locus-tag class description XDD1_0001 PF11638 DnaA N-terminal domain XDD1_0001 PF08299 Bacterial dnaA protein helix-turn-helix XDD1_0001 PF00308 Bacterial dnaA protein XDD1_0002 PF02767 DNA polymerase III beta subunit, central domain XDD1_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XDD1_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XDD1_0003 PF02463 RecF/RecN/SMC N terminal domain XDD1_0004 PF01751 Toprim domain XDD1_0004 PF00986 DNA gyrase B subunit, carboxyl terminus XDD1_0004 PF00204 DNA gyrase B XDD1_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_0004 PF18053 DNA gyrase B subunit insert domain XDD1_0009 PF02774 Semialdehyde dehydrogenase, dimerisation domain XDD1_0009 PF01118 Semialdehyde dehydrogenase, NAD binding domain XDD1_0013 PF05496 Holliday junction DNA helicase RuvB P-loop domain XDD1_0013 PF17864 RuvB AAA lid domain XDD1_0013 PF05491 RuvB C-terminal winged helix domain XDD1_0015 PF00743 Flavin-binding monooxygenase-like XDD1_0028 PF13358 DDE superfamily endonuclease XDD1_0030 PF01380 SIS domain XDD1_0031 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_0031 PF12804 MobA-like NTP transferase domain XDD1_0033 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XDD1_0033 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XDD1_0034 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XDD1_0034 PF02874 ATP synthase alpha/beta family, beta-barrel domain XDD1_0035 PF00231 ATP synthase XDD1_0036 PF00306 ATP synthase alpha/beta chain, C terminal domain XDD1_0036 PF02874 ATP synthase alpha/beta family, beta-barrel domain XDD1_0036 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XDD1_0037 PF00213 ATP synthase delta (OSCP) subunit XDD1_0038 PF00430 ATP synthase B/B' CF(0) XDD1_0039 PF00137 ATP synthase subunit C XDD1_0040 PF00119 ATP synthase A chain XDD1_0041 PF03899 ATP synthase I chain XDD1_0042 PF02527 rRNA small subunit methyltransferase G XDD1_0043 PF13932 GidA associated domain XDD1_0043 PF01134 Glucose inhibited division protein A XDD1_0044 PF00258 Flavodoxin XDD1_0045 PF01037 Lrp/AsnC ligand binding domain XDD1_0046 PF03590 Aspartate-ammonia ligase XDD1_0047 PF05762 VWA domain containing CoxE-like protein XDD1_0048 PF12592 Protein of unknown function (DUF3763) XDD1_0048 PF17868 AAA lid domain XDD1_0048 PF07728 AAA domain (dynein-related subfamily) XDD1_0049 PF00005 ABC transporter XDD1_0050 PF02653 Branched-chain amino acid transport system / permease component XDD1_0051 PF13407 Periplasmic binding protein domain XDD1_0052 PF00294 pfkB family carbohydrate kinase XDD1_0053 PF00356 Bacterial regulatory proteins, lacI family XDD1_0054 PF07690 Major Facilitator Superfamily XDD1_0058 PF00474 Sodium:solute symporter family XDD1_0059 PF04341 Protein of unknown function, DUF485 XDD1_0061 PF13193 AMP-binding enzyme C-terminal domain XDD1_0061 PF00501 AMP-binding enzyme XDD1_0061 PF16177 Acetyl-coenzyme A synthetase N-terminus XDD1_0062 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XDD1_0062 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XDD1_0064 PF03475 3-alpha domain XDD1_0064 PF03473 MOSC domain XDD1_0065 PF00579 tRNA synthetases class I (W and Y) XDD1_0066 PF13419 Haloacid dehalogenase-like hydrolase XDD1_0067 PF00834 Ribulose-phosphate 3 epimerase family XDD1_0068 PF02086 D12 class N6 adenine-specific DNA methyltransferase XDD1_0069 PF05036 Sporulation related domain XDD1_0070 PF01761 3-dehydroquinate synthase XDD1_0071 PF01202 Shikimate kinase XDD1_0072 PF00263 Bacterial type II and III secretion system protein XDD1_0072 PF03958 Bacterial type II/III secretion system short domain XDD1_0076 PF17092 Penicillin-binding protein OB-like domain XDD1_0076 PF00912 Transglycosylase XDD1_0076 PF00905 Penicillin binding protein transpeptidase domain XDD1_0077 PF00293 NUDIX domain XDD1_0078 PF07095 Intracellular growth attenuator protein IgaA XDD1_0079 PF01479 S4 domain XDD1_0080 PF01430 Hsp33 protein XDD1_0081 PF01293 Phosphoenolpyruvate carboxykinase XDD1_0082 PF07690 Major Facilitator Superfamily XDD1_0085 PF14535 AMP-binding enzyme C-terminal domain XDD1_0085 PF00501 AMP-binding enzyme XDD1_0087 PF07690 Major Facilitator Superfamily XDD1_0089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0089 PF03466 LysR substrate binding domain XDD1_0091 PF01384 Phosphate transporter family XDD1_0092 PF10625 Universal stress protein B (UspB) XDD1_0094 PF00582 Universal stress protein family XDD1_0096 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XDD1_0096 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XDD1_0097 PF04445 Putative SAM-dependent methyltransferase XDD1_0098 PF01432 Peptidase family M3 XDD1_0100 PF03129 Anticodon binding domain XDD1_0100 PF02824 TGS domain XDD1_0100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XDD1_0100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_0104 PF11941 Domain of unknown function (DUF3459) XDD1_0104 PF00128 Alpha amylase, catalytic domain XDD1_0105 PF00367 phosphotransferase system, EIIB XDD1_0105 PF02378 Phosphotransferase system, EIIC XDD1_0107 PF07848 PaaX-like protein XDD1_0107 PF08223 PaaX-like protein C-terminal domain XDD1_0108 PF03466 LysR substrate binding domain XDD1_0108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0109 PF13358 DDE superfamily endonuclease XDD1_0112 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XDD1_0113 PF08340 Domain of unknown function (DUF1732) XDD1_0113 PF03755 YicC-like family, N-terminal region XDD1_0115 PF01138 3' exoribonuclease family, domain 1 XDD1_0115 PF03725 3' exoribonuclease family, domain 2 XDD1_0116 PF00156 Phosphoribosyl transferase domain XDD1_0118 PF00440 Bacterial regulatory proteins, tetR family XDD1_0119 PF00692 dUTPase XDD1_0120 PF02441 Flavoprotein XDD1_0120 PF04127 DNA / pantothenate metabolism flavoprotein XDD1_0122 PF04002 RadC-like JAB domain XDD1_0124 PF00830 Ribosomal L28 family XDD1_0125 PF00471 Ribosomal protein L33 XDD1_0127 PF00534 Glycosyl transferases group 1 XDD1_0129 PF13439 Glycosyltransferase Family 4 XDD1_0129 PF00534 Glycosyl transferases group 1 XDD1_0131 PF04932 O-Antigen ligase XDD1_0132 PF06827 Zinc finger found in FPG and IleRS XDD1_0132 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XDD1_0132 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XDD1_0133 PF01467 Cytidylyltransferase-like XDD1_0134 PF00535 Glycosyl transferase family 2 XDD1_0135 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XDD1_0136 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XDD1_0137 PF13439 Glycosyltransferase Family 4 XDD1_0137 PF00534 Glycosyl transferases group 1 XDD1_0138 PF00534 Glycosyl transferases group 1 XDD1_0138 PF13439 Glycosyltransferase Family 4 XDD1_0140 PF00535 Glycosyl transferase family 2 XDD1_0141 PF00535 Glycosyl transferase family 2 XDD1_0144 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XDD1_0145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XDD1_0146 PF01370 NAD dependent epimerase/dehydratase family XDD1_0147 PF00155 Aminotransferase class I and II XDD1_0148 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_0148 PF00107 Zinc-binding dehydrogenase XDD1_0149 PF04748 Divergent polysaccharide deacetylase XDD1_0150 PF01551 Peptidase family M23 XDD1_0155 PF00581 Rhodanese-like domain XDD1_0156 PF02556 Preprotein translocase subunit SecB XDD1_0157 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XDD1_0157 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XDD1_0158 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_0158 PF06426 Serine acetyltransferase, N-terminal XDD1_0159 PF00588 SpoU rRNA Methylase family XDD1_0162 PF02350 UDP-N-acetylglucosamine 2-epimerase XDD1_0164 PF08485 Polysaccharide biosynthesis protein C-terminal XDD1_0164 PF02719 Polysaccharide biosynthesis protein XDD1_0165 PF00534 Glycosyl transferases group 1 XDD1_0166 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XDD1_0166 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XDD1_0166 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XDD1_0166 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XDD1_0167 PF01050 Mannose-6-phosphate isomerase XDD1_0167 PF00483 Nucleotidyl transferase XDD1_0171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_0171 PF00512 His Kinase A (phospho-acceptor) domain XDD1_0171 PF16527 Two-component sensor protein CpxA, periplasmic domain XDD1_0171 PF00672 HAMP domain XDD1_0172 PF00486 Transcriptional regulatory protein, C terminal XDD1_0172 PF00072 Response regulator receiver domain XDD1_0173 PF07813 LTXXQ motif family protein XDD1_0181 PF01545 Cation efflux family XDD1_0181 PF16916 Dimerisation domain of Zinc Transporter XDD1_0182 PF00365 Phosphofructokinase XDD1_0184 PF00121 Triosephosphate isomerase XDD1_0185 PF07305 Protein of unknown function (DUF1454) XDD1_0187 PF05656 Protein of unknown function (DUF805) XDD1_0188 PF00970 Oxidoreductase FAD-binding domain XDD1_0188 PF00175 Oxidoreductase NAD-binding domain XDD1_0189 PF07690 Major Facilitator Superfamily XDD1_0190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XDD1_0190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XDD1_0191 PF00230 Major intrinsic protein XDD1_0192 PF06005 Cell division protein ZapB XDD1_0193 PF03737 Aldolase/RraA XDD1_0194 PF01040 UbiA prenyltransferase family XDD1_0195 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_0195 PF07724 AAA domain (Cdc48 subfamily) XDD1_0195 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_0196 PF00227 Proteasome subunit XDD1_0197 PF05036 Sporulation related domain XDD1_0198 PF00356 Bacterial regulatory proteins, lacI family XDD1_0199 PF18074 Primosomal protein N C-terminal domain XDD1_0199 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XDD1_0199 PF17764 3′ DNA-binding domain (3′BD) XDD1_0199 PF00271 Helicase conserved C-terminal domain XDD1_0199 PF00270 DEAD/DEAH box helicase XDD1_0200 PF01197 Ribosomal protein L31 XDD1_0201 PF01340 Met Apo-repressor, MetJ XDD1_0202 PF01053 Cys/Met metabolism PLP-dependent enzyme XDD1_0203 PF00696 Amino acid kinase family XDD1_0203 PF03447 Homoserine dehydrogenase, NAD binding domain XDD1_0203 PF00742 Homoserine dehydrogenase XDD1_0204 PF00311 Phosphoenolpyruvate carboxylase XDD1_0205 PF03466 LysR substrate binding domain XDD1_0205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0206 PF07690 Major Facilitator Superfamily XDD1_0209 PF07690 Major Facilitator Superfamily XDD1_0210 PF02219 Methylenetetrahydrofolate reductase XDD1_0211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0211 PF03466 LysR substrate binding domain XDD1_0213 PF13358 DDE superfamily endonuclease XDD1_0213 PF13592 Winged helix-turn helix XDD1_0215 PF07687 Peptidase dimerisation domain XDD1_0215 PF01546 Peptidase family M20/M25/M40 XDD1_0216 PF01118 Semialdehyde dehydrogenase, NAD binding domain XDD1_0216 PF02774 Semialdehyde dehydrogenase, dimerisation domain XDD1_0217 PF00696 Amino acid kinase family XDD1_0218 PF00764 Arginosuccinate synthase XDD1_0219 PF00206 Lyase XDD1_0219 PF14698 Argininosuccinate lyase C-terminal XDD1_0221 PF13358 DDE superfamily endonuclease XDD1_0222 PF13276 HTH-like domain XDD1_0222 PF00665 Integrase core domain XDD1_0222 PF13333 Integrase core domain XDD1_0229 PF02371 Transposase IS116/IS110/IS902 family XDD1_0229 PF01548 Transposase XDD1_0238 PF04073 Aminoacyl-tRNA editing domain XDD1_0238 PF03129 Anticodon binding domain XDD1_0238 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XDD1_0241 PF13358 DDE superfamily endonuclease XDD1_0249 PF01548 Transposase XDD1_0249 PF02371 Transposase IS116/IS110/IS902 family XDD1_0257 PF13333 Integrase core domain XDD1_0257 PF00665 Integrase core domain XDD1_0257 PF13276 HTH-like domain XDD1_0258 PF13358 DDE superfamily endonuclease XDD1_0259 PF03466 LysR substrate binding domain XDD1_0259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0260 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_0260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XDD1_0261 PF00440 Bacterial regulatory proteins, tetR family XDD1_0262 PF07226 Protein of unknown function (DUF1422) XDD1_0263 PF05958 tRNA (Uracil-5-)-methyltransferase XDD1_0264 PF01177 Asp/Glu/Hydantoin racemase XDD1_0272 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XDD1_0272 PF01565 FAD binding domain XDD1_0273 PF02237 Biotin protein ligase C terminal domain XDD1_0273 PF03099 Biotin/lipoate A/B protein ligase family XDD1_0273 PF08279 HTH domain XDD1_0274 PF00485 Phosphoribulokinase / Uridine kinase family XDD1_0277 PF00009 Elongation factor Tu GTP binding domain XDD1_0277 PF03143 Elongation factor Tu C-terminal domain XDD1_0277 PF03144 Elongation factor Tu domain 2 XDD1_0278 PF00210 Ferritin-like domain XDD1_0279 PF00338 Ribosomal protein S10p/S20e XDD1_0280 PF00297 Ribosomal protein L3 XDD1_0281 PF00573 Ribosomal protein L4/L1 family XDD1_0282 PF00276 Ribosomal protein L23 XDD1_0283 PF00181 Ribosomal Proteins L2, RNA binding domain XDD1_0283 PF03947 Ribosomal Proteins L2, C-terminal domain XDD1_0284 PF00203 Ribosomal protein S19 XDD1_0285 PF00237 Ribosomal protein L22p/L17e XDD1_0286 PF00189 Ribosomal protein S3, C-terminal domain XDD1_0286 PF07650 KH domain XDD1_0287 PF00252 Ribosomal protein L16p/L10e XDD1_0288 PF00831 Ribosomal L29 protein XDD1_0289 PF00366 Ribosomal protein S17 XDD1_0290 PF00238 Ribosomal protein L14p/L23e XDD1_0291 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XDD1_0291 PF00467 KOW motif XDD1_0292 PF00281 Ribosomal protein L5 XDD1_0292 PF00673 ribosomal L5P family C-terminus XDD1_0293 PF00253 Ribosomal protein S14p/S29e XDD1_0294 PF00410 Ribosomal protein S8 XDD1_0295 PF00347 Ribosomal protein L6 XDD1_0296 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XDD1_0297 PF00333 Ribosomal protein S5, N-terminal domain XDD1_0297 PF03719 Ribosomal protein S5, C-terminal domain XDD1_0298 PF00327 Ribosomal protein L30p/L7e XDD1_0299 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XDD1_0300 PF00344 SecY translocase XDD1_0301 PF00444 Ribosomal protein L36 XDD1_0302 PF00416 Ribosomal protein S13/S18 XDD1_0303 PF00411 Ribosomal protein S11 XDD1_0304 PF01479 S4 domain XDD1_0304 PF00163 Ribosomal protein S4/S9 N-terminal domain XDD1_0305 PF01000 RNA polymerase Rpb3/RpoA insert domain XDD1_0305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XDD1_0305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XDD1_0306 PF01196 Ribosomal protein L17 XDD1_0307 PF13411 MerR HTH family regulatory protein XDD1_0308 PF03889 Alternative ribosome-rescue factor A XDD1_0309 PF02254 TrkA-N domain XDD1_0309 PF02080 TrkA-C domain XDD1_0310 PF01029 NusB family XDD1_0310 PF01189 16S rRNA methyltransferase RsmB/F XDD1_0311 PF02911 Formyl transferase, C-terminal domain XDD1_0311 PF00551 Formyl transferase XDD1_0312 PF01327 Polypeptide deformylase XDD1_0314 PF02481 DNA recombination-mediator protein A XDD1_0314 PF17782 DprA winged helix domain XDD1_0315 PF01396 Topoisomerase DNA binding C4 zinc finger XDD1_0316 PF01300 Telomere recombination XDD1_0317 PF08501 Shikimate dehydrogenase substrate binding domain XDD1_0317 PF01488 Shikimate / quinate 5-dehydrogenase XDD1_0317 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XDD1_0318 PF07369 Protein of unknown function (DUF1488) XDD1_0319 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_0326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0326 PF03466 LysR substrate binding domain XDD1_0327 PF04219 Protein of unknown function, DUF XDD1_0328 PF01078 Magnesium chelatase, subunit ChlI XDD1_0328 PF13335 Magnesium chelatase, subunit ChlI C-terminal XDD1_0329 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XDD1_0329 PF00205 Thiamine pyrophosphate enzyme, central domain XDD1_0329 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XDD1_0331 PF01063 Amino-transferase class IV XDD1_0332 PF00920 Dehydratase family XDD1_0333 PF00585 C-terminal regulatory domain of Threonine dehydratase XDD1_0333 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_0334 PF07690 Major Facilitator Superfamily XDD1_0335 PF00529 HlyD membrane-fusion protein of T1SS XDD1_0335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_0337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0337 PF03466 LysR substrate binding domain XDD1_0338 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XDD1_0338 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XDD1_0339 PF00850 Histone deacetylase domain XDD1_0340 PF13361 UvrD-like helicase C-terminal domain XDD1_0340 PF00580 UvrD/REP helicase N-terminal domain XDD1_0341 PF02541 Ppx/GppA phosphatase family XDD1_0342 PF00270 DEAD/DEAH box helicase XDD1_0342 PF00271 Helicase conserved C-terminal domain XDD1_0343 PF00085 Thioredoxin XDD1_0345 PF07498 Rho termination factor, N-terminal domain XDD1_0345 PF07497 Rho termination factor, RNA-binding domain XDD1_0345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XDD1_0346 PF00953 Glycosyl transferase family 4 XDD1_0347 PF02706 Chain length determinant protein XDD1_0348 PF02350 UDP-N-acetylglucosamine 2-epimerase XDD1_0349 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XDD1_0349 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XDD1_0349 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XDD1_0350 PF16363 GDP-mannose 4,6 dehydratase XDD1_0351 PF00483 Nucleotidyl transferase XDD1_0353 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XDD1_0354 PF01943 Polysaccharide biosynthesis protein XDD1_0355 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 XDD1_0356 PF06899 WzyE protein, O-antigen assembly polymerase XDD1_0357 PF03808 Glycosyl transferase WecB/TagA/CpsF family XDD1_0358 PF00324 Amino acid permease XDD1_0360 PF07219 HemY protein N-terminus XDD1_0360 PF07719 Tetratricopeptide repeat XDD1_0361 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase XDD1_0362 PF02602 Uroporphyrinogen-III synthase HemD XDD1_0363 PF03900 Porphobilinogen deaminase, C-terminal domain XDD1_0363 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XDD1_0365 PF12633 Adenylate cyclase NT domain XDD1_0365 PF01295 Adenylate cyclase, class-I XDD1_0366 PF01491 Frataxin-like domain XDD1_0367 PF13627 Prokaryotic lipoprotein-attachment site XDD1_0368 PF01678 Diaminopimelate epimerase XDD1_0369 PF04340 Protein of unknown function, DUF484 XDD1_0370 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_0370 PF00589 Phage integrase family XDD1_0371 PF13419 Haloacid dehalogenase-like hydrolase XDD1_0372 PF00580 UvrD/REP helicase N-terminal domain XDD1_0372 PF13361 UvrD-like helicase C-terminal domain XDD1_0373 PF01544 CorA-like Mg2+ transporter protein XDD1_0374 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XDD1_0375 PF00892 EamA-like transporter family XDD1_0379 PF03061 Thioesterase superfamily XDD1_0380 PF02253 Phospholipase A1 XDD1_0381 PF00570 HRDC domain XDD1_0381 PF00271 Helicase conserved C-terminal domain XDD1_0381 PF00270 DEAD/DEAH box helicase XDD1_0381 PF16124 RecQ zinc-binding XDD1_0381 PF09382 RQC domain XDD1_0382 PF12146 Serine aminopeptidase, S33 XDD1_0385 PF00083 Sugar (and other) transporter XDD1_0385 PF07690 Major Facilitator Superfamily XDD1_0386 PF00356 Bacterial regulatory proteins, lacI family XDD1_0389 PF05656 Protein of unknown function (DUF805) XDD1_0390 PF02627 Carboxymuconolactone decarboxylase family XDD1_0391 PF00392 Bacterial regulatory proteins, gntR family XDD1_0391 PF00155 Aminotransferase class I and II XDD1_0395 PF07690 Major Facilitator Superfamily XDD1_0396 PF07690 Major Facilitator Superfamily XDD1_0397 PF12795 Mechanosensitive ion channel porin domain XDD1_0397 PF00924 Mechanosensitive ion channel XDD1_0397 PF12794 Mechanosensitive ion channel inner membrane domain 1 XDD1_0398 PF02666 Phosphatidylserine decarboxylase XDD1_0399 PF03193 RsgA GTPase XDD1_0401 PF00929 Exonuclease XDD1_0403 PF07690 Major Facilitator Superfamily XDD1_0405 PF07690 Major Facilitator Superfamily XDD1_0410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0410 PF03466 LysR substrate binding domain XDD1_0411 PF07690 Major Facilitator Superfamily XDD1_0413 PF01212 Beta-eliminating lyase XDD1_0414 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XDD1_0414 PF08028 Acyl-CoA dehydrogenase, C-terminal domain XDD1_0415 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal XDD1_0415 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal XDD1_0416 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XDD1_0417 PF01520 N-acetylmuramoyl-L-alanine amidase XDD1_0418 PF08676 MutL C terminal dimerisation domain XDD1_0418 PF01119 DNA mismatch repair protein, C-terminal domain XDD1_0420 PF17209 Hfq protein XDD1_0422 PF01926 50S ribosome-binding GTPase XDD1_0422 PF13167 GTP-binding GTPase N-terminal XDD1_0422 PF16360 GTP-binding GTPase Middle Region XDD1_0424 PF01145 SPFH domain / Band 7 family XDD1_0424 PF12221 Bacterial membrane protein N terminal XDD1_0425 PF01145 SPFH domain / Band 7 family XDD1_0426 PF00709 Adenylosuccinate synthetase XDD1_0427 PF02082 Transcriptional regulator XDD1_0428 PF08206 Ribonuclease B OB domain XDD1_0428 PF00773 RNB domain XDD1_0428 PF00575 S1 RNA binding domain XDD1_0428 PF17876 Cold shock domain XDD1_0428 PF08461 Ribonuclease R winged-helix domain XDD1_0430 PF00588 SpoU rRNA Methylase family XDD1_0430 PF08032 RNA 2'-O ribose methyltransferase substrate binding XDD1_0431 PF01250 Ribosomal protein S6 XDD1_0432 PF00436 Single-strand binding protein family XDD1_0433 PF01084 Ribosomal protein S18 XDD1_0434 PF01281 Ribosomal protein L9, N-terminal domain XDD1_0434 PF03948 Ribosomal protein L9, C-terminal domain XDD1_0438 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XDD1_0438 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XDD1_0439 PF00459 Inositol monophosphatase family XDD1_0440 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) XDD1_0442 PF06526 Protein of unknown function (DUF1107) XDD1_0443 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system XDD1_0444 PF07927 HicA toxin of bacterial toxin-antitoxin, XDD1_0445 PF01625 Peptide methionine sulfoxide reductase XDD1_0446 PF17243 POTRA domain TamA domain 1 XDD1_0446 PF07244 Surface antigen variable number repeat XDD1_0446 PF01103 Surface antigen XDD1_0447 PF04357 TamB, inner membrane protein subunit of TAM complex XDD1_0448 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like XDD1_0449 PF00719 Inorganic pyrophosphatase XDD1_0450 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain XDD1_0452 PF08245 Mur ligase middle domain XDD1_0452 PF02875 Mur ligase family, glutamate ligase domain XDD1_0452 PF01225 Mur ligase family, catalytic domain XDD1_0453 PF02863 Arginine repressor, C-terminal domain XDD1_0453 PF01316 Arginine repressor, DNA binding domain XDD1_0455 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XDD1_0455 PF00056 lactate/malate dehydrogenase, NAD binding domain XDD1_0456 PF13693 Winged helix-turn-helix DNA-binding XDD1_0459 PF00348 Polyprenyl synthetase XDD1_0461 PF00829 Ribosomal prokaryotic L21 protein XDD1_0462 PF01016 Ribosomal L27 protein XDD1_0463 PF01018 GTP1/OBG XDD1_0463 PF01926 50S ribosome-binding GTPase XDD1_0466 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XDD1_0467 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family XDD1_0469 PF03449 Transcription