBJ1_1064 PF07690 Major Facilitator Superfamily XBJ1_1065 PF01784 NIF3 (NGG1p interacting factor 3) XBJ1_1066 PF10725 Protein of unknown function (DUF2517) XBJ1_1067 PF03814 Potassium-transporting ATPase A subunit XBJ1_1069 PF02669 K+-transporting ATPase, c chain XBJ1_1070 PF13493 Domain of unknown function (DUF4118) XBJ1_1070 PF02702 Osmosensitive K+ channel His kinase sensor domain XBJ1_1070 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_1070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_1070 PF13492 GAF domain XBJ1_1071 PF00072 Response regulator receiver domain XBJ1_1071 PF00486 Transcriptional regulatory protein, C terminal XBJ1_1072 PF18494 Pullulanase Ins domain XBJ1_1072 PF03714 Bacterial pullanase-associated domain XBJ1_1072 PF17967 Pullulanase N2 domain XBJ1_1072 PF11852 Domain of unknown function (DUF3372) XBJ1_1072 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XBJ1_1074 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XBJ1_1074 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XBJ1_1074 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XBJ1_1074 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XBJ1_1075 PF17206 SeqA protein N-terminal domain XBJ1_1075 PF03925 SeqA protein C-terminal domain XBJ1_1076 PF12697 Alpha/beta hydrolase family XBJ1_1084 PF18228 CdiI N-terminal domain XBJ1_1085 PF05594 Haemagluttinin repeat XBJ1_1085 PF13332 Hemagglutinin repeat XBJ1_1085 PF05860 haemagglutination activity domain XBJ1_1085 PF04829 Pre-toxin domain with VENN motif XBJ1_1085 PF15526 Novel toxin 21 XBJ1_1087 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_1089 PF07634 RtxA repeat XBJ1_1089 PF11647 Membrane Localization Domain XBJ1_1089 PF16671 Actin cross-linking domain XBJ1_1089 PF12146 Serine aminopeptidase, S33 XBJ1_1089 PF11713 Peptidase C80 family XBJ1_1090 PF02794 RTX toxin acyltransferase family XBJ1_1092 PF03412 Peptidase C39 family XBJ1_1092 PF00005 ABC transporter XBJ1_1092 PF00664 ABC transporter transmembrane region XBJ1_1094 PF00005 ABC transporter XBJ1_1094 PF00664 ABC transporter transmembrane region XBJ1_1094 PF03412 Peptidase C39 family XBJ1_1095 PF07883 Cupin domain XBJ1_1095 PF12833 Helix-turn-helix domain XBJ1_1096 PF00589 Phage integrase family XBJ1_1098 PF02369 Bacterial Ig-like domain (group 1) XBJ1_1098 PF09134 Invasin, domain 3 XBJ1_1098 PF11924 Inverse autotransporter, beta-domain XBJ1_1099 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XBJ1_1100 PF00873 AcrB/AcrD/AcrF family XBJ1_1103 PF00589 Phage integrase family XBJ1_1104 PF02369 Bacterial Ig-like domain (group 1) XBJ1_1104 PF11924 Inverse autotransporter, beta-domain XBJ1_1104 PF09134 Invasin, domain 3 XBJ1_1106 PF01402 Ribbon-helix-helix protein, copG family XBJ1_1107 PF00258 Flavodoxin XBJ1_1108 PF01475 Ferric uptake regulator family XBJ1_1109 PF02838 Glycosyl hydrolase family 20, domain 2 XBJ1_1109 PF00728 Glycosyl hydrolase family 20, catalytic domain XBJ1_1109 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain XBJ1_1109 PF03173 Putative carbohydrate binding domain XBJ1_1110 PF00749 tRNA synthetases class I (E and Q), catalytic domain XBJ1_1110 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XBJ1_1111 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XBJ1_1112 PF07690 Major Facilitator Superfamily XBJ1_1113 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_1114 PF13358 DDE superfamily endonuclease XBJ1_1116 PF13592 Winged helix-turn helix XBJ1_1116 PF13358 DDE superfamily endonuclease XBJ1_1117 PF02796 Helix-turn-helix domain of resolvase XBJ1_1117 PF00239 Resolvase, N terminal domain XBJ1_1118 PF07690 Major Facilitator Superfamily XBJ1_1119 PF00205 Thiamine pyrophosphate enzyme, central domain XBJ1_1119 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XBJ1_1119 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XBJ1_1124 PF16295 Tetracyclin repressor-like, C-terminal domain XBJ1_1124 PF00440 Bacterial regulatory proteins, tetR family XBJ1_1126 PF00550 Phosphopantetheine attachment site XBJ1_1126 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1126 PF00501 AMP-binding enzyme XBJ1_1126 PF00668 Condensation domain XBJ1_1127 PF16450 Proteasomal ATPase OB C-terminal domain XBJ1_1127 PF17758 Proteasomal ATPase OB N-terminal domain XBJ1_1127 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_1136 PF03811 InsA N-terminal domain XBJ1_1136 PF12759 InsA C-terminal domain XBJ1_1137 PF01527 Transposase XBJ1_1144 PF03781 Sulfatase-modifying factor enzyme 1 XBJ1_1146 PF00005 ABC transporter XBJ1_1152 PF00092 von Willebrand factor type A domain XBJ1_1154 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1154 PF01548 Transposase XBJ1_1158 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XBJ1_1158 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XBJ1_1160 PF00589 Phage integrase family XBJ1_1171 PF00436 Single-strand binding protein family XBJ1_1190 PF00772 DnaB-like helicase N terminal domain XBJ1_1190 PF03796 DnaB-like helicase C terminal domain XBJ1_1194 PF00149 Calcineurin-like phosphoesterase XBJ1_1196 PF05866 Endodeoxyribonuclease RusA XBJ1_1203 PF03245 Bacteriophage Rz lysis protein XBJ1_1205 PF10549 ORF11CD3 domain XBJ1_1205 PF09669 Phage regulatory protein Rha (Phage_pRha) XBJ1_1208 PF13358 DDE superfamily endonuclease XBJ1_1210 PF03592 Terminase small subunit XBJ1_1210 PF10668 Phage terminase small subunit XBJ1_1250 PF01695 IstB-like ATP binding protein XBJ1_1251 PF00772 DnaB-like helicase N terminal domain XBJ1_1251 PF03796 DnaB-like helicase C terminal domain XBJ1_1252 PF06530 Phage antitermination protein Q XBJ1_1254 PF01555 DNA methylase XBJ1_1255 PF01381 Helix-turn-helix XBJ1_1258 PF00959 Phage lysozyme XBJ1_1264 PF03354 Phage Terminase XBJ1_1266 PF04860 Phage portal protein XBJ1_1290 PF05973 Phage derived protein Gp49-like (DUF891) XBJ1_1291 PF01381 Helix-turn-helix XBJ1_1296 PF05593 RHS Repeat XBJ1_1296 PF03527 RHS protein XBJ1_1298 PF03527 RHS protein XBJ1_1298 PF05593 RHS Repeat XBJ1_1298 PF14220 Domain of unknown function (DUF4329) XBJ1_1301 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_1302 PF01381 Helix-turn-helix XBJ1_1305 PF05593 RHS Repeat XBJ1_1305 PF03527 RHS protein XBJ1_1308 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_1311 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1311 PF01548 Transposase XBJ1_1315 PF13356 Arm DNA-binding domain XBJ1_1315 PF00589 Phage integrase family XBJ1_1315 PF14659 Phage integrase, N-terminal SAM-like domain XBJ1_1316 PF14659 Phage integrase, N-terminal SAM-like domain XBJ1_1316 PF13356 Arm DNA-binding domain XBJ1_1316 PF00589 Phage integrase family XBJ1_1321 PF03400 IS1 transposase XBJ1_1322 PF12759 InsA C-terminal domain XBJ1_1322 PF03811 InsA N-terminal domain XBJ1_1329 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1329 PF01548 Transposase XBJ1_1343 PF02954 Bacterial regulatory protein, Fis family XBJ1_1343 PF00158 Sigma-54 interaction domain XBJ1_1343 PF06506 Propionate catabolism activator XBJ1_1345 PF00285 Citrate synthase, C-terminal domain XBJ1_1346 PF03972 MmgE/PrpD family XBJ1_1347 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1347 PF00501 AMP-binding enzyme XBJ1_1347 PF16177 Acetyl-coenzyme A synthetase N-terminus XBJ1_1348 PF13417 Glutathione S-transferase, N-terminal domain XBJ1_1348 PF00043 Glutathione S-transferase, C-terminal domain XBJ1_1350 PF01292 Prokaryotic cytochrome b561 XBJ1_1351 PF04264 YceI-like domain XBJ1_1358 PF00230 Major intrinsic protein XBJ1_1360 PF03974 Ecotin XBJ1_1361 PF04325 Protein of unknown function (DUF465) XBJ1_1362 PF04606 Ogr/Delta-like zinc finger XBJ1_1369 PF17482 Phage tail sheath C-terminal domain XBJ1_1369 PF04984 Phage tail sheath protein subtilisin-like domain XBJ1_1372 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XBJ1_1377 PF13333 Integrase core domain XBJ1_1377 PF00665 Integrase core domain XBJ1_1377 PF13276 HTH-like domain XBJ1_1378 PF13333 Integrase core domain XBJ1_1378 PF00665 Integrase core domain XBJ1_1379 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XBJ1_1381 PF07484 Phage Tail Collar Domain XBJ1_1387 PF00959 Phage lysozyme XBJ1_1391 PF06183 DinI-like family XBJ1_1393 PF05840 Bacteriophage replication gene A protein (GPA) XBJ1_1395 PF07022 Bacteriophage CI repressor helix-turn-helix domain XBJ1_1395 PF16452 Bacteriophage CI repressor C-terminal domain XBJ1_1396 PF13302 Acetyltransferase (GNAT) domain XBJ1_1399 PF12833 Helix-turn-helix domain XBJ1_1402 PF02677 Epoxyqueuosine reductase QueH XBJ1_1404 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1404 PF01548 Transposase XBJ1_1406 PF12759 InsA C-terminal domain XBJ1_1406 PF03811 InsA N-terminal domain XBJ1_1407 PF03400 IS1 transposase XBJ1_1409 PF03400 IS1 transposase XBJ1_1410 PF03811 InsA N-terminal domain XBJ1_1410 PF12759 InsA C-terminal domain XBJ1_1412 PF01420 Type I restriction modification DNA specificity domain XBJ1_1413 PF12161 HsdM N-terminal domain XBJ1_1413 PF02384 N-6 DNA Methylase XBJ1_1414 PF02646 RmuC family XBJ1_1415 PF08463 EcoEI R protein C-terminal XBJ1_1415 PF00271 Helicase conserved C-terminal domain XBJ1_1415 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XBJ1_1415 PF04851 Type III restriction enzyme, res subunit XBJ1_1416 PF02954 Bacterial regulatory protein, Fis family XBJ1_1416 PF00158 Sigma-54 interaction domain XBJ1_1416 PF00072 Response regulator receiver domain XBJ1_1421 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_1424 PF13340 Putative transposase of IS4/5 family (DUF4096) XBJ1_1427 PF03811 InsA N-terminal domain XBJ1_1427 PF12759 InsA C-terminal domain XBJ1_1428 PF03400 IS1 transposase XBJ1_1432 PF13358 DDE superfamily endonuclease XBJ1_1435 PF00857 Isochorismatase family XBJ1_1435 PF00550 Phosphopantetheine attachment site XBJ1_1436 PF00501 AMP-binding enzyme XBJ1_1436 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1437 PF00425 chorismate binding enzyme XBJ1_1438 PF00593 TonB dependent receptor XBJ1_1438 PF07715 TonB-dependent Receptor Plug Domain XBJ1_1439 PF00756 Putative esterase XBJ1_1439 PF11806 Domain of unknown function (DUF3327) XBJ1_1440 PF03621 MbtH-like protein XBJ1_1441 PF00668 Condensation domain XBJ1_1441 PF00501 AMP-binding enzyme XBJ1_1441 PF00550 Phosphopantetheine attachment site XBJ1_1441 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1442 PF00005 ABC transporter XBJ1_1443 PF01032 FecCD transport family XBJ1_1444 PF01032 FecCD transport family XBJ1_1445 PF05977 Transmembrane secretion effector XBJ1_1446 PF01497 Periplasmic binding protein XBJ1_1449 PF00491 Arginase family XBJ1_1451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_1451 PF03466 LysR substrate binding domain XBJ1_1452 PF00330 Aconitase family (aconitate hydratase) XBJ1_1453 PF00694 Aconitase C-terminal domain XBJ1_1455 PF03605 Anaerobic c4-dicarboxylate membrane transporter XBJ1_1456 PF13098 Thioredoxin-like domain XBJ1_1456 PF02683 Cytochrome C biogenesis protein transmembrane region XBJ1_1456 PF11412 Disulphide bond corrector protein DsbC XBJ1_1459 PF00589 Phage integrase family XBJ1_1464 PF06755 CbtA_toxin of type IV toxin-antitoxin system XBJ1_1467 PF03230 Antirestriction protein XBJ1_1480 PF01548 Transposase XBJ1_1480 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1484 PF00069 Protein kinase domain XBJ1_1487 PF00072 Response regulator receiver domain XBJ1_1487 PF00158 Sigma-54 interaction domain XBJ1_1490 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_1490 PF00589 Phage integrase family XBJ1_1501 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_1508 PF07979 Intimin C-type lectin domain XBJ1_1508 PF02369 Bacterial Ig-like domain (group 1) XBJ1_1508 PF11924 Inverse autotransporter, beta-domain XBJ1_1508 PF09134 Invasin, domain 3 XBJ1_1540 PF13693 Winged helix-turn-helix DNA-binding XBJ1_1545 PF00436 Single-strand binding protein family XBJ1_1548 PF01751 Toprim domain XBJ1_1548 PF01131 DNA topoisomerase XBJ1_1554 PF03796 DnaB-like helicase C terminal domain XBJ1_1554 PF00772 DnaB-like helicase N terminal domain XBJ1_1557 PF00589 Phage integrase family XBJ1_1559 PF03050 Transposase IS66 family XBJ1_1559 PF13817 IS66 C-terminal element XBJ1_1559 PF13007 Transposase C of IS166 homeodomain XBJ1_1559 PF13005 zinc-finger binding domain of transposase IS66 XBJ1_1565 PF06755 CbtA_toxin of type IV toxin-antitoxin system XBJ1_1568 PF03230 Antirestriction protein XBJ1_1572 PF18413 Neuraminidase-like domain XBJ1_1572 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain XBJ1_1573 PF12255 Insecticide toxin TcdB middle/C-terminal region XBJ1_1573 PF03534 Salmonella virulence plasmid 65kDa B protein XBJ1_1573 PF12256 Insecticide toxin TcdB middle/N-terminal region XBJ1_1574 PF05785 Rho-activating domain of cytotoxic necrotizing factor XBJ1_1574 PF18807 Tripartite Tc toxins repeat XBJ1_1575 PF13007 Transposase C of IS166 homeodomain XBJ1_1575 PF13817 IS66 C-terminal element XBJ1_1575 PF13005 zinc-finger binding domain of transposase IS66 XBJ1_1575 PF03050 Transposase IS66 family XBJ1_1576 PF02796 Helix-turn-helix domain of resolvase XBJ1_1576 PF00239 Resolvase, N terminal domain XBJ1_1582 PF12759 InsA C-terminal domain XBJ1_1582 PF03811 InsA N-terminal domain XBJ1_1583 PF03400 IS1 transposase XBJ1_1586 PF00296 Luciferase-like monooxygenase XBJ1_1588 PF00005 ABC transporter XBJ1_1589 PF13472 GDSL-like Lipase/Acylhydrolase family XBJ1_1590 PF00106 short chain dehydrogenase XBJ1_1591 PF00085 Thioredoxin XBJ1_1592 PF16200 C-terminal region of band_7 XBJ1_1592 PF01145 SPFH domain / Band 7 family XBJ1_1594 PF13411 MerR HTH family regulatory protein XBJ1_1595 PF00403 Heavy-metal-associated domain XBJ1_1596 PF01963 TraB family XBJ1_1597 PF04073 Aminoacyl-tRNA editing domain XBJ1_1598 PF02872 5'-nucleotidase, C-terminal domain XBJ1_1598 PF00149 Calcineurin-like phosphoesterase XBJ1_1600 PF07690 Major Facilitator Superfamily XBJ1_1601 PF02254 TrkA-N domain XBJ1_1601 PF00999 Sodium/hydrogen exchanger family XBJ1_1602 PF00294 pfkB family carbohydrate kinase XBJ1_1603 PF02706 Chain length determinant protein XBJ1_1604 PF00762 Ferrochelatase XBJ1_1605 PF05191 Adenylate kinase, active site lid XBJ1_1606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_1606 PF00183 Hsp90 protein XBJ1_1609 PF13662 Toprim domain XBJ1_1609 PF02132 RecR protein XBJ1_1610 PF02575 YbaB/EbfC DNA-binding family XBJ1_1611 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XBJ1_1611 PF12170 DNA polymerase III tau subunit V interacting with alpha XBJ1_1611 PF12169 DNA polymerase III subunits gamma and tau domain III XBJ1_1612 PF00156 Phosphoribosyl transferase domain XBJ1_1614 PF10689 Protein of unknown function (DUF2496) XBJ1_1615 PF12795 Mechanosensitive ion channel porin domain XBJ1_1615 PF00924 Mechanosensitive ion channel XBJ1_1615 PF12794 Mechanosensitive ion channel inner membrane domain 1 XBJ1_1616 PF00440 Bacterial regulatory proteins, tetR family XBJ1_1616 PF08361 MAATS-type transcriptional repressor, C-terminal region XBJ1_1617 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XBJ1_1617 PF00529 HlyD membrane-fusion protein of T1SS XBJ1_1618 PF00873 AcrB/AcrD/AcrF family XBJ1_1620 PF05321 Haemolysin expression modulating protein XBJ1_1622 PF00909 Ammonium Transporter Family XBJ1_1623 PF00543 Nitrogen regulatory protein P-II XBJ1_1625 PF00005 ABC transporter XBJ1_1625 PF00664 ABC transporter transmembrane region XBJ1_1626 PF00664 ABC transporter transmembrane region XBJ1_1626 PF00005 ABC transporter XBJ1_1628 PF13404 AsnC-type helix-turn-helix domain XBJ1_1628 PF01037 Lrp/AsnC ligand binding domain XBJ1_1629 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_1630 PF06508 Queuosine biosynthesis protein QueC XBJ1_1633 PF13145 PPIC-type PPIASE domain XBJ1_1634 PF00216 Bacterial DNA-binding protein XBJ1_1635 PF05362 Lon protease (S16) C-terminal proteolytic domain XBJ1_1635 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_1635 PF02190 ATP-dependent protease La (LON) substrate-binding domain XBJ1_1636 PF06689 ClpX C4-type zinc finger XBJ1_1636 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_1636 PF07724 AAA domain (Cdc48 subfamily) XBJ1_1637 PF00574 Clp protease XBJ1_1638 PF05698 Bacterial trigger factor protein (TF) C-terminus XBJ1_1638 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XBJ1_1638 PF05697 Bacterial trigger factor protein (TF) XBJ1_1640 PF01722 BolA-like protein XBJ1_1641 PF08139 Prokaryotic membrane lipoprotein lipid attachment site XBJ1_1641 PF03923 Uncharacterized lipoprotein XBJ1_1642 PF07690 Major Facilitator Superfamily XBJ1_1645 PF03502 Nucleoside-specific channel-forming protein, Tsx XBJ1_1646 PF06481 COX Aromatic Rich Motif XBJ1_1646 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XBJ1_1647 PF00115 Cytochrome C and Quinol oxidase polypeptide I XBJ1_1648 PF00510 Cytochrome c oxidase subunit III XBJ1_1649 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XBJ1_1650 PF01040 UbiA prenyltransferase family XBJ1_1651 PF07690 Major Facilitator Superfamily XBJ1_1652 PF00704 Glycosyl hydrolases family 18 XBJ1_1653 PF04461 Protein of unknown function (DUF520) XBJ1_1654 PF02558 Ketopantoate reductase PanE/ApbA XBJ1_1654 PF08546 Ketopantoate reductase PanE/ApbA C terminal XBJ1_1655 PF01965 DJ-1/PfpI family XBJ1_1656 PF02926 THUMP domain XBJ1_1656 PF02568 Thiamine biosynthesis protein (ThiI) XBJ1_1657 PF02609 Exonuclease VII small subunit XBJ1_1658 PF00348 Polyprenyl synthetase XBJ1_1659 PF02779 Transketolase, pyrimidine binding domain XBJ1_1659 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XBJ1_1659 PF02780 Transketolase, C-terminal domain XBJ1_1660 PF12544 Lysine-2,3-aminomutase XBJ1_1660 PF04055 Radical SAM superfamily XBJ1_1667 PF01470 Pyroglutamyl peptidase XBJ1_1668 PF04608 Phosphatidylglycerophosphatase A XBJ1_1669 PF02769 AIR synthase related protein, C-terminal domain XBJ1_1669 PF00586 AIR synthase related protein, N-terminal domain XBJ1_1670 PF01029 NusB family XBJ1_1671 PF00885 6,7-dimethyl-8-ribityllumazine synthase XBJ1_1672 PF01872 RibD C-terminal domain XBJ1_1672 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XBJ1_1673 PF03477 ATP cone domain XBJ1_1676 PF02355 Protein