XDD1_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain XDD1_0002 SM00480 DNA polymerase III beta subunit XDD1_0004 SM00387 Histidine kinase-like ATPases XDD1_0004 SM00433 TopoisomeraseII XDD1_0009 SM00859 Semialdehyde dehydrogenase, NAD binding domain XDD1_0034 SM00382 ATPases associated with a variety of cellular activities XDD1_0043 SM01228 XDD1_0043 XDD1_0045 SM00344 helix_turn_helix ASNC type XDD1_0047 SM00327 von Willebrand factor (vWF) type A domain XDD1_0048 SM00382 ATPases associated with a variety of cellular activities XDD1_0049 SM00382 ATPases associated with a variety of cellular activities XDD1_0053 SM00354 helix_turn _helix lactose operon repressor XDD1_0079 SM00363 S4 RNA-binding domain XDD1_0096 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XDD1_0104 SM00642 Alpha-amylase domain XDD1_0132 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XDD1_0132 SM01232 XDD1_0132 XDD1_0148 SM00829 Enoylreductase XDD1_0153 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0155 SM00450 Rhodanese Homology Domain XDD1_0158 SM00971 Serine acetyltransferase, N-terminal XDD1_0171 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_0171 SM00387 Histidine kinase-like ATPases XDD1_0171 SM00388 His Kinase A (phosphoacceptor) domain XDD1_0172 SM00448 cheY-homologous receiver domain XDD1_0172 SM00862 Transcriptional regulatory protein, C terminal XDD1_0195 SM00382 ATPases associated with a variety of cellular activities XDD1_0195 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_0198 SM00354 helix_turn _helix lactose operon repressor XDD1_0199 SM00487 DEAD-like helicases superfamily XDD1_0199 SM00490 helicase superfamily c-terminal domain XDD1_0216 SM00859 Semialdehyde dehydrogenase, NAD binding domain XDD1_0279 SM01403 XDD1_0279 XDD1_0283 SM01382 XDD1_0283 XDD1_0283 SM01383 XDD1_0283 XDD1_0286 SM00322 K homology RNA-binding domain XDD1_0290 SM01374 XDD1_0290 XDD1_0291 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XDD1_0304 SM00363 S4 RNA-binding domain XDD1_0304 SM01390 XDD1_0304 XDD1_0305 SM00662 RNA polymerases D XDD1_0307 SM00422 helix_turn_helix, mercury resistance XDD1_0328 SM00382 ATPases associated with a variety of cellular activities XDD1_0336 SM00342 helix_turn_helix, arabinose operon control protein XDD1_0342 SM00487 DEAD-like helicases superfamily XDD1_0342 SM00490 helicase superfamily c-terminal domain XDD1_0345 SM00357 Cold shock protein domain XDD1_0345 SM00382 ATPases associated with a variety of cellular activities XDD1_0345 SM00959 Rho termination factor, N-terminal domain XDD1_0349 SM00984 UDP binding domain XDD1_0366 SM01219 XDD1_0366 XDD1_0374 SM00966 SpoVT / AbrB like domain XDD1_0381 SM00341 Helicase and RNase D C-terminal XDD1_0381 SM00487 DEAD-like helicases superfamily XDD1_0381 SM00490 helicase superfamily c-terminal domain XDD1_0381 SM00956 XDD1_0381 XDD1_0386 SM00354 helix_turn _helix lactose operon repressor XDD1_0391 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_0401 SM00479 XDD1_0401 XDD1_0417 SM00646 XDD1_0417 XDD1_0418 SM00853 MutL C terminal dimerisation domain XDD1_0418 SM01340 XDD1_0418 XDD1_0424 SM00244 prohibitin homologues XDD1_0425 SM00244 prohibitin homologues XDD1_0426 SM00788 Adenylosuccinate synthetase XDD1_0428 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_0428 SM00357 Cold shock protein domain XDD1_0428 SM00955 XDD1_0428 XDD1_0430 SM00967 RNA 2'-O ribose methyltransferase substrate binding XDD1_0470 SM01103 XDD1_0470 XDD1_0472 SM00382 ATPases associated with a variety of cellular activities XDD1_0477 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_0481 SM01387 XDD1_0481 XDD1_0482 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_0482 SM00322 K homology RNA-binding domain XDD1_0483 SM00028 Tetratricopeptide repeats XDD1_0484 SM00487 DEAD-like helicases superfamily XDD1_0484 SM00490 helicase superfamily c-terminal domain XDD1_0487 SM00448 cheY-homologous receiver domain XDD1_0487 SM00850 LytTr DNA-binding domain XDD1_0488 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XDD1_0489 SM00257 Lysin motif XDD1_0519 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_0521 SM00382 ATPases associated with a variety of cellular activities XDD1_0522 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_0548 SM00634 Bacterial Ig-like domain (group 1) XDD1_0557 SM00966 SpoVT / AbrB like domain XDD1_0564 SM00903 Flavin reductase like domain XDD1_0569 SM00382 ATPases associated with a variety of cellular activities XDD1_0571 SM00327 von Willebrand factor (vWF) type A domain XDD1_0572 SM00342 helix_turn_helix, arabinose operon control protein XDD1_0587 SM00347 helix_turn_helix multiple antibiotic resistance protein XDD1_0593 SM01101 XDD1_0593 XDD1_0598 SM00487 DEAD-like helicases