elongation factor, N-terminal XDD1_0469 PF01272 Transcription elongation factor, GreA/GreB, C-term XDD1_0470 PF01985 CRS1 / YhbY (CRM) domain XDD1_0471 PF01728 FtsJ-like methyltransferase XDD1_0472 PF17862 AAA+ lid domain XDD1_0472 PF06480 FtsH Extracellular XDD1_0472 PF01434 Peptidase family M41 XDD1_0472 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_0473 PF00809 Pterin binding enzyme XDD1_0474 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XDD1_0474 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XDD1_0474 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XDD1_0474 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XDD1_0475 PF03840 Preprotein translocase SecG subunit XDD1_0476 PF02576 RimP N-terminal domain XDD1_0476 PF17384 RimP C-terminal SH3 domain XDD1_0477 PF08529 NusA N-terminal domain XDD1_0477 PF13184 NusA-like KH domain XDD1_0477 PF00575 S1 RNA binding domain XDD1_0478 PF04760 Translation initiation factor IF-2, N-terminal region XDD1_0478 PF11987 Translation-initiation factor 2 XDD1_0478 PF03144 Elongation factor Tu domain 2 XDD1_0478 PF00009 Elongation factor Tu GTP binding domain XDD1_0478 PF08364 Bacterial translation initiation factor IF-2 associated region XDD1_0479 PF02033 Ribosome-binding factor A XDD1_0480 PF09157 Pseudouridine synthase II TruB, C-terminal XDD1_0480 PF01509 TruB family pseudouridylate synthase (N terminal domain) XDD1_0480 PF16198 tRNA pseudouridylate synthase B C-terminal domain XDD1_0481 PF00312 Ribosomal protein S15 XDD1_0482 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XDD1_0482 PF01138 3' exoribonuclease family, domain 1 XDD1_0482 PF03725 3' exoribonuclease family, domain 2 XDD1_0482 PF00013 KH domain XDD1_0482 PF00575 S1 RNA binding domain XDD1_0483 PF07719 Tetratricopeptide repeat XDD1_0483 PF13181 Tetratricopeptide repeat XDD1_0484 PF03880 DbpA RNA binding domain XDD1_0484 PF00271 Helicase conserved C-terminal domain XDD1_0484 PF00270 DEAD/DEAH box helicase XDD1_0484 PF12343 Cold shock protein DEAD box A XDD1_0487 PF00072 Response regulator receiver domain XDD1_0487 PF04397 LytTr DNA-binding domain XDD1_0488 PF06580 Histidine kinase XDD1_0488 PF07694 5TMR of 5TMR-LYT XDD1_0489 PF09134 Invasin, domain 3 XDD1_0489 PF11924 Inverse autotransporter, beta-domain XDD1_0489 PF02369 Bacterial Ig-like domain (group 1) XDD1_0490 PF13533 Biotin-lipoyl like XDD1_0494 PF13508 Acetyltransferase (GNAT) domain XDD1_0497 PF01243 Pyridoxamine 5'-phosphate oxidase XDD1_0499 PF03477 ATP cone domain XDD1_0499 PF13597 Anaerobic ribonucleoside-triphosphate reductase XDD1_0501 PF01042 Endoribonuclease L-PSP XDD1_0502 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain XDD1_0502 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain XDD1_0503 PF00149 Calcineurin-like phosphoesterase XDD1_0504 PF00583 Acetyltransferase (GNAT) family XDD1_0506 PF00384 Molybdopterin oxidoreductase XDD1_0511 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XDD1_0511 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XDD1_0514 PF12706 Beta-lactamase superfamily domain XDD1_0517 PF13592 Winged helix-turn helix XDD1_0517 PF13358 DDE superfamily endonuclease XDD1_0519 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_0520 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_0521 PF00005 ABC transporter XDD1_0522 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_0523 PF04303 PrpF protein XDD1_0524 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XDD1_0525 PF01850 PIN domain XDD1_0527 PF00583 Acetyltransferase (GNAT) family XDD1_0528 PF06877 Regulator of ribonuclease activity B XDD1_0529 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XDD1_0529 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XDD1_0530 PF01053 Cys/Met metabolism PLP-dependent enzyme XDD1_0531 PF03553 Na+/H+ antiporter family XDD1_0532 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_0535 PF13358 DDE superfamily endonuclease XDD1_0539 PF09386 Antitoxin ParD XDD1_0540 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XDD1_0544 PF04754 Putative transposase, YhgA-like XDD1_0548 PF01476 LysM domain XDD1_0548 PF11924 Inverse autotransporter, beta-domain XDD1_0548 PF02369 Bacterial Ig-like domain (group 1) XDD1_0548 PF07979 Intimin C-type lectin domain XDD1_0550 PF13358 DDE superfamily endonuclease XDD1_0554 PF01053 Cys/Met metabolism PLP-dependent enzyme XDD1_0555 PF06316 Enterobacterial Ail/Lom protein XDD1_0556 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XDD1_0557 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin XDD1_0559 PF04754 Putative transposase, YhgA-like XDD1_0563 PF17885 Styrene monooxygenase A putative substrate binding domain XDD1_0564 PF01613 Flavin reductase like domain XDD1_0565 PF04199 Putative cyclase XDD1_0566 PF01593 Flavin containing amine oxidoreductase XDD1_0569 PF00005 ABC transporter XDD1_0569 PF12848 ABC transporter XDD1_0569 PF16326 ABC transporter C-terminal domain XDD1_0571 PF02342 TerD domain XDD1_0572 PF12833 Helix-turn-helix domain XDD1_0577 PF01850 PIN domain XDD1_0582 PF01494 FAD binding domain XDD1_0583 PF07883 Cupin domain XDD1_0584 PF01557 Fumarylacetoacetate (FAA) hydrolase family XDD1_0585 PF00795 Carbon-nitrogen hydrolase XDD1_0586 PF17645 Arylmalonate decarboxylase XDD1_0591 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) XDD1_0592 PF01867 CRISPR associated protein Cas1 XDD1_0594 PF09704 CRISPR-associated protein (Cas_Cas5) XDD1_0598 PF00270 DEAD/DEAH box helicase XDD1_0598 PF00271 Helicase conserved C-terminal domain XDD1_0598 PF18019 HD domain XDD1_0606 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XDD1_0606 PF00356 Bacterial regulatory proteins, lacI family XDD1_0607 PF01202 Shikimate kinase XDD1_0608 PF02447 GntP family permease XDD1_0616 PF13358 DDE superfamily endonuclease XDD1_0618 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XDD1_0623 PF02342 TerD domain XDD1_0624 PF03741 Integral membrane protein TerC family XDD1_0625 PF05099 Tellurite resistance protein TerB XDD1_0626 PF02342 TerD domain XDD1_0627 PF02342 TerD domain XDD1_0630 PF11202 Phosphoribosyl transferase (PRTase) XDD1_0630 PF15608 PELOTA RNA binding domain XDD1_0633 PF03350 Uncharacterized protein family, UPF0114 XDD1_0637 PF00756 Putative esterase XDD1_0637 PF11806 Domain of unknown function (DUF3327) XDD1_0638 PF00892 EamA-like transporter family XDD1_0639 PF13505 Outer membrane protein beta-barrel domain XDD1_0642 PF13098 Thioredoxin-like domain XDD1_0642 PF02683 Cytochrome C biogenesis protein transmembrane region XDD1_0642 PF11412 Disulphide bond corrector protein DsbC XDD1_0643 PF03605 Anaerobic c4-dicarboxylate membrane transporter XDD1_0644 PF10415 Fumarase C C-terminus XDD1_0644 PF00206 Lyase XDD1_0645 PF04186 FxsA cytoplasmic membrane protein XDD1_0646 PF00166 Chaperonin 10 Kd subunit XDD1_0647 PF00118 TCP-1/cpn60 chaperonin family XDD1_0648 PF13698 Domain of unknown function (DUF4156) XDD1_0649 PF04055 Radical SAM superfamily XDD1_0650 PF08207 Elongation factor P (EF-P) KOW-like domain XDD1_0650 PF09285 Elongation factor P, C-terminal XDD1_0650 PF01132 Elongation factor P (EF-P) OB domain XDD1_0651 PF00893 Small Multidrug Resistance protein XDD1_0652 PF13693 Winged helix-turn-helix DNA-binding XDD1_0653 PF01381 Helix-turn-helix XDD1_0654 PF01156 Inosine-uridine preferring nucleoside hydrolase XDD1_0655 PF01266 FAD dependent oxidoreductase XDD1_0657 PF00171 Aldehyde dehydrogenase family XDD1_0658 PF00245 Alkaline phosphatase XDD1_0659 PF13610 DDE domain XDD1_0660 PF13610 DDE domain XDD1_0661 PF00144 Beta-lactamase XDD1_0663 PF03739 Lipopolysaccharide export system permease LptF/LptG XDD1_0664 PF03739 Lipopolysaccharide export system permease LptF/LptG XDD1_0665 PF00883 Cytosol aminopeptidase family, catalytic domain XDD1_0665 PF02789 Cytosol aminopeptidase family, N-terminal domain XDD1_0666 PF04364 DNA polymerase III chi subunit, HolC XDD1_0667 PF08264 Anticodon-binding domain of tRNA XDD1_0667 PF00133 tRNA synthetases class I (I, L, M and V) XDD1_0667 PF10458 Valyl tRNA synthetase tRNA binding arm XDD1_0670 PF13592 Winged helix-turn helix XDD1_0670 PF13358 DDE superfamily endonuclease XDD1_0673 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family XDD1_0674 PF01810 LysE type translocator XDD1_0675 PF00440 Bacterial regulatory proteins, tetR family XDD1_0676 PF07690 Major Facilitator Superfamily XDD1_0677 PF13358 DDE superfamily endonuclease XDD1_0681 PF13744 Helix-turn-helix domain XDD1_0683 PF01139 tRNA-splicing ligase RtcB XDD1_0686 PF00753 Metallo-beta-lactamase superfamily XDD1_0687 PF01370 NAD dependent epimerase/dehydratase family XDD1_0688 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XDD1_0688 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XDD1_0693 PF13416 Bacterial extracellular solute-binding protein XDD1_0694 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_0695 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_0696 PF00005 ABC transporter XDD1_0696 PF08402 TOBE domain XDD1_0698 PF01906 Putative heavy-metal-binding XDD1_0699 PF00145 C-5 cytosine-specific DNA methylase XDD1_0702 PF13755 Sensor N-terminal transmembrane domain XDD1_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_0702 PF00672 HAMP domain XDD1_0702 PF13756 Stimulus-sensing domain XDD1_0702 PF00512 His Kinase A (phospho-acceptor) domain XDD1_0704 PF03852 DNA mismatch endonuclease Vsr XDD1_0709 PF01381 Helix-turn-helix XDD1_0710 PF01177 Asp/Glu/Hydantoin racemase XDD1_0711 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0711 PF03466 LysR substrate binding domain XDD1_0712 PF00375 Sodium:dicarboxylate symporter family XDD1_0718 PF13358 DDE superfamily endonuclease XDD1_0721 PF08468 Methyltransferase small domain N-terminal XDD1_0721 PF05175 Methyltransferase small domain XDD1_0722 PF03603 DNA polymerase III psi subunit XDD1_0723 PF00583 Acetyltransferase (GNAT) family XDD1_0724 PF01381 Helix-turn-helix XDD1_0725 PF13657 HipA N-terminal domain XDD1_0725 PF07804 HipA-like C-terminal domain XDD1_0726 PF00009 Elongation factor Tu GTP binding domain XDD1_0726 PF03144 Elongation factor Tu domain 2 XDD1_0726 PF16658 Class II release factor RF3, C-terminal domain XDD1_0728 PF01734 Patatin-like phospholipase XDD1_0729 PF01026 TatD related DNase XDD1_0730 PF01773 Na+ dependent nucleoside transporter N-terminus XDD1_0730 PF07670 Nucleoside recognition XDD1_0730 PF07662 Na+ dependent nucleoside transporter C-terminus XDD1_0731 PF01791 DeoC/LacD family aldolase XDD1_0732 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain XDD1_0732 PF00591 Glycosyl transferase family, a/b domain XDD1_0732 PF02885 Glycosyl transferase family, helical bundle domain XDD1_0733 PF01676 Metalloenzyme superfamily XDD1_0734 PF01048 Phosphorylase superfamily XDD1_0735 PF00419 Fimbrial protein XDD1_0736 PF00577 Outer membrane usher protein XDD1_0736 PF13954 PapC N-terminal domain XDD1_0736 PF13953 PapC C-terminal domain XDD1_0737 PF02753 Pili assembly chaperone PapD, C-terminal domain XDD1_0737 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XDD1_0740 PF01381 Helix-turn-helix XDD1_0742 PF02142 MGS-like domain XDD1_0742 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XDD1_0742 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XDD1_0743 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XDD1_0743 PF00117 Glutamine amidotransferase class-I XDD1_0744 PF05173 Dihydrodipicolinate reductase, C-terminus XDD1_0744 PF01113 Dihydrodipicolinate reductase, N-terminus XDD1_0745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0745 PF03466 LysR substrate binding domain XDD1_0750 PF02401 LytB protein XDD1_0751 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XDD1_0752 PF01252 Signal peptidase (SPase) II XDD1_0753 PF08264 Anticodon-binding domain of tRNA XDD1_0753 PF00133 tRNA synthetases class I (I, L, M and V) XDD1_0753 PF06827 Zinc finger found in FPG and IleRS XDD1_0754 PF06574 FAD synthetase XDD1_0754 PF01687 Riboflavin kinase XDD1_0755 PF01649 Ribosomal protein S20 XDD1_0756 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_0756 PF03466 LysR substrate binding domain XDD1_0757 PF06965 Na+/H+ antiporter 1 XDD1_0759 PF00226 DnaJ domain XDD1_0759 PF00684 DnaJ central domain XDD1_0759 PF01556 DnaJ C terminal domain XDD1_0760 PF00012 Hsp70 protein XDD1_0761 PF01184 GPR1/FUN34/yaaH family XDD1_0762 PF00083 Sugar (and other) transporter XDD1_0762 PF08946 Osmosensory transporter coiled coil XDD1_0769 PF00732 GMC oxidoreductase XDD1_0769 PF05199 GMC oxidoreductase XDD1_0770 PF00550 Phosphopantetheine attachment site XDD1_0770 PF13193 AMP-binding enzyme C-terminal domain XDD1_0770 PF00501 AMP-binding enzyme XDD1_0770 PF00668 Condensation domain XDD1_0772 PF07690 Major Facilitator Superfamily XDD1_0775 PF00994 Probable molybdopterin binding domain XDD1_0776 PF00923 Transaldolase/Fructose-6-phosphate aldolase XDD1_0777 PF03883 Peroxide stress protein YaaA XDD1_0778 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_0778 PF14821 Threonine synthase N terminus XDD1_0779 PF00288 GHMP kinases N terminal domain XDD1_0779 PF08544 GHMP kinases C terminal XDD1_0780 PF01842 ACT domain XDD1_0780 PF00696 Amino acid kinase family XDD1_0780 PF00742 Homoserine dehydrogenase XDD1_0780 PF13840 ACT domain XDD1_0780 PF03447 Homoserine dehydrogenase, NAD binding domain XDD1_0781 PF00072 Response regulator receiver domain XDD1_0781 PF00486 Transcriptional regulatory protein, C terminal XDD1_0782 PF05981 CreA protein XDD1_0784 PF06445 GyrI-like small molecule binding domain XDD1_0784 PF12833 Helix-turn-helix domain XDD1_0785 PF00300 Histidine phosphatase superfamily (branch 1) XDD1_0786 PF01931 Protein of unknown function DUF84 XDD1_0787 PF01371 Trp repressor protein XDD1_0788 PF01464 Transglycosylase SLT domain XDD1_0788 PF14718 Soluble lytic murein transglycosylase L domain XDD1_0789 PF00005 ABC transporter XDD1_0789 PF12848 ABC transporter XDD1_0790 PF00005 ABC transporter XDD1_0791 PF13521 AAA domain XDD1_0791 PF01381 Helix-turn-helix XDD1_0792 PF18073 Rubredoxin metal binding domain XDD1_0793 PF18429 Domain of unknown function (DUF5609) XDD1_0794 PF10144 Bacterial virulence factor haemolysin XDD1_0796 PF00248 Aldo/keto reductase family XDD1_0797 PF09335 SNARE associated Golgi protein XDD1_0798 PF01053 Cys/Met metabolism PLP-dependent enzyme XDD1_0799 PF01618 MotA/TolQ/ExbB proton channel family XDD1_0800 PF02472 Biopolymer transport protein ExbD/TolR XDD1_0803 PF00381 PTS HPr component phosphorylation site XDD1_0804 PF00232 Glycosyl hydrolase family 1 XDD1_0806 PF02378 Phosphotransferase system, EIIC XDD1_0807 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XDD1_0811 PF00267 Gram-negative porin XDD1_0812 PF04381 Putative exonuclease, RdgC XDD1_0813 PF00480 ROK family XDD1_0814 PF02872 5'-nucleotidase, C-terminal domain XDD1_0814 PF00149 Calcineurin-like phosphoesterase XDD1_0815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_0816 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_0817 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_0819 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_0821 PF13476 AAA domain XDD1_0822 PF00149 Calcineurin-like phosphoesterase XDD1_0822 PF12320 Type 5 capsule protein repressor C-terminal domain XDD1_0824 PF00486 Transcriptional regulatory protein, C terminal XDD1_0824 PF00072 Response regulator receiver domain XDD1_0825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_0825 PF00512 His Kinase A (phospho-acceptor) domain XDD1_0825 PF00989 PAS fold XDD1_0825 PF11808 Phosphate regulon sensor protein PhoR XDD1_0826 PF05525 Branched-chain amino acid transport protein XDD1_0827 PF00209 Sodium:neurotransmitter symporter family XDD1_0829 PF10417 C-terminal domain of 1-Cys peroxiredoxin XDD1_0829 PF00578 AhpC/TSA family XDD1_0831 PF04336 Acyl carrier protein phosphodiesterase XDD1_0832 PF02547 Queuosine biosynthesis protein XDD1_0833 PF01702 Queuine tRNA-ribosyltransferase XDD1_0834 PF02699 Preprotein translocase subunit XDD1_0835 PF07549 SecD/SecF GG Motif XDD1_0835 PF02355 Protein export membrane protein XDD1_0835 PF13721 SecD export protein N-terminal TM region XDD1_0836 PF07549 SecD/SecF GG Motif XDD1_0836 PF02355 Protein export membrane protein XDD1_0837 PF03477 ATP cone domain XDD1_0838 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XDD1_0838 PF01872 RibD C-terminal domain XDD1_0839 PF00885 6,7-dimethyl-8-ribityllumazine synthase XDD1_0840 PF01029 NusB family XDD1_0841 PF00586 AIR synthase related protein, N-terminal domain XDD1_0841 PF02769 AIR synthase related protein, C-terminal domain XDD1_0842 PF04608 Phosphatidylglycerophosphatase A XDD1_0843 PF01470 Pyroglutamyl peptidase XDD1_0847 PF00155 Aminotransferase class I and II XDD1_0848 PF03553 Na+/H+ antiporter family XDD1_0849 PF00356 Bacterial regulatory proteins, lacI family XDD1_0857 PF02780 Transketolase, C-terminal domain XDD1_0857 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XDD1_0857 PF02779 Transketolase, pyrimidine binding domain XDD1_0858 PF00348 Polyprenyl synthetase XDD1_0859 PF02609 Exonuclease VII small subunit XDD1_0860 PF02926 THUMP domain XDD1_0860 PF02568 Thiamine biosynthesis protein (ThiI) XDD1_0861 PF02558 Ketopantoate reductase PanE/ApbA XDD1_0861 PF08546 Ketopantoate reductase PanE/ApbA C terminal XDD1_0862 PF04461 Protein of unknown function (DUF520) XDD1_0863 PF07690 Major Facilitator Superfamily XDD1_0864 PF01040 UbiA prenyltransferase family XDD1_0865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XDD1_0866 PF00510 Cytochrome c oxidase subunit III XDD1_0867 PF00115 Cytochrome C and Quinol oxidase polypeptide I XDD1_0868 PF06481 COX Aromatic Rich Motif XDD1_0868 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XDD1_0869 PF03502 Nucleoside-specific channel-forming protein, Tsx XDD1_0871 PF07690 Major Facilitator Superfamily XDD1_0872 PF03923 Uncharacterized lipoprotein XDD1_0872 PF08139 Prokaryotic membrane lipoprotein lipid attachment site XDD1_0873 PF01722 BolA-like protein XDD1_0875 PF05697 Bacterial trigger factor protein (TF) XDD1_0875 PF05698 Bacterial trigger factor protein (TF) C-terminus XDD1_0875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XDD1_0876 PF00574 Clp protease XDD1_0877 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_0877 PF07724 AAA domain (Cdc48 subfamily) XDD1_0877 PF06689 ClpX C4-type zinc finger XDD1_0878 PF02190 ATP-dependent protease La (LON) substrate-binding domain XDD1_0878 PF05362 Lon protease (S16) C-terminal proteolytic domain XDD1_0878 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_0879 PF00216 Bacterial DNA-binding protein XDD1_0880 PF13145 PPIC-type PPIASE domain XDD1_0884 PF06508 Queuosine biosynthesis protein QueC XDD1_0886 PF13404 AsnC-type helix-turn-helix domain XDD1_0886 PF01037 Lrp/AsnC ligand binding domain XDD1_0887 PF00005 ABC transporter XDD1_0887 PF00664 ABC transporter transmembrane region XDD1_0888 PF00005 ABC transporter XDD1_0888 PF00664 ABC transporter transmembrane region XDD1_0889 PF00543 Nitrogen regulatory protein P-II XDD1_0890 PF00909 Ammonium Transporter Family XDD1_0892 PF13592 Winged helix-turn helix XDD1_0892 PF13358 DDE superfamily endonuclease XDD1_0894 PF05321 Haemolysin expression modulating protein XDD1_0895 PF10757 Biofilm formation regulator YbaJ XDD1_0897 PF00873 AcrB/AcrD/AcrF family XDD1_0898 PF00529 HlyD membrane-fusion protein of T1SS XDD1_0898 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_0899 PF00440 Bacterial regulatory proteins, tetR family XDD1_0899 PF08361 MAATS-type transcriptional repressor, C-terminal region XDD1_0900 PF12794 Mechanosensitive ion channel inner membrane domain 1 XDD1_0900 PF12795 Mechanosensitive ion channel porin domain XDD1_0900 PF00924 Mechanosensitive ion channel XDD1_0901 PF10689 Protein of unknown function (DUF2496) XDD1_0903 PF00156 Phosphoribosyl transferase domain XDD1_0904 PF12170 DNA polymerase III tau subunit V interacting with alpha XDD1_0904 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XDD1_0904 PF12169 DNA polymerase III subunits gamma and tau domain III XDD1_0905 PF02575 YbaB/EbfC DNA-binding family XDD1_0907 PF13662 Toprim domain XDD1_0907 PF02132 RecR protein XDD1_0908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_0908 PF00183 Hsp90 protein XDD1_0910 PF05191 Adenylate kinase, active site lid XDD1_0912 PF00762 Ferrochelatase XDD1_0913 PF02706 Chain length determinant protein XDD1_0914 PF00294 pfkB family carbohydrate kinase XDD1_0915 PF00999 Sodium/hydrogen exchanger family XDD1_0915 PF02254 TrkA-N domain XDD1_0916 PF07690 Major Facilitator Superfamily XDD1_0917 PF00149 Calcineurin-like phosphoesterase XDD1_0917 PF02872 5'-nucleotidase, C-terminal domain XDD1_0919 PF04073 Aminoacyl-tRNA editing domain XDD1_0920 PF01963 TraB family XDD1_0921 PF00403 Heavy-metal-associated domain XDD1_0922 PF13411 MerR HTH family regulatory protein XDD1_0923 PF01957 NfeD-like C-terminal, partner-binding XDD1_0924 PF16200 C-terminal region of band_7 XDD1_0924 PF01145 SPFH domain / Band 7 family XDD1_0925 PF00085 Thioredoxin XDD1_0926 PF00106 short chain dehydrogenase XDD1_0927 PF13472 GDSL-like Lipase/Acylhydrolase family XDD1_0928 PF00005 ABC transporter XDD1_0931 PF00677 Lumazine binding domain XDD1_0933 PF02655 ATP-grasp domain XDD1_0933 PF00206 Lyase XDD1_0934 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_0936 PF05373 L-proline 3-hydroxylase, C-terminal XDD1_0936 PF05118 Aspartyl/Asparaginyl beta-hydroxylase XDD1_0937 PF02222 ATP-grasp domain XDD1_0937 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XDD1_0938 PF00731 AIR carboxylase XDD1_0939 PF00149 Calcineurin-like phosphoesterase XDD1_0940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XDD1_0942 PF09190 DALR domain XDD1_0942 PF01406 tRNA synthetases class I (C) catalytic domain XDD1_0945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XDD1_0945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XDD1_0954 PF05973 Phage derived protein Gp49-like (DUF891) XDD1_0955 PF01381 Helix-turn-helix XDD1_0959 PF03527 RHS protein XDD1_0959 PF05593 RHS Repeat XDD1_0969 PF05593 RHS Repeat XDD1_0969 PF03527 RHS protein XDD1_0972 PF04717 Type VI secretion system, phage-baseplate injector XDD1_0976 PF00753 Metallo-beta-lactamase superfamily XDD1_0979 PF01476 LysM domain XDD1_0979 PF01464 Transglycosylase SLT domain XDD1_0980 PF00753 Metallo-beta-lactamase superfamily XDD1_0980 PF16123 Hydroxyacylglutathione hydrolase C-terminus XDD1_0981 PF08241 Methyltransferase domain XDD1_0982 PF00075 RNase H XDD1_0983 PF00929 Exonuclease XDD1_0987 PF02780 Transketolase, C-terminal domain XDD1_0987 PF00456 Transketolase, thiamine diphosphate binding domain XDD1_0987 PF02779 Transketolase, pyrimidine binding domain XDD1_0988 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XDD1_0988 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XDD1_0989 PF00162 Phosphoglycerate kinase XDD1_0990 PF01116 Fructose-bisphosphate aldolase class-II XDD1_0992 PF00854 POT family XDD1_0998 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XDD1_0998 PF01243 Pyridoxamine 5'-phosphate oxidase XDD1_0999 PF00162 Phosphoglycerate kinase XDD1_1000 PF00202 Aminotransferase class-III