export membrane protein XBJ1_1676 PF07549 SecD/SecF GG Motif XBJ1_1677 PF02355 Protein export membrane protein XBJ1_1677 PF13721 SecD export protein N-terminal TM region XBJ1_1677 PF07549 SecD/SecF GG Motif XBJ1_1678 PF02699 Preprotein translocase subunit XBJ1_1679 PF01702 Queuine tRNA-ribosyltransferase XBJ1_1680 PF02547 Queuosine biosynthesis protein XBJ1_1681 PF04336 Acyl carrier protein phosphodiesterase XBJ1_1683 PF10417 C-terminal domain of 1-Cys peroxiredoxin XBJ1_1683 PF00578 AhpC/TSA family XBJ1_1685 PF05525 Branched-chain amino acid transport protein XBJ1_1687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_1687 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_1687 PF00989 PAS fold XBJ1_1687 PF11808 Phosphate regulon sensor protein PhoR XBJ1_1688 PF00486 Transcriptional regulatory protein, C terminal XBJ1_1688 PF00072 Response regulator receiver domain XBJ1_1689 PF00149 Calcineurin-like phosphoesterase XBJ1_1689 PF12320 Type 5 capsule protein repressor C-terminal domain XBJ1_1690 PF13476 AAA domain XBJ1_1692 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_1693 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_1694 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_1695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_1696 PF00149 Calcineurin-like phosphoesterase XBJ1_1696 PF02872 5'-nucleotidase, C-terminal domain XBJ1_1697 PF00149 Calcineurin-like phosphoesterase XBJ1_1698 PF02872 5'-nucleotidase, C-terminal domain XBJ1_1698 PF00149 Calcineurin-like phosphoesterase XBJ1_1700 PF13609 Gram-negative porin XBJ1_1702 PF00480 ROK family XBJ1_1703 PF04381 Putative exonuclease, RdgC XBJ1_1704 PF00267 Gram-negative porin XBJ1_1705 PF08361 MAATS-type transcriptional repressor, C-terminal region XBJ1_1705 PF00440 Bacterial regulatory proteins, tetR family XBJ1_1706 PF02492 CobW/HypB/UreG, nucleotide-binding domain XBJ1_1708 PF03400 IS1 transposase XBJ1_1709 PF03811 InsA N-terminal domain XBJ1_1709 PF12759 InsA C-terminal domain XBJ1_1713 PF02472 Biopolymer transport protein ExbD/TolR XBJ1_1714 PF01618 MotA/TolQ/ExbB proton channel family XBJ1_1716 PF01053 Cys/Met metabolism PLP-dependent enzyme XBJ1_1717 PF09335 SNARE associated Golgi protein XBJ1_1718 PF00248 Aldo/keto reductase family XBJ1_1720 PF02142 MGS-like domain XBJ1_1720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XBJ1_1720 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XBJ1_1721 PF00117 Glutamine amidotransferase class-I XBJ1_1721 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XBJ1_1722 PF01113 Dihydrodipicolinate reductase, N-terminus XBJ1_1722 PF05173 Dihydrodipicolinate reductase, C-terminus XBJ1_1723 PF02401 LytB protein XBJ1_1724 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XBJ1_1725 PF01252 Signal peptidase (SPase) II XBJ1_1726 PF00133 tRNA synthetases class I (I, L, M and V) XBJ1_1726 PF08264 Anticodon-binding domain of tRNA XBJ1_1726 PF06827 Zinc finger found in FPG and IleRS XBJ1_1727 PF06574 FAD synthetase XBJ1_1727 PF01687 Riboflavin kinase XBJ1_1729 PF01649 Ribosomal protein S20 XBJ1_1730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_1730 PF03466 LysR substrate binding domain XBJ1_1731 PF06965 Na+/H+ antiporter 1 XBJ1_1733 PF03811 InsA N-terminal domain XBJ1_1733 PF12759 InsA C-terminal domain XBJ1_1734 PF03400 IS1 transposase XBJ1_1735 PF07690 Major Facilitator Superfamily XBJ1_1736 PF00733 Asparagine synthase XBJ1_1736 PF13537 Glutamine amidotransferase domain XBJ1_1737 PF13358 DDE superfamily endonuclease XBJ1_1738 PF13302 Acetyltransferase (GNAT) domain XBJ1_1739 PF00574 Clp protease XBJ1_1741 PF01556 DnaJ C terminal domain XBJ1_1741 PF00684 DnaJ central domain XBJ1_1741 PF00226 DnaJ domain XBJ1_1742 PF00012 Hsp70 protein XBJ1_1743 PF01184 GPR1/FUN34/yaaH family XBJ1_1744 PF08946 Osmosensory transporter coiled coil XBJ1_1744 PF00083 Sugar (and other) transporter XBJ1_1749 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XBJ1_1749 PF02770 Acyl-CoA dehydrogenase, middle domain XBJ1_1749 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XBJ1_1751 PF00732 GMC oxidoreductase XBJ1_1751 PF05199 GMC oxidoreductase XBJ1_1752 PF00550 Phosphopantetheine attachment site XBJ1_1752 PF00668 Condensation domain XBJ1_1752 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1752 PF00501 AMP-binding enzyme XBJ1_1754 PF03400 IS1 transposase XBJ1_1755 PF03811 InsA N-terminal domain XBJ1_1755 PF12759 InsA C-terminal domain XBJ1_1756 PF00733 Asparagine synthase XBJ1_1756 PF13537 Glutamine amidotransferase domain XBJ1_1757 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XBJ1_1760 PF03400 IS1 transposase XBJ1_1762 PF03811 InsA N-terminal domain XBJ1_1762 PF12759 InsA C-terminal domain XBJ1_1764 PF03811 InsA N-terminal domain XBJ1_1764 PF12759 InsA C-terminal domain XBJ1_1765 PF03400 IS1 transposase XBJ1_1768 PF00082 Subtilase family XBJ1_1768 PF03797 Autotransporter beta-domain XBJ1_1768 PF12951 Passenger-associated-transport-repeat XBJ1_1773 PF03350 Uncharacterized protein family, UPF0114 XBJ1_1777 PF15608 PELOTA RNA binding domain XBJ1_1777 PF11202 Phosphoribosyl transferase (PRTase) XBJ1_1780 PF02342 TerD domain XBJ1_1781 PF02342 TerD domain XBJ1_1782 PF05099 Tellurite resistance protein TerB XBJ1_1783 PF03741 Integral membrane protein TerC family XBJ1_1784 PF02342 TerD domain XBJ1_1785 PF02342 TerD domain XBJ1_1786 PF00589 Phage integrase family XBJ1_1790 PF03400 IS1 transposase XBJ1_1795 PF00136 DNA polymerase family B XBJ1_1795 PF03104 DNA polymerase family B, exonuclease domain XBJ1_1796 PF18337 RapA N-terminal Tudor like domain XBJ1_1796 PF00271 Helicase conserved C-terminal domain XBJ1_1796 PF12137 RNA polymerase recycling family C-terminal XBJ1_1796 PF00176 SNF2 family N-terminal domain XBJ1_1796 PF18339 RapA N-terminal Tudor like domain 1 XBJ1_1797 PF00849 RNA pseudouridylate synthase XBJ1_1798 PF05099 Tellurite resistance protein TerB XBJ1_1798 PF00226 DnaJ domain XBJ1_1799 PF03968 OstA-like protein XBJ1_1799 PF04453 LPS transport system D XBJ1_1800 PF09312 SurA N-terminal domain XBJ1_1801 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XBJ1_1802 PF00398 Ribosomal RNA adenine dimethylase XBJ1_1803 PF04379 ApaG domain XBJ1_1804 PF00149 Calcineurin-like phosphoesterase XBJ1_1805 PF00186 Dihydrofolate reductase XBJ1_1807 PF07731 Multicopper oxidase XBJ1_1807 PF07732 Multicopper oxidase XBJ1_1808 PF01553 Acyltransferase XBJ1_1809 PF03989 DNA gyrase C-terminal domain, beta-propeller XBJ1_1809 PF00521 DNA gyrase/topoisomerase IV, subunit A XBJ1_1810 PF01751 Toprim domain XBJ1_1810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_1810 PF00986 DNA gyrase B subunit, carboxyl terminus XBJ1_1810 PF00204 DNA gyrase B XBJ1_1811 PF05728 Uncharacterised protein family (UPF0227) XBJ1_1812 PF00149 Calcineurin-like phosphoesterase XBJ1_1813 PF00293 NUDIX domain XBJ1_1814 PF02321 Outer membrane efflux protein XBJ1_1815 PF06693 Protein of unknown function (DUF1190) XBJ1_1816 PF03738 Glutathionylspermidine synthase preATP-grasp XBJ1_1817 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XBJ1_1819 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XBJ1_1821 PF04380 Membrane fusogenic activity XBJ1_1822 PF01467 Cytidylyltransferase-like XBJ1_1822 PF00294 pfkB family carbohydrate kinase XBJ1_1823 PF03710 Glutamate-ammonia ligase adenylyltransferase XBJ1_1823 PF08335 GlnD PII-uridylyltransferase XBJ1_1824 PF01928 CYTH domain XBJ1_1826 PF08239 Bacterial SH3 domain XBJ1_1827 PF01966 HD domain XBJ1_1827 PF01743 Poly A polymerase head domain XBJ1_1827 PF12627 Probable RNA and SrmB- binding site of polymerase A XBJ1_1828 PF02152 Dihydroneopterin aldolase XBJ1_1829 PF02660 Glycerol-3-phosphate acyltransferase XBJ1_1830 PF03364 Polyketide cyclase / dehydrase and lipid transport XBJ1_1830 PF00891 O-methyltransferase domain XBJ1_1831 PF00814 Glycoprotease family XBJ1_1832 PF01165 Ribosomal protein S21 XBJ1_1833 PF08278 DNA primase DnaG DnaB-binding XBJ1_1833 PF10410 DnaB-helicase binding domain of primase XBJ1_1833 PF08275 DNA primase catalytic core, N-terminal domain XBJ1_1833 PF01807 CHC2 zinc finger XBJ1_1834 PF00140 Sigma-70 factor, region 1.2 XBJ1_1834 PF04542 Sigma-70 region 2 XBJ1_1834 PF04539 Sigma-70 region 3 XBJ1_1834 PF04546 Sigma-70, non-essential region XBJ1_1834 PF04545 Sigma-70, region 4 XBJ1_1834 PF03979 Sigma-70 factor, region 1.1 XBJ1_1837 PF06755 CbtA_toxin of type IV toxin-antitoxin system XBJ1_1838 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A XBJ1_1839 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A XBJ1_1840 PF04002 RadC-like JAB domain XBJ1_1845 PF13280 WYL domain XBJ1_1845 PF08220 DeoR-like helix-turn-helix domain XBJ1_1847 PF01926 50S ribosome-binding GTPase XBJ1_1853 PF03400 IS1 transposase XBJ1_1854 PF12759 InsA C-terminal domain XBJ1_1854 PF03811 InsA N-terminal domain XBJ1_1871 PF03811 InsA N-terminal domain XBJ1_1871 PF12759 InsA C-terminal domain XBJ1_1872 PF03400 IS1 transposase XBJ1_1874 PF13358 DDE superfamily endonuclease XBJ1_1878 PF03811 InsA N-terminal domain XBJ1_1878 PF12759 InsA C-terminal domain XBJ1_1880 PF01609 Transposase DDE domain XBJ1_1881 PF03400 IS1 transposase XBJ1_1882 PF01548 Transposase XBJ1_1882 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1885 PF13808 DDE_Tnp_1-associated XBJ1_1885 PF01609 Transposase DDE domain XBJ1_1889 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1889 PF01548 Transposase XBJ1_1890 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1890 PF01548 Transposase XBJ1_1895 PF03279 Bacterial lipid A biosynthesis acyltransferase XBJ1_1898 PF00196 Bacterial regulatory proteins, luxR family XBJ1_1899 PF13991 BssS protein family XBJ1_1900 PF01979 Amidohydrolase family XBJ1_1906 PF10777 Inner membrane protein YlaC XBJ1_1908 PF00313 'Cold-shock' DNA-binding domain XBJ1_1912 PF00690 Cation transporter/ATPase, N-terminus XBJ1_1912 PF00689 Cation transporting ATPase, C-terminus XBJ1_1913 PF00690 Cation transporter/ATPase, N-terminus XBJ1_1913 PF00689 Cation transporting ATPase, C-terminus XBJ1_1917 PF05247 Flagellar transcriptional activator (FlhD) XBJ1_1918 PF05280 Flagellar transcriptional activator (FlhC) XBJ1_1919 PF01618 MotA/TolQ/ExbB proton channel family XBJ1_1920 PF13677 Membrane MotB of proton-channel complex MotA/MotB XBJ1_1920 PF00691 OmpA family XBJ1_1921 PF09078 CheY binding XBJ1_1921 PF01584 CheW-like domain XBJ1_1921 PF01627 Hpt domain XBJ1_1921 PF02895 Signal transducing histidine kinase, homodimeric domain XBJ1_1921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_1922 PF01584 CheW-like domain XBJ1_1923 PF00672 HAMP domain XBJ1_1923 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XBJ1_1923 PF02203 Tar ligand binding domain homologue XBJ1_1924 PF00672 HAMP domain XBJ1_1924 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XBJ1_1924 PF02203 Tar ligand binding domain homologue XBJ1_1925 PF03705 CheR methyltransferase, all-alpha domain XBJ1_1925 PF01739 CheR methyltransferase, SAM binding domain XBJ1_1926 PF01339 CheB methylesterase XBJ1_1926 PF00072 Response regulator receiver domain XBJ1_1927 PF00072 Response regulator receiver domain XBJ1_1928 PF04344 Chemotaxis phosphatase, CheZ XBJ1_1934 PF03534 Salmonella virulence plasmid 65kDa B protein XBJ1_1934 PF12255 Insecticide toxin TcdB middle/C-terminal region XBJ1_1934 PF12256 Insecticide toxin TcdB middle/N-terminal region XBJ1_1936 PF00239 Resolvase, N terminal domain XBJ1_1936 PF02796 Helix-turn-helix domain of resolvase XBJ1_1937 PF01235 Sodium:alanine symporter family XBJ1_1938 PF01312 FlhB HrpN YscU SpaS Family XBJ1_1939 PF00771 FHIPEP family XBJ1_1944 PF02753 Pili assembly chaperone PapD, C-terminal domain XBJ1_1944 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XBJ1_1945 PF13953 PapC C-terminal domain XBJ1_1945 PF13954 PapC N-terminal domain XBJ1_1945 PF00577 Outer membrane usher protein XBJ1_1946 PF00419 Fimbrial protein XBJ1_1947 PF05130 FlgN protein XBJ1_1948 PF04316 Anti-sigma-28 factor, FlgM XBJ1_1949 PF13144 Chaperone for flagella basal body P-ring formation XBJ1_1949 PF17656 FlgA N-terminal domain XBJ1_1950 PF00460 Flagella basal body rod protein XBJ1_1951 PF00460 Flagella basal body rod protein XBJ1_1951 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XBJ1_1952 PF03963 Flagellar hook capping protein - N-terminal region XBJ1_1952 PF13860 FlgD Ig-like domain XBJ1_1952 PF13861 FlgD Tudor-like domain XBJ1_1953 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XBJ1_1953 PF00460 Flagella basal body rod protein XBJ1_1953 PF07559 Flagellar basal body protein FlaE XBJ1_1954 PF00460 Flagella basal body rod protein XBJ1_1954 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XBJ1_1955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XBJ1_1955 PF00460 Flagella basal body rod protein XBJ1_1957 PF02107 Flagellar L-ring protein XBJ1_1959 PF02119 Flagellar P-ring protein XBJ1_1960 PF10135 Rod binding protein XBJ1_1960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XBJ1_1961 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XBJ1_1961 PF00460 Flagella basal body rod protein XBJ1_1962 PF00669 Bacterial flagellin N-terminal helical region XBJ1_1966 PF00550 Phosphopantetheine attachment site XBJ1_1966 PF00501 AMP-binding enzyme XBJ1_1966 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1966 PF00668 Condensation domain XBJ1_1966 PF00975 Thioesterase domain XBJ1_1967 PF00550 Phosphopantetheine attachment site XBJ1_1967 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1967 PF00668 Condensation domain XBJ1_1967 PF00501 AMP-binding enzyme XBJ1_1968 PF00668 Condensation domain XBJ1_1968 PF00975 Thioesterase domain XBJ1_1968 PF00550 Phosphopantetheine attachment site XBJ1_1968 PF13193 AMP-binding enzyme C-terminal domain XBJ1_1968 PF00501 AMP-binding enzyme XBJ1_1970 PF13649 Methyltransferase domain XBJ1_1975 PF17287 POTRA domain XBJ1_1975 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XBJ1_1975 PF08479 POTRA domain, ShlB-type XBJ1_1976 PF02794 RTX toxin acyltransferase family XBJ1_1978 PF01609 Transposase DDE domain XBJ1_1978 PF13808 DDE_Tnp_1-associated XBJ1_1980 PF02371 Transposase IS116/IS110/IS902 family XBJ1_1980 PF01548 Transposase XBJ1_1982 PF03811 InsA N-terminal domain XBJ1_1982 PF12759 InsA C-terminal domain XBJ1_1983 PF03400 IS1 transposase XBJ1_1984 PF03811 InsA N-terminal domain XBJ1_1984 PF12759 InsA C-terminal domain XBJ1_1985 PF03400 IS1 transposase XBJ1_1988 PF06147 Protein of unknown function (DUF968) XBJ1_1992 PF05400 Flagellar protein FliT XBJ1_1993 PF02561 Flagellar protein FliS XBJ1_1994 PF07195 Flagellar hook-associated protein 2 C-terminus XBJ1_1994 PF02465 Flagellar hook-associated protein 2 N-terminus XBJ1_1994 PF07196 Flagellin hook IN motif XBJ1_1995 PF00700 Bacterial flagellin C-terminal helical region XBJ1_1995 PF00669 Bacterial flagellin N-terminal helical region XBJ1_1996 PF04545 Sigma-70, region 4 XBJ1_1996 PF04542 Sigma-70 region 2 XBJ1_1996 PF04539 Sigma-70 region 3 XBJ1_1997 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_1998 PF00171 Aldehyde dehydrogenase family XBJ1_1998 PF01619 Proline dehydrogenase XBJ1_1998 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XBJ1_1998 PF14850 DNA-binding domain of Proline dehydrogenase XBJ1_1999 PF00474 Sodium:solute symporter family XBJ1_2017 PF13358 DDE superfamily endonuclease XBJ1_2029 PF06530 Phage antitermination protein Q XBJ1_2036 PF03245 Bacteriophage Rz lysis protein XBJ1_2045 PF00574 Clp protease XBJ1_2060 PF02371 Transposase IS116/IS110/IS902 family XBJ1_2060 PF01548 Transposase XBJ1_2066 PF07484 Phage Tail Collar Domain XBJ1_2067 PF01769 Divalent cation transporter XBJ1_2067 PF03448 MgtE intracellular N domain XBJ1_2067 PF00571 CBS domain XBJ1_2068 PF02541 Ppx/GppA phosphatase family XBJ1_2069 PF17941 Polyphosphate kinase C-terminal domain 1 XBJ1_2069 PF13089 Polyphosphate kinase N-terminal domain XBJ1_2069 PF02503 Polyphosphate kinase middle domain XBJ1_2069 PF13090 Polyphosphate kinase C-terminal domain 2 XBJ1_2070 PF13302 Acetyltransferase (GNAT) domain XBJ1_2072 PF00551 Formyl transferase XBJ1_2073 PF02769 AIR synthase related protein, C-terminal domain XBJ1_2073 PF00586 AIR synthase related protein, N-terminal domain XBJ1_2079 PF06147 Protein of unknown function (DUF968) XBJ1_2083 PF03400 IS1 transposase XBJ1_2084 PF03811 InsA N-terminal domain XBJ1_2084 PF12759 InsA C-terminal domain XBJ1_2090 PF03400 IS1 transposase XBJ1_2091 PF03811 InsA N-terminal domain XBJ1_2091 PF12759 InsA C-terminal domain XBJ1_2094 PF13610 DDE domain XBJ1_2096 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_2096 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_2096 PF17871 AAA lid domain XBJ1_2096 PF07724 AAA domain (Cdc48 subfamily) XBJ1_2106 PF00691 OmpA family XBJ1_2106 PF13677 Membrane MotB of proton-channel complex MotA/MotB XBJ1_2114 PF16671 Actin cross-linking domain XBJ1_2114 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_2119 PF00975 Thioesterase domain XBJ1_2120 PF00854 POT family XBJ1_2121 PF07690 Major Facilitator Superfamily XBJ1_2122 PF05231 MASE1 XBJ1_2122 PF07730 Histidine kinase XBJ1_2122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_2123 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XBJ1_2123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_2123 PF07730 Histidine kinase XBJ1_2123 PF00672 HAMP domain XBJ1_2125 PF02322 Cytochrome bd terminal oxidase subunit II XBJ1_2126 PF01654 Cytochrome bd terminal oxidase subunit I XBJ1_2127 PF00392 Bacterial regulatory proteins, gntR family XBJ1_2127 PF00155 Aminotransferase class I and II XBJ1_2131 PF03811 InsA N-terminal domain XBJ1_2131 PF12759 InsA C-terminal domain XBJ1_2132 PF03400 IS1 transposase XBJ1_2134 PF12697 Alpha/beta hydrolase family XBJ1_2140 PF00152 tRNA synthetases class II (D, K and N) XBJ1_2145 PF13358 DDE superfamily endonuclease XBJ1_2146 PF12697 Alpha/beta hydrolase family XBJ1_2149 PF02369 Bacterial Ig-like domain (group 1) XBJ1_2149 PF09134 Invasin, domain 3 XBJ1_2149 PF11924 Inverse autotransporter, beta-domain XBJ1_2151 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2151 PF00550 Phosphopantetheine attachment site