superfamily XDD1_0606 SM00354 helix_turn _helix lactose operon repressor XDD1_0610 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0618 SM00047 Lysozyme subfamily 2 XDD1_0621 SM00822 XDD1_0621 XDD1_0646 SM00883 Chaperonin 10 Kd subunit XDD1_0650 SM00841 Elongation factor P, C-terminal XDD1_0650 SM01185 XDD1_0650 XDD1_0653 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0658 SM00098 Alkaline phosphatase homologues XDD1_0681 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0686 SM00849 Metallo-beta-lactamase superfamily XDD1_0689 SM00014 Acid phosphatase homologues XDD1_0692 SM00382 ATPases associated with a variety of cellular activities XDD1_0696 SM00382 ATPases associated with a variety of cellular activities XDD1_0702 SM00387 Histidine kinase-like ATPases XDD1_0724 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0727 SM00749 bacterial OsmY and nodulation domain XDD1_0731 SM01133 XDD1_0731 XDD1_0732 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain XDD1_0740 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0742 SM00851 MGS-like domain XDD1_0742 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XDD1_0743 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XDD1_0754 SM00904 Riboflavin kinase XDD1_0759 SM00271 DnaJ molecular chaperone homology domain XDD1_0774 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XDD1_0774 SM00450 Rhodanese Homology Domain XDD1_0775 SM00852 Probable molybdopterin binding domain XDD1_0781 SM00448 cheY-homologous receiver domain XDD1_0781 SM00862 Transcriptional regulatory protein, C terminal XDD1_0784 SM00342 helix_turn_helix, arabinose operon control protein XDD1_0784 SM00871 Bacterial transcription activator, effector binding domain XDD1_0785 SM00855 Phosphoglycerate mutase family XDD1_0789 SM00382 ATPases associated with a variety of cellular activities XDD1_0791 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0792 SM00382 ATPases associated with a variety of cellular activities XDD1_0824 SM00448 cheY-homologous receiver domain XDD1_0824 SM00862 Transcriptional regulatory protein, C terminal XDD1_0825 SM00091 PAS domain XDD1_0825 SM00387 Histidine kinase-like ATPases XDD1_0825 SM00388 His Kinase A (phosphoacceptor) domain XDD1_0834 SM01323 XDD1_0834 XDD1_0845 SM00421 helix_turn_helix, Lux Regulon XDD1_0849 SM00354 helix_turn _helix lactose operon repressor XDD1_0851 SM00421 helix_turn_helix, Lux Regulon XDD1_0857 SM00861 Transketolase, pyrimidine binding domain XDD1_0860 SM00981 XDD1_0860 XDD1_0877 SM00382 ATPases associated with a variety of cellular activities XDD1_0877 SM00994 ClpX C4-type zinc finger XDD1_0877 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_0878 SM00382 ATPases associated with a variety of cellular activities XDD1_0878 SM00464 Found in ATP-dependent protease La (LON) XDD1_0879 SM00411 bacterial (prokaryotic) histone like domain XDD1_0886 SM00344 helix_turn_helix ASNC type XDD1_0887 SM00382 ATPases associated with a variety of cellular activities XDD1_0888 SM00382 ATPases associated with a variety of cellular activities XDD1_0889 SM00938 Nitrogen regulatory protein P-II XDD1_0904 SM00382 ATPases associated with a variety of cellular activities XDD1_0907 SM00493 XDD1_0907 XDD1_0908 SM00387 Histidine kinase-like ATPases XDD1_0922 SM00422 helix_turn_helix, mercury resistance XDD1_0924 SM00244 prohibitin homologues XDD1_0926 SM00822 XDD1_0926 XDD1_0928 SM00382 ATPases associated with a variety of cellular activities XDD1_0938 SM01001 AIR carboxylase XDD1_0942 SM00840 XDD1_0942 XDD1_0948 SM00530 Helix-turn-helix XRE-family like proteins XDD1_0976 SM00849 Metallo-beta-lactamase superfamily XDD1_0979 SM00257 Lysin motif XDD1_0980 SM00849 Metallo-beta-lactamase superfamily XDD1_0983 SM00479 XDD1_0983 XDD1_0987 SM00861 Transketolase, pyrimidine binding domain XDD1_0988 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XDD1_1012 SM00903 Flavin reductase like domain XDD1_1017 SM00342 helix_turn_helix, arabinose operon control protein XDD1_1028 SM00347 helix_turn_helix multiple antibiotic resistance protein XDD1_1029 SM00829 Enoylreductase XDD1_1045 SM00421 helix_turn_helix, Lux Regulon XDD1_1048 SM00342 helix_turn_helix, arabinose operon control protein XDD1_1048 SM00871 Bacterial transcription activator, effector binding domain XDD1_1061 SM00778 Zinc-binding domain of primase-helicase XDD1_1067 SM00382 ATPases associated with a variety of cellular activities XDD1_1075 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XDD1_1075 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XDD1_1075 SM00493 XDD1_1075 XDD1_1100 SM00634 Bacterial Ig-like domain (group 1) XDD1_1119 SM00912 haemagglutination activity domain XDD1_1135 SM00478 endonuclease III XDD1_1135 SM00525 XDD1_1135 