XDD1_1005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XDD1_1005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_1008 PF13592 Winged helix-turn helix XDD1_1008 PF13358 DDE superfamily endonuclease XDD1_1010 PF00107 Zinc-binding dehydrogenase XDD1_1010 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_1011 PF00465 Iron-containing alcohol dehydrogenase XDD1_1012 PF01613 Flavin reductase like domain XDD1_1013 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal XDD1_1013 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal XDD1_1017 PF12833 Helix-turn-helix domain XDD1_1017 PF02311 AraC-like ligand binding domain XDD1_1018 PF07690 Major Facilitator Superfamily XDD1_1019 PF03328 HpcH/HpaI aldolase/citrate lyase family XDD1_1020 PF01557 Fumarylacetoacetate (FAA) hydrolase family XDD1_1021 PF00171 Aldehyde dehydrogenase family XDD1_1022 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase XDD1_1023 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XDD1_1024 PF00171 Aldehyde dehydrogenase family XDD1_1025 PF01557 Fumarylacetoacetate (FAA) hydrolase family XDD1_1026 PF01557 Fumarylacetoacetate (FAA) hydrolase family XDD1_1028 PF01047 MarR family XDD1_1029 PF00107 Zinc-binding dehydrogenase XDD1_1029 PF13823 Alcohol dehydrogenase GroES-associated XDD1_1029 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_1031 PF00668 Condensation domain XDD1_1031 PF00550 Phosphopantetheine attachment site XDD1_1031 PF13193 AMP-binding enzyme C-terminal domain XDD1_1031 PF00501 AMP-binding enzyme XDD1_1035 PF00171 Aldehyde dehydrogenase family XDD1_1036 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XDD1_1036 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XDD1_1036 PF00205 Thiamine pyrophosphate enzyme, central domain XDD1_1038 PF00144 Beta-lactamase XDD1_1039 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XDD1_1039 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XDD1_1040 PF00474 Sodium:solute symporter family XDD1_1041 PF00294 pfkB family carbohydrate kinase XDD1_1042 PF01261 Xylose isomerase-like TIM barrel XDD1_1043 PF04962 KduI/IolB family XDD1_1046 PF00583 Acetyltransferase (GNAT) family XDD1_1048 PF12833 Helix-turn-helix domain XDD1_1048 PF01965 DJ-1/PfpI family XDD1_1050 PF00857 Isochorismatase family XDD1_1054 PF13693 Winged helix-turn-helix DNA-binding XDD1_1056 PF00561 alpha/beta hydrolase fold XDD1_1057 PF00892 EamA-like transporter family XDD1_1067 PF03796 DnaB-like helicase C terminal domain XDD1_1067 PF00772 DnaB-like helicase N terminal domain XDD1_1075 PF01131 DNA topoisomerase XDD1_1075 PF01751 Toprim domain XDD1_1079 PF00436 Single-strand binding protein family XDD1_1081 PF13693 Winged helix-turn-helix DNA-binding XDD1_1100 PF02369 Bacterial Ig-like domain (group 1) XDD1_1100 PF09134 Invasin, domain 3 XDD1_1100 PF11924 Inverse autotransporter, beta-domain XDD1_1101 PF00294 pfkB family carbohydrate kinase XDD1_1102 PF01209 ubiE/COQ5 methyltransferase family XDD1_1112 PF05488 PAAR motif XDD1_1112 PF05593 RHS Repeat XDD1_1114 PF04717 Type VI secretion system, phage-baseplate injector XDD1_1117 PF17287 POTRA domain XDD1_1117 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XDD1_1117 PF08479 POTRA domain, ShlB-type XDD1_1118 PF02794 RTX toxin acyltransferase family XDD1_1119 PF13332 Hemagglutinin repeat XDD1_1119 PF04829 Pre-toxin domain with VENN motif XDD1_1119 PF05594 Haemagluttinin repeat XDD1_1128 PF06755 CbtA_toxin of type IV toxin-antitoxin system XDD1_1132 PF00589 Phage integrase family XDD1_1133 PF01464 Transglycosylase SLT domain XDD1_1133 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain XDD1_1134 PF04362 Bacterial Fe(2+) trafficking XDD1_1135 PF14815 NUDIX domain XDD1_1135 PF00633 Helix-hairpin-helix motif XDD1_1135 PF10576 Iron-sulfur binding domain of endonuclease III XDD1_1135 PF00730 HhH-GPD superfamily base excision DNA repair protein XDD1_1136 PF02390 Putative methyltransferase XDD1_1137 PF04320 Protein with unknown function (DUF469) XDD1_1138 PF04960 Glutaminase XDD1_1139 PF11101 Protein of unknown function (DUF2884) XDD1_1140 PF01497 Periplasmic binding protein XDD1_1142 PF01161 Phosphatidylethanolamine-binding protein XDD1_1144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1144 PF03466 LysR substrate binding domain XDD1_1145 PF00330 Aconitase family (aconitate hydratase) XDD1_1146 PF00694 Aconitase C-terminal domain XDD1_1150 PF06969 HemN C-terminal domain XDD1_1150 PF04055 Radical SAM superfamily XDD1_1151 PF01725 Ham1 family XDD1_1152 PF02325 YGGT family XDD1_1153 PF14748 Pyrroline-5-carboxylate reductase dimerisation XDD1_1153 PF03807 NADP oxidoreductase coenzyme F420-dependent XDD1_1154 PF01168 Alanine racemase, N-terminal domain XDD1_1155 PF00437 Type II/IV secretion system protein XDD1_1156 PF03652 Holliday junction resolvase XDD1_1157 PF02622 Uncharacterized ACR, COG1678 XDD1_1158 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XDD1_1158 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XDD1_1159 PF04452 RNA methyltransferase XDD1_1161 PF01478 Type IV leader peptidase family XDD1_1161 PF06750 Bacterial Peptidase A24 N-terminal domain XDD1_1163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1163 PF03466 LysR substrate binding domain XDD1_1164 PF03466 LysR substrate binding domain XDD1_1164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1165 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XDD1_1165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XDD1_1166 PF09317 Domain of unknown function (DUF1974) XDD1_1166 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XDD1_1166 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XDD1_1167 PF13580 SIS domain XDD1_1168 PF13230 Glutamine amidotransferases class-II XDD1_1169 PF03734 L,D-transpeptidase catalytic domain XDD1_1171 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) XDD1_1171 PF11973 NQRA C-terminal domain XDD1_1172 PF03116 NQR2, RnfD, RnfE family XDD1_1173 PF04205 FMN-binding domain XDD1_1174 PF02508 Rnf-Nqr subunit, membrane protein XDD1_1175 PF02508 Rnf-Nqr subunit, membrane protein XDD1_1176 PF00175 Oxidoreductase NAD-binding domain XDD1_1176 PF00111 2Fe-2S iron-sulfur cluster binding domain XDD1_1176 PF00970 Oxidoreductase FAD-binding domain XDD1_1177 PF02424 ApbE family XDD1_1178 PF04400 (Na+)-NQR maturation NqrM XDD1_1179 PF04542 Sigma-70 region 2 XDD1_1179 PF08281 Sigma-70, region 4 XDD1_1180 PF00593 TonB dependent receptor XDD1_1180 PF07715 TonB-dependent Receptor Plug Domain XDD1_1182 PF05199 GMC oxidoreductase XDD1_1182 PF00732 GMC oxidoreductase XDD1_1183 PF00171 Aldehyde dehydrogenase family XDD1_1184 PF13977 BetI-type transcriptional repressor, C-terminal XDD1_1184 PF00440 Bacterial regulatory proteins, tetR family XDD1_1185 PF02028 BCCT, betaine/carnitine/choline family transporter XDD1_1186 PF07690 Major Facilitator Superfamily XDD1_1187 PF11798 IMS family HHH motif XDD1_1187 PF00817 impB/mucB/samB family XDD1_1187 PF11799 impB/mucB/samB family C-terminal domain XDD1_1188 PF07687 Peptidase dimerisation domain XDD1_1188 PF01546 Peptidase family M20/M25/M40 XDD1_1189 PF00156 Phosphoribosyl transferase domain XDD1_1191 PF07417 Sigma factor-binding transcriptional regulator Crl XDD1_1192 PF00696 Amino acid kinase family XDD1_1192 PF01472 PUA domain XDD1_1193 PF00171 Aldehyde dehydrogenase family XDD1_1194 PF01202 Shikimate kinase XDD1_1195 PF13193 AMP-binding enzyme C-terminal domain XDD1_1195 PF00501 AMP-binding enzyme XDD1_1195 PF01553 Acyltransferase XDD1_1196 PF07690 Major Facilitator Superfamily XDD1_1197 PF02464 Competence-damaged protein XDD1_1198 PF00154 recA bacterial DNA recombination protein XDD1_1200 PF01411 tRNA synthetases class II (A) XDD1_1200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_1200 PF02272 DHHA1 domain XDD1_1201 PF02599 Global regulator protein family XDD1_1202 PF04262 Glutamate-cysteine ligase XDD1_1203 PF02664 S-Ribosylhomocysteinase (LuxS) XDD1_1204 PF00571 CBS domain XDD1_1204 PF01595 Cyclin M transmembrane N-terminal domain XDD1_1204 PF03471 Transporter associated domain XDD1_1205 PF01578 Cytochrome C assembly protein XDD1_1206 PF02881 SRP54-type protein, helical bundle domain XDD1_1206 PF02978 Signal peptide binding domain XDD1_1206 PF00448 SRP54-type protein, GTPase domain XDD1_1207 PF00886 Ribosomal protein S16 XDD1_1208 PF01782 RimM N-terminal domain XDD1_1208 PF05239 PRC-barrel domain XDD1_1209 PF01746 tRNA (Guanine-1)-methyltransferase XDD1_1210 PF01245 Ribosomal protein L19 XDD1_1211 PF14698 Argininosuccinate lyase C-terminal XDD1_1211 PF00206 Lyase XDD1_1213 PF07690 Major Facilitator Superfamily XDD1_1216 PF00793 DAHP synthetase I family XDD1_1217 PF02153 Prephenate dehydrogenase XDD1_1217 PF01817 Chorismate mutase type II XDD1_1218 PF00800 Prephenate dehydratase XDD1_1218 PF01817 Chorismate mutase type II XDD1_1219 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XDD1_1220 PF13525 Outer membrane lipoprotein XDD1_1221 PF01479 S4 domain XDD1_1221 PF00849 RNA pseudouridylate synthase XDD1_1223 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_1223 PF02861 Clp amino terminal domain, pathogenicity island component XDD1_1223 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_1223 PF07724 AAA domain (Cdc48 subfamily) XDD1_1223 PF17871 AAA lid domain XDD1_1230 PF10043 Predicted periplasmic lipoprotein (DUF2279) XDD1_1231 PF13091 PLD-like domain XDD1_1232 PF13380 CoA binding domain XDD1_1232 PF13607 Succinyl-CoA ligase like flavodoxin domain XDD1_1232 PF00583 Acetyltransferase (GNAT) family XDD1_1234 PF08032 RNA 2'-O ribose methyltransferase substrate binding XDD1_1234 PF00588 SpoU rRNA Methylase family XDD1_1236 PF00593 TonB dependent receptor XDD1_1236 PF07660 Secretin and TonB N terminus short domain XDD1_1236 PF07715 TonB-dependent Receptor Plug Domain XDD1_1237 PF01497 Periplasmic binding protein XDD1_1239 PF01032 FecCD transport family XDD1_1240 PF01032 FecCD transport family XDD1_1241 PF00005 ABC transporter XDD1_1242 PF11575 FhuF 2Fe-2S C-terminal domain XDD1_1242 PF06276 Ferric iron reductase FhuF-like transporter XDD1_1243 PF00282 Pyridoxal-dependent decarboxylase conserved domain XDD1_1244 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) XDD1_1245 PF04183 IucA / IucC family XDD1_1245 PF06276 Ferric iron reductase FhuF-like transporter XDD1_1247 PF07690 Major Facilitator Superfamily XDD1_1248 PF00529 HlyD membrane-fusion protein of T1SS XDD1_1248 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_1249 PF01047 MarR family XDD1_1251 PF05437 Branched-chain amino acid transport protein (AzlD) XDD1_1252 PF03591 AzlC protein XDD1_1254 PF04069 Substrate binding domain of ABC-type glycine betaine transport system XDD1_1255 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1256 PF00571 CBS domain XDD1_1256 PF00005 ABC transporter XDD1_1259 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XDD1_1259 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XDD1_1260 PF00313 'Cold-shock' DNA-binding domain XDD1_1261 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XDD1_1262 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XDD1_1262 PF04055 Radical SAM superfamily XDD1_1265 PF02386 Cation transport protein XDD1_1266 PF04359 Protein of unknown function (DUF493) XDD1_1267 PF07943 Penicillin-binding protein 5, C-terminal domain XDD1_1267 PF00768 D-alanyl-D-alanine carboxypeptidase XDD1_1270 PF01098 Cell cycle protein XDD1_1271 PF03717 Penicillin-binding Protein dimerisation domain XDD1_1271 PF00905 Penicillin binding protein transpeptidase domain XDD1_1272 PF02590 Predicted SPOUT methyltransferase XDD1_1274 PF01467 Cytidylyltransferase-like XDD1_1275 PF14840 Processivity clamp loader gamma complex DNA pol III C-term XDD1_1275 PF06144 DNA polymerase III, delta subunit XDD1_1276 PF04390 Lipopolysaccharide-assembly XDD1_1277 PF08264 Anticodon-binding domain of tRNA XDD1_1277 PF13603 Leucyl-tRNA synthetase, Domain 2 XDD1_1277 PF00133 tRNA synthetases class I (I, L, M and V) XDD1_1278 PF00005 ABC transporter XDD1_1279 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1280 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1281 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_1283 PF00795 Carbon-nitrogen hydrolase XDD1_1287 PF02675 S-adenosylmethionine decarboxylase XDD1_1289 PF00795 Carbon-nitrogen hydrolase XDD1_1290 PF03471 Transporter associated domain XDD1_1290 PF00571 CBS domain XDD1_1291 PF02130 Uncharacterized protein family UPF0054 XDD1_1292 PF02562 PhoH-like protein XDD1_1293 PF04055 Radical SAM superfamily XDD1_1293 PF01938 TRAM domain XDD1_1293 PF00919 Uncharacterized protein family UPF0004 XDD1_1294 PF01494 FAD binding domain XDD1_1295 PF12441 CopG antitoxin of type II toxin-antitoxin system XDD1_1296 PF01047 MarR family XDD1_1296 PF00480 ROK family XDD1_1297 PF01979 Amidohydrolase family XDD1_1298 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XDD1_1299 PF00367 phosphotransferase system, EIIB XDD1_1299 PF02378 Phosphotransferase system, EIIC XDD1_1299 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XDD1_1300 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XDD1_1300 PF00749 tRNA synthetases class I (E and Q), catalytic domain XDD1_1301 PF03173 Putative carbohydrate binding domain XDD1_1301 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain XDD1_1301 PF00728 Glycosyl hydrolase family 20, catalytic domain XDD1_1301 PF02838 Glycosyl hydrolase family 20, domain 2 XDD1_1302 PF01475 Ferric uptake regulator family XDD1_1303 PF00258 Flavodoxin XDD1_1304 PF01402 Ribbon-helix-helix protein, copG family XDD1_1307 PF07883 Cupin domain XDD1_1307 PF12833 Helix-turn-helix domain XDD1_1308 PF00005 ABC transporter XDD1_1308 PF03412 Peptidase C39 family XDD1_1308 PF00664 ABC transporter transmembrane region XDD1_1310 PF00664 ABC transporter transmembrane region XDD1_1310 PF00005 ABC transporter XDD1_1310 PF03412 Peptidase C39 family XDD1_1312 PF02794 RTX toxin acyltransferase family XDD1_1313 PF07634 RtxA repeat XDD1_1313 PF11713 Peptidase C80 family XDD1_1313 PF11647 Membrane Localization Domain XDD1_1313 PF12146 Serine aminopeptidase, S33 XDD1_1313 PF16671 Actin cross-linking domain XDD1_1316 PF08241 Methyltransferase domain XDD1_1317 PF00459 Inositol monophosphatase family XDD1_1319 PF00891 O-methyltransferase domain XDD1_1320 PF08241 Methyltransferase domain XDD1_1321 PF12697 Alpha/beta hydrolase family XDD1_1322 PF17206 SeqA protein N-terminal domain XDD1_1322 PF03925 SeqA protein C-terminal domain XDD1_1323 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XDD1_1323 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XDD1_1323 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XDD1_1323 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XDD1_1325 PF17967 Pullulanase N2 domain XDD1_1325 PF18494 Pullulanase Ins domain XDD1_1325 PF03714 Bacterial pullanase-associated domain XDD1_1325 PF11852 Domain of unknown function (DUF3372) XDD1_1325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XDD1_1326 PF00512 His Kinase A (phospho-acceptor) domain XDD1_1326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_1326 PF13492 GAF domain XDD1_1326 PF13493 Domain of unknown function (DUF4118) XDD1_1326 PF02702 Osmosensitive K+ channel His kinase sensor domain XDD1_1327 PF02669 K+-transporting ATPase, c chain XDD1_1329 PF03814 Potassium-transporting ATPase A subunit XDD1_1332 PF10725 Protein of unknown function (DUF2517) XDD1_1333 PF01784 NIF3 (NGG1p interacting factor 3) XDD1_1334 PF07690 Major Facilitator Superfamily XDD1_1336 PF00285 Citrate synthase, C-terminal domain XDD1_1338 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XDD1_1339 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XDD1_1340 PF02910 Fumarate reductase flavoprotein C-term XDD1_1340 PF00890 FAD binding domain XDD1_1341 PF13085 2Fe-2S iron-sulfur cluster binding domain XDD1_1342 PF16078 2-oxoglutarate dehydrogenase N-terminus XDD1_1342 PF02779 Transketolase, pyrimidine binding domain XDD1_1342 PF16870 2-oxoglutarate dehydrogenase C-terminal XDD1_1342 PF00676 Dehydrogenase E1 component XDD1_1343 PF02817 e3 binding domain XDD1_1343 PF00364 Biotin-requiring enzyme XDD1_1343 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XDD1_1344 PF08442 ATP-grasp domain XDD1_1344 PF00549 CoA-ligase XDD1_1345 PF00549 CoA-ligase XDD1_1345 PF02629 CoA binding domain XDD1_1346 PF01654 Cytochrome bd terminal oxidase subunit I XDD1_1347 PF02322 Cytochrome bd terminal oxidase subunit II XDD1_1348 PF08173 Membrane bound YbgT-like protein XDD1_1349 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) XDD1_1350 PF03061 Thioesterase superfamily XDD1_1351 PF01618 MotA/TolQ/ExbB proton channel family XDD1_1352 PF02472 Biopolymer transport protein ExbD/TolR XDD1_1353 PF06519 TolA C-terminal XDD1_1354 PF04052 TolB amino-terminal domain XDD1_1354 PF07676 WD40-like Beta Propeller Repeat XDD1_1355 PF00691 OmpA family XDD1_1356 PF16331 TolA binding protein trimerisation XDD1_1356 PF13174 Tetratricopeptide repeat XDD1_1358 PF04973 Nicotinamide mononucleotide transporter XDD1_1359 PF00793 DAHP synthetase I family XDD1_1360 PF00300 Histidine phosphatase superfamily (branch 1) XDD1_1362 PF00005 ABC transporter XDD1_1363 PF10766 Multidrug efflux pump-associated protein AcrZ XDD1_1366 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1367 PF00005 ABC transporter XDD1_1367 PF03459 TOBE domain XDD1_1370 PF10282 Lactonase, 7-bladed beta-propeller XDD1_1377 PF00772 DnaB-like helicase N terminal domain XDD1_1377 PF03796 DnaB-like helicase C terminal domain XDD1_1384 PF01131 DNA topoisomerase XDD1_1384 PF01751 Toprim domain XDD1_1388 PF00436 Single-strand binding protein family XDD1_1390 PF02463 RecF/RecN/SMC N terminal domain XDD1_1391 PF13693 Winged helix-turn-helix DNA-binding XDD1_1406 PF00440 Bacterial regulatory proteins, tetR family XDD1_1410 PF00005 ABC transporter XDD1_1411 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_1412 PF09209 Tetracyclin repressor-like, C-terminal domain XDD1_1412 PF00440 Bacterial regulatory proteins, tetR family XDD1_1414 PF00270 DEAD/DEAH box helicase XDD1_1414 PF00271 Helicase conserved C-terminal domain XDD1_1415 PF01207 Dihydrouridine synthase (Dus) XDD1_1419 PF04226 Transglycosylase associated protein XDD1_1420 PF00581 Rhodanese-like domain XDD1_1422 PF13307 Helicase C-terminal domain XDD1_1422 PF06733 DEAD_2 XDD1_1423 PF00005 ABC transporter XDD1_1423 PF12848 ABC transporter XDD1_1429 PF03831 PhnA domain XDD1_1429 PF08274 PhnA Zinc-Ribbon XDD1_1430 PF00210 Ferritin-like domain XDD1_1431 PF00892 EamA-like transporter family XDD1_1433 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XDD1_1433 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XDD1_1434 PF00005 ABC transporter XDD1_1434 PF12848 ABC transporter XDD1_1435 PF00899 ThiF family XDD1_1436 PF03454 MoeA C-terminal region (domain IV) XDD1_1436 PF03453 MoeA N-terminal region (domain I and II) XDD1_1436 PF00994 Probable molybdopterin binding domain XDD1_1437 PF06779 Uncharacterised MFS-type transporter YbfB XDD1_1438 PF01227 GTP cyclohydrolase I XDD1_1439 PF04235 Protein of unknown function (DUF418) XDD1_1440 PF02698 DUF218 domain XDD1_1441 PF03949 Malic enzyme, NAD binding domain XDD1_1441 PF00390 Malic enzyme, N-terminal domain XDD1_1442 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XDD1_1442 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region XDD1_1443 PF04172 LrgB-like family XDD1_1444 PF03788 LrgA family XDD1_1445 PF09334 tRNA synthetases class I (M) XDD1_1445 PF01588 Putative tRNA binding domain XDD1_1446 PF10609 NUBPL iron-transfer P-loop NTPase XDD1_1447 PF00485 Phosphoribulokinase / Uridine kinase family XDD1_1448 PF00692 dUTPase XDD1_1449 PF05170 AsmA family XDD1_1455 PF13592 Winged helix-turn helix XDD1_1455 PF13358 DDE superfamily endonuclease XDD1_1463 PF13936 Helix-turn-helix domain XDD1_1463 PF00665 Integrase core domain XDD1_1465 PF01027 Inhibitor of apoptosis-promoting Bax1 XDD1_1466 PF02391 MoaE protein XDD1_1467 PF02597 ThiS family XDD1_1468 PF01967 MoaC family XDD1_1469 PF04055 Radical SAM superfamily XDD1_1469 PF06463 Molybdenum Cofactor Synthesis C XDD1_1470 PF01933 Uncharacterised protein family UPF0052 XDD1_1471 PF02151 UvrB/uvrC motif XDD1_1471 PF17757 UvrB interaction domain XDD1_1471 PF04851 Type III restriction enzyme, res subunit XDD1_1471 PF12344 Ultra-violet resistance protein B XDD1_1471 PF00271 Helicase conserved C-terminal domain XDD1_1473 PF08241 Methyltransferase domain XDD1_1474 PF00155 Aminotransferase class I and II XDD1_1475 PF04055 Radical SAM superfamily XDD1_1475 PF06968 Biotin and Thiamin Synthesis associated domain XDD1_1476 PF00202 Aminotransferase class-III XDD1_1482 PF05638 Type VI secretion system effector, Hcp XDD1_1491 PF03527 RHS protein XDD1_1491 PF05593 RHS Repeat XDD1_1493 PF08845 Toxin SymE, type I toxin-antitoxin system XDD1_1494 PF01381 Helix-turn-helix XDD1_1495 PF01807 CHC2 zinc finger XDD1_1495 PF10410 DnaB-helicase binding domain of primase XDD1_1495 PF08275 DNA primase catalytic core, N-terminal domain XDD1_1496 PF00589 Phage integrase family XDD1_1496 PF13495 Phage integrase, N-terminal SAM-like domain XDD1_1499 PF13358 DDE superfamily endonuclease XDD1_1508 PF01209 ubiE/COQ5 methyltransferase family XDD1_1509 PF00294 pfkB family carbohydrate kinase XDD1_1512 PF13358 DDE superfamily endonuclease XDD1_1512 PF13592 Winged helix-turn helix XDD1_1517 PF03471 Transporter associated domain XDD1_1517 PF00571 CBS domain XDD1_1517 PF03741 Integral membrane protein TerC family XDD1_1518 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XDD1_1518 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XDD1_1520 PF00465 Iron-containing alcohol dehydrogenase XDD1_1521 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XDD1_1521 PF01502 Phosphoribosyl-AMP cyclohydrolase XDD1_1522 PF00977 Histidine biosynthesis protein XDD1_1523 PF00977 Histidine biosynthesis protein XDD1_1524 PF00117 Glutamine amidotransferase class-I XDD1_1525 PF00475 Imidazoleglycerol-phosphate dehydratase XDD1_1526 PF00155 Aminotransferase class I and II XDD1_1526 PF00815 Histidinol dehydrogenase XDD1_1527 PF00815 Histidinol dehydrogenase XDD1_1527 PF00155 Aminotransferase class I and II XDD1_1528 PF01634 ATP phosphoribosyltransferase XDD1_1528 PF08029 HisG, C-terminal domain XDD1_1530 PF01370 NAD dependent epimerase/dehydratase family XDD1_1531 PF13417 Glutathione S-transferase, N-terminal domain XDD1_1531 PF00043 Glutathione S-transferase, C-terminal domain XDD1_1532 PF00768 D-alanyl-D-alanine carboxypeptidase XDD1_1532 PF07943 Penicillin-binding protein 5, C-terminal domain XDD1_1534 PF01569 PAP2 superfamily XDD1_1535 PF00462 Glutaredoxin XDD1_1537 PF07214 Protein of unknown function (DUF1418) XDD1_1538 PF10722 Putative bacterial sensory transduction regulator XDD1_1539 PF05958 tRNA (Uracil-5-)-methyltransferase XDD1_1540 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1541 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1542 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_1543 PF00005 ABC transporter XDD1_1544 PF03956 Lysine exporter LysO XDD1_1546 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_1547 PF02687 FtsX-like permease family XDD1_1547 PF12704 MacB-like periplasmic