XBJ1_2151 PF00668 Condensation domain XBJ1_2151 PF00501 AMP-binding enzyme XBJ1_2152 PF00550 Phosphopantetheine attachment site XBJ1_2152 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2152 PF00501 AMP-binding enzyme XBJ1_2152 PF00668 Condensation domain XBJ1_2152 PF00975 Thioesterase domain XBJ1_2153 PF00668 Condensation domain XBJ1_2153 PF00550 Phosphopantetheine attachment site XBJ1_2153 PF00501 AMP-binding enzyme XBJ1_2153 PF00975 Thioesterase domain XBJ1_2153 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2154 PF00664 ABC transporter transmembrane region XBJ1_2154 PF00005 ABC transporter XBJ1_2155 PF02525 Flavodoxin-like fold XBJ1_2156 PF12833 Helix-turn-helix domain XBJ1_2156 PF06719 AraC-type transcriptional regulator N-terminus XBJ1_2159 PF00152 tRNA synthetases class II (D, K and N) XBJ1_2159 PF01336 OB-fold nucleic acid binding domain XBJ1_2160 PF13649 Methyltransferase domain XBJ1_2161 PF17676 LD-carboxypeptidase C-terminal domain XBJ1_2161 PF02016 LD-carboxypeptidase N-terminal domain XBJ1_2162 PF01048 Phosphorylase superfamily XBJ1_2164 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_2165 PF00133 tRNA synthetases class I (I, L, M and V) XBJ1_2165 PF08264 Anticodon-binding domain of tRNA XBJ1_2165 PF09334 tRNA synthetases class I (M) XBJ1_2165 PF13603 Leucyl-tRNA synthetase, Domain 2 XBJ1_2166 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XBJ1_2166 PF04073 Aminoacyl-tRNA editing domain XBJ1_2166 PF03129 Anticodon binding domain XBJ1_2171 PF03400 IS1 transposase XBJ1_2172 PF03811 InsA N-terminal domain XBJ1_2172 PF12759 InsA C-terminal domain XBJ1_2176 PF00248 Aldo/keto reductase family XBJ1_2179 PF00005 ABC transporter XBJ1_2187 PF03358 NADPH-dependent FMN reductase XBJ1_2189 PF12759 InsA C-terminal domain XBJ1_2189 PF03811 InsA N-terminal domain XBJ1_2190 PF03400 IS1 transposase XBJ1_2194 PF01926 50S ribosome-binding GTPase XBJ1_2194 PF06071 Protein of unknown function (DUF933) XBJ1_2195 PF01195 Peptidyl-tRNA hydrolase XBJ1_2196 PF10762 Protein of unknown function (DUF2583) XBJ1_2197 PF00657 GDSL-like Lipase/Acylhydrolase XBJ1_2197 PF03797 Autotransporter beta-domain XBJ1_2198 PF14572 Phosphoribosyl synthetase-associated domain XBJ1_2198 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XBJ1_2199 PF00288 GHMP kinases N terminal domain XBJ1_2199 PF08544 GHMP kinases C terminal XBJ1_2200 PF03550 Outer membrane lipoprotein LolB XBJ1_2201 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XBJ1_2201 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XBJ1_2201 PF01488 Shikimate / quinate 5-dehydrogenase XBJ1_2202 PF03462 PCRF domain XBJ1_2202 PF00472 RF-1 domain XBJ1_2203 PF13847 Methyltransferase domain XBJ1_2203 PF17827 PrmC N-terminal domain XBJ1_2204 PF13369 Transglutaminase-like superfamily XBJ1_2205 PF00793 DAHP synthetase I family XBJ1_2206 PF01740 STAS domain XBJ1_2206 PF00916 Sulfate permease family XBJ1_2208 PF00782 Dual specificity phosphatase, catalytic domain XBJ1_2209 PF12146 Serine aminopeptidase, S33 XBJ1_2209 PF12147 Putative methyltransferase XBJ1_2210 PF01066 CDP-alcohol phosphatidyltransferase XBJ1_2211 PF13280 WYL domain XBJ1_2211 PF08279 HTH domain XBJ1_2212 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_2213 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XBJ1_2214 PF02613 Nitrate reductase delta subunit XBJ1_2215 PF07273 Protein of unknown function (DUF1439) XBJ1_2216 PF07690 Major Facilitator Superfamily XBJ1_2218 PF13302 Acetyltransferase (GNAT) domain XBJ1_2219 PF03023 Lipid II flippase MurJ XBJ1_2220 PF02371 Transposase IS116/IS110/IS902 family XBJ1_2220 PF01548 Transposase XBJ1_2222 PF00750 tRNA synthetases class I (R) XBJ1_2222 PF03485 Arginyl tRNA synthetase N terminal domain XBJ1_2222 PF05746 DALR anticodon binding domain XBJ1_2223 PF06185 YecM protein XBJ1_2224 PF00849 RNA pseudouridylate synthase XBJ1_2224 PF01479 S4 domain XBJ1_2226 PF00950 ABC 3 transport family XBJ1_2227 PF00005 ABC transporter XBJ1_2228 PF01297 Zinc-uptake complex component A periplasmic XBJ1_2229 PF01476 LysM domain XBJ1_2229 PF08525 Opacity-associated protein A N-terminal motif XBJ1_2229 PF01551 Peptidase family M23 XBJ1_2230 PF03279 Bacterial lipid A biosynthesis acyltransferase XBJ1_2231 PF00224 Pyruvate kinase, barrel domain XBJ1_2231 PF02887 Pyruvate kinase, alpha/beta domain XBJ1_2232 PF01380 SIS domain XBJ1_2232 PF01418 Helix-turn-helix domain, rpiR family XBJ1_2233 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XBJ1_2233 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XBJ1_2234 PF00893 Small Multidrug Resistance protein XBJ1_2235 PF00893 Small Multidrug Resistance protein XBJ1_2236 PF01042 Endoribonuclease L-PSP XBJ1_2237 PF13307 Helicase C-terminal domain XBJ1_2237 PF04851 Type III restriction enzyme, res subunit XBJ1_2238 PF00814 Glycoprotease family XBJ1_2239 PF03843 Outer membrane lipoprotein Slp family XBJ1_2242 PF00501 AMP-binding enzyme XBJ1_2242 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2247 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XBJ1_2247 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XBJ1_2247 PF01276 Orn/Lys/Arg decarboxylase, major domain XBJ1_2248 PF13520 Amino acid permease XBJ1_2249 PF04227 Indigoidine synthase A like protein XBJ1_2250 PF04227 Indigoidine synthase A like protein XBJ1_2252 PF01773 Na+ dependent nucleoside transporter N-terminus XBJ1_2252 PF07662 Na+ dependent nucleoside transporter C-terminus XBJ1_2253 PF00582 Universal stress protein family XBJ1_2254 PF00582 Universal stress protein family XBJ1_2256 PF04231 Endonuclease I XBJ1_2257 PF03932 CutC family XBJ1_2259 PF08003 Protein of unknown function (DUF1698) XBJ1_2260 PF13649 Methyltransferase domain XBJ1_2261 PF01124 MAPEG family XBJ1_2262 PF00152 tRNA synthetases class II (D, K and N) XBJ1_2262 PF01336 OB-fold nucleic acid binding domain XBJ1_2262 PF02938 GAD domain XBJ1_2263 PF00293 NUDIX domain XBJ1_2264 PF01709 Transcriptional regulator XBJ1_2265 PF02075 Crossover junction endodeoxyribonuclease RuvC XBJ1_2266 PF01330 RuvA N terminal domain XBJ1_2266 PF07499 RuvA, C-terminal domain XBJ1_2267 PF05496 Holliday junction DNA helicase RuvB P-loop domain XBJ1_2267 PF05491 RuvB C-terminal winged helix domain XBJ1_2267 PF17864 RuvB AAA lid domain XBJ1_2270 PF03922 OmpW family XBJ1_2271 PF01244 Membrane dipeptidase (Peptidase family M19) XBJ1_2272 PF04972 BON domain XBJ1_2274 PF00290 Tryptophan synthase alpha chain XBJ1_2275 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_2276 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XBJ1_2276 PF00218 Indole-3-glycerol phosphate synthase XBJ1_2277 PF00591 Glycosyl transferase family, a/b domain XBJ1_2277 PF02885 Glycosyl transferase family, helical bundle domain XBJ1_2278 PF00117 Glutamine amidotransferase class-I XBJ1_2279 PF04715 Anthranilate synthase component I, N terminal region XBJ1_2279 PF00425 chorismate binding enzyme XBJ1_2280 PF02811 PHP domain XBJ1_2281 PF01300 Telomere recombination XBJ1_2282 PF01479 S4 domain XBJ1_2282 PF00849 RNA pseudouridylate synthase XBJ1_2283 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XBJ1_2283 PF12557 Cob(I)alamin adenosyltransferase N terminal XBJ1_2284 PF00106 short chain dehydrogenase XBJ1_2285 PF08496 Peptidase family S49 N-terminal XBJ1_2285 PF01343 Peptidase family S49 XBJ1_2286 PF10692 Protein of unknown function (DUF2498) XBJ1_2289 PF08272 Topoisomerase I zinc-ribbon-like XBJ1_2289 PF01396 Topoisomerase DNA binding C4 zinc finger XBJ1_2289 PF01751 Toprim domain XBJ1_2289 PF01131 DNA topoisomerase XBJ1_2290 PF03466 LysR substrate binding domain XBJ1_2290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2292 PF00330 Aconitase family (aconitate hydratase) XBJ1_2292 PF00694 Aconitase C-terminal domain XBJ1_2295 PF01797 Transposase IS200 like XBJ1_2296 PF00925 GTP cyclohydrolase II XBJ1_2297 PF06305 Lipopolysaccharide assembly protein A domain XBJ1_2298 PF18073 Rubredoxin metal binding domain XBJ1_2299 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XBJ1_2300 PF01253 Translation initiation factor SUI1 XBJ1_2302 PF00773 RNB domain XBJ1_2302 PF17876 Cold shock domain XBJ1_2302 PF08206 Ribonuclease B OB domain XBJ1_2302 PF00575 S1 RNA binding domain XBJ1_2303 PF10576 Iron-sulfur binding domain of endonuclease III XBJ1_2303 PF00730 HhH-GPD superfamily base excision DNA repair protein XBJ1_2303 PF00633 Helix-hairpin-helix motif XBJ1_2304 PF02508 Rnf-Nqr subunit, membrane protein XBJ1_2305 PF04205 FMN-binding domain XBJ1_2306 PF03116 NQR2, RnfD, RnfE family XBJ1_2307 PF10531 SLBB domain XBJ1_2307 PF13375 RnfC Barrel sandwich hybrid domain XBJ1_2307 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XBJ1_2307 PF13237 4Fe-4S dicluster domain XBJ1_2308 PF04060 Putative Fe-S cluster XBJ1_2309 PF02508 Rnf-Nqr subunit, membrane protein XBJ1_2310 PF10754 Protein of unknown function (DUF2569) XBJ1_2311 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XBJ1_2311 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XBJ1_2312 PF13593 SBF-like CPA transporter family (DUF4137) XBJ1_2313 PF00962 Adenosine/AMP deaminase XBJ1_2314 PF06097 Bacterial protein of unknown function (DUF945) XBJ1_2315 PF01238 Phosphomannose isomerase type I XBJ1_2316 PF10415 Fumarase C C-terminus XBJ1_2316 PF00206 Lyase XBJ1_2317 PF05472 DNA replication terminus site-binding protein (Ter protein) XBJ1_2319 PF07690 Major Facilitator Superfamily XBJ1_2320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2320 PF03466 LysR substrate binding domain XBJ1_2321 PF00480 ROK family XBJ1_2325 PF06932 Protein of unknown function (DUF1283) XBJ1_2327 PF00106 short chain dehydrogenase XBJ1_2330 PF03466 LysR substrate binding domain XBJ1_2330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2338 PF07715 TonB-dependent Receptor Plug Domain XBJ1_2338 PF00593 TonB dependent receptor XBJ1_2339 PF01047 MarR family XBJ1_2340 PF00892 EamA-like transporter family XBJ1_2342 PF13649 Methyltransferase domain XBJ1_2343 PF03797 Autotransporter beta-domain XBJ1_2343 PF12951 Passenger-associated-transport-repeat XBJ1_2343 PF00082 Subtilase family XBJ1_2347 PF07690 Major Facilitator Superfamily XBJ1_2350 PF13358 DDE superfamily endonuclease XBJ1_2353 PF00325 Bacterial regulatory proteins, crp family XBJ1_2353 PF00027 Cyclic nucleotide-binding domain XBJ1_2354 PF00582 Universal stress protein family XBJ1_2355 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_2355 PF00589 Phage integrase family XBJ1_2356 PF02233 NAD(P) transhydrogenase beta subunit XBJ1_2357 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XBJ1_2357 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XBJ1_2357 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XBJ1_2358 PF07338 Protein of unknown function (DUF1471) XBJ1_2360 PF13520 Amino acid permease XBJ1_2363 PF00419 Fimbrial protein XBJ1_2364 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XBJ1_2364 PF02753 Pili assembly chaperone PapD, C-terminal domain XBJ1_2365 PF13953 PapC C-terminal domain XBJ1_2365 PF13954 PapC N-terminal domain XBJ1_2365 PF00577 Outer membrane usher protein XBJ1_2367 PF00550 Phosphopantetheine attachment site XBJ1_2367 PF00668 Condensation domain XBJ1_2367 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2367 PF00501 AMP-binding enzyme XBJ1_2368 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XBJ1_2368 PF00271 Helicase conserved C-terminal domain XBJ1_2368 PF04408 Helicase associated domain (HA2) XBJ1_2368 PF11898 Domain of unknown function (DUF3418) XBJ1_2368 PF00270 DEAD/DEAH box helicase XBJ1_2369 PF02525 Flavodoxin-like fold XBJ1_2370 PF07027 Protein of unknown function (DUF1318) XBJ1_2371 PF13617 YnbE-like lipoprotein XBJ1_2372 PF11739 Dicarboxylate transport XBJ1_2373 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XBJ1_2373 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XBJ1_2378 PF03692 Putative zinc- or iron-chelating domain XBJ1_2379 PF01557 Fumarylacetoacetate (FAA) hydrolase family XBJ1_2380 PF13406 Transglycosylase SLT domain XBJ1_2382 PF05166 YcgL domain XBJ1_2383 PF05209 Septum formation inhibitor MinC, N-terminal domain XBJ1_2383 PF03775 Septum formation inhibitor MinC, C-terminal domain XBJ1_2384 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XBJ1_2385 PF03776 Septum formation topological specificity factor MinE XBJ1_2386 PF13358 DDE superfamily endonuclease XBJ1_2387 PF13610 DDE domain XBJ1_2390 PF03811 InsA N-terminal domain XBJ1_2390 PF12759 InsA C-terminal domain XBJ1_2391 PF03400 IS1 transposase XBJ1_2392 PF07690 Major Facilitator Superfamily XBJ1_2393 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XBJ1_2393 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XBJ1_2398 PF01612 3'-5' exonuclease XBJ1_2398 PF00570 HRDC domain XBJ1_2400 PF01464 Transglycosylase SLT domain XBJ1_2402 PF01297 Zinc-uptake complex component A periplasmic XBJ1_2403 PF00005 ABC transporter XBJ1_2404 PF00950 ABC 3 transport family XBJ1_2405 PF00950 ABC 3 transport family XBJ1_2410 PF11647 Membrane Localization Domain XBJ1_2410 PF12146 Serine aminopeptidase, S33 XBJ1_2410 PF07634 RtxA repeat XBJ1_2410 PF16671 Actin cross-linking domain XBJ1_2410 PF11713 Peptidase C80 family XBJ1_2411 PF01740 STAS domain XBJ1_2411 PF00916 Sulfate permease family XBJ1_2412 PF04279 Intracellular septation protein A XBJ1_2413 PF03061 Thioesterase superfamily XBJ1_2414 PF03544 Gram-negative bacterial TonB protein C-terminal XBJ1_2417 PF13396 Phospholipase_D-nuclease N-terminal XBJ1_2417 PF13091 PLD-like domain XBJ1_2418 PF04269 Protein of unknown function, DUF440 XBJ1_2419 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XBJ1_2419 PF00005 ABC transporter XBJ1_2420 PF00005 ABC transporter XBJ1_2420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XBJ1_2421 PF12911 N-terminal TM domain of oligopeptide transport permease C XBJ1_2421 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_2422 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_2423 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_2424 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_2430 PF00171 Aldehyde dehydrogenase family XBJ1_2430 PF00465 Iron-containing alcohol dehydrogenase XBJ1_2431 PF00265 Thymidine kinase XBJ1_2432 PF00816 H-NS histone family XBJ1_2433 PF01370 NAD dependent epimerase/dehydratase family XBJ1_2434 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XBJ1_2434 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XBJ1_2434 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XBJ1_2435 PF00483 Nucleotidyl transferase XBJ1_2436 PF00072 Response regulator receiver domain XBJ1_2437 PF02810 SEC-C motif XBJ1_2438 PF00551 Formyl transferase XBJ1_2438 PF01842 ACT domain XBJ1_2442 PF03372 Endonuclease/Exonuclease/phosphatase family XBJ1_2443 PF01131 DNA topoisomerase XBJ1_2443 PF01751 Toprim domain XBJ1_2444 PF02769 AIR synthase related protein, C-terminal domain XBJ1_2444 PF00586 AIR synthase related protein, N-terminal domain XBJ1_2445 PF02769 AIR synthase related protein, C-terminal domain XBJ1_2445 PF00586 AIR synthase related protein, N-terminal domain XBJ1_2446 PF00881 Nitroreductase family XBJ1_2447 PF01343 Peptidase family S49 XBJ1_2448 PF17763 Glutaminase/Asparaginase C-terminal domain XBJ1_2448 PF00710 Asparaginase, N-terminal XBJ1_2449 PF00857 Isochorismatase family XBJ1_2450 PF07023 Protein of unknown function (DUF1315) XBJ1_2451 PF01641 SelR domain XBJ1_2452 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XBJ1_2452 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XBJ1_2453 PF01263 Aldose 1-epimerase XBJ1_2454 PF06629 MltA-interacting protein MipA XBJ1_2455 PF00842 Alanine racemase, C-terminal domain XBJ1_2455 PF01168 Alanine racemase, N-terminal domain XBJ1_2456 PF01266 FAD dependent oxidoreductase XBJ1_2457 PF00392 Bacterial regulatory proteins, gntR family XBJ1_2457 PF07840 FadR C-terminal domain XBJ1_2458 PF06450 Bacterial Na+/H+ antiporter B (NhaB) XBJ1_2460 PF02600 Disulfide bond formation protein DsbB XBJ1_2463 PF01171 PP-loop family XBJ1_2464 PF01544 CorA-like Mg2+ transporter protein XBJ1_2465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_2467 PF08534 Redoxin XBJ1_2469 PF00158 Sigma-54 interaction domain XBJ1_2469 PF18024 Helix-turn-helix domain XBJ1_2470 PF05128 Domain of unknown function (DUF697) XBJ1_2471 PF04317 YcjX-like family, DUF463 XBJ1_2472 PF04024 PspC domain XBJ1_2473 PF06667 Phage shock protein B XBJ1_2474 PF04012 PspA/IM30 family XBJ1_2475 PF02954 Bacterial regulatory protein, Fis family XBJ1_2475 PF00158 Sigma-54 interaction domain XBJ1_2476 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XBJ1_2477 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_2478 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_2478 PF12911 N-terminal TM domain of oligopeptide transport permease C XBJ1_2479 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XBJ1_2479 PF00005 ABC transporter XBJ1_2480 PF00005 ABC transporter XBJ1_2482 PF00043 Glutathione S-transferase, C-terminal domain XBJ1_2482 PF02798 Glutathione S-transferase, N-terminal domain XBJ1_2484 PF08543 Phosphomethylpyrimidine kinase XBJ1_2486 PF00579 tRNA synthetases class I (W and Y) XBJ1_2486 PF01479 S4 domain XBJ1_2487 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XBJ1_2487 PF01243 Pyridoxamine 5'-phosphate oxidase XBJ1_2488 PF03702 Anhydro-N-acetylmuramic acid kinase XBJ1_2489 PF05433 Glycine zipper 2TM domain XBJ1_2490 PF01047 MarR family XBJ1_2491 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_2492 PF00929 Exonuclease XBJ1_2493 PF00462 Glutaredoxin XBJ1_2494 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XBJ1_2494 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XBJ1_2496 PF00356 Bacterial regulatory proteins, lacI family XBJ1_2497 PF03466 LysR substrate binding domain XBJ1_2497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2498 PF07690 Major Facilitator Superfamily XBJ1_2501 PF00677 Lumazine binding domain XBJ1_2502 PF01554 MatE XBJ1_2503 PF00224 Pyruvate kinase, barrel domain XBJ1_2503 PF02887 Pyruvate kinase, alpha/beta domain XBJ1_2504 PF04728 Lipoprotein leucine-zipper XBJ1_2506 PF01476 LysM domain XBJ1_2506 