locus-tag class description Xfasm12_0001 PF00308 Bacterial dnaA protein Xfasm12_0001 PF08299 Bacterial dnaA protein helix-turn-helix Xfasm12_0001 PF11638 DnaA N-terminal domain Xfasm12_0002 PF02767 DNA polymerase III beta subunit, central domain Xfasm12_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Xfasm12_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Xfasm12_0003 PF02463 RecF/RecN/SMC N terminal domain Xfasm12_0005 PF01751 Toprim domain Xfasm12_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0005 PF18053 DNA gyrase B subunit insert domain Xfasm12_0005 PF00204 DNA gyrase B Xfasm12_0005 PF00986 DNA gyrase B subunit, carboxyl terminus Xfasm12_0007 PF01435 Peptidase family M48 Xfasm12_0009 PF03544 Gram-negative bacterial TonB protein C-terminal Xfasm12_0010 PF01618 MotA/TolQ/ExbB proton channel family Xfasm12_0011 PF02472 Biopolymer transport protein ExbD/TolR Xfasm12_0012 PF02472 Biopolymer transport protein ExbD/TolR Xfasm12_0017 PF01218 Coproporphyrinogen III oxidase Xfasm12_0021 PF00793 DAHP synthetase I family Xfasm12_0027 PF05567 Neisseria PilC beta-propeller domain Xfasm12_0029 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Xfasm12_0030 PF00155 Aminotransferase class I and II Xfasm12_0033 PF01741 Large-conductance mechanosensitive channel, MscL Xfasm12_0037 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Xfasm12_0039 PF00270 DEAD/DEAH box helicase Xfasm12_0039 PF02559 CarD-like/TRCF domain Xfasm12_0039 PF00271 Helicase conserved C-terminal domain Xfasm12_0039 PF03461 TRCF domain Xfasm12_0039 PF17757 UvrB interaction domain Xfasm12_0040 PF01220 Dehydroquinase class II Xfasm12_0041 PF00364 Biotin-requiring enzyme Xfasm12_0042 PF02785 Biotin carboxylase C-terminal domain Xfasm12_0042 PF00289 Biotin carboxylase, N-terminal domain Xfasm12_0042 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Xfasm12_0043 PF13361 UvrD-like helicase C-terminal domain Xfasm12_0043 PF00580 UvrD/REP helicase N-terminal domain Xfasm12_0044 PF00970 Oxidoreductase FAD-binding domain Xfasm12_0044 PF00042 Globin Xfasm12_0044 PF00175 Oxidoreductase NAD-binding domain Xfasm12_0046 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Xfasm12_0047 PF08535 KorB domain Xfasm12_0047 PF02195 ParB-like nuclease domain Xfasm12_0047 PF06613 KorB C-terminal beta-barrel domain Xfasm12_0049 PF00156 Phosphoribosyl transferase domain Xfasm12_0050 PF04055 Radical SAM superfamily Xfasm12_0050 PF06968 Biotin and Thiamin Synthesis associated domain Xfasm12_0051 PF01734 Patatin-like phospholipase Xfasm12_0053 PF01040 UbiA prenyltransferase family Xfasm12_0055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Xfasm12_0055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Xfasm12_0056 PF01578 Cytochrome C assembly protein Xfasm12_0057 PF02881 SRP54-type protein, helical bundle domain Xfasm12_0057 PF02978 Signal peptide binding domain Xfasm12_0057 PF00448 SRP54-type protein, GTPase domain Xfasm12_0062 PF00419 Fimbrial protein Xfasm12_0063 PF00577 Outer membrane usher protein Xfasm12_0063 PF13954 PapC N-terminal domain Xfasm12_0063 PF13953 PapC C-terminal domain Xfasm12_0064 PF02753 Pili assembly chaperone PapD, C-terminal domain Xfasm12_0064 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Xfasm12_0065 PF16970 Type-1 fimbrial protein, A Xfasm12_0067 PF02464 Competence-damaged protein Xfasm12_0068 PF00083 Sugar (and other) transporter Xfasm12_0069 PF16360 GTP-binding GTPase Middle Region Xfasm12_0069 PF13167 GTP-binding GTPase N-terminal Xfasm12_0069 PF01926 50S ribosome-binding GTPase Xfasm12_0070 PF17209 Hfq protein Xfasm12_0072 PF00809 Pterin binding enzyme Xfasm12_0074 PF06480 FtsH Extracellular Xfasm12_0074 PF17862 AAA+ lid domain Xfasm12_0074 PF01434 Peptidase family M41 Xfasm12_0074 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_0075 PF01728 FtsJ-like methyltransferase Xfasm12_0076 PF01985 CRS1 / YhbY (CRM) domain Xfasm12_0079 PF00920 Dehydratase family Xfasm12_0084 PF03279 Bacterial lipid A biosynthesis acyltransferase Xfasm12_0085 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Xfasm12_0087 PF00886 Ribosomal protein S16 Xfasm12_0088 PF01782 RimM N-terminal domain Xfasm12_0088 PF05239 PRC-barrel domain Xfasm12_0089 PF01746 tRNA (Guanine-1)-methyltransferase Xfasm12_0090 PF01245 Ribosomal protein L19 Xfasm12_0091 PF00557 Metallopeptidase family M24 Xfasm12_0093 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Xfasm12_0093 PF14602 Hexapeptide repeat of succinyl-transferase Xfasm12_0093 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0094 PF03960 ArsC family Xfasm12_0095 PF07687 Peptidase dimerisation domain Xfasm12_0095 PF01546 Peptidase family M20/M25/M40 Xfasm12_0096 PF13537 Glutamine amidotransferase domain Xfasm12_0096 PF00733 Asparagine synthase Xfasm12_0098 PF03060 Nitronate monooxygenase Xfasm12_0099 PF01726 LexA DNA binding domain Xfasm12_0099 PF00717 Peptidase S24-like Xfasm12_0100 PF00154 recA bacterial DNA recombination protein Xfasm12_0101 PF02272 DHHA1 domain Xfasm12_0101 PF01411 tRNA synthetases class II (A) Xfasm12_0101 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Xfasm12_0102 PF02599 Global regulator protein family Xfasm12_0104 PF01432 Peptidase family M3 Xfasm12_0108 PF07731 Multicopper oxidase Xfasm12_0108 PF07732 Multicopper oxidase Xfasm12_0108 PF00394 Multicopper oxidase Xfasm12_0109 PF05275 Copper resistance protein B precursor (CopB) Xfasm12_0110 PF10458 Valyl tRNA synthetase tRNA binding arm Xfasm12_0110 PF08264 Anticodon-binding domain of tRNA Xfasm12_0110 PF00133 tRNA synthetases class I (I, L, M and V) Xfasm12_0114 PF00883 Cytosol aminopeptidase family, catalytic domain Xfasm12_0114 PF02789 Cytosol aminopeptidase family, N-terminal domain Xfasm12_0118 PF01380 SIS domain Xfasm12_0120 PF17284 Spermidine synthase tetramerisation domain Xfasm12_0121 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Xfasm12_0121 PF17944 Arginine decarboxylase C-terminal helical extension Xfasm12_0121 PF17810 Arginine decarboxylase helical bundle domain Xfasm12_0122 PF00106 short chain dehydrogenase Xfasm12_0124 PF00750 tRNA synthetases class I (R) Xfasm12_0124 PF05746 DALR anticodon binding domain Xfasm12_0124 PF03485 Arginyl tRNA synthetase N terminal domain Xfasm12_0125 PF04002 RadC-like JAB domain Xfasm12_0126 PF02441 Flavoprotein Xfasm12_0126 PF04127 DNA / pantothenate metabolism flavoprotein Xfasm12_0127 PF00692 dUTPase Xfasm12_0128 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xfasm12_0128 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xfasm12_0128 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xfasm12_0128 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xfasm12_0130 PF00156 Phosphoribosyl transferase domain Xfasm12_0139 PF07690 Major Facilitator Superfamily Xfasm12_0140 PF03702 Anhydro-N-acetylmuramic acid kinase Xfasm12_0141 PF04225 Opacity-associated protein A LysM-like domain Xfasm12_0141 PF01551 Peptidase family M23 Xfasm12_0142 PF00579 tRNA synthetases class I (W and Y) Xfasm12_0143 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Xfasm12_0143 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Xfasm12_0144 PF01578 Cytochrome C assembly protein Xfasm12_0147 PF00009 Elongation factor Tu GTP binding domain Xfasm12_0147 PF16658 Class II release factor RF3, C-terminal domain Xfasm12_0148 PF03006 Haemolysin-III related Xfasm12_0149 PF00535 Glycosyl transferase family 2 Xfasm12_0150 PF01026 TatD related DNase Xfasm12_0154 PF01597 Glycine cleavage H-protein Xfasm12_0155 PF08669 Glycine cleavage T-protein C-terminal barrel domain Xfasm12_0155 PF01571 Aminomethyltransferase folate-binding domain Xfasm12_0157 PF16200 C-terminal region of band_7 Xfasm12_0157 PF01145 SPFH domain / Band 7 family Xfasm12_0158 PF03819 MazG nucleotide pyrophosphohydrolase domain Xfasm12_0159 PF00459 Inositol monophosphatase family Xfasm12_0160 PF00293 NUDIX domain Xfasm12_0161 PF00202 Aminotransferase class-III Xfasm12_0162 PF04452 RNA methyltransferase Xfasm12_0163 PF00270 DEAD/DEAH box helicase Xfasm12_0163 PF00271 Helicase conserved C-terminal domain Xfasm12_0164 PF01242 6-pyruvoyl tetrahydropterin synthase Xfasm12_0173 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Xfasm12_0174 PF07733 Bacterial DNA polymerase III alpha NTPase domain Xfasm12_0174 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Xfasm12_0174 PF02811 PHP domain Xfasm12_0174 PF01336 OB-fold nucleic acid binding domain Xfasm12_0174 PF14579 Helix-hairpin-helix motif Xfasm12_0175 PF01259 SAICAR synthetase Xfasm12_0176 PF00684 DnaJ central domain Xfasm12_0176 PF00226 DnaJ domain Xfasm12_0176 PF01556 DnaJ C terminal domain Xfasm12_0177 PF00834 Ribulose-phosphate 3 epimerase family Xfasm12_0179 PF04715 Anthranilate synthase component I, N terminal region Xfasm12_0179 PF00425 chorismate binding enzyme Xfasm12_0180 PF00117 Glutamine amidotransferase class-I Xfasm12_0181 PF00591 Glycosyl transferase family, a/b domain Xfasm12_0181 PF02885 Glycosyl transferase family, helical bundle domain Xfasm12_0182 PF00218 Indole-3-glycerol phosphate synthase Xfasm12_0188 PF01321 Creatinase/Prolidase N-terminal domain Xfasm12_0188 PF00557 Metallopeptidase family M24 Xfasm12_0191 PF01702 Queuine tRNA-ribosyltransferase Xfasm12_0192 PF02699 Preprotein translocase subunit Xfasm12_0193 PF07549 SecD/SecF GG Motif Xfasm12_0193 PF13721 SecD export protein N-terminal TM region Xfasm12_0193 PF02355 Protein export membrane protein Xfasm12_0194 PF02355 Protein export membrane protein Xfasm12_0194 PF07549 SecD/SecF GG Motif Xfasm12_0195 PF12627 Probable RNA and SrmB- binding site of polymerase A Xfasm12_0195 PF12626 Polymerase A arginine-rich C-terminus Xfasm12_0195 PF01743 Poly A polymerase head domain Xfasm12_0196 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Xfasm12_0197 PF02548 Ketopantoate hydroxymethyltransferase Xfasm12_0198 PF02569 Pantoate-beta-alanine ligase Xfasm12_0199 PF02261 Aspartate decarboxylase Xfasm12_0200 PF00342 Phosphoglucose isomerase Xfasm12_0201 PF17384 RimP C-terminal SH3 domain Xfasm12_0201 PF02576 RimP N-terminal domain Xfasm12_0202 PF00575 S1 RNA binding domain Xfasm12_0202 PF08529 NusA N-terminal domain Xfasm12_0202 PF13184 NusA-like KH domain Xfasm12_0203 PF00009 Elongation factor Tu GTP binding domain Xfasm12_0203 PF04760 Translation initiation factor IF-2, N-terminal region Xfasm12_0203 PF08364 Bacterial translation initiation factor IF-2 associated region Xfasm12_0203 PF11987 Translation-initiation factor 2 Xfasm12_0204 PF02033 Ribosome-binding factor A Xfasm12_0205 PF01509 TruB family pseudouridylate synthase (N terminal domain) Xfasm12_0205 PF16198 tRNA pseudouridylate synthase B C-terminal domain Xfasm12_0205 PF09157 Pseudouridine synthase II TruB, C-terminal Xfasm12_0206 PF00312 Ribosomal protein S15 Xfasm12_0207 PF00575 S1 RNA binding domain Xfasm12_0207 PF03725 3' exoribonuclease family, domain 2 Xfasm12_0207 PF01138 3' exoribonuclease family, domain 1 Xfasm12_0207 