XDD1_1150 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_1156 SM00732 Likely ribonuclease with RNase H fold. XDD1_1162 SM00849 Metallo-beta-lactamase superfamily XDD1_1173 SM00900 XDD1_1173 XDD1_1192 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XDD1_1195 SM00563 Phosphate acyltransferases XDD1_1198 SM00382 ATPases associated with a variety of cellular activities XDD1_1200 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_1204 SM01091 Transporter associated domain XDD1_1206 SM00382 ATPases associated with a variety of cellular activities XDD1_1206 SM00962 SRP54-type protein, GTPase domain XDD1_1206 SM00963 SRP54-type protein, helical bundle domain XDD1_1217 SM00830 Chorismate mutase type II XDD1_1218 SM00830 Chorismate mutase type II XDD1_1221 SM00363 S4 RNA-binding domain XDD1_1223 SM00382 ATPases associated with a variety of cellular activities XDD1_1223 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_1231 SM00155 Phospholipase D. Active site motifs. XDD1_1232 SM00881 CoA binding domain XDD1_1233 SM01144 XDD1_1233 XDD1_1234 SM00967 RNA 2'-O ribose methyltransferase substrate binding XDD1_1241 SM00382 ATPases associated with a variety of cellular activities XDD1_1245 SM01006 Siderophore biosynthesis protein domain XDD1_1249 SM00347 helix_turn_helix multiple antibiotic resistance protein XDD1_1256 SM00382 ATPases associated with a variety of cellular activities XDD1_1260 SM00357 Cold shock protein domain XDD1_1262 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_1267 SM00936 Penicillin-binding protein 5, C-terminal domain XDD1_1278 SM00382 ATPases associated with a variety of cellular activities XDD1_1281 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_1290 SM00116 Domain in cystathionine beta-synthase and other proteins. XDD1_1290 SM01091 Transporter associated domain XDD1_1293 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_1301 SM01081 Putative carbohydrate binding domain XDD1_1307 SM00342 helix_turn_helix, arabinose operon control protein XDD1_1308 SM00382 ATPases associated with a variety of cellular activities XDD1_1310 SM00382 ATPases associated with a variety of cellular activities XDD1_1326 SM00388 His Kinase A (phosphoacceptor) domain XDD1_1335 SM00342 helix_turn_helix, arabinose operon control protein XDD1_1342 SM00861 Transketolase, pyrimidine binding domain XDD1_1345 SM00881 CoA binding domain XDD1_1360 SM00855 Phosphoglycerate mutase family XDD1_1362 SM00382 ATPases associated with a variety of cellular activities XDD1_1367 SM00382 ATPases associated with a variety of cellular activities XDD1_1377 SM00382 ATPases associated with a variety of cellular activities XDD1_1384 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XDD1_1384 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XDD1_1384 SM00493 XDD1_1384 XDD1_1410 SM00382 ATPases associated with a variety of cellular activities XDD1_1414 SM00487 DEAD-like helicases superfamily XDD1_1414 SM00490 helicase superfamily c-terminal domain XDD1_1420 SM00450 Rhodanese Homology Domain XDD1_1422 SM00487 DEAD-like helicases superfamily XDD1_1422 SM00488 XDD1_1422 XDD1_1422 SM00491 XDD1_1422 XDD1_1434 SM00382 ATPases associated with a variety of cellular activities XDD1_1436 SM00852 Probable molybdopterin binding domain XDD1_1441 SM00919 Malic enzyme, NAD binding domain XDD1_1441 SM01274 XDD1_1441 XDD1_1469 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_1471 SM00487 DEAD-like helicases superfamily XDD1_1471 SM00490 helicase superfamily c-terminal domain XDD1_1475 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_1475 SM00876 Biotin and Thiamin Synthesis associated domain XDD1_1494 SM00530 Helix-turn-helix XRE-family like proteins XDD1_1495 SM00400 zinc finger XDD1_1495 SM00493 XDD1_1495 XDD1_1517 SM01091 Transporter associated domain XDD1_1518 SM01350 XDD1_1518 XDD1_1532 SM00936 Penicillin-binding protein 5, C-terminal domain XDD1_1534 SM00014 Acid phosphatase homologues XDD1_1542 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_1542 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XDD1_1543 SM00382 ATPases associated with a variety of cellular activities XDD1_1547 SM00382 ATPases associated with a variety of cellular activities XDD1_1548 SM00357 Cold shock protein domain XDD1_1550 SM00382 ATPases associated with a variety of cellular activities XDD1_1550 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_1551 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_1553 SM00382 ATPases associated with a variety of cellular activities XDD1_1554 SM00382 ATPases associated with a variety of cellular activities XDD1_1557 SM00344 helix_turn_helix ASNC type XDD1_1558 SM00843 XDD1_1558 XDD1_1560 SM00382 ATPases associated with a variety of cellular