core domain XDD1_1547 PF00005 ABC transporter XDD1_1548 PF00313 'Cold-shock' DNA-binding domain XDD1_1549 PF02617 ATP-dependent Clp protease adaptor protein ClpS XDD1_1550 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_1550 PF02861 Clp amino terminal domain, pathogenicity island component XDD1_1550 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_1550 PF17871 AAA lid domain XDD1_1550 PF07724 AAA domain (Cdc48 subfamily) XDD1_1551 PF01176 Translation initiation factor 1A / IF-1 XDD1_1552 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XDD1_1553 PF00005 ABC transporter XDD1_1553 PF00664 ABC transporter transmembrane region XDD1_1554 PF00005 ABC transporter XDD1_1554 PF00664 ABC transporter transmembrane region XDD1_1555 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_1557 PF01037 Lrp/AsnC ligand binding domain XDD1_1558 PF01580 FtsK/SpoIIIE family XDD1_1558 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XDD1_1558 PF17854 FtsK alpha domain XDD1_1558 PF09397 Ftsk gamma domain XDD1_1559 PF03548 Outer membrane lipoprotein carrier protein LolA XDD1_1560 PF16193 AAA C-terminal domain XDD1_1560 PF12002 MgsA AAA+ ATPase C terminal XDD1_1560 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_1561 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XDD1_1561 PF02403 Seryl-tRNA synthetase N-terminal domain XDD1_1565 PF04055 Radical SAM superfamily XDD1_1566 PF01228 Glycine radical XDD1_1566 PF02901 Pyruvate formate lyase-like XDD1_1567 PF01226 Formate/nitrite transporter XDD1_1568 PF18381 YcaO cyclodehydratase C-terminal domain XDD1_1568 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding XDD1_1569 PF17763 Glutaminase/Asparaginase C-terminal domain XDD1_1569 PF00710 Asparaginase, N-terminal XDD1_1570 PF00266 Aminotransferase class-V XDD1_1571 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XDD1_1572 PF02224 Cytidylate kinase XDD1_1574 PF00575 S1 RNA binding domain XDD1_1575 PF00216 Bacterial DNA-binding protein XDD1_1576 PF03772 Competence protein XDD1_1576 PF00753 Metallo-beta-lactamase superfamily XDD1_1577 PF00664 ABC transporter transmembrane region XDD1_1577 PF00005 ABC transporter XDD1_1578 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XDD1_1579 PF03966 Trm112p-like protein XDD1_1580 PF02348 Cytidylyltransferase XDD1_1581 PF02698 DUF218 domain XDD1_1583 PF03882 MukF winged-helix domain XDD1_1583 PF17193 MukF C-terminal domain XDD1_1583 PF17192 MukF middle domain XDD1_1584 PF04288 MukE-like family XDD1_1585 PF04310 MukB N-terminal XDD1_1585 PF16330 MukB hinge domain XDD1_1586 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) XDD1_1587 PF01471 Putative peptidoglycan binding domain XDD1_1587 PF03734 L,D-transpeptidase catalytic domain XDD1_1588 PF05951 Bacterial protein of unknown function (DUF882) XDD1_1589 PF00753 Metallo-beta-lactamase superfamily XDD1_1590 PF00155 Aminotransferase class I and II XDD1_1591 PF00267 Gram-negative porin XDD1_1592 PF00152 tRNA synthetases class II (D, K and N) XDD1_1592 PF01336 OB-fold nucleic acid binding domain XDD1_1593 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XDD1_1593 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XDD1_1595 PF01433 Peptidase family M1 domain XDD1_1595 PF11940 Domain of unknown function (DUF3458) Ig-like fold XDD1_1595 PF17432 Domain of unknown function (DUF3458_C) ARM repeats XDD1_1596 PF01180 Dihydroorotate dehydrogenase XDD1_1597 PF07126 Cell-division protein ZapC XDD1_1598 PF00111 2Fe-2S iron-sulfur cluster binding domain XDD1_1598 PF03473 MOSC domain XDD1_1598 PF03476 MOSC N-terminal beta barrel domain XDD1_1599 PF01170 Putative RNA methylase family UPF0020 XDD1_1599 PF02926 THUMP domain XDD1_1599 PF10672 S-adenosylmethionine-dependent methyltransferase XDD1_1600 PF16326 ABC transporter C-terminal domain XDD1_1600 PF00005 ABC transporter XDD1_1600 PF12848 ABC transporter XDD1_1601 PF04403 Paraquat-inducible protein A XDD1_1602 PF02470 MlaD protein XDD1_1603 PF03886 ABC-type transport auxiliary lipoprotein component XDD1_1604 PF07977 FabA-like domain XDD1_1605 PF13654 AAA domain XDD1_1605 PF05362 Lon protease (S16) C-terminal proteolytic domain XDD1_1606 PF17414 MatP C-terminal ribbon-helix-helix domain XDD1_1606 PF06303 MatP N-terminal domain XDD1_1607 PF00691 OmpA family XDD1_1607 PF01389 OmpA-like transmembrane domain XDD1_1609 PF03846 Cell division inhibitor SulA XDD1_1618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XDD1_1621 PF06463 Molybdenum Cofactor Synthesis C XDD1_1621 PF04055 Radical SAM superfamily XDD1_1626 PF12951 Passenger-associated-transport-repeat XDD1_1634 PF12805 FUSC-like inner membrane protein yccS XDD1_1635 PF00580 UvrD/REP helicase N-terminal domain XDD1_1635 PF12462 DNA helicase IV / RNA helicase N terminal XDD1_1635 PF13361 UvrD-like helicase C-terminal domain XDD1_1636 PF13380 CoA binding domain XDD1_1637 PF08755 Hemimethylated DNA-binding protein YccV like XDD1_1638 PF00708 Acylphosphatase XDD1_1639 PF04358 DsrC like protein XDD1_1648 PF03354 Phage Terminase XDD1_1649 PF13693 Winged helix-turn-helix DNA-binding XDD1_1655 PF02803 Thiolase, C-terminal domain XDD1_1655 PF00108 Thiolase, N-terminal domain XDD1_1656 PF00248 Aldo/keto reductase family XDD1_1661 PF00144 Beta-lactamase XDD1_1662 PF00324 Amino acid permease XDD1_1669 PF08361 MAATS-type transcriptional repressor, C-terminal region XDD1_1669 PF00440 Bacterial regulatory proteins, tetR family XDD1_1670 PF03466 LysR substrate binding domain XDD1_1670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1671 PF00892 EamA-like transporter family XDD1_1674 PF00072 Response regulator receiver domain XDD1_1674 PF00196 Bacterial regulatory proteins, luxR family XDD1_1675 PF08459 UvrC Helix-hairpin-helix N-terminal XDD1_1675 PF02151 UvrB/uvrC motif XDD1_1675 PF01541 GIY-YIG catalytic domain XDD1_1676 PF01066 CDP-alcohol phosphatidyltransferase XDD1_1678 PF13356 Arm DNA-binding domain XDD1_1678 PF00589 Phage integrase family XDD1_1683 PF05638 Type VI secretion system effector, Hcp XDD1_1694 PF03354 Phage Terminase XDD1_1695 PF13693 Winged helix-turn-helix DNA-binding XDD1_1699 PF05360 yiaA/B two helix domain XDD1_1700 PF00717 Peptidase S24-like XDD1_1700 PF01381 Helix-turn-helix XDD1_1705 PF00975 Thioesterase domain XDD1_1707 PF06821 Serine hydrolase XDD1_1709 PF01070 FMN-dependent dehydrogenase XDD1_1711 PF02567 Phenazine biosynthesis-like protein XDD1_1713 PF01810 LysE type translocator XDD1_1715 PF13358 DDE superfamily endonuclease XDD1_1715 PF13592 Winged helix-turn helix XDD1_1717 PF03279 Bacterial lipid A biosynthesis acyltransferase XDD1_1719 PF01435 Peptidase family M48 XDD1_1722 PF07690 Major Facilitator Superfamily XDD1_1723 PF00196 Bacterial regulatory proteins, luxR family XDD1_1723 PF00072 Response regulator receiver domain XDD1_1724 PF07730 Histidine kinase XDD1_1724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_1724 PF05231 MASE1 XDD1_1725 PF07690 Major Facilitator Superfamily XDD1_1726 PF13847 Methyltransferase domain XDD1_1727 PF02659 Putative manganese efflux pump XDD1_1728 PF06173 Protein of unknown function (DUF986) XDD1_1729 PF03613 PTS system mannose/fructose/sorbose family IID component XDD1_1730 PF03609 PTS system sorbose-specific iic component XDD1_1731 PF03830 PTS system sorbose subfamily IIB component XDD1_1731 PF03610 PTS system fructose IIA component XDD1_1732 PF03315 Serine dehydratase beta chain XDD1_1732 PF03313 Serine dehydratase alpha chain XDD1_1733 PF00293 NUDIX domain XDD1_1734 PF04715 Anthranilate synthase component I, N terminal region XDD1_1734 PF00425 chorismate binding enzyme XDD1_1735 PF03701 Uncharacterised protein family (UPF0181) XDD1_1736 PF13995 YebF-like protein XDD1_1737 PF00561 alpha/beta hydrolase fold XDD1_1738 PF06440 DNA polymerase III, theta subunit XDD1_1742 PF00210 Ferritin-like domain XDD1_1743 PF04234 CopC domain XDD1_1744 PF05425 Copper resistance protein D XDD1_1745 PF10709 Protein of unknown function (DUF2511) XDD1_1746 PF13185 GAF domain XDD1_1747 PF04352 ProQ/FINO family XDD1_1747 PF17516 ProQ C-terminal domain XDD1_1748 PF03572 Peptidase family S41 XDD1_1748 PF11818 C-terminal domain of tail specific protease (DUF3340) XDD1_1748 PF00595 PDZ domain XDD1_1748 PF17804 Tail specific protease N-terminal domain XDD1_1749 PF01435 Peptidase family M48 XDD1_1751 PF04307 LexA-binding, inner membrane-associated putative hydrolase XDD1_1755 PF14002 YniB-like protein XDD1_1757 PF00950 ABC 3 transport family XDD1_1758 PF00950 ABC 3 transport family XDD1_1759 PF00005 ABC transporter XDD1_1760 PF01297 Zinc-uptake complex component A periplasmic XDD1_1761 PF01464 Transglycosylase SLT domain XDD1_1763 PF09134 Invasin, domain 3 XDD1_1763 PF07979 Intimin C-type lectin domain XDD1_1763 PF11924 Inverse autotransporter, beta-domain XDD1_1763 PF02369 Bacterial Ig-like domain (group 1) XDD1_1772 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XDD1_1772 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_1772 PF02824 TGS domain XDD1_1772 PF03129 Anticodon binding domain XDD1_1773 PF00707 Translation initiation factor IF-3, C-terminal domain XDD1_1773 PF05198 Translation initiation factor IF-3, N-terminal domain XDD1_1774 PF01632 Ribosomal protein L35 XDD1_1775 PF00453 Ribosomal protein L20 XDD1_1776 PF01409 tRNA synthetases class II core domain (F) XDD1_1776 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XDD1_1777 PF03147 Ferredoxin-fold anticodon binding domain XDD1_1777 PF03483 B3/4 domain XDD1_1777 PF03484 tRNA synthetase B5 domain XDD1_1777 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XDD1_1777 PF01588 Putative tRNA binding domain XDD1_1778 PF00216 Bacterial DNA-binding protein XDD1_1779 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XDD1_1780 PF00535 Glycosyl transferase family 2 XDD1_1781 PF02911 Formyl transferase, C-terminal domain XDD1_1781 PF01370 NAD dependent epimerase/dehydratase family XDD1_1781 PF00551 Formyl transferase XDD1_1782 PF01522 Polysaccharide deacetylase XDD1_1783 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XDD1_1786 PF00877 NlpC/P60 family XDD1_1789 PF00665 Integrase core domain XDD1_1789 PF13936 Helix-turn-helix domain XDD1_1791 PF00501 AMP-binding enzyme XDD1_1791 PF13193 AMP-binding enzyme C-terminal domain XDD1_1791 PF00668 Condensation domain XDD1_1791 PF00550 Phosphopantetheine attachment site XDD1_1792 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XDD1_1792 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XDD1_1796 PF08659 KR domain XDD1_1796 PF00501 AMP-binding enzyme XDD1_1796 PF00550 Phosphopantetheine attachment site XDD1_1796 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_1796 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_1796 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_1796 PF00668 Condensation domain XDD1_1796 PF14765 Polyketide synthase dehydratase XDD1_1796 PF13193 AMP-binding enzyme C-terminal domain XDD1_1797 PF00144 Beta-lactamase XDD1_1798 PF00550 Phosphopantetheine attachment site XDD1_1798 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_1798 PF00668 Condensation domain XDD1_1798 PF00698 Acyl transferase domain XDD1_1798 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_1798 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_1799 PF00975 Thioesterase domain XDD1_1801 PF00501 AMP-binding enzyme XDD1_1801 PF00550 Phosphopantetheine attachment site XDD1_1801 PF13193 AMP-binding enzyme C-terminal domain XDD1_1801 PF00668 Condensation domain XDD1_1802 PF00668 Condensation domain XDD1_1802 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_1802 PF00698 Acyl transferase domain XDD1_1802 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_1802 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_1802 PF00550 Phosphopantetheine attachment site XDD1_1808 PF02675 S-adenosylmethionine decarboxylase XDD1_1809 PF00005 ABC transporter XDD1_1810 PF01032 FecCD transport family XDD1_1811 PF01497 Periplasmic binding protein XDD1_1812 PF05171 Haemin-degrading HemS.ChuX domain XDD1_1813 PF00593 TonB dependent receptor XDD1_1813 PF07715 TonB-dependent Receptor Plug Domain XDD1_1814 PF00793 DAHP synthetase I family XDD1_1815 PF03618 Kinase/pyrophosphorylase XDD1_1819 PF00589 Phage integrase family XDD1_1819 PF13495 Phage integrase, N-terminal SAM-like domain XDD1_1820 PF01807 CHC2 zinc finger XDD1_1820 PF08275 DNA primase catalytic core, N-terminal domain XDD1_1820 PF10410 DnaB-helicase binding domain of primase XDD1_1821 PF01381 Helix-turn-helix XDD1_1825 PF00589 Phage integrase family XDD1_1825 PF13495 Phage integrase, N-terminal SAM-like domain XDD1_1826 PF10410 DnaB-helicase binding domain of primase XDD1_1826 PF08275 DNA primase catalytic core, N-terminal domain XDD1_1826 PF01807 CHC2 zinc finger XDD1_1833 PF00589 Phage integrase family XDD1_1833 PF13495 Phage integrase, N-terminal SAM-like domain XDD1_1834 PF10410 DnaB-helicase binding domain of primase XDD1_1834 PF08275 DNA primase catalytic core, N-terminal domain XDD1_1834 PF01807 CHC2 zinc finger XDD1_1843 PF00391 PEP-utilising enzyme, mobile domain XDD1_1843 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XDD1_1843 PF02896 PEP-utilising enzyme, TIM barrel domain XDD1_1844 PF01594 AI-2E family transporter XDD1_1845 PF02913 FAD linked oxidases, C-terminal domain XDD1_1845 PF01565 FAD binding domain XDD1_1845 PF13183 4Fe-4S dicluster domain XDD1_1846 PF03061 Thioesterase superfamily XDD1_1848 PF03734 L,D-transpeptidase catalytic domain XDD1_1848 PF01476 LysM domain XDD1_1848 PF17969 L,D-transpeptidase C-terminal domain XDD1_1849 PF04728 Lipoprotein leucine-zipper XDD1_1850 PF00224 Pyruvate kinase, barrel domain XDD1_1850 PF02887 Pyruvate kinase, alpha/beta domain XDD1_1851 PF01554 MatE XDD1_1852 PF00677 Lumazine binding domain XDD1_1855 PF07690 Major Facilitator Superfamily XDD1_1856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1856 PF03466 LysR substrate binding domain XDD1_1857 PF00356 Bacterial regulatory proteins, lacI family XDD1_1858 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XDD1_1858 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XDD1_1859 PF00462 Glutaredoxin XDD1_1860 PF00929 Exonuclease XDD1_1861 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XDD1_1862 PF06945 Protein of unknown function (DUF1289) XDD1_1863 PF01047 MarR family XDD1_1864 PF05433 Glycine zipper 2TM domain XDD1_1865 PF03702 Anhydro-N-acetylmuramic acid kinase XDD1_1866 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XDD1_1866 PF01243 Pyridoxamine 5'-phosphate oxidase XDD1_1867 PF01479 S4 domain XDD1_1867 PF00579 tRNA synthetases class I (W and Y) XDD1_1868 PF08543 Phosphomethylpyrimidine kinase XDD1_1870 PF00005 ABC transporter XDD1_1871 PF00005 ABC transporter XDD1_1871 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XDD1_1872 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1872 PF12911 N-terminal TM domain of oligopeptide transport permease C XDD1_1873 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_1874 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_1875 PF00158 Sigma-54 interaction domain XDD1_1875 PF02954 Bacterial regulatory protein, Fis family XDD1_1876 PF04012 PspA/IM30 family XDD1_1877 PF06667 Phage shock protein B XDD1_1878 PF04024 PspC domain XDD1_1879 PF04317 YcjX-like family, DUF463 XDD1_1880 PF05128 Domain of unknown function (DUF697) XDD1_1881 PF00158 Sigma-54 interaction domain XDD1_1881 PF18024 Helix-turn-helix domain XDD1_1884 PF07724 AAA domain (Cdc48 subfamily) XDD1_1884 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_1884 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_1884 PF17871 AAA lid domain XDD1_1894 PF00691 OmpA family XDD1_1894 PF13677 Membrane MotB of proton-channel complex MotA/MotB XDD1_1902 PF16671 Actin cross-linking domain XDD1_1902 PF04717 Type VI secretion system, phage-baseplate injector XDD1_1903 PF08534 Redoxin XDD1_1904 PF01544 CorA-like Mg2+ transporter protein XDD1_1905 PF01171 PP-loop family XDD1_1906 PF00668 Condensation domain XDD1_1906 PF13193 AMP-binding enzyme C-terminal domain XDD1_1906 PF00550 Phosphopantetheine attachment site XDD1_1906 PF00501 AMP-binding enzyme XDD1_1907 PF00550 Phosphopantetheine attachment site XDD1_1907 PF00668 Condensation domain XDD1_1907 PF13193 AMP-binding enzyme C-terminal domain XDD1_1907 PF00501 AMP-binding enzyme XDD1_1908 PF13193 AMP-binding enzyme C-terminal domain XDD1_1908 PF00668 Condensation domain XDD1_1908 PF00550 Phosphopantetheine attachment site XDD1_1908 PF00975 Thioesterase domain XDD1_1908 PF00501 AMP-binding enzyme XDD1_1910 PF00893 Small Multidrug Resistance protein XDD1_1912 PF03466 LysR substrate binding domain XDD1_1912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_1913 PF07690 Major Facilitator Superfamily XDD1_1914 PF17871 AAA lid domain XDD1_1914 PF07724 AAA domain (Cdc48 subfamily) XDD1_1914 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_1914 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_1914 PF02861 Clp amino terminal domain, pathogenicity island component XDD1_1916 PF13195 Protein of unknown function (DUF4011) XDD1_1916 PF13195 Protein of unknown function (DUF4011) XDD1_1916 PF13086 AAA domain XDD1_1916 PF13086 AAA domain XDD1_1916 PF13087 AAA domain XDD1_1916 PF13087 AAA domain XDD1_1917 PF13358 DDE superfamily endonuclease XDD1_1920 PF00171 Aldehyde dehydrogenase family XDD1_1922 PF07729 FCD domain XDD1_1922 PF00392 Bacterial regulatory proteins, gntR family XDD1_1924 PF00202 Aminotransferase class-III XDD1_1926 PF05656 Protein of unknown function (DUF805) XDD1_1927 PF01266 FAD dependent oxidoreductase XDD1_1928 PF05035 2-keto-3-deoxy-galactonokinase XDD1_1929 PF01081 KDPG and KHG aldolase XDD1_1930 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XDD1_1930 PF13378 Enolase C-terminal domain-like XDD1_1931 PF07690 Major Facilitator Superfamily XDD1_1936 PF07690 Major Facilitator Superfamily XDD1_1937 PF13358 DDE superfamily endonuclease XDD1_1937 PF13592 Winged helix-turn helix XDD1_1940 PF07662 Na+ dependent nucleoside transporter C-terminus XDD1_1940 PF01773 Na+ dependent nucleoside transporter N-terminus XDD1_1941 PF00582 Universal stress protein family XDD1_1942 PF00582 Universal stress protein family XDD1_1944 PF04231 Endonuclease I XDD1_1951 PF13358 DDE superfamily endonuclease XDD1_1960 PF00202 Aminotransferase class-III XDD1_1961 PF00593 TonB dependent receptor XDD1_1961 PF07715 TonB-dependent Receptor Plug Domain XDD1_1963 PF04183 IucA / IucC family XDD1_1963 PF06276 Ferric iron reductase FhuF-like transporter XDD1_1964 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XDD1_1964 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XDD1_1965 PF07690 Major Facilitator Superfamily XDD1_1966 PF06276 Ferric iron reductase FhuF-like transporter XDD1_1966 PF04183 IucA / IucC family XDD1_1967 PF03328 HpcH/HpaI aldolase/citrate lyase family XDD1_1968 PF04183 IucA / IucC family XDD1_1968 PF06276 Ferric iron reductase FhuF-like transporter XDD1_1969 PF01497 Periplasmic binding protein XDD1_1970 PF01032 FecCD transport family XDD1_1971 PF01032 FecCD transport family XDD1_1972 PF00005 ABC transporter XDD1_1974 PF03737 Aldolase/RraA XDD1_1975 PF02322 Cytochrome bd terminal oxidase subunit II XDD1_1976 PF01654 Cytochrome bd terminal oxidase subunit I XDD1_1979 PF00440 Bacterial regulatory proteins, tetR family XDD1_1979 PF16295 Tetracyclin repressor-like, C-terminal domain XDD1_1982 PF00012 Hsp70 protein XDD1_1983 PF00155 Aminotransferase class I and II XDD1_1983 PF00392 Bacterial regulatory proteins, gntR family XDD1_1985 PF01278 Omptin family XDD1_1986 PF01266 FAD dependent oxidoreductase XDD1_1989 PF12697 Alpha/beta hydrolase family XDD1_1993 PF02525 Flavodoxin-like fold XDD1_1994 PF12833 Helix-turn-helix domain XDD1_1994 PF06719 AraC-type transcriptional regulator N-terminus XDD1_1995 PF06071 Protein of unknown function (DUF933) XDD1_1995 PF01926 50S ribosome-binding GTPase XDD1_1996 PF01195 Peptidyl-tRNA hydrolase XDD1_1998 PF00657 GDSL-like Lipase/Acylhydrolase XDD1_1998 PF03797 Autotransporter beta-domain XDD1_1999 PF00657 GDSL-like Lipase/Acylhydrolase XDD1_1999 PF03797 Autotransporter beta-domain XDD1_2000 PF14572 Phosphoribosyl synthetase-associated domain XDD1_2000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XDD1_2001 PF00288 GHMP kinases N terminal domain XDD1_2001 PF08544 GHMP kinases C terminal XDD1_2002 PF03550 Outer membrane lipoprotein LolB XDD1_2003 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XDD1_2003 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XDD1_2003 PF01488 Shikimate / quinate 5-dehydrogenase XDD1_2004 PF00472 RF-1 domain XDD1_2004 PF03462 PCRF domain XDD1_2005 PF17827 PrmC N-terminal domain XDD1_2005 PF13847 Methyltransferase domain XDD1_2006 PF13369 Transglutaminase-like superfamily XDD1_2007 PF00793 DAHP synthetase I family XDD1_2008 PF01740 STAS domain XDD1_2008 PF00916 Sulfate permease family XDD1_2009 PF00782 Dual specificity phosphatase, catalytic domain XDD1_2010 PF12146 Serine aminopeptidase, S33 XDD1_2010 PF12147 Putative methyltransferase XDD1_2011 PF01066 CDP-alcohol phosphatidyltransferase XDD1_2012 PF08279 HTH domain XDD1_2012 PF13280 WYL domain XDD1_2013 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XDD1_2018 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_2019 PF02613 Nitrate reductase delta subunit XDD1_2020 PF05638 Type VI secretion system effector, Hcp XDD1_2025 PF07273 Protein of unknown function (DUF1439) XDD1_2026 PF07690 Major Facilitator Superfamily XDD1_2027 PF13302 Acetyltransferase (GNAT) domain XDD1_2028 PF13358 DDE superfamily endonuclease XDD1_2030 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_2030 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_2030 PF07724 AAA domain (Cdc48 subfamily) XDD1_2030 PF17871 AAA lid domain XDD1_2040 PF00691 OmpA family XDD1_2040 PF13677 Membrane MotB of proton-channel complex MotA/MotB XDD1_2049 PF16671 Actin cross-linking domain XDD1_2049 PF04717 Type VI secretion system, phage-baseplate injector XDD1_2051 PF13358 DDE superfamily endonuclease XDD1_2051 PF13592 Winged helix-turn helix XDD1_2052 PF03023 Lipid II flippase MurJ XDD1_2054 PF05746 DALR anticodon binding domain XDD1_2054 PF00750 tRNA synthetases class I (R) XDD1_2054 PF03485 Arginyl tRNA synthetase N terminal domain XDD1_2056 PF03932 CutC family XDD1_2057 PF08003 Protein of unknown function (DUF1698) XDD1_2058 PF13649 Methyltransferase domain XDD1_2059 PF01124 MAPEG family XDD1_2061 PF02938 GAD domain XDD1_2061 PF01336 OB-fold nucleic acid binding domain XDD1_2061 PF00152 tRNA synthetases class II (D, K and N) XDD1_2062 PF00293 NUDIX domain XDD1_2063 PF01709 Transcriptional regulator XDD1_2064 PF02075 Crossover junction endodeoxyribonuclease RuvC XDD1_2065 PF07499 RuvA, C-terminal domain XDD1_2065 PF01330 RuvA N terminal domain XDD1_2066 PF17864 RuvB AAA lid domain XDD1_2066 PF05496 Holliday junction DNA helicase RuvB P-loop domain XDD1_2066 PF05491 RuvB C-terminal winged helix domain XDD1_2069 PF00950 ABC 3 transport family XDD1_2070 PF00005 ABC transporter XDD1_2071 PF01297 Zinc-uptake complex component A periplasmic XDD1_2072 PF08525 Opacity-associated protein A N-terminal motif XDD1_2072 PF01476 LysM