PF03734 L,D-transpeptidase catalytic domain XBJ1_2506 PF17969 L,D-transpeptidase C-terminal domain XBJ1_2507 PF03061 Thioesterase superfamily XBJ1_2508 PF01565 FAD binding domain XBJ1_2508 PF13183 4Fe-4S dicluster domain XBJ1_2508 PF02913 FAD linked oxidases, C-terminal domain XBJ1_2509 PF01594 AI-2E family transporter XBJ1_2510 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XBJ1_2510 PF02896 PEP-utilising enzyme, TIM barrel domain XBJ1_2510 PF00391 PEP-utilising enzyme, mobile domain XBJ1_2511 PF03618 Kinase/pyrophosphorylase XBJ1_2512 PF00793 DAHP synthetase I family XBJ1_2513 PF00593 TonB dependent receptor XBJ1_2513 PF07715 TonB-dependent Receptor Plug Domain XBJ1_2514 PF05171 Haemin-degrading HemS.ChuX domain XBJ1_2515 PF01497 Periplasmic binding protein XBJ1_2516 PF01032 FecCD transport family XBJ1_2517 PF00005 ABC transporter XBJ1_2521 PF12833 Helix-turn-helix domain XBJ1_2522 PF10437 Bacterial lipoate protein ligase C-terminus XBJ1_2522 PF03099 Biotin/lipoate A/B protein ligase family XBJ1_2523 PF00877 NlpC/P60 family XBJ1_2530 PF00892 EamA-like transporter family XBJ1_2532 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XBJ1_2533 PF01522 Polysaccharide deacetylase XBJ1_2534 PF01370 NAD dependent epimerase/dehydratase family XBJ1_2534 PF00551 Formyl transferase XBJ1_2534 PF02911 Formyl transferase, C-terminal domain XBJ1_2535 PF00535 Glycosyl transferase family 2 XBJ1_2536 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XBJ1_2537 PF00005 ABC transporter XBJ1_2538 PF01032 FecCD transport family XBJ1_2539 PF00216 Bacterial DNA-binding protein XBJ1_2540 PF03147 Ferredoxin-fold anticodon binding domain XBJ1_2540 PF03483 B3/4 domain XBJ1_2540 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XBJ1_2540 PF03484 tRNA synthetase B5 domain XBJ1_2540 PF01588 Putative tRNA binding domain XBJ1_2541 PF01409 tRNA synthetases class II core domain (F) XBJ1_2541 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XBJ1_2542 PF00453 Ribosomal protein L20 XBJ1_2543 PF01632 Ribosomal protein L35 XBJ1_2544 PF00707 Translation initiation factor IF-3, C-terminal domain XBJ1_2544 PF05198 Translation initiation factor IF-3, N-terminal domain XBJ1_2545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XBJ1_2545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XBJ1_2545 PF02824 TGS domain XBJ1_2545 PF03129 Anticodon binding domain XBJ1_2547 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_2548 PF04307 LexA-binding, inner membrane-associated putative hydrolase XBJ1_2550 PF01435 Peptidase family M48 XBJ1_2551 PF11818 C-terminal domain of tail specific protease (DUF3340) XBJ1_2551 PF17804 Tail specific protease N-terminal domain XBJ1_2551 PF00595 PDZ domain XBJ1_2551 PF03572 Peptidase family S41 XBJ1_2552 PF04352 ProQ/FINO family XBJ1_2552 PF17516 ProQ C-terminal domain XBJ1_2553 PF13185 GAF domain XBJ1_2554 PF10709 Protein of unknown function (DUF2511) XBJ1_2555 PF05425 Copper resistance protein D XBJ1_2556 PF04234 CopC domain XBJ1_2557 PF00210 Ferritin-like domain XBJ1_2558 PF06440 DNA polymerase III, theta subunit XBJ1_2559 PF00561 alpha/beta hydrolase fold XBJ1_2560 PF13995 YebF-like protein XBJ1_2561 PF03701 Uncharacterised protein family (UPF0181) XBJ1_2562 PF00425 chorismate binding enzyme XBJ1_2562 PF04715 Anthranilate synthase component I, N terminal region XBJ1_2563 PF00293 NUDIX domain XBJ1_2564 PF03315 Serine dehydratase beta chain XBJ1_2564 PF03313 Serine dehydratase alpha chain XBJ1_2565 PF03830 PTS system sorbose subfamily IIB component XBJ1_2565 PF03610 PTS system fructose IIA component XBJ1_2566 PF03609 PTS system sorbose-specific iic component XBJ1_2567 PF03613 PTS system mannose/fructose/sorbose family IID component XBJ1_2568 PF06173 Protein of unknown function (DUF986) XBJ1_2569 PF02659 Putative manganese efflux pump XBJ1_2570 PF13847 Methyltransferase domain XBJ1_2573 PF03811 InsA N-terminal domain XBJ1_2573 PF12759 InsA C-terminal domain XBJ1_2574 PF03400 IS1 transposase XBJ1_2575 PF12951 Passenger-associated-transport-repeat XBJ1_2575 PF12951 Passenger-associated-transport-repeat XBJ1_2579 PF13358 DDE superfamily endonuclease XBJ1_2580 PF01609 Transposase DDE domain XBJ1_2580 PF13808 DDE_Tnp_1-associated XBJ1_2583 PF02540 NAD synthase XBJ1_2583 PF00958 GMP synthase C terminal domain XBJ1_2583 PF00117 Glutamine amidotransferase class-I XBJ1_2584 PF00478 IMP dehydrogenase / GMP reductase domain XBJ1_2584 PF00571 CBS domain XBJ1_2585 PF02601 Exonuclease VII, large subunit XBJ1_2585 PF13742 OB-fold nucleic acid binding domain XBJ1_2586 PF00593 TonB dependent receptor XBJ1_2586 PF07715 TonB-dependent Receptor Plug Domain XBJ1_2587 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XBJ1_2587 PF00326 Prolyl oligopeptidase family XBJ1_2590 PF01515 Phosphate acetyl/butaryl transferase XBJ1_2590 PF00390 Malic enzyme, N-terminal domain XBJ1_2590 PF03949 Malic enzyme, NAD binding domain XBJ1_2592 PF00072 Response regulator receiver domain XBJ1_2592 PF00196 Bacterial regulatory proteins, luxR family XBJ1_2594 PF03960 ArsC family XBJ1_2595 PF07687 Peptidase dimerisation domain XBJ1_2595 PF01546 Peptidase family M20/M25/M40 XBJ1_2596 PF02557 D-alanyl-D-alanine carboxypeptidase XBJ1_2597 PF13980 Uncharacterised protein family (UPF0370) XBJ1_2598 PF05127 Helicase XBJ1_2598 PF13718 GNAT acetyltransferase 2 XBJ1_2598 PF17176 tRNA-binding domain XBJ1_2598 PF08351 Domain of unknown function (DUF1726) XBJ1_2599 PF04284 Protein of unknown function (DUF441) XBJ1_2601 PF13340 Putative transposase of IS4/5 family (DUF4096) XBJ1_2602 PF03400 IS1 transposase XBJ1_2603 PF03811 InsA N-terminal domain XBJ1_2603 PF12759 InsA C-terminal domain XBJ1_2605 PF01609 Transposase DDE domain XBJ1_2605 PF13808 DDE_Tnp_1-associated XBJ1_2610 PF00425 chorismate binding enzyme XBJ1_2611 PF00501 AMP-binding enzyme XBJ1_2611 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2612 PF00550 Phosphopantetheine attachment site XBJ1_2612 PF00857 Isochorismatase family XBJ1_2614 PF07883 Cupin domain XBJ1_2615 PF13610 DDE domain XBJ1_2618 PF13610 DDE domain XBJ1_2619 PF00860 Permease family XBJ1_2620 PF13358 DDE superfamily endonuclease XBJ1_2621 PF00860 Permease family XBJ1_2622 PF13358 DDE superfamily endonuclease XBJ1_2623 PF00860 Permease family XBJ1_2624 PF00308 Bacterial dnaA protein XBJ1_2625 PF03960 ArsC family XBJ1_2626 PF07720 Tetratricopeptide repeat XBJ1_2626 PF01435 Peptidase family M48 XBJ1_2628 PF00578 AhpC/TSA family XBJ1_2629 PF01842 ACT domain XBJ1_2630 PF00701 Dihydrodipicolinate synthetase family XBJ1_2631 PF06804 NlpB/DapX lipoprotein XBJ1_2632 PF01259 SAICAR synthetase XBJ1_2637 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XBJ1_2639 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) XBJ1_2641 PF07409 Phage protein GP46 XBJ1_2642 PF06890 Bacteriophage Mu Gp45 protein XBJ1_2645 PF04717 Type VI secretion system, phage-baseplate injector XBJ1_2645 PF16671 Actin cross-linking domain XBJ1_2657 PF00005 ABC transporter XBJ1_2659 PF13356 Arm DNA-binding domain XBJ1_2659 PF00589 Phage integrase family XBJ1_2660 PF03811 InsA N-terminal domain XBJ1_2660 PF12759 InsA C-terminal domain XBJ1_2661 PF03400 IS1 transposase XBJ1_2665 PF05638 Type VI secretion system effector, Hcp XBJ1_2673 PF00589 Phage integrase family XBJ1_2673 PF13356 Arm DNA-binding domain XBJ1_2674 PF01066 CDP-alcohol phosphatidyltransferase XBJ1_2675 PF02151 UvrB/uvrC motif XBJ1_2675 PF01541 GIY-YIG catalytic domain XBJ1_2675 PF08459 UvrC Helix-hairpin-helix N-terminal XBJ1_2676 PF00196 Bacterial regulatory proteins, luxR family XBJ1_2676 PF00072 Response regulator receiver domain XBJ1_2679 PF01797 Transposase IS200 like XBJ1_2681 PF03400 IS1 transposase XBJ1_2682 PF12759 InsA C-terminal domain XBJ1_2682 PF03811 InsA N-terminal domain XBJ1_2683 PF03400 IS1 transposase XBJ1_2684 PF12759 InsA C-terminal domain XBJ1_2684 PF03811 InsA N-terminal domain XBJ1_2685 PF13610 DDE domain XBJ1_2687 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XBJ1_2687 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XBJ1_2690 PF00668 Condensation domain XBJ1_2690 PF00698 Acyl transferase domain XBJ1_2690 PF16197 Ketoacyl-synthetase C-terminal extension XBJ1_2690 PF00550 Phosphopantetheine attachment site XBJ1_2690 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2690 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2691 PF00501 AMP-binding enzyme XBJ1_2691 PF00668 Condensation domain XBJ1_2691 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2691 PF00550 Phosphopantetheine attachment site XBJ1_2692 PF00501 AMP-binding enzyme XBJ1_2692 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2692 PF00668 Condensation domain XBJ1_2692 PF00550 Phosphopantetheine attachment site XBJ1_2693 PF00005 ABC transporter XBJ1_2694 PF14765 Polyketide synthase dehydratase XBJ1_2694 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2694 PF00107 Zinc-binding dehydrogenase XBJ1_2694 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2694 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_2694 PF00698 Acyl transferase domain XBJ1_2694 PF00550 Phosphopantetheine attachment site XBJ1_2694 PF08659 KR domain XBJ1_2694 PF16197 Ketoacyl-synthetase C-terminal extension XBJ1_2695 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2695 PF00550 Phosphopantetheine attachment site XBJ1_2695 PF00501 AMP-binding enzyme XBJ1_2695 PF00668 Condensation domain XBJ1_2696 PF00698 Acyl transferase domain XBJ1_2697 PF00501 AMP-binding enzyme XBJ1_2697 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2697 PF00668 Condensation domain XBJ1_2697 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2697 PF00202 Aminotransferase class-III XBJ1_2697 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2697 PF16197 Ketoacyl-synthetase C-terminal extension XBJ1_2697 PF00550 Phosphopantetheine attachment site XBJ1_2698 PF00975 Thioesterase domain XBJ1_2698 PF00668 Condensation domain XBJ1_2698 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2698 PF00501 AMP-binding enzyme XBJ1_2698 PF00550 Phosphopantetheine attachment site XBJ1_2699 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XBJ1_2699 PF02770 Acyl-CoA dehydrogenase, middle domain XBJ1_2699 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XBJ1_2700 PF00550 Phosphopantetheine attachment site XBJ1_2703 PF02049 Flagellar hook-basal body complex protein FliE XBJ1_2704 PF08345 Flagellar M-ring protein C-terminal XBJ1_2704 PF01514 Secretory protein of YscJ/FliF family XBJ1_2705 PF14841 FliG middle domain XBJ1_2705 PF01706 FliG C-terminal domain XBJ1_2705 PF14842 FliG N-terminal domain XBJ1_2706 PF02108 Flagellar assembly protein FliH XBJ1_2707 PF18269 T3SS EscN ATPase C-terminal domain XBJ1_2707 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XBJ1_2708 PF02050 Flagellar FliJ protein XBJ1_2709 PF02120 Flagellar hook-length control protein FliK XBJ1_2711 PF03748 Flagellar basal body-associated protein FliL XBJ1_2712 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XBJ1_2712 PF02154 Flagellar motor switch protein FliM XBJ1_2713 PF16973 Flagellar motor switch protein FliN N-terminal XBJ1_2713 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XBJ1_2714 PF04347 Flagellar biosynthesis protein, FliO XBJ1_2715 PF00813 FliP family XBJ1_2716 PF01313 Bacterial export proteins, family 3 XBJ1_2717 PF01311 Bacterial export proteins, family 1 XBJ1_2726 PF11924 Inverse autotransporter, beta-domain XBJ1_2726 PF07979 Intimin C-type lectin domain XBJ1_2726 PF09134 Invasin, domain 3 XBJ1_2726 PF02369 Bacterial Ig-like domain (group 1) XBJ1_2728 PF03797 Autotransporter beta-domain XBJ1_2728 PF00657 GDSL-like Lipase/Acylhydrolase XBJ1_2730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XBJ1_2731 PF00873 AcrB/AcrD/AcrF family XBJ1_2732 PF00873 AcrB/AcrD/AcrF family XBJ1_2733 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_2733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_2733 PF00672 HAMP domain XBJ1_2734 PF00072 Response regulator receiver domain XBJ1_2734 PF00486 Transcriptional regulatory protein, C terminal XBJ1_2738 PF01791 DeoC/LacD family aldolase XBJ1_2739 PF08543 Phosphomethylpyrimidine kinase XBJ1_2741 PF00313 'Cold-shock' DNA-binding domain XBJ1_2742 PF00324 Amino acid permease XBJ1_2745 PF12833 Helix-turn-helix domain XBJ1_2746 PF01510 N-acetylmuramoyl-L-alanine amidase XBJ1_2747 PF01235 Sodium:alanine symporter family XBJ1_2751 PF00472 RF-1 domain XBJ1_2753 PF13358 DDE superfamily endonuclease XBJ1_2756 PF03222 Tryptophan/tyrosine permease family XBJ1_2767 PF13358 DDE superfamily endonuclease XBJ1_2773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2773 PF03466 LysR substrate binding domain XBJ1_2776 PF00324 Amino acid permease XBJ1_2781 PF13592 Winged helix-turn helix XBJ1_2781 PF13358 DDE superfamily endonuclease XBJ1_2786 PF00665 Integrase core domain XBJ1_2786 PF13333 Integrase core domain XBJ1_2789 PF01609 Transposase DDE domain XBJ1_2798 PF03245 Bacteriophage Rz lysis protein XBJ1_2801 PF13358 DDE superfamily endonuclease XBJ1_2804 PF01817 Chorismate mutase type II XBJ1_2805 PF13340 Putative transposase of IS4/5 family (DUF4096) XBJ1_2810 PF03245 Bacteriophage Rz lysis protein XBJ1_2814 PF07828 PA-IL-like protein XBJ1_2816 PF07484 Phage Tail Collar Domain XBJ1_2816 PF03335 Phage tail fibre repeat XBJ1_2816 PF08400 Prophage tail fibre N-terminal XBJ1_2817 PF03811 InsA N-terminal domain XBJ1_2817 PF12759 InsA C-terminal domain XBJ1_2820 PF03400 IS1 transposase XBJ1_2821 PF03811 InsA N-terminal domain XBJ1_2821 PF12759 InsA C-terminal domain XBJ1_2822 PF00180 Isocitrate/isopropylmalate dehydrogenase XBJ1_2823 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain XBJ1_2823 PF00589 Phage integrase family XBJ1_2827 PF00589 Phage integrase family XBJ1_2827 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain XBJ1_2828 PF00180 Isocitrate/isopropylmalate dehydrogenase XBJ1_2829 PF00849 RNA pseudouridylate synthase XBJ1_2830 PF00293 NUDIX domain XBJ1_2832 PF04356 Protein of unknown function (DUF489) XBJ1_2833 PF00206 Lyase XBJ1_2833 PF08328 Adenylosuccinate lyase C-terminal XBJ1_2835 PF00072 Response regulator receiver domain XBJ1_2835 PF00486 Transcriptional regulatory protein, C terminal XBJ1_2836 PF08918 PhoQ Sensor XBJ1_2836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_2837 PF08007 Cupin superfamily protein XBJ1_2838 PF02146 Sir2 family XBJ1_2839 PF02687 FtsX-like permease family XBJ1_2839 PF12704 MacB-like periplasmic core domain XBJ1_2840 PF00005 ABC transporter XBJ1_2841 PF12704 MacB-like periplasmic core domain XBJ1_2841 PF02687 FtsX-like permease family XBJ1_2843 PF02559 CarD-like/TRCF domain XBJ1_2843 PF17757 UvrB interaction domain XBJ1_2843 PF00270 DEAD/DEAH box helicase XBJ1_2843 PF03461 TRCF domain XBJ1_2843 PF00271 Helicase conserved C-terminal domain XBJ1_2845 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_2846 PF00933 Glycosyl hydrolase family 3 N terminal domain XBJ1_2847 PF01636 Phosphotransferase enzyme family XBJ1_2848 PF13036 Peptidoglycan-synthase activator LpoB XBJ1_2849 PF01230 HIT domain XBJ1_2850 PF01026 TatD related DNase XBJ1_2851 PF09115 DNA polymerase III, delta subunit, C terminal XBJ1_2852 PF02223 Thymidylate kinase XBJ1_2853 PF02618 YceG-like family XBJ1_2854 PF01063 Amino-transferase class IV XBJ1_2855 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2855 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2857 PF00550 Phosphopantetheine attachment site XBJ1_2860 PF00698 Acyl transferase domain XBJ1_2861 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XBJ1_2861 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XBJ1_2862 PF02504 Fatty acid synthesis protein XBJ1_2863 PF01783 Ribosomal L32p protein family XBJ1_2864 PF02620 Large ribosomal RNA subunit accumulation protein YceD XBJ1_2865 PF02545 Maf-like protein XBJ1_2866 PF00849 RNA pseudouridylate synthase XBJ1_2866 PF01479 S4 domain XBJ1_2867 PF10150 Ribonuclease E/G family XBJ1_2867 PF00575 S1 RNA binding domain XBJ1_2867 PF12111 Polyribonucleotide phosphorylase C terminal XBJ1_2869 PF04363 Protein of unknown function (DUF496) XBJ1_2870 PF08411 Exonuclease C-terminal XBJ1_2870 PF00929 Exonuclease XBJ1_2871 PF01565 FAD binding domain XBJ1_2871 PF09330 D-lactate dehydrogenase, membrane binding XBJ1_2872 PF13520 Amino acid permease XBJ1_2875 PF00593 TonB dependent receptor XBJ1_2875 PF07715 TonB-dependent Receptor Plug Domain XBJ1_2876 PF00005 ABC transporter XBJ1_2877 PF01032 FecCD transport family XBJ1_2879 PF00324 Amino acid permease XBJ1_2880 PF03466 LysR substrate binding domain XBJ1_2880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2881 PF03601 Conserved hypothetical protein 698 XBJ1_2883 PF01261 Xylose isomerase-like TIM barrel XBJ1_2884 PF00294 pfkB family carbohydrate kinase XBJ1_2886 PF00293 NUDIX domain XBJ1_2887 PF03222 Tryptophan/tyrosine permease family XBJ1_2888 PF09285 Elongation factor P, C-terminal XBJ1_2888 PF08207 Elongation factor P (EF-P) KOW-like domain XBJ1_2888 PF01132 Elongation factor P (EF-P) OB domain XBJ1_2892 PF01569 PAP2 superfamily XBJ1_2893 PF00877 NlpC/P60 family XBJ1_2894 PF13989 YejG-like protein XBJ1_2895 PF07690 Major Facilitator Superfamily XBJ1_2896 PF00849 RNA pseudouridylate synthase XBJ1_2896 PF01479 S4 domain XBJ1_2897 PF04851 Type III restriction enzyme, res subunit XBJ1_2897 PF00271 Helicase conserved C-terminal domain XBJ1_2898 PF01386 Ribosomal L25p family XBJ1_2899 PF04245 37-kD nucleoid-associated bacterial protein XBJ1_2900 PF07208 Protein of unknown function (DUF1414) XBJ1_2901 PF11893 Domain of unknown function (DUF3413) XBJ1_2901 PF00884 Sulfatase XBJ1_2910 PF01609 Transposase DDE domain XBJ1_2910 PF13808 DDE_Tnp_1-associated XBJ1_2911 PF13610 DDE domain XBJ1_2912 PF00361 Proton-conducting membrane transporter XBJ1_2913 PF00361 Proton-conducting membrane transporter XBJ1_2914 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XBJ1_2914 PF00361 Proton-conducting membrane transporter XBJ1_2915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XBJ1_2916 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XBJ1_2917 PF12838 4Fe-4S dicluster