locus-tag class description XF_0001 PF00308 Bacterial dnaA protein XF_0001 PF08299 Bacterial dnaA protein helix-turn-helix XF_0001 PF11638 DnaA N-terminal domain XF_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain XF_0002 PF02767 DNA polymerase III beta subunit, central domain XF_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain XF_0003 PF02463 RecF/RecN/SMC N terminal domain XF_0005 PF01751 Toprim domain XF_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0005 PF18053 DNA gyrase B subunit insert domain XF_0005 PF00986 DNA gyrase B subunit, carboxyl terminus XF_0005 PF00204 DNA gyrase B XF_0006 PF01435 Peptidase family M48 XF_0009 PF03544 Gram-negative bacterial TonB protein C-terminal XF_0010 PF01618 MotA/TolQ/ExbB proton channel family XF_0011 PF02472 Biopolymer transport protein ExbD/TolR XF_0012 PF02472 Biopolymer transport protein ExbD/TolR XF_0017 PF01218 Coproporphyrinogen III oxidase XF_0026 PF00793 DAHP synthetase I family XF_0028 PF07963 Prokaryotic N-terminal methylation motif XF_0032 PF05567 Neisseria PilC beta-propeller domain XF_0034 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XF_0036 PF00155 Aminotransferase class I and II XF_0039 PF01741 Large-conductance mechanosensitive channel, MscL XF_0043 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ XF_0045 PF00271 Helicase conserved C-terminal domain XF_0045 PF00270 DEAD/DEAH box helicase XF_0045 PF03461 TRCF domain XF_0045 PF02559 CarD-like/TRCF domain XF_0045 PF17757 UvrB interaction domain XF_0047 PF01220 Dehydroquinase class II XF_0048 PF00364 Biotin-requiring enzyme XF_0049 PF00289 Biotin carboxylase, N-terminal domain XF_0049 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XF_0049 PF02785 Biotin carboxylase C-terminal domain XF_0050 PF13361 UvrD-like helicase C-terminal domain XF_0050 PF00580 UvrD/REP helicase N-terminal domain XF_0053 PF00042 Globin XF_0053 PF00970 Oxidoreductase FAD-binding domain XF_0053 PF00175 Oxidoreductase NAD-binding domain XF_0060 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XF_0061 PF08535 KorB domain XF_0061 PF06613 KorB C-terminal beta-barrel domain XF_0061 PF02195 ParB-like nuclease domain XF_0063 PF00156 Phosphoribosyl transferase domain XF_0064 PF06968 Biotin and Thiamin Synthesis associated domain XF_0064 PF04055 Radical SAM superfamily XF_0066 PF01734 Patatin-like phospholipase XF_0068 PF01040 UbiA prenyltransferase family XF_0071 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XF_0071 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XF_0072 PF01578 Cytochrome C assembly protein XF_0073 PF02881 SRP54-type protein, helical bundle domain XF_0073 PF00448 SRP54-type protein, GTPase domain XF_0073 PF02978 Signal peptide binding domain XF_0078 PF00419 Fimbrial protein XF_0080 PF00419 Fimbrial protein XF_0081 PF00577 Outer membrane usher protein XF_0081 PF13954 PapC N-terminal domain XF_0081 PF13953 PapC C-terminal domain XF_0082 PF02753 Pili assembly chaperone PapD, C-terminal domain XF_0082 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XF_0083 PF16970 Type-1 fimbrial protein, A XF_0086 PF02464 Competence-damaged protein XF_0087 PF00083 Sugar (and other) transporter XF_0088 PF01926 50S ribosome-binding GTPase XF_0088 PF13167 GTP-binding GTPase N-terminal XF_0088 PF16360 GTP-binding GTPase Middle Region XF_0089 PF17209 Hfq protein XF_0091 PF00809 Pterin binding enzyme XF_0093 PF17862 AAA+ lid domain XF_0093 PF06480 FtsH Extracellular XF_0093 PF01434 Peptidase family M41 XF_0093 PF00004 ATPase family associated with various cellular activities (AAA) XF_0094 PF01728 FtsJ-like methyltransferase XF_0095 PF01985 CRS1 / YhbY (CRM) domain XF_0099 PF00920 Dehydratase family XF_0104 PF03279 Bacterial lipid A biosynthesis acyltransferase XF_0105 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XF_0107 PF00886 Ribosomal protein S16 XF_0108 PF01782 RimM N-terminal domain XF_0108 PF05239 PRC-barrel domain XF_0109 PF01746 tRNA (Guanine-1)-methyltransferase XF_0110 PF01245 Ribosomal protein L19 XF_0111 PF00557 Metallopeptidase family M24 XF_0114 PF14602 Hexapeptide repeat of succinyl-transferase XF_0114 PF00132 Bacterial transferase hexapeptide (six repeats) XF_0114 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XF_0115 PF03960 ArsC family XF_0116 PF07687 Peptidase dimerisation domain XF_0116 PF01546 Peptidase family M20/M25/M40 XF_0118 PF13537 Glutamine amidotransferase domain XF_0118 PF00733 Asparagine synthase XF_0121 PF03060 Nitronate monooxygenase XF_0122 PF01726 LexA DNA binding domain XF_0122 PF00717 Peptidase S24-like XF_0123 PF00154 recA bacterial DNA recombination protein XF_0124 PF02272 DHHA1 domain XF_0124 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XF_0124 PF01411 tRNA synthetases class II (A) XF_0125 PF02599 Global regulator protein family XF_0127 PF01432 Peptidase family M3 XF_0132 PF00394 Multicopper oxidase XF_0132 PF07731 Multicopper oxidase XF_0132 PF07732 Multicopper oxidase XF_0133 PF05275 Copper resistance protein B precursor (CopB) XF_0134 PF10458 Valyl tRNA synthetase tRNA binding arm XF_0134 PF00133 tRNA synthetases class I (I, L, M and V) XF_0134 PF08264 Anticodon-binding domain of tRNA XF_0138 PF00883 Cytosol aminopeptidase family, catalytic domain XF_0138 PF02789 Cytosol aminopeptidase family, N-terminal domain XF_0141 PF01380 SIS domain XF_0143 PF17284 Spermidine synthase tetramerisation domain XF_0144 PF17810 Arginine decarboxylase helical bundle domain XF_0144 PF17944 Arginine decarboxylase C-terminal helical extension XF_0144 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XF_0145 PF00106 short chain dehydrogenase XF_0147 PF05746 DALR anticodon binding domain XF_0147 PF00750 tRNA synthetases class I (R) XF_0147 PF03485 Arginyl tRNA synthetase N terminal domain XF_0148 PF04002 RadC-like JAB domain XF_0149 PF04127 DNA / pantothenate metabolism flavoprotein XF_0149 PF02441 Flavoprotein XF_0150 PF00692 dUTPase XF_0151 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XF_0151 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XF_0151 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XF_0151 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XF_0153 PF00156 Phosphoribosyl transferase domain XF_0165 PF07690 Major Facilitator Superfamily XF_0166 PF03702 Anhydro-N-acetylmuramic acid kinase XF_0167 PF04225 Opacity-associated protein A LysM-like domain XF_0167 PF01551 Peptidase family M23 XF_0169 PF00579 tRNA synthetases class I (W and Y) XF_0170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XF_0170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XF_0171 PF01578 Cytochrome C assembly protein XF_0174 PF16658 Class II release factor RF3, C-terminal domain XF_0174 PF00009 Elongation factor Tu GTP binding domain XF_0175 PF03006 Haemolysin-III related XF_0176 PF00535 Glycosyl transferase family 2 XF_0177 PF01026 TatD related DNase XF_0181 PF01597 Glycine cleavage H-protein XF_0183 PF08669 Glycine cleavage T-protein C-terminal barrel domain XF_0183 PF01571 Aminomethyltransferase folate-binding domain XF_0185 PF01145 SPFH domain / Band 7 family XF_0185 PF16200 C-terminal region of band_7 XF_0186 PF03819 MazG nucleotide pyrophosphohydrolase domain XF_0187 PF00459 Inositol monophosphatase family XF_0188 PF00293 NUDIX domain XF_0189 PF00202 Aminotransferase class-III XF_0190 PF04452 RNA methyltransferase XF_0192 PF00270 DEAD/DEAH box helicase XF_0192 PF00271 Helicase conserved C-terminal domain XF_0193 PF01242 6-pyruvoyl tetrahydropterin synthase XF_0203 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XF_0204 PF07733 Bacterial DNA polymerase III alpha NTPase domain XF_0204 PF02811 PHP domain XF_0204 PF14579 Helix-hairpin-helix motif XF_0204 PF17657 Bacterial DNA polymerase III alpha subunit finger domain XF_0204 PF01336 OB-fold nucleic acid binding domain XF_0205 PF01259 SAICAR synthetase XF_0207 PF01556 DnaJ C terminal domain XF_0207 PF00684 DnaJ central domain XF_0207 PF00226 DnaJ domain XF_0208 PF00834 Ribulose-phosphate 3 epimerase family XF_0210 PF00425 chorismate binding enzyme XF_0210 PF04715 Anthranilate synthase component I, N terminal region XF_0211 PF00117 Glutamine amidotransferase class-I XF_0212 PF02885 Glycosyl transferase family, helical bundle domain XF_0212 PF00591 Glycosyl transferase family, a/b domain XF_0213 PF00218 Indole-3-glycerol phosphate synthase XF_0220 PF01321 Creatinase/Prolidase N-terminal domain XF_0220 PF00557 Metallopeptidase family M24 XF_0223 PF01702 Queuine tRNA-ribosyltransferase XF_0224 PF02699 Preprotein translocase subunit XF_0225 PF02355 Protein export membrane protein XF_0225 PF13721 SecD export protein N-terminal TM region XF_0225 PF07549 SecD/SecF GG Motif XF_0226 PF02355 Protein export membrane protein XF_0226 PF07549 SecD/SecF GG Motif XF_0227 PF12627 Probable RNA and SrmB- binding site of polymerase A XF_0227 PF12626 Polymerase A arginine-rich C-terminus XF_0227 PF01743 Poly A polymerase head domain XF_0228 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XF_0229 PF02548 Ketopantoate hydroxymethyltransferase XF_0230 PF02569 Pantoate-beta-alanine ligase XF_0231 PF02261 Aspartate decarboxylase XF_0232 PF00342 Phosphoglucose isomerase XF_0233 PF17384 RimP C-terminal SH3 domain XF_0233 PF02576 RimP N-terminal domain XF_0234 PF00575 S1 RNA binding domain XF_0234 PF08529 NusA N-terminal domain XF_0234 PF13184 NusA-like KH domain XF_0235 PF11987 Translation-initiation factor 2 XF_0235 PF00009 Elongation factor Tu GTP binding domain XF_0235 PF08364 Bacterial translation initiation factor IF-2 associated region XF_0235 PF04760 Translation initiation factor IF-2, N-terminal region XF_0236 PF02033 Ribosome-binding factor A XF_0237 PF16198 tRNA pseudouridylate synthase B C-terminal domain XF_0237 PF09157 Pseudouridine synthase II TruB, C-terminal XF_0237 PF01509 TruB family pseudouridylate synthase (N terminal domain) XF_0238 PF00312 Ribosomal protein S15 XF_0239 PF00013 KH domain XF_0239 PF01138 3' exoribonuclease family, domain 1 XF_0239 PF03725 3' exoribonuclease family, domain 2 XF_0239 PF00575 S1 RNA binding domain XF_0239 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XF_0240 PF01638 HxlR-like helix-turn-helix XF_0241 PF05368 NmrA-like family XF_0243 PF00873 AcrB/AcrD/AcrF family XF_0252 PF00271 Helicase conserved C-terminal domain XF_0252 PF00270 DEAD/DEAH box helicase XF_0252 PF03880 DbpA RNA binding domain XF_0253 PF00766 Electron transfer flavoprotein FAD-binding domain XF_0253 PF01012 Electron transfer flavoprotein domain XF_0254 PF01012 Electron transfer flavoprotein domain XF_0255 PF16363 GDP-mannose 4,6 dehydratase XF_0256 PF00483 Nucleotidyl transferase XF_0257 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase XF_0258 PF04321 RmlD substrate binding domain XF_0259 PF00483 Nucleotidyl transferase XF_0259 PF01050 Mannose-6-phosphate isomerase XF_0260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XF_0260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XF_0260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XF_0260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XF_0267 PF03797 Autotransporter beta-domain XF_0267 PF12951 Passenger-associated-transport-repeat XF_0267 PF00082 Subtilase family XF_0268 PF06779 Uncharacterised MFS-type transporter YbfB XF_0274 PF00365 Phosphofructokinase XF_0276 PF08245 Mur ligase middle domain XF_0276 PF02875 Mur ligase family, glutamate ligase domain XF_0276 PF01225 Mur ligase family, catalytic domain XF_0277 PF01569 PAP2 superfamily XF_0280 PF00883 Cytosol aminopeptidase family, catalytic domain XF_0280 PF02789 Cytosol aminopeptidase family, N-terminal domain XF_0281 PF01594 AI-2E family transporter XF_0285 PF00595 PDZ domain XF_0286 PF01370 NAD dependent epimerase/dehydratase family XF_0286 PF08338 Domain of unknown function (DUF1731) XF_0287 PF13193 AMP-binding enzyme C-terminal domain XF_0287 PF00501 AMP-binding enzyme XF_0290 PF00694 Aconitase C-terminal domain XF_0290 PF00330 Aconitase family (aconitate hydratase) XF_0292 PF11791 Aconitate B N-terminal domain XF_0292 PF00330 Aconitase family (aconitate hydratase) XF_0292 PF06434 Aconitate hydratase 2 N-terminus XF_0300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XF_0303 PF00121 Triosephosphate isomerase XF_0305 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XF_0306 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XF_0307 