domain XDD1_2072 PF01551 Peptidase family M23 XDD1_2073 PF03279 Bacterial lipid A biosynthesis acyltransferase XDD1_2074 PF00224 Pyruvate kinase, barrel domain XDD1_2074 PF02887 Pyruvate kinase, alpha/beta domain XDD1_2075 PF01380 SIS domain XDD1_2075 PF01418 Helix-turn-helix domain, rpiR family XDD1_2077 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XDD1_2077 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XDD1_2078 PF00893 Small Multidrug Resistance protein XDD1_2079 PF00893 Small Multidrug Resistance protein XDD1_2080 PF01042 Endoribonuclease L-PSP XDD1_2081 PF13307 Helicase C-terminal domain XDD1_2081 PF04851 Type III restriction enzyme, res subunit XDD1_2082 PF00814 Glycoprotease family XDD1_2083 PF03843 Outer membrane lipoprotein Slp family XDD1_2084 PF00501 AMP-binding enzyme XDD1_2084 PF13193 AMP-binding enzyme C-terminal domain XDD1_2085 PF00570 HRDC domain XDD1_2085 PF01612 3'-5' exonuclease XDD1_2086 PF03776 Septum formation topological specificity factor MinE XDD1_2087 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XDD1_2088 PF05209 Septum formation inhibitor MinC, N-terminal domain XDD1_2088 PF03775 Septum formation inhibitor MinC, C-terminal domain XDD1_2089 PF05166 YcgL domain XDD1_2090 PF13406 Transglycosylase SLT domain XDD1_2091 PF01557 Fumarylacetoacetate (FAA) hydrolase family XDD1_2092 PF03692 Putative zinc- or iron-chelating domain XDD1_2096 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_2096 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XDD1_2097 PF11739 Dicarboxylate transport XDD1_2098 PF13617 YnbE-like lipoprotein XDD1_2099 PF07027 Protein of unknown function (DUF1318) XDD1_2100 PF02525 Flavodoxin-like fold XDD1_2101 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XDD1_2101 PF00271 Helicase conserved C-terminal domain XDD1_2101 PF04408 Helicase associated domain (HA2) XDD1_2101 PF11898 Domain of unknown function (DUF3418) XDD1_2101 PF00270 DEAD/DEAH box helicase XDD1_2104 PF00577 Outer membrane usher protein XDD1_2104 PF13954 PapC N-terminal domain XDD1_2104 PF13953 PapC C-terminal domain XDD1_2105 PF02753 Pili assembly chaperone PapD, C-terminal domain XDD1_2105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XDD1_2106 PF00419 Fimbrial protein XDD1_2107 PF13520 Amino acid permease XDD1_2109 PF07338 Protein of unknown function (DUF1471) XDD1_2110 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch XDD1_2110 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XDD1_2110 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XDD1_2111 PF02233 NAD(P) transhydrogenase beta subunit XDD1_2113 PF00005 ABC transporter XDD1_2114 PF02687 FtsX-like permease family XDD1_2114 PF00005 ABC transporter XDD1_2114 PF12704 MacB-like periplasmic core domain XDD1_2116 PF00529 HlyD membrane-fusion protein of T1SS XDD1_2116 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_2122 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_2122 PF00589 Phage integrase family XDD1_2128 PF13358 DDE superfamily endonuclease XDD1_2129 PF00325 Bacterial regulatory proteins, crp family XDD1_2129 PF00027 Cyclic nucleotide-binding domain XDD1_2134 PF13358 DDE superfamily endonuclease XDD1_2134 PF13592 Winged helix-turn helix XDD1_2136 PF04055 Radical SAM superfamily XDD1_2138 PF01810 LysE type translocator XDD1_2139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2139 PF03466 LysR substrate binding domain XDD1_2140 PF07690 Major Facilitator Superfamily XDD1_2141 PF13649 Methyltransferase domain XDD1_2144 PF12951 Passenger-associated-transport-repeat XDD1_2144 PF03797 Autotransporter beta-domain XDD1_2144 PF00082 Subtilase family XDD1_2146 PF07690 Major Facilitator Superfamily XDD1_2149 PF00892 EamA-like transporter family XDD1_2151 PF07715 TonB-dependent Receptor Plug Domain XDD1_2151 PF00593 TonB dependent receptor XDD1_2154 PF00202 Aminotransferase class-III XDD1_2159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2159 PF03466 LysR substrate binding domain XDD1_2160 PF04229 GrpB protein XDD1_2161 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XDD1_2162 PF11954 Domain of unknown function (DUF3471) XDD1_2162 PF00144 Beta-lactamase XDD1_2163 PF00085 Thioredoxin XDD1_2165 PF12833 Helix-turn-helix domain XDD1_2165 PF02311 AraC-like ligand binding domain XDD1_2167 PF02666 Phosphatidylserine decarboxylase XDD1_2169 PF00664 ABC transporter transmembrane region XDD1_2169 PF00005 ABC transporter XDD1_2170 PF00106 short chain dehydrogenase XDD1_2171 PF06932 Protein of unknown function (DUF1283) XDD1_2175 PF13358 DDE superfamily endonuclease XDD1_2177 PF07690 Major Facilitator Superfamily XDD1_2179 PF05472 DNA replication terminus site-binding protein (Ter protein) XDD1_2180 PF10415 Fumarase C C-terminus XDD1_2180 PF00206 Lyase XDD1_2181 PF01238 Phosphomannose isomerase type I XDD1_2182 PF06097 Bacterial protein of unknown function (DUF945) XDD1_2183 PF00962 Adenosine/AMP deaminase XDD1_2184 PF13593 SBF-like CPA transporter family (DUF4137) XDD1_2185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XDD1_2185 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XDD1_2186 PF10754 Protein of unknown function (DUF2569) XDD1_2187 PF02508 Rnf-Nqr subunit, membrane protein XDD1_2188 PF04060 Putative Fe-S cluster XDD1_2189 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XDD1_2189 PF13237 4Fe-4S dicluster domain XDD1_2189 PF13375 RnfC Barrel sandwich hybrid domain XDD1_2189 PF10531 SLBB domain XDD1_2190 PF03116 NQR2, RnfD, RnfE family XDD1_2191 PF04205 FMN-binding domain XDD1_2193 PF02508 Rnf-Nqr subunit, membrane protein XDD1_2194 PF10576 Iron-sulfur binding domain of endonuclease III XDD1_2194 PF00633 Helix-hairpin-helix motif XDD1_2194 PF00730 HhH-GPD superfamily base excision DNA repair protein XDD1_2195 PF17876 Cold shock domain XDD1_2195 PF08206 Ribonuclease B OB domain XDD1_2195 PF00773 RNB domain XDD1_2195 PF00575 S1 RNA binding domain XDD1_2197 PF01253 Translation initiation factor SUI1 XDD1_2198 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XDD1_2199 PF18073 Rubredoxin metal binding domain XDD1_2200 PF06305 Lipopolysaccharide assembly protein A domain XDD1_2202 PF00925 GTP cyclohydrolase II XDD1_2203 PF00330 Aconitase family (aconitate hydratase) XDD1_2203 PF00694 Aconitase C-terminal domain XDD1_2206 PF03466 LysR substrate binding domain XDD1_2206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2207 PF08272 Topoisomerase I zinc-ribbon-like XDD1_2207 PF01131 DNA topoisomerase XDD1_2207 PF01751 Toprim domain XDD1_2207 PF01396 Topoisomerase DNA binding C4 zinc finger XDD1_2208 PF10692 Protein of unknown function (DUF2498) XDD1_2209 PF01343 Peptidase family S49 XDD1_2209 PF08496 Peptidase family S49 N-terminal XDD1_2211 PF00106 short chain dehydrogenase XDD1_2212 PF00849 RNA pseudouridylate synthase XDD1_2212 PF01479 S4 domain XDD1_2213 PF01300 Telomere recombination XDD1_2214 PF02811 PHP domain XDD1_2215 PF04715 Anthranilate synthase component I, N terminal region XDD1_2215 PF00425 chorismate binding enzyme XDD1_2216 PF00117 Glutamine amidotransferase class-I XDD1_2217 PF02885 Glycosyl transferase family, helical bundle domain XDD1_2217 PF00591 Glycosyl transferase family, a/b domain XDD1_2218 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XDD1_2218 PF00218 Indole-3-glycerol phosphate synthase XDD1_2219 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_2220 PF00290 Tryptophan synthase alpha chain XDD1_2221 PF03922 OmpW family XDD1_2223 PF01740 STAS domain XDD1_2223 PF00916 Sulfate permease family XDD1_2224 PF04279 Intracellular septation protein A XDD1_2225 PF03061 Thioesterase superfamily XDD1_2226 PF03544 Gram-negative bacterial TonB protein C-terminal XDD1_2228 PF13396 Phospholipase_D-nuclease N-terminal XDD1_2228 PF13091 PLD-like domain XDD1_2229 PF04269 Protein of unknown function, DUF440 XDD1_2230 PF00005 ABC transporter XDD1_2230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XDD1_2231 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XDD1_2231 PF00005 ABC transporter XDD1_2232 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_2232 PF12911 N-terminal TM domain of oligopeptide transport permease C XDD1_2233 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_2234 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_2235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_2236 PF00171 Aldehyde dehydrogenase family XDD1_2236 PF00465 Iron-containing alcohol dehydrogenase XDD1_2237 PF00265 Thymidine kinase XDD1_2238 PF00816 H-NS histone family XDD1_2239 PF01370 NAD dependent epimerase/dehydratase family XDD1_2240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XDD1_2240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XDD1_2240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XDD1_2241 PF00483 Nucleotidyl transferase XDD1_2242 PF02810 SEC-C motif XDD1_2243 PF00551 Formyl transferase XDD1_2243 PF01842 ACT domain XDD1_2246 PF03372 Endonuclease/Exonuclease/phosphatase family XDD1_2247 PF01131 DNA topoisomerase XDD1_2247 PF01751 Toprim domain XDD1_2248 PF00586 AIR synthase related protein, N-terminal domain XDD1_2248 PF02769 AIR synthase related protein, C-terminal domain XDD1_2249 PF00881 Nitroreductase family XDD1_2250 PF01343 Peptidase family S49 XDD1_2251 PF17763 Glutaminase/Asparaginase C-terminal domain XDD1_2251 PF00710 Asparaginase, N-terminal XDD1_2252 PF07023 Protein of unknown function (DUF1315) XDD1_2253 PF01641 SelR domain XDD1_2254 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XDD1_2254 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XDD1_2255 PF01263 Aldose 1-epimerase XDD1_2256 PF01168 Alanine racemase, N-terminal domain XDD1_2256 PF00842 Alanine racemase, C-terminal domain XDD1_2257 PF01266 FAD dependent oxidoreductase XDD1_2258 PF00392 Bacterial regulatory proteins, gntR family XDD1_2258 PF07840 FadR C-terminal domain XDD1_2259 PF06450 Bacterial Na+/H+ antiporter B (NhaB) XDD1_2260 PF02600 Disulfide bond formation protein DsbB XDD1_2268 PF07690 Major Facilitator Superfamily XDD1_2269 PF13592 Winged helix-turn helix XDD1_2269 PF13358 DDE superfamily endonuclease XDD1_2274 PF13520 Amino acid permease XDD1_2275 PF01276 Orn/Lys/Arg decarboxylase, major domain XDD1_2275 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XDD1_2275 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XDD1_2281 PF13193 AMP-binding enzyme C-terminal domain XDD1_2281 PF00975 Thioesterase domain XDD1_2281 PF00668 Condensation domain XDD1_2281 PF00550 Phosphopantetheine attachment site XDD1_2281 PF00501 AMP-binding enzyme XDD1_2282 PF00550 Phosphopantetheine attachment site XDD1_2282 PF07993 Male sterility protein XDD1_2282 PF00668 Condensation domain XDD1_2282 PF00501 AMP-binding enzyme XDD1_2282 PF13193 AMP-binding enzyme C-terminal domain XDD1_2283 PF00668 Condensation domain XDD1_2283 PF00501 AMP-binding enzyme XDD1_2283 PF00975 Thioesterase domain XDD1_2283 PF13193 AMP-binding enzyme C-terminal domain XDD1_2283 PF00550 Phosphopantetheine attachment site XDD1_2284 PF00282 Pyridoxal-dependent decarboxylase conserved domain XDD1_2286 PF00668 Condensation domain XDD1_2286 PF13193 AMP-binding enzyme C-terminal domain XDD1_2286 PF00501 AMP-binding enzyme XDD1_2286 PF00975 Thioesterase domain XDD1_2286 PF00550 Phosphopantetheine attachment site XDD1_2287 PF13193 AMP-binding enzyme C-terminal domain XDD1_2287 PF00501 AMP-binding enzyme XDD1_2287 PF00668 Condensation domain XDD1_2287 PF00550 Phosphopantetheine attachment site XDD1_2288 PF00975 Thioesterase domain XDD1_2288 PF00668 Condensation domain XDD1_2288 PF13193 AMP-binding enzyme C-terminal domain XDD1_2288 PF00501 AMP-binding enzyme XDD1_2288 PF00550 Phosphopantetheine attachment site XDD1_2289 PF00282 Pyridoxal-dependent decarboxylase conserved domain XDD1_2290 PF00296 Luciferase-like monooxygenase XDD1_2291 PF00107 Zinc-binding dehydrogenase XDD1_2291 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_2293 PF00005 ABC transporter XDD1_2293 PF00664 ABC transporter transmembrane region XDD1_2294 PF00474 Sodium:solute symporter family XDD1_2296 PF14850 DNA-binding domain of Proline dehydrogenase XDD1_2296 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XDD1_2296 PF01619 Proline dehydrogenase XDD1_2296 PF00171 Aldehyde dehydrogenase family XDD1_2297 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_2298 PF04545 Sigma-70, region 4 XDD1_2298 PF04539 Sigma-70 region 3 XDD1_2298 PF04542 Sigma-70 region 2 XDD1_2299 PF00669 Bacterial flagellin N-terminal helical region XDD1_2299 PF00700 Bacterial flagellin C-terminal helical region XDD1_2301 PF02465 Flagellar hook-associated protein 2 N-terminus XDD1_2301 PF07196 Flagellin hook IN motif XDD1_2301 PF07195 Flagellar hook-associated protein 2 C-terminus XDD1_2302 PF02561 Flagellar protein FliS XDD1_2303 PF05400 Flagellar protein FliT XDD1_2304 PF13358 DDE superfamily endonuclease XDD1_2307 PF04221 RelB antitoxin XDD1_2308 PF02049 Flagellar hook-basal body complex protein FliE XDD1_2310 PF01514 Secretory protein of YscJ/FliF family XDD1_2310 PF08345 Flagellar M-ring protein C-terminal XDD1_2311 PF01706 FliG C-terminal domain XDD1_2311 PF14842 FliG N-terminal domain XDD1_2311 PF14841 FliG middle domain XDD1_2312 PF02108 Flagellar assembly protein FliH XDD1_2313 PF18269 T3SS EscN ATPase C-terminal domain XDD1_2313 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XDD1_2314 PF02050 Flagellar FliJ protein XDD1_2315 PF02120 Flagellar hook-length control protein FliK XDD1_2317 PF03748 Flagellar basal body-associated protein FliL XDD1_2318 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XDD1_2318 PF02154 Flagellar motor switch protein FliM XDD1_2319 PF16973 Flagellar motor switch protein FliN N-terminal XDD1_2319 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term XDD1_2320 PF04347 Flagellar biosynthesis protein, FliO XDD1_2321 PF00813 FliP family XDD1_2322 PF01313 Bacterial export proteins, family 3 XDD1_2323 PF01311 Bacterial export proteins, family 1 XDD1_2328 PF12728 Helix-turn-helix domain XDD1_2329 PF00669 Bacterial flagellin N-terminal helical region XDD1_2330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XDD1_2330 PF00460 Flagella basal body rod protein XDD1_2331 PF10135 Rod binding protein XDD1_2331 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XDD1_2332 PF02119 Flagellar P-ring protein XDD1_2333 PF02107 Flagellar L-ring protein XDD1_2334 PF00460 Flagella basal body rod protein XDD1_2334 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XDD1_2335 PF00460 Flagella basal body rod protein XDD1_2335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XDD1_2336 PF07559 Flagellar basal body protein FlaE XDD1_2336 PF00460 Flagella basal body rod protein XDD1_2336 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XDD1_2337 PF13861 FlgD Tudor-like domain XDD1_2337 PF13860 FlgD Ig-like domain XDD1_2337 PF03963 Flagellar hook capping protein - N-terminal region XDD1_2338 PF00460 Flagella basal body rod protein XDD1_2338 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XDD1_2339 PF00460 Flagella basal body rod protein XDD1_2340 PF13144 Chaperone for flagella basal body P-ring formation XDD1_2340 PF17656 FlgA N-terminal domain XDD1_2341 PF04316 Anti-sigma-28 factor, FlgM XDD1_2342 PF05130 FlgN protein XDD1_2343 PF13358 DDE superfamily endonuclease XDD1_2344 PF00419 Fimbrial protein XDD1_2345 PF13954 PapC N-terminal domain XDD1_2345 PF13953 PapC C-terminal domain XDD1_2345 PF00577 Outer membrane usher protein XDD1_2346 PF02753 Pili assembly chaperone PapD, C-terminal domain XDD1_2346 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XDD1_2349 PF13358 DDE superfamily endonuclease XDD1_2349 PF13592 Winged helix-turn helix XDD1_2352 PF00771 FHIPEP family XDD1_2353 PF01312 FlhB HrpN YscU SpaS Family XDD1_2354 PF01235 Sodium:alanine symporter family XDD1_2355 PF02796 Helix-turn-helix domain of resolvase XDD1_2355 PF00239 Resolvase, N terminal domain XDD1_2359 PF04717 Type VI secretion system, phage-baseplate injector XDD1_2366 PF00561 alpha/beta hydrolase fold XDD1_2367 PF04344 Chemotaxis phosphatase, CheZ XDD1_2368 PF00072 Response regulator receiver domain XDD1_2369 PF01339 CheB methylesterase XDD1_2369 PF00072 Response regulator receiver domain XDD1_2370 PF03705 CheR methyltransferase, all-alpha domain XDD1_2370 PF01739 CheR methyltransferase, SAM binding domain XDD1_2371 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XDD1_2371 PF02203 Tar ligand binding domain homologue XDD1_2371 PF00672 HAMP domain XDD1_2372 PF00672 HAMP domain XDD1_2372 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XDD1_2372 PF02203 Tar ligand binding domain homologue XDD1_2373 PF01584 CheW-like domain XDD1_2374 PF01584 CheW-like domain XDD1_2374 PF02895 Signal transducing histidine kinase, homodimeric domain XDD1_2374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2374 PF01627 Hpt domain XDD1_2374 PF09078 CheY binding XDD1_2375 PF13677 Membrane MotB of proton-channel complex MotA/MotB XDD1_2375 PF00691 OmpA family XDD1_2376 PF01618 MotA/TolQ/ExbB proton channel family XDD1_2377 PF05280 Flagellar transcriptional activator (FlhC) XDD1_2378 PF05247 Flagellar transcriptional activator (FlhD) XDD1_2379 PF00690 Cation transporter/ATPase, N-terminus XDD1_2379 PF00689 Cation transporting ATPase, C-terminus XDD1_2380 PF02308 MgtC family XDD1_2381 PF00313 'Cold-shock' DNA-binding domain XDD1_2382 PF10777 Inner membrane protein YlaC XDD1_2384 PF01979 Amidohydrolase family XDD1_2385 PF13991 BssS protein family XDD1_2386 PF00196 Bacterial regulatory proteins, luxR family XDD1_2386 PF00072 Response regulator receiver domain XDD1_2392 PF02508 Rnf-Nqr subunit, membrane protein XDD1_2393 PF00117 Glutamine amidotransferase class-I XDD1_2393 PF02540 NAD synthase XDD1_2393 PF00958 GMP synthase C terminal domain XDD1_2394 PF00571 CBS domain XDD1_2394 PF00478 IMP dehydrogenase / GMP reductase domain XDD1_2395 PF02601 Exonuclease VII, large subunit XDD1_2395 PF13742 OB-fold nucleic acid binding domain XDD1_2399 PF13358 DDE superfamily endonuclease XDD1_2399 PF13592 Winged helix-turn helix XDD1_2401 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XDD1_2401 PF00326 Prolyl oligopeptidase family XDD1_2405 PF01515 Phosphate acetyl/butaryl transferase XDD1_2405 PF03949 Malic enzyme, NAD binding domain XDD1_2405 PF00390 Malic enzyme, N-terminal domain XDD1_2408 PF00072 Response regulator receiver domain XDD1_2408 PF00196 Bacterial regulatory proteins, luxR family XDD1_2409 PF03960 ArsC family XDD1_2410 PF07687 Peptidase dimerisation domain XDD1_2410 PF01546 Peptidase family M20/M25/M40 XDD1_2411 PF02557 D-alanyl-D-alanine carboxypeptidase XDD1_2412 PF17176 tRNA-binding domain XDD1_2412 PF08351 Domain of unknown function (DUF1726) XDD1_2412 PF05127 Helicase XDD1_2412 PF13718 GNAT acetyltransferase 2 XDD1_2413 PF04284 Protein of unknown function (DUF441) XDD1_2414 PF01259 SAICAR synthetase XDD1_2415 PF06804 NlpB/DapX lipoprotein XDD1_2416 PF00701 Dihydrodipicolinate synthetase family XDD1_2417 PF01842 ACT domain XDD1_2420 PF00578 AhpC/TSA family XDD1_2421 PF01594 AI-2E family transporter XDD1_2422 PF07720 Tetratricopeptide repeat XDD1_2422 PF01435 Peptidase family M48 XDD1_2423 PF03960 ArsC family XDD1_2424 PF00308 Bacterial dnaA protein XDD1_2426 PF00860 Permease family XDD1_2428 PF02769 AIR synthase related protein, C-terminal domain XDD1_2428 PF00586 AIR synthase related protein, N-terminal domain XDD1_2429 PF00551 Formyl transferase XDD1_2430 PF13302 Acetyltransferase (GNAT) domain XDD1_2431 PF13089 Polyphosphate kinase N-terminal domain XDD1_2431 PF17941 Polyphosphate kinase C-terminal domain 1 XDD1_2431 PF13090 Polyphosphate kinase C-terminal domain 2 XDD1_2431 PF02503 Polyphosphate kinase middle domain XDD1_2432 PF02541 Ppx/GppA phosphatase family XDD1_2433 PF11119 Protein of unknown function (DUF2633) XDD1_2434 PF01769 Divalent cation transporter XDD1_2434 PF00571 CBS domain XDD1_2434 PF03448 MgtE intracellular N domain XDD1_2436 PF00425 chorismate binding enzyme XDD1_2436 PF00117 Glutamine amidotransferase class-I XDD1_2437 PF00857 Isochorismatase family XDD1_2438 PF00106 short chain dehydrogenase XDD1_2441 PF00005 ABC transporter XDD1_2442 PF08402 TOBE domain XDD1_2442 PF00005 ABC transporter XDD1_2444 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XDD1_2446 PF05114 Protein of unknown function (DUF692) XDD1_2452 PF13193 AMP-binding enzyme C-terminal domain XDD1_2452 PF00501 AMP-binding enzyme XDD1_2454 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XDD1_2455 PF00873 AcrB/AcrD/AcrF family XDD1_2456 PF00873 AcrB/AcrD/AcrF family XDD1_2457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2457 PF00672 HAMP domain XDD1_2457 PF00512 His Kinase A (phospho-acceptor) domain XDD1_2458 PF00486 Transcriptional regulatory protein, C terminal XDD1_2458 PF00072 Response regulator receiver domain XDD1_2459 PF07690 Major Facilitator Superfamily XDD1_2460 PF07411 Domain of unknown function (DUF1508) XDD1_2462 PF01791 DeoC/LacD family aldolase XDD1_2463 PF08543 Phosphomethylpyrimidine kinase XDD1_2464 PF00313 'Cold-shock' DNA-binding domain XDD1_2465 PF00324 Amino acid permease XDD1_2467 PF12833 Helix-turn-helix domain XDD1_2467 PF06445 GyrI-like small molecule binding domain XDD1_2468 PF01510 N-acetylmuramoyl-L-alanine amidase XDD1_2469 PF01235 Sodium:alanine symporter family XDD1_2473 PF00180 Isocitrate/isopropylmalate dehydrogenase XDD1_2474 PF00849 RNA pseudouridylate synthase XDD1_2475 PF00293 NUDIX domain XDD1_2477 PF04356 Protein of unknown function (DUF489) XDD1_2478 PF00206 Lyase XDD1_2478 PF08328 Adenylosuccinate lyase C-terminal XDD1_2479 PF13358 DDE superfamily endonuclease XDD1_2480 PF00486 Transcriptional regulatory protein, C terminal XDD1_2480 PF00072 Response regulator receiver domain XDD1_2481 PF08918 PhoQ Sensor XDD1_2481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2482 PF08007 Cupin superfamily protein XDD1_2483 PF01546 Peptidase family M20/M25/M40 XDD1_2483 PF07687 Peptidase dimerisation domain XDD1_2484 PF02146 Sir2 family XDD1_2485 PF12704 MacB-like periplasmic core domain XDD1_2485 PF02687 FtsX-like permease family XDD1_2486 PF00005 ABC transporter XDD1_2487 PF12704 MacB-like periplasmic core domain XDD1_2487 PF02687 FtsX-like permease family XDD1_2488 PF03461 TRCF domain XDD1_2488 PF02559 CarD-like/TRCF domain XDD1_2488 PF00271 Helicase conserved C-terminal domain XDD1_2488 PF17757 UvrB interaction domain XDD1_2488 PF00270 DEAD/DEAH box helicase XDD1_2491 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_2492 PF00933 Glycosyl hydrolase family 3 N terminal domain XDD1_2493 PF01636 Phosphotransferase enzyme family XDD1_2494 PF13036 Peptidoglycan-synthase activator LpoB XDD1_2495 PF01230 HIT domain XDD1_2496 PF01026 TatD related DNase XDD1_2497 PF09115 DNA polymerase III, delta subunit, C terminal XDD1_2498 PF02223 Thymidylate kinase XDD1_2499 PF02618 YceG-like family XDD1_2500 PF01063 Amino-transferase class IV XDD1_2501 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_2501 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_2502 PF00550 Phosphopantetheine attachment site XDD1_2504 PF00698 Acyl transferase domain