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Xfasm12_0207 PF00013 KH domain Xfasm12_0208 PF01638 HxlR-like helix-turn-helix Xfasm12_0209 PF05368 NmrA-like family Xfasm12_0220 PF00270 DEAD/DEAH box helicase Xfasm12_0220 PF03880 DbpA RNA binding domain Xfasm12_0220 PF00271 Helicase conserved C-terminal domain Xfasm12_0222 PF01012 Electron transfer flavoprotein domain Xfasm12_0222 PF00766 Electron transfer flavoprotein FAD-binding domain Xfasm12_0223 PF01012 Electron transfer flavoprotein domain Xfasm12_0224 PF16363 GDP-mannose 4,6 dehydratase Xfasm12_0225 PF00483 Nucleotidyl transferase Xfasm12_0226 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Xfasm12_0227 PF04321 RmlD substrate binding domain Xfasm12_0228 PF00483 Nucleotidyl transferase Xfasm12_0228 PF01050 Mannose-6-phosphate isomerase Xfasm12_0229 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xfasm12_0229 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xfasm12_0229 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xfasm12_0229 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xfasm12_0234 PF03797 Autotransporter beta-domain Xfasm12_0234 PF00082 Subtilase family Xfasm12_0234 PF12951 Passenger-associated-transport-repeat Xfasm12_0235 PF06779 Uncharacterised MFS-type transporter YbfB Xfasm12_0239 PF00365 Phosphofructokinase Xfasm12_0241 PF08245 Mur ligase middle domain Xfasm12_0241 PF02875 Mur ligase family, glutamate ligase domain Xfasm12_0241 PF01225 Mur ligase family, catalytic domain Xfasm12_0242 PF01569 PAP2 superfamily Xfasm12_0245 PF02789 Cytosol aminopeptidase family, N-terminal domain Xfasm12_0245 PF00883 Cytosol aminopeptidase family, catalytic domain Xfasm12_0246 PF01594 AI-2E family transporter Xfasm12_0250 PF00595 PDZ domain Xfasm12_0251 PF01370 NAD dependent epimerase/dehydratase family Xfasm12_0251 PF08338 Domain of unknown function (DUF1731) Xfasm12_0252 PF00501 AMP-binding enzyme Xfasm12_0252 PF13193 AMP-binding enzyme C-terminal domain Xfasm12_0254 PF00694 Aconitase C-terminal domain Xfasm12_0254 PF00330 Aconitase family (aconitate hydratase) Xfasm12_0257 PF11791 Aconitate B N-terminal domain Xfasm12_0257 PF06434 Aconitate hydratase 2 N-terminus Xfasm12_0257 PF00330 Aconitase family (aconitate hydratase) Xfasm12_0265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xfasm12_0267 PF00121 Triosephosphate isomerase Xfasm12_0269 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Xfasm12_0270 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Xfasm12_0271 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Xfasm12_0272 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Xfasm12_0274 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Xfasm12_0274 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Xfasm12_0274 PF10531 SLBB domain Xfasm12_0275 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Xfasm12_0275 PF00384 Molybdopterin oxidoreductase Xfasm12_0275 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Xfasm12_0276 PF00146 NADH dehydrogenase Xfasm12_0277 PF12838 4Fe-4S dicluster domain Xfasm12_0278 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Xfasm12_0279 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Xfasm12_0280 PF00361 Proton-conducting membrane transporter Xfasm12_0280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Xfasm12_0281 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Xfasm12_0281 PF00361 Proton-conducting membrane transporter Xfasm12_0282 PF00361 Proton-conducting membrane transporter Xfasm12_0283 PF00106 short chain dehydrogenase Xfasm12_0284 PF03600 Citrate transporter Xfasm12_0286 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_0286 PF00072 Response regulator receiver domain Xfasm12_0287 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_0287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0287 PF08521 Two-component sensor kinase N-terminal Xfasm12_0290 PF00196 Bacterial regulatory proteins, luxR family Xfasm12_0290 PF00072 Response regulator receiver domain Xfasm12_0291 PF00072 Response regulator receiver domain Xfasm12_0291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0291 PF09456 RcsC Alpha-Beta-Loop (ABL) Xfasm12_0291 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_0294 PF00375 Sodium:dicarboxylate symporter family Xfasm12_0295 PF03949 Malic enzyme, NAD binding domain Xfasm12_0295 PF00390 Malic enzyme, N-terminal domain Xfasm12_0295 PF01515 Phosphate acetyl/butaryl transferase Xfasm12_0296 PF00183 Hsp90 protein Xfasm12_0296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0298 PF01467 Cytidylyltransferase-like Xfasm12_0300 PF00037 4Fe-4S binding domain Xfasm12_0303 PF00990 Diguanylate cyclase, GGDEF domain Xfasm12_0303 PF05230 MASE2 domain Xfasm12_0304 PF01551 Peptidase family M23 Xfasm12_0304 PF08460 Bacterial SH3 domain Xfasm12_0305 PF01979 Amidohydrolase family Xfasm12_0306 PF01809 Putative membrane protein insertion efficiency factor Xfasm12_0307 PF01258 Prokaryotic dksA/traR C4-type zinc finger Xfasm12_0309 PF05977 Transmembrane secretion effector Xfasm12_0310 PF02657 Fe-S metabolism associated domain Xfasm12_0311 PF09190 DALR domain Xfasm12_0311 PF01406 tRNA synthetases class I (C) catalytic domain Xfasm12_0314 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Xfasm12_0314 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Xfasm12_0315 PF00764 Arginosuccinate synthase Xfasm12_0316 PF07687 Peptidase dimerisation domain Xfasm12_0316 PF01546 Peptidase family M20/M25/M40 Xfasm12_0317 PF00696 Amino acid kinase family Xfasm12_0317 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase Xfasm12_0318 PF01118 Semialdehyde dehydrogenase, NAD binding domain Xfasm12_0319 PF00206 Lyase Xfasm12_0320 PF01472 PUA domain Xfasm12_0320 PF00696 Amino acid kinase family Xfasm12_0321 PF00171 Aldehyde dehydrogenase family Xfasm12_0327 PF06594 Haemolysin-type calcium binding protein related domain Xfasm12_0327 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Xfasm12_0328 PF14437 MafB19-like deaminase Xfasm12_0329 PF01325 Iron dependent repressor, N-terminal DNA binding domain Xfasm12_0329 PF02742 Iron dependent repressor, metal binding and dimerisation domain Xfasm12_0331 PF01566 Natural resistance-associated macrophage protein Xfasm12_0334 PF04376 Arginine-tRNA-protein transferase, N terminus Xfasm12_0334 PF04377 Arginine-tRNA-protein transferase, C terminus Xfasm12_0340 PF00082 Subtilase family Xfasm12_0340 PF03797 Autotransporter beta-domain Xfasm12_0340 PF12951 Passenger-associated-transport-repeat Xfasm12_0345 PF01553 Acyltransferase Xfasm12_0349 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Xfasm12_0349 PF05221 S-adenosyl-L-homocysteine hydrolase Xfasm12_0352 PF01351 Ribonuclease HII Xfasm12_0353 PF02684 Lipid-A-disaccharide synthetase Xfasm12_0354 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Xfasm12_0354 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0355 PF07977 FabA-like domain Xfasm12_0356 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0356 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Xfasm12_0357 PF07244 Surface antigen variable number repeat Xfasm12_0357 PF01103 Surface antigen Xfasm12_0358 PF02163 Peptidase family M50 Xfasm12_0358 PF17820 PDZ domain Xfasm12_0359 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Xfasm12_0359 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Xfasm12_0359 PF13288 DXP reductoisomerase C-terminal domain Xfasm12_0361 PF01255 Putative undecaprenyl diphosphate synthase Xfasm12_0362 PF01765 Ribosome recycling factor Xfasm12_0368 PF00696 Amino acid kinase family Xfasm12_0370 PF01081 KDPG and KHG aldolase Xfasm12_0371 PF00920 Dehydratase family Xfasm12_0372 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Xfasm12_0373 PF02685 Glucokinase Xfasm12_0374 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Xfasm12_0374 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Xfasm12_0375 PF00005 ABC transporter Xfasm12_0375 PF17912 MalK OB fold domain Xfasm12_0376 PF01571 Aminomethyltransferase folate-binding domain Xfasm12_0378 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Xfasm12_0379 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Xfasm12_0380 PF02910 Fumarate reductase flavoprotein C-term Xfasm12_0380 PF00890 FAD binding domain Xfasm12_0381 PF13085 2Fe-2S iron-sulfur cluster binding domain Xfasm12_0382 PF03937 Flavinator of succinate dehydrogenase Xfasm12_0384 PF12704 MacB-like periplasmic core domain Xfasm12_0384 PF02687 FtsX-like permease family Xfasm12_0385 PF00005 ABC transporter Xfasm12_0386 PF03772 Competence protein Xfasm12_0386 PF00753 Metallo-beta-lactamase superfamily Xfasm12_0387 PF01618 MotA/TolQ/ExbB proton channel family Xfasm12_0389 PF00664 ABC transporter transmembrane region Xfasm12_0389 PF00005 ABC transporter Xfasm12_0390 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Xfasm12_0397 PF17482 Phage tail sheath C-terminal domain Xfasm12_0397 PF04984 Phage tail sheath protein subtilisin-like domain Xfasm12_0403 PF01381 Helix-turn-helix Xfasm12_0405 PF01381 Helix-turn-helix Xfasm12_0419 PF00959 Phage lysozyme Xfasm12_0420 PF01555 DNA methylase Xfasm12_0433 PF04264 YceI-like domain Xfasm12_0434 PF13091 PLD-like domain Xfasm12_0439 PF03358 NADPH-dependent FMN reductase Xfasm12_0442 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Xfasm12_0442 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Xfasm12_0448 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Xfasm12_0448 PF00476 DNA polymerase family A Xfasm12_0448 PF01612 3'-5' exonuclease Xfasm12_0448 PF01367 5'-3' exonuclease, C-terminal SAM fold Xfasm12_0450 PF01113 Dihydrodipicolinate reductase, N-terminus Xfasm12_0450 PF05173 Dihydrodipicolinate reductase, C-terminus Xfasm12_0451 PF00117 Glutamine amidotransferase class-I Xfasm12_0451 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Xfasm12_0452 PF02142 MGS-like domain Xfasm12_0452 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Xfasm12_0452 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Xfasm12_0453 PF01272 Transcription elongation factor, GreA/GreB, C-term Xfasm12_0453 PF03449 Transcription elongation factor, N-terminal Xfasm12_0455 PF17768 RecJ OB domain Xfasm12_0455 PF02272 DHHA1 domain Xfasm12_0455 PF01368 DHH family Xfasm12_0456 PF00472 RF-1 domain Xfasm12_0456 PF03462 PCRF domain Xfasm12_0457 PF00152 tRNA synthetases class II (D, K and N) Xfasm12_0457 PF01336 OB-fold nucleic acid binding domain Xfasm12_0458 PF00072 Response regulator receiver domain Xfasm12_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0459 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_0459 PF01627 Hpt domain Xfasm12_0459 PF00072 Response regulator receiver domain Xfasm12_0460 PF00378 Enoyl-CoA hydratase/isomerase Xfasm12_0461 PF00696 Amino acid kinase family Xfasm12_0461 PF01842 ACT domain Xfasm12_0463 PF08245 Mur ligase middle domain Xfasm12_0465 PF00293 NUDIX domain Xfasm12_0466 PF02219 Methylenetetrahydrofolate reductase Xfasm12_0469 