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XF_0308 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XF_0310 PF10531 SLBB domain XF_0310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XF_0310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XF_0311 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal XF_0311 PF00384 Molybdopterin oxidoreductase XF_0311 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XF_0312 PF00146 NADH dehydrogenase XF_0313 PF12838 4Fe-4S dicluster domain XF_0314 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XF_0315 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XF_0316 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XF_0316 PF00361 Proton-conducting membrane transporter XF_0317 PF00361 Proton-conducting membrane transporter XF_0317 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus XF_0318 PF00361 Proton-conducting membrane transporter XF_0319 PF00106 short chain dehydrogenase XF_0320 PF03600 Citrate transporter XF_0322 PF00072 Response regulator receiver domain XF_0322 PF00486 Transcriptional regulatory protein, C terminal XF_0323 PF08521 Two-component sensor kinase N-terminal XF_0323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0323 PF00512 His Kinase A (phospho-acceptor) domain XF_0326 PF12323 Helix-turn-helix domain XF_0326 PF01385 Probable transposase XF_0326 PF07282 Putative transposase DNA-binding domain XF_0338 PF02590 Predicted SPOUT methyltransferase XF_0339 PF07715 TonB-dependent Receptor Plug Domain XF_0339 PF00593 TonB dependent receptor XF_0340 PF02600 Disulfide bond formation protein DsbB XF_0343 PF00691 OmpA family XF_0343 PF05736 OprF membrane domain XF_0347 PF02913 FAD linked oxidases, C-terminal domain XF_0347 PF01565 FAD binding domain XF_0352 PF13291 ACT domain XF_0352 PF04607 Region found in RelA / SpoT proteins XF_0352 PF02824 TGS domain XF_0353 PF01042 Endoribonuclease L-PSP XF_0354 PF00271 Helicase conserved C-terminal domain XF_0354 PF00270 DEAD/DEAH box helicase XF_0354 PF17191 RecG wedge domain XF_0356 PF00067 Cytochrome P450 XF_0361 PF00772 DnaB-like helicase N terminal domain XF_0361 PF03796 DnaB-like helicase C terminal domain XF_0363 PF05736 OprF membrane domain XF_0363 PF00691 OmpA family XF_0366 PF00294 pfkB family carbohydrate kinase XF_0367 PF00248 Aldo/keto reductase family XF_0368 PF00905 Penicillin binding protein transpeptidase domain XF_0368 PF17092 Penicillin-binding protein OB-like domain XF_0368 PF00912 Transglycosylase XF_0373 PF07660 Secretin and TonB N terminus short domain XF_0373 PF03958 Bacterial type II/III secretion system short domain XF_0373 PF11741 AMIN domain XF_0373 PF00263 Bacterial type II and III secretion system protein XF_0375 PF08019 Phosphoethanolamine transferase EptA/EptB XF_0375 PF00884 Sulfatase XF_0377 PF00067 Cytochrome P450 XF_0378 PF02581 Thiamine monophosphate synthase XF_0379 PF00301 Rubredoxin XF_0381 PF10431 C-terminal, D2-small domain, of ClpB protein XF_0381 PF02861 Clp amino terminal domain, pathogenicity island component XF_0381 PF17871 AAA lid domain XF_0381 PF07724 AAA domain (Cdc48 subfamily) XF_0381 PF00004 ATPase family associated with various cellular activities (AAA) XF_0384 PF07715 TonB-dependent Receptor Plug Domain XF_0384 PF00593 TonB dependent receptor XF_0387 PF01207 Dihydrouridine synthase (Dus) XF_0389 PF00486 Transcriptional regulatory protein, C terminal XF_0389 PF00072 Response regulator receiver domain XF_0390 PF08918 PhoQ Sensor XF_0390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0392 PF00438 S-adenosylmethionine synthetase, N-terminal domain XF_0392 PF02772 S-adenosylmethionine synthetase, central domain XF_0392 PF02773 S-adenosylmethionine synthetase, C-terminal domain XF_0393 PF00293 NUDIX domain XF_0395 PF00210 Ferritin-like domain XF_0401 PF00486 Transcriptional regulatory protein, C terminal XF_0401 PF00072 Response regulator receiver domain XF_0405 PF01521 Iron-sulphur cluster biosynthesis XF_0406 PF03741 Integral membrane protein TerC family XF_0407 PF17785 PUA-like domain XF_0407 PF10672 S-adenosylmethionine-dependent methyltransferase XF_0408 PF13520 Amino acid permease XF_0412 PF00005 ABC transporter XF_0413 PF02646 RmuC family XF_0416 PF04333 MlaA lipoprotein XF_0418 PF05494 MlaC protein XF_0419 PF02470 MlaD protein XF_0420 PF02405 Permease MlaE XF_0421 PF00005 ABC transporter XF_0422 PF17946 RecC C-terminal domain XF_0423 PF13361 UvrD-like helicase C-terminal domain XF_0423 PF12705 PD-(D/E)XK nuclease superfamily XF_0423 PF00580 UvrD/REP helicase N-terminal domain XF_0425 PF13538 UvrD-like helicase C-terminal domain XF_0428 PF00579 tRNA synthetases class I (W and Y) XF_0430 PF08275 DNA primase catalytic core, N-terminal domain XF_0430 PF08278 DNA primase DnaG DnaB-binding XF_0430 PF10410 DnaB-helicase binding domain of primase XF_0430 PF01807 CHC2 zinc finger XF_0432 PF03631 Virulence factor BrkB XF_0433 PF09424 Yqey-like protein XF_0434 PF01165 Ribosomal protein S21 XF_0435 PF00814 Glycoprotease family XF_0436 PF02152 Dihydroneopterin aldolase XF_0437 PF00924 Mechanosensitive ion channel XF_0439 PF00933 Glycosyl hydrolase family 3 N terminal domain XF_0439 PF01915 Glycosyl hydrolase family 3 C-terminal domain XF_0439 PF14310 Fibronectin type III-like domain XF_0442 PF01066 CDP-alcohol phosphatidyltransferase XF_0445 PF04073 Aminoacyl-tRNA editing domain XF_0445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XF_0445 PF03129 Anticodon binding domain XF_0450 PF00072 Response regulator receiver domain XF_0451 PF00107 Zinc-binding dehydrogenase XF_0451 PF08240 Alcohol dehydrogenase GroES-like domain XF_0452 PF12221 Bacterial membrane protein N terminal XF_0452 PF01145 SPFH domain / Band 7 family XF_0453 PF01145 SPFH domain / Band 7 family XF_0455 PF00709 Adenylosuccinate synthetase XF_0457 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XF_0457 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XF_0458 PF00334 Nucleoside diphosphate kinase XF_0459 PF04055 Radical SAM superfamily XF_0464 PF13360 PQQ-like domain XF_0464 PF01011 PQQ enzyme repeat XF_0465 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XF_0465 PF01926 50S ribosome-binding GTPase XF_0466 PF00899 ThiF family XF_0470 PF00563 EAL domain XF_0470 PF12792 CSS motif domain associated with EAL XF_0472 PF03641 Possible lysine decarboxylase XF_0472 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases XF_0472 PF11892 Domain of unknown function (DUF3412) XF_0473 PF07963 Prokaryotic N-terminal methylation motif XF_0473 PF14245 Type IV pilin PilA XF_0478 PF05567 Neisseria PilC beta-propeller domain XF_0482 PF00436 Single-strand binding protein family XF_0487 PF07963 Prokaryotic N-terminal methylation motif XF_0496 PF06114 IrrE N-terminal-like domain XF_0501 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT XF_0505 PF10410 DnaB-helicase binding domain of primase XF_0505 PF08275 DNA primase catalytic core, N-terminal domain XF_0505 PF01807 CHC2 zinc finger XF_0505 PF08278 DNA primase DnaG DnaB-binding XF_0511 PF00574 Clp protease XF_0513 PF00959 Phage lysozyme XF_0523 PF09356 Phage conserved hypothetical protein BR0599 XF_0523 PF09931 Uncharacterized conserved protein (DUF2163) XF_0536 PF07282 Putative transposase DNA-binding domain XF_0536 PF01385 Probable transposase XF_0536 PF12323 Helix-turn-helix domain XF_0539 PF07963 Prokaryotic N-terminal methylation motif XF_0539 PF08334 Type II secretion system (T2SS), protein G XF_0547 PF04060 Putative Fe-S cluster XF_0549 PF09334 tRNA synthetases class I (M) XF_0549 PF01588 Putative tRNA binding domain XF_0550 PF07715 TonB-dependent Receptor Plug Domain XF_0550 PF00593 TonB dependent receptor XF_0552 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XF_0553 PF04348 LppC putative lipoprotein XF_0554 PF02021 Uncharacterised protein family UPF0102 XF_0556 PF03193 RsgA GTPase XF_0557 PF00127 Copper binding proteins, plastocyanin/azurin family XF_0560 PF00117 Glutamine amidotransferase class-I XF_0560 PF00958 GMP synthase C terminal domain XF_0562 PF00902 Sec-independent protein translocase protein (TatC) XF_0563 PF02416 mttA/Hcf106 family XF_0564 PF02416 mttA/Hcf106 family XF_0566 PF00762 Ferrochelatase XF_0568 PF04381 Putative exonuclease, RdgC XF_0569 PF01171 PP-loop family XF_0572 PF07977 FabA-like domain XF_0576 PF05649 Peptidase family M13 XF_0576 PF01431 Peptidase family M13 XF_0580 PF02223 Thymidylate kinase XF_0585 PF00551 Formyl transferase XF_0587 PF00586 AIR synthase related protein, N-terminal domain XF_0587 PF02769 AIR synthase related protein, C-terminal domain XF_0589 PF01594 AI-2E family transporter XF_0590 PF00308 Bacterial dnaA protein XF_0591 PF00483 Nucleotidyl transferase XF_0592 PF01636 Phosphotransferase enzyme family XF_0594 PF02424 ApbE family XF_0598 PF13640 2OG-Fe(II) oxygenase superfamily XF_0598 PF18331 PKHD-type hydroxylase C-terminal domain XF_0599 PF00593 TonB dependent receptor XF_0599 PF07715 TonB-dependent Receptor Plug Domain XF_0603 PF00291 Pyridoxal-phosphate dependent enzyme XF_0609 PF16363 GDP-mannose 4,6 dehydratase XF_0610 PF16363 GDP-mannose 4,6 dehydratase XF_0611 PF01370 NAD dependent epimerase/dehydratase family XF_0615 PF00118 TCP-1/cpn60 chaperonin family XF_0616 PF00166 Chaperonin 10 Kd subunit XF_0619 PF03091 CutA1 divalent ion tolerance protein XF_0620 PF02683 Cytochrome C biogenesis protein transmembrane region XF_0620 PF11412 Disulphide bond corrector protein DsbC XF_0621 PF02581 Thiamine monophosphate synthase XF_0621 PF08543 Phosphomethylpyrimidine kinase XF_0624 PF08501 Shikimate dehydrogenase substrate binding domain XF_0624 PF01488 Shikimate / quinate 5-dehydrogenase XF_0624 PF18317 Shikimate 5'-dehydrogenase C-terminal domain XF_0641 PF01555 DNA methylase XF_0644 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XF_0644 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XF_0647 PF00730 HhH-GPD superfamily base excision DNA repair protein XF_0647 PF00633 Helix-hairpin-helix motif XF_0647 PF10576 Iron-sulfur binding domain of endonuclease III XF_0651 PF04235 Protein of unknown function (DUF418) XF_0652 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XF_0653 PF00877 NlpC/P60 family XF_0654 PF00877 NlpC/P60 family XF_0656 PF00375 Sodium:dicarboxylate symporter family XF_0657 PF00245 Alkaline phosphatase XF_0659 PF01171 PP-loop family XF_0659 PF09179 TilS substrate binding domain XF_0659 PF11734 TilS substrate C-terminal domain XF_0660 PF02609 Exonuclease VII small subunit XF_0661 PF00348 Polyprenyl synthetase XF_0668 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) XF_0668 PF06594 Haemolysin-type calcium binding protein related domain XF_0669 PF00456 Transketolase, thiamine diphosphate binding domain XF_0669 PF17831 Pyruvate dehydrogenase E1 component middle domain XF_0670 PF00698 Acyl transferase domain XF_0672 PF00550 Phosphopantetheine attachment site XF_0673 PF02801 Beta-ketoacyl synthase, C-terminal domain XF_0673 PF00109 Beta-ketoacyl synthase, N-terminal domain XF_0674 PF04715 Anthranilate synthase component I, N terminal region XF_0674 PF00425 chorismate binding enzyme XF_0675 PF02618 YceG-like family XF_0676 PF09115 DNA polymerase III, delta subunit, C terminal XF_0707 PF00959 Phage lysozyme XF_0720 PF01381 Helix-turn-helix XF_0727 PF17482 Phage tail sheath C-terminal domain XF_0727 PF04984 Phage tail sheath protein subtilisin-like domain XF_0736 PF03129 Anticodon binding domain XF_0736 PF02824 TGS domain XF_0736 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XF_0736 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XF_0737 PF05198 Translation initiation factor IF-3, N-terminal domain XF_0737 PF00707 Translation initiation factor IF-3, C-terminal domain XF_0739 PF01632 Ribosomal protein L35 XF_0740 PF00453 Ribosomal protein L20 XF_0741 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XF_0741 PF01409 tRNA synthetases class II core domain (F) XF_0742 PF01588 Putative tRNA binding domain XF_0742 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain XF_0742 PF03483 B3/4 domain XF_0742 PF03484 tRNA synthetase B5 domain XF_0742 PF03147 Ferredoxin-fold anticodon binding domain XF_0743 PF00216 Bacterial DNA-binding protein XF_0748 PF18125 RlmM ferredoxin-like domain XF_0748 PF01728 FtsJ-like methyltransferase XF_0751 PF00570 HRDC domain XF_0751 PF01612 3'-5' exonuclease XF_0755 PF02601 Exonuclease VII, large subunit XF_0755 PF13742 OB-fold