XDD1_2505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XDD1_2505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XDD1_2506 PF02504 Fatty acid synthesis protein XDD1_2507 PF01783 Ribosomal L32p protein family XDD1_2508 PF02620 Large ribosomal RNA subunit accumulation protein YceD XDD1_2509 PF02545 Maf-like protein XDD1_2510 PF01479 S4 domain XDD1_2510 PF00849 RNA pseudouridylate synthase XDD1_2511 PF00575 S1 RNA binding domain XDD1_2511 PF10150 Ribonuclease E/G family XDD1_2511 PF12111 Polyribonucleotide phosphorylase C terminal XDD1_2512 PF13460 NAD(P)H-binding XDD1_2513 PF04363 Protein of unknown function (DUF496) XDD1_2514 PF00929 Exonuclease XDD1_2514 PF08411 Exonuclease C-terminal XDD1_2515 PF01565 FAD binding domain XDD1_2515 PF09330 D-lactate dehydrogenase, membrane binding XDD1_2516 PF13520 Amino acid permease XDD1_2517 PF07715 TonB-dependent Receptor Plug Domain XDD1_2517 PF00593 TonB dependent receptor XDD1_2518 PF00005 ABC transporter XDD1_2518 PF08402 TOBE domain XDD1_2519 PF01032 FecCD transport family XDD1_2521 PF00324 Amino acid permease XDD1_2522 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2522 PF03466 LysR substrate binding domain XDD1_2524 PF03601 Conserved hypothetical protein 698 XDD1_2525 PF01261 Xylose isomerase-like TIM barrel XDD1_2526 PF00294 pfkB family carbohydrate kinase XDD1_2527 PF09297 NADH pyrophosphatase zinc ribbon domain XDD1_2527 PF00293 NUDIX domain XDD1_2527 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain XDD1_2528 PF03222 Tryptophan/tyrosine permease family XDD1_2529 PF09285 Elongation factor P, C-terminal XDD1_2529 PF08207 Elongation factor P (EF-P) KOW-like domain XDD1_2529 PF01132 Elongation factor P (EF-P) OB domain XDD1_2533 PF01569 PAP2 superfamily XDD1_2535 PF00877 NlpC/P60 family XDD1_2536 PF13989 YejG-like protein XDD1_2537 PF07690 Major Facilitator Superfamily XDD1_2538 PF00849 RNA pseudouridylate synthase XDD1_2538 PF01479 S4 domain XDD1_2539 PF00271 Helicase conserved C-terminal domain XDD1_2539 PF04851 Type III restriction enzyme, res subunit XDD1_2540 PF01386 Ribosomal L25p family XDD1_2541 PF04245 37-kD nucleoid-associated bacterial protein XDD1_2542 PF07208 Protein of unknown function (DUF1414) XDD1_2543 PF00884 Sulfatase XDD1_2543 PF11893 Domain of unknown function (DUF3413) XDD1_2546 PF13358 DDE superfamily endonuclease XDD1_2551 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading XDD1_2551 PF18416 N-acetylglucosamine binding protein domain 2 XDD1_2552 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XDD1_2555 PF01510 N-acetylmuramoyl-L-alanine amidase XDD1_2556 PF00268 Ribonucleotide reductase, small chain XDD1_2557 PF03477 ATP cone domain XDD1_2557 PF02867 Ribonucleotide reductase, barrel domain XDD1_2557 PF00317 Ribonucleotide reductase, all-alpha domain XDD1_2559 PF00521 DNA gyrase/topoisomerase IV, subunit A XDD1_2559 PF03989 DNA gyrase C-terminal domain, beta-propeller XDD1_2560 PF00072 Response regulator receiver domain XDD1_2560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2560 PF09456 RcsC Alpha-Beta-Loop (ABL) XDD1_2560 PF00512 His Kinase A (phospho-acceptor) domain XDD1_2561 PF00072 Response regulator receiver domain XDD1_2561 PF00196 Bacterial regulatory proteins, luxR family XDD1_2562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2562 PF16359 RcsD-ABL domain XDD1_2562 PF01627 Hpt domain XDD1_2564 PF03222 Tryptophan/tyrosine permease family XDD1_2565 PF07437 YfaZ precursor XDD1_2566 PF00501 AMP-binding enzyme XDD1_2566 PF13193 AMP-binding enzyme C-terminal domain XDD1_2567 PF13378 Enolase C-terminal domain-like XDD1_2568 PF00378 Enoyl-CoA hydratase/isomerase XDD1_2569 PF12697 Alpha/beta hydrolase family XDD1_2570 PF16582 Middle domain of thiamine pyrophosphate XDD1_2570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XDD1_2570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XDD1_2571 PF00425 chorismate binding enzyme XDD1_2573 PF14883 Hypothetical glycosyl hydrolase family 13 XDD1_2573 PF01522 Polysaccharide deacetylase XDD1_2574 PF00535 Glycosyl transferase family 2 XDD1_2576 PF13689 YfiR/HmsC-like XDD1_2577 PF17152 Periplasmic sensor domain XDD1_2577 PF00990 Diguanylate cyclase, GGDEF domain XDD1_2578 PF00691 OmpA family XDD1_2579 PF00563 EAL domain XDD1_2579 PF12792 CSS motif domain associated with EAL XDD1_2582 PF02028 BCCT, betaine/carnitine/choline family transporter XDD1_2583 PF00361 Proton-conducting membrane transporter XDD1_2584 PF00361 Proton-conducting membrane transporter XDD1_2585 PF00361 Proton-conducting membrane transporter XDD1_2585 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XDD1_2586 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XDD1_2587 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XDD1_2588 PF12838 4Fe-4S dicluster domain XDD1_2589 PF00146 NADH dehydrogenase XDD1_2590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XDD1_2590 PF01568 Molydopterin dinucleotide binding domain XDD1_2590 PF00384 Molybdopterin oxidoreductase XDD1_2590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XDD1_2591 PF10531 SLBB domain XDD1_2591 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XDD1_2591 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XDD1_2593 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XDD1_2593 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XDD1_2594 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XDD1_2595 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XDD1_2596 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2596 PF03466 LysR substrate binding domain XDD1_2597 PF00155 Aminotransferase class I and II XDD1_2598 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_2598 PF01411 tRNA synthetases class II (A) XDD1_2600 PF03600 Citrate transporter XDD1_2600 PF02080 TrkA-C domain XDD1_2601 PF13419 Haloacid dehalogenase-like hydrolase XDD1_2602 PF04217 Protein of unknown function, DUF412 XDD1_2603 PF00871 Acetokinase family XDD1_2604 PF07085 DRTGG domain XDD1_2604 PF01515 Phosphate acetyl/butaryl transferase XDD1_2606 PF00550 Phosphopantetheine attachment site XDD1_2606 PF00668 Condensation domain XDD1_2606 PF13193 AMP-binding enzyme C-terminal domain XDD1_2606 PF00501 AMP-binding enzyme XDD1_2608 PF13358 DDE superfamily endonuclease XDD1_2615 PF13358 DDE superfamily endonuclease XDD1_2617 PF13356 Arm DNA-binding domain XDD1_2617 PF14659 Phage integrase, N-terminal SAM-like domain XDD1_2617 PF00589 Phage integrase family XDD1_2618 PF04333 MlaA lipoprotein XDD1_2619 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XDD1_2620 PF04175 Protein of unknown function (DUF406) XDD1_2621 PF00108 Thiolase, N-terminal domain XDD1_2621 PF02803 Thiolase, C-terminal domain XDD1_2622 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XDD1_2622 PF00378 Enoyl-CoA hydratase/isomerase XDD1_2622 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XDD1_2623 PF00300 Histidine phosphatase superfamily (branch 1) XDD1_2624 PF01713 Smr domain XDD1_2625 PF01979 Amidohydrolase family XDD1_2626 PF00491 Arginase family XDD1_2627 PF07702 UTRA domain XDD1_2627 PF00392 Bacterial regulatory proteins, gntR family XDD1_2628 PF17392 Urocanase C-terminal domain XDD1_2628 PF01175 Urocanase Rossmann-like domain XDD1_2628 PF17391 Urocanase N-terminal domain XDD1_2629 PF00221 Aromatic amino acid lyase XDD1_2630 PF00324 Amino acid permease XDD1_2631 PF05175 Methyltransferase small domain XDD1_2633 PF01264 Chorismate synthase XDD1_2634 PF01925 Sulfite exporter TauE/SafE XDD1_2635 PF04315 Elongation factor P hydroxylase XDD1_2636 PF08891 YfcL protein XDD1_2638 PF00583 Acetyltransferase (GNAT) family XDD1_2639 PF05430 S-adenosyl-L-methionine-dependent methyltransferase XDD1_2639 PF01266 FAD dependent oxidoreductase XDD1_2640 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_2640 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_2641 PF01970 Tripartite tricarboxylate transporter TctA family XDD1_2645 PF00072 Response regulator receiver domain XDD1_2645 PF00486 Transcriptional regulatory protein, C terminal XDD1_2646 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2646 PF08521 Two-component sensor kinase N-terminal XDD1_2646 PF00512 His Kinase A (phospho-acceptor) domain XDD1_2648 PF12833 Helix-turn-helix domain XDD1_2649 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XDD1_2649 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_2649 PF11890 Domain of unknown function (DUF3410) XDD1_2650 PF01118 Semialdehyde dehydrogenase, NAD binding domain XDD1_2650 PF02774 Semialdehyde dehydrogenase, dimerisation domain XDD1_2651 PF01416 tRNA pseudouridine synthase XDD1_2652 PF09335 SNARE associated Golgi protein XDD1_2653 PF01039 Carboxyl transferase domain XDD1_2653 PF17848 Acetyl-coA carboxylase zinc finger domain XDD1_2654 PF02875 Mur ligase family, glutamate ligase domain XDD1_2654 PF08245 Mur ligase middle domain XDD1_2655 PF05036 Sporulation related domain XDD1_2656 PF02674 Colicin V production protein XDD1_2657 PF00156 Phosphoribosyl transferase domain XDD1_2658 PF02441 Flavoprotein XDD1_2659 PF01370 NAD dependent epimerase/dehydratase family XDD1_2659 PF08338 Domain of unknown function (DUF1731) XDD1_2660 PF02798 Glutathione S-transferase, N-terminal domain XDD1_2660 PF00043 Glutathione S-transferase, C-terminal domain XDD1_2661 PF00293 NUDIX domain XDD1_2668 PF00501 AMP-binding enzyme XDD1_2668 PF13193 AMP-binding enzyme C-terminal domain XDD1_2668 PF07993 Male sterility protein XDD1_2668 PF00668 Condensation domain XDD1_2668 PF00550 Phosphopantetheine attachment site XDD1_2669 PF00664 ABC transporter transmembrane region XDD1_2669 PF00005 ABC transporter XDD1_2670 PF00202 Aminotransferase class-III XDD1_2671 PF04958 Arginine N-succinyltransferase beta subunit XDD1_2672 PF00171 Aldehyde dehydrogenase family XDD1_2673 PF04996 Succinylarginine dihydrolase XDD1_2674 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family XDD1_2675 PF00324 Amino acid permease XDD1_2680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XDD1_2680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XDD1_2682 PF13193 AMP-binding enzyme C-terminal domain XDD1_2682 PF00501 AMP-binding enzyme XDD1_2685 PF01494 FAD binding domain XDD1_2686 PF07690 Major Facilitator Superfamily XDD1_2693 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XDD1_2694 PF01636 Phosphotransferase enzyme family XDD1_2695 PF01008 Initiation factor 2 subunit family XDD1_2696 PF00596 Class II Aldolase and Adducin N-terminal domain XDD1_2698 PF00749 tRNA synthetases class I (E and Q), catalytic domain XDD1_2700 PF07662 Na+ dependent nucleoside transporter C-terminus XDD1_2700 PF07670 Nucleoside recognition XDD1_2700 PF01773 Na+ dependent nucleoside transporter N-terminus XDD1_2701 PF12826 Helix-hairpin-helix motif XDD1_2701 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XDD1_2701 PF01653 NAD-dependent DNA ligase adenylation domain XDD1_2701 PF03120 NAD-dependent DNA ligase OB-fold domain XDD1_2701 PF00533 BRCA1 C Terminus (BRCT) domain XDD1_2702 PF04354 ZipA, C-terminal FtsZ-binding domain XDD1_2704 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_2705 PF00381 PTS HPr component phosphorylation site XDD1_2706 PF05524 PEP-utilising enzyme, N-terminal XDD1_2706 PF00391 PEP-utilising enzyme, mobile domain XDD1_2706 PF02896 PEP-utilising enzyme, TIM barrel domain XDD1_2707 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XDD1_2708 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XDD1_2708 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XDD1_2711 PF00668 Condensation domain XDD1_2711 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_2711 PF00550 Phosphopantetheine attachment site XDD1_2711 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_2711 PF00698 Acyl transferase domain XDD1_2711 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_2712 PF00501 AMP-binding enzyme XDD1_2712 PF00550 Phosphopantetheine attachment site XDD1_2712 PF13193 AMP-binding enzyme C-terminal domain XDD1_2712 PF00668 Condensation domain XDD1_2713 PF13193 AMP-binding enzyme C-terminal domain XDD1_2713 PF00550 Phosphopantetheine attachment site XDD1_2713 PF00975 Thioesterase domain XDD1_2713 PF00668 Condensation domain XDD1_2713 PF00501 AMP-binding enzyme XDD1_2714 PF00144 Beta-lactamase XDD1_2715 PF00550 Phosphopantetheine attachment site XDD1_2715 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_2715 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_2715 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_2715 PF00668 Condensation domain XDD1_2715 PF00698 Acyl transferase domain XDD1_2719 PF00501 AMP-binding enzyme XDD1_2719 PF00975 Thioesterase domain XDD1_2719 PF00668 Condensation domain XDD1_2719 PF00550 Phosphopantetheine attachment site XDD1_2719 PF13193 AMP-binding enzyme C-terminal domain XDD1_2720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XDD1_2720 PF02770 Acyl-CoA dehydrogenase, middle domain XDD1_2720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XDD1_2721 PF00550 Phosphopantetheine attachment site XDD1_2723 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_2726 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_2727 PF00005 ABC transporter XDD1_2727 PF08402 TOBE domain XDD1_2728 PF03009 Glycerophosphoryl diester phosphodiesterase family XDD1_2733 PF00005 ABC transporter XDD1_2734 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_2735 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_2736 PF06572 Protein of unknown function (DUF1131) XDD1_2739 PF00583 Acetyltransferase (GNAT) family XDD1_2756 PF03354 Phage Terminase XDD1_2758 PF13693 Winged helix-turn-helix DNA-binding XDD1_2759 PF01218 Coproporphyrinogen III oxidase XDD1_2760 PF01447 Thermolysin metallopeptidase, catalytic domain XDD1_2760 PF02868 Thermolysin metallopeptidase, alpha-helical domain XDD1_2760 PF16485 Protealysin propeptide XDD1_2766 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XDD1_2766 PF01926 50S ribosome-binding GTPase XDD1_2767 PF13360 PQQ-like domain XDD1_2768 PF09976 Tetratricopeptide repeat-like domain XDD1_2769 PF03129 Anticodon binding domain XDD1_2769 PF13393 Histidyl-tRNA synthetase XDD1_2770 PF04551 GcpE protein XDD1_2771 PF13464 Domain of unknown function (DUF4115) XDD1_2773 PF04055 Radical SAM superfamily XDD1_2774 PF00334 Nucleoside diphosphate kinase XDD1_2775 PF13443 Cro/C1-type HTH DNA-binding domain XDD1_2777 PF00912 Transglycosylase XDD1_2777 PF00905 Penicillin binding protein transpeptidase domain XDD1_2777 PF06832 Penicillin-Binding Protein C-terminus Family XDD1_2778 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XDD1_2778 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XDD1_2778 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XDD1_2778 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XDD1_2778 PF17962 Bacterial macroglobulin domain 6 XDD1_2778 PF01835 MG2 domain XDD1_2778 PF07703 Alpha-2-macroglobulin bait region domain XDD1_2778 PF07678 A-macroglobulin TED domain XDD1_2778 PF00207 Alpha-2-macroglobulin family XDD1_2780 PF00883 Cytosol aminopeptidase family, catalytic domain XDD1_2780 PF12404 Peptidase XDD1_2781 PF04384 Iron-sulphur cluster assembly XDD1_2782 PF00111 2Fe-2S iron-sulfur cluster binding domain XDD1_2783 PF00012 Hsp70 protein XDD1_2784 PF07743 HSCB C-terminal oligomerisation domain XDD1_2785 PF01521 Iron-sulphur cluster biosynthesis XDD1_2786 PF01592 NifU-like N terminal domain XDD1_2787 PF00266 Aminotransferase class-V XDD1_2788 PF02082 Transcriptional regulator XDD1_2789 PF00588 SpoU rRNA Methylase family XDD1_2790 PF00459 Inositol monophosphatase family XDD1_2791 PF12832 MFS_1 like family XDD1_2792 PF00464 Serine hydroxymethyltransferase XDD1_2793 PF00042 Globin XDD1_2793 PF00970 Oxidoreductase FAD-binding domain XDD1_2793 PF00175 Oxidoreductase NAD-binding domain XDD1_2794 PF00543 Nitrogen regulatory protein P-II XDD1_2795 PF00795 Carbon-nitrogen hydrolase XDD1_2795 PF02540 NAD synthase XDD1_2796 PF00158 Sigma-54 interaction domain XDD1_2796 PF00072 Response regulator receiver domain XDD1_2797 PF13942 YfhG lipoprotein XDD1_2798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_2798 PF00512 His Kinase A (phospho-acceptor) domain XDD1_2799 PF02769 AIR synthase related protein, C-terminal domain XDD1_2799 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XDD1_2799 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XDD1_2800 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_2800 PF01464 Transglycosylase SLT domain XDD1_2801 PF14437 MafB19-like deaminase XDD1_2802 PF01966 HD domain XDD1_2803 PF00730 HhH-GPD superfamily base excision DNA repair protein XDD1_2803 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain XDD1_2805 PF12838 4Fe-4S dicluster domain XDD1_2806 PF01648 4'-phosphopantetheinyl transferase superfamily XDD1_2807 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XDD1_2808 PF11967 Recombination protein O N terminal XDD1_2808 PF02565 Recombination protein O C terminal XDD1_2809 PF07650 KH domain XDD1_2809 PF01926 50S ribosome-binding GTPase XDD1_2810 PF00035 Double-stranded RNA binding motif XDD1_2810 PF14622 Ribonuclease-III-like XDD1_2811 PF10502 Signal peptidase, peptidase S26 XDD1_2812 PF06421 GTP-binding protein LepA C-terminus XDD1_2812 PF00679 Elongation factor G C-terminus XDD1_2812 PF00009 Elongation factor Tu GTP binding domain XDD1_2812 PF03144 Elongation factor Tu domain 2 XDD1_2814 PF17188 MucB/RseB C-terminal domain XDD1_2814 PF03888 MucB/RseB N-terminal domain XDD1_2815 PF03873 Anti sigma-E protein RseA, C-terminal domain XDD1_2815 PF03872 Anti sigma-E protein RseA, N-terminal domain XDD1_2816 PF08281 Sigma-70, region 4 XDD1_2816 PF04542 Sigma-70 region 2 XDD1_2817 PF05175 Methyltransferase small domain XDD1_2818 PF00271 Helicase conserved C-terminal domain XDD1_2818 PF00270 DEAD/DEAH box helicase XDD1_2820 PF01228 Glycine radical XDD1_2821 PF03167 Uracil DNA glycosylase superfamily XDD1_2822 PF01025 GrpE XDD1_2823 PF01513 ATP-NAD kinase XDD1_2824 PF02463 RecF/RecN/SMC N terminal domain XDD1_2825 PF04355 SmpA / OmlA family XDD1_2826 PF03658 RnfH family Ubiquitin XDD1_2827 PF03364 Polyketide cyclase / dehydrase and lipid transport XDD1_2828 PF01668 SmpB protein XDD1_2835 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XDD1_2862 PF05840 Bacteriophage replication gene A protein (GPA) XDD1_2866 PF17282 Family of unknown function (DUF5347) XDD1_2869 PF16452 Bacteriophage CI repressor C-terminal domain XDD1_2869 PF07022 Bacteriophage CI repressor helix-turn-helix domain XDD1_2870 PF00589 Phage integrase family XDD1_2870 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_2871 PF13358 DDE superfamily endonuclease XDD1_2877 PF00302 Chloramphenicol acetyltransferase XDD1_2878 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_2881 PF02954 Bacterial regulatory protein, Fis family XDD1_2881 PF06506 Propionate catabolism activator XDD1_2881 PF00158 Sigma-54 interaction domain XDD1_2883 PF00285 Citrate synthase, C-terminal domain XDD1_2884 PF03972 MmgE/PrpD family XDD1_2885 PF16177 Acetyl-coenzyme A synthetase N-terminus XDD1_2885 PF13193 AMP-binding enzyme C-terminal domain XDD1_2885 PF00501 AMP-binding enzyme XDD1_2888 PF00043 Glutathione S-transferase, C-terminal domain XDD1_2888 PF13417 Glutathione S-transferase, N-terminal domain XDD1_2889 PF01292 Prokaryotic cytochrome b561 XDD1_2890 PF04264 YceI-like domain XDD1_2894 PF00440 Bacterial regulatory proteins, tetR family XDD1_2895 PF07690 Major Facilitator Superfamily XDD1_2897 PF00230 Major intrinsic protein XDD1_2898 PF03974 Ecotin XDD1_2899 PF04325 Protein of unknown function (DUF465) XDD1_2900 PF04606 Ogr/Delta-like zinc finger XDD1_2907 PF04984 Phage tail sheath protein subtilisin-like domain XDD1_2907 PF17482 Phage tail sheath C-terminal domain XDD1_2910 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XDD1_2911 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XDD1_2912 PF03406 Phage tail fibre repeat XDD1_2920 PF05840 Bacteriophage replication gene A protein (GPA) XDD1_2921 PF17282 Family of unknown function (DUF5347) XDD1_2922 PF07022 Bacteriophage CI repressor helix-turn-helix domain XDD1_2922 PF16452 Bacteriophage CI repressor C-terminal domain XDD1_2929 PF12833 Helix-turn-helix domain XDD1_2931 PF02677 Epoxyqueuosine reductase QueH XDD1_2933 PF00501 AMP-binding enzyme XDD1_2933 PF13193 AMP-binding enzyme C-terminal domain XDD1_2937 PF01588 Putative tRNA binding domain XDD1_2938 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XDD1_2942 PF00294 pfkB family carbohydrate kinase XDD1_2948 PF02384 N-6 DNA Methylase XDD1_2949 PF01420 Type I restriction modification DNA specificity domain XDD1_2951 PF00152 tRNA synthetases class II (D, K and N) XDD1_2951 PF01336 OB-fold nucleic acid binding domain XDD1_2952 PF00472 RF-1 domain XDD1_2952 PF03462 PCRF domain XDD1_2953 PF17768 RecJ OB domain XDD1_2953 PF01368 DHH family XDD1_2953 PF02272 DHHA1 domain XDD1_2954 PF10411 Disulfide bond isomerase protein N-terminus XDD1_2954 PF13098 Thioredoxin-like domain XDD1_2955 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_2955 PF00589 Phage integrase family XDD1_2956 PF00258 Flavodoxin XDD1_2958 PF03937 Flavinator of succinate dehydrogenase XDD1_2959 PF01571 Aminomethyltransferase folate-binding domain XDD1_2961 PF03594 Benzoate membrane transport protein XDD1_2962 PF00392 Bacterial regulatory proteins, gntR family XDD1_2962 PF00155 Aminotransferase class I and II XDD1_2965 PF13358 DDE superfamily endonuclease XDD1_2967 PF07690 Major Facilitator Superfamily XDD1_2969 PF16861 Carbamoyltransferase C-terminus XDD1_2969 PF02543 Carbamoyltransferase N-terminus XDD1_2972 PF02347 Glycine cleavage system P-protein XDD1_2973 PF01597 Glycine cleavage H-protein XDD1_2974 PF01571 Aminomethyltransferase folate-binding domain XDD1_2974 PF08669 Glycine cleavage T-protein C-terminal barrel domain XDD1_2975 PF01494 FAD binding domain XDD1_2976 PF01494 FAD binding domain XDD1_2977 PF05195 Aminopeptidase P, N-terminal domain XDD1_2977 PF00557 Metallopeptidase family M24 XDD1_2978 PF03695 Uncharacterised protein family (UPF0149) XDD1_2980 PF05164 Cell division protein ZapA XDD1_2981 PF01812 5-formyltetrahydrofolate cyclo-ligase family XDD1_2982 PF01842 ACT domain XDD1_2982 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XDD1_2982 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_2984 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XDD1_2985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_2985 PF03466 LysR substrate binding domain XDD1_2986 PF04402 Protein of unknown function (DUF541) XDD1_2988 PF01810 LysE type translocator XDD1_2989 PF05552 Conserved TM helix XDD1_2989 PF00924 Mechanosensitive ion channel XDD1_2990 PF06062 Uncharacterised protein family (UPF0231) XDD1_2991 PF11791 Aconitate B N-terminal domain XDD1_2991 PF06434 Aconitate hydratase 2 N-terminus XDD1_2991 PF00330 Aconitase family (aconitate hydratase) XDD1_2994 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XDD1_2994 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_2995 PF00364 Biotin-requiring enzyme XDD1_2995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XDD1_2995 PF02817 e3 binding domain XDD1_2996 PF17831 Pyruvate dehydrogenase E1 component middle domain XDD1_2996 