PF02545 Maf-like protein Xfasm12_0470 PF10150 Ribonuclease E/G family Xfasm12_0470 PF00575 S1 RNA binding domain Xfasm12_0472 PF01523 Putative modulator of DNA gyrase Xfasm12_0473 PF04751 Protein of unknown function (DUF615) Xfasm12_0474 PF01523 Putative modulator of DNA gyrase Xfasm12_0475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xfasm12_0475 PF03466 LysR substrate binding domain Xfasm12_0478 PF08240 Alcohol dehydrogenase GroES-like domain Xfasm12_0478 PF00107 Zinc-binding dehydrogenase Xfasm12_0482 PF12804 MobA-like NTP transferase domain Xfasm12_0482 PF14602 Hexapeptide repeat of succinyl-transferase Xfasm12_0482 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0484 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Xfasm12_0484 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Xfasm12_0485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xfasm12_0485 PF02874 ATP synthase alpha/beta family, beta-barrel domain Xfasm12_0486 PF00231 ATP synthase Xfasm12_0487 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Xfasm12_0487 PF00306 ATP synthase alpha/beta chain, C terminal domain Xfasm12_0487 PF02874 ATP synthase alpha/beta family, beta-barrel domain Xfasm12_0488 PF00213 ATP synthase delta (OSCP) subunit Xfasm12_0489 PF00430 ATP synthase B/B' CF(0) Xfasm12_0490 PF00137 ATP synthase subunit C Xfasm12_0491 PF00119 ATP synthase A chain Xfasm12_0493 PF00338 Ribosomal protein S10p/S20e Xfasm12_0494 PF00297 Ribosomal protein L3 Xfasm12_0495 PF00573 Ribosomal protein L4/L1 family Xfasm12_0496 PF00276 Ribosomal protein L23 Xfasm12_0497 PF00181 Ribosomal Proteins L2, RNA binding domain Xfasm12_0497 PF03947 Ribosomal Proteins L2, C-terminal domain Xfasm12_0498 PF00203 Ribosomal protein S19 Xfasm12_0499 PF00237 Ribosomal protein L22p/L17e Xfasm12_0500 PF00189 Ribosomal protein S3, C-terminal domain Xfasm12_0500 PF07650 KH domain Xfasm12_0501 PF00252 Ribosomal protein L16p/L10e Xfasm12_0502 PF00831 Ribosomal L29 protein Xfasm12_0503 PF00366 Ribosomal protein S17 Xfasm12_0504 PF00238 Ribosomal protein L14p/L23e Xfasm12_0505 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Xfasm12_0505 PF00467 KOW motif Xfasm12_0506 PF00281 Ribosomal protein L5 Xfasm12_0506 PF00673 ribosomal L5P family C-terminus Xfasm12_0507 PF00253 Ribosomal protein S14p/S29e Xfasm12_0508 PF00410 Ribosomal protein S8 Xfasm12_0509 PF00347 Ribosomal protein L6 Xfasm12_0510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Xfasm12_0511 PF03719 Ribosomal protein S5, C-terminal domain Xfasm12_0511 PF00333 Ribosomal protein S5, N-terminal domain Xfasm12_0512 PF00327 Ribosomal protein L30p/L7e Xfasm12_0513 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Xfasm12_0514 PF00344 SecY translocase Xfasm12_0515 PF00416 Ribosomal protein S13/S18 Xfasm12_0516 PF00411 Ribosomal protein S11 Xfasm12_0517 PF01479 S4 domain Xfasm12_0517 PF00163 Ribosomal protein S4/S9 N-terminal domain Xfasm12_0518 PF01000 RNA polymerase Rpb3/RpoA insert domain Xfasm12_0518 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Xfasm12_0518 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Xfasm12_0519 PF01196 Ribosomal protein L17 Xfasm12_0520 PF04380 Membrane fusogenic activity Xfasm12_0521 PF01078 Magnesium chelatase, subunit ChlI Xfasm12_0521 PF13335 Magnesium chelatase, subunit ChlI C-terminal Xfasm12_0524 PF03280 Proteobacterial lipase chaperone protein Xfasm12_0525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Xfasm12_0525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Xfasm12_0525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Xfasm12_0528 PF05698 Bacterial trigger factor protein (TF) C-terminus Xfasm12_0528 PF05697 Bacterial trigger factor protein (TF) Xfasm12_0529 PF00574 Clp protease Xfasm12_0530 PF10431 C-terminal, D2-small domain, of ClpB protein Xfasm12_0530 PF06689 ClpX C4-type zinc finger Xfasm12_0530 PF07724 AAA domain (Cdc48 subfamily) Xfasm12_0531 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_0531 PF05362 Lon protease (S16) C-terminal proteolytic domain Xfasm12_0531 PF02190 ATP-dependent protease La (LON) substrate-binding domain Xfasm12_0532 PF00216 Bacterial DNA-binding protein Xfasm12_0537 PF00317 Ribonucleotide reductase, all-alpha domain Xfasm12_0537 PF02867 Ribonucleotide reductase, barrel domain Xfasm12_0537 PF03477 ATP cone domain Xfasm12_0538 PF00268 Ribonucleotide reductase, small chain Xfasm12_0541 PF00849 RNA pseudouridylate synthase Xfasm12_0541 PF01479 S4 domain Xfasm12_0542 PF13419 Haloacid dehalogenase-like hydrolase Xfasm12_0546 PF00830 Ribosomal L28 family Xfasm12_0547 PF00471 Ribosomal protein L33 Xfasm12_0548 PF13091 PLD-like domain Xfasm12_0548 PF13396 Phospholipase_D-nuclease N-terminal Xfasm12_0549 PF00043 Glutathione S-transferase, C-terminal domain Xfasm12_0549 PF02798 Glutathione S-transferase, N-terminal domain Xfasm12_0550 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Xfasm12_0550 PF00056 lactate/malate dehydrogenase, NAD binding domain Xfasm12_0551 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Xfasm12_0554 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xfasm12_0554 PF00529 HlyD membrane-fusion protein of T1SS Xfasm12_0558 PF00005 ABC transporter Xfasm12_0558 PF00664 ABC transporter transmembrane region Xfasm12_0558 PF03412 Peptidase C39 family Xfasm12_0559 PF01061 ABC-2 type transporter Xfasm12_0560 PF00005 ABC transporter Xfasm12_0561 PF05567 Neisseria PilC beta-propeller domain Xfasm12_0565 PF00270 DEAD/DEAH box helicase Xfasm12_0565 PF08482 ATP-dependent helicase C-terminal Xfasm12_0565 PF00271 Helicase conserved C-terminal domain Xfasm12_0565 PF04408 Helicase associated domain (HA2) Xfasm12_0567 PF13185 GAF domain Xfasm12_0568 PF17243 POTRA domain TamA domain 1 Xfasm12_0568 PF01103 Surface antigen Xfasm12_0569 PF04357 TamB, inner membrane protein subunit of TAM complex Xfasm12_0580 PF00694 Aconitase C-terminal domain Xfasm12_0580 PF00330 Aconitase family (aconitate hydratase) Xfasm12_0582 PF04303 PrpF protein Xfasm12_0586 PF07703 Alpha-2-macroglobulin bait region domain Xfasm12_0586 PF17962 Bacterial macroglobulin domain 6 Xfasm12_0586 PF00207 Alpha-2-macroglobulin family Xfasm12_0586 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Xfasm12_0586 PF01835 MG2 domain Xfasm12_0586 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Xfasm12_0586 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Xfasm12_0586 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Xfasm12_0587 PF07859 alpha/beta hydrolase fold Xfasm12_0588 PF12833 Helix-turn-helix domain Xfasm12_0588 PF12852 Cupin Xfasm12_0591 PF00929 Exonuclease Xfasm12_0592 PF00924 Mechanosensitive ion channel Xfasm12_0592 PF05552 Conserved TM helix Xfasm12_0593 PF02896 PEP-utilising enzyme, TIM barrel domain Xfasm12_0593 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Xfasm12_0593 PF00391 PEP-utilising enzyme, mobile domain Xfasm12_0594 PF03618 Kinase/pyrophosphorylase Xfasm12_0598 PF00041 Fibronectin type III domain Xfasm12_0598 PF01341 Glycosyl hydrolases family 6 Xfasm12_0598 PF00553 Cellulose binding domain Xfasm12_0599 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Xfasm12_0599 PF04055 Radical SAM superfamily Xfasm12_0600 PF03099 Biotin/lipoate A/B protein ligase family Xfasm12_0601 PF04359 Protein of unknown function (DUF493) Xfasm12_0606 PF04286 Protein of unknown function (DUF445) Xfasm12_0608 PF00571 CBS domain Xfasm12_0608 PF01595 Cyclin M transmembrane N-terminal domain Xfasm12_0608 PF03471 Transporter associated domain Xfasm12_0612 PF00204 DNA gyrase B Xfasm12_0612 PF00986 DNA gyrase B subunit, carboxyl terminus Xfasm12_0612 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0612 PF01751 Toprim domain Xfasm12_0614 PF06418 CTP synthase N-terminus Xfasm12_0614 PF00117 Glutamine amidotransferase class-I Xfasm12_0615 PF00793 DAHP synthetase I family Xfasm12_0616 PF03952 Enolase, N-terminal domain Xfasm12_0616 PF00113 Enolase, C-terminal TIM barrel domain Xfasm12_0617 PF04977 Septum formation initiator Xfasm12_0618 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Xfasm12_0619 PF02542 YgbB family Xfasm12_0620 PF01713 Smr domain Xfasm12_0626 PF02470 MlaD protein Xfasm12_0626 PF03886 ABC-type transport auxiliary lipoprotein component Xfasm12_0627 PF00005 ABC transporter Xfasm12_0628 PF02405 Permease MlaE Xfasm12_0633 PF00436 Single-strand binding protein family Xfasm12_0638 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_0658 PF00239 Resolvase, N terminal domain Xfasm12_0659 PF12323 Helix-turn-helix domain Xfasm12_0659 PF01385 Probable transposase Xfasm12_0659 PF07282 Putative transposase DNA-binding domain Xfasm12_0669 PF04085 rod shape-determining protein MreC Xfasm12_0670 PF04093 rod shape-determining protein MreD Xfasm12_0671 PF00905 Penicillin binding protein transpeptidase domain Xfasm12_0671 PF03717 Penicillin-binding Protein dimerisation domain Xfasm12_0672 PF01098 Cell cycle protein Xfasm12_0673 PF02547 Queuosine biosynthesis protein Xfasm12_0674 PF02824 TGS domain Xfasm12_0674 PF04607 Region found in RelA / SpoT proteins Xfasm12_0674 PF13291 ACT domain Xfasm12_0678 PF03776 Septum formation topological specificity factor MinE Xfasm12_0679 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Xfasm12_0680 PF03775 Septum formation inhibitor MinC, C-terminal domain Xfasm12_0680 PF05209 Septum formation inhibitor MinC, N-terminal domain Xfasm12_0684 PF00730 HhH-GPD superfamily base excision DNA repair protein Xfasm12_0687 PF04264 YceI-like domain Xfasm12_0688 PF01627 Hpt domain Xfasm12_0688 PF00072 Response regulator receiver domain Xfasm12_0688 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_0688 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_0689 PF01208 Uroporphyrinogen decarboxylase (URO-D) Xfasm12_0691 PF01761 3-dehydroquinate synthase Xfasm12_0692 PF01202 Shikimate kinase Xfasm12_0693 PF01243 Pyridoxamine 5'-phosphate oxidase Xfasm12_0693 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Xfasm12_0694 PF00749 tRNA synthetases class I (E and Q), catalytic domain Xfasm12_0694 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Xfasm12_0696 PF03932 CutC family Xfasm12_0699 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_0700 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_0701 PF12857 TOBE-like domain Xfasm12_0701 PF00005 ABC transporter Xfasm12_0703 PF04546 Sigma-70, non-essential region Xfasm12_0703 PF04545 Sigma-70, region 4 Xfasm12_0703 PF00140 Sigma-70 factor, region 1.2 Xfasm12_0703 PF03979 Sigma-70 factor, region 1.1 Xfasm12_0703 PF04542 Sigma-70 region 2 Xfasm12_0703 PF04539 Sigma-70 region 3 Xfasm12_0705 PF03989 DNA gyrase C-terminal domain, beta-propeller Xfasm12_0705 PF00521 DNA gyrase/topoisomerase IV, subunit A Xfasm12_0706 PF01047 MarR family Xfasm12_0709 PF12697 Alpha/beta hydrolase family Xfasm12_0710 PF00155 Aminotransferase class I and II Xfasm12_0713 PF01040 UbiA prenyltransferase family Xfasm12_0714 PF00753 Metallo-beta-lactamase superfamily