nucleic acid binding domain XF_0757 PF01256 Carbohydrate kinase XF_0757 PF03853 YjeF-related protein N-terminus XF_0758 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE XF_0759 PF11741 AMIN domain XF_0759 PF01520 N-acetylmuramoyl-L-alanine amidase XF_0760 PF01119 DNA mismatch repair protein, C-terminal domain XF_0760 PF08676 MutL C terminal dimerisation domain XF_0762 PF00692 dUTPase XF_0764 PF01925 Sulfite exporter TauE/SafE XF_0766 PF04143 Sulphur transport XF_0768 PF00753 Metallo-beta-lactamase superfamily XF_0768 PF04273 Putative phosphatase (DUF442) XF_0774 PF07977 FabA-like domain XF_0778 PF01757 Acyltransferase family XF_0782 PF05690 Thiazole biosynthesis protein ThiG XF_0782 PF02597 ThiS family XF_0783 PF05690 Thiazole biosynthesis protein ThiG XF_0784 PF02390 Putative methyltransferase XF_0785 PF02080 TrkA-C domain XF_0785 PF03600 Citrate transporter XF_0789 PF02381 MraZ protein, putative antitoxin-like XF_0790 PF01795 MraW methylase family XF_0791 PF04999 Cell division protein FtsL XF_0792 PF00905 Penicillin binding protein transpeptidase domain XF_0792 PF03717 Penicillin-binding Protein dimerisation domain XF_0793 PF02875 Mur ligase family, glutamate ligase domain XF_0793 PF08245 Mur ligase middle domain XF_0793 PF01225 Mur ligase family, catalytic domain XF_0794 PF02875 Mur ligase family, glutamate ligase domain XF_0794 PF01225 Mur ligase family, catalytic domain XF_0794 PF08245 Mur ligase middle domain XF_0795 PF00953 Glycosyl transferase family 4 XF_0796 PF01098 Cell cycle protein XF_0797 PF04101 Glycosyltransferase family 28 C-terminal domain XF_0797 PF03033 Glycosyltransferase family 28 N-terminal domain XF_0798 PF02875 Mur ligase family, glutamate ligase domain XF_0798 PF08245 Mur ligase middle domain XF_0798 PF01225 Mur ligase family, catalytic domain XF_0799 PF07478 D-ala D-ala ligase C-terminus XF_0800 PF08478 POTRA domain, FtsQ-type XF_0800 PF03799 Cell division protein FtsQ XF_0801 PF02491 SHS2 domain inserted in FTSA XF_0802 PF00091 Tubulin/FtsZ family, GTPase domain XF_0802 PF12327 FtsZ family, C-terminal domain XF_0803 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XF_0805 PF01476 LysM domain XF_0805 PF08525 Opacity-associated protein A N-terminal motif XF_0805 PF01551 Peptidase family M23 XF_0806 PF07516 SecA Wing and Scaffold domain XF_0806 PF02810 SEC-C motif XF_0806 PF07517 SecA DEAD-like domain XF_0806 PF01043 SecA preprotein cross-linking domain XF_0810 PF03330 Lytic transglycolase XF_0816 PF05193 Peptidase M16 inactive domain XF_0816 PF00675 Insulinase (Peptidase family M16) XF_0818 PF00553 Cellulose binding domain XF_0818 PF00150 Cellulase (glycosyl hydrolase family 5) XF_0821 PF01475 Ferric uptake regulator family XF_0822 PF00749 tRNA synthetases class I (E and Q), catalytic domain XF_0823 PF00162 Phosphoglycerate kinase XF_0824 PF02887 Pyruvate kinase, alpha/beta domain XF_0824 PF00224 Pyruvate kinase, barrel domain XF_0826 PF00274 Fructose-bisphosphate aldolase class-I XF_0831 PF00291 Pyridoxal-phosphate dependent enzyme XF_0832 PF10414 Sirohaem synthase dimerisation region XF_0832 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XF_0832 PF14824 Sirohaem biosynthesis protein central XF_0833 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_0833 PF03466 LysR substrate binding domain XF_0834 PF01494 FAD binding domain XF_0835 PF01494 FAD binding domain XF_0837 PF04453 LPS transport system D XF_0838 PF00639 PPIC-type PPIASE domain XF_0838 PF09312 SurA N-terminal domain XF_0839 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XF_0840 PF01301 Glycosyl hydrolases family 35 XF_0842 PF07971 Glycosyl hydrolase family 92 XF_0842 PF17678 Glycosyl hydrolase family 92 N-terminal domain XF_0845 PF14310 Fibronectin type III-like domain XF_0845 PF01915 Glycosyl hydrolase family 3 C-terminal domain XF_0845 PF00933 Glycosyl hydrolase family 3 N terminal domain XF_0845 PF07691 PA14 domain XF_0847 PF02838 Glycosyl hydrolase family 20, domain 2 XF_0847 PF07691 PA14 domain XF_0847 PF00728 Glycosyl hydrolase family 20, catalytic domain XF_0848 PF01476 LysM domain XF_0848 PF00704 Glycosyl hydrolases family 18 XF_0849 PF01641 SelR domain XF_0851 PF01266 FAD dependent oxidoreductase XF_0852 PF01168 Alanine racemase, N-terminal domain XF_0852 PF00842 Alanine racemase, C-terminal domain XF_0853 PF00512 His Kinase A (phospho-acceptor) domain XF_0853 PF00989 PAS fold XF_0853 PF16736 Single Cache-like XF_0853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0855 PF01551 Peptidase family M23 XF_0855 PF01476 LysM domain XF_0856 PF09335 SNARE associated Golgi protein XF_0858 PF01975 Survival protein SurE XF_0862 PF01551 Peptidase family M23 XF_0863 PF00561 alpha/beta hydrolase fold XF_0864 PF01053 Cys/Met metabolism PLP-dependent enzyme XF_0866 PF01545 Cation efflux family XF_0868 PF07992 Pyridine nucleotide-disulphide oxidoreductase XF_0868 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XF_0869 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XF_0869 PF00364 Biotin-requiring enzyme XF_0869 PF02817 e3 binding domain XF_0873 PF03180 NLPA lipoprotein XF_0874 PF00528 Binding-protein-dependent transport system inner membrane component XF_0875 PF00005 ABC transporter XF_0875 PF09383 NIL domain XF_0878 PF01522 Polysaccharide deacetylase XF_0880 PF00484 Carbonic anhydrase XF_0882 PF04851 Type III restriction enzyme, res subunit XF_0882 PF13307 Helicase C-terminal domain XF_0884 PF14814 Bifunctional transglycosylase second domain XF_0884 PF00905 Penicillin binding protein transpeptidase domain XF_0884 PF00912 Transglycosylase XF_0889 PF13018 Extended Signal Peptide of Type V secretion system XF_0889 PF05860 haemagglutination activity domain XF_0889 PF04829 Pre-toxin domain with VENN motif XF_0889 PF13332 Hemagglutinin repeat XF_0901 PF00571 CBS domain XF_0901 PF03471 Transporter associated domain XF_0903 PF02130 Uncharacterized protein family UPF0054 XF_0904 PF02562 PhoH-like protein XF_0906 PF04055 Radical SAM superfamily XF_0906 PF01938 TRAM domain XF_0906 PF00919 Uncharacterized protein family UPF0004 XF_0907 PF01464 Transglycosylase SLT domain XF_0908 PF00355 Rieske [2Fe-2S] domain XF_0908 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal XF_0909 PF00033 Cytochrome b/b6/petB XF_0909 PF00032 Cytochrome b(C-terminal)/b6/petD XF_0910 PF02167 Cytochrome C1 family XF_0911 PF02798 Glutathione S-transferase, N-terminal domain XF_0911 PF00043 Glutathione S-transferase, C-terminal domain XF_0912 PF04386 Stringent starvation protein B XF_0919 PF01300 Telomere recombination XF_0920 PF01751 Toprim domain XF_0920 PF01131 DNA topoisomerase XF_0920 PF13368 Topoisomerase C-terminal repeat XF_0923 PF04361 Protein of unknown function (DUF494) XF_0924 PF17782 DprA winged helix domain XF_0924 PF02481 DNA recombination-mediator protein A XF_0926 PF01327 Polypeptide deformylase XF_0927 PF02911 Formyl transferase, C-terminal domain XF_0927 PF00551 Formyl transferase XF_0928 PF01029 NusB family XF_0928 PF01189 16S rRNA methyltransferase RsmB/F XF_0929 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase XF_0933 PF02421 Ferrous iron transport protein B XF_0933 PF17910 FeoB cytosolic helical domain XF_0933 PF07670 Nucleoside recognition XF_0933 PF07664 Ferrous iron transport protein B C terminus XF_0933 PF04023 FeoA domain XF_0938 PF13525 Outer membrane lipoprotein XF_0939 PF01479 S4 domain XF_0939 PF00849 RNA pseudouridylate synthase XF_0941 PF04134 Protein of unknown function, DUF393 XF_0942 PF06039 Malate:quinone oxidoreductase (Mqo) XF_0944 PF00005 ABC transporter XF_0944 PF12848 ABC transporter XF_0946 PF00464 Serine hydroxymethyltransferase XF_0948 PF03477 ATP cone domain XF_0950 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XF_0950 PF01872 RibD C-terminal domain XF_0952 PF00677 Lumazine binding domain XF_0953 PF00925 GTP cyclohydrolase II XF_0953 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XF_0954 PF00885 6,7-dimethyl-8-ribityllumazine synthase XF_0955 PF01029 NusB family XF_0956 PF00586 AIR synthase related protein, N-terminal domain XF_0956 PF02769 AIR synthase related protein, C-terminal domain XF_0959 PF02562 PhoH-like protein XF_0959 PF13638 PIN domain XF_0960 PF13638 PIN domain XF_0960 PF02562 PhoH-like protein XF_0961 PF00578 AhpC/TSA family XF_0963 PF00701 Dihydrodipicolinate synthetase family XF_0967 PF12344 Ultra-violet resistance protein B XF_0967 PF17757 UvrB interaction domain XF_0967 PF02151 UvrB/uvrC motif XF_0967 PF04851 Type III restriction enzyme, res subunit XF_0967 PF00271 Helicase conserved C-terminal domain XF_0972 PF00196 Bacterial regulatory proteins, luxR family XF_0972 PF00072 Response regulator receiver domain XF_0973 PF09456 RcsC Alpha-Beta-Loop (ABL) XF_0973 PF00512 His Kinase A (phospho-acceptor) domain XF_0973 PF00072 Response regulator receiver domain XF_0973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0976 PF00375 Sodium:dicarboxylate symporter family XF_0977 PF01515 Phosphate acetyl/butaryl transferase XF_0977 PF00390 Malic enzyme, N-terminal domain XF_0977 PF03949 Malic enzyme, NAD binding domain XF_0978 PF00183 Hsp90 protein XF_0978 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_0980 PF01467 Cytidylyltransferase-like XF_0983 PF00037 4Fe-4S binding domain XF_0986 PF05230 MASE2 domain XF_0986 PF00990 Diguanylate cyclase, GGDEF domain XF_0987 PF01551 Peptidase family M23 XF_0987 PF08460 Bacterial SH3 domain XF_0988 PF01979 Amidohydrolase family XF_0989 PF01809 Putative membrane protein insertion efficiency factor XF_0991 PF01258 Prokaryotic dksA/traR C4-type zinc finger XF_0993 PF05977 Transmembrane secretion effector XF_0994 PF02657 Fe-S metabolism associated domain XF_0995 PF09190 DALR domain XF_0995 PF01406 tRNA synthetases class I (C) catalytic domain XF_0998 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XF_0998 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XF_0999 PF00764 Arginosuccinate synthase XF_1000 PF07687 Peptidase dimerisation domain XF_1000 PF01546 Peptidase family M20/M25/M40 XF_1001 PF00696 Amino acid kinase family XF_1001 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase XF_1002 PF01118 Semialdehyde dehydrogenase, NAD binding domain XF_1003 PF00206 Lyase XF_1004 PF00696 Amino acid kinase family XF_1004 PF01472 PUA domain XF_1005 PF00171 Aldehyde dehydrogenase family XF_1011 PF06594 Haemolysin-type calcium binding protein related domain XF_1011 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) XF_1012 PF14437 MafB19-like deaminase XF_1013 PF02742 Iron dependent repressor, metal binding and dimerisation domain XF_1013 PF01325 Iron dependent repressor, N-terminal DNA binding domain XF_1015 PF01566 Natural resistance-associated macrophage protein XF_1018 PF04376 Arginine-tRNA-protein transferase, N terminus XF_1018 PF04377 Arginine-tRNA-protein transferase, C terminus XF_1026 PF03797 Autotransporter beta-domain XF_1026 PF12951 Passenger-associated-transport-repeat XF_1026 PF00082 Subtilase family XF_1031 PF01553 Acyltransferase XF_1037 PF05221 S-adenosyl-L-homocysteine hydrolase XF_1037 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XF_1041 PF01351 Ribonuclease HII XF_1042 PF02684 Lipid-A-disaccharide synthetase XF_1043 PF00132 Bacterial transferase hexapeptide (six repeats) XF_1043 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XF_1044 PF07977 FabA-like domain XF_1045 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XF_1045 PF00132 Bacterial transferase hexapeptide (six repeats) XF_1046 PF01103 Surface antigen XF_1046 PF07244 Surface antigen variable number repeat XF_1047 PF17820 PDZ domain XF_1047 PF02163 Peptidase family M50 XF_1048 PF13288 DXP reductoisomerase C-terminal domain XF_1048 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XF_1048 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain XF_1050 PF01255 Putative undecaprenyl diphosphate synthase XF_1051 PF01765 Ribosome recycling factor XF_1053 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XF_1058 PF00696 Amino acid kinase family XF_1061 PF01081 KDPG and KHG aldolase XF_1062 PF00920 Dehydratase family XF_1063 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XF_1064 PF02685 Glucokinase XF_1065 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XF_1065 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XF_1067 PF17912 MalK OB fold domain XF_1067 PF00005 ABC transporter XF_1068 PF01571 