PF00456 Transketolase, thiamine diphosphate binding domain XDD1_2997 PF00392 Bacterial regulatory proteins, gntR family XDD1_2997 PF07729 FCD domain XDD1_3001 PF17113 Regulatory signalling modulator protein AmpE XDD1_3002 PF01510 N-acetylmuramoyl-L-alanine amidase XDD1_3003 PF07963 Prokaryotic N-terminal methylation motif XDD1_3004 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XDD1_3004 PF00437 Type II/IV secretion system protein XDD1_3005 PF00482 Type II secretion system (T2SS), protein F XDD1_3006 PF01121 Dephospho-CoA kinase XDD1_3007 PF07072 Cell division protein XDD1_3008 PF00293 NUDIX domain XDD1_3009 PF02810 SEC-C motif XDD1_3009 PF07517 SecA DEAD-like domain XDD1_3009 PF01043 SecA preprotein cross-linking domain XDD1_3009 PF07516 SecA Wing and Scaffold domain XDD1_3010 PF06558 Secretion monitor precursor protein (SecM) XDD1_3012 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XDD1_3013 PF12327 FtsZ family, C-terminal domain XDD1_3013 PF00091 Tubulin/FtsZ family, GTPase domain XDD1_3014 PF02491 SHS2 domain inserted in FTSA XDD1_3015 PF08478 POTRA domain, FtsQ-type XDD1_3015 PF03799 Cell division protein FtsQ XDD1_3016 PF01820 D-ala D-ala ligase N-terminus XDD1_3016 PF07478 D-ala D-ala ligase C-terminus XDD1_3017 PF08245 Mur ligase middle domain XDD1_3017 PF02875 Mur ligase family, glutamate ligase domain XDD1_3017 PF01225 Mur ligase family, catalytic domain XDD1_3018 PF03033 Glycosyltransferase family 28 N-terminal domain XDD1_3018 PF04101 Glycosyltransferase family 28 C-terminal domain XDD1_3019 PF01098 Cell cycle protein XDD1_3020 PF02875 Mur ligase family, glutamate ligase domain XDD1_3020 PF08245 Mur ligase middle domain XDD1_3021 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 XDD1_3021 PF00953 Glycosyl transferase family 4 XDD1_3022 PF02875 Mur ligase family, glutamate ligase domain XDD1_3022 PF01225 Mur ligase family, catalytic domain XDD1_3022 PF08245 Mur ligase middle domain XDD1_3023 PF02875 Mur ligase family, glutamate ligase domain XDD1_3023 PF01225 Mur ligase family, catalytic domain XDD1_3023 PF08245 Mur ligase middle domain XDD1_3024 PF03717 Penicillin-binding Protein dimerisation domain XDD1_3024 PF00905 Penicillin binding protein transpeptidase domain XDD1_3025 PF04999 Cell division protein FtsL XDD1_3026 PF01795 MraW methylase family XDD1_3027 PF02381 MraZ protein, putative antitoxin-like XDD1_3028 PF00356 Bacterial regulatory proteins, lacI family XDD1_3028 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XDD1_3029 PF10369 Small subunit of acetolactate synthase XDD1_3030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XDD1_3030 PF00205 Thiamine pyrophosphate enzyme, central domain XDD1_3030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XDD1_3031 PF00501 AMP-binding enzyme XDD1_3032 PF03466 LysR substrate binding domain XDD1_3032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3033 PF00682 HMGL-like XDD1_3033 PF08502 LeuA allosteric (dimerisation) domain XDD1_3034 PF00180 Isocitrate/isopropylmalate dehydrogenase XDD1_3036 PF02976 DNA mismatch repair enzyme MutH XDD1_3038 PF01327 Polypeptide deformylase XDD1_3039 PF01053 Cys/Met metabolism PLP-dependent enzyme XDD1_3040 PF00291 Pyridoxal-phosphate dependent enzyme XDD1_3040 PF00571 CBS domain XDD1_3051 PF00005 ABC transporter XDD1_3051 PF08402 TOBE domain XDD1_3052 PF01554 MatE XDD1_3053 PF05643 Putative bacterial lipoprotein (DUF799) XDD1_3055 PF03783 Curli production assembly/transport component CsgG XDD1_3058 PF00589 Phage integrase family XDD1_3059 PF07683 Cobalamin synthesis protein cobW C-terminal domain XDD1_3059 PF02492 CobW/HypB/UreG, nucleotide-binding domain XDD1_3060 PF04328 Selenoprotein, putative XDD1_3061 PF02554 Carbon starvation protein CstA XDD1_3061 PF13722 5TM C-terminal transporter carbon starvation CstA XDD1_3062 PF00884 Sulfatase XDD1_3067 PF07690 Major Facilitator Superfamily XDD1_3068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3068 PF07730 Histidine kinase XDD1_3068 PF05231 MASE1 XDD1_3069 PF00196 Bacterial regulatory proteins, luxR family XDD1_3069 PF00072 Response regulator receiver domain XDD1_3070 PF00857 Isochorismatase family XDD1_3071 PF02675 S-adenosylmethionine decarboxylase XDD1_3072 PF17284 Spermidine synthase tetramerisation domain XDD1_3076 PF13358 DDE superfamily endonuclease XDD1_3080 PF05638 Type VI secretion system effector, Hcp XDD1_3090 PF03354 Phage Terminase XDD1_3094 PF13693 Winged helix-turn-helix DNA-binding XDD1_3096 PF17284 Spermidine synthase tetramerisation domain XDD1_3097 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) XDD1_3098 PF00156 Phosphoribosyl transferase domain XDD1_3099 PF00484 Carbonic anhydrase XDD1_3100 PF00005 ABC transporter XDD1_3101 PF01061 ABC-2 type transporter XDD1_3102 PF02569 Pantoate-beta-alanine ligase XDD1_3103 PF02548 Ketopantoate hydroxymethyltransferase XDD1_3104 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XDD1_3105 PF12626 Polymerase A arginine-rich C-terminus XDD1_3105 PF12627 Probable RNA and SrmB- binding site of polymerase A XDD1_3105 PF01743 Poly A polymerase head domain XDD1_3106 PF00749 tRNA synthetases class I (E and Q), catalytic domain XDD1_3107 PF01258 Prokaryotic dksA/traR C4-type zinc finger XDD1_3108 PF17746 SfsA N-terminal OB domain XDD1_3108 PF03749 Sugar fermentation stimulation protein RE domain XDD1_3109 PF00270 DEAD/DEAH box helicase XDD1_3109 PF04408 Helicase associated domain (HA2) XDD1_3109 PF08482 ATP-dependent helicase C-terminal XDD1_3109 PF00271 Helicase conserved C-terminal domain XDD1_3110 PF14814 Bifunctional transglycosylase second domain XDD1_3110 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal XDD1_3110 PF00912 Transglycosylase XDD1_3110 PF00905 Penicillin binding protein transpeptidase domain XDD1_3118 PF01370 NAD dependent epimerase/dehydratase family XDD1_3119 PF00202 Aminotransferase class-III XDD1_3120 PF01521 Iron-sulphur cluster biosynthesis XDD1_3121 PF01497 Periplasmic binding protein XDD1_3122 PF01048 Phosphorylase superfamily XDD1_3123 PF01966 HD domain XDD1_3123 PF13286 Phosphohydrolase-associated domain XDD1_3124 PF01627 Hpt domain XDD1_3124 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) XDD1_3124 PF00512 His Kinase A (phospho-acceptor) domain XDD1_3124 PF00672 HAMP domain XDD1_3124 PF00072 Response regulator receiver domain XDD1_3124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3125 PF05958 tRNA (Uracil-5-)-methyltransferase XDD1_3125 PF01938 TRAM domain XDD1_3126 PF04607 Region found in RelA / SpoT proteins XDD1_3126 PF13291 ACT domain XDD1_3126 PF02824 TGS domain XDD1_3127 PF03819 MazG nucleotide pyrophosphohydrolase domain XDD1_3128 PF06418 CTP synthase N-terminus XDD1_3128 PF00117 Glutamine amidotransferase class-I XDD1_3129 PF03952 Enolase, N-terminal domain XDD1_3129 PF00113 Enolase, C-terminal TIM barrel domain XDD1_3132 PF00939 Sodium:sulfate symporter transmembrane region XDD1_3133 PF00171 Aldehyde dehydrogenase family XDD1_3134 PF00375 Sodium:dicarboxylate symporter family XDD1_3137 PF10263 SprT-like family XDD1_3137 PF17283 SprT-like zinc ribbon domain XDD1_3138 PF02773 S-adenosylmethionine synthetase, C-terminal domain XDD1_3138 PF02772 S-adenosylmethionine synthetase, central domain XDD1_3138 PF00438 S-adenosylmethionine synthetase, N-terminal domain XDD1_3139 PF17810 Arginine decarboxylase helical bundle domain XDD1_3139 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XDD1_3139 PF17944 Arginine decarboxylase C-terminal helical extension XDD1_3140 PF00491 Arginase family XDD1_3143 PF17837 4'-phosphopantetheinyl transferase N-terminal domain XDD1_3143 PF01648 4'-phosphopantetheinyl transferase superfamily XDD1_3145 PF16363 GDP-mannose 4,6 dehydratase XDD1_3146 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain XDD1_3146 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain XDD1_3147 PF00288 GHMP kinases N terminal domain XDD1_3147 PF08544 GHMP kinases C terminal XDD1_3147 PF10509 Galactokinase galactose-binding signature XDD1_3150 PF13358 DDE superfamily endonuclease XDD1_3152 PF00557 Metallopeptidase family M24 XDD1_3153 PF02661 Fic/DOC family XDD1_3153 PF13784 Fic/DOC family N-terminal XDD1_3154 PF17841 BID domain of Bartonella effector protein (Bep) XDD1_3154 PF02661 Fic/DOC family XDD1_3156 PF01624 MutS domain I XDD1_3156 PF00488 MutS domain V XDD1_3156 PF05188 MutS domain II XDD1_3156 PF05192 MutS domain III XDD1_3156 PF05190 MutS family domain IV XDD1_3157 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) XDD1_3158 PF04539 Sigma-70 region 3 XDD1_3158 PF04545 Sigma-70, region 4 XDD1_3158 PF04542 Sigma-70 region 2 XDD1_3158 PF00140 Sigma-70 factor, region 1.2 XDD1_3159 PF01476 LysM domain XDD1_3159 PF01551 Peptidase family M23 XDD1_3161 PF01975 Survival protein SurE XDD1_3162 PF01142 tRNA pseudouridine synthase D (TruD) XDD1_3163 PF02542 YgbB family XDD1_3164 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XDD1_3165 PF04977 Septum formation initiator XDD1_3168 PF00009 Elongation factor Tu GTP binding domain XDD1_3169 PF01507 Phosphoadenosine phosphosulfate reductase family XDD1_3170 PF10414 Sirohaem synthase dimerisation region XDD1_3170 PF14824 Sirohaem biosynthesis protein central XDD1_3170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XDD1_3171 PF01507 Phosphoadenosine phosphosulfate reductase family XDD1_3172 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XDD1_3172 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XDD1_3173 PF00258 Flavodoxin XDD1_3173 PF00175 Oxidoreductase NAD-binding domain XDD1_3173 PF00667 FAD binding domain XDD1_3175 PF01242 6-pyruvoyl tetrahydropterin synthase XDD1_3176 PF04055 Radical SAM superfamily XDD1_3177 PF00324 Amino acid permease XDD1_3178 PF03372 Endonuclease/Exonuclease/phosphatase family XDD1_3184 PF12724 Flavodoxin domain XDD1_3185 PF02386 Cation transport protein XDD1_3186 PF01205 Uncharacterized protein family UPF0029 XDD1_3186 PF09186 Domain of unknown function (DUF1949) XDD1_3187 PF00557 Metallopeptidase family M24 XDD1_3188 PF00378 Enoyl-CoA hydratase/isomerase XDD1_3188 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XDD1_3188 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XDD1_3189 PF00108 Thiolase, N-terminal domain XDD1_3189 PF02803 Thiolase, C-terminal domain XDD1_3190 PF00175 Oxidoreductase NAD-binding domain XDD1_3190 PF00970 Oxidoreductase FAD-binding domain XDD1_3191 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase XDD1_3192 PF02357 Transcription termination factor nusG XDD1_3193 PF00490 Delta-aminolevulinic acid dehydratase XDD1_3194 PF00902 Sec-independent protein translocase protein (TatC) XDD1_3196 PF02416 mttA/Hcf106 family XDD1_3197 PF03109 ABC1 family XDD1_3198 PF02036 SCP-2 sterol transfer family XDD1_3199 PF01209 ubiE/COQ5 methyltransferase family XDD1_3200 PF02646 RmuC family XDD1_3201 PF09335 SNARE associated Golgi protein XDD1_3203 PF01048 Phosphorylase superfamily XDD1_3204 PF02447 GntP family permease XDD1_3205 PF02447 GntP family permease XDD1_3206 PF01370 NAD dependent epimerase/dehydratase family XDD1_3207 PF00455 DeoR C terminal sensor domain XDD1_3207 PF08220 DeoR-like helix-turn-helix domain XDD1_3208 PF01261 Xylose isomerase-like TIM barrel XDD1_3209 PF07005 Sugar-binding N-terminal domain XDD1_3209 PF17042 Nucleotide-binding C-terminal domain XDD1_3210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase XDD1_3210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XDD1_3214 PF08267 Cobalamin-independent synthase, N-terminal domain XDD1_3214 PF01717 Cobalamin-independent synthase, Catalytic domain XDD1_3215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3215 PF03466 LysR substrate binding domain XDD1_3216 PF00892 EamA-like transporter family XDD1_3217 PF00999 Sodium/hydrogen exchanger family XDD1_3218 PF00860 Permease family XDD1_3222 PF07350 Protein of unknown function (DUF1479) XDD1_3223 PF02685 Glucokinase XDD1_3226 PF00436 Single-strand binding protein family XDD1_3227 PF00005 ABC transporter XDD1_3227 PF17755 UvrA DNA-binding domain XDD1_3227 PF17760 UvrA interaction domain XDD1_3230 PF00155 Aminotransferase class I and II XDD1_3231 PF01168 Alanine racemase, N-terminal domain XDD1_3231 PF00842 Alanine racemase, C-terminal domain XDD1_3232 PF03796 DnaB-like helicase C terminal domain XDD1_3232 PF00772 DnaB-like helicase N terminal domain XDD1_3233 PF13693 Winged helix-turn-helix DNA-binding XDD1_3245 PF05638 Type VI secretion system effector, Hcp XDD1_3253 PF00107 Zinc-binding dehydrogenase XDD1_3253 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_3254 PF01207 Dihydrouridine synthase (Dus) XDD1_3256 PF01475 Ferric uptake regulator family XDD1_3257 PF00717 Peptidase S24-like XDD1_3257 PF01726 LexA DNA binding domain XDD1_3258 PF01219 Prokaryotic diacylglycerol kinase XDD1_3259 PF01553 Acyltransferase XDD1_3260 PF01040 UbiA prenyltransferase family XDD1_3261 PF04345 Chorismate lyase XDD1_3262 PF00342 Phosphoglucose isomerase XDD1_3263 PF00696 Amino acid kinase family XDD1_3263 PF01842 ACT domain XDD1_3265 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system XDD1_3267 PF09339 IclR helix-turn-helix domain XDD1_3267 PF01614 Bacterial transcriptional regulator XDD1_3268 PF01081 KDPG and KHG aldolase XDD1_3269 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XDD1_3270 PF00463 Isocitrate lyase family XDD1_3271 PF01274 Malate synthase XDD1_3272 PF04204 Homoserine O-succinyltransferase XDD1_3278 PF09383 NIL domain XDD1_3278 PF00005 ABC transporter XDD1_3279 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3280 PF03180 NLPA lipoprotein XDD1_3283 PF01980 tRNA-methyltransferase O XDD1_3283 PF18389 TrmO C-terminal domain XDD1_3284 PF04073 Aminoacyl-tRNA editing domain XDD1_3284 PF03129 Anticodon binding domain XDD1_3284 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XDD1_3285 PF04170 NlpE N-terminal domain XDD1_3285 PF17185 NlpE C-terminal OB domain XDD1_3286 PF07073 Modulator of Rho-dependent transcription termination (ROF) XDD1_3288 PF01171 PP-loop family XDD1_3288 PF11734 TilS substrate C-terminal domain XDD1_3288 PF09179 TilS substrate binding domain XDD1_3290 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XDD1_3291 PF02811 PHP domain XDD1_3291 PF14579 Helix-hairpin-helix motif XDD1_3291 PF01336 OB-fold nucleic acid binding domain XDD1_3291 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XDD1_3291 PF07733 Bacterial DNA polymerase III alpha NTPase domain XDD1_3292 PF01351 Ribonuclease HII XDD1_3293 PF02684 Lipid-A-disaccharide synthetase XDD1_3294 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XDD1_3294 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_3295 PF07977 FabA-like domain XDD1_3296 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_3296 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XDD1_3297 PF03938 Outer membrane protein (OmpH-like) XDD1_3298 PF01103 Surface antigen XDD1_3298 PF07244 Surface antigen variable number repeat XDD1_3299 PF02163 Peptidase family M50 XDD1_3299 PF17820 PDZ domain XDD1_3301 PF01255 Putative undecaprenyl diphosphate synthase XDD1_3302 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XDD1_3302 PF13288 DXP reductoisomerase C-terminal domain XDD1_3302 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XDD1_3303 PF01765 Ribosome recycling factor XDD1_3304 PF00696 Amino acid kinase family XDD1_3305 PF00889 Elongation factor TS XDD1_3306 PF00318 Ribosomal protein S2 XDD1_3307 PF00557 Metallopeptidase family M24 XDD1_3308 PF08335 GlnD PII-uridylyltransferase XDD1_3308 PF01842 ACT domain XDD1_3308 PF01966 HD domain XDD1_3309 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XDD1_3309 PF00132 Bacterial transferase hexapeptide (six repeats) XDD1_3309 PF14602 Hexapeptide repeat of succinyl-transferase XDD1_3311 PF11944 Protein of unknown function (DUF3461) XDD1_3312 PF00258 Flavodoxin XDD1_3314 PF00849 RNA pseudouridylate synthase XDD1_3315 PF04287 tRNA pseudouridine synthase C XDD1_3316 PF07348 Syd protein (SUKH-2) XDD1_3320 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XDD1_3320 PF14489 QueF-like protein XDD1_3323 PF01367 5'-3' exonuclease, C-terminal SAM fold XDD1_3323 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XDD1_3324 PF02321 Outer membrane efflux protein XDD1_3325 PF00529 HlyD membrane-fusion protein of T1SS XDD1_3326 PF00664 ABC transporter transmembrane region XDD1_3326 PF00005 ABC transporter XDD1_3327 PF02974 Protease inhibitor Inh XDD1_3329 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) XDD1_3329 PF08548 Peptidase M10 serralysin C terminal XDD1_3331 PF13358 DDE superfamily endonuclease XDD1_3331 PF13592 Winged helix-turn helix XDD1_3333 PF13649 Methyltransferase domain XDD1_3333 PF17827 PrmC N-terminal domain XDD1_3334 PF00155 Aminotransferase class I and II XDD1_3337 PF13592 Winged helix-turn helix XDD1_3337 PF13358 DDE superfamily endonuclease XDD1_3339 PF00425 chorismate binding enzyme XDD1_3339 PF00117 Glutamine amidotransferase class-I XDD1_3339 PF04715 Anthranilate synthase component I, N terminal region XDD1_3341 PF07690 Major Facilitator Superfamily XDD1_3346 PF01728 FtsJ-like methyltransferase XDD1_3346 PF18125 RlmM ferredoxin-like domain XDD1_3347 PF04241 Protein of unknown function (DUF423) XDD1_3348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3348 PF03466 LysR substrate binding domain XDD1_3350 PF00266 Aminotransferase class-V XDD1_3354 PF05638 Type VI secretion system effector, Hcp XDD1_3355 PF02657 Fe-S metabolism associated domain XDD1_3356 PF00899 ThiF family XDD1_3357 PF06725 3D domain XDD1_3357 PF03562 MltA specific insert domain XDD1_3358 PF11741 AMIN domain XDD1_3358 PF01520 N-acetylmuramoyl-L-alanine amidase XDD1_3359 PF00696 Amino acid kinase family XDD1_3359 PF00583 Acetyltransferase (GNAT) family XDD1_3360 PF13538 UvrD-like helicase C-terminal domain XDD1_3361 PF00580 UvrD/REP helicase N-terminal domain XDD1_3361 PF13361 UvrD-like helicase C-terminal domain XDD1_3361 PF12705 PD-(D/E)XK nuclease superfamily XDD1_3362 PF16187 Middle or third domain of peptidase_M16 XDD1_3362 PF05193 Peptidase M16 inactive domain XDD1_3362 PF00675 Insulinase (Peptidase family M16) XDD1_3363 PF17946 RecC C-terminal domain XDD1_3366 PF07963 Prokaryotic N-terminal methylation motif XDD1_3367 PF07963 Prokaryotic N-terminal methylation motif XDD1_3371 PF00303 Thymidylate synthase XDD1_3372 PF01790 Prolipoprotein diacylglyceryl transferase XDD1_3373 PF01590 GAF domain XDD1_3373 PF00391 PEP-utilising enzyme, mobile domain XDD1_3373 PF05524 PEP-utilising enzyme, N-terminal XDD1_3373 PF02896 PEP-utilising enzyme, TIM barrel domain XDD1_3374 PF00293 NUDIX domain XDD1_3376 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3377 PF00005 ABC transporter XDD1_3381 PF00136 DNA polymerase family B XDD1_3381 PF03104 DNA polymerase family B, exonuclease domain XDD1_3382 PF12137 RNA polymerase recycling family C-terminal XDD1_3382 PF00176 SNF2 family N-terminal domain XDD1_3382 PF18337 RapA N-terminal Tudor like domain XDD1_3382 PF18339 RapA N-terminal Tudor like domain 1 XDD1_3382 PF00271 Helicase conserved C-terminal domain XDD1_3383 PF00849 RNA pseudouridylate synthase XDD1_3384 PF00226 DnaJ domain XDD1_3384 PF05099 Tellurite resistance protein TerB XDD1_3386 PF03968 OstA-like protein XDD1_3386 PF04453 LPS transport system D XDD1_3387 PF09312 SurA N-terminal domain XDD1_3388 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XDD1_3389 PF00398 Ribosomal RNA adenine dimethylase XDD1_3390 PF04379 ApaG domain XDD1_3391 PF00149 Calcineurin-like phosphoesterase XDD1_3392 PF00186 Dihydrofolate reductase XDD1_3393 PF07731 Multicopper oxidase XDD1_3393 PF07732 Multicopper oxidase XDD1_3394 PF01553 Acyltransferase XDD1_3396 PF00521 DNA gyrase/topoisomerase IV, subunit A XDD1_3396 PF03989 DNA gyrase C-terminal domain, beta-propeller XDD1_3397 PF00204 DNA gyrase B XDD1_3397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3397 PF01751 Toprim domain XDD1_3397 PF00986 DNA gyrase B subunit, carboxyl terminus XDD1_3398 PF05728 Uncharacterised protein family (UPF0227) XDD1_3399 PF00149 Calcineurin-like phosphoesterase XDD1_3400 PF00293 NUDIX domain XDD1_3401 PF02321 Outer membrane efflux protein XDD1_3402 PF06693 Protein of unknown function (DUF1190) XDD1_3403 PF03738 Glutathionylspermidine synthase preATP-grasp XDD1_3404 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XDD1_3405 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XDD1_3406 PF04380 Membrane fusogenic activity XDD1_3407 PF00294 pfkB family carbohydrate kinase XDD1_3407 PF01467 Cytidylyltransferase-like XDD1_3408 PF08335 GlnD PII-uridylyltransferase XDD1_3408 PF03710 Glutamate-ammonia ligase adenylyltransferase XDD1_3409 PF01928 CYTH domain XDD1_3410 PF08239 Bacterial SH3 domain XDD1_3411 PF12627 Probable RNA and SrmB- binding site of polymerase A XDD1_3411 PF01743 Poly A polymerase head domain XDD1_3411 PF01966 HD domain XDD1_3412 PF02152 Dihydroneopterin aldolase XDD1_3413 PF02660 Glycerol-3-phosphate acyltransferase XDD1_3414 PF00814 Glycoprotease family XDD1_3415 PF01165 Ribosomal protein S21 XDD1_3416 PF08275 DNA primase catalytic core, N-terminal domain XDD1_3416 PF10410 DnaB-helicase binding domain of primase XDD1_3416 PF08278 DNA primase DnaG DnaB-binding XDD1_3416 PF01807 CHC2 zinc finger XDD1_3417 PF04539 Sigma-70 region 3 XDD1_3417 PF04542 Sigma-70 region 2 XDD1_3417 PF00140 Sigma-70 factor, region 1.2 XDD1_3417 PF04545 Sigma-70, region 4 XDD1_3417 PF03979 Sigma-70 factor, region 1.1 XDD1_3417 PF04546 Sigma-70, non-essential region XDD1_3420 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system XDD1_3424 PF02413 Caudovirales tail fibre assembly protein, lambda gpK XDD1_3449 PF05840 Bacteriophage replication gene A protein (GPA) XDD1_3453 PF17282 Family of unknown function (DUF5347) XDD1_3454 PF06892 Phage regulatory protein CII (CP76) XDD1_3457 PF00589 Phage integrase family XDD1_3457 PF02899 Phage integrase, N-terminal SAM-like domain XDD1_3463 PF00550 Phosphopantetheine attachment site XDD1_3465 PF13193 AMP-binding enzyme C-terminal domain XDD1_3465 PF00501 AMP-binding enzyme XDD1_3466 PF07977 FabA-like domain XDD1_3472 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_3472 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_3475 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_3475 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_3476 PF07690 Major Facilitator Superfamily XDD1_3477 PF13673 Acetyltransferase (GNAT) domain XDD1_3479 PF04393 Protein of unknown function (DUF535) XDD1_3481 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XDD1_3481 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_3482 PF00375 Sodium:dicarboxylate symporter family XDD1_3483 PF09335 SNARE associated Golgi protein XDD1_3484 PF05957 Bacterial protein of unknown function (DUF883) XDD1_3485 PF07332 Putative Actinobacterial Holin-X, holin superfamily III XDD1_3487 PF07681 DoxX XDD1_3488 PF03466 LysR substrate binding domain XDD1_3488 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3489 PF17954 Quercetinase C-terminal cupin domain XDD1_3489 PF02678 Pirin XDD1_3490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XDD1_3491 PF04348 LppC putative lipoprotein