activities XDD1_1569 SM00870 XDD1_1569 XDD1_1574 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_1575 SM00411 bacterial (prokaryotic) histone like domain XDD1_1576 SM00849 Metallo-beta-lactamase superfamily XDD1_1577 SM00382 ATPases associated with a variety of cellular activities XDD1_1589 SM00849 Metallo-beta-lactamase superfamily XDD1_1599 SM00981 XDD1_1599 XDD1_1600 SM00382 ATPases associated with a variety of cellular activities XDD1_1613 SM00855 Phosphoglycerate mutase family XDD1_1626 SM00869 Autotransporter beta-domain XDD1_1636 SM00881 CoA binding domain XDD1_1637 SM00992 Hemimethylated DNA-binding protein YccV like XDD1_1674 SM00421 helix_turn_helix, Lux Regulon XDD1_1674 SM00448 cheY-homologous receiver domain XDD1_1675 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XDD1_1675 SM00465 GIY-YIG type nucleases (URI domain) XDD1_1682 SM00778 Zinc-binding domain of primase-helicase XDD1_1682 SM00885 D5 N terminal like XDD1_1700 SM00530 Helix-turn-helix XRE-family like proteins XDD1_1723 SM00421 helix_turn_helix, Lux Regulon XDD1_1723 SM00448 cheY-homologous receiver domain XDD1_1724 SM00387 Histidine kinase-like ATPases XDD1_1746 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XDD1_1747 SM00945 ProQ/FINO family XDD1_1748 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XDD1_1748 SM00245 tail specific protease XDD1_1759 SM00382 ATPases associated with a variety of cellular activities XDD1_1763 SM00634 Bacterial Ig-like domain (group 1) XDD1_1772 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XDD1_1777 SM00873 B3/4 domain XDD1_1777 SM00874 tRNA synthetase B5 domain XDD1_1777 SM00896 Ferredoxin-fold anticodon binding domain XDD1_1778 SM00411 bacterial (prokaryotic) histone like domain XDD1_1787 SM01321 XDD1_1787 XDD1_1791 SM00823 Phosphopantetheine attachment site XDD1_1796 SM00822 XDD1_1796 XDD1_1796 SM00823 Phosphopantetheine attachment site XDD1_1796 SM00825 Beta-ketoacyl synthase XDD1_1796 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_1798 SM00822 XDD1_1798 XDD1_1798 SM00825 Beta-ketoacyl synthase XDD1_1798 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_1802 SM00822 XDD1_1802 XDD1_1802 SM00825 Beta-ketoacyl synthase XDD1_1802 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_1809 SM00382 ATPases associated with a variety of cellular activities XDD1_1820 SM00400 zinc finger XDD1_1821 SM00530 Helix-turn-helix XRE-family like proteins XDD1_1826 SM00400 zinc finger XDD1_1827 SM00530 Helix-turn-helix XRE-family like proteins XDD1_1830 SM00860 SMI1 / KNR4 family XDD1_1834 SM00400 zinc finger XDD1_1835 SM00530 Helix-turn-helix XRE-family like proteins XDD1_1838 SM00860 SMI1 / KNR4 family XDD1_1857 SM00354 helix_turn _helix lactose operon repressor XDD1_1860 SM00479 XDD1_1860 XDD1_1863 SM00347 helix_turn_helix multiple antibiotic resistance protein XDD1_1867 SM00363 S4 RNA-binding domain XDD1_1870 SM00382 ATPases associated with a variety of cellular activities XDD1_1871 SM00382 ATPases associated with a variety of cellular activities XDD1_1875 SM00382 ATPases associated with a variety of cellular activities XDD1_1881 SM00091 PAS domain XDD1_1881 SM00382 ATPases associated with a variety of cellular activities XDD1_1884 SM00382 ATPases associated with a variety of cellular activities XDD1_1884 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_1906 SM00823 Phosphopantetheine attachment site XDD1_1907 SM00823 Phosphopantetheine attachment site XDD1_1908 SM00823 Phosphopantetheine attachment site XDD1_1914 SM00382 ATPases associated with a variety of cellular activities XDD1_1916 SM00220 Serine/Threonine protein kinases, catalytic domain XDD1_1922 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_1922 SM00895 XDD1_1922 XDD1_1930 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XDD1_1972 SM00382 ATPases associated with a variety of cellular activities XDD1_1983 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_1994 SM00342 helix_turn_helix, arabinose operon control protein XDD1_1998 SM00869 Autotransporter beta-domain XDD1_1999 SM00869 Autotransporter beta-domain XDD1_2000 SM01400 XDD1_2000 XDD1_2004 SM00937 XDD1_2004 XDD1_2009 SM00195 Dual specificity phosphatase, catalytic domain XDD1_2029 SM00220 Serine/Threonine protein kinases, catalytic domain XDD1_2030 SM00382 ATPases associated with a variety of cellular activities XDD1_2030 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_2054 SM00836 DALR anticodon binding domain XDD1_2054 SM01016 Arginyl tRNA synthetase N terminal dom XDD1_2065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XDD1_2066 SM00382 ATPases associated with a variety of cellular activities XDD1_2070 SM00382 ATPases associated with a variety of cellular activities XDD1_2081 SM00487 