domain XBJ1_2918 PF00146 NADH dehydrogenase XBJ1_2919 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XBJ1_2919 PF00384 Molybdopterin oxidoreductase XBJ1_2919 PF01568 Molydopterin dinucleotide binding domain XBJ1_2919 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XBJ1_2920 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XBJ1_2920 PF10531 SLBB domain XBJ1_2920 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XBJ1_2922 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XBJ1_2922 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XBJ1_2923 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XBJ1_2924 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XBJ1_2926 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_2926 PF03466 LysR substrate binding domain XBJ1_2928 PF00155 Aminotransferase class I and II XBJ1_2931 PF03600 Citrate transporter XBJ1_2931 PF02080 TrkA-C domain XBJ1_2932 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_2933 PF04217 Protein of unknown function, DUF412 XBJ1_2934 PF00871 Acetokinase family XBJ1_2935 PF01515 Phosphate acetyl/butaryl transferase XBJ1_2935 PF07085 DRTGG domain XBJ1_2937 PF00324 Amino acid permease XBJ1_2938 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family XBJ1_2939 PF04996 Succinylarginine dihydrolase XBJ1_2940 PF00171 Aldehyde dehydrogenase family XBJ1_2941 PF04958 Arginine N-succinyltransferase beta subunit XBJ1_2942 PF00202 Aminotransferase class-III XBJ1_2943 PF16326 ABC transporter C-terminal domain XBJ1_2943 PF00005 ABC transporter XBJ1_2943 PF12848 ABC transporter XBJ1_2945 PF00005 ABC transporter XBJ1_2946 PF00550 Phosphopantetheine attachment site XBJ1_2946 PF07993 Male sterility protein XBJ1_2946 PF00668 Condensation domain XBJ1_2946 PF00501 AMP-binding enzyme XBJ1_2946 PF13193 AMP-binding enzyme C-terminal domain XBJ1_2948 PF00795 Carbon-nitrogen hydrolase XBJ1_2951 PF00698 Acyl transferase domain XBJ1_2951 PF03060 Nitronate monooxygenase XBJ1_2952 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2952 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2953 PF08990 Erythronolide synthase docking XBJ1_2953 PF00550 Phosphopantetheine attachment site XBJ1_2953 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2953 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2953 PF00698 Acyl transferase domain XBJ1_2953 PF16197 Ketoacyl-synthetase C-terminal extension XBJ1_2953 PF08659 KR domain XBJ1_2955 PF00293 NUDIX domain XBJ1_2956 PF02798 Glutathione S-transferase, N-terminal domain XBJ1_2956 PF00043 Glutathione S-transferase, C-terminal domain XBJ1_2957 PF01370 NAD dependent epimerase/dehydratase family XBJ1_2957 PF08338 Domain of unknown function (DUF1731) XBJ1_2958 PF02441 Flavoprotein XBJ1_2959 PF00156 Phosphoribosyl transferase domain XBJ1_2960 PF02674 Colicin V production protein XBJ1_2961 PF05036 Sporulation related domain XBJ1_2962 PF02875 Mur ligase family, glutamate ligase domain XBJ1_2962 PF08245 Mur ligase middle domain XBJ1_2963 PF01039 Carboxyl transferase domain XBJ1_2963 PF17848 Acetyl-coA carboxylase zinc finger domain XBJ1_2964 PF09335 SNARE associated Golgi protein XBJ1_2965 PF01416 tRNA pseudouridine synthase XBJ1_2966 PF02774 Semialdehyde dehydrogenase, dimerisation domain XBJ1_2966 PF01118 Semialdehyde dehydrogenase, NAD binding domain XBJ1_2967 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XBJ1_2967 PF11890 Domain of unknown function (DUF3410) XBJ1_2967 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XBJ1_2969 PF03400 IS1 transposase XBJ1_2970 PF12759 InsA C-terminal domain XBJ1_2970 PF03811 InsA N-terminal domain XBJ1_2972 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_2972 PF08521 Two-component sensor kinase N-terminal XBJ1_2973 PF00486 Transcriptional regulatory protein, C terminal XBJ1_2973 PF00072 Response regulator receiver domain XBJ1_2975 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_2975 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_2976 PF01266 FAD dependent oxidoreductase XBJ1_2976 PF05430 S-adenosyl-L-methionine-dependent methyltransferase XBJ1_2977 PF00583 Acetyltransferase (GNAT) family XBJ1_2978 PF08891 YfcL protein XBJ1_2979 PF04315 Elongation factor P hydroxylase XBJ1_2980 PF01925 Sulfite exporter TauE/SafE XBJ1_2981 PF01264 Chorismate synthase XBJ1_2982 PF05175 Methyltransferase small domain XBJ1_2983 PF00324 Amino acid permease XBJ1_2984 PF00221 Aromatic amino acid lyase XBJ1_2985 PF01175 Urocanase Rossmann-like domain XBJ1_2985 PF17392 Urocanase C-terminal domain XBJ1_2985 PF17391 Urocanase N-terminal domain XBJ1_2986 PF07702 UTRA domain XBJ1_2986 PF00392 Bacterial regulatory proteins, gntR family XBJ1_2987 PF00491 Arginase family XBJ1_2988 PF01979 Amidohydrolase family XBJ1_2989 PF01713 Smr domain XBJ1_2990 PF00300 Histidine phosphatase superfamily (branch 1) XBJ1_2992 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XBJ1_2992 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XBJ1_2992 PF00378 Enoyl-CoA hydratase/isomerase XBJ1_2993 PF00108 Thiolase, N-terminal domain XBJ1_2993 PF02803 Thiolase, C-terminal domain XBJ1_2994 PF04175 Protein of unknown function (DUF406) XBJ1_2995 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XBJ1_2996 PF04333 MlaA lipoprotein XBJ1_2997 PF07484 Phage Tail Collar Domain XBJ1_3000 PF01218 Coproporphyrinogen III oxidase XBJ1_3001 PF02868 Thermolysin metallopeptidase, alpha-helical domain XBJ1_3001 PF01447 Thermolysin metallopeptidase, catalytic domain XBJ1_3001 PF16485 Protealysin propeptide XBJ1_3003 PF01926 50S ribosome-binding GTPase XBJ1_3003 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XBJ1_3004 PF13360 PQQ-like domain XBJ1_3005 PF09976 Tetratricopeptide repeat-like domain XBJ1_3006 PF03129 Anticodon binding domain XBJ1_3006 PF13393 Histidyl-tRNA synthetase XBJ1_3007 PF04551 GcpE protein XBJ1_3008 PF13464 Domain of unknown function (DUF4115) XBJ1_3011 PF04055 Radical SAM superfamily XBJ1_3013 PF00334 Nucleoside diphosphate kinase XBJ1_3015 PF13443 Cro/C1-type HTH DNA-binding domain XBJ1_3018 PF00905 Penicillin binding protein transpeptidase domain XBJ1_3018 PF06832 Penicillin-Binding Protein C-terminus Family XBJ1_3018 PF00912 Transglycosylase XBJ1_3019 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XBJ1_3019 PF17962 Bacterial macroglobulin domain 6 XBJ1_3019 PF01835 MG2 domain XBJ1_3019 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XBJ1_3019 PF07678 A-macroglobulin TED domain XBJ1_3019 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XBJ1_3019 PF00207 Alpha-2-macroglobulin family XBJ1_3019 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XBJ1_3019 PF07703 Alpha-2-macroglobulin bait region domain XBJ1_3021 PF12404 Peptidase XBJ1_3021 PF00883 Cytosol aminopeptidase family, catalytic domain XBJ1_3022 PF04384 Iron-sulphur cluster assembly XBJ1_3023 PF00111 2Fe-2S iron-sulfur cluster binding domain XBJ1_3024 PF00012 Hsp70 protein XBJ1_3025 PF07743 HSCB C-terminal oligomerisation domain XBJ1_3026 PF01521 Iron-sulphur cluster biosynthesis XBJ1_3027 PF01592 NifU-like N terminal domain XBJ1_3028 PF00266 Aminotransferase class-V XBJ1_3029 PF02082 Transcriptional regulator XBJ1_3030 PF00588 SpoU rRNA Methylase family XBJ1_3031 PF00459 Inositol monophosphatase family XBJ1_3032 PF12832 MFS_1 like family XBJ1_3033 PF00464 Serine hydroxymethyltransferase XBJ1_3034 PF00042 Globin XBJ1_3034 PF00175 Oxidoreductase NAD-binding domain XBJ1_3034 PF00970 Oxidoreductase FAD-binding domain XBJ1_3035 PF00543 Nitrogen regulatory protein P-II XBJ1_3036 PF02540 NAD synthase XBJ1_3036 PF00795 Carbon-nitrogen hydrolase XBJ1_3037 PF00158 Sigma-54 interaction domain XBJ1_3037 PF00072 Response regulator receiver domain XBJ1_3038 PF13942 YfhG lipoprotein XBJ1_3039 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_3039 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_3040 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XBJ1_3040 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XBJ1_3040 PF02769 AIR synthase related protein, C-terminal domain XBJ1_3041 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_3041 PF01464 Transglycosylase SLT domain XBJ1_3042 PF14437 MafB19-like deaminase XBJ1_3043 PF01966 HD domain XBJ1_3045 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain XBJ1_3045 PF00730 HhH-GPD superfamily base excision DNA repair protein XBJ1_3054 PF07484 Phage Tail Collar Domain XBJ1_3055 PF01609 Transposase DDE domain XBJ1_3057 PF03400 IS1 transposase XBJ1_3058 PF12759 InsA C-terminal domain XBJ1_3058 PF03811 InsA N-terminal domain XBJ1_3071 PF01464 Transglycosylase SLT domain XBJ1_3071 PF01476 LysM domain XBJ1_3072 PF00753 Metallo-beta-lactamase superfamily XBJ1_3072 PF16123 Hydroxyacylglutathione hydrolase C-terminus XBJ1_3073 PF08241 Methyltransferase domain XBJ1_3074 PF00075 RNase H XBJ1_3075 PF00929 Exonuclease XBJ1_3077 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XBJ1_3078 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system XBJ1_3080 PF02779 Transketolase, pyrimidine binding domain XBJ1_3080 PF00456 Transketolase, thiamine diphosphate binding domain XBJ1_3080 PF02780 Transketolase, C-terminal domain XBJ1_3081 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XBJ1_3081 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XBJ1_3082 PF00162 Phosphoglycerate kinase XBJ1_3083 PF01116 Fructose-bisphosphate aldolase class-II XBJ1_3085 PF05785 Rho-activating domain of cytotoxic necrotizing factor XBJ1_3085 PF18807 Tripartite Tc toxins repeat XBJ1_3087 PF00144 Beta-lactamase XBJ1_3089 PF07690 Major Facilitator Superfamily XBJ1_3090 PF00072 Response regulator receiver domain XBJ1_3090 PF00196 Bacterial regulatory proteins, luxR family XBJ1_3091 PF00872 Transposase, Mutator family XBJ1_3093 PF09190 DALR domain XBJ1_3093 PF01406 tRNA synthetases class I (C) catalytic domain XBJ1_3094 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XBJ1_3095 PF00149 Calcineurin-like phosphoesterase XBJ1_3096 PF00731 AIR carboxylase XBJ1_3097 PF02222 ATP-grasp domain XBJ1_3097 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XBJ1_3098 PF00677 Lumazine binding domain XBJ1_3099 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_3099 PF00107 Zinc-binding dehydrogenase XBJ1_3099 PF13823 Alcohol dehydrogenase GroES-associated XBJ1_3101 PF00665 Integrase core domain XBJ1_3101 PF13333 Integrase core domain XBJ1_3101 PF13276 HTH-like domain XBJ1_3105 PF18624 CDI immunity protein XBJ1_3106 PF05594 Haemagluttinin repeat XBJ1_3106 PF13332 Hemagglutinin repeat XBJ1_3106 PF05860 haemagglutination activity domain XBJ1_3106 PF04829 Pre-toxin domain with VENN motif XBJ1_3106 PF14436 Bacterial EndoU nuclease XBJ1_3108 PF01609 Transposase DDE domain XBJ1_3108 PF13808 DDE_Tnp_1-associated XBJ1_3109 PF03400 IS1 transposase XBJ1_3110 PF03811 InsA N-terminal domain XBJ1_3110 PF12759 InsA C-terminal domain XBJ1_3112 PF13358 DDE superfamily endonuclease XBJ1_3114 PF03692 Putative zinc- or iron-chelating domain XBJ1_3116 PF00749 tRNA synthetases class I (E and Q), catalytic domain XBJ1_3117 PF12843 Putative quorum-sensing-regulated virulence factor XBJ1_3118 PF07662 Na+ dependent nucleoside transporter C-terminus XBJ1_3118 PF07670 Nucleoside recognition XBJ1_3118 PF01773 Na+ dependent nucleoside transporter N-terminus XBJ1_3119 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XBJ1_3119 PF03120 NAD-dependent DNA ligase OB-fold domain XBJ1_3119 PF01653 NAD-dependent DNA ligase adenylation domain XBJ1_3119 PF00533 BRCA1 C Terminus (BRCT) domain XBJ1_3119 PF12826 Helix-hairpin-helix motif XBJ1_3120 PF04354 ZipA, C-terminal FtsZ-binding domain XBJ1_3122 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_3124 PF00381 PTS HPr component phosphorylation site XBJ1_3126 PF00391 PEP-utilising enzyme, mobile domain XBJ1_3126 PF05524 PEP-utilising enzyme, N-terminal XBJ1_3126 PF02896 PEP-utilising enzyme, TIM barrel domain XBJ1_3127 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XBJ1_3128 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_3129 PF00005 ABC transporter XBJ1_3131 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3132 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3134 PF06572 Protein of unknown function (DUF1131) XBJ1_3137 PF00583 Acetyltransferase (GNAT) family XBJ1_3142 PF12838 4Fe-4S dicluster domain XBJ1_3143 PF01648 4'-phosphopantetheinyl transferase superfamily XBJ1_3144 PF01648 4'-phosphopantetheinyl transferase superfamily XBJ1_3145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XBJ1_3146 PF11967 Recombination protein O N terminal XBJ1_3146 PF02565 Recombination protein O C terminal XBJ1_3147 PF07650 KH domain XBJ1_3147 PF01926 50S ribosome-binding GTPase XBJ1_3148 PF14622 Ribonuclease-III-like XBJ1_3148 PF00035 Double-stranded RNA binding motif XBJ1_3149 PF10502 Signal peptidase, peptidase S26 XBJ1_3150 PF03144 Elongation factor Tu domain 2 XBJ1_3150 PF00009 Elongation factor Tu GTP binding domain XBJ1_3150 PF06421 GTP-binding protein LepA C-terminus XBJ1_3150 PF00679 Elongation factor G C-terminus XBJ1_3152 PF17188 MucB/RseB C-terminal domain XBJ1_3152 PF03888 MucB/RseB N-terminal domain XBJ1_3153 PF03872 Anti sigma-E protein RseA, N-terminal domain XBJ1_3153 PF03873 Anti sigma-E protein RseA, C-terminal domain XBJ1_3154 PF04542 Sigma-70 region 2 XBJ1_3154 PF08281 Sigma-70, region 4 XBJ1_3155 PF05175 Methyltransferase small domain XBJ1_3156 PF00270 DEAD/DEAH box helicase XBJ1_3156 PF00271 Helicase conserved C-terminal domain XBJ1_3158 PF03167 Uracil DNA glycosylase superfamily XBJ1_3159 PF01025 GrpE XBJ1_3160 PF01513 ATP-NAD kinase XBJ1_3161 PF02463 RecF/RecN/SMC N terminal domain XBJ1_3162 PF04355 SmpA / OmlA family XBJ1_3163 PF03658 RnfH family Ubiquitin XBJ1_3164 PF03364 Polyketide cyclase / dehydrase and lipid transport XBJ1_3165 PF01668 SmpB protein XBJ1_3167 PF07828 PA-IL-like protein XBJ1_3168 PF13358 DDE superfamily endonuclease XBJ1_3171 PF03400 IS1 transposase XBJ1_3172 PF03811 InsA N-terminal domain XBJ1_3172 PF12759 InsA C-terminal domain XBJ1_3174 PF00367 phosphotransferase system, EIIB XBJ1_3174 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XBJ1_3174 PF02378 Phosphotransferase system, EIIC XBJ1_3175 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XBJ1_3176 PF01979 Amidohydrolase family XBJ1_3177 PF01047 MarR family XBJ1_3177 PF00480 ROK family XBJ1_3180 PF02371 Transposase IS116/IS110/IS902 family XBJ1_3180 PF01548 Transposase XBJ1_3182 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XBJ1_3184 PF01797 Transposase IS200 like XBJ1_3187 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XBJ1_3188 PF04221 RelB antitoxin XBJ1_3192 PF11008 Protein of unknown function (DUF2846) XBJ1_3194 PF03400 IS1 transposase XBJ1_3195 PF03811 InsA N-terminal domain XBJ1_3195 PF12759 InsA C-terminal domain XBJ1_3196 PF01494 FAD binding domain XBJ1_3197 PF04055 Radical SAM superfamily XBJ1_3197 PF00919 Uncharacterized protein family UPF0004 XBJ1_3197 PF01938 TRAM domain XBJ1_3198 PF02562 PhoH-like protein XBJ1_3199 PF02130 Uncharacterized protein family UPF0054 XBJ1_3200 PF03471 Transporter associated domain XBJ1_3200 PF00571 CBS domain XBJ1_3201 PF00795 Carbon-nitrogen hydrolase XBJ1_3202 PF00497 Bacterial extracellular solute-binding proteins, family 3 XBJ1_3203 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3204 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3205 PF00005 ABC transporter XBJ1_3206 PF00133 tRNA synthetases class I (I, L, M and V) XBJ1_3206 PF08264 Anticodon-binding domain of tRNA XBJ1_3206 PF13603 Leucyl-tRNA synthetase, Domain 2 XBJ1_3207 PF04390 Lipopolysaccharide-assembly XBJ1_3208 PF06144 DNA polymerase III, delta subunit XBJ1_3208 PF14840 Processivity clamp loader gamma complex DNA pol III C-term XBJ1_3209 PF01467 Cytidylyltransferase-like XBJ1_3211 PF02590 Predicted SPOUT methyltransferase XBJ1_3212 PF00905 Penicillin binding protein transpeptidase domain XBJ1_3212 PF03717 Penicillin-binding Protein dimerisation domain XBJ1_3213 PF01098 Cell cycle protein XBJ1_3214 PF05036 Sporulation related domain XBJ1_3214 PF03330 Lytic transglycolase XBJ1_3215 PF00768 D-alanyl-D-alanine carboxypeptidase XBJ1_3215 PF07943 Penicillin-binding protein 5, C-terminal domain XBJ1_3216 PF04359 Protein of unknown function (DUF493) XBJ1_3217 PF02386 Cation transport protein XBJ1_3219 PF04055 Radical SAM superfamily XBJ1_3219 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XBJ1_3220 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XBJ1_3221 PF00313 'Cold-shock' DNA-binding domain XBJ1_3222 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XBJ1_3222 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XBJ1_3226 PF00005 ABC transporter XBJ1_3226 PF00571 CBS domain XBJ1_3227 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3228 PF04069 Substrate binding domain of ABC-type glycine betaine transport system XBJ1_3229 PF03591 AzlC protein XBJ1_3230 PF05437 Branched-chain amino acid transport protein (AzlD) XBJ1_3232 PF01047 MarR family XBJ1_3234 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XBJ1_3234 PF00529 HlyD membrane-fusion protein of T1SS XBJ1_3235 PF07690 Major Facilitator Superfamily XBJ1_3236 PF13599 Pentapeptide repeats (9 copies) XBJ1_3238 PF04183 IucA / IucC family XBJ1_3238 PF06276 Ferric iron reductase FhuF-like transporter XBJ1_3239 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) XBJ1_3240 PF06276 Ferric iron reductase FhuF-like transporter XBJ1_3240 PF11575 FhuF 2Fe-2S C-terminal domain XBJ1_3241 PF00005 ABC transporter XBJ1_3242 PF01032 FecCD transport family XBJ1_3243 PF01032 FecCD transport family XBJ1_3244 PF01497 Periplasmic binding protein XBJ1_3245 PF07715 TonB-dependent Receptor Plug Domain XBJ1_3245 PF00593 TonB dependent receptor XBJ1_3248 PF00588 SpoU rRNA Methylase family XBJ1_3248 PF08032 RNA 2'-O ribose methyltransferase substrate binding XBJ1_3250 PF00583 Acetyltransferase (GNAT) family XBJ1_3250 PF13380 CoA binding domain XBJ1_3250 PF13607 Succinyl-CoA ligase like flavodoxin domain XBJ1_3251 PF13091 PLD-like domain XBJ1_3253 PF10043 Predicted periplasmic lipoprotein (DUF2279) XBJ1_3257 