Aminomethyltransferase folate-binding domain XF_1070 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XF_1071 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XF_1072 PF02910 Fumarate reductase flavoprotein C-term XF_1072 PF00890 FAD binding domain XF_1073 PF13085 2Fe-2S iron-sulfur cluster binding domain XF_1074 PF03937 Flavinator of succinate dehydrogenase XF_1076 PF12704 MacB-like periplasmic core domain XF_1076 PF02687 FtsX-like permease family XF_1077 PF00005 ABC transporter XF_1078 PF00753 Metallo-beta-lactamase superfamily XF_1078 PF03772 Competence protein XF_1079 PF01618 MotA/TolQ/ExbB proton channel family XF_1081 PF00664 ABC transporter transmembrane region XF_1081 PF00005 ABC transporter XF_1082 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XF_1086 PF04264 YceI-like domain XF_1087 PF13091 PLD-like domain XF_1094 PF03358 NADPH-dependent FMN reductase XF_1097 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain XF_1097 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XF_1103 PF00476 DNA polymerase family A XF_1103 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XF_1103 PF01367 5'-3' exonuclease, C-terminal SAM fold XF_1103 PF01612 3'-5' exonuclease XF_1105 PF05173 Dihydrodipicolinate reductase, C-terminus XF_1105 PF01113 Dihydrodipicolinate reductase, N-terminus XF_1106 PF00117 Glutamine amidotransferase class-I XF_1106 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XF_1107 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XF_1107 PF02142 MGS-like domain XF_1107 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XF_1108 PF03449 Transcription elongation factor, N-terminal XF_1108 PF01272 Transcription elongation factor, GreA/GreB, C-term XF_1110 PF02272 DHHA1 domain XF_1110 PF01368 DHH family XF_1110 PF17768 RecJ OB domain XF_1111 PF03462 PCRF domain XF_1111 PF00472 RF-1 domain XF_1112 PF00152 tRNA synthetases class II (D, K and N) XF_1112 PF01336 OB-fold nucleic acid binding domain XF_1113 PF00072 Response regulator receiver domain XF_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1114 PF01627 Hpt domain XF_1114 PF00512 His Kinase A (phospho-acceptor) domain XF_1114 PF00072 Response regulator receiver domain XF_1115 PF00378 Enoyl-CoA hydratase/isomerase XF_1116 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XF_1116 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XF_1118 PF08245 Mur ligase middle domain XF_1120 PF00293 NUDIX domain XF_1121 PF02219 Methylenetetrahydrofolate reductase XF_1124 PF02545 Maf-like protein XF_1125 PF00575 S1 RNA binding domain XF_1125 PF10150 Ribonuclease E/G family XF_1127 PF01523 Putative modulator of DNA gyrase XF_1130 PF04751 Protein of unknown function (DUF615) XF_1131 PF01523 Putative modulator of DNA gyrase XF_1132 PF03466 LysR substrate binding domain XF_1132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1133 PF00258 Flavodoxin XF_1136 PF08240 Alcohol dehydrogenase GroES-like domain XF_1136 PF00107 Zinc-binding dehydrogenase XF_1140 PF00132 Bacterial transferase hexapeptide (six repeats) XF_1140 PF14602 Hexapeptide repeat of succinyl-transferase XF_1140 PF12804 MobA-like NTP transferase domain XF_1142 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XF_1142 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XF_1143 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XF_1143 PF02874 ATP synthase alpha/beta family, beta-barrel domain XF_1144 PF00231 ATP synthase XF_1145 PF02874 ATP synthase alpha/beta family, beta-barrel domain XF_1145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XF_1145 PF00306 ATP synthase alpha/beta chain, C terminal domain XF_1146 PF00213 ATP synthase delta (OSCP) subunit XF_1147 PF00430 ATP synthase B/B' CF(0) XF_1148 PF00137 ATP synthase subunit C XF_1149 PF00119 ATP synthase A chain XF_1151 PF00338 Ribosomal protein S10p/S20e XF_1152 PF00297 Ribosomal protein L3 XF_1153 PF00573 Ribosomal protein L4/L1 family XF_1154 PF00276 Ribosomal protein L23 XF_1155 PF00181 Ribosomal Proteins L2, RNA binding domain XF_1155 PF03947 Ribosomal Proteins L2, C-terminal domain XF_1156 PF00203 Ribosomal protein S19 XF_1157 PF00237 Ribosomal protein L22p/L17e XF_1158 PF00189 Ribosomal protein S3, C-terminal domain XF_1158 PF07650 KH domain XF_1159 PF00252 Ribosomal protein L16p/L10e XF_1160 PF00831 Ribosomal L29 protein XF_1161 PF00366 Ribosomal protein S17 XF_1162 PF00238 Ribosomal protein L14p/L23e XF_1163 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 XF_1163 PF00467 KOW motif XF_1164 PF00673 ribosomal L5P family C-terminus XF_1164 PF00281 Ribosomal protein L5 XF_1165 PF00253 Ribosomal protein S14p/S29e XF_1166 PF00410 Ribosomal protein S8 XF_1167 PF00347 Ribosomal protein L6 XF_1168 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast XF_1169 PF00333 Ribosomal protein S5, N-terminal domain XF_1169 PF03719 Ribosomal protein S5, C-terminal domain XF_1170 PF00327 Ribosomal protein L30p/L7e XF_1171 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A XF_1172 PF00344 SecY translocase XF_1173 PF00416 Ribosomal protein S13/S18 XF_1174 PF00411 Ribosomal protein S11 XF_1175 PF00163 Ribosomal protein S4/S9 N-terminal domain XF_1175 PF01479 S4 domain XF_1176 PF01000 RNA polymerase Rpb3/RpoA insert domain XF_1176 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XF_1176 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XF_1177 PF01196 Ribosomal protein L17 XF_1178 PF04380 Membrane fusogenic activity XF_1179 PF01078 Magnesium chelatase, subunit ChlI XF_1179 PF13335 Magnesium chelatase, subunit ChlI C-terminal XF_1181 PF00561 alpha/beta hydrolase fold XF_1182 PF03280 Proteobacterial lipase chaperone protein XF_1183 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XF_1183 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XF_1183 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XF_1186 PF05698 Bacterial trigger factor protein (TF) C-terminus XF_1186 PF05697 Bacterial trigger factor protein (TF) XF_1187 PF00574 Clp protease XF_1188 PF10431 C-terminal, D2-small domain, of ClpB protein XF_1188 PF06689 ClpX C4-type zinc finger XF_1188 PF07724 AAA domain (Cdc48 subfamily) XF_1189 PF05362 Lon protease (S16) C-terminal proteolytic domain XF_1189 PF00004 ATPase family associated with various cellular activities (AAA) XF_1189 PF02190 ATP-dependent protease La (LON) substrate-binding domain XF_1190 PF00216 Bacterial DNA-binding protein XF_1196 PF00317 Ribonucleotide reductase, all-alpha domain XF_1196 PF02867 Ribonucleotide reductase, barrel domain XF_1196 PF03477 ATP cone domain XF_1197 PF00268 Ribonucleotide reductase, small chain XF_1200 PF01479 S4 domain XF_1200 PF00849 RNA pseudouridylate synthase XF_1201 PF13419 Haloacid dehalogenase-like hydrolase XF_1206 PF00830 Ribosomal L28 family XF_1207 PF00471 Ribosomal protein L33 XF_1209 PF13091 PLD-like domain XF_1209 PF13396 Phospholipase_D-nuclease N-terminal XF_1210 PF00043 Glutathione S-transferase, C-terminal domain XF_1210 PF02798 Glutathione S-transferase, N-terminal domain XF_1211 PF00056 lactate/malate dehydrogenase, NAD binding domain XF_1211 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XF_1212 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XF_1216 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XF_1216 PF00529 HlyD membrane-fusion protein of T1SS XF_1220 PF00005 ABC transporter XF_1220 PF03412 Peptidase C39 family XF_1220 PF00664 ABC transporter transmembrane region XF_1222 PF01061 ABC-2 type transporter XF_1223 PF00005 ABC transporter XF_1224 PF05567 Neisseria PilC beta-propeller domain XF_1229 PF00270 DEAD/DEAH box helicase XF_1229 PF08482 ATP-dependent helicase C-terminal XF_1229 PF00271 Helicase conserved C-terminal domain XF_1229 PF04408 Helicase associated domain (HA2) XF_1230 PF13185 GAF domain XF_1231 PF01103 Surface antigen XF_1231 PF17243 POTRA domain TamA domain 1 XF_1232 PF04357 TamB, inner membrane protein subunit of TAM complex XF_1235 PF01555 DNA methylase XF_1243 PF04303 PrpF protein XF_1252 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain XF_1252 PF00207 Alpha-2-macroglobulin family XF_1252 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain XF_1252 PF11974 Bacterial alpha-2-macroglobulin MG3 domain XF_1252 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain XF_1252 PF17962 Bacterial macroglobulin domain 6 XF_1252 PF01835 MG2 domain XF_1252 PF07703 Alpha-2-macroglobulin bait region domain XF_1253 PF07859 alpha/beta hydrolase fold XF_1254 PF12852 Cupin XF_1254 PF12833 Helix-turn-helix domain XF_1257 PF00929 Exonuclease XF_1258 PF05552 Conserved TM helix XF_1258 PF00924 Mechanosensitive ion channel XF_1259 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XF_1259 PF02896 PEP-utilising enzyme, TIM barrel domain XF_1259 PF00391 PEP-utilising enzyme, mobile domain XF_1260 PF03618 Kinase/pyrophosphorylase XF_1267 PF01341 Glycosyl hydrolases family 6 XF_1267 PF00553 Cellulose binding domain XF_1267 PF00041 Fibronectin type III domain XF_1269 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family XF_1269 PF04055 Radical SAM superfamily XF_1270 PF03099 Biotin/lipoate A/B protein ligase family XF_1271 PF04359 Protein of unknown function (DUF493) XF_1278 PF04286 Protein of unknown function (DUF445) XF_1280 PF00571 CBS domain XF_1280 PF03471 Transporter associated domain XF_1280 PF01595 Cyclin M transmembrane N-terminal domain XF_1286 PF00204 DNA gyrase B XF_1286 PF00986 DNA gyrase B subunit, carboxyl terminus XF_1286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1286 PF01751 Toprim domain XF_1288 PF06418 CTP synthase N-terminus XF_1288 PF00117 Glutamine amidotransferase class-I XF_1289 PF00793 DAHP synthetase I family XF_1291 PF00113 Enolase, C-terminal TIM barrel domain XF_1291 PF03952 Enolase, N-terminal domain XF_1292 PF04977 Septum formation initiator XF_1293 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XF_1294 PF02542 YgbB family XF_1295 PF01713 Smr domain XF_1301 PF02470 MlaD protein XF_1301 PF03886 ABC-type transport auxiliary lipoprotein component XF_1302 PF00005 ABC transporter XF_1303 PF02405 Permease MlaE XF_1310 PF04085 rod shape-determining protein MreC XF_1311 PF04093 rod shape-determining protein MreD XF_1312 PF00905 Penicillin binding protein transpeptidase domain XF_1312 PF03717 Penicillin-binding Protein dimerisation domain XF_1313 PF01098 Cell cycle protein XF_1314 PF02547 Queuosine biosynthesis protein XF_1316 PF13291 ACT domain XF_1316 PF02824 TGS domain XF_1316 PF04607 Region found in RelA / SpoT proteins XF_1320 PF03776 Septum formation topological specificity factor MinE XF_1321 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XF_1322 PF03775 Septum formation inhibitor MinC, C-terminal domain XF_1322 PF05209 Septum formation inhibitor MinC, N-terminal domain XF_1326 PF00730 HhH-GPD superfamily base excision DNA repair protein XF_1328 PF01292 Prokaryotic cytochrome b561 XF_1329 PF04264 YceI-like domain XF_1330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1330 PF00512 His Kinase A (phospho-acceptor) domain XF_1330 PF01627 Hpt domain XF_1330 PF00072 Response regulator receiver domain XF_1332 PF01208 Uroporphyrinogen decarboxylase (URO-D) XF_1334 PF01761 3-dehydroquinate synthase XF_1335 PF01202 Shikimate kinase XF_1337 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XF_1337 PF01243 Pyridoxamine 5'-phosphate oxidase XF_1338 PF00749 tRNA synthetases class I (E and Q), catalytic domain XF_1338 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XF_1341 PF03932 CutC family XF_1345 PF00528 Binding-protein-dependent transport system inner membrane component XF_1346 PF00528 Binding-protein-dependent transport system inner membrane component XF_1347 PF12857 TOBE-like domain XF_1347 PF00005 ABC transporter XF_1350 PF04542 Sigma-70 region 2 XF_1350 PF04539 Sigma-70 region 3 XF_1350 PF04545 Sigma-70, region 4 XF_1350 PF03979 Sigma-70 factor, region 1.1 XF_1350 PF04546 Sigma-70, non-essential region XF_1350 PF00140 Sigma-70 factor, region 1.2 XF_1353 PF03989 DNA gyrase C-terminal domain, beta-propeller XF_1353 PF00521 DNA gyrase/topoisomerase IV, subunit A XF_1354 PF01047 MarR family XF_1356 PF12697 Alpha/beta hydrolase family XF_1357 PF00155 Aminotransferase class I and II XF_1360 PF01040 UbiA prenyltransferase family XF_1361 PF00753 Metallo-beta-lactamase superfamily XF_1362 PF12627 Probable RNA and SrmB- binding site of polymerase A XF_1362 