DEAD-like helicases superfamily XDD1_2081 SM00491 XDD1_2081 XDD1_2085 SM00341 Helicase and RNase D C-terminal XDD1_2085 SM00474 3'-5' exonuclease XDD1_2101 SM00382 ATPases associated with a variety of cellular activities XDD1_2101 SM00487 DEAD-like helicases superfamily XDD1_2101 SM00490 helicase superfamily c-terminal domain XDD1_2101 SM00847 Helicase associated domain (HA2) Add an annotation XDD1_2110 SM01002 Alanine dehydrogenase/PNT, C-terminal domain XDD1_2110 SM01003 Alanine dehydrogenase/PNT, N-terminal domain XDD1_2113 SM00382 ATPases associated with a variety of cellular activities XDD1_2129 SM00100 Cyclic nucleotide-monophosphate binding domain XDD1_2129 SM00419 helix_turn_helix, cAMP Regulatory protein XDD1_2144 SM00869 Autotransporter beta-domain XDD1_2145 SM00530 Helix-turn-helix XRE-family like proteins XDD1_2150 SM00347 helix_turn_helix multiple antibiotic resistance protein XDD1_2155 SM01022 XDD1_2155 XDD1_2165 SM00342 helix_turn_helix, arabinose operon control protein XDD1_2169 SM00382 ATPases associated with a variety of cellular activities XDD1_2191 SM00900 XDD1_2191 XDD1_2194 SM00478 endonuclease III XDD1_2194 SM00525 XDD1_2194 XDD1_2195 SM00357 Cold shock protein domain XDD1_2195 SM00955 XDD1_2195 XDD1_2198 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XDD1_2199 SM00028 Tetratricopeptide repeats XDD1_2207 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XDD1_2207 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XDD1_2207 SM00493 XDD1_2207 XDD1_2212 SM00363 S4 RNA-binding domain XDD1_2214 SM00481 DNA polymerase alpha chain like domain XDD1_2228 SM00155 Phospholipase D. Active site motifs. XDD1_2230 SM00382 ATPases associated with a variety of cellular activities XDD1_2231 SM00382 ATPases associated with a variety of cellular activities XDD1_2238 SM00528 Domain in histone-like proteins of HNS family XDD1_2240 SM00984 UDP binding domain XDD1_2247 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XDD1_2247 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XDD1_2247 SM00493 XDD1_2247 XDD1_2251 SM00870 XDD1_2251 XDD1_2254 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XDD1_2256 SM01005 Alanine racemase, C-terminal domain XDD1_2258 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_2281 SM00823 Phosphopantetheine attachment site XDD1_2282 SM00823 Phosphopantetheine attachment site XDD1_2283 SM00823 Phosphopantetheine attachment site XDD1_2283 SM00824 Thioesterase XDD1_2286 SM00823 Phosphopantetheine attachment site XDD1_2288 SM00823 Phosphopantetheine attachment site XDD1_2288 SM00824 Thioesterase XDD1_2291 SM00829 Enoylreductase XDD1_2293 SM00382 ATPases associated with a variety of cellular activities XDD1_2313 SM00382 ATPases associated with a variety of cellular activities XDD1_2325 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XDD1_2331 SM00047 Lysozyme subfamily 2 XDD1_2355 SM00857 Resolvase, N terminal domain XDD1_2368 SM00448 cheY-homologous receiver domain XDD1_2369 SM00448 cheY-homologous receiver domain XDD1_2370 SM00138 Methyltransferase, chemotaxis proteins XDD1_2371 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XDD1_2371 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_2371 SM00319 Homologues of the ligand binding domain of Tar XDD1_2372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XDD1_2372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_2372 SM00319 Homologues of the ligand binding domain of Tar XDD1_2373 SM00260 Two component signalling adaptor domain XDD1_2374 SM00073 Histidine Phosphotransfer domain XDD1_2374 SM00260 Two component signalling adaptor domain XDD1_2374 SM00387 Histidine kinase-like ATPases XDD1_2374 SM01231 XDD1_2374 XDD1_2379 SM00831 Cation transporter/ATPase, N-terminus XDD1_2381 SM00357 Cold shock protein domain XDD1_2386 SM00421 helix_turn_helix, Lux Regulon XDD1_2387 SM00450 Rhodanese Homology Domain XDD1_2394 SM00116 Domain in cystathionine beta-synthase and other proteins. XDD1_2394 SM01240 XDD1_2394 XDD1_2405 SM00919 Malic enzyme, NAD binding domain XDD1_2405 SM01274 XDD1_2405 XDD1_2408 SM00421 helix_turn_helix, Lux Regulon XDD1_2408 SM00448 cheY-homologous receiver domain XDD1_2416 SM01130 XDD1_2416 XDD1_2434 SM00116 Domain in cystathionine beta-synthase and other proteins. XDD1_2434 SM00924 MgtE intracellular N domain XDD1_2457 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_2457 SM00387 Histidine kinase-like ATPases XDD1_2457 SM00388 His Kinase A (phosphoacceptor) domain XDD1_2458 SM00448 cheY-homologous receiver domain XDD1_2458 SM00862 Transcriptional regulatory protein, C terminal XDD1_2462 SM01133 XDD1_2462 XDD1_2464 SM00357 Cold shock protein domain XDD1_2467 SM00342 helix_turn_helix, arabinose operon control protein XDD1_2468 SM00644 XDD1_2468 