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_3257 PF02861 Clp amino terminal domain, pathogenicity island component XBJ1_3257 PF17871 AAA lid domain XBJ1_3257 PF07724 AAA domain (Cdc48 subfamily) XBJ1_3257 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_3259 PF00849 RNA pseudouridylate synthase XBJ1_3259 PF01479 S4 domain XBJ1_3260 PF13525 Outer membrane lipoprotein XBJ1_3261 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XBJ1_3262 PF00800 Prephenate dehydratase XBJ1_3262 PF01817 Chorismate mutase type II XBJ1_3263 PF02153 Prephenate dehydrogenase XBJ1_3263 PF01817 Chorismate mutase type II XBJ1_3264 PF00793 DAHP synthetase I family XBJ1_3266 PF01245 Ribosomal protein L19 XBJ1_3267 PF01746 tRNA (Guanine-1)-methyltransferase XBJ1_3268 PF01782 RimM N-terminal domain XBJ1_3268 PF05239 PRC-barrel domain XBJ1_3269 PF00886 Ribosomal protein S16 XBJ1_3270 PF00448 SRP54-type protein, GTPase domain XBJ1_3270 PF02978 Signal peptide binding domain XBJ1_3270 PF02881 SRP54-type protein, helical bundle domain XBJ1_3271 PF01578 Cytochrome C assembly protein XBJ1_3272 PF00571 CBS domain XBJ1_3272 PF01595 Cyclin M transmembrane N-terminal domain XBJ1_3272 PF03471 Transporter associated domain XBJ1_3273 PF03400 IS1 transposase XBJ1_3274 PF03811 InsA N-terminal domain XBJ1_3274 PF12759 InsA C-terminal domain XBJ1_3281 PF02664 S-Ribosylhomocysteinase (LuxS) XBJ1_3282 PF04262 Glutamate-cysteine ligase XBJ1_3285 PF02599 Global regulator protein family XBJ1_3286 PF01411 tRNA synthetases class II (A) XBJ1_3286 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XBJ1_3286 PF02272 DHHA1 domain XBJ1_3287 PF00154 recA bacterial DNA recombination protein XBJ1_3288 PF02464 Competence-damaged protein XBJ1_3289 PF07690 Major Facilitator Superfamily XBJ1_3290 PF01553 Acyltransferase XBJ1_3290 PF00501 AMP-binding enzyme XBJ1_3290 PF13193 AMP-binding enzyme C-terminal domain XBJ1_3291 PF12759 InsA C-terminal domain XBJ1_3291 PF03811 InsA N-terminal domain XBJ1_3292 PF03400 IS1 transposase XBJ1_3293 PF01553 Acyltransferase XBJ1_3293 PF00501 AMP-binding enzyme XBJ1_3294 PF01202 Shikimate kinase XBJ1_3295 PF00171 Aldehyde dehydrogenase family XBJ1_3296 PF01472 PUA domain XBJ1_3296 PF00696 Amino acid kinase family XBJ1_3297 PF07417 Sigma factor-binding transcriptional regulator Crl XBJ1_3299 PF00156 Phosphoribosyl transferase domain XBJ1_3301 PF07687 Peptidase dimerisation domain XBJ1_3301 PF01546 Peptidase family M20/M25/M40 XBJ1_3302 PF00817 impB/mucB/samB family XBJ1_3302 PF11799 impB/mucB/samB family C-terminal domain XBJ1_3302 PF11798 IMS family HHH motif XBJ1_3303 PF07690 Major Facilitator Superfamily XBJ1_3305 PF02028 BCCT, betaine/carnitine/choline family transporter XBJ1_3306 PF00440 Bacterial regulatory proteins, tetR family XBJ1_3306 PF13977 BetI-type transcriptional repressor, C-terminal XBJ1_3307 PF00171 Aldehyde dehydrogenase family XBJ1_3308 PF05199 GMC oxidoreductase XBJ1_3308 PF00732 GMC oxidoreductase XBJ1_3309 PF13673 Acetyltransferase (GNAT) domain XBJ1_3311 PF07715 TonB-dependent Receptor Plug Domain XBJ1_3311 PF00593 TonB dependent receptor XBJ1_3313 PF03400 IS1 transposase XBJ1_3314 PF03811 InsA N-terminal domain XBJ1_3314 PF12759 InsA C-terminal domain XBJ1_3315 PF04542 Sigma-70 region 2 XBJ1_3315 PF08281 Sigma-70, region 4 XBJ1_3317 PF04400 (Na+)-NQR maturation NqrM XBJ1_3318 PF02424 ApbE family XBJ1_3319 PF00111 2Fe-2S iron-sulfur cluster binding domain XBJ1_3319 PF00175 Oxidoreductase NAD-binding domain XBJ1_3319 PF00970 Oxidoreductase FAD-binding domain XBJ1_3320 PF02508 Rnf-Nqr subunit, membrane protein XBJ1_3321 PF02508 Rnf-Nqr subunit, membrane protein XBJ1_3322 PF04205 FMN-binding domain XBJ1_3323 PF03116 NQR2, RnfD, RnfE family XBJ1_3324 PF11973 NQRA C-terminal domain XBJ1_3324 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) XBJ1_3325 PF03734 L,D-transpeptidase catalytic domain XBJ1_3326 PF01609 Transposase DDE domain XBJ1_3326 PF13808 DDE_Tnp_1-associated XBJ1_3328 PF13230 Glutamine amidotransferases class-II XBJ1_3329 PF13580 SIS domain XBJ1_3330 PF09317 Domain of unknown function (DUF1974) XBJ1_3330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XBJ1_3330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XBJ1_3331 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XBJ1_3331 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XBJ1_3332 PF03466 LysR substrate binding domain XBJ1_3332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3333 PF03466 LysR substrate binding domain XBJ1_3335 PF00753 Metallo-beta-lactamase superfamily XBJ1_3336 PF01478 Type IV leader peptidase family XBJ1_3337 PF04452 RNA methyltransferase XBJ1_3338 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XBJ1_3338 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XBJ1_3339 PF02622 Uncharacterized ACR, COG1678 XBJ1_3340 PF03652 Holliday junction resolvase XBJ1_3341 PF00437 Type II/IV secretion system protein XBJ1_3342 PF01168 Alanine racemase, N-terminal domain XBJ1_3343 PF03807 NADP oxidoreductase coenzyme F420-dependent XBJ1_3343 PF14748 Pyrroline-5-carboxylate reductase dimerisation XBJ1_3344 PF02325 YGGT family XBJ1_3345 PF01725 Ham1 family XBJ1_3346 PF04055 Radical SAM superfamily XBJ1_3346 PF06969 HemN C-terminal domain XBJ1_3347 PF01497 Periplasmic binding protein XBJ1_3348 PF11101 Protein of unknown function (DUF2884) XBJ1_3349 PF04960 Glutaminase XBJ1_3350 PF04320 Protein with unknown function (DUF469) XBJ1_3351 PF02390 Putative methyltransferase XBJ1_3352 PF10576 Iron-sulfur binding domain of endonuclease III XBJ1_3352 PF00633 Helix-hairpin-helix motif XBJ1_3352 PF00730 HhH-GPD superfamily base excision DNA repair protein XBJ1_3352 PF14815 NUDIX domain XBJ1_3353 PF04362 Bacterial Fe(2+) trafficking XBJ1_3354 PF01464 Transglycosylase SLT domain XBJ1_3354 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XBJ1_3355 PF13808 DDE_Tnp_1-associated XBJ1_3355 PF01609 Transposase DDE domain XBJ1_3356 PF03400 IS1 transposase XBJ1_3357 PF12759 InsA C-terminal domain XBJ1_3357 PF03811 InsA N-terminal domain XBJ1_3358 PF05638 Type VI secretion system effector, Hcp XBJ1_3363 PF03811 InsA N-terminal domain XBJ1_3363 PF12759 InsA C-terminal domain XBJ1_3364 PF03400 IS1 transposase XBJ1_3367 PF13356 Arm DNA-binding domain XBJ1_3367 PF00589 Phage integrase family XBJ1_3370 PF00772 DnaB-like helicase N terminal domain XBJ1_3370 PF03796 DnaB-like helicase C terminal domain XBJ1_3377 PF01751 Toprim domain XBJ1_3377 PF01131 DNA topoisomerase XBJ1_3380 PF00436 Single-strand binding protein family XBJ1_3383 PF13693 Winged helix-turn-helix DNA-binding XBJ1_3402 PF09134 Invasin, domain 3 XBJ1_3402 PF07979 Intimin C-type lectin domain XBJ1_3402 PF11924 Inverse autotransporter, beta-domain XBJ1_3402 PF02369 Bacterial Ig-like domain (group 1) XBJ1_3404 PF12759 InsA C-terminal domain XBJ1_3404 PF03811 InsA N-terminal domain XBJ1_3405 PF03400 IS1 transposase XBJ1_3408 PF03400 IS1 transposase XBJ1_3409 PF12759 InsA C-terminal domain XBJ1_3409 PF03811 InsA N-terminal domain XBJ1_3412 PF03400 IS1 transposase XBJ1_3413 PF12759 InsA C-terminal domain XBJ1_3413 PF03811 InsA N-terminal domain XBJ1_3421 PF01336 OB-fold nucleic acid binding domain XBJ1_3421 PF00152 tRNA synthetases class II (D, K and N) XBJ1_3422 PF03462 PCRF domain XBJ1_3422 PF00472 RF-1 domain XBJ1_3423 PF17768 RecJ OB domain XBJ1_3423 PF02272 DHHA1 domain XBJ1_3423 PF01368 DHH family XBJ1_3424 PF13098 Thioredoxin-like domain XBJ1_3424 PF10411 Disulfide bond isomerase protein N-terminus XBJ1_3425 PF00589 Phage integrase family XBJ1_3425 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_3426 PF00258 Flavodoxin XBJ1_3428 PF03937 Flavinator of succinate dehydrogenase XBJ1_3430 PF01571 Aminomethyltransferase folate-binding domain XBJ1_3432 PF07690 Major Facilitator Superfamily XBJ1_3434 PF02347 Glycine cleavage system P-protein XBJ1_3435 PF01597 Glycine cleavage H-protein XBJ1_3436 PF01571 Aminomethyltransferase folate-binding domain XBJ1_3436 PF08669 Glycine cleavage T-protein C-terminal barrel domain XBJ1_3437 PF01494 FAD binding domain XBJ1_3438 PF01494 FAD binding domain XBJ1_3439 PF05195 Aminopeptidase P, N-terminal domain XBJ1_3439 PF00557 Metallopeptidase family M24 XBJ1_3440 PF03695 Uncharacterised protein family (UPF0149) XBJ1_3441 PF05164 Cell division protein ZapA XBJ1_3443 PF01812 5-formyltetrahydrofolate cyclo-ligase family XBJ1_3444 PF01842 ACT domain XBJ1_3444 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XBJ1_3444 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XBJ1_3445 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XBJ1_3446 PF03466 LysR substrate binding domain XBJ1_3446 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3447 PF04402 Protein of unknown function (DUF541) XBJ1_3449 PF01810 LysE type translocator XBJ1_3450 PF00924 Mechanosensitive ion channel XBJ1_3450 PF05552 Conserved TM helix XBJ1_3451 PF06062 Uncharacterised protein family (UPF0231) XBJ1_3452 PF11791 Aconitate B N-terminal domain XBJ1_3452 PF00330 Aconitase family (aconitate hydratase) XBJ1_3452 PF06434 Aconitate hydratase 2 N-terminus XBJ1_3453 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XBJ1_3453 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_3454 PF02817 e3 binding domain XBJ1_3454 PF00364 Biotin-requiring enzyme XBJ1_3454 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XBJ1_3455 PF00456 Transketolase, thiamine diphosphate binding domain XBJ1_3455 PF17831 Pyruvate dehydrogenase E1 component middle domain XBJ1_3456 PF00392 Bacterial regulatory proteins, gntR family XBJ1_3456 PF07729 FCD domain XBJ1_3457 PF17113 Regulatory signalling modulator protein AmpE XBJ1_3458 PF01510 N-acetylmuramoyl-L-alanine amidase XBJ1_3459 PF07963 Prokaryotic N-terminal methylation motif XBJ1_3460 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XBJ1_3460 PF00437 Type II/IV secretion system protein XBJ1_3461 PF00482 Type II secretion system (T2SS), protein F XBJ1_3462 PF01121 Dephospho-CoA kinase XBJ1_3463 PF07072 Cell division protein XBJ1_3464 PF03884 DNA gyrase inhibitor YacG XBJ1_3465 PF00293 NUDIX domain XBJ1_3466 PF12848 ABC transporter XBJ1_3466 PF00005 ABC transporter XBJ1_3466 PF16326 ABC transporter C-terminal domain XBJ1_3467 PF07516 SecA Wing and Scaffold domain XBJ1_3467 PF01043 SecA preprotein cross-linking domain XBJ1_3467 PF07517 SecA DEAD-like domain XBJ1_3467 PF02810 SEC-C motif XBJ1_3468 PF06558 Secretion monitor precursor protein (SecM) XBJ1_3470 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XBJ1_3471 PF00091 Tubulin/FtsZ family, GTPase domain XBJ1_3471 PF12327 FtsZ family, C-terminal domain XBJ1_3472 PF02491 SHS2 domain inserted in FTSA XBJ1_3473 PF08478 POTRA domain, FtsQ-type XBJ1_3473 PF03799 Cell division protein FtsQ XBJ1_3474 PF07478 D-ala D-ala ligase C-terminus XBJ1_3474 PF01820 D-ala D-ala ligase N-terminus XBJ1_3475 PF02875 Mur ligase family, glutamate ligase domain XBJ1_3475 PF08245 Mur ligase middle domain XBJ1_3475 PF01225 Mur ligase family, catalytic domain XBJ1_3476 PF03033 Glycosyltransferase family 28 N-terminal domain XBJ1_3476 PF04101 Glycosyltransferase family 28 C-terminal domain XBJ1_3477 PF01098 Cell cycle protein XBJ1_3478 PF08245 Mur ligase middle domain XBJ1_3478 PF02875 Mur ligase family, glutamate ligase domain XBJ1_3479 PF00953 Glycosyl transferase family 4 XBJ1_3479 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 XBJ1_3480 PF08245 Mur ligase middle domain XBJ1_3480 PF02875 Mur ligase family, glutamate ligase domain XBJ1_3480 PF01225 Mur ligase family, catalytic domain XBJ1_3481 PF01225 Mur ligase family, catalytic domain XBJ1_3481 PF08245 Mur ligase middle domain XBJ1_3481 PF02875 Mur ligase family, glutamate ligase domain XBJ1_3482 PF00905 Penicillin binding protein transpeptidase domain XBJ1_3482 PF03717 Penicillin-binding Protein dimerisation domain XBJ1_3483 PF04999 Cell division protein FtsL XBJ1_3484 PF01795 MraW methylase family XBJ1_3485 PF02381 MraZ protein, putative antitoxin-like XBJ1_3486 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XBJ1_3486 PF00356 Bacterial regulatory proteins, lacI family XBJ1_3487 PF10369 Small subunit of acetolactate synthase XBJ1_3488 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XBJ1_3488 PF00205 Thiamine pyrophosphate enzyme, central domain XBJ1_3488 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XBJ1_3489 PF00501 AMP-binding enzyme XBJ1_3490 PF03466 LysR substrate binding domain XBJ1_3490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3493 PF00682 HMGL-like XBJ1_3493 PF08502 LeuA allosteric (dimerisation) domain XBJ1_3494 PF00180 Isocitrate/isopropylmalate dehydrogenase XBJ1_3495 PF02976 DNA mismatch repair enzyme MutH XBJ1_3497 PF01327 Polypeptide deformylase XBJ1_3498 PF13358 DDE superfamily endonuclease XBJ1_3499 PF01327 Polypeptide deformylase XBJ1_3500 PF01053 Cys/Met metabolism PLP-dependent enzyme XBJ1_3501 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_3501 PF00571 CBS domain XBJ1_3506 PF16363 GDP-mannose 4,6 dehydratase XBJ1_3509 PF12759 InsA C-terminal domain XBJ1_3509 PF03811 InsA N-terminal domain XBJ1_3510 PF00994 Probable molybdopterin binding domain XBJ1_3511 PF00923 Transaldolase/Fructose-6-phosphate aldolase XBJ1_3512 PF03883 Peroxide stress protein YaaA XBJ1_3513 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_3513 PF14821 Threonine synthase N terminus XBJ1_3514 PF00288 GHMP kinases N terminal domain XBJ1_3514 PF08544 GHMP kinases C terminal XBJ1_3515 PF00742 Homoserine dehydrogenase XBJ1_3515 PF03447 Homoserine dehydrogenase, NAD binding domain XBJ1_3515 PF01842 ACT domain XBJ1_3515 PF00696 Amino acid kinase family XBJ1_3515 PF13840 ACT domain XBJ1_3517 PF00072 Response regulator receiver domain XBJ1_3517 PF00486 Transcriptional regulatory protein, C terminal XBJ1_3518 PF05981 CreA protein XBJ1_3520 PF06445 GyrI-like small molecule binding domain XBJ1_3520 PF12833 Helix-turn-helix domain XBJ1_3521 PF00300 Histidine phosphatase superfamily (branch 1) XBJ1_3522 PF01931 Protein of unknown function DUF84 XBJ1_3523 PF01371 Trp repressor protein XBJ1_3524 PF01464 Transglycosylase SLT domain XBJ1_3524 PF14718 Soluble lytic murein transglycosylase L domain XBJ1_3525 PF12848 ABC transporter XBJ1_3525 PF00005 ABC transporter XBJ1_3526 PF00005 ABC transporter XBJ1_3526 PF02687 FtsX-like permease family XBJ1_3526 PF12704 MacB-like periplasmic core domain XBJ1_3527 PF01381 Helix-turn-helix XBJ1_3527 PF13521 AAA domain XBJ1_3528 PF18073 Rubredoxin metal binding domain XBJ1_3529 PF18429 Domain of unknown function (DUF5609) XBJ1_3530 PF10144 Bacterial virulence factor haemolysin XBJ1_3532 PF00589 Phage integrase family XBJ1_3533 PF01381 Helix-turn-helix XBJ1_3536 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XBJ1_3536 PF02753 Pili assembly chaperone PapD, C-terminal domain XBJ1_3537 PF13953 PapC C-terminal domain XBJ1_3537 PF13954 PapC N-terminal domain XBJ1_3537 PF00577 Outer membrane usher protein XBJ1_3538 PF00419 Fimbrial protein XBJ1_3539 PF01048 Phosphorylase superfamily XBJ1_3540 PF01676 Metalloenzyme superfamily XBJ1_3541 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain XBJ1_3541 PF00591 Glycosyl transferase family, a/b domain XBJ1_3541 PF02885 Glycosyl transferase family, helical bundle domain XBJ1_3542 PF01791 DeoC/LacD family aldolase XBJ1_3543 PF01773 Na+ dependent nucleoside transporter N-terminus XBJ1_3543 PF07670 Nucleoside recognition XBJ1_3543 PF07662 Na+ dependent nucleoside transporter C-terminus XBJ1_3544 PF01026 TatD related DNase XBJ1_3545 PF01734 Patatin-like phospholipase XBJ1_3546 PF12759 InsA C-terminal domain XBJ1_3546 PF03811 InsA N-terminal domain XBJ1_3547 PF03400 IS1 transposase XBJ1_3548 PF04972 BON domain XBJ1_3549 PF03144 Elongation factor Tu domain 2 XBJ1_3549 PF00009 Elongation factor Tu GTP binding domain XBJ1_3549 PF16658 Class II release factor RF3, C-terminal domain XBJ1_3551 PF00583 Acetyltransferase (GNAT) family XBJ1_3552 PF03603 DNA polymerase III psi subunit XBJ1_3553 PF08468 Methyltransferase small domain N-terminal XBJ1_3553 PF05175 Methyltransferase small domain XBJ1_3555 PF00171 Aldehyde dehydrogenase family XBJ1_3557 PF01266 FAD dependent oxidoreductase XBJ1_3558 PF01156 Inosine-uridine preferring nucleoside hydrolase XBJ1_3560 PF01381 Helix-turn-helix XBJ1_3561 PF13693 Winged helix-turn-helix DNA-binding XBJ1_3562 PF00893 Small Multidrug Resistance protein XBJ1_3564 PF01548 Transposase XBJ1_3564 PF02371 Transposase IS116/IS110/IS902 family XBJ1_3566 PF02371 Transposase IS116/IS110/IS902 family XBJ1_3566 PF01548 Transposase XBJ1_3567 PF01132 Elongation factor P (EF-P) OB domain XBJ1_3567 PF08207 Elongation factor P (EF-P) KOW-like domain XBJ1_3567 PF09285 Elongation factor P, C-terminal XBJ1_3568 PF04055 Radical SAM superfamily XBJ1_3569 PF13698 Domain of unknown function (DUF4156) XBJ1_3570 PF00118 TCP-1/cpn60 chaperonin family XBJ1_3571 PF00166 Chaperonin 10 Kd subunit XBJ1_3572 PF04186 FxsA cytoplasmic membrane protein XBJ1_3573 PF10415 Fumarase C C-terminus XBJ1_3573 PF00206 Lyase XBJ1_3575 PF00313 'Cold-shock' DNA-binding domain XBJ1_3579 PF00488 MutS domain V XBJ1_3579 PF05188 MutS domain II XBJ1_3579 PF05190 MutS family domain IV XBJ1_3579 PF05192 MutS domain III XBJ1_3579 PF01624 MutS domain I XBJ1_3581 PF00140 Sigma-70 factor, region 1.2 XBJ1_3581 PF04542 Sigma-70 region 2 XBJ1_3581 PF04539 Sigma-70 region 3 XBJ1_3581 PF04545 Sigma-70, region 4 XBJ1_3582 PF01551 Peptidase family M23 XBJ1_3582 PF01476 LysM domain XBJ1_3584 PF01975 Survival protein SurE XBJ1_3589 PF13610 DDE domain XBJ1_3592 PF03400 IS1 transposase XBJ1_3593 PF12759 InsA C-terminal domain XBJ1_3593 PF03811 InsA N-terminal domain XBJ1_3595 PF03400 IS1 transposase XBJ1_3596 PF03811 InsA N-terminal domain XBJ1_3596 PF12759 InsA C-terminal domain XBJ1_3599 PF01613 Flavin reductase like domain XBJ1_3600 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal XBJ1_3600 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal XBJ1_3601 PF01142 tRNA pseudouridine synthase D (TruD) XBJ1_3602 PF02542 YgbB family XBJ1_3603 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XBJ1_3604 PF04977 Septum