PF01966 HD domain XF_1362 PF01743 Poly A polymerase head domain XF_1363 PF14718 Soluble lytic murein transglycosylase L domain XF_1363 PF01464 Transglycosylase SLT domain XF_1365 PF02666 Phosphatidylserine decarboxylase XF_1368 PF05175 Methyltransferase small domain XF_1369 PF01264 Chorismate synthase XF_1371 PF01118 Semialdehyde dehydrogenase, NAD binding domain XF_1371 PF02774 Semialdehyde dehydrogenase, dimerisation domain XF_1373 PF01416 tRNA pseudouridine synthase XF_1374 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XF_1375 PF00291 Pyridoxal-phosphate dependent enzyme XF_1376 PF00290 Tryptophan synthase alpha chain XF_1378 PF18073 Rubredoxin metal binding domain XF_1379 PF00296 Luciferase-like monooxygenase XF_1381 PF00271 Helicase conserved C-terminal domain XF_1381 PF00570 HRDC domain XF_1381 PF16124 RecQ zinc-binding XF_1381 PF09382 RQC domain XF_1381 PF00270 DEAD/DEAH box helicase XF_1382 PF00210 Ferritin-like domain XF_1383 PF11898 Domain of unknown function (DUF3418) XF_1383 PF00271 Helicase conserved C-terminal domain XF_1383 PF04408 Helicase associated domain (HA2) XF_1383 PF00270 DEAD/DEAH box helicase XF_1383 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XF_1385 PF02347 Glycine cleavage system P-protein XF_1387 PF03626 Prokaryotic Cytochrome C oxidase subunit IV XF_1388 PF00510 Cytochrome c oxidase subunit III XF_1389 PF00115 Cytochrome C and Quinol oxidase polypeptide I XF_1390 PF06481 COX Aromatic Rich Motif XF_1390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XF_1391 PF00348 Polyprenyl synthetase XF_1392 PF00436 Single-strand binding protein family XF_1399 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XF_1401 PF01769 Divalent cation transporter XF_1401 PF00571 CBS domain XF_1401 PF03448 MgtE intracellular N domain XF_1402 PF05524 PEP-utilising enzyme, N-terminal XF_1402 PF00391 PEP-utilising enzyme, mobile domain XF_1402 PF02896 PEP-utilising enzyme, TIM barrel domain XF_1403 PF00381 PTS HPr component phosphorylation site XF_1405 PF03668 P-loop ATPase protein family XF_1406 PF07475 HPr Serine kinase C-terminal domain XF_1406 PF02603 HPr Serine kinase N terminus XF_1407 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XF_1408 PF04963 Sigma-54 factor, core binding domain XF_1408 PF04552 Sigma-54, DNA binding domain XF_1408 PF00309 Sigma-54 factor, Activator interacting domain (AID) XF_1409 PF00005 ABC transporter XF_1409 PF12399 Branched-chain amino acid ATP-binding cassette transporter XF_1413 PF00571 CBS domain XF_1413 PF01380 SIS domain XF_1414 PF01722 BolA-like protein XF_1415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XF_1423 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain XF_1423 PF02769 AIR synthase related protein, C-terminal domain XF_1423 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal XF_1424 PF13098 Thioredoxin-like domain XF_1424 PF10411 Disulfide bond isomerase protein N-terminus XF_1425 PF00589 Phage integrase family XF_1425 PF02899 Phage integrase, N-terminal SAM-like domain XF_1426 PF00520 Ion transport protein XF_1426 PF00027 Cyclic nucleotide-binding domain XF_1427 PF00202 Aminotransferase class-III XF_1428 PF04107 Glutamate-cysteine ligase family 2(GCS2) XF_1430 PF01926 50S ribosome-binding GTPase XF_1436 PF01323 DSBA-like thioredoxin domain XF_1437 PF01323 DSBA-like thioredoxin domain XF_1439 PF04356 Protein of unknown function (DUF489) XF_1441 PF00293 NUDIX domain XF_1442 PF02617 ATP-dependent Clp protease adaptor protein ClpS XF_1443 PF02861 Clp amino terminal domain, pathogenicity island component XF_1443 PF10431 C-terminal, D2-small domain, of ClpB protein XF_1443 PF17871 AAA lid domain XF_1443 PF00004 ATPase family associated with various cellular activities (AAA) XF_1443 PF07724 AAA domain (Cdc48 subfamily) XF_1445 PF01176 Translation initiation factor 1A / IF-1 XF_1446 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XF_1448 PF07992 Pyridine nucleotide-disulphide oxidoreductase XF_1450 PF01580 FtsK/SpoIIIE family XF_1450 PF17854 FtsK alpha domain XF_1450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE XF_1450 PF09397 Ftsk gamma domain XF_1452 PF03548 Outer membrane lipoprotein carrier protein LolA XF_1453 PF00004 ATPase family associated with various cellular activities (AAA) XF_1453 PF12002 MgsA AAA+ ATPase C terminal XF_1453 PF16193 AAA C-terminal domain XF_1454 PF02537 CrcB-like protein, Camphor Resistance (CrcB) XF_1455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1455 PF00512 His Kinase A (phospho-acceptor) domain XF_1456 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XF_1460 PF02685 Glucokinase XF_1462 PF07690 Major Facilitator Superfamily XF_1464 PF01380 SIS domain XF_1465 PF01979 Amidohydrolase family XF_1467 PF17848 Acetyl-coA carboxylase zinc finger domain XF_1467 PF01039 Carboxyl transferase domain XF_1468 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XF_1468 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XF_1468 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XF_1468 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XF_1469 PF01522 Polysaccharide deacetylase XF_1470 PF13439 Glycosyltransferase Family 4 XF_1470 PF00534 Glycosyl transferases group 1 XF_1472 PF00355 Rieske [2Fe-2S] domain XF_1473 PF00266 Aminotransferase class-V XF_1474 PF01458 Uncharacterized protein family (UPF0051) XF_1475 PF00005 ABC transporter XF_1476 PF01458 Uncharacterized protein family (UPF0051) XF_1477 PF02082 Transcriptional regulator XF_1479 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XF_1479 PF00326 Prolyl oligopeptidase family XF_1481 PF01678 Diaminopimelate epimerase XF_1483 PF02899 Phage integrase, N-terminal SAM-like domain XF_1483 PF00589 Phage integrase family XF_1484 PF00227 Proteasome subunit XF_1485 PF00004 ATPase family associated with various cellular activities (AAA) XF_1485 PF07724 AAA domain (Cdc48 subfamily) XF_1485 PF10431 C-terminal, D2-small domain, of ClpB protein XF_1487 PF01209 ubiE/COQ5 methyltransferase family XF_1488 PF11838 ERAP1-like C-terminal domain XF_1488 PF01433 Peptidase family M1 domain XF_1494 PF13369 Transglutaminase-like superfamily XF_1497 PF01507 Phosphoadenosine phosphosulfate reductase family XF_1498 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XF_1498 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XF_1499 PF00667 FAD binding domain XF_1499 PF00175 Oxidoreductase NAD-binding domain XF_1499 PF00258 Flavodoxin XF_1500 PF01507 Phosphoadenosine phosphosulfate reductase family XF_1501 PF00009 Elongation factor Tu GTP binding domain XF_1502 PF01192 RNA polymerase Rpb6 XF_1503 PF00625 Guanylate kinase XF_1504 PF03755 YicC-like family, N-terminal region XF_1504 PF08340 Domain of unknown function (DUF1732) XF_1505 PF03725 3' exoribonuclease family, domain 2 XF_1505 PF01138 3' exoribonuclease family, domain 1 XF_1506 PF01725 Ham1 family XF_1507 PF06969 HemN C-terminal domain XF_1507 PF04055 Radical SAM superfamily XF_1510 PF00561 alpha/beta hydrolase fold XF_1512 PF17827 PrmC N-terminal domain XF_1512 PF05175 Methyltransferase small domain XF_1516 PF03895 YadA-like membrane anchor domain XF_1516 PF13018 Extended Signal Peptide of Type V secretion system XF_1516 PF05658 Head domain of trimeric autotransporter adhesin XF_1516 PF05662 Coiled stalk of trimeric autotransporter adhesin XF_1517 PF00437 Type II/IV secretion system protein XF_1517 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XF_1518 PF00482 Type II secretion system (T2SS), protein F XF_1519 PF08334 Type II secretion system (T2SS), protein G XF_1520 PF12019 Type II transport protein GspH XF_1521 PF07963 Prokaryotic N-terminal methylation motif XF_1523 PF03934 Type II secretion system (T2SS), protein K XF_1524 PF05137 Fimbrial assembly protein (PilN) XF_1525 PF10741 Type II secretion system (T2SS), protein M subtype b XF_1527 PF03958 Bacterial type II/III secretion system short domain XF_1527 PF00263 Bacterial type II and III secretion system protein XF_1529 PF05658 Head domain of trimeric autotransporter adhesin XF_1529 PF03895 YadA-like membrane anchor domain XF_1529 PF05662 Coiled stalk of trimeric autotransporter adhesin XF_1530 PF00578 AhpC/TSA family XF_1530 PF10417 C-terminal domain of 1-Cys peroxiredoxin XF_1531 PF07992 Pyridine nucleotide-disulphide oxidoreductase XF_1531 PF13192 Thioredoxin domain XF_1532 PF03466 LysR substrate binding domain XF_1532 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1533 PF00814 Glycoprotease family XF_1534 PF01197 Ribosomal protein L31 XF_1535 PF00285 Citrate synthase, C-terminal domain XF_1536 PF00380 Ribosomal protein S9/S16 XF_1537 PF00572 Ribosomal protein L13 XF_1538 PF03232 Ubiquinone biosynthesis protein COQ7 XF_1539 PF02675 S-adenosylmethionine decarboxylase XF_1540 PF00027 Cyclic nucleotide-binding domain XF_1540 PF00325 Bacterial regulatory proteins, crp family XF_1545 PF00899 ThiF family XF_1548 PF07992 Pyridine nucleotide-disulphide oxidoreductase XF_1548 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XF_1549 PF00364 Biotin-requiring enzyme XF_1549 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XF_1549 PF02817 e3 binding domain XF_1550 PF16078 2-oxoglutarate dehydrogenase N-terminus XF_1550 PF16870 2-oxoglutarate dehydrogenase C-terminal XF_1550 PF02779 Transketolase, pyrimidine binding domain XF_1550 PF00676 Dehydrogenase E1 component XF_1552 PF08007 Cupin superfamily protein XF_1553 PF00206 Lyase XF_1553 PF08328 Adenylosuccinate lyase C-terminal XF_1554 PF10415 Fumarase C C-terminus XF_1554 PF00206 Lyase XF_1558 PF00436 Single-strand binding protein family XF_1564 PF00959 Phage lysozyme XF_1571 PF06381 Protein of unknown function (DUF1073) XF_1574 PF04233 Phage Mu protein F like protein XF_1585 PF10876 Phage tail assemb.y chaperone protein, TAC XF_1589 PF01850 PIN domain XF_1596 PF01381 Helix-turn-helix XF_1597 PF05973 Phage derived protein Gp49-like (DUF891) XF_1602 PF00005 ABC transporter XF_1604 PF00255 Glutathione peroxidase XF_1605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XF_1605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XF_1606 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XF_1606 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XF_1606 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XF_1607 PF04102 SlyX XF_1609 PF07690 Major Facilitator Superfamily XF_1610 PF00294 pfkB family carbohydrate kinase XF_1614 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family XF_1617 PF01209 ubiE/COQ5 methyltransferase family XF_1623 PF13632 Glycosyl transferase family group 2 XF_1624 PF02230 Phospholipase/Carboxylesterase XF_1625 PF07694 5TMR of 5TMR-LYT XF_1625 PF06580 Histidine kinase XF_1626 PF00072 Response regulator receiver domain XF_1626 PF04397 LytTr DNA-binding domain XF_1627 PF03900 Porphobilinogen deaminase, C-terminal domain XF_1627 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XF_1632 PF00437 Type II/IV secretion system protein XF_1633 PF00437 Type II/IV secretion system protein XF_1638 PF00535 Glycosyl transferase family 2 XF_1639 PF02801 Beta-ketoacyl synthase, C-terminal domain XF_1639 PF00109 Beta-ketoacyl synthase, N-terminal domain XF_1641 PF03706 Lysylphosphatidylglycerol synthase TM region XF_1641 PF09924 Uncharacterised conserved protein (DUF2156) XF_1642 PF02899 Phage integrase, N-terminal SAM-like domain XF_1642 PF00589 Phage integrase family XF_1644 PF00436 Single-strand binding protein family XF_1649 PF10065 Uncharacterized conserved protein (DUF2303) XF_1656 PF18495 Antitoxin VbhA XF_1657 PF17841 BID domain of Bartonella effector protein (Bep) XF_1657 PF02661 Fic/DOC family XF_1669 PF00959 Phage lysozyme XF_1676 PF06381 Protein of unknown function (DUF1073) XF_1679 PF04233 Phage Mu protein F like protein XF_1690 PF10876 Phage tail assemb.y chaperone protein, TAC XF_1702 PF01381 Helix-turn-helix XF_1703 PF05973 Phage derived protein Gp49-like (DUF891) XF_1708 PF01381 Helix-turn-helix XF_1711 PF01042 Endoribonuclease L-PSP XF_1713 PF01430 Hsp33 protein XF_1714 PF01430 Hsp33 protein XF_1715 PF00912 Transglycosylase XF_1716 PF05192 MutS domain III XF_1716 PF05188 MutS domain II XF_1716 PF05190 MutS family domain IV XF_1716 PF01624 MutS domain I XF_1716 PF00488 MutS domain V XF_1717 PF01168 Alanine racemase, N-terminal domain XF_1718 PF00589 Phage integrase family XF_1718 PF13356 Arm DNA-binding domain XF_1718 PF14659 Phage integrase, N-terminal