XDD1_2473 SM01329 XDD1_2473 XDD1_2480 SM00448 cheY-homologous receiver domain XDD1_2480 SM00862 Transcriptional regulatory protein, C terminal XDD1_2481 SM00387 Histidine kinase-like ATPases XDD1_2482 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XDD1_2486 SM00382 ATPases associated with a variety of cellular activities XDD1_2488 SM00487 DEAD-like helicases superfamily XDD1_2488 SM00490 helicase superfamily c-terminal domain XDD1_2488 SM00982 XDD1_2488 XDD1_2488 SM01058 CarD-like/TRCF domain XDD1_2501 SM00825 Beta-ketoacyl synthase XDD1_2503 SM00822 XDD1_2503 XDD1_2504 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_2510 SM00363 S4 RNA-binding domain XDD1_2511 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_2514 SM00479 XDD1_2514 XDD1_2518 SM00382 ATPases associated with a variety of cellular activities XDD1_2525 SM00518 AP endonuclease family 2 XDD1_2529 SM00841 Elongation factor P, C-terminal XDD1_2529 SM01185 XDD1_2529 XDD1_2533 SM00014 Acid phosphatase homologues XDD1_2538 SM00363 S4 RNA-binding domain XDD1_2539 SM00487 DEAD-like helicases superfamily XDD1_2539 SM00490 helicase superfamily c-terminal domain XDD1_2555 SM00644 XDD1_2555 XDD1_2559 SM00434 DNA Topoisomerase IV XDD1_2560 SM00387 Histidine kinase-like ATPases XDD1_2560 SM00388 His Kinase A (phosphoacceptor) domain XDD1_2560 SM00448 cheY-homologous receiver domain XDD1_2561 SM00421 helix_turn_helix, Lux Regulon XDD1_2561 SM00448 cheY-homologous receiver domain XDD1_2562 SM00387 Histidine kinase-like ATPases XDD1_2567 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XDD1_2577 SM00267 diguanylate cyclase XDD1_2579 SM00052 Putative diguanylate phosphodiesterase XDD1_2590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XDD1_2590 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XDD1_2591 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XDD1_2599 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XDD1_2606 SM00823 Phosphopantetheine attachment site XDD1_2611 SM00470 ParB-like nuclease domain XDD1_2612 SM00857 Resolvase, N terminal domain XDD1_2624 SM00463 Small MutS-related domain XDD1_2627 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_2627 SM00866 XDD1_2627 XDD1_2640 SM00825 Beta-ketoacyl synthase XDD1_2645 SM00448 cheY-homologous receiver domain XDD1_2645 SM00862 Transcriptional regulatory protein, C terminal XDD1_2646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_2646 SM00387 Histidine kinase-like ATPases XDD1_2646 SM00388 His Kinase A (phosphoacceptor) domain XDD1_2648 SM00342 helix_turn_helix, arabinose operon control protein XDD1_2650 SM00859 Semialdehyde dehydrogenase, NAD binding domain XDD1_2668 SM00823 Phosphopantetheine attachment site XDD1_2669 SM00382 ATPases associated with a variety of cellular activities XDD1_2696 SM01007 Class II Aldolase and Adducin N-terminal domain XDD1_2701 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XDD1_2701 SM00292 breast cancer carboxy-terminal domain XDD1_2701 SM00532 Ligase N family XDD1_2702 SM00771 ZipA, C-terminal domain (FtsZ-binding) XDD1_2711 SM00822 XDD1_2711 XDD1_2711 SM00825 Beta-ketoacyl synthase XDD1_2712 SM00823 Phosphopantetheine attachment site XDD1_2715 SM00822 XDD1_2715 XDD1_2715 SM00823 Phosphopantetheine attachment site XDD1_2715 SM00825 Beta-ketoacyl synthase XDD1_2715 SM00826 XDD1_2715 XDD1_2715 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_2715 SM00829 Enoylreductase XDD1_2717 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XDD1_2727 SM00382 ATPases associated with a variety of cellular activities XDD1_2733 SM00382 ATPases associated with a variety of cellular activities XDD1_2745 SM00778 Zinc-binding domain of primase-helicase XDD1_2745 SM00885 D5 N terminal like XDD1_2767 SM00564 beta-propeller repeat XDD1_2771 SM00530 Helix-turn-helix XRE-family like proteins XDD1_2772 SM00028 Tetratricopeptide repeats XDD1_2774 SM00562 XDD1_2774 XDD1_2775 SM00530 Helix-turn-helix XRE-family like proteins XDD1_2778 SM01359 XDD1_2778 XDD1_2778 SM01360 XDD1_2778 XDD1_2784 SM00271 DnaJ molecular chaperone homology domain XDD1_2794 SM00938 Nitrogen regulatory protein P-II XDD1_2796 SM00382 ATPases associated with a variety of cellular activities XDD1_2796 SM00448 cheY-homologous receiver domain XDD1_2798 SM00387 Histidine kinase-like ATPases XDD1_2798 SM00388 His Kinase A (phosphoacceptor) domain XDD1_2799 SM01211 XDD1_2799 XDD1_2800 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_2802 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XDD1_2803 SM00478 endonuclease III XDD1_2810 SM00358 Double-stranded RNA binding motif XDD1_2810 SM00535 Ribonuclease III family XDD1_2818 SM00487 DEAD-like helicases superfamily XDD1_2818 SM00490 helicase superfamily c-terminal domain XDD1_2821 