formation initiator XBJ1_3607 PF00009 Elongation factor Tu GTP binding domain XBJ1_3608 PF01507 Phosphoadenosine phosphosulfate reductase family XBJ1_3609 PF10414 Sirohaem synthase dimerisation region XBJ1_3609 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_3609 PF14824 Sirohaem biosynthesis protein central XBJ1_3610 PF01507 Phosphoadenosine phosphosulfate reductase family XBJ1_3611 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XBJ1_3611 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XBJ1_3612 PF00258 Flavodoxin XBJ1_3612 PF00667 FAD binding domain XBJ1_3612 PF00175 Oxidoreductase NAD-binding domain XBJ1_3613 PF01242 6-pyruvoyl tetrahydropterin synthase XBJ1_3614 PF04055 Radical SAM superfamily XBJ1_3615 PF00324 Amino acid permease XBJ1_3616 PF03372 Endonuclease/Exonuclease/phosphatase family XBJ1_3617 PF07929 Plasmid pRiA4b ORF-3-like protein XBJ1_3618 PF00557 Metallopeptidase family M24 XBJ1_3619 PF00884 Sulfatase XBJ1_3620 PF02554 Carbon starvation protein CstA XBJ1_3620 PF13722 5TM C-terminal transporter carbon starvation CstA XBJ1_3621 PF04328 Selenoprotein, putative XBJ1_3622 PF02492 CobW/HypB/UreG, nucleotide-binding domain XBJ1_3622 PF07683 Cobalamin synthesis protein cobW C-terminal domain XBJ1_3623 PF00589 Phage integrase family XBJ1_3626 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XBJ1_3626 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XBJ1_3627 PF03783 Curli production assembly/transport component CsgG XBJ1_3629 PF05643 Putative bacterial lipoprotein (DUF799) XBJ1_3630 PF01554 MatE XBJ1_3631 PF00005 ABC transporter XBJ1_3631 PF08402 TOBE domain XBJ1_3632 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3640 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) XBJ1_3641 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XBJ1_3641 PF17944 Arginine decarboxylase C-terminal helical extension XBJ1_3641 PF17810 Arginine decarboxylase helical bundle domain XBJ1_3643 PF02772 S-adenosylmethionine synthetase, central domain XBJ1_3643 PF02773 S-adenosylmethionine synthetase, C-terminal domain XBJ1_3643 PF00438 S-adenosylmethionine synthetase, N-terminal domain XBJ1_3644 PF17283 SprT-like zinc ribbon domain XBJ1_3644 PF10263 SprT-like family XBJ1_3648 PF00375 Sodium:dicarboxylate symporter family XBJ1_3649 PF00171 Aldehyde dehydrogenase family XBJ1_3650 PF00939 Sodium:sulfate symporter transmembrane region XBJ1_3651 PF00113 Enolase, C-terminal TIM barrel domain XBJ1_3651 PF03952 Enolase, N-terminal domain XBJ1_3652 PF06418 CTP synthase N-terminus XBJ1_3652 PF00117 Glutamine amidotransferase class-I XBJ1_3653 PF03819 MazG nucleotide pyrophosphohydrolase domain XBJ1_3654 PF04607 Region found in RelA / SpoT proteins XBJ1_3654 PF13291 ACT domain XBJ1_3654 PF02824 TGS domain XBJ1_3655 PF01938 TRAM domain XBJ1_3655 PF05958 tRNA (Uracil-5-)-methyltransferase XBJ1_3656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_3656 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XBJ1_3656 PF00672 HAMP domain XBJ1_3656 PF00072 Response regulator receiver domain XBJ1_3656 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_3656 PF01627 Hpt domain XBJ1_3657 PF01966 HD domain XBJ1_3657 PF13286 Phosphohydrolase-associated domain XBJ1_3658 PF01048 Phosphorylase superfamily XBJ1_3659 PF01497 Periplasmic binding protein XBJ1_3660 PF01521 Iron-sulphur cluster biosynthesis XBJ1_3661 PF00202 Aminotransferase class-III XBJ1_3664 PF14814 Bifunctional transglycosylase second domain XBJ1_3664 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal XBJ1_3664 PF00912 Transglycosylase XBJ1_3664 PF00905 Penicillin binding protein transpeptidase domain XBJ1_3665 PF00271 Helicase conserved C-terminal domain XBJ1_3665 PF08482 ATP-dependent helicase C-terminal XBJ1_3665 PF04408 Helicase associated domain (HA2) XBJ1_3665 PF00270 DEAD/DEAH box helicase XBJ1_3666 PF17746 SfsA N-terminal OB domain XBJ1_3666 PF03749 Sugar fermentation stimulation protein RE domain XBJ1_3667 PF01258 Prokaryotic dksA/traR C4-type zinc finger XBJ1_3668 PF00749 tRNA synthetases class I (E and Q), catalytic domain XBJ1_3669 PF12627 Probable RNA and SrmB- binding site of polymerase A XBJ1_3669 PF12626 Polymerase A arginine-rich C-terminus XBJ1_3669 PF01743 Poly A polymerase head domain XBJ1_3670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XBJ1_3672 PF02548 Ketopantoate hydroxymethyltransferase XBJ1_3673 PF02569 Pantoate-beta-alanine ligase XBJ1_3676 PF02655 ATP-grasp domain XBJ1_3676 PF00206 Lyase XBJ1_3678 PF02261 Aspartate decarboxylase XBJ1_3679 PF01061 ABC-2 type transporter XBJ1_3680 PF00005 ABC transporter XBJ1_3681 PF00484 Carbonic anhydrase XBJ1_3682 PF00156 Phosphoribosyl transferase domain XBJ1_3685 PF00005 ABC transporter XBJ1_3686 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_3688 PF00293 NUDIX domain XBJ1_3689 PF01590 GAF domain XBJ1_3689 PF05524 PEP-utilising enzyme, N-terminal XBJ1_3689 PF02896 PEP-utilising enzyme, TIM barrel domain XBJ1_3689 PF00391 PEP-utilising enzyme, mobile domain XBJ1_3690 PF01790 Prolipoprotein diacylglyceryl transferase XBJ1_3691 PF00303 Thymidylate synthase XBJ1_3692 PF13358 DDE superfamily endonuclease XBJ1_3694 PF07963 Prokaryotic N-terminal methylation motif XBJ1_3697 PF17946 RecC C-terminal domain XBJ1_3698 PF16187 Middle or third domain of peptidase_M16 XBJ1_3698 PF05193 Peptidase M16 inactive domain XBJ1_3698 PF00675 Insulinase (Peptidase family M16) XBJ1_3699 PF12705 PD-(D/E)XK nuclease superfamily XBJ1_3699 PF13361 UvrD-like helicase C-terminal domain XBJ1_3699 PF00580 UvrD/REP helicase N-terminal domain XBJ1_3700 PF13538 UvrD-like helicase C-terminal domain XBJ1_3701 PF00696 Amino acid kinase family XBJ1_3701 PF00583 Acetyltransferase (GNAT) family XBJ1_3703 PF01520 N-acetylmuramoyl-L-alanine amidase XBJ1_3703 PF11741 AMIN domain XBJ1_3706 PF06725 3D domain XBJ1_3706 PF03562 MltA specific insert domain XBJ1_3707 PF00899 ThiF family XBJ1_3708 PF02657 Fe-S metabolism associated domain XBJ1_3709 PF00266 Aminotransferase class-V XBJ1_3711 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XBJ1_3712 PF03400 IS1 transposase XBJ1_3713 PF03811 InsA N-terminal domain XBJ1_3713 PF12759 InsA C-terminal domain XBJ1_3714 PF03062 MBOAT, membrane-bound O-acyltransferase family XBJ1_3722 PF02447 GntP family permease XBJ1_3723 PF01202 Shikimate kinase XBJ1_3724 PF00356 Bacterial regulatory proteins, lacI family XBJ1_3724 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XBJ1_3725 PF00356 Bacterial regulatory proteins, lacI family XBJ1_3726 PF02056 Family 4 glycosyl hydrolase XBJ1_3726 PF11975 Family 4 glycosyl hydrolase C-terminal domain XBJ1_3727 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit XBJ1_3728 PF02378 Phosphotransferase system, EIIC XBJ1_3729 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XBJ1_3732 PF00440 Bacterial regulatory proteins, tetR family XBJ1_3733 PF07690 Major Facilitator Superfamily XBJ1_3743 PF02525 Flavodoxin-like fold XBJ1_3749 PF00270 DEAD/DEAH box helicase XBJ1_3749 PF18019 HD domain XBJ1_3749 PF00271 Helicase conserved C-terminal domain XBJ1_3753 PF09704 CRISPR-associated protein (Cas_Cas5) XBJ1_3755 PF01867 CRISPR associated protein Cas1 XBJ1_3756 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) XBJ1_3766 PF03466 LysR substrate binding domain XBJ1_3766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3770 PF00733 Asparagine synthase XBJ1_3770 PF13537 Glutamine amidotransferase domain XBJ1_3771 PF03400 IS1 transposase XBJ1_3772 PF03811 InsA N-terminal domain XBJ1_3772 PF12759 InsA C-terminal domain XBJ1_3773 PF00733 Asparagine synthase XBJ1_3773 PF13537 Glutamine amidotransferase domain XBJ1_3774 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XBJ1_3777 PF03400 IS1 transposase XBJ1_3779 PF12759 InsA C-terminal domain XBJ1_3779 PF03811 InsA N-terminal domain XBJ1_3781 PF03811 InsA N-terminal domain XBJ1_3781 PF12759 InsA C-terminal domain XBJ1_3782 PF03400 IS1 transposase XBJ1_3787 PF13693 Winged helix-turn-helix DNA-binding XBJ1_3788 PF13693 Winged helix-turn-helix DNA-binding XBJ1_3790 PF02954 Bacterial regulatory protein, Fis family XBJ1_3791 PF01207 Dihydrouridine synthase (Dus) XBJ1_3793 PF00474 Sodium:solute symporter family XBJ1_3794 PF06196 Protein of unknown function (DUF997) XBJ1_3796 PF11924 Inverse autotransporter, beta-domain XBJ1_3796 PF07979 Intimin C-type lectin domain XBJ1_3796 PF02369 Bacterial Ig-like domain (group 1) XBJ1_3796 PF01476 LysM domain XBJ1_3797 PF02785 Biotin carboxylase C-terminal domain XBJ1_3797 PF00289 Biotin carboxylase, N-terminal domain XBJ1_3797 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XBJ1_3798 PF00364 Biotin-requiring enzyme XBJ1_3799 PF01220 Dehydroquinase class II XBJ1_3800 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_3800 PF00107 Zinc-binding dehydrogenase XBJ1_3803 PF04085 rod shape-determining protein MreC XBJ1_3804 PF04093 rod shape-determining protein MreD XBJ1_3805 PF02545 Maf-like protein XBJ1_3806 PF00575 S1 RNA binding domain XBJ1_3806 PF10150 Ribonuclease E/G family XBJ1_3808 PF13116 Protein of unknown function XBJ1_3808 PF13502 AsmA-like C-terminal region XBJ1_3809 PF00795 Carbon-nitrogen hydrolase XBJ1_3810 PF01523 Putative modulator of DNA gyrase XBJ1_3812 PF01337 Barstar (barnase inhibitor) XBJ1_3813 PF13358 DDE superfamily endonuclease XBJ1_3814 PF04751 Protein of unknown function (DUF615) XBJ1_3815 PF01523 Putative modulator of DNA gyrase XBJ1_3816 PF14760 Rnk N-terminus XBJ1_3816 PF01272 Transcription elongation factor, GreA/GreB, C-term XBJ1_3817 PF01168 Alanine racemase, N-terminal domain XBJ1_3817 PF00842 Alanine racemase, C-terminal domain XBJ1_3819 PF00381 PTS HPr component phosphorylation site XBJ1_3820 PF03668 P-loop ATPase protein family XBJ1_3821 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XBJ1_3822 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XBJ1_3823 PF00309 Sigma-54 factor, Activator interacting domain (AID) XBJ1_3823 PF04963 Sigma-54 factor, core binding domain XBJ1_3823 PF04552 Sigma-54, DNA binding domain XBJ1_3824 PF12399 Branched-chain amino acid ATP-binding cassette transporter XBJ1_3824 PF00005 ABC transporter XBJ1_3825 PF03968 OstA-like protein XBJ1_3826 PF06835 Lipopolysaccharide-assembly, LptC-related XBJ1_3828 PF01380 SIS domain XBJ1_3828 PF00571 CBS domain XBJ1_3829 PF01699 Sodium/calcium exchanger protein XBJ1_3830 PF00005 ABC transporter XBJ1_3831 PF02405 Permease MlaE XBJ1_3832 PF02470 MlaD protein XBJ1_3833 PF05494 MlaC protein XBJ1_3835 PF01722 BolA-like protein XBJ1_3836 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XBJ1_3838 PF13180 PDZ domain XBJ1_3839 PF13180 PDZ domain XBJ1_3839 PF00595 PDZ domain XBJ1_3841 PF06295 Protein of unknown function (DUF1043) XBJ1_3843 PF03969 AFG1-like ATPase XBJ1_3844 PF00572 Ribosomal protein L13 XBJ1_3845 PF00380 Ribosomal protein S9/S16 XBJ1_3846 PF02798 Glutathione S-transferase, N-terminal domain XBJ1_3846 PF00043 Glutathione S-transferase, C-terminal domain XBJ1_3847 PF04386 Stringent starvation protein B XBJ1_3851 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XBJ1_3851 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_3852 PF04898 Glutamate synthase central domain XBJ1_3852 PF01645 Conserved region in glutamate synthase XBJ1_3852 PF00310 Glutamine amidotransferases class-II XBJ1_3852 PF01493 GXGXG motif XBJ1_3853 PF00072 Response regulator receiver domain XBJ1_3853 PF18415 Histidine kinase receptor ArcB trans-membrane domain XBJ1_3853 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_3853 PF01627 Hpt domain XBJ1_3853 PF00989 PAS fold XBJ1_3853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_3856 PF00912 Transglycosylase XBJ1_3857 PF04972 BON domain XBJ1_3858 PF13580 SIS domain XBJ1_3859 PF02021 Uncharacterised protein family UPF0102 XBJ1_3860 PF04348 LppC putative lipoprotein XBJ1_3861 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XBJ1_3862 PF17954 Quercetinase C-terminal cupin domain XBJ1_3862 PF02678 Pirin XBJ1_3863 PF03466 LysR substrate binding domain XBJ1_3863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_3864 PF07681 DoxX XBJ1_3865 PF00144 Beta-lactamase XBJ1_3867 PF07332 Putative Actinobacterial Holin-X, holin superfamily III XBJ1_3868 PF05957 Bacterial protein of unknown function (DUF883) XBJ1_3869 PF09335 SNARE associated Golgi protein XBJ1_3870 PF00375 Sodium:dicarboxylate symporter family XBJ1_3871 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_3871 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XBJ1_3873 PF04393 Protein of unknown function (DUF535) XBJ1_3874 PF13673 Acetyltransferase (GNAT) domain XBJ1_3875 PF07690 Major Facilitator Superfamily XBJ1_3878 PF07690 Major Facilitator Superfamily XBJ1_3879 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XBJ1_3880 PF00891 O-methyltransferase domain XBJ1_3880 PF16864 Dimerisation domain XBJ1_3881 PF03781 Sulfatase-modifying factor enzyme 1 XBJ1_3881 PF00069 Protein kinase domain XBJ1_3884 PF00925 GTP cyclohydrolase II XBJ1_3885 PF00581 Rhodanese-like domain XBJ1_3889 PF07350 Protein of unknown function (DUF1479) XBJ1_3890 PF12833 Helix-turn-helix domain XBJ1_3890 PF10114 Sensory domain found in PocR XBJ1_3891 PF12759 InsA C-terminal domain XBJ1_3891 PF03811 InsA N-terminal domain XBJ1_3892 PF03400 IS1 transposase XBJ1_3893 PF13358 DDE superfamily endonuclease XBJ1_3894 PF02801 Beta-ketoacyl synthase, C-terminal domain XBJ1_3894 PF00109 Beta-ketoacyl synthase, N-terminal domain XBJ1_3895 PF02583 Metal-sensitive transcriptional repressor XBJ1_3896 PF00107 Zinc-binding dehydrogenase XBJ1_3896 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_3897 PF00756 Putative esterase XBJ1_3898 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XBJ1_3898 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XBJ1_3902 PF00436 Single-strand binding protein family XBJ1_3903 PF17755 UvrA DNA-binding domain XBJ1_3903 PF00005 ABC transporter XBJ1_3903 PF17760 UvrA interaction domain XBJ1_3906 PF02600 Disulfide bond formation protein DsbB XBJ1_3907 PF03811 InsA N-terminal domain XBJ1_3907 PF12759 InsA C-terminal domain XBJ1_3908 PF03400 IS1 transposase XBJ1_3911 PF00155 Aminotransferase class I and II XBJ1_3912 PF01168 Alanine racemase, N-terminal domain XBJ1_3912 PF00842 Alanine racemase, C-terminal domain XBJ1_3913 PF00772 DnaB-like helicase N terminal domain XBJ1_3913 PF03796 DnaB-like helicase C terminal domain XBJ1_3921 PF03400 IS1 transposase XBJ1_3922 PF12759 InsA C-terminal domain XBJ1_3922 PF03811 InsA N-terminal domain XBJ1_3923 PF12759 InsA C-terminal domain XBJ1_3923 PF03811 InsA N-terminal domain XBJ1_3924 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_3924 PF00107 Zinc-binding dehydrogenase XBJ1_3925 PF01207 Dihydrouridine synthase (Dus) XBJ1_3927 PF07484 Phage Tail Collar Domain XBJ1_3935 PF00877 NlpC/P60 family XBJ1_3948 PF01548 Transposase XBJ1_3948 PF02371 Transposase IS116/IS110/IS902 family XBJ1_3953 PF03354 Phage Terminase XBJ1_3968 PF03589 Antitermination protein XBJ1_3996 PF01475 Ferric uptake regulator family XBJ1_3997 PF00717 Peptidase S24-like XBJ1_3997 PF01726 LexA DNA binding domain XBJ1_3998 PF01219 Prokaryotic diacylglycerol kinase XBJ1_3999 PF01553 Acyltransferase XBJ1_4000 PF01040 UbiA prenyltransferase family XBJ1_4001 PF04345 Chorismate lyase XBJ1_4002 PF00342 Phosphoglucose isomerase XBJ1_4003 PF00696 Amino acid kinase family XBJ1_4003 PF01842 ACT domain XBJ1_4004 PF01614 Bacterial transcriptional regulator XBJ1_4004 PF09339 IclR helix-turn-helix domain XBJ1_4005 PF01081 KDPG and KHG aldolase XBJ1_4007 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XBJ1_4008 PF00463 Isocitrate lyase family XBJ1_4009 PF01274 Malate synthase XBJ1_4010 PF04204 Homoserine O-succinyltransferase XBJ1_4018 PF01808 AICARFT/IMPCHase bienzyme XBJ1_4018 PF02142 MGS-like domain XBJ1_4019 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XBJ1_4019 PF02843 Phosphoribosylglycinamide synthetase, C domain XBJ1_4019 PF02844 Phosphoribosylglycinamide synthetase, N domain XBJ1_4020 PF07356 Protein of unknown function (DUF1481) XBJ1_4021 PF00216 Bacterial DNA-binding protein XBJ1_4022 PF04222 Protein of unknown function (DUF416) XBJ1_4023 PF04493 Endonuclease V XBJ1_4024 PF01208 Uroporphyrinogen decarboxylase (URO-D) XBJ1_4025 PF09297 NADH pyrophosphatase zinc ribbon domain XBJ1_4025 PF00293 NUDIX domain XBJ1_4028 PF13667 ThiC-associated domain XBJ1_4028 PF01964 Radical SAM ThiC family XBJ1_4029 PF02581 Thiamine monophosphate synthase XBJ1_4030 PF00899 ThiF family XBJ1_4032 PF05690 Thiazole biosynthesis protein ThiG XBJ1_4033 PF04055 Radical SAM superfamily XBJ1_4033 PF06968 Biotin and Thiamin Synthesis associated domain XBJ1_4035 PF07690 Major Facilitator Superfamily XBJ1_4036 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_4037 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_4037 PF00107 Zinc-binding dehydrogenase XBJ1_4038 PF00202 Aminotransferase class-III XBJ1_4039 PF17874 MalT-like TPR region XBJ1_4039 PF00196 Bacterial regulatory proteins, luxR family XBJ1_4042 PF00343 Carbohydrate phosphorylase XBJ1_4043 PF02446 4-alpha-glucanotransferase XBJ1_4044 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_4045 PF14785 Maltose transport system permease protein MalF P2 domain XBJ1_4045 PF00528 Binding-protein-dependent transport system inner membrane component XBJ1_4046 PF01547 Bacterial extracellular solute-binding protein XBJ1_4048 PF17912 MalK OB fold domain XBJ1_4048 PF00005 ABC transporter XBJ1_4049 PF02264 LamB porin XBJ1_4050 PF07148 Maltose operon periplasmic protein precursor (MalM) XBJ1_4052 PF01522 Polysaccharide deacetylase XBJ1_4053 PF00623 RNA polymerase Rpb1, domain 2 XBJ1_4053 PF04983 RNA polymerase Rpb1, domain 3 XBJ1_4053 PF04997 RNA polymerase Rpb1, domain 1 XBJ1_4053 PF04998 RNA polymerase Rpb1, domain 5 XBJ1_4053 PF05000 RNA polymerase Rpb1, domain 4 XBJ1_4054 PF04565 RNA polymerase Rpb2, domain 3 XBJ1_4054 PF04561 RNA polymerase Rpb2, domain 2 XBJ1_4054 PF04563 RNA polymerase beta subunit XBJ1_4054 PF00562 RNA polymerase Rpb2, domain 6 XBJ1_4054 PF04560 RNA polymerase Rpb2, domain 7 XBJ1_4054 PF10385 RNA polymerase beta