SAM-like domain XF_1720 PF01381 Helix-turn-helix XF_1722 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1722 PF03466 LysR substrate binding domain XF_1723 PF00248 Aldo/keto reductase family XF_1724 PF00248 Aldo/keto reductase family XF_1725 PF01361 Tautomerase enzyme XF_1727 PF08240 Alcohol dehydrogenase GroES-like domain XF_1727 PF00107 Zinc-binding dehydrogenase XF_1728 PF07690 Major Facilitator Superfamily XF_1729 PF00248 Aldo/keto reductase family XF_1730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1730 PF03466 LysR substrate binding domain XF_1732 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XF_1733 PF03358 NADPH-dependent FMN reductase XF_1734 PF08240 Alcohol dehydrogenase GroES-like domain XF_1734 PF00107 Zinc-binding dehydrogenase XF_1735 PF07995 Glucose / Sorbosone dehydrogenase XF_1739 PF12706 Beta-lactamase superfamily domain XF_1740 PF07995 Glucose / Sorbosone dehydrogenase XF_1741 PF00106 short chain dehydrogenase XF_1742 PF08450 SMP-30/Gluconolactonase/LRE-like region XF_1743 PF07859 alpha/beta hydrolase fold XF_1744 PF00106 short chain dehydrogenase XF_1745 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XF_1746 PF08240 Alcohol dehydrogenase GroES-like domain XF_1746 PF00107 Zinc-binding dehydrogenase XF_1747 PF03435 Saccharopine dehydrogenase NADP binding domain XF_1747 PF16653 Saccharopine dehydrogenase C-terminal domain XF_1749 PF07690 Major Facilitator Superfamily XF_1750 PF02129 X-Pro dipeptidyl-peptidase (S15 family) XF_1752 PF03466 LysR substrate binding domain XF_1752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1765 PF07690 Major Facilitator Superfamily XF_1768 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XF_1768 PF03466 LysR substrate binding domain XF_1776 PF01131 DNA topoisomerase XF_1776 PF01751 Toprim domain XF_1778 PF00436 Single-strand binding protein family XF_1785 PF13614 AAA domain XF_1791 PF07963 Prokaryotic N-terminal methylation motif XF_1795 PF03309 Type III pantothenate kinase XF_1796 PF03099 Biotin/lipoate A/B protein ligase family XF_1796 PF02237 Biotin protein ligase C terminal domain XF_1796 PF08279 HTH domain XF_1800 PF00581 Rhodanese-like domain XF_1801 PF02556 Preprotein translocase subunit SecB XF_1802 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XF_1802 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XF_1804 PF02086 D12 class N6 adenine-specific DNA methyltransferase XF_1807 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding XF_1807 PF12170 DNA polymerase III tau subunit V interacting with alpha XF_1807 PF12169 DNA polymerase III subunits gamma and tau domain III XF_1808 PF02575 YbaB/EbfC DNA-binding family XF_1809 PF13662 Toprim domain XF_1809 PF02132 RecR protein XF_1810 PF01230 HIT domain XF_1813 PF07726 ATPase family associated with various cellular activities (AAA) XF_1813 PF17863 AAA lid domain XF_1815 PF02620 Large ribosomal RNA subunit accumulation protein YceD XF_1816 PF01783 Ribosomal L32p protein family XF_1817 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XF_1817 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XF_1818 PF08502 LeuA allosteric (dimerisation) domain XF_1818 PF00682 HMGL-like XF_1819 PF00291 Pyridoxal-phosphate dependent enzyme XF_1821 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XF_1821 PF00205 Thiamine pyrophosphate enzyme, central domain XF_1821 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XF_1822 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain XF_1822 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XF_1823 PF11818 C-terminal domain of tail specific protease (DUF3340) XF_1823 PF00595 PDZ domain XF_1823 PF03572 Peptidase family S41 XF_1823 PF17804 Tail specific protease N-terminal domain XF_1825 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family XF_1827 PF02566 OsmC-like protein XF_1828 PF03969 AFG1-like ATPase XF_1830 PF02492 CobW/HypB/UreG, nucleotide-binding domain XF_1830 PF07683 Cobalamin synthesis protein cobW C-terminal domain XF_1831 PF00551 Formyl transferase XF_1833 PF03109 ABC1 family XF_1835 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XF_1835 PF07055 Enoyl reductase FAD binding domain XF_1835 PF12241 Trans-2-enoyl-CoA reductase catalytic region XF_1840 PF04264 YceI-like domain XF_1841 PF02673 Bacitracin resistance protein BacA XF_1842 PF03951 Glutamine synthetase, beta-Grasp domain XF_1842 PF00120 Glutamine synthetase, catalytic domain XF_1843 PF00543 Nitrogen regulatory protein P-II XF_1844 PF00909 Ammonium Transporter Family XF_1845 PF01751 Toprim domain XF_1845 PF01131 DNA topoisomerase XF_1846 PF01131 DNA topoisomerase XF_1846 PF01751 Toprim domain XF_1847 PF13700 Domain of unknown function (DUF4158) XF_1847 PF01526 Tn3 transposase DDE domain XF_1848 PF00158 Sigma-54 interaction domain XF_1848 PF00072 Response regulator receiver domain XF_1848 PF02954 Bacterial regulatory protein, Fis family XF_1849 PF00989 PAS fold XF_1849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1849 PF00512 His Kinase A (phospho-acceptor) domain XF_1850 PF07282 Putative transposase DNA-binding domain XF_1850 PF01385 Probable transposase XF_1850 PF12323 Helix-turn-helix domain XF_1851 PF12951 Passenger-associated-transport-repeat XF_1851 PF00082 Subtilase family XF_1851 PF03797 Autotransporter beta-domain XF_1855 PF05683 Fumarase C-terminus XF_1855 PF05681 Fumarate hydratase (Fumerase) XF_1856 PF00152 tRNA synthetases class II (D, K and N) XF_1856 PF02938 GAD domain XF_1856 PF01336 OB-fold nucleic acid binding domain XF_1858 PF06508 Queuosine biosynthesis protein QueC XF_1862 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system XF_1886 PF00300 Histidine phosphatase superfamily (branch 1) XF_1887 PF10459 Peptidase S46 XF_1888 PF13667 ThiC-associated domain XF_1888 PF01964 Radical SAM ThiC family XF_1889 PF00970 Oxidoreductase FAD-binding domain XF_1889 PF00175 Oxidoreductase NAD-binding domain XF_1890 PF00255 Glutathione peroxidase XF_1891 PF00854 POT family XF_1892 PF04493 Endonuclease V XF_1893 PF00300 Histidine phosphatase superfamily (branch 1) XF_1894 PF04055 Radical SAM superfamily XF_1896 PF00691 OmpA family XF_1897 PF07676 WD40-like Beta Propeller Repeat XF_1897 PF04052 TolB amino-terminal domain XF_1899 PF02472 Biopolymer transport protein ExbD/TolR XF_1900 PF01618 MotA/TolQ/ExbB proton channel family XF_1901 PF03061 Thioesterase superfamily XF_1902 PF05491 RuvB C-terminal winged helix domain XF_1902 PF05496 Holliday junction DNA helicase RuvB P-loop domain XF_1902 PF17864 RuvB AAA lid domain XF_1903 PF02705 K+ potassium transporter XF_1904 PF01330 RuvA N terminal domain XF_1904 PF07499 RuvA, C-terminal domain XF_1905 PF02075 Crossover junction endodeoxyribonuclease RuvC XF_1906 PF01709 Transcriptional regulator XF_1908 PF04362 Bacterial Fe(2+) trafficking XF_1909 PF00633 Helix-hairpin-helix motif XF_1909 PF14815 NUDIX domain XF_1909 PF00730 HhH-GPD superfamily base excision DNA repair protein XF_1910 PF02881 SRP54-type protein, helical bundle domain XF_1910 PF00448 SRP54-type protein, GTPase domain XF_1913 PF01026 TatD related DNase XF_1914 PF04715 Anthranilate synthase component I, N terminal region XF_1914 PF00425 chorismate binding enzyme XF_1915 PF00117 Glutamine amidotransferase class-I XF_1920 PF01371 Trp repressor protein XF_1921 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XF_1921 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XF_1923 PF02445 Quinolinate synthetase A protein XF_1924 PF02910 Fumarate reductase flavoprotein C-term XF_1924 PF00890 FAD binding domain XF_1925 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XF_1925 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XF_1928 PF00072 Response regulator receiver domain XF_1928 PF00486 Transcriptional regulatory protein, C terminal XF_1929 PF00892 EamA-like transporter family XF_1934 PF01648 4'-phosphopantetheinyl transferase superfamily XF_1935 PF02527 rRNA small subunit methyltransferase G XF_1936 PF02779 Transketolase, pyrimidine binding domain XF_1936 PF00456 Transketolase, thiamine diphosphate binding domain XF_1936 PF02780 Transketolase, C-terminal domain XF_1937 PF00375 Sodium:dicarboxylate symporter family XF_1940 PF01625 Peptide methionine sulfoxide reductase XF_1944 PF01432 Peptidase family M3 XF_1946 PF02875 Mur ligase family, glutamate ligase domain XF_1946 PF08245 Mur ligase middle domain XF_1949 PF00156 Phosphoribosyl transferase domain XF_1952 PF01584 CheW-like domain XF_1952 PF01627 Hpt domain XF_1952 PF00072 Response regulator receiver domain XF_1952 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_1953 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XF_1953 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XF_1954 PF01584 CheW-like domain XF_1955 PF00072 Response regulator receiver domain XF_1956 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XF_1956 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XF_1959 PF02092 Glycyl-tRNA synthetase beta subunit XF_1959 PF05746 DALR anticodon binding domain XF_1960 PF02091 Glycyl-tRNA synthetase alpha subunit XF_1961 PF02540 NAD synthase XF_1961 PF00795 Carbon-nitrogen hydrolase XF_1964 PF03692 Putative zinc- or iron-chelating domain XF_1965 PF00561 alpha/beta hydrolase fold XF_1968 PF18273 Type III R-M EcoP15I C-terminal domain XF_1968 PF01555 DNA methylase XF_1970 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XF_1970 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XF_1972 PF00588 SpoU rRNA Methylase family XF_1975 PF01808 AICARFT/IMPCHase bienzyme XF_1975 PF02142 MGS-like domain XF_1976 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XF_1976 PF02843 Phosphoribosylglycinamide synthetase, C domain XF_1976 PF02844 Phosphoribosylglycinamide synthetase, N domain XF_1978 PF12805 FUSC-like inner membrane protein yccS XF_1979 PF03186 CobD/Cbib protein XF_1981 PF03895 YadA-like membrane anchor domain XF_1981 PF05658 Head domain of trimeric autotransporter adhesin XF_1981 PF05662 Coiled stalk of trimeric autotransporter adhesin XF_1983 PF01227 GTP cyclohydrolase I XF_1984 PF00132 Bacterial transferase hexapeptide (six repeats) XF_1985 PF08032 RNA 2'-O ribose methyltransferase substrate binding XF_1985 PF00588 SpoU rRNA Methylase family XF_1987 PF00575 S1 RNA binding domain XF_1987 PF00773 RNB domain XF_1987 PF08206 Ribonuclease B OB domain XF_1987 PF08461 Ribonuclease R winged-helix domain XF_1987 PF17876 Cold shock domain XF_1990 PF08534 Redoxin XF_1992 PF00925 GTP cyclohydrolase II XF_1994 PF00535 Glycosyl transferase family 2 XF_1996 PF01381 Helix-turn-helix XF_1998 PF02954 Bacterial regulatory protein, Fis family XF_1999 PF01063 Amino-transferase class IV XF_2008 PF00293 NUDIX domain XF_2009 PF05195 Aminopeptidase P, N-terminal domain XF_2009 PF00557 Metallopeptidase family M24 XF_2010 PF03695 Uncharacterised protein family (UPF0149) XF_2012 PF05164 Cell division protein ZapA XF_2013 PF01812 5-formyltetrahydrofolate cyclo-ligase family XF_2015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XF_2019 PF00999 Sodium/hydrogen exchanger family XF_2022 PF00929 Exonuclease XF_2022 PF08411 Exonuclease C-terminal XF_2024 PF12706 Beta-lactamase superfamily domain XF_2025 PF18818 Metallopeptidase superfamily domain XF_2025 PF08401 Domain of unknown function (DUF1738) XF_2025 PF13362 Toprim domain XF_2028 PF00239 Resolvase, N terminal domain XF_2028 PF02796 Helix-turn-helix domain of resolvase XF_2031 PF09386 Antitoxin ParD XF_2032 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XF_2049 PF03743 Bacterial conjugation TrbI-like protein XF_2051 PF03524 Conjugal transfer protein XF_2055 PF04956 TrbC/VIRB2 family XF_2056 PF00437 Type II/IV secretion system protein XF_2057 PF02534 Type IV secretory system Conjugative DNA transfer XF_2058 PF10502 Signal peptidase, peptidase S26 XF_2059 PF01131 DNA topoisomerase XF_2059 PF01751 Toprim domain XF_2061 PF08401 Domain of unknown function (DUF1738) XF_2061 PF18818 Metallopeptidase superfamily domain XF_2061 PF13362 Toprim domain XF_2071 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH XF_2075 PF00171 Aldehyde dehydrogenase family XF_2075 PF01619 Proline dehydrogenase XF_2075 PF14850 DNA-binding domain of Proline dehydrogenase XF_2075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain XF_2080 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ XF_2081 PF04221 RelB antitoxin XF_2083 