SM00986 Uracil DNA glycosylase superfamily XDD1_2821 SM00987 UreE urease accessory protein, C-terminal domain XDD1_2877 SM01059 Chloramphenicol acetyltransferase XDD1_2881 SM00382 ATPases associated with a variety of cellular activities XDD1_2890 SM00867 YceI-like domain XDD1_2929 SM00342 helix_turn_helix, arabinose operon control protein XDD1_2950 SM00487 DEAD-like helicases superfamily XDD1_2952 SM00937 XDD1_2952 XDD1_2962 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_2977 SM01011 Aminopeptidase P, N-terminal domain XDD1_2997 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_2997 SM00895 XDD1_2997 XDD1_3002 SM00644 XDD1_3002 XDD1_3004 SM00382 ATPases associated with a variety of cellular activities XDD1_3009 SM00957 SecA DEAD-like domain XDD1_3009 SM00958 SecA preprotein cross-linking domain XDD1_3013 SM00864 Tubulin/FtsZ family, GTPase domain XDD1_3013 SM00865 Tubulin/FtsZ family, C-terminal domain XDD1_3014 SM00842 Cell division protein FtsA XDD1_3028 SM00354 helix_turn _helix lactose operon repressor XDD1_3033 SM00917 LeuA allosteric (dimerisation) domain XDD1_3034 SM01329 XDD1_3034 XDD1_3036 SM00927 DNA mismatch repair enzyme MutH XDD1_3040 SM00116 Domain in cystathionine beta-synthase and other proteins. XDD1_3051 SM00382 ATPases associated with a variety of cellular activities XDD1_3059 SM00833 Cobalamin synthesis protein cobW C-terminal domain XDD1_3068 SM00387 Histidine kinase-like ATPases XDD1_3069 SM00421 helix_turn_helix, Lux Regulon XDD1_3069 SM00448 cheY-homologous receiver domain XDD1_3078 SM00778 Zinc-binding domain of primase-helicase XDD1_3078 SM00885 D5 N terminal like XDD1_3099 SM00947 Carbonic anhydrase XDD1_3100 SM00382 ATPases associated with a variety of cellular activities XDD1_3109 SM00487 DEAD-like helicases superfamily XDD1_3109 SM00490 helicase superfamily c-terminal domain XDD1_3109 SM00847 Helicase associated domain (HA2) Add an annotation XDD1_3123 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XDD1_3124 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XDD1_3124 SM00387 Histidine kinase-like ATPases XDD1_3124 SM00388 His Kinase A (phosphoacceptor) domain XDD1_3124 SM00448 cheY-homologous receiver domain XDD1_3126 SM00954 Region found in RelA / SpoT proteins XDD1_3129 SM01192 XDD1_3129 XDD1_3129 SM01193 XDD1_3129 XDD1_3137 SM00731 SprT homologues. XDD1_3156 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XDD1_3156 SM00534 ATPase domain of DNA mismatch repair MUTS family XDD1_3159 SM00257 Lysin motif XDD1_3192 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XDD1_3193 SM01004 Delta-aminolevulinic acid dehydratase XDD1_3207 SM00420 helix_turn_helix, Deoxyribose operon repressor XDD1_3207 SM01134 XDD1_3207 XDD1_3221 SM00953 XDD1_3221 XDD1_3231 SM01005 Alanine racemase, C-terminal domain XDD1_3232 SM00382 ATPases associated with a variety of cellular activities XDD1_3253 SM00829 Enoylreductase XDD1_3259 SM00563 Phosphate acyltransferases XDD1_3264 SM00530 Helix-turn-helix XRE-family like proteins XDD1_3267 SM00346 helix_turn_helix isocitrate lyase regulation XDD1_3278 SM00382 ATPases associated with a variety of cellular activities XDD1_3278 SM00930 XDD1_3278 XDD1_3288 SM00977 TilS substrate C-terminal domain XDD1_3291 SM00481 DNA polymerase alpha chain like domain XDD1_3297 SM00935 Outer membrane protein (OmpH-like) XDD1_3299 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XDD1_3308 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XDD1_3323 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XDD1_3323 SM00475 5'-3' exonuclease XDD1_3326 SM00382 ATPases associated with a variety of cellular activities XDD1_3329 SM00235 Zinc-dependent metalloprotease XDD1_3357 SM00925 MltA specific insert domain XDD1_3358 SM00646 XDD1_3358 XDD1_3373 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XDD1_3377 SM00382 ATPases associated with a variety of cellular activities XDD1_3378 SM00671 Sel1-like repeats. XDD1_3379 SM00671 Sel1-like repeats. XDD1_3381 SM00486 DNA polymerase type-B family XDD1_3382 SM00487 DEAD-like helicases superfamily XDD1_3382 SM00490 helicase superfamily c-terminal domain XDD1_3384 SM00271 DnaJ molecular chaperone homology domain XDD1_3389 SM00650 Ribosomal RNA adenine dimethylases XDD1_3394 SM00563 Phosphate acyltransferases XDD1_3396 SM00434 DNA Topoisomerase IV XDD1_3397 SM00387 Histidine kinase-like ATPases XDD1_3397 SM00433 TopoisomeraseII XDD1_3409 SM01118 XDD1_3409 XDD1_3410 SM00287 Bacterial SH3 domain homologues XDD1_3412 SM00905 Dihydroneopterin aldolase XDD1_3413 SM01207 XDD1_3413 XDD1_3416 SM00400 zinc finger XDD1_3416 SM00493 XDD1_3416 XDD1_3416 SM00766 DNA primase DnaG DnaB-binding XDD1_3461 SM00563 Phosphate acyltransferases XDD1_3472 SM00825 Beta-ketoacyl synthase XDD1_3475 