XDD1_3492 PF02021 Uncharacterised protein family UPF0102 XDD1_3493 PF13580 SIS domain XDD1_3494 PF04972 BON domain XDD1_3498 PF13358 DDE superfamily endonuclease XDD1_3498 PF13592 Winged helix-turn helix XDD1_3501 PF00912 Transglycosylase XDD1_3503 PF18415 Histidine kinase receptor ArcB trans-membrane domain XDD1_3503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3503 PF01627 Hpt domain XDD1_3503 PF00512 His Kinase A (phospho-acceptor) domain XDD1_3503 PF00989 PAS fold XDD1_3503 PF00072 Response regulator receiver domain XDD1_3504 PF04898 Glutamate synthase central domain XDD1_3504 PF00310 Glutamine amidotransferases class-II XDD1_3504 PF01645 Conserved region in glutamate synthase XDD1_3504 PF01493 GXGXG motif XDD1_3505 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_3505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XDD1_3507 PF04386 Stringent starvation protein B XDD1_3508 PF02798 Glutathione S-transferase, N-terminal domain XDD1_3508 PF00043 Glutathione S-transferase, C-terminal domain XDD1_3509 PF00380 Ribosomal protein S9/S16 XDD1_3510 PF00572 Ribosomal protein L13 XDD1_3511 PF03969 AFG1-like ATPase XDD1_3512 PF06295 Protein of unknown function (DUF1043) XDD1_3513 PF13180 PDZ domain XDD1_3513 PF00595 PDZ domain XDD1_3514 PF13180 PDZ domain XDD1_3515 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XDD1_3516 PF01722 BolA-like protein XDD1_3518 PF05494 MlaC protein XDD1_3519 PF02470 MlaD protein XDD1_3520 PF02405 Permease MlaE XDD1_3521 PF00005 ABC transporter XDD1_3522 PF01699 Sodium/calcium exchanger protein XDD1_3523 PF01380 SIS domain XDD1_3523 PF00571 CBS domain XDD1_3525 PF06835 Lipopolysaccharide-assembly, LptC-related XDD1_3526 PF03968 OstA-like protein XDD1_3527 PF00005 ABC transporter XDD1_3527 PF12399 Branched-chain amino acid ATP-binding cassette transporter XDD1_3528 PF04963 Sigma-54 factor, core binding domain XDD1_3528 PF04552 Sigma-54, DNA binding domain XDD1_3528 PF00309 Sigma-54 factor, Activator interacting domain (AID) XDD1_3529 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XDD1_3530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XDD1_3531 PF03668 P-loop ATPase protein family XDD1_3532 PF00381 PTS HPr component phosphorylation site XDD1_3534 PF01168 Alanine racemase, N-terminal domain XDD1_3534 PF00842 Alanine racemase, C-terminal domain XDD1_3535 PF14760 Rnk N-terminus XDD1_3535 PF01272 Transcription elongation factor, GreA/GreB, C-term XDD1_3538 PF01523 Putative modulator of DNA gyrase XDD1_3539 PF04751 Protein of unknown function (DUF615) XDD1_3540 PF01842 ACT domain XDD1_3540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XDD1_3540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XDD1_3541 PF07338 Protein of unknown function (DUF1471) XDD1_3542 PF09278 MerR, DNA binding XDD1_3542 PF00376 MerR family regulatory protein XDD1_3545 PF00873 AcrB/AcrD/AcrF family XDD1_3546 PF01523 Putative modulator of DNA gyrase XDD1_3547 PF00795 Carbon-nitrogen hydrolase XDD1_3548 PF13116 Protein of unknown function XDD1_3548 PF13502 AsmA-like C-terminal region XDD1_3549 PF00575 S1 RNA binding domain XDD1_3549 PF10150 Ribonuclease E/G family XDD1_3550 PF02545 Maf-like protein XDD1_3551 PF04093 rod shape-determining protein MreD XDD1_3552 PF04085 rod shape-determining protein MreC XDD1_3555 PF00107 Zinc-binding dehydrogenase XDD1_3555 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_3556 PF01220 Dehydroquinase class II XDD1_3557 PF00364 Biotin-requiring enzyme XDD1_3558 PF02785 Biotin carboxylase C-terminal domain XDD1_3558 PF00289 Biotin carboxylase, N-terminal domain XDD1_3558 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XDD1_3559 PF06196 Protein of unknown function (DUF997) XDD1_3560 PF00474 Sodium:solute symporter family XDD1_3562 PF01207 Dihydrouridine synthase (Dus) XDD1_3563 PF02954 Bacterial regulatory protein, Fis family XDD1_3567 PF05638 Type VI secretion system effector, Hcp XDD1_3569 PF13592 Winged helix-turn helix XDD1_3569 PF13358 DDE superfamily endonuclease XDD1_3570 PF13358 DDE superfamily endonuclease XDD1_3570 PF13592 Winged helix-turn helix XDD1_3571 PF13193 AMP-binding enzyme C-terminal domain XDD1_3571 PF00668 Condensation domain XDD1_3571 PF00550 Phosphopantetheine attachment site XDD1_3571 PF00501 AMP-binding enzyme XDD1_3573 PF01381 Helix-turn-helix XDD1_3574 PF02595 Glycerate kinase family XDD1_3575 PF04545 Sigma-70, region 4 XDD1_3575 PF00140 Sigma-70 factor, region 1.2 XDD1_3575 PF04542 Sigma-70 region 2 XDD1_3576 PF02687 FtsX-like permease family XDD1_3576 PF18075 FtsX extracellular domain XDD1_3577 PF00005 ABC transporter XDD1_3578 PF00448 SRP54-type protein, GTPase domain XDD1_3578 PF02881 SRP54-type protein, helical bundle domain XDD1_3578 PF00448 SRP54-type protein, GTPase domain XDD1_3578 PF02881 SRP54-type protein, helical bundle domain XDD1_3580 PF06611 Protein of unknown function (DUF1145) XDD1_3582 PF00403 Heavy-metal-associated domain XDD1_3583 PF01206 Sulfurtransferase TusA XDD1_3584 PF02592 Putative vitamin uptake transporter XDD1_3585 PF00465 Iron-containing alcohol dehydrogenase XDD1_3586 PF14765 Polyketide synthase dehydratase XDD1_3586 PF00550 Phosphopantetheine attachment site XDD1_3586 PF00501 AMP-binding enzyme XDD1_3586 PF13193 AMP-binding enzyme C-terminal domain XDD1_3586 PF08659 KR domain XDD1_3586 PF00109 Beta-ketoacyl synthase, N-terminal domain XDD1_3586 PF02801 Beta-ketoacyl synthase, C-terminal domain XDD1_3586 PF00668 Condensation domain XDD1_3586 PF16197 Ketoacyl-synthetase C-terminal extension XDD1_3587 PF07690 Major Facilitator Superfamily XDD1_3588 PF03009 Glycerophosphoryl diester phosphodiesterase family XDD1_3589 PF00152 tRNA synthetases class II (D, K and N) XDD1_3590 PF02910 Fumarate reductase flavoprotein C-term XDD1_3590 PF00890 FAD binding domain XDD1_3591 PF13183 4Fe-4S dicluster domain XDD1_3591 PF13085 2Fe-2S iron-sulfur cluster binding domain XDD1_3592 PF02300 Fumarate reductase subunit C XDD1_3593 PF02313 Fumarate reductase subunit D XDD1_3594 PF07715 TonB-dependent Receptor Plug Domain XDD1_3594 PF00593 TonB dependent receptor XDD1_3596 PF00289 Biotin carboxylase, N-terminal domain XDD1_3596 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XDD1_3596 PF02785 Biotin carboxylase C-terminal domain XDD1_3596 PF00364 Biotin-requiring enzyme XDD1_3598 PF03746 LamB/YcsF family XDD1_3599 PF01566 Natural resistance-associated macrophage protein XDD1_3607 PF02142 MGS-like domain XDD1_3607 PF01808 AICARFT/IMPCHase bienzyme XDD1_3608 PF02843 Phosphoribosylglycinamide synthetase, C domain XDD1_3608 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XDD1_3608 PF02844 Phosphoribosylglycinamide synthetase, N domain XDD1_3609 PF07356 Protein of unknown function (DUF1481) XDD1_3610 PF00216 Bacterial DNA-binding protein XDD1_3611 PF04222 Protein of unknown function (DUF416) XDD1_3612 PF04493 Endonuclease V XDD1_3613 PF01208 Uroporphyrinogen decarboxylase (URO-D) XDD1_3614 PF09297 NADH pyrophosphatase zinc ribbon domain XDD1_3614 PF00293 NUDIX domain XDD1_3615 PF01964 Radical SAM ThiC family XDD1_3615 PF13667 ThiC-associated domain XDD1_3616 PF02581 Thiamine monophosphate synthase XDD1_3617 PF00899 ThiF family XDD1_3619 PF05690 Thiazole biosynthesis protein ThiG XDD1_3620 PF04055 Radical SAM superfamily XDD1_3620 PF06968 Biotin and Thiamin Synthesis associated domain XDD1_3621 PF00293 NUDIX domain XDD1_3622 PF13419 Haloacid dehalogenase-like hydrolase XDD1_3623 PF13358 DDE superfamily endonuclease XDD1_3623 PF13592 Winged helix-turn helix XDD1_3625 PF07690 Major Facilitator Superfamily XDD1_3626 PF13419 Haloacid dehalogenase-like hydrolase XDD1_3627 PF08240 Alcohol dehydrogenase GroES-like domain XDD1_3627 PF00107 Zinc-binding dehydrogenase XDD1_3628 PF00202 Aminotransferase class-III XDD1_3629 PF00196 Bacterial regulatory proteins, luxR family XDD1_3629 PF17874 MalT-like TPR region XDD1_3631 PF00343 Carbohydrate phosphorylase XDD1_3632 PF02446 4-alpha-glucanotransferase XDD1_3633 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3634 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3634 PF14785 Maltose transport system permease protein MalF P2 domain XDD1_3635 PF01547 Bacterial extracellular solute-binding protein XDD1_3636 PF00005 ABC transporter XDD1_3636 PF17912 MalK OB fold domain XDD1_3637 PF02264 LamB porin XDD1_3638 PF07148 Maltose operon periplasmic protein precursor (MalM) XDD1_3639 PF01522 Polysaccharide deacetylase XDD1_3640 PF04997 RNA polymerase Rpb1, domain 1 XDD1_3640 PF04998 RNA polymerase Rpb1, domain 5 XDD1_3640 PF05000 RNA polymerase Rpb1, domain 4 XDD1_3640 PF04983 RNA polymerase Rpb1, domain 3 XDD1_3640 PF00623 RNA polymerase Rpb1, domain 2 XDD1_3641 PF04560 RNA polymerase Rpb2, domain 7 XDD1_3641 PF00562 RNA polymerase Rpb2, domain 6 XDD1_3641 PF10385 RNA polymerase beta subunit external 1 domain XDD1_3641 PF04565 RNA polymerase Rpb2, domain 3 XDD1_3641 PF04561 RNA polymerase Rpb2, domain 2 XDD1_3641 PF04563 RNA polymerase beta subunit XDD1_3642 PF16320 Ribosomal protein L7/L12 dimerisation domain XDD1_3642 PF00542 Ribosomal protein L7/L12 C-terminal domain XDD1_3643 PF00466 Ribosomal protein L10 XDD1_3644 PF00687 Ribosomal protein L1p/L10e family XDD1_3645 PF00298 Ribosomal protein L11, RNA binding domain XDD1_3645 PF03946 Ribosomal protein L11, N-terminal domain XDD1_3646 PF00467 KOW motif XDD1_3646 PF02357 Transcription termination factor nusG XDD1_3647 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XDD1_3648 PF03143 Elongation factor Tu C-terminal domain XDD1_3648 PF03144 Elongation factor Tu domain 2 XDD1_3648 PF00009 Elongation factor Tu GTP binding domain XDD1_3649 PF00009 Elongation factor Tu GTP binding domain XDD1_3649 PF03764 Elongation factor G, domain IV XDD1_3649 PF14492 Elongation Factor G, domain II XDD1_3649 PF00679 Elongation factor G C-terminus XDD1_3649 PF03144 Elongation factor Tu domain 2 XDD1_3650 PF00177 Ribosomal protein S7p/S5e XDD1_3651 PF00164 Ribosomal protein S12/S23 XDD1_3652 PF04077 DsrH like protein XDD1_3653 PF02635 DsrE/DsrF-like family XDD1_3654 PF02635 DsrE/DsrF-like family XDD1_3655 PF08348 YheO-like PAS domain XDD1_3655 PF13309 HTH domain XDD1_3656 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XDD1_3656 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XDD1_3657 PF04102 SlyX XDD1_3658 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XDD1_3659 PF09526 Probable metal-binding protein (DUF2387) XDD1_3660 PF00005 ABC transporter XDD1_3660 PF12848 ABC transporter XDD1_3661 PF03466 LysR substrate binding domain XDD1_3661 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3662 PF13580 SIS domain XDD1_3663 PF02378 Phosphotransferase system, EIIC XDD1_3663 PF00367 phosphotransferase system, EIIB XDD1_3664 PF01810 LysE type translocator XDD1_3665 PF06794 Uncharacterised protein family (UPF0270) XDD1_3666 PF00485 Phosphoribulokinase / Uridine kinase family XDD1_3667 PF00027 Cyclic nucleotide-binding domain XDD1_3667 PF13545 Crp-like helix-turn-helix domain XDD1_3668 PF00202 Aminotransferase class-III XDD1_3669 PF00117 Glutamine amidotransferase class-I XDD1_3670 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XDD1_3671 PF01926 50S ribosome-binding GTPase XDD1_3672 PF00476 DNA polymerase family A XDD1_3672 PF01612 3'-5' exonuclease XDD1_3672 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XDD1_3672 PF01367 5'-3' exonuclease, C-terminal SAM fold XDD1_3673 PF01323 DSBA-like thioredoxin domain XDD1_3674 PF01636 Phosphotransferase enzyme family XDD1_3675 PF06288 Protein of unknown function (DUF1040) XDD1_3681 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XDD1_3682 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XDD1_3682 PF07992 Pyridine nucleotide-disulphide oxidoreductase XDD1_3684 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XDD1_3684 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XDD1_3685 PF00325 Bacterial regulatory proteins, crp family XDD1_3685 PF04198 Putative sugar-binding domain XDD1_3686 PF00005 ABC transporter XDD1_3687 PF02653 Branched-chain amino acid transport system / permease component XDD1_3688 PF02653 Branched-chain amino acid transport system / permease component XDD1_3689 PF13407 Periplasmic binding protein domain XDD1_3690 PF01791 DeoC/LacD family aldolase XDD1_3691 PF03992 Antibiotic biosynthesis monooxygenase XDD1_3692 PF00282 Pyridoxal-dependent decarboxylase conserved domain XDD1_3693 PF03205 Molybdopterin guanine dinucleotide synthesis protein B XDD1_3694 PF12804 MobA-like NTP transferase domain XDD1_3701 PF03527 RHS protein XDD1_3701 PF05593 RHS Repeat XDD1_3710 PF05593 RHS Repeat XDD1_3710 PF03527 RHS protein XDD1_3713 PF04717 Type VI secretion system, phage-baseplate injector XDD1_3717 PF08845 Toxin SymE, type I toxin-antitoxin system XDD1_3720 PF05593 RHS Repeat XDD1_3720 PF03527 RHS protein XDD1_3721 PF08845 Toxin SymE, type I toxin-antitoxin system XDD1_3733 PF05593 RHS Repeat XDD1_3733 PF03527 RHS protein XDD1_3736 PF04717 Type VI secretion system, phage-baseplate injector XDD1_3741 PF08845 Toxin SymE, type I toxin-antitoxin system XDD1_3745 PF05488 PAAR motif XDD1_3745 PF05593 RHS Repeat XDD1_3747 PF04717 Type VI secretion system, phage-baseplate injector XDD1_3756 PF17871 AAA lid domain XDD1_3756 PF10431 C-terminal, D2-small domain, of ClpB protein XDD1_3756 PF00004 ATPase family associated with various cellular activities (AAA) XDD1_3756 PF07724 AAA domain (Cdc48 subfamily) XDD1_3766 PF05638 Type VI secretion system effector, Hcp XDD1_3767 PF08479 POTRA domain, ShlB-type XDD1_3767 PF17287 POTRA domain XDD1_3767 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XDD1_3768 PF05860 haemagglutination activity domain XDD1_3768 PF13332 Hemagglutinin repeat XDD1_3769 PF03631 Virulence factor BrkB XDD1_3770 PF01361 Tautomerase enzyme XDD1_3773 PF04185 Phosphoesterase family XDD1_3773 PF05506 Domain of unknown function (DUF756) XDD1_3774 PF05193 Peptidase M16 inactive domain XDD1_3774 PF00675 Insulinase (Peptidase family M16) XDD1_3775 PF00563 EAL domain XDD1_3775 PF17154 Gammaproteobacterial periplasmic sensor domain XDD1_3775 PF00990 Diguanylate cyclase, GGDEF domain XDD1_3775 PF00672 HAMP domain XDD1_3776 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XDD1_3776 PF00005 ABC transporter XDD1_3777 PF00005 ABC transporter XDD1_3777 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XDD1_3778 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3778 PF12911 N-terminal TM domain of oligopeptide transport permease C XDD1_3779 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XDD1_3790 PF02092 Glycyl-tRNA synthetase beta subunit XDD1_3790 PF05746 DALR anticodon binding domain XDD1_3791 PF02091 Glycyl-tRNA synthetase alpha subunit XDD1_3792 PF03352 Methyladenine glycosylase XDD1_3793 PF13358 DDE superfamily endonuclease XDD1_3793 PF13592 Winged helix-turn helix XDD1_3794 PF13358 DDE superfamily endonuclease XDD1_3794 PF13592 Winged helix-turn helix XDD1_3797 PF00155 Aminotransferase class I and II XDD1_3798 PF07119 Protein of unknown function (DUF1375) XDD1_3799 PF12566 Protein of unknown function (DUF3748) XDD1_3799 PF07676 WD40-like Beta Propeller Repeat XDD1_3800 PF03458 UPF0126 domain XDD1_3802 PF03120 NAD-dependent DNA ligase OB-fold domain XDD1_3802 PF01653 NAD-dependent DNA ligase adenylation domain XDD1_3803 PF00625 Guanylate kinase XDD1_3804 PF01192 RNA polymerase Rpb6 XDD1_3805 PF13291 ACT domain XDD1_3805 PF04607 Region found in RelA / SpoT proteins XDD1_3805 PF02824 TGS domain XDD1_3806 PF00271 Helicase conserved C-terminal domain XDD1_3806 PF00270 DEAD/DEAH box helicase XDD1_3806 PF17191 RecG wedge domain XDD1_3807 PF07690 Major Facilitator Superfamily XDD1_3808 PF03616 Sodium/glutamate symporter XDD1_3809 PF00860 Permease family XDD1_3811 PF00583 Acetyltransferase (GNAT) family XDD1_3811 PF09500 Putative thioesterase (yiiD_Cterm) XDD1_3812 PF02580 D-Tyr-tRNA(Tyr) deacylase XDD1_3816 PF13419 Haloacid dehalogenase-like hydrolase XDD1_3819 PF07979 Intimin C-type lectin domain XDD1_3819 PF11924 Inverse autotransporter, beta-domain XDD1_3819 PF02369 Bacterial Ig-like domain (group 1) XDD1_3819 PF09134 Invasin, domain 3 XDD1_3823 PF13936 Helix-turn-helix domain XDD1_3823 PF00665 Integrase core domain XDD1_3824 PF02369 Bacterial Ig-like domain (group 1) XDD1_3824 PF11924 Inverse autotransporter, beta-domain XDD1_3824 PF09134 Invasin, domain 3 XDD1_3825 PF13358 DDE superfamily endonuclease XDD1_3833 PF03951 Glutamine synthetase, beta-Grasp domain XDD1_3833 PF00120 Glutamine synthetase, catalytic domain XDD1_3834 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3834 PF00512 His Kinase A (phospho-acceptor) domain XDD1_3835 PF00072 Response regulator receiver domain XDD1_3835 PF02954 Bacterial regulatory protein, Fis family XDD1_3835 PF00158 Sigma-54 interaction domain XDD1_3836 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XDD1_3840 PF04055 Radical SAM superfamily XDD1_3840 PF06969 HemN C-terminal domain XDD1_3841 PF04220 Der GTPase activator (YihI) XDD1_3843 PF00860 Permease family XDD1_3845 PF07690 Major Facilitator Superfamily XDD1_3848 PF05638 Type VI secretion system effector, Hcp XDD1_3849 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3850 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3851 PF00497 Bacterial extracellular solute-binding proteins, family 3 XDD1_3852 PF01895 PhoU domain XDD1_3853 PF00005 ABC transporter XDD1_3854 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3855 PF00528 Binding-protein-dependent transport system inner membrane component XDD1_3856 PF12849 PBP superfamily domain XDD1_3862 PF00512 His Kinase A (phospho-acceptor) domain XDD1_3862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XDD1_3862 PF00672 HAMP domain XDD1_3863 PF00486 Transcriptional regulatory protein, C terminal XDD1_3863 PF00072 Response regulator receiver domain XDD1_3864 PF03449 Transcription elongation factor, N-terminal XDD1_3864 PF01272 Transcription elongation factor, GreA/GreB, C-term XDD1_3865 PF09371 Tex-like protein N-terminal domain XDD1_3865 PF16921 Tex protein YqgF-like domain XDD1_3865 PF00575 S1 RNA binding domain XDD1_3865 PF17674 HHH domain XDD1_3866 PF04023 FeoA domain XDD1_3867 PF17910 FeoB cytosolic helical domain XDD1_3867 PF02421 Ferrous iron transport protein B XDD1_3867 PF07670 Nucleoside recognition XDD1_3867 PF07664 Ferrous iron transport protein B C terminus XDD1_3868 PF09012 FeoC like transcriptional regulator XDD1_3870 PF03466 LysR substrate binding domain XDD1_3870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XDD1_3874 PF00665 Integrase core domain XDD1_3874 PF13333 Integrase core domain XDD1_3874 PF13276 HTH-like domain XDD1_3875 PF13358 DDE superfamily endonuclease XDD1_3877 PF00551 Formyl transferase XDD1_3877 PF01370 NAD dependent epimerase/dehydratase family XDD1_3877 PF02911 Formyl transferase, C-terminal domain XDD1_3878 PF00550 Phosphopantetheine attachment site XDD1_3878 PF00668 Condensation domain XDD1_3878 PF13193 AMP-binding enzyme C-terminal domain XDD1_3878 PF00501 AMP-binding enzyme XDD1_3878 PF00975 Thioesterase domain XDD1_3882 PF00550 Phosphopantetheine attachment site XDD1_3882 PF00668 Condensation domain XDD1_3882 PF13193 AMP-binding enzyme C-terminal domain XDD1_3882 PF00501 AMP-binding enzyme XDD1_3882 PF18563 TubC N-terminal docking domain XDD1_3886 PF12897 Alanine-glyoxylate amino-transferase XDD1_3890 PF00561 alpha/beta hydrolase fold XDD1_3891 PF00156 Phosphoribosyl transferase domain XDD1_3892 PF01106 NifU-like domain XDD1_3892 PF01521 Iron-sulphur cluster biosynthesis XDD1_3893 PF00581 Rhodanese-like domain XDD1_3894 PF01694 Rhomboid family XDD1_3894 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease XDD1_3895 PF00455 DeoR C terminal sensor domain XDD1_3895 PF08220 DeoR-like helix-turn-helix domain XDD1_3896 PF01266 FAD dependent oxidoreductase XDD1_3896 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XDD1_3899 PF00962 Adenosine/AMP deaminase XDD1_3901 PF13358 DDE superfamily endonuclease XDD1_3904 PF14503 YhfZ C-terminal domain XDD1_3904 PF14502 Helix-turn-helix domain XDD1_3906 PF01168 Alanine racemase, N-terminal domain XDD1_3908 PF02126 Phosphotriesterase family XDD1_3909 PF10941 Protein of unknown function DUF2620 XDD1_3910 PF10797 Protein of unknown function XDD1_3911 PF00155 Aminotransferase class I and II XDD1_3914 PF05638 Type VI secretion system effector, Hcp XDD1_3917 PF01575 MaoC like domain XDD1_3917 PF00171 Aldehyde dehydrogenase family XDD1_3918 PF05138 Phenylacetic acid catabolic protein XDD1_3919 PF06243 Phenylacetic acid degradation B XDD1_3920 PF05138 Phenylacetic acid catabolic protein XDD1_3921 PF01883 Iron-sulfur cluster assembly protein XDD1_3922 PF00970 Oxidoreductase FAD-binding domain XDD1_3922 PF00111 2Fe-2S iron-sulfur cluster binding domain XDD1_3922 PF00175 Oxidoreductase NAD-binding domain XDD1_3923 PF00378 Enoyl-CoA hydratase/isomerase XDD1_3924 PF00378 Enoyl-CoA hydratase/isomerase XDD1_3925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XDD1_3925 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain XDD1_3925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XDD1_3926 PF03061 Thioesterase superfamily XDD1_3927 PF00108 Thiolase, N-terminal domain XDD1_3927 PF02803 Thiolase, C-terminal domain XDD1_3928 PF00501 AMP-binding enzyme XDD1_3928 PF14535 AMP-binding enzyme C-terminal domain XDD1_3929 PF07690 Major Facilitator Superfamily XDD1_3931 PF13358 DDE superfamily endonuclease XDD1_3937 PF07690 Major Facilitator Superfamily XDD1_3939 PF00294 pfkB family carbohydrate kinase XDD1_3941 PF00392 Bacterial regulatory proteins, gntR family XDD1_3941 PF07702 UTRA domain XDD1_3942 PF00884 Sulfatase XDD1_3943 PF01320 Colicin immunity protein / pyocin immunity protein XDD1_3944 PF03513 Cloacin immunity protein XDD1_3945 PF09106 Elongation factor SelB, winged helix XDD1_3945 PF09107 Elongation factor SelB, winged helix XDD1_3945 PF00009 Elongation factor Tu GTP binding domain XDD1_3945 PF03144 Elongation factor Tu domain 2 XDD1_3950 PF05638 Type VI secretion system effector, Hcp XDD1_3954 PF12390 Selenocysteine synthase N terminal XDD1_3954 PF03841 L-seryl-tRNA selenium transferase XDD1_3955 PF04216 Protein involved in formate dehydrogenase formation XDD1_3958 PF01292 Prokaryotic cytochrome b561 XDD1_3960 PF09163 Formate dehydrogenase N, transmembrane XDD1_3960 PF13247 4Fe-4S dicluster domain XDD1_3961 PF01568 Molydopterin dinucleotide binding domain XDD1_3961 PF00384 Molybdopterin oxidoreductase XDD1_3961 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XDD1_3962 PF01568 Molydopterin dinucleotide binding domain XDD1_3962 PF00384 Molybdopterin oxidoreductase XDD1_3962 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XDD1_3963 PF02634 FdhD/NarQ family XDD1_3970 PF03544 Gram-negative bacterial TonB protein C-terminal XDD1_3971 PF10396 GTP-binding protein TrmE N-terminus XDD1_3971 PF12631 MnmE helical domain XDD1_3971 PF01926 50S ribosome-binding GTPase XDD1_3972 PF14849 YidC periplasmic domain XDD1_3972 PF02096 60Kd inner membrane protein XDD1_3973 PF01809 Putative membrane protein insertion efficiency factor XDD1_3974 PF00825 Ribonuclease P XDD1_p0001 PF13693 Winged helix-turn-helix DNA-binding