PF00873 AcrB/AcrD/AcrF family XF_2085 PF00440 Bacterial regulatory proteins, tetR family XF_2090 PF01513 ATP-NAD kinase XF_2091 PF05088 Bacterial NAD-glutamate dehydrogenase XF_2093 PF00529 HlyD membrane-fusion protein of T1SS XF_2093 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XF_2094 PF00873 AcrB/AcrD/AcrF family XF_2095 PF00132 Bacterial transferase hexapeptide (six repeats) XF_2096 PF02649 Type I GTP cyclohydrolase folE2 XF_2099 PF13649 Methyltransferase domain XF_2106 PF01134 Glucose inhibited division protein A XF_2106 PF13932 GidA associated domain XF_2122 PF01807 CHC2 zinc finger XF_2122 PF08275 DNA primase catalytic core, N-terminal domain XF_2122 PF08278 DNA primase DnaG DnaB-binding XF_2122 PF10410 DnaB-helicase binding domain of primase XF_2133 PF12848 ABC transporter XF_2133 PF00005 ABC transporter XF_2134 PF07715 TonB-dependent Receptor Plug Domain XF_2134 PF00593 TonB dependent receptor XF_2135 PF01323 DSBA-like thioredoxin domain XF_2137 PF07715 TonB-dependent Receptor Plug Domain XF_2137 PF00593 TonB dependent receptor XF_2140 PF02254 TrkA-N domain XF_2140 PF00999 Sodium/hydrogen exchanger family XF_2141 PF12849 PBP superfamily domain XF_2142 PF00528 Binding-protein-dependent transport system inner membrane component XF_2143 PF00528 Binding-protein-dependent transport system inner membrane component XF_2144 PF00005 ABC transporter XF_2145 PF01895 PhoU domain XF_2146 PF00929 Exonuclease XF_2148 PF00398 Ribosomal RNA adenine dimethylase XF_2149 PF04379 ApaG domain XF_2150 PF00149 Calcineurin-like phosphoesterase XF_2154 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XF_2157 PF00929 Exonuclease XF_2158 PF00075 RNase H XF_2160 PF00753 Metallo-beta-lactamase superfamily XF_2160 PF16123 Hydroxyacylglutathione hydrolase C-terminus XF_2165 PF16921 Tex protein YqgF-like domain XF_2165 PF09371 Tex-like protein N-terminal domain XF_2165 PF00575 S1 RNA binding domain XF_2165 PF17674 HHH domain XF_2171 PF00719 Inorganic pyrophosphatase XF_2174 PF00085 Thioredoxin XF_2176 PF08264 Anticodon-binding domain of tRNA XF_2176 PF00133 tRNA synthetases class I (I, L, M and V) XF_2176 PF13603 Leucyl-tRNA synthetase, Domain 2 XF_2179 PF01467 Cytidylyltransferase-like XF_2184 PF13406 Transglycosylase SLT domain XF_2185 PF03330 Lytic transglycolase XF_2185 PF05036 Sporulation related domain XF_2196 PF13332 Hemagglutinin repeat XF_2196 PF13018 Extended Signal Peptide of Type V secretion system XF_2196 PF04829 Pre-toxin domain with VENN motif XF_2196 PF05860 haemagglutination activity domain XF_2203 PF08207 Elongation factor P (EF-P) KOW-like domain XF_2203 PF01132 Elongation factor P (EF-P) OB domain XF_2203 PF09285 Elongation factor P, C-terminal XF_2205 PF02913 FAD linked oxidases, C-terminal domain XF_2205 PF01565 FAD binding domain XF_2206 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XF_2206 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XF_2206 PF01842 ACT domain XF_2207 PF13520 Amino acid permease XF_2208 PF13520 Amino acid permease XF_2209 PF00596 Class II Aldolase and Adducin N-terminal domain XF_2210 PF03079 ARD/ARD' family XF_2213 PF01502 Phosphoribosyl-AMP cyclohydrolase XF_2213 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XF_2214 PF00977 Histidine biosynthesis protein XF_2215 PF00977 Histidine biosynthesis protein XF_2216 PF00117 Glutamine amidotransferase class-I XF_2217 PF00475 Imidazoleglycerol-phosphate dehydratase XF_2218 PF00155 Aminotransferase class I and II XF_2219 PF00815 Histidinol dehydrogenase XF_2220 PF01634 ATP phosphoribosyltransferase XF_2220 PF08029 HisG, C-terminal domain XF_2222 PF03129 Anticodon binding domain XF_2222 PF13393 Histidyl-tRNA synthetase XF_2223 PF00291 Pyridoxal-phosphate dependent enzyme XF_2223 PF14821 Threonine synthase N terminus XF_2224 PF00288 GHMP kinases N terminal domain XF_2224 PF08544 GHMP kinases C terminal XF_2225 PF03447 Homoserine dehydrogenase, NAD binding domain XF_2225 PF00742 Homoserine dehydrogenase XF_2225 PF13840 ACT domain XF_2225 PF01842 ACT domain XF_2225 PF00696 Amino acid kinase family XF_2226 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XF_2226 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XF_2227 PF03652 Holliday junction resolvase XF_2228 PF02622 Uncharacterized ACR, COG1678 XF_2230 PF07943 Penicillin-binding protein 5, C-terminal domain XF_2230 PF00768 D-alanyl-D-alanine carboxypeptidase XF_2232 PF00141 Peroxidase XF_2233 PF00226 DnaJ domain XF_2233 PF01556 DnaJ C terminal domain XF_2235 PF06832 Penicillin-Binding Protein C-terminus Family XF_2235 PF00905 Penicillin binding protein transpeptidase domain XF_2235 PF00912 Transglycosylase XF_2237 PF00593 TonB dependent receptor XF_2237 PF07715 TonB-dependent Receptor Plug Domain XF_2239 PF04542 Sigma-70 region 2 XF_2239 PF08281 Sigma-70, region 4 XF_2241 PF13180 PDZ domain XF_2243 PF00679 Elongation factor G C-terminus XF_2243 PF00009 Elongation factor Tu GTP binding domain XF_2243 PF03144 Elongation factor Tu domain 2 XF_2243 PF06421 GTP-binding protein LepA C-terminus XF_2244 PF10502 Signal peptidase, peptidase S26 XF_2246 PF14622 Ribonuclease-III-like XF_2246 PF00035 Double-stranded RNA binding motif XF_2247 PF01926 50S ribosome-binding GTPase XF_2247 PF07650 KH domain XF_2248 PF11967 Recombination protein O N terminal XF_2248 PF02565 Recombination protein O C terminal XF_2249 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XF_2249 PF02779 Transketolase, pyrimidine binding domain XF_2249 PF02780 Transketolase, C-terminal domain XF_2251 PF00474 Sodium:solute symporter family XF_2255 PF16177 Acetyl-coenzyme A synthetase N-terminus XF_2255 PF13193 AMP-binding enzyme C-terminal domain XF_2255 PF00501 AMP-binding enzyme XF_2257 PF02659 Putative manganese efflux pump XF_2259 PF13360 PQQ-like domain XF_2260 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region XF_2260 PF07676 WD40-like Beta Propeller Repeat XF_2260 PF00326 Prolyl oligopeptidase family XF_2261 PF03169 OPT oligopeptide transporter protein XF_2266 PF01266 FAD dependent oxidoreductase XF_2266 PF16901 C-terminal domain of alpha-glycerophosphate oxidase XF_2267 PF00230 Major intrinsic protein XF_2268 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XF_2268 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XF_2270 PF01263 Aldose 1-epimerase XF_2272 PF08267 Cobalamin-independent synthase, N-terminal domain XF_2272 PF01717 Cobalamin-independent synthase, Catalytic domain XF_2273 PF02677 Epoxyqueuosine reductase QueH XF_2274 PF00857 Isochorismatase family XF_2276 PF00501 AMP-binding enzyme XF_2278 PF00535 Glycosyl transferase family 2 XF_2279 PF01370 NAD dependent epimerase/dehydratase family XF_2281 PF02195 ParB-like nuclease domain XF_2281 PF17762 HTH domain found in ParB protein XF_2282 PF13614 AAA domain XF_2286 PF02403 Seryl-tRNA synthetase N-terminal domain XF_2286 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XF_2287 PF03544 Gram-negative bacterial TonB protein C-terminal XF_2297 PF01555 DNA methylase XF_2298 PF01451 Low molecular weight phosphotyrosine protein phosphatase XF_2299 PF02348 Cytidylyltransferase XF_2301 PF10609 NUBPL iron-transfer P-loop NTPase XF_2302 PF00202 Aminotransferase class-III XF_2303 PF13610 DDE domain XF_2305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XF_2306 PF00490 Delta-aminolevulinic acid dehydratase XF_2310 PF01066 CDP-alcohol phosphatidyltransferase XF_2311 PF08459 UvrC Helix-hairpin-helix N-terminal XF_2311 PF02151 UvrB/uvrC motif XF_2311 PF01541 GIY-YIG catalytic domain XF_2313 PF01555 DNA methylase XF_2314 PF00959 Phage lysozyme XF_2324 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XF_2325 PF01842 ACT domain XF_2325 PF00800 Prephenate dehydratase XF_2325 PF01817 Chorismate mutase type II XF_2326 PF00266 Aminotransferase class-V XF_2328 PF12679 ABC-2 family transporter protein XF_2329 PF00005 ABC transporter XF_2331 PF00186 Dihydrofolate reductase XF_2332 PF00303 Thymidylate synthase XF_2333 PF01790 Prolipoprotein diacylglyceryl transferase XF_2334 PF01219 Prokaryotic diacylglycerol kinase XF_2336 PF00486 Transcriptional regulatory protein, C terminal XF_2336 PF00072 Response regulator receiver domain XF_2338 PF01817 Chorismate mutase type II XF_2338 PF02153 Prephenate dehydrogenase XF_2339 PF01556 DnaJ C terminal domain XF_2339 PF00226 DnaJ domain XF_2339 PF00684 DnaJ central domain XF_2340 PF00012 Hsp70 protein XF_2341 PF01025 GrpE XF_2342 PF01628 HrcA protein C terminal domain XF_2342 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding XF_2343 PF02463 RecF/RecN/SMC N terminal domain XF_2344 PF01475 Ferric uptake regulator family XF_2345 PF04355 SmpA / OmlA family XF_2346 PF03658 RnfH family Ubiquitin XF_2348 PF01668 SmpB protein XF_2352 PF00313 'Cold-shock' DNA-binding domain XF_2353 PF01048 Phosphorylase superfamily XF_2355 PF00933 Glycosyl hydrolase family 3 N terminal domain XF_2358 PF05958 tRNA (Uracil-5-)-methyltransferase XF_2359 PF00486 Transcriptional regulatory protein, C terminal XF_2359 PF00072 Response regulator receiver domain XF_2360 PF03808 Glycosyl transferase WecB/TagA/CpsF family XF_2362 PF14667 Polysaccharide biosynthesis C-terminal domain XF_2364 PF13439 Glycosyltransferase Family 4 XF_2364 PF00534 Glycosyl transferases group 1 XF_2367 PF02397 Bacterial sugar transferase XF_2372 PF00180 Isocitrate/isopropylmalate dehydrogenase XF_2374 PF00694 Aconitase C-terminal domain XF_2375 PF00330 Aconitase family (aconitate hydratase) XF_2383 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XF_2383 PF14489 QueF-like protein XF_2384 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion XF_2385 PF00873 AcrB/AcrD/AcrF family XF_2386 PF00873 AcrB/AcrD/AcrF family XF_2389 PF08240 Alcohol dehydrogenase GroES-like domain XF_2389 PF00107 Zinc-binding dehydrogenase XF_2394 PF00462 Glutaredoxin XF_2395 PF01522 Polysaccharide deacetylase XF_2397 PF00005 ABC transporter XF_2397 PF00664 ABC transporter transmembrane region XF_2397 PF03412 Peptidase C39 family XF_2409 PF13087 AAA domain XF_2409 PF13091 PLD-like domain XF_2416 PF02401 LytB protein XF_2417 PF01252 Signal peptidase (SPase) II XF_2418 PF06827 Zinc finger found in FPG and IleRS XF_2418 PF08264 Anticodon-binding domain of tRNA XF_2418 PF00133 tRNA synthetases class I (I, L, M and V) XF_2419 PF06574 FAD synthetase XF_2419 PF01687 Riboflavin kinase XF_2420 PF03023 Lipid II flippase MurJ XF_2421 PF01649 Ribosomal protein S20 XF_2422 PF01018 GTP1/OBG XF_2422 PF01926 50S ribosome-binding GTPase XF_2423 PF01016 Ribosomal L27 protein XF_2424 PF00829 Ribosomal prokaryotic L21 protein XF_2426 PF00005 ABC transporter XF_2426 PF17760 UvrA interaction domain XF_2426 PF17755 UvrA DNA-binding domain XF_2429 PF00117 Glutamine amidotransferase class-I XF_2429 PF00958 GMP synthase C terminal domain XF_2429 PF02540 NAD synthase XF_2430 PF00478 IMP dehydrogenase / GMP reductase domain XF_2430 PF00571 CBS domain XF_2431 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XF_2431 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XF_2432 PF00483 Nucleotidyl transferase XF_2433 PF02719 Polysaccharide biosynthesis protein XF_2434 PF00953 Glycosyl transferase family 4 XF_2435 PF18073 Rubredoxin metal binding domain XF_2437 PF00216 Bacterial DNA-binding protein XF_2438 PF00575 S1 RNA binding domain XF_2439 PF02224 Cytidylate kinase XF_2440 PF00444 Ribosomal protein L36 XF_2442 PF04371 Porphyromonas-type peptidyl-arginine deiminase XF_2443 PF00795 Carbon-nitrogen hydrolase XF_2446 PF00528 Binding-protein-dependent transport system inner membrane component XF_2447 PF00528 Binding-protein-dependent transport system inner membrane component XF_2451 PF02616 Segregation and condensation protein ScpA XF_2452 PF04079 Segregation and condensation complex subunit ScpB XF_2453 PF01479 S4 domain XF_2453 PF00849 RNA pseudouridylate synthase XF_2455 PF00005 ABC transporter XF_2456 PF03379 CcmB protein XF_2457 PF01578 Cytochrome C assembly protein XF_2459 PF03100 CcmE XF_2460 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal XF_2460 PF01578 Cytochrome C assembly protein XF_2461 PF08534 Redoxin XF_2462 PF03918 Cytochrome C biogenesis protein XF_2465 PF00561 alpha/beta hydrolase fold XF_2470 PF13419 Haloacid dehalogenase-like hydrolase XF_2472 PF01979 Amidohydrolase family XF_2473 PF09285 Elongation factor P, C-terminal XF_2473 PF01132 Elongation factor P (EF-P) OB domain XF_2473 