SM00825 Beta-ketoacyl synthase XDD1_3494 SM00749 bacterial OsmY and nodulation domain XDD1_3503 SM00073 Histidine Phosphotransfer domain XDD1_3503 SM00091 PAS domain XDD1_3503 SM00387 Histidine kinase-like ATPases XDD1_3503 SM00388 His Kinase A (phosphoacceptor) domain XDD1_3503 SM00448 cheY-homologous receiver domain XDD1_3513 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XDD1_3514 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XDD1_3521 SM00382 ATPases associated with a variety of cellular activities XDD1_3527 SM00382 ATPases associated with a variety of cellular activities XDD1_3534 SM01005 Alanine racemase, C-terminal domain XDD1_3542 SM00422 helix_turn_helix, mercury resistance XDD1_3549 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_3555 SM00829 Enoylreductase XDD1_3558 SM00878 Biotin carboxylase C-terminal domain XDD1_3571 SM00823 Phosphopantetheine attachment site XDD1_3573 SM00530 Helix-turn-helix XRE-family like proteins XDD1_3577 SM00382 ATPases associated with a variety of cellular activities XDD1_3578 SM00382 ATPases associated with a variety of cellular activities XDD1_3578 SM00962 SRP54-type protein, GTPase domain XDD1_3578 SM00963 SRP54-type protein, helical bundle domain XDD1_3596 SM00878 Biotin carboxylase C-terminal domain XDD1_3597 SM00796 Allophanate hydrolase subunit 1 XDD1_3597 SM00797 Allophanate hydrolase subunit 2 XDD1_3601 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_3601 SM00895 XDD1_3601 XDD1_3607 SM00798 AICARFT/IMPCHase bienzyme XDD1_3607 SM00851 MGS-like domain XDD1_3608 SM01209 XDD1_3608 XDD1_3608 SM01210 XDD1_3608 XDD1_3610 SM00411 bacterial (prokaryotic) histone like domain XDD1_3620 SM00876 Biotin and Thiamin Synthesis associated domain XDD1_3627 SM00829 Enoylreductase XDD1_3629 SM00421 helix_turn_helix, Lux Regulon XDD1_3636 SM00382 ATPases associated with a variety of cellular activities XDD1_3640 SM00663 RNA polymerase I subunit A N-terminus XDD1_3645 SM00649 Ribosomal protein L11/L12 XDD1_3646 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XDD1_3646 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XDD1_3649 SM00838 Elongation factor G C-terminus XDD1_3649 SM00889 Elongation factor G, domain IV XDD1_3660 SM00382 ATPases associated with a variety of cellular activities XDD1_3667 SM00100 Cyclic nucleotide-monophosphate binding domain XDD1_3667 SM00419 helix_turn_helix, cAMP Regulatory protein XDD1_3672 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XDD1_3672 SM00474 3'-5' exonuclease XDD1_3672 SM00475 5'-3' exonuclease XDD1_3672 SM00482 DNA polymerase A domain XDD1_3686 SM00382 ATPases associated with a variety of cellular activities XDD1_3690 SM01133 XDD1_3690 XDD1_3756 SM00382 ATPases associated with a variety of cellular activities XDD1_3756 SM01086 C-terminal, D2-small domain, of ClpB protein XDD1_3768 SM00912 haemagglutination activity domain XDD1_3776 SM00382 ATPases associated with a variety of cellular activities XDD1_3777 SM00382 ATPases associated with a variety of cellular activities XDD1_3802 SM00532 Ligase N family XDD1_3803 SM00072 Guanylate kinase homologues. XDD1_3804 SM01409 XDD1_3804 XDD1_3805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XDD1_3805 SM00954 Region found in RelA / SpoT proteins XDD1_3806 SM00487 DEAD-like helicases superfamily XDD1_3806 SM00490 helicase superfamily c-terminal domain XDD1_3824 SM00634 Bacterial Ig-like domain (group 1) XDD1_3833 SM01230 XDD1_3833 XDD1_3834 SM00091 PAS domain XDD1_3834 SM00387 Histidine kinase-like ATPases XDD1_3834 SM00388 His Kinase A (phosphoacceptor) domain XDD1_3835 SM00382 ATPases associated with a variety of cellular activities XDD1_3835 SM00448 cheY-homologous receiver domain XDD1_3837 SM00966 SpoVT / AbrB like domain XDD1_3840 SM00729 Elongator protein 3, MiaB family, Radical SAM XDD1_3851 SM00062 Bacterial periplasmic substrate-binding proteins XDD1_3851 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XDD1_3853 SM00382 ATPases associated with a variety of cellular activities XDD1_3862 SM00387 Histidine kinase-like ATPases XDD1_3862 SM00388 His Kinase A (phosphoacceptor) domain XDD1_3863 SM00448 cheY-homologous receiver domain XDD1_3863 SM00862 Transcriptional regulatory protein, C terminal XDD1_3865 SM00316 Ribosomal protein S1-like RNA-binding domain XDD1_3865 SM00732 Likely ribonuclease with RNase H fold. XDD1_3866 SM00899 XDD1_3866 XDD1_3893 SM00450 Rhodanese Homology Domain XDD1_3895 SM00420 helix_turn_helix, Deoxyribose operon repressor XDD1_3895 SM01134 XDD1_3895 XDD1_3941 SM00345 helix_turn_helix gluconate operon transcriptional repressor XDD1_3941 SM00866 XDD1_3941 XDD1_3962 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XDD1_3973 SM01234 XDD1_3973 XDD1_p0007 SM00945 ProQ/FINO family