subunit external 1 domain XBJ1_4055 PF00542 Ribosomal protein L7/L12 C-terminal domain XBJ1_4055 PF16320 Ribosomal protein L7/L12 dimerisation domain XBJ1_4056 PF00466 Ribosomal protein L10 XBJ1_4057 PF00687 Ribosomal protein L1p/L10e family XBJ1_4058 PF00298 Ribosomal protein L11, RNA binding domain XBJ1_4058 PF03946 Ribosomal protein L11, N-terminal domain XBJ1_4059 PF02357 Transcription termination factor nusG XBJ1_4059 PF00467 KOW motif XBJ1_4060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XBJ1_4062 PF00009 Elongation factor Tu GTP binding domain XBJ1_4062 PF03143 Elongation factor Tu C-terminal domain XBJ1_4062 PF03144 Elongation factor Tu domain 2 XBJ1_4063 PF00679 Elongation factor G C-terminus XBJ1_4063 PF03144 Elongation factor Tu domain 2 XBJ1_4063 PF00009 Elongation factor Tu GTP binding domain XBJ1_4063 PF14492 Elongation Factor G, domain II XBJ1_4063 PF03764 Elongation factor G, domain IV XBJ1_4064 PF00177 Ribosomal protein S7p/S5e XBJ1_4065 PF00164 Ribosomal protein S12/S23 XBJ1_4066 PF04077 DsrH like protein XBJ1_4067 PF02635 DsrE/DsrF-like family XBJ1_4068 PF02635 DsrE/DsrF-like family XBJ1_4069 PF13309 HTH domain XBJ1_4069 PF08348 YheO-like PAS domain XBJ1_4070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XBJ1_4070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XBJ1_4071 PF04102 SlyX XBJ1_4072 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XBJ1_4074 PF09526 Probable metal-binding protein (DUF2387) XBJ1_4075 PF00999 Sodium/hydrogen exchanger family XBJ1_4075 PF02254 TrkA-N domain XBJ1_4076 PF02525 Flavodoxin-like fold XBJ1_4077 PF12848 ABC transporter XBJ1_4077 PF00005 ABC transporter XBJ1_4080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_4080 PF03466 LysR substrate binding domain XBJ1_4082 PF03400 IS1 transposase XBJ1_4084 PF13580 SIS domain XBJ1_4085 PF00367 phosphotransferase system, EIIB XBJ1_4085 PF02378 Phosphotransferase system, EIIC XBJ1_4087 PF06794 Uncharacterised protein family (UPF0270) XBJ1_4088 PF00485 Phosphoribulokinase / Uridine kinase family XBJ1_4089 PF00027 Cyclic nucleotide-binding domain XBJ1_4089 PF13545 Crp-like helix-turn-helix domain XBJ1_4090 PF00117 Glutamine amidotransferase class-I XBJ1_4092 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XBJ1_4093 PF01926 50S ribosome-binding GTPase XBJ1_4095 PF01548 Transposase XBJ1_4095 PF02371 Transposase IS116/IS110/IS902 family XBJ1_4096 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XBJ1_4096 PF01612 3'-5' exonuclease XBJ1_4096 PF00476 DNA polymerase family A XBJ1_4096 PF01367 5'-3' exonuclease, C-terminal SAM fold XBJ1_4097 PF01323 DSBA-like thioredoxin domain XBJ1_4098 PF01636 Phosphotransferase enzyme family XBJ1_4099 PF12804 MobA-like NTP transferase domain XBJ1_4100 PF03205 Molybdopterin guanine dinucleotide synthesis protein B XBJ1_4103 PF03992 Antibiotic biosynthesis monooxygenase XBJ1_4104 PF01791 DeoC/LacD family aldolase XBJ1_4105 PF13407 Periplasmic binding protein domain XBJ1_4108 PF04198 Putative sugar-binding domain XBJ1_4108 PF00325 Bacterial regulatory proteins, crp family XBJ1_4109 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XBJ1_4109 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XBJ1_4110 PF07804 HipA-like C-terminal domain XBJ1_4111 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_4111 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XBJ1_4112 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XBJ1_4114 PF13693 Winged helix-turn-helix DNA-binding XBJ1_4116 PF03406 Phage tail fibre repeat XBJ1_4119 PF03811 InsA N-terminal domain XBJ1_4119 PF12759 InsA C-terminal domain XBJ1_4120 PF03400 IS1 transposase XBJ1_4121 PF02627 Carboxymuconolactone decarboxylase family XBJ1_4122 PF00155 Aminotransferase class I and II XBJ1_4122 PF00392 Bacterial regulatory proteins, gntR family XBJ1_4125 PF01548 Transposase XBJ1_4125 PF02371 Transposase IS116/IS110/IS902 family XBJ1_4127 PF00392 Bacterial regulatory proteins, gntR family XBJ1_4129 PF12794 Mechanosensitive ion channel inner membrane domain 1 XBJ1_4129 PF12795 Mechanosensitive ion channel porin domain XBJ1_4129 PF00924 Mechanosensitive ion channel XBJ1_4130 PF02666 Phosphatidylserine decarboxylase XBJ1_4131 PF03193 RsgA GTPase XBJ1_4132 PF00929 Exonuclease XBJ1_4141 PF05656 Protein of unknown function (DUF805) XBJ1_4143 PF12146 Serine aminopeptidase, S33 XBJ1_4144 PF09382 RQC domain XBJ1_4144 PF16124 RecQ zinc-binding XBJ1_4144 PF00570 HRDC domain XBJ1_4144 PF00271 Helicase conserved C-terminal domain XBJ1_4144 PF00270 DEAD/DEAH box helicase XBJ1_4146 PF03061 Thioesterase superfamily XBJ1_4149 PF00892 EamA-like transporter family XBJ1_4150 PF01544 CorA-like Mg2+ transporter protein XBJ1_4151 PF13361 UvrD-like helicase C-terminal domain XBJ1_4151 PF00580 UvrD/REP helicase N-terminal domain XBJ1_4152 PF13419 Haloacid dehalogenase-like hydrolase XBJ1_4153 PF02899 Phage integrase, N-terminal SAM-like domain XBJ1_4153 PF00589 Phage integrase family XBJ1_4154 PF04340 Protein of unknown function, DUF484 XBJ1_4155 PF01678 Diaminopimelate epimerase XBJ1_4156 PF13627 Prokaryotic lipoprotein-attachment site XBJ1_4157 PF01491 Frataxin-like domain XBJ1_4158 PF01295 Adenylate cyclase, class-I XBJ1_4158 PF12633 Adenylate cyclase NT domain XBJ1_4160 PF03900 Porphobilinogen deaminase, C-terminal domain XBJ1_4160 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XBJ1_4161 PF02602 Uroporphyrinogen-III synthase HemD XBJ1_4162 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase XBJ1_4163 PF07719 Tetratricopeptide repeat XBJ1_4163 PF07219 HemY protein N-terminus XBJ1_4166 PF00324 Amino acid permease XBJ1_4167 PF03808 Glycosyl transferase WecB/TagA/CpsF family XBJ1_4168 PF06899 WzyE protein, O-antigen assembly polymerase XBJ1_4169 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 XBJ1_4170 PF01943 Polysaccharide biosynthesis protein XBJ1_4171 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XBJ1_4173 PF00483 Nucleotidyl transferase XBJ1_4174 PF16363 GDP-mannose 4,6 dehydratase XBJ1_4175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XBJ1_4175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XBJ1_4175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XBJ1_4176 PF02350 UDP-N-acetylglucosamine 2-epimerase XBJ1_4177 PF02706 Chain length determinant protein XBJ1_4178 PF00953 Glycosyl transferase family 4 XBJ1_4179 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XBJ1_4179 PF07498 Rho termination factor, N-terminal domain XBJ1_4179 PF07497 Rho termination factor, RNA-binding domain XBJ1_4182 PF00085 Thioredoxin XBJ1_4184 PF00270 DEAD/DEAH box helicase XBJ1_4184 PF00271 Helicase conserved C-terminal domain XBJ1_4185 PF02541 Ppx/GppA phosphatase family XBJ1_4186 PF00580 UvrD/REP helicase N-terminal domain XBJ1_4186 PF13361 UvrD-like helicase C-terminal domain XBJ1_4188 PF00850 Histone deacetylase domain XBJ1_4189 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XBJ1_4189 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XBJ1_4190 PF03466 LysR substrate binding domain XBJ1_4190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_4191 PF00291 Pyridoxal-phosphate dependent enzyme XBJ1_4191 PF00585 C-terminal regulatory domain of Threonine dehydratase XBJ1_4192 PF00920 Dehydratase family XBJ1_4193 PF01063 Amino-transferase class IV XBJ1_4195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XBJ1_4195 PF00205 Thiamine pyrophosphate enzyme, central domain XBJ1_4195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XBJ1_4196 PF01078 Magnesium chelatase, subunit ChlI XBJ1_4196 PF13335 Magnesium chelatase, subunit ChlI C-terminal XBJ1_4197 PF04219 Protein of unknown function, DUF XBJ1_4198 PF03466 LysR substrate binding domain XBJ1_4198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_4204 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_4205 PF07369 Protein of unknown function (DUF1488) XBJ1_4206 PF08501 Shikimate dehydrogenase substrate binding domain XBJ1_4206 PF01488 Shikimate / quinate 5-dehydrogenase XBJ1_4206 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XBJ1_4207 PF01300 Telomere recombination XBJ1_4208 PF01396 Topoisomerase DNA binding C4 zinc finger XBJ1_4209 PF17782 DprA winged helix domain XBJ1_4209 PF02481 DNA recombination-mediator protein A XBJ1_4210 PF01327 Polypeptide deformylase XBJ1_4211 PF02911 Formyl transferase, C-terminal domain XBJ1_4211 PF00551 Formyl transferase XBJ1_4212 PF01029 NusB family XBJ1_4212 PF01189 16S rRNA methyltransferase RsmB/F XBJ1_4213 PF02254 TrkA-N domain XBJ1_4213 PF02080 TrkA-C domain XBJ1_4214 PF03889 Alternative ribosome-rescue factor A XBJ1_4215 PF13411 MerR HTH family regulatory protein XBJ1_4216 PF01196 Ribosomal protein L17 XBJ1_4217 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XBJ1_4217 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XBJ1_4217 PF01000 RNA polymerase Rpb3/RpoA insert domain XBJ1_4218 PF00163 Ribosomal protein S4/S9 N-terminal domain XBJ1_4218 PF01479 S4 domain XBJ1_4219 PF00411 Ribosomal protein S11 XBJ1_4220 PF00416 Ribosomal protein S13/S18 XBJ1_4221 PF00344 SecY translocase XBJ1_4222 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XBJ1_4223 PF00327 Ribosomal protein L30p/L7e XBJ1_4224 PF00333 Ribosomal protein S5, N-terminal domain XBJ1_4224 PF03719 Ribosomal protein S5, C-terminal domain XBJ1_4225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XBJ1_4226 PF00347 Ribosomal protein L6 XBJ1_4227 PF00410 Ribosomal protein S8 XBJ1_4228 PF00253 Ribosomal protein S14p/S29e XBJ1_4229 PF00281 Ribosomal protein L5 XBJ1_4229 PF00673 ribosomal L5P family C-terminus XBJ1_4230 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XBJ1_4231 PF00238 Ribosomal protein L14p/L23e XBJ1_4232 PF00366 Ribosomal protein S17 XBJ1_4233 PF00831 Ribosomal L29 protein XBJ1_4234 PF00252 Ribosomal protein L16p/L10e XBJ1_4235 PF00189 Ribosomal protein S3, C-terminal domain XBJ1_4235 PF07650 KH domain XBJ1_4236 PF00237 Ribosomal protein L22p/L17e XBJ1_4237 PF00203 Ribosomal protein S19 XBJ1_4238 PF00181 Ribosomal Proteins L2, RNA binding domain XBJ1_4238 PF03947 Ribosomal Proteins L2, C-terminal domain XBJ1_4239 PF00276 Ribosomal protein L23 XBJ1_4240 PF00573 Ribosomal protein L4/L1 family XBJ1_4241 PF00297 Ribosomal protein L3 XBJ1_4242 PF00338 Ribosomal protein S10p/S20e XBJ1_4243 PF00210 Ferritin-like domain XBJ1_4244 PF04324 BFD-like [2Fe-2S] binding domain XBJ1_4246 PF01548 Transposase XBJ1_4246 PF02371 Transposase IS116/IS110/IS902 family XBJ1_4247 PF03143 Elongation factor Tu C-terminal domain XBJ1_4247 PF03144 Elongation factor Tu domain 2 XBJ1_4247 PF00009 Elongation factor Tu GTP binding domain XBJ1_4251 PF00485 Phosphoribulokinase / Uridine kinase family XBJ1_4252 PF02237 Biotin protein ligase C terminal domain XBJ1_4252 PF03099 Biotin/lipoate A/B protein ligase family XBJ1_4252 PF08279 HTH domain XBJ1_4253 PF01565 FAD binding domain XBJ1_4253 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XBJ1_4259 PF01177 Asp/Glu/Hydantoin racemase XBJ1_4260 PF00593 TonB dependent receptor XBJ1_4260 PF07715 TonB-dependent Receptor Plug Domain XBJ1_4262 PF05958 tRNA (Uracil-5-)-methyltransferase XBJ1_4263 PF07226 Protein of unknown function (DUF1422) XBJ1_4264 PF00440 Bacterial regulatory proteins, tetR family XBJ1_4265 PF07992 Pyridine nucleotide-disulphide oxidoreductase XBJ1_4265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XBJ1_4266 PF03466 LysR substrate binding domain XBJ1_4266 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XBJ1_4268 PF00206 Lyase XBJ1_4268 PF14698 Argininosuccinate lyase C-terminal XBJ1_4269 PF00764 Arginosuccinate synthase XBJ1_4270 PF00696 Amino acid kinase family XBJ1_4271 PF02774 Semialdehyde dehydrogenase, dimerisation domain XBJ1_4271 PF01118 Semialdehyde dehydrogenase, NAD binding domain XBJ1_4272 PF07687 Peptidase dimerisation domain XBJ1_4272 PF01546 Peptidase family M20/M25/M40 XBJ1_4273 PF02219 Methylenetetrahydrofolate reductase XBJ1_4275 PF00311 Phosphoenolpyruvate carboxylase XBJ1_4276 PF03447 Homoserine dehydrogenase, NAD binding domain XBJ1_4276 PF00696 Amino acid kinase family XBJ1_4276 PF00742 Homoserine dehydrogenase XBJ1_4277 PF01053 Cys/Met metabolism PLP-dependent enzyme XBJ1_4278 PF01340 Met Apo-repressor, MetJ XBJ1_4279 PF01197 Ribosomal protein L31 XBJ1_4280 PF00271 Helicase conserved C-terminal domain XBJ1_4280 PF17764 3′ DNA-binding domain (3′BD) XBJ1_4280 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XBJ1_4280 PF18074 Primosomal protein N C-terminal domain XBJ1_4280 PF00270 DEAD/DEAH box helicase XBJ1_4282 PF00356 Bacterial regulatory proteins, lacI family XBJ1_4283 PF05036 Sporulation related domain XBJ1_4284 PF00227 Proteasome subunit XBJ1_4285 PF10431 C-terminal, D2-small domain, of ClpB protein XBJ1_4285 PF07724 AAA domain (Cdc48 subfamily) XBJ1_4285 PF00004 ATPase family associated with various cellular activities (AAA) XBJ1_4286 PF01040 UbiA prenyltransferase family XBJ1_4287 PF03737 Aldolase/RraA XBJ1_4288 PF06005 Cell division protein ZapB XBJ1_4290 PF00230 Major intrinsic protein XBJ1_4291 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XBJ1_4291 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XBJ1_4292 PF07690 Major Facilitator Superfamily XBJ1_4293 PF00970 Oxidoreductase FAD-binding domain XBJ1_4293 PF00175 Oxidoreductase NAD-binding domain XBJ1_4294 PF05656 Protein of unknown function (DUF805) XBJ1_4295 PF07305 Protein of unknown function (DUF1454) XBJ1_4297 PF00121 Triosephosphate isomerase XBJ1_4299 PF01548 Transposase XBJ1_4299 PF02371 Transposase IS116/IS110/IS902 family XBJ1_4302 PF00365 Phosphofructokinase XBJ1_4303 PF16916 Dimerisation domain of Zinc Transporter XBJ1_4303 PF01545 Cation efflux family XBJ1_4306 PF03400 IS1 transposase XBJ1_4307 PF03811 InsA N-terminal domain XBJ1_4307 PF12759 InsA C-terminal domain XBJ1_4310 PF07813 LTXXQ motif family protein XBJ1_4311 PF00072 Response regulator receiver domain XBJ1_4311 PF00486 Transcriptional regulatory protein, C terminal XBJ1_4312 PF00512 His Kinase A (phospho-acceptor) domain XBJ1_4312 PF16527 Two-component sensor protein CpxA, periplasmic domain XBJ1_4312 PF00672 HAMP domain XBJ1_4312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XBJ1_4313 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XBJ1_4313 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XBJ1_4313 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XBJ1_4314 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XBJ1_4314 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XBJ1_4315 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_4316 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XBJ1_4327 PF00535 Glycosyl transferase family 2 XBJ1_4328 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XBJ1_4328 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XBJ1_4328 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XBJ1_4329 PF00588 SpoU rRNA Methylase family XBJ1_4330 PF00132 Bacterial transferase hexapeptide (six repeats) XBJ1_4330 PF06426 Serine acetyltransferase, N-terminal XBJ1_4331 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XBJ1_4331 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XBJ1_4332 PF02556 Preprotein translocase subunit SecB XBJ1_4333 PF00581 Rhodanese-like domain XBJ1_4334 PF01551 Peptidase family M23 XBJ1_4335 PF04748 Divergent polysaccharide deacetylase XBJ1_4336 PF08240 Alcohol dehydrogenase GroES-like domain XBJ1_4336 PF00107 Zinc-binding dehydrogenase XBJ1_4337 PF00155 Aminotransferase class I and II XBJ1_4338 PF01370 NAD dependent epimerase/dehydratase family XBJ1_4339 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XBJ1_4340 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XBJ1_4343 PF00535 Glycosyl transferase family 2 XBJ1_4344 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 XBJ1_4344 PF00535 Glycosyl transferase family 2 XBJ1_4346 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XBJ1_4347 PF00534 Glycosyl transferases group 1 XBJ1_4347 PF13439 Glycosyltransferase Family 4 XBJ1_4348 PF00534 Glycosyl transferases group 1 XBJ1_4348 PF13439 Glycosyltransferase Family 4 XBJ1_4349 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XBJ1_4350 PF00535 Glycosyl transferase family 2 XBJ1_4351 PF01467 Cytidylyltransferase-like XBJ1_4352 PF06827 Zinc finger found in FPG and IleRS XBJ1_4352 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XBJ1_4352 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XBJ1_4353 PF04932 O-Antigen ligase XBJ1_4355 PF13439 Glycosyltransferase Family 4 XBJ1_4355 PF00534 Glycosyl transferases group 1 XBJ1_4357 PF00534 Glycosyl transferases group 1 XBJ1_4358 PF00471 Ribosomal protein L33 XBJ1_4359 PF00830 Ribosomal L28 family XBJ1_4361 PF04002 RadC-like JAB domain XBJ1_4362 PF02441 Flavoprotein XBJ1_4362 PF04127 DNA / pantothenate metabolism flavoprotein XBJ1_4363 PF00692 dUTPase XBJ1_4364 PF00440 Bacterial regulatory proteins, tetR family XBJ1_4365 PF00156 Phosphoribosyl transferase domain XBJ1_4366 PF01138 3' exoribonuclease family, domain 1 XBJ1_4366 PF03725 3' exoribonuclease family, domain 2 XBJ1_4367 PF03755 YicC-like family, N-terminal region XBJ1_4367 PF08340 Domain of unknown function (DUF1732) XBJ1_4379 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XBJ1_4384 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XBJ1_4385 PF07690 Major Facilitator Superfamily XBJ1_4387 PF00294 pfkB family carbohydrate kinase XBJ1_4389 PF00392 Bacterial regulatory proteins, gntR family XBJ1_4389 PF07702 UTRA domain XBJ1_4390 PF00884 Sulfatase XBJ1_4391 PF04216 Protein involved in formate dehydrogenase formation XBJ1_4401 PF01051 Initiator Replication protein XBJ1_4402 PF02634 FdhD/NarQ family XBJ1_4408 PF03544 Gram-negative bacterial TonB protein C-terminal XBJ1_4409 PF01926 50S ribosome-binding GTPase XBJ1_4409 PF12631 MnmE helical domain XBJ1_4409 PF10396 GTP-binding protein TrmE N-terminus XBJ1_4410 PF14849 YidC periplasmic domain XBJ1_4410 PF02096 60Kd inner membrane protein XBJ1_4411 PF01809 Putative membrane protein insertion efficiency factor XBJ1_4412 PF00825 Ribonuclease P XBJ1_4413 PF00468 Ribosomal protein L34