Xfasm12_0715 PF01966 HD domain Xfasm12_0715 PF01743 Poly A polymerase head domain Xfasm12_0715 PF12627 Probable RNA and SrmB- binding site of polymerase A Xfasm12_0716 PF01464 Transglycosylase SLT domain Xfasm12_0716 PF14718 Soluble lytic murein transglycosylase L domain Xfasm12_0718 PF02666 Phosphatidylserine decarboxylase Xfasm12_0719 PF02630 SCO1/SenC Xfasm12_0721 PF05175 Methyltransferase small domain Xfasm12_0722 PF01264 Chorismate synthase Xfasm12_0724 PF02774 Semialdehyde dehydrogenase, dimerisation domain Xfasm12_0724 PF01118 Semialdehyde dehydrogenase, NAD binding domain Xfasm12_0726 PF01416 tRNA pseudouridine synthase Xfasm12_0727 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Xfasm12_0728 PF00291 Pyridoxal-phosphate dependent enzyme Xfasm12_0729 PF00290 Tryptophan synthase alpha chain Xfasm12_0731 PF18073 Rubredoxin metal binding domain Xfasm12_0732 PF00296 Luciferase-like monooxygenase Xfasm12_0734 PF09382 RQC domain Xfasm12_0734 PF00270 DEAD/DEAH box helicase Xfasm12_0734 PF00570 HRDC domain Xfasm12_0734 PF00271 Helicase conserved C-terminal domain Xfasm12_0734 PF16124 RecQ zinc-binding Xfasm12_0735 PF00210 Ferritin-like domain Xfasm12_0736 PF00271 Helicase conserved C-terminal domain Xfasm12_0736 PF04408 Helicase associated domain (HA2) Xfasm12_0736 PF11898 Domain of unknown function (DUF3418) Xfasm12_0736 PF00270 DEAD/DEAH box helicase Xfasm12_0736 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Xfasm12_0737 PF02347 Glycine cleavage system P-protein Xfasm12_0738 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Xfasm12_0739 PF00510 Cytochrome c oxidase subunit III Xfasm12_0740 PF00115 Cytochrome C and Quinol oxidase polypeptide I Xfasm12_0741 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Xfasm12_0741 PF06481 COX Aromatic Rich Motif Xfasm12_0742 PF00348 Polyprenyl synthetase Xfasm12_0743 PF00436 Single-strand binding protein family Xfasm12_0747 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xfasm12_0750 PF00391 PEP-utilising enzyme, mobile domain Xfasm12_0750 PF02896 PEP-utilising enzyme, TIM barrel domain Xfasm12_0750 PF05524 PEP-utilising enzyme, N-terminal Xfasm12_0751 PF00381 PTS HPr component phosphorylation site Xfasm12_0753 PF03668 P-loop ATPase protein family Xfasm12_0754 PF07475 HPr Serine kinase C-terminal domain Xfasm12_0754 PF02603 HPr Serine kinase N terminus Xfasm12_0755 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Xfasm12_0756 PF04552 Sigma-54, DNA binding domain Xfasm12_0756 PF00309 Sigma-54 factor, Activator interacting domain (AID) Xfasm12_0756 PF04963 Sigma-54 factor, core binding domain Xfasm12_0757 PF00005 ABC transporter Xfasm12_0757 PF12399 Branched-chain amino acid ATP-binding cassette transporter Xfasm12_0761 PF00571 CBS domain Xfasm12_0761 PF01380 SIS domain Xfasm12_0762 PF01722 BolA-like protein Xfasm12_0763 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Xfasm12_0770 PF02769 AIR synthase related protein, C-terminal domain Xfasm12_0770 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Xfasm12_0770 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Xfasm12_0771 PF10411 Disulfide bond isomerase protein N-terminus Xfasm12_0771 PF13098 Thioredoxin-like domain Xfasm12_0772 PF00589 Phage integrase family Xfasm12_0772 PF02899 Phage integrase, N-terminal SAM-like domain Xfasm12_0773 PF00520 Ion transport protein Xfasm12_0773 PF00027 Cyclic nucleotide-binding domain Xfasm12_0774 PF00202 Aminotransferase class-III Xfasm12_0775 PF04107 Glutamate-cysteine ligase family 2(GCS2) Xfasm12_0776 PF01926 50S ribosome-binding GTPase Xfasm12_0779 PF01323 DSBA-like thioredoxin domain Xfasm12_0780 PF01323 DSBA-like thioredoxin domain Xfasm12_0782 PF04356 Protein of unknown function (DUF489) Xfasm12_0784 PF00293 NUDIX domain Xfasm12_0785 PF02617 ATP-dependent Clp protease adaptor protein ClpS Xfasm12_0786 PF10431 C-terminal, D2-small domain, of ClpB protein Xfasm12_0786 PF02861 Clp amino terminal domain, pathogenicity island component Xfasm12_0786 PF17871 AAA lid domain Xfasm12_0786 PF07724 AAA domain (Cdc48 subfamily) Xfasm12_0786 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_0788 PF01176 Translation initiation factor 1A / IF-1 Xfasm12_0789 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Xfasm12_0791 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xfasm12_0793 PF17854 FtsK alpha domain Xfasm12_0793 PF01580 FtsK/SpoIIIE family Xfasm12_0793 PF09397 Ftsk gamma domain Xfasm12_0793 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Xfasm12_0795 PF03548 Outer membrane lipoprotein carrier protein LolA Xfasm12_0796 PF16193 AAA C-terminal domain Xfasm12_0796 PF12002 MgsA AAA+ ATPase C terminal Xfasm12_0796 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_0797 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Xfasm12_0799 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Xfasm12_0803 PF02685 Glucokinase Xfasm12_0805 PF07690 Major Facilitator Superfamily Xfasm12_0806 PF00356 Bacterial regulatory proteins, lacI family Xfasm12_0807 PF01380 SIS domain Xfasm12_0808 PF01979 Amidohydrolase family Xfasm12_0809 PF17848 Acetyl-coA carboxylase zinc finger domain Xfasm12_0809 PF01039 Carboxyl transferase domain Xfasm12_0810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Xfasm12_0810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Xfasm12_0810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Xfasm12_0810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Xfasm12_0811 PF01522 Polysaccharide deacetylase Xfasm12_0812 PF13439 Glycosyltransferase Family 4 Xfasm12_0812 PF00534 Glycosyl transferases group 1 Xfasm12_0814 PF00355 Rieske [2Fe-2S] domain Xfasm12_0815 PF00266 Aminotransferase class-V Xfasm12_0816 PF01458 Uncharacterized protein family (UPF0051) Xfasm12_0817 PF00005 ABC transporter Xfasm12_0818 PF01458 Uncharacterized protein family (UPF0051) Xfasm12_0819 PF02082 Transcriptional regulator Xfasm12_0821 PF00326 Prolyl oligopeptidase family Xfasm12_0821 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Xfasm12_0823 PF01678 Diaminopimelate epimerase Xfasm12_0825 PF00589 Phage integrase family Xfasm12_0825 PF02899 Phage integrase, N-terminal SAM-like domain Xfasm12_0826 PF00227 Proteasome subunit Xfasm12_0827 PF10431 C-terminal, D2-small domain, of ClpB protein Xfasm12_0827 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_0827 PF07724 AAA domain (Cdc48 subfamily) Xfasm12_0829 PF01209 ubiE/COQ5 methyltransferase family Xfasm12_0830 PF11838 ERAP1-like C-terminal domain Xfasm12_0830 PF01433 Peptidase family M1 domain Xfasm12_0834 PF13369 Transglutaminase-like superfamily Xfasm12_0837 PF01507 Phosphoadenosine phosphosulfate reductase family Xfasm12_0838 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Xfasm12_0838 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Xfasm12_0839 PF00667 FAD binding domain Xfasm12_0839 PF00258 Flavodoxin Xfasm12_0839 PF00175 Oxidoreductase NAD-binding domain Xfasm12_0840 PF01507 Phosphoadenosine phosphosulfate reductase family Xfasm12_0841 PF00009 Elongation factor Tu GTP binding domain Xfasm12_0842 PF01192 RNA polymerase Rpb6 Xfasm12_0843 PF00625 Guanylate kinase Xfasm12_0844 PF08340 Domain of unknown function (DUF1732) Xfasm12_0844 PF03755 YicC-like family, N-terminal region Xfasm12_0845 PF01138 3' exoribonuclease family, domain 1 Xfasm12_0845 PF03725 3' exoribonuclease family, domain 2 Xfasm12_0846 PF01725 Ham1 family Xfasm12_0847 PF06969 HemN C-terminal domain Xfasm12_0847 PF04055 Radical SAM superfamily Xfasm12_0850 PF00561 alpha/beta hydrolase fold Xfasm12_0851 PF05175 Methyltransferase small domain Xfasm12_0851 PF17827 PrmC N-terminal domain Xfasm12_0855 PF13018 Extended Signal Peptide of Type V secretion system Xfasm12_0855 PF05658 Head domain of trimeric autotransporter adhesin Xfasm12_0855 PF05662 Coiled stalk of trimeric autotransporter adhesin Xfasm12_0855 PF03895 YadA-like membrane anchor domain Xfasm12_0856 PF00437 Type II/IV secretion system protein Xfasm12_0856 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Xfasm12_0857 PF00482 Type II secretion system (T2SS), protein F Xfasm12_0858 PF08334 Type II secretion system (T2SS), protein G Xfasm12_0859 PF12019 Type II transport protein GspH Xfasm12_0860 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_0862 PF03934 Type II secretion system (T2SS), protein K Xfasm12_0863 PF05137 Fimbrial assembly protein (PilN) Xfasm12_0864 PF10741 Type II secretion system (T2SS), protein M subtype b Xfasm12_0866 PF00263 Bacterial type II and III secretion system protein Xfasm12_0866 PF03958 Bacterial type II/III secretion system short domain Xfasm12_0868 PF05658 Head domain of trimeric autotransporter adhesin Xfasm12_0868 PF05662 Coiled stalk of trimeric autotransporter adhesin Xfasm12_0868 PF13018 Extended Signal Peptide of Type V secretion system Xfasm12_0868 PF03895 YadA-like membrane anchor domain Xfasm12_0869 PF00578 AhpC/TSA family Xfasm12_0869 PF10417 C-terminal domain of 1-Cys peroxiredoxin Xfasm12_0870 PF13192 Thioredoxin domain Xfasm12_0870 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xfasm12_0871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xfasm12_0871 PF03466 LysR substrate binding domain Xfasm12_0872 PF00814 Glycoprotease family Xfasm12_0873 PF01197 Ribosomal protein L31 Xfasm12_0874 PF00285 Citrate synthase, C-terminal domain Xfasm12_0875 PF00380 Ribosomal protein S9/S16 Xfasm12_0876 PF00572 Ribosomal protein L13 Xfasm12_0877 PF03232 Ubiquinone biosynthesis protein COQ7 Xfasm12_0878 PF02675 S-adenosylmethionine decarboxylase Xfasm12_0879 PF00325 Bacterial regulatory proteins, crp family Xfasm12_0879 PF00027 Cyclic nucleotide-binding domain Xfasm12_0884 PF00899 ThiF family Xfasm12_0886 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xfasm12_0886 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Xfasm12_0888 PF02817 e3 binding domain Xfasm12_0888 PF00364 Biotin-requiring enzyme Xfasm12_0888 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Xfasm12_0889 PF16078 2-oxoglutarate dehydrogenase N-terminus Xfasm12_0889 PF00676 Dehydrogenase E1 component Xfasm12_0889 PF16870 2-oxoglutarate dehydrogenase C-terminal Xfasm12_0889 PF02779 Transketolase, pyrimidine binding domain Xfasm12_0891 PF08007 Cupin superfamily protein Xfasm12_0892 PF08328 Adenylosuccinate lyase C-terminal Xfasm12_0892 PF00206 Lyase Xfasm12_0893 PF00206 Lyase Xfasm12_0893 PF10415 Fumarase C C-terminus Xfasm12_0896 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_0896 PF00114 Pilin (bacterial filament) Xfasm12_0912 PF00959 Phage lysozyme Xfasm12_0913 PF01555 DNA methylase Xfasm12_0921 PF01134 Glucose inhibited division protein A Xfasm12_0921 PF13932 GidA associated domain Xfasm12_0926 PF13649 Methyltransferase domain Xfasm12_0929 PF02649 Type I GTP cyclohydrolase folE2 Xfasm12_0930 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0931 PF00873 AcrB/AcrD/AcrF family Xfasm12_0932 PF00529 HlyD membrane-fusion protein of T1SS