PF08207 Elongation factor P (EF-P) KOW-like domain XF_2474 PF04055 Radical SAM superfamily XF_2475 PF00588 SpoU rRNA Methylase family XF_2476 PF00459 Inositol monophosphatase family XF_2485 PF04984 Phage tail sheath protein subtilisin-like domain XF_2485 PF17482 Phage tail sheath C-terminal domain XF_2490 PF15723 Motility quorum-sensing regulator, toxin of MqsA XF_2491 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA XF_2504 PF00959 Phage lysozyme XF_2524 PF02498 BRO family, N-terminal domain XF_2524 PF10548 P22AR C-terminal domain XF_2530 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain XF_2530 PF00589 Phage integrase family XF_2534 PF00072 Response regulator receiver domain XF_2534 PF00486 Transcriptional regulatory protein, C terminal XF_2535 PF00672 HAMP domain XF_2535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_2535 PF00512 His Kinase A (phospho-acceptor) domain XF_2536 PF01121 Dephospho-CoA kinase XF_2537 PF06750 Bacterial Peptidase A24 N-terminal domain XF_2537 PF01478 Type IV leader peptidase family XF_2538 PF00482 Type II secretion system (T2SS), protein F XF_2539 PF00114 Pilin (bacterial filament) XF_2539 PF07963 Prokaryotic N-terminal methylation motif XF_2544 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XF_2544 PF00437 Type II/IV secretion system protein XF_2545 PF02954 Bacterial regulatory protein, Fis family XF_2545 PF00072 Response regulator receiver domain XF_2545 PF00158 Sigma-54 interaction domain XF_2546 PF00512 His Kinase A (phospho-acceptor) domain XF_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_2547 PF08442 ATP-grasp domain XF_2547 PF00549 CoA-ligase XF_2548 PF00549 CoA-ligase XF_2548 PF02629 CoA binding domain XF_2550 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XF_2550 PF17287 POTRA domain XF_2550 PF08479 POTRA domain, ShlB-type XF_2552 PF03989 DNA gyrase C-terminal domain, beta-propeller XF_2552 PF00521 DNA gyrase/topoisomerase IV, subunit A XF_2553 PF01008 Initiation factor 2 subunit family XF_2555 PF00152 tRNA synthetases class II (D, K and N) XF_2556 PF03120 NAD-dependent DNA ligase OB-fold domain XF_2556 PF12826 Helix-hairpin-helix motif XF_2556 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XF_2556 PF00533 BRCA1 C Terminus (BRCT) domain XF_2556 PF01653 NAD-dependent DNA ligase adenylation domain XF_2557 PF04354 ZipA, C-terminal FtsZ-binding domain XF_2558 PF02463 RecF/RecN/SMC N terminal domain XF_2559 PF03948 Ribosomal protein L9, C-terminal domain XF_2559 PF01281 Ribosomal protein L9, N-terminal domain XF_2560 PF01084 Ribosomal protein S18 XF_2561 PF01250 Ribosomal protein S6 XF_2562 PF01521 Iron-sulphur cluster biosynthesis XF_2563 PF01336 OB-fold nucleic acid binding domain XF_2563 PF00152 tRNA synthetases class II (D, K and N) XF_2567 PF01061 ABC-2 type transporter XF_2568 PF00005 ABC transporter XF_2571 PF01180 Dihydroorotate dehydrogenase XF_2572 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XF_2572 PF01565 FAD binding domain XF_2573 PF00892 EamA-like transporter family XF_2574 PF01569 PAP2 superfamily XF_2575 PF04551 GcpE protein XF_2578 PF00072 Response regulator receiver domain XF_2579 PF00889 Elongation factor TS XF_2580 PF00318 Ribosomal protein S2 XF_2582 PF00664 ABC transporter transmembrane region XF_2582 PF00005 ABC transporter XF_2586 PF02321 Outer membrane efflux protein XF_2588 PF12850 Calcineurin-like phosphoesterase superfamily domain XF_2590 PF02541 Ppx/GppA phosphatase family XF_2591 PF02503 Polyphosphate kinase middle domain XF_2591 PF13089 Polyphosphate kinase N-terminal domain XF_2591 PF17941 Polyphosphate kinase C-terminal domain 1 XF_2591 PF13090 Polyphosphate kinase C-terminal domain 2 XF_2592 PF00989 PAS fold XF_2592 PF11808 Phosphate regulon sensor protein PhoR XF_2592 PF00512 His Kinase A (phospho-acceptor) domain XF_2592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XF_2593 PF00486 Transcriptional regulatory protein, C terminal XF_2593 PF00072 Response regulator receiver domain XF_2594 PF01435 Peptidase family M48 XF_2594 PF13181 Tetratricopeptide repeat XF_2595 PF00462 Glutaredoxin XF_2596 PF18324 Hypothetical protein TT1725 XF_2596 PF00180 Isocitrate/isopropylmalate dehydrogenase XF_2598 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XF_2598 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XF_2601 PF00037 4Fe-4S binding domain XF_2601 PF11953 Domain of unknown function (DUF3470) XF_2603 PF01106 NifU-like domain XF_2604 PF01329 Pterin 4 alpha carbinolamine dehydratase XF_2606 PF01479 S4 domain XF_2606 PF00849 RNA pseudouridylate synthase XF_2607 PF00575 S1 RNA binding domain XF_2607 PF10150 Ribonuclease E/G family XF_2607 PF12111 Polyribonucleotide phosphorylase C terminal XF_2608 PF00196 Bacterial regulatory proteins, luxR family XF_2608 PF00072 Response regulator receiver domain XF_2614 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XF_2614 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XF_2615 PF00545 ribonuclease XF_2619 PF02696 Uncharacterized ACR, YdiU/UPF0061 family XF_2622 PF00313 'Cold-shock' DNA-binding domain XF_2624 PF00563 EAL domain XF_2624 PF00990 Diguanylate cyclase, GGDEF domain XF_2624 PF00072 Response regulator receiver domain XF_2625 PF01435 Peptidase family M48 XF_2628 PF03143 Elongation factor Tu C-terminal domain XF_2628 PF03144 Elongation factor Tu domain 2 XF_2628 PF00009 Elongation factor Tu GTP binding domain XF_2629 PF03764 Elongation factor G, domain IV XF_2629 PF14492 Elongation Factor G, domain II XF_2629 PF00679 Elongation factor G C-terminus XF_2629 PF03144 Elongation factor Tu domain 2 XF_2629 PF00009 Elongation factor Tu GTP binding domain XF_2630 PF00177 Ribosomal protein S7p/S5e XF_2631 PF00164 Ribosomal protein S12/S23 XF_2632 PF04998 RNA polymerase Rpb1, domain 5 XF_2632 PF05000 RNA polymerase Rpb1, domain 4 XF_2632 PF04997 RNA polymerase Rpb1, domain 1 XF_2632 PF04983 RNA polymerase Rpb1, domain 3 XF_2632 PF00623 RNA polymerase Rpb1, domain 2 XF_2633 PF00562 RNA polymerase Rpb2, domain 6 XF_2633 PF10385 RNA polymerase beta subunit external 1 domain XF_2633 PF04565 RNA polymerase Rpb2, domain 3 XF_2633 PF04563 RNA polymerase beta subunit XF_2633 PF04560 RNA polymerase Rpb2, domain 7 XF_2633 PF04561 RNA polymerase Rpb2, domain 2 XF_2634 PF16320 Ribosomal protein L7/L12 dimerisation domain XF_2634 PF00542 Ribosomal protein L7/L12 C-terminal domain XF_2635 PF00466 Ribosomal protein L10 XF_2636 PF00687 Ribosomal protein L1p/L10e family XF_2637 PF00298 Ribosomal protein L11, RNA binding domain XF_2637 PF03946 Ribosomal protein L11, N-terminal domain XF_2638 PF00467 KOW motif XF_2638 PF02357 Transcription termination factor nusG XF_2639 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XF_2640 PF00009 Elongation factor Tu GTP binding domain XF_2640 PF03144 Elongation factor Tu domain 2 XF_2640 PF03143 Elongation factor Tu C-terminal domain XF_2641 PF06071 Protein of unknown function (DUF933) XF_2641 PF01926 50S ribosome-binding GTPase XF_2642 PF01195 Peptidyl-tRNA hydrolase XF_2643 PF01386 Ribosomal L25p family XF_2643 PF14693 Ribosomal protein TL5, C-terminal domain XF_2644 PF14572 Phosphoribosyl synthetase-associated domain XF_2644 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XF_2645 PF08544 GHMP kinases C terminal XF_2645 PF00288 GHMP kinases N terminal domain XF_2646 PF03550 Outer membrane lipoprotein LolB XF_2648 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XF_2648 PF01488 Shikimate / quinate 5-dehydrogenase XF_2648 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XF_2649 PF03462 PCRF domain XF_2649 PF00472 RF-1 domain XF_2651 PF01170 Putative RNA methylase family UPF0020 XF_2651 PF02926 THUMP domain XF_2651 PF10672 S-adenosylmethionine-dependent methyltransferase XF_2666 PF01914 MarC family integral membrane protein XF_2669 PF00462 Glutaredoxin XF_2671 PF02222 ATP-grasp domain XF_2671 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain XF_2672 PF00731 AIR carboxylase XF_2673 PF01926 50S ribosome-binding GTPase XF_2673 PF10396 GTP-binding protein TrmE N-terminus XF_2673 PF12631 MnmE helical domain XF_2677 PF07732 Multicopper oxidase XF_2677 PF07731 Multicopper oxidase XF_2680 PF00580 UvrD/REP helicase N-terminal domain XF_2680 PF13361 UvrD-like helicase C-terminal domain XF_2682 PF04349 Periplasmic glucan biosynthesis protein, MdoG XF_2685 PF01343 Peptidase family S49 XF_2686 PF01554 MatE XF_2689 PF18319 PriA DNA helicase Cys-rich region (CRR) domain XF_2689 PF18074 Primosomal protein N C-terminal domain XF_2689 PF17764 3′ DNA-binding domain (3′BD) XF_2689 PF00271 Helicase conserved C-terminal domain XF_2689 PF00270 DEAD/DEAH box helicase XF_2691 PF04542 Sigma-70 region 2 XF_2691 PF04545 Sigma-70, region 4 XF_2692 PF03167 Uracil DNA glycosylase superfamily XF_2694 PF18075 FtsX extracellular domain XF_2695 PF00005 ABC transporter XF_2696 PF00270 DEAD/DEAH box helicase XF_2696 PF00271 Helicase conserved C-terminal domain XF_2696 PF12300 ATP-dependent RNA helicase RhlB XF_2698 PF00085 Thioredoxin XF_2699 PF07497 Rho termination factor, RNA-binding domain XF_2699 PF07498 Rho termination factor, N-terminal domain XF_2699 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XF_2700 PF03971 Monomeric isocitrate dehydrogenase XF_2704 PF03572 Peptidase family S41 XF_2704 PF13180 PDZ domain XF_2705 PF01551 Peptidase family M23 XF_2708 PF00150 Cellulase (glycosyl hydrolase family 5) XF_2709 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XF_2709 PF07992 Pyridine nucleotide-disulphide oxidoreductase XF_2710 PF00310 Glutamine amidotransferases class-II XF_2710 PF04898 Glutamate synthase central domain XF_2710 PF01493 GXGXG motif XF_2710 PF01645 Conserved region in glutamate synthase XF_2712 PF03807 NADP oxidoreductase coenzyme F420-dependent XF_2712 PF14748 Pyrroline-5-carboxylate reductase dimerisation XF_2716 PF00106 short chain dehydrogenase XF_2721 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XF_2721 PF11867 Domain of unknown function (DUF3387) XF_2721 PF18766 SWI2/SNF2 ATPase XF_2723 PF12161 HsdM N-terminal domain XF_2723 PF02384 N-6 DNA Methylase XF_2725 PF18766 SWI2/SNF2 ATPase XF_2725 PF12008 Type I restriction and modification enzyme - subunit R C terminal XF_2725 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XF_2726 PF01420 Type I restriction modification DNA specificity domain XF_2728 PF02384 N-6 DNA Methylase XF_2728 PF12161 HsdM N-terminal domain XF_2730 PF01810 LysE type translocator XF_2733 PF11855 Protein of unknown function (DUF3375) XF_2739 PF18766 SWI2/SNF2 ATPase XF_2739 PF11867 Domain of unknown function (DUF3387) XF_2739 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) XF_2742 PF02384 N-6 DNA Methylase XF_2759 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) XF_2759 PF06594 Haemolysin-type calcium binding protein related domain XF_2763 PF01381 Helix-turn-helix XF_2764 PF05973 Phage derived protein Gp49-like (DUF891) XF_2775 PF13332 Hemagglutinin repeat XF_2775 PF05860 haemagglutination activity domain XF_2775 PF13018 Extended Signal Peptide of Type V secretion system XF_2775 PF04829 Pre-toxin domain with VENN motif XF_2778 PF01926 50S ribosome-binding GTPase XF_2778 PF12631 MnmE helical domain XF_2778 PF10396 GTP-binding protein TrmE N-terminus XF_2780 PF14849 YidC periplasmic domain XF_2780 PF02096 60Kd inner membrane protein XF_2781 PF00825 Ribonuclease P XF_2782 PF00468 Ribosomal protein L34 XF_a0001 PF01381 Helix-turn-helix XF_a0003 PF01131 DNA topoisomerase XF_a0003 PF01751 Toprim domain XF_a0003 PF01396 Topoisomerase DNA binding C4 zinc finger XF_a0007 PF03135 CagE, TrbE, VirB family, component of type IV transporter system XF_a0012 PF04335 VirB8 protein XF_a0013 PF03524 Conjugal transfer protein XF_a0014 PF03743 Bacterial conjugation TrbI-like protein XF_a0015 PF00437 Type II/IV secretion system protein XF_a0016 PF02534 Type IV secretory system Conjugative DNA transfer XF_a0019 PF02796 Helix-turn-helix domain of resolvase XF_a0019 PF00239 Resolvase, N terminal domain XF_a0029 PF05016 ParE toxin of type II toxin-antitoxin system, parDE XF_a0032 PF12697 Alpha/beta hydrolase family XF_a0040 PF03743 Bacterial conjugation TrbI-like protein XF_a0042 PF03524 Conjugal transfer protein XF_a0045 PF05973 Phage derived protein Gp49-like (DUF891) XF_a0059 PF02195 ParB-like nuclease domain XF_a0060 PF13614 AAA domain XF_a0061 PF00436 Single-strand binding protein family