Xfasm12_0932 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xfasm12_0934 PF05088 Bacterial NAD-glutamate dehydrogenase Xfasm12_0935 PF01513 ATP-NAD kinase Xfasm12_0938 PF02796 Helix-turn-helix domain of resolvase Xfasm12_0938 PF00239 Resolvase, N terminal domain Xfasm12_0939 PF00440 Bacterial regulatory proteins, tetR family Xfasm12_0941 PF00873 AcrB/AcrD/AcrF family Xfasm12_0943 PF13362 Toprim domain Xfasm12_0943 PF08401 Domain of unknown function (DUF1738) Xfasm12_0943 PF18818 Metallopeptidase superfamily domain Xfasm12_0948 PF00239 Resolvase, N terminal domain Xfasm12_0949 PF00933 Glycosyl hydrolase family 3 N terminal domain Xfasm12_0949 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xfasm12_0951 PF08401 Domain of unknown function (DUF1738) Xfasm12_0951 PF13362 Toprim domain Xfasm12_0951 PF18818 Metallopeptidase superfamily domain Xfasm12_0952 PF12706 Beta-lactamase superfamily domain Xfasm12_0954 PF00929 Exonuclease Xfasm12_0954 PF08411 Exonuclease C-terminal Xfasm12_0957 PF00999 Sodium/hydrogen exchanger family Xfasm12_0960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Xfasm12_0962 PF01812 5-formyltetrahydrofolate cyclo-ligase family Xfasm12_0963 PF05164 Cell division protein ZapA Xfasm12_0965 PF03695 Uncharacterised protein family (UPF0149) Xfasm12_0966 PF05195 Aminopeptidase P, N-terminal domain Xfasm12_0966 PF00557 Metallopeptidase family M24 Xfasm12_0967 PF00293 NUDIX domain Xfasm12_0968 PF00881 Nitroreductase family Xfasm12_0975 PF01063 Amino-transferase class IV Xfasm12_0976 PF02954 Bacterial regulatory protein, Fis family Xfasm12_0978 PF01381 Helix-turn-helix Xfasm12_0981 PF00535 Glycosyl transferase family 2 Xfasm12_0983 PF00925 GTP cyclohydrolase II Xfasm12_0984 PF08534 Redoxin Xfasm12_0986 PF08461 Ribonuclease R winged-helix domain Xfasm12_0986 PF08206 Ribonuclease B OB domain Xfasm12_0986 PF00773 RNB domain Xfasm12_0986 PF17876 Cold shock domain Xfasm12_0986 PF00575 S1 RNA binding domain Xfasm12_0988 PF00588 SpoU rRNA Methylase family Xfasm12_0988 PF08032 RNA 2'-O ribose methyltransferase substrate binding Xfasm12_0989 PF00132 Bacterial transferase hexapeptide (six repeats) Xfasm12_0990 PF01227 GTP cyclohydrolase I Xfasm12_0992 PF05662 Coiled stalk of trimeric autotransporter adhesin Xfasm12_0992 PF05658 Head domain of trimeric autotransporter adhesin Xfasm12_0992 PF03895 YadA-like membrane anchor domain Xfasm12_0994 PF03186 CobD/Cbib protein Xfasm12_0995 PF12805 FUSC-like inner membrane protein yccS Xfasm12_0997 PF02844 Phosphoribosylglycinamide synthetase, N domain Xfasm12_0997 PF02843 Phosphoribosylglycinamide synthetase, C domain Xfasm12_0997 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Xfasm12_0998 PF02142 MGS-like domain Xfasm12_0998 PF01808 AICARFT/IMPCHase bienzyme Xfasm12_1000 PF00588 SpoU rRNA Methylase family Xfasm12_1002 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xfasm12_1002 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xfasm12_1004 PF01555 DNA methylase Xfasm12_1004 PF18273 Type III R-M EcoP15I C-terminal domain Xfasm12_1007 PF00561 alpha/beta hydrolase fold Xfasm12_1008 PF03692 Putative zinc- or iron-chelating domain Xfasm12_1011 PF02540 NAD synthase Xfasm12_1011 PF00795 Carbon-nitrogen hydrolase Xfasm12_1012 PF02091 Glycyl-tRNA synthetase alpha subunit Xfasm12_1013 PF05746 DALR anticodon binding domain Xfasm12_1013 PF02092 Glycyl-tRNA synthetase beta subunit Xfasm12_1016 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Xfasm12_1016 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Xfasm12_1017 PF00072 Response regulator receiver domain Xfasm12_1018 PF01584 CheW-like domain Xfasm12_1019 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Xfasm12_1019 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Xfasm12_1020 PF01627 Hpt domain Xfasm12_1020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_1020 PF01584 CheW-like domain Xfasm12_1020 PF00072 Response regulator receiver domain Xfasm12_1023 PF00156 Phosphoribosyl transferase domain Xfasm12_1026 PF08245 Mur ligase middle domain Xfasm12_1026 PF02875 Mur ligase family, glutamate ligase domain Xfasm12_1028 PF01432 Peptidase family M3 Xfasm12_1031 PF01625 Peptide methionine sulfoxide reductase Xfasm12_1033 PF00375 Sodium:dicarboxylate symporter family Xfasm12_1034 PF02779 Transketolase, pyrimidine binding domain Xfasm12_1034 PF00456 Transketolase, thiamine diphosphate binding domain Xfasm12_1034 PF02780 Transketolase, C-terminal domain Xfasm12_1035 PF02527 rRNA small subunit methyltransferase G Xfasm12_1036 PF01648 4'-phosphopantetheinyl transferase superfamily Xfasm12_1039 PF01526 Tn3 transposase DDE domain Xfasm12_1039 PF13700 Domain of unknown function (DUF4158) Xfasm12_1043 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Xfasm12_1043 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Xfasm12_1044 PF00890 FAD binding domain Xfasm12_1044 PF02910 Fumarate reductase flavoprotein C-term Xfasm12_1045 PF02445 Quinolinate synthetase A protein Xfasm12_1046 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Xfasm12_1046 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Xfasm12_1052 PF01026 TatD related DNase Xfasm12_1055 PF02881 SRP54-type protein, helical bundle domain Xfasm12_1055 PF00448 SRP54-type protein, GTPase domain Xfasm12_1056 PF00730 HhH-GPD superfamily base excision DNA repair protein Xfasm12_1056 PF14815 NUDIX domain Xfasm12_1056 PF00633 Helix-hairpin-helix motif Xfasm12_1057 PF04362 Bacterial Fe(2+) trafficking Xfasm12_1059 PF01709 Transcriptional regulator Xfasm12_1060 PF02075 Crossover junction endodeoxyribonuclease RuvC Xfasm12_1061 PF07499 RuvA, C-terminal domain Xfasm12_1061 PF01330 RuvA N terminal domain Xfasm12_1062 PF02705 K+ potassium transporter Xfasm12_1063 PF05491 RuvB C-terminal winged helix domain Xfasm12_1063 PF17864 RuvB AAA lid domain Xfasm12_1063 PF05496 Holliday junction DNA helicase RuvB P-loop domain Xfasm12_1064 PF03061 Thioesterase superfamily Xfasm12_1065 PF01618 MotA/TolQ/ExbB proton channel family Xfasm12_1066 PF02472 Biopolymer transport protein ExbD/TolR Xfasm12_1068 PF04052 TolB amino-terminal domain Xfasm12_1068 PF07676 WD40-like Beta Propeller Repeat Xfasm12_1069 PF00691 OmpA family Xfasm12_1071 PF04055 Radical SAM superfamily Xfasm12_1072 PF00300 Histidine phosphatase superfamily (branch 1) Xfasm12_1073 PF04493 Endonuclease V Xfasm12_1074 PF00854 POT family Xfasm12_1075 PF00255 Glutathione peroxidase Xfasm12_1076 PF00175 Oxidoreductase NAD-binding domain Xfasm12_1076 PF00970 Oxidoreductase FAD-binding domain Xfasm12_1077 PF01964 Radical SAM ThiC family Xfasm12_1077 PF13667 ThiC-associated domain Xfasm12_1078 PF10459 Peptidase S46 Xfasm12_1079 PF00300 Histidine phosphatase superfamily (branch 1) Xfasm12_1092 PF00589 Phage integrase family Xfasm12_1107 PF06508 Queuosine biosynthesis protein QueC Xfasm12_1108 PF02938 GAD domain Xfasm12_1108 PF00152 tRNA synthetases class II (D, K and N) Xfasm12_1108 PF01336 OB-fold nucleic acid binding domain Xfasm12_1109 PF05681 Fumarate hydratase (Fumerase) Xfasm12_1109 PF05683 Fumarase C-terminus Xfasm12_1114 PF00082 Subtilase family Xfasm12_1114 PF12951 Passenger-associated-transport-repeat Xfasm12_1114 PF03797 Autotransporter beta-domain Xfasm12_1118 PF00989 PAS fold Xfasm12_1118 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_1118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_1119 PF00158 Sigma-54 interaction domain Xfasm12_1119 PF00072 Response regulator receiver domain Xfasm12_1119 PF02954 Bacterial regulatory protein, Fis family Xfasm12_1121 PF01131 DNA topoisomerase Xfasm12_1121 PF01751 Toprim domain Xfasm12_1122 PF00909 Ammonium Transporter Family Xfasm12_1123 PF00543 Nitrogen regulatory protein P-II Xfasm12_1124 PF03951 Glutamine synthetase, beta-Grasp domain Xfasm12_1124 PF00120 Glutamine synthetase, catalytic domain Xfasm12_1125 PF02673 Bacitracin resistance protein BacA Xfasm12_1126 PF04264 YceI-like domain Xfasm12_1136 PF17482 Phage tail sheath C-terminal domain Xfasm12_1136 PF04984 Phage tail sheath protein subtilisin-like domain Xfasm12_1142 PF01381 Helix-turn-helix Xfasm12_1144 PF01381 Helix-turn-helix Xfasm12_1158 PF00959 Phage lysozyme Xfasm12_1167 PF17841 BID domain of Bartonella effector protein (Bep) Xfasm12_1167 PF02661 Fic/DOC family Xfasm12_1168 PF18495 Antitoxin VbhA Xfasm12_1185 PF00589 Phage integrase family Xfasm12_1185 PF02899 Phage integrase, N-terminal SAM-like domain Xfasm12_1188 PF12241 Trans-2-enoyl-CoA reductase catalytic region Xfasm12_1188 PF07055 Enoyl reductase FAD binding domain Xfasm12_1188 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Xfasm12_1190 PF03109 ABC1 family Xfasm12_1192 PF00551 Formyl transferase Xfasm12_1193 PF07683 Cobalamin synthesis protein cobW C-terminal domain Xfasm12_1193 PF02492 CobW/HypB/UreG, nucleotide-binding domain Xfasm12_1195 PF03969 AFG1-like ATPase Xfasm12_1196 PF02566 OsmC-like protein Xfasm12_1198 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Xfasm12_1200 PF17804 Tail specific protease N-terminal domain Xfasm12_1200 PF11818 C-terminal domain of tail specific protease (DUF3340) Xfasm12_1200 PF00595 PDZ domain Xfasm12_1200 PF03572 Peptidase family S41 Xfasm12_1201 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Xfasm12_1201 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Xfasm12_1202 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Xfasm12_1202 PF00205 Thiamine pyrophosphate enzyme, central domain Xfasm12_1202 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Xfasm12_1204 PF00291 Pyridoxal-phosphate dependent enzyme Xfasm12_1205 PF00682 HMGL-like Xfasm12_1205 PF08502 LeuA allosteric (dimerisation) domain Xfasm12_1206 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Xfasm12_1206 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Xfasm12_1207 PF01783 Ribosomal L32p protein family Xfasm12_1208 PF02620 Large ribosomal RNA subunit accumulation protein YceD Xfasm12_1210 PF17863 AAA lid domain Xfasm12_1210 PF07726 ATPase family associated with various cellular activities (AAA) Xfasm12_1212 PF13559 Domain of unknown function (DUF4129) Xfasm12_1212 PF01841 Transglutaminase-like superfamily Xfasm12_1212 PF11992 Domain of unknown function (DUF3488) Xfasm12_1214 PF01230 HIT domain Xfasm12_1215 PF02132 RecR protein Xfasm12_1215 PF13662 Toprim domain Xfasm12_1216 PF02575 YbaB/EbfC DNA-binding family Xfasm12_1217 PF12170 DNA polymerase III tau subunit V interacting with alpha Xfasm12_1217 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Xfasm12_1217 PF12169 DNA polymerase III subunits gamma and tau domain III Xfasm12_1221 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Xfasm12_1221 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Xfasm12_1222 PF02556 Preprotein translocase subunit SecB Xfasm12_1229 PF02237 Biotin protein ligase C terminal domain Xfasm12_1229 PF03099 Biotin/lipoate A/B protein ligase family Xfasm12_1229 PF08279 HTH domain Xfasm12_1230 PF03309 Type III pantothenate kinase Xfasm12_1237 PF01168 Alanine racemase, N-terminal domain Xfasm12_1238 PF05188 MutS domain II Xfasm12_1238 PF00488 MutS domain V Xfasm12_1238 PF01624 MutS domain I Xfasm12_1238 PF05192 MutS domain III Xfasm12_1238 PF05190 MutS family domain IV Xfasm12_1239 PF00912 Transglycosylase Xfasm12_1240 PF01430 Hsp33 protein Xfasm12_1242 PF01042 Endoribonuclease L-PSP Xfasm12_1243 PF03706 Lysylphosphatidylglycerol synthase TM region Xfasm12_1243 PF09924 Uncharacterised conserved protein (DUF2156) Xfasm12_1245 PF00109 Beta-ketoacyl synthase, N-terminal domain Xfasm12_1245 PF02801 Beta-ketoacyl synthase, C-terminal domain Xfasm12_1247 PF00535 Glycosyl transferase family 2 Xfasm12_1253 PF00437 Type II/IV secretion system protein Xfasm12_1254 PF00437 Type II/IV secretion system protein Xfasm12_1258 PF03900 Porphobilinogen deaminase, C-terminal domain Xfasm12_1258 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Xfasm12_1259 PF04397 LytTr DNA-binding domain Xfasm12_1259 PF00072 Response regulator receiver domain Xfasm12_1260 PF06580 Histidine kinase Xfasm12_1260 PF07694 5TMR of 5TMR-LYT Xfasm12_1261 PF02230 Phospholipase/Carboxylesterase Xfasm12_1262 PF13632 Glycosyl transferase family group 2 Xfasm12_1265 PF01209 ubiE/COQ5 methyltransferase family Xfasm12_1272 PF00294 pfkB family carbohydrate kinase Xfasm12_1273 PF07690 Major Facilitator Superfamily Xfasm12_1275 PF04102 SlyX Xfasm12_1276 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Xfasm12_1276 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Xfasm12_1276 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Xfasm12_1277 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xfasm12_1277 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Xfasm12_1280 PF00005 ABC transporter Xfasm12_1294 PF10876 Phage tail assemb.y chaperone protein, TAC Xfasm12_1305 PF04233 Phage Mu protein F like protein Xfasm12_1312 PF00959 Phage lysozyme Xfasm12_1316 PF01541 GIY-YIG catalytic domain Xfasm12_1316 PF02151 UvrB/uvrC motif Xfasm12_1316 PF08459 UvrC Helix-hairpin-helix N-terminal Xfasm12_1317 PF01066 CDP-alcohol phosphatidyltransferase Xfasm12_1321 PF00490 Delta-aminolevulinic acid dehydratase Xfasm12_1322 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Xfasm12_1325 PF00202 Aminotransferase class-III Xfasm12_1326 PF10609 NUBPL iron-transfer P-loop NTPase Xfasm12_1327 PF02348 Cytidylyltransferase Xfasm12_1328 PF01451 Low molecular weight phosphotyrosine protein phosphatase Xfasm12_1329 PF01555 DNA methylase Xfasm12_1338 PF00436 Single-strand binding protein family Xfasm12_1341 PF00005 ABC transporter Xfasm12_1341 PF12848 ABC transporter Xfasm12_1342 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1342 PF00593 TonB dependent receptor Xfasm12_1344 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1344 PF00593 TonB dependent receptor Xfasm12_1345 PF02254 TrkA-N domain Xfasm12_1345 PF00999 Sodium/hydrogen exchanger family Xfasm12_1346 PF12849 PBP superfamily domain Xfasm12_1347 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_1348 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_1349 PF00005 ABC transporter Xfasm12_1350 PF01895 PhoU domain Xfasm12_1351 PF00929 Exonuclease Xfasm12_1352 PF00398 Ribosomal RNA adenine dimethylase Xfasm12_1353 PF04379 ApaG domain Xfasm12_1354 PF00149 Calcineurin-like phosphoesterase Xfasm12_1358 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Xfasm12_1361 PF00929 Exonuclease Xfasm12_1362 PF00075 RNase H Xfasm12_1364 PF16123 Hydroxyacylglutathione hydrolase C-terminus Xfasm12_1364 PF00753 Metallo-beta-lactamase superfamily Xfasm12_1368 PF16921 Tex protein YqgF-like domain Xfasm12_1368 PF00575 S1 RNA binding domain Xfasm12_1368 PF09371 Tex-like protein N-terminal domain Xfasm12_1368 PF17674 HHH domain Xfasm12_1372 PF00719 Inorganic pyrophosphatase Xfasm12_1374 PF00085 Thioredoxin Xfasm12_1376 PF08264 Anticodon-binding domain of tRNA Xfasm12_1376 PF13603 Leucyl-tRNA synthetase, Domain 2 Xfasm12_1376 PF00133 tRNA synthetases class I (I, L, M and V) Xfasm12_1379 PF01467 Cytidylyltransferase-like Xfasm12_1385 PF13406 Transglycosylase SLT domain Xfasm12_1386 PF05036 Sporulation related domain Xfasm12_1386 PF03330 Lytic transglycolase Xfasm12_1404 PF08207 Elongation factor P (EF-P) KOW-like domain Xfasm12_1404 PF09285 Elongation factor P, C-terminal Xfasm12_1404 PF01132 Elongation factor P (EF-P) OB domain Xfasm12_1406 PF01565 FAD binding domain Xfasm12_1406 PF02913 FAD linked oxidases, C-terminal domain Xfasm12_1407 PF01842 ACT domain Xfasm12_1407 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Xfasm12_1407 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Xfasm12_1408 PF13520 Amino acid permease Xfasm12_1409 PF13520 Amino acid permease Xfasm12_1410 PF00596 Class II Aldolase and Adducin N-terminal domain Xfasm12_1411 PF03079 ARD/ARD' family Xfasm12_1413 PF01502 Phosphoribosyl-AMP cyclohydrolase Xfasm12_1413 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Xfasm12_1414 PF00977 Histidine biosynthesis protein Xfasm12_1415 PF00977 Histidine biosynthesis protein Xfasm12_1416 PF00117 Glutamine amidotransferase class-I Xfasm12_1417 PF00475 Imidazoleglycerol-phosphate dehydratase Xfasm12_1418 PF00155 Aminotransferase class I and II Xfasm12_1419 PF00815 Histidinol dehydrogenase Xfasm12_1420 PF01634 ATP phosphoribosyltransferase Xfasm12_1420 PF08029 HisG, C-terminal domain Xfasm12_1422 PF03129 Anticodon binding domain Xfasm12_1422 PF13393 Histidyl-tRNA synthetase Xfasm12_1423 PF00291 Pyridoxal-phosphate dependent enzyme Xfasm12_1423 PF14821 Threonine synthase N terminus Xfasm12_1424 PF00288 GHMP kinases N terminal domain Xfasm12_1424 PF08544 GHMP kinases C terminal Xfasm12_1425 PF00742 Homoserine dehydrogenase Xfasm12_1425 PF03447 Homoserine dehydrogenase, NAD binding domain Xfasm12_1425 PF01842 ACT domain Xfasm12_1425 PF00696 Amino acid kinase family Xfasm12_1425 PF13840 ACT domain Xfasm12_1426 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Xfasm12_1426 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Xfasm12_1427 PF03652 Holliday junction resolvase Xfasm12_1428 PF02622 Uncharacterized ACR, COG1678 Xfasm12_1430 PF07943 Penicillin-binding protein 5, C-terminal domain Xfasm12_1430 PF00768 D-alanyl-D-alanine carboxypeptidase Xfasm12_1432 PF00141 Peroxidase Xfasm12_1433 PF00226 DnaJ domain Xfasm12_1433 PF01556 DnaJ C terminal domain Xfasm12_1435 PF00912 Transglycosylase Xfasm12_1435 PF00905 Penicillin binding protein transpeptidase domain Xfasm12_1435 PF06832 Penicillin-Binding Protein C-terminus Family Xfasm12_1437 PF00593 TonB dependent receptor Xfasm12_1437 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1438 PF04542 Sigma-70 region 2 Xfasm12_1438 PF08281 Sigma-70, region 4 Xfasm12_1440 PF13180 PDZ domain Xfasm12_1441 PF06421 GTP-binding protein LepA C-terminus Xfasm12_1441 PF00009 Elongation factor Tu GTP binding domain Xfasm12_1441 PF03144 Elongation factor Tu domain 2 Xfasm12_1441 PF00679 Elongation factor G C-terminus Xfasm12_1442 PF10502 Signal peptidase, peptidase S26 Xfasm12_1444 PF00035 Double-stranded RNA binding motif Xfasm12_1444 PF14622 Ribonuclease-III-like Xfasm12_1445 PF07650 KH domain Xfasm12_1445 PF01926 50S ribosome-binding GTPase Xfasm12_1446 PF11967 Recombination protein O N terminal Xfasm12_1446 PF02565 Recombination protein O C terminal Xfasm12_1447 PF02780 Transketolase, C-terminal domain Xfasm12_1447 PF02779 Transketolase, pyrimidine binding domain Xfasm12_1447 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Xfasm12_1449 PF00474 Sodium:solute symporter family Xfasm12_1451 PF00501 AMP-binding enzyme Xfasm12_1451 PF16177 Acetyl-coenzyme A synthetase N-terminus Xfasm12_1451 PF13193 AMP-binding enzyme C-terminal domain Xfasm12_1452 PF02659 Putative manganese efflux pump Xfasm12_1455 PF00326 Prolyl oligopeptidase family Xfasm12_1455 PF07676 WD40-like Beta Propeller Repeat Xfasm12_1455 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Xfasm12_1456 PF03169 OPT oligopeptide transporter protein Xfasm12_1459 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Xfasm12_1459 PF01266 FAD dependent oxidoreductase Xfasm12_1460 PF00230 Major intrinsic protein Xfasm12_1461 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Xfasm12_1461 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Xfasm12_1463 PF01263 Aldose 1-epimerase Xfasm12_1465 PF01717 Cobalamin-independent synthase, Catalytic domain Xfasm12_1465 PF08267 Cobalamin-independent synthase, N-terminal domain Xfasm12_1466 PF02677 Epoxyqueuosine reductase QueH Xfasm12_1467 PF00857 Isochorismatase family Xfasm12_1468 PF00501 AMP-binding enzyme Xfasm12_1470 PF00535 Glycosyl transferase family 2 Xfasm12_1471 PF01370 NAD dependent epimerase/dehydratase family Xfasm12_1473 PF02195 ParB-like nuclease domain Xfasm12_1473 PF17762 HTH domain found in ParB protein Xfasm12_1474 PF13614 AAA domain Xfasm12_1477 PF02403 Seryl-tRNA synthetase N-terminal domain Xfasm12_1477 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xfasm12_1478 PF03544 Gram-negative bacterial TonB protein C-terminal Xfasm12_1486 PF01555 DNA methylase Xfasm12_1487 PF00959 Phage lysozyme Xfasm12_1496 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Xfasm12_1497 PF00800 Prephenate dehydratase Xfasm12_1497 PF01817 Chorismate mutase type II Xfasm12_1497 PF01842 ACT domain Xfasm12_1498 PF00266 Aminotransferase class-V Xfasm12_1500 PF12679 ABC-2 family transporter protein Xfasm12_1501 PF00005 ABC transporter Xfasm12_1503 PF00186 Dihydrofolate reductase Xfasm12_1504 PF00303 Thymidylate synthase Xfasm12_1505 PF01790 Prolipoprotein diacylglyceryl transferase Xfasm12_1506 PF01219 Prokaryotic diacylglycerol kinase Xfasm12_1508 PF00072 Response regulator receiver domain Xfasm12_1508 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_1510 PF01817 Chorismate mutase type II Xfasm12_1510 PF02153 Prephenate dehydrogenase Xfasm12_1511 PF01556 DnaJ C terminal domain Xfasm12_1511 PF00684 DnaJ central domain Xfasm12_1511 PF00226 DnaJ domain Xfasm12_1512 PF00012 Hsp70 protein Xfasm12_1513 PF01025 GrpE Xfasm12_1514 PF01628 HrcA protein C terminal domain Xfasm12_1514 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Xfasm12_1515 PF02463 RecF/RecN/SMC N terminal domain Xfasm12_1516 PF01475 Ferric uptake regulator family Xfasm12_1517 PF04355 SmpA / OmlA family Xfasm12_1518 PF03658 RnfH family Ubiquitin Xfasm12_1520 PF01668 SmpB protein Xfasm12_1522 PF00313 'Cold-shock' DNA-binding domain Xfasm12_1523 PF01048 Phosphorylase superfamily Xfasm12_1525 PF00933 Glycosyl hydrolase family 3 N terminal domain Xfasm12_1527 PF05958 tRNA (Uracil-5-)-methyltransferase Xfasm12_1528 PF00072 Response regulator receiver domain Xfasm12_1528 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_1529 PF03808 Glycosyl transferase WecB/TagA/CpsF family Xfasm12_1531 PF14667 Polysaccharide biosynthesis C-terminal domain Xfasm12_1533 PF13439 Glycosyltransferase Family 4 Xfasm12_1533 PF00534 Glycosyl transferases group 1 Xfasm12_1536 PF02397 Bacterial sugar transferase Xfasm12_1539 PF00180 Isocitrate/isopropylmalate dehydrogenase Xfasm12_1541 PF00694 Aconitase C-terminal domain Xfasm12_1542 PF00330 Aconitase family (aconitate hydratase) Xfasm12_1548 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Xfasm12_1548 PF14489 QueF-like protein Xfasm12_1549 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Xfasm12_1550 PF00873 AcrB/AcrD/AcrF family Xfasm12_1551 PF00873 AcrB/AcrD/AcrF family Xfasm12_1553 PF08240 Alcohol dehydrogenase GroES-like domain Xfasm12_1553 PF00107 Zinc-binding dehydrogenase Xfasm12_1556 PF00462 Glutaredoxin Xfasm12_1557 PF01522 Polysaccharide deacetylase Xfasm12_1560 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Xfasm12_1562 PF00239 Resolvase, N terminal domain Xfasm12_1562 PF02796 Helix-turn-helix domain of resolvase Xfasm12_1563 PF12323 Helix-turn-helix domain Xfasm12_1563 PF01385 Probable transposase Xfasm12_1563 PF07282 Putative transposase DNA-binding domain Xfasm12_1564 PF00239 Resolvase, N terminal domain Xfasm12_1565 PF00155 Aminotransferase class I and II Xfasm12_1566 PF00664 ABC transporter transmembrane region Xfasm12_1566 PF03412 Peptidase C39 family Xfasm12_1566 PF00005 ABC transporter Xfasm12_1572 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Xfasm12_1572 PF06594 Haemolysin-type calcium binding protein related domain Xfasm12_1576 PF02401 LytB protein Xfasm12_1577 PF01252 Signal peptidase (SPase) II Xfasm12_1578 PF06827 Zinc finger found in FPG and IleRS Xfasm12_1578 PF08264 Anticodon-binding domain of tRNA Xfasm12_1578 PF00133 tRNA synthetases class I (I, L, M and V) Xfasm12_1579 PF06574 FAD synthetase Xfasm12_1579 PF01687 Riboflavin kinase Xfasm12_1580 PF03023 Lipid II flippase MurJ Xfasm12_1581 PF01649 Ribosomal protein S20 Xfasm12_1582 PF01018 GTP1/OBG Xfasm12_1582 PF01926 50S ribosome-binding GTPase Xfasm12_1583 PF01016 Ribosomal L27 protein Xfasm12_1584 PF00829 Ribosomal prokaryotic L21 protein Xfasm12_1586 PF00005 ABC transporter Xfasm12_1586 PF17760 UvrA interaction domain Xfasm12_1586 PF17755 UvrA DNA-binding domain Xfasm12_1588 PF02540 NAD synthase Xfasm12_1588 PF00958 GMP synthase C terminal domain Xfasm12_1588 PF00117 Glutamine amidotransferase class-I Xfasm12_1589 PF00478 IMP dehydrogenase / GMP reductase domain Xfasm12_1589 PF00571 CBS domain Xfasm12_1590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Xfasm12_1590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Xfasm12_1591 PF00483 Nucleotidyl transferase Xfasm12_1592 PF02719 Polysaccharide biosynthesis protein Xfasm12_1593 PF00953 Glycosyl transferase family 4 Xfasm12_1594 PF18073 Rubredoxin metal binding domain Xfasm12_1596 PF00216 Bacterial DNA-binding protein Xfasm12_1597 PF00575 S1 RNA binding domain Xfasm12_1598 PF02224 Cytidylate kinase Xfasm12_1599 PF00444 Ribosomal protein L36 Xfasm12_1601 PF04371 Porphyromonas-type peptidyl-arginine deiminase Xfasm12_1602 PF00795 Carbon-nitrogen hydrolase Xfasm12_1605 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_1606 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_1610 PF02616 Segregation and condensation protein ScpA Xfasm12_1611 PF04079 Segregation and condensation complex subunit ScpB Xfasm12_1613 PF01479 S4 domain Xfasm12_1613 PF00849 RNA pseudouridylate synthase Xfasm12_1615 PF00795 Carbon-nitrogen hydrolase Xfasm12_1616 PF00155 Aminotransferase class I and II Xfasm12_1617 PF00005 ABC transporter Xfasm12_1618 PF03379 CcmB protein Xfasm12_1619 PF01578 Cytochrome C assembly protein Xfasm12_1621 PF03100 CcmE Xfasm12_1622 PF01578 Cytochrome C assembly protein Xfasm12_1622 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Xfasm12_1623 PF08534 Redoxin Xfasm12_1624 PF03918 Cytochrome C biogenesis protein Xfasm12_1627 PF00561 alpha/beta hydrolase fold Xfasm12_1628 PF00295 Glycosyl hydrolases family 28 Xfasm12_1630 PF13419 Haloacid dehalogenase-like hydrolase Xfasm12_1632 PF01979 Amidohydrolase family Xfasm12_1633 PF08207 Elongation factor P (EF-P) KOW-like domain Xfasm12_1633 PF09285 Elongation factor P, C-terminal Xfasm12_1633 PF01132 Elongation factor P (EF-P) OB domain Xfasm12_1634 PF04055 Radical SAM superfamily Xfasm12_1635 PF00588 SpoU rRNA Methylase family Xfasm12_1636 PF00459 Inositol monophosphatase family Xfasm12_1640 PF09115 DNA polymerase III, delta subunit, C terminal Xfasm12_1641 PF02618 YceG-like family Xfasm12_1642 PF04715 Anthranilate synthase component I, N terminal region Xfasm12_1642 PF00425 chorismate binding enzyme Xfasm12_1643 PF00109 Beta-ketoacyl synthase, N-terminal domain Xfasm12_1643 PF02801 Beta-ketoacyl synthase, C-terminal domain Xfasm12_1644 PF00550 Phosphopantetheine attachment site Xfasm12_1646 PF00698 Acyl transferase domain Xfasm12_1647 PF00456 Transketolase, thiamine diphosphate binding domain Xfasm12_1647 PF17831 Pyruvate dehydrogenase E1 component middle domain Xfasm12_1648 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Xfasm12_1648 PF06594 Haemolysin-type calcium binding protein related domain Xfasm12_1651 PF00348 Polyprenyl synthetase Xfasm12_1652 PF02609 Exonuclease VII small subunit Xfasm12_1653 PF01171 PP-loop family Xfasm12_1653 PF11734 TilS substrate C-terminal domain Xfasm12_1653 PF09179 TilS substrate binding domain Xfasm12_1655 PF00245 Alkaline phosphatase Xfasm12_1656 PF00375 Sodium:dicarboxylate symporter family Xfasm12_1658 PF00877 NlpC/P60 family Xfasm12_1659 PF00877 NlpC/P60 family Xfasm12_1660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xfasm12_1661 PF04235 Protein of unknown function (DUF418) Xfasm12_1665 PF00730 HhH-GPD superfamily base excision DNA repair protein Xfasm12_1665 PF10576 Iron-sulfur binding domain of endonuclease III Xfasm12_1665 PF00633 Helix-hairpin-helix motif Xfasm12_1667 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Xfasm12_1667 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Xfasm12_1670 PF01555 DNA methylase Xfasm12_1685 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Xfasm12_1685 PF08501 Shikimate dehydrogenase substrate binding domain Xfasm12_1685 PF01488 Shikimate / quinate 5-dehydrogenase Xfasm12_1688 PF02581 Thiamine monophosphate synthase Xfasm12_1688 PF08543 Phosphomethylpyrimidine kinase Xfasm12_1689 PF11412 Disulphide bond corrector protein DsbC Xfasm12_1689 PF02683 Cytochrome C biogenesis protein transmembrane region Xfasm12_1690 PF03091 CutA1 divalent ion tolerance protein Xfasm12_1692 PF00166 Chaperonin 10 Kd subunit Xfasm12_1693 PF00118 TCP-1/cpn60 chaperonin family Xfasm12_1700 PF01370 NAD dependent epimerase/dehydratase family Xfasm12_1701 PF16363 GDP-mannose 4,6 dehydratase Xfasm12_1704 PF00291 Pyridoxal-phosphate dependent enzyme Xfasm12_1708 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1708 PF00593 TonB dependent receptor Xfasm12_1709 PF18331 PKHD-type hydroxylase C-terminal domain Xfasm12_1709 PF13640 2OG-Fe(II) oxygenase superfamily Xfasm12_1713 PF02424 ApbE family Xfasm12_1715 PF01636 Phosphotransferase enzyme family Xfasm12_1716 PF00483 Nucleotidyl transferase Xfasm12_1717 PF00308 Bacterial dnaA protein Xfasm12_1718 PF01594 AI-2E family transporter Xfasm12_1720 PF00586 AIR synthase related protein, N-terminal domain Xfasm12_1720 PF02769 AIR synthase related protein, C-terminal domain Xfasm12_1722 PF00551 Formyl transferase Xfasm12_1726 PF02223 Thymidylate kinase Xfasm12_1728 PF01431 Peptidase family M13 Xfasm12_1728 PF05649 Peptidase family M13 Xfasm12_1731 PF07977 FabA-like domain Xfasm12_1733 PF01171 PP-loop family Xfasm12_1734 PF04381 Putative exonuclease, RdgC Xfasm12_1736 PF00762 Ferrochelatase Xfasm12_1738 PF02416 mttA/Hcf106 family Xfasm12_1739 PF02416 mttA/Hcf106 family Xfasm12_1740 PF00902 Sec-independent protein translocase protein (TatC) Xfasm12_1742 PF00117 Glutamine amidotransferase class-I Xfasm12_1742 PF00958 GMP synthase C terminal domain Xfasm12_1745 PF00127 Copper binding proteins, plastocyanin/azurin family Xfasm12_1746 PF03193 RsgA GTPase Xfasm12_1748 PF02021 Uncharacterised protein family UPF0102 Xfasm12_1749 PF04348 LppC putative lipoprotein Xfasm12_1750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xfasm12_1752 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1752 PF00593 TonB dependent receptor Xfasm12_1753 PF01588 Putative tRNA binding domain Xfasm12_1753 PF09334 tRNA synthetases class I (M) Xfasm12_1754 PF04060 Putative Fe-S cluster Xfasm12_1764 PF00114 Pilin (bacterial filament) Xfasm12_1764 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_1765 PF05567 Neisseria PilC beta-propeller domain Xfasm12_1769 PF00114 Pilin (bacterial filament) Xfasm12_1769 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_1770 PF11892 Domain of unknown function (DUF3412) Xfasm12_1770 PF03641 Possible lysine decarboxylase Xfasm12_1770 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Xfasm12_1771 PF12792 CSS motif domain associated with EAL Xfasm12_1771 PF00563 EAL domain Xfasm12_1774 PF00899 ThiF family Xfasm12_1775 PF01926 50S ribosome-binding GTPase Xfasm12_1775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Xfasm12_1776 PF01011 PQQ enzyme repeat Xfasm12_1776 PF13360 PQQ-like domain Xfasm12_1780 PF04055 Radical SAM superfamily Xfasm12_1781 PF00334 Nucleoside diphosphate kinase Xfasm12_1782 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Xfasm12_1782 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Xfasm12_1784 PF00709 Adenylosuccinate synthetase Xfasm12_1786 PF01145 SPFH domain / Band 7 family Xfasm12_1787 PF12221 Bacterial membrane protein N terminal Xfasm12_1787 PF01145 SPFH domain / Band 7 family Xfasm12_1788 PF00107 Zinc-binding dehydrogenase Xfasm12_1788 PF08240 Alcohol dehydrogenase GroES-like domain Xfasm12_1789 PF00072 Response regulator receiver domain Xfasm12_1794 PF03129 Anticodon binding domain Xfasm12_1794 PF04073 Aminoacyl-tRNA editing domain Xfasm12_1794 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xfasm12_1796 PF01066 CDP-alcohol phosphatidyltransferase Xfasm12_1800 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xfasm12_1800 PF14310 Fibronectin type III-like domain Xfasm12_1800 PF00933 Glycosyl hydrolase family 3 N terminal domain Xfasm12_1801 PF00924 Mechanosensitive ion channel Xfasm12_1802 PF02152 Dihydroneopterin aldolase Xfasm12_1803 PF00814 Glycoprotease family Xfasm12_1804 PF01165 Ribosomal protein S21 Xfasm12_1805 PF09424 Yqey-like protein Xfasm12_1806 PF03631 Virulence factor BrkB Xfasm12_1807 PF10410 DnaB-helicase binding domain of primase Xfasm12_1807 PF08278 DNA primase DnaG DnaB-binding Xfasm12_1807 PF08275 DNA primase catalytic core, N-terminal domain Xfasm12_1807 PF01807 CHC2 zinc finger Xfasm12_1809 PF01555 DNA methylase Xfasm12_1811 PF00579 tRNA synthetases class I (W and Y) Xfasm12_1812 PF13538 UvrD-like helicase C-terminal domain Xfasm12_1814 PF00580 UvrD/REP helicase N-terminal domain Xfasm12_1814 PF13361 UvrD-like helicase C-terminal domain Xfasm12_1814 PF12705 PD-(D/E)XK nuclease superfamily Xfasm12_1815 PF17946 RecC C-terminal domain Xfasm12_1816 PF00005 ABC transporter Xfasm12_1817 PF02405 Permease MlaE Xfasm12_1819 PF05494 MlaC protein Xfasm12_1821 PF04333 MlaA lipoprotein Xfasm12_1823 PF02646 RmuC family Xfasm12_1824 PF00005 ABC transporter Xfasm12_1827 PF13520 Amino acid permease Xfasm12_1828 PF10672 S-adenosylmethionine-dependent methyltransferase Xfasm12_1828 PF17785 PUA-like domain Xfasm12_1829 PF03741 Integral membrane protein TerC family Xfasm12_1830 PF01521 Iron-sulphur cluster biosynthesis Xfasm12_1833 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_1833 PF00072 Response regulator receiver domain Xfasm12_1837 PF00210 Ferritin-like domain Xfasm12_1839 PF00293 NUDIX domain Xfasm12_1840 PF00438 S-adenosylmethionine synthetase, N-terminal domain Xfasm12_1840 PF02772 S-adenosylmethionine synthetase, central domain Xfasm12_1840 PF02773 S-adenosylmethionine synthetase, C-terminal domain Xfasm12_1841 PF08918 PhoQ Sensor Xfasm12_1841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_1842 PF00072 Response regulator receiver domain Xfasm12_1842 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_1844 PF01207 Dihydrouridine synthase (Dus) Xfasm12_1847 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1847 PF00593 TonB dependent receptor Xfasm12_1850 PF17871 AAA lid domain Xfasm12_1850 PF07724 AAA domain (Cdc48 subfamily) Xfasm12_1850 PF10431 C-terminal, D2-small domain, of ClpB protein Xfasm12_1850 PF02861 Clp amino terminal domain, pathogenicity island component Xfasm12_1850 PF00004 ATPase family associated with various cellular activities (AAA) Xfasm12_1851 PF00301 Rubredoxin Xfasm12_1852 PF02581 Thiamine monophosphate synthase Xfasm12_1853 PF00067 Cytochrome P450 Xfasm12_1854 PF08019 Phosphoethanolamine transferase EptA/EptB Xfasm12_1854 PF00884 Sulfatase Xfasm12_1856 PF07660 Secretin and TonB N terminus short domain Xfasm12_1856 PF03958 Bacterial type II/III secretion system short domain Xfasm12_1856 PF00263 Bacterial type II and III secretion system protein Xfasm12_1856 PF11741 AMIN domain Xfasm12_1861 PF17092 Penicillin-binding protein OB-like domain Xfasm12_1861 PF00905 Penicillin binding protein transpeptidase domain Xfasm12_1861 PF00912 Transglycosylase Xfasm12_1862 PF00248 Aldo/keto reductase family Xfasm12_1863 PF00294 pfkB family carbohydrate kinase Xfasm12_1865 PF05736 OprF membrane domain Xfasm12_1865 PF00691 OmpA family Xfasm12_1867 PF03796 DnaB-like helicase C terminal domain Xfasm12_1867 PF00772 DnaB-like helicase N terminal domain Xfasm12_1870 PF00067 Cytochrome P450 Xfasm12_1872 PF00270 DEAD/DEAH box helicase Xfasm12_1872 PF00271 Helicase conserved C-terminal domain Xfasm12_1872 PF17191 RecG wedge domain Xfasm12_1873 PF01042 Endoribonuclease L-PSP Xfasm12_1874 PF13291 ACT domain Xfasm12_1874 PF02824 TGS domain Xfasm12_1874 PF04607 Region found in RelA / SpoT proteins Xfasm12_1878 PF02913 FAD linked oxidases, C-terminal domain Xfasm12_1878 PF01565 FAD binding domain Xfasm12_1880 PF00691 OmpA family Xfasm12_1880 PF05736 OprF membrane domain Xfasm12_1882 PF02600 Disulfide bond formation protein DsbB Xfasm12_1883 PF00593 TonB dependent receptor Xfasm12_1883 PF07715 TonB-dependent Receptor Plug Domain Xfasm12_1884 PF02590 Predicted SPOUT methyltransferase Xfasm12_1890 PF12323 Helix-turn-helix domain Xfasm12_1890 PF01385 Probable transposase Xfasm12_1890 PF07282 Putative transposase DNA-binding domain Xfasm12_1894 PF17757 UvrB interaction domain Xfasm12_1894 PF00271 Helicase conserved C-terminal domain Xfasm12_1894 PF04851 Type III restriction enzyme, res subunit Xfasm12_1894 PF12344 Ultra-violet resistance protein B Xfasm12_1894 PF02151 UvrB/uvrC motif Xfasm12_1897 PF00701 Dihydrodipicolinate synthetase family Xfasm12_1899 PF00578 AhpC/TSA family Xfasm12_1903 PF02769 AIR synthase related protein, C-terminal domain Xfasm12_1903 PF00586 AIR synthase related protein, N-terminal domain Xfasm12_1904 PF01029 NusB family Xfasm12_1905 PF00885 6,7-dimethyl-8-ribityllumazine synthase Xfasm12_1906 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Xfasm12_1906 PF00925 GTP cyclohydrolase II Xfasm12_1907 PF00677 Lumazine binding domain Xfasm12_1908 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Xfasm12_1908 PF01872 RibD C-terminal domain Xfasm12_1910 PF03477 ATP cone domain Xfasm12_1912 PF00464 Serine hydroxymethyltransferase Xfasm12_1913 PF12848 ABC transporter Xfasm12_1913 PF00005 ABC transporter Xfasm12_1915 PF06039 Malate:quinone oxidoreductase (Mqo) Xfasm12_1916 PF04134 Protein of unknown function, DUF393 Xfasm12_1918 PF00849 RNA pseudouridylate synthase Xfasm12_1918 PF01479 S4 domain Xfasm12_1919 PF13525 Outer membrane lipoprotein Xfasm12_1922 PF02421 Ferrous iron transport protein B Xfasm12_1922 PF07670 Nucleoside recognition Xfasm12_1922 PF07664 Ferrous iron transport protein B C terminus Xfasm12_1926 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Xfasm12_1927 PF01189 16S rRNA methyltransferase RsmB/F Xfasm12_1927 PF01029 NusB family Xfasm12_1928 PF00551 Formyl transferase Xfasm12_1928 PF02911 Formyl transferase, C-terminal domain Xfasm12_1929 PF01327 Polypeptide deformylase Xfasm12_1931 PF02481 DNA recombination-mediator protein A Xfasm12_1931 PF17782 DprA winged helix domain Xfasm12_1932 PF04361 Protein of unknown function (DUF494) Xfasm12_1934 PF13368 Topoisomerase C-terminal repeat Xfasm12_1934 PF01751 Toprim domain Xfasm12_1934 PF01131 DNA topoisomerase Xfasm12_1935 PF01300 Telomere recombination Xfasm12_1941 PF04386 Stringent starvation protein B Xfasm12_1942 PF02798 Glutathione S-transferase, N-terminal domain Xfasm12_1942 PF00043 Glutathione S-transferase, C-terminal domain Xfasm12_1943 PF02167 Cytochrome C1 family Xfasm12_1944 PF00032 Cytochrome b(C-terminal)/b6/petD Xfasm12_1944 PF00033 Cytochrome b/b6/petB Xfasm12_1945 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Xfasm12_1945 PF00355 Rieske [2Fe-2S] domain Xfasm12_1946 PF01464 Transglycosylase SLT domain Xfasm12_1947 PF00919 Uncharacterized protein family UPF0004 Xfasm12_1947 PF04055 Radical SAM superfamily Xfasm12_1947 PF01938 TRAM domain Xfasm12_1948 PF02562 PhoH-like protein Xfasm12_1949 PF02130 Uncharacterized protein family UPF0054 Xfasm12_1951 PF00571 CBS domain Xfasm12_1951 PF03471 Transporter associated domain Xfasm12_1953 PF01544 CorA-like Mg2+ transporter protein Xfasm12_1965 PF00912 Transglycosylase Xfasm12_1965 PF00905 Penicillin binding protein transpeptidase domain Xfasm12_1965 PF14814 Bifunctional transglycosylase second domain Xfasm12_1967 PF04851 Type III restriction enzyme, res subunit Xfasm12_1967 PF13307 Helicase C-terminal domain Xfasm12_1969 PF00484 Carbonic anhydrase Xfasm12_1971 PF01522 Polysaccharide deacetylase Xfasm12_1974 PF00005 ABC transporter Xfasm12_1974 PF09383 NIL domain Xfasm12_1975 PF00528 Binding-protein-dependent transport system inner membrane component Xfasm12_1976 PF03180 NLPA lipoprotein Xfasm12_1980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Xfasm12_1980 PF00364 Biotin-requiring enzyme Xfasm12_1980 PF02817 e3 binding domain Xfasm12_1981 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Xfasm12_1981 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xfasm12_1983 PF01545 Cation efflux family Xfasm12_1985 PF01053 Cys/Met metabolism PLP-dependent enzyme Xfasm12_1986 PF00561 alpha/beta hydrolase fold Xfasm12_1987 PF01551 Peptidase family M23 Xfasm12_1992 PF01975 Survival protein SurE Xfasm12_1994 PF09335 SNARE associated Golgi protein Xfasm12_1995 PF01476 LysM domain Xfasm12_1995 PF01551 Peptidase family M23 Xfasm12_1997 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_1997 PF00989 PAS fold Xfasm12_1997 PF16736 Single Cache-like Xfasm12_1997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_1999 PF01168 Alanine racemase, N-terminal domain Xfasm12_1999 PF00842 Alanine racemase, C-terminal domain Xfasm12_2000 PF01266 FAD dependent oxidoreductase Xfasm12_2001 PF01641 SelR domain Xfasm12_2002 PF01476 LysM domain Xfasm12_2002 PF00704 Glycosyl hydrolases family 18 Xfasm12_2003 PF02838 Glycosyl hydrolase family 20, domain 2 Xfasm12_2003 PF07691 PA14 domain Xfasm12_2003 PF00728 Glycosyl hydrolase family 20, catalytic domain Xfasm12_2005 PF00933 Glycosyl hydrolase family 3 N terminal domain Xfasm12_2005 PF01915 Glycosyl hydrolase family 3 C-terminal domain Xfasm12_2005 PF07691 PA14 domain Xfasm12_2005 PF14310 Fibronectin type III-like domain Xfasm12_2008 PF17678 Glycosyl hydrolase family 92 N-terminal domain Xfasm12_2008 PF07971 Glycosyl hydrolase family 92 Xfasm12_2009 PF01301 Glycosyl hydrolases family 35 Xfasm12_2010 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Xfasm12_2011 PF09312 SurA N-terminal domain Xfasm12_2011 PF00639 PPIC-type PPIASE domain Xfasm12_2012 PF03968 OstA-like protein Xfasm12_2012 PF04453 LPS transport system D Xfasm12_2014 PF01494 FAD binding domain Xfasm12_2015 PF01494 FAD binding domain Xfasm12_2017 PF03466 LysR substrate binding domain Xfasm12_2017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Xfasm12_2018 PF14824 Sirohaem biosynthesis protein central Xfasm12_2018 PF10414 Sirohaem synthase dimerisation region Xfasm12_2018 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Xfasm12_2019 PF00291 Pyridoxal-phosphate dependent enzyme Xfasm12_2023 PF00274 Fructose-bisphosphate aldolase class-I Xfasm12_2025 PF00224 Pyruvate kinase, barrel domain Xfasm12_2025 PF02887 Pyruvate kinase, alpha/beta domain Xfasm12_2027 PF00162 Phosphoglycerate kinase Xfasm12_2028 PF00749 tRNA synthetases class I (E and Q), catalytic domain Xfasm12_2029 PF01475 Ferric uptake regulator family Xfasm12_2034 PF00675 Insulinase (Peptidase family M16) Xfasm12_2034 PF05193 Peptidase M16 inactive domain Xfasm12_2037 PF03330 Lytic transglycolase Xfasm12_2039 PF02810 SEC-C motif Xfasm12_2039 PF07517 SecA DEAD-like domain Xfasm12_2039 PF07516 SecA Wing and Scaffold domain Xfasm12_2039 PF01043 SecA preprotein cross-linking domain Xfasm12_2040 PF08525 Opacity-associated protein A N-terminal motif Xfasm12_2040 PF01476 LysM domain Xfasm12_2040 PF01551 Peptidase family M23 Xfasm12_2042 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Xfasm12_2043 PF00091 Tubulin/FtsZ family, GTPase domain Xfasm12_2043 PF12327 FtsZ family, C-terminal domain Xfasm12_2044 PF02491 SHS2 domain inserted in FTSA Xfasm12_2045 PF08478 POTRA domain, FtsQ-type Xfasm12_2045 PF03799 Cell division protein FtsQ Xfasm12_2046 PF07478 D-ala D-ala ligase C-terminus Xfasm12_2046 PF01820 D-ala D-ala ligase N-terminus Xfasm12_2047 PF08245 Mur ligase middle domain Xfasm12_2047 PF02875 Mur ligase family, glutamate ligase domain Xfasm12_2047 PF01225 Mur ligase family, catalytic domain Xfasm12_2048 PF03033 Glycosyltransferase family 28 N-terminal domain Xfasm12_2048 PF04101 Glycosyltransferase family 28 C-terminal domain Xfasm12_2049 PF01098 Cell cycle protein Xfasm12_2050 PF00953 Glycosyl transferase family 4 Xfasm12_2051 PF01225 Mur ligase family, catalytic domain Xfasm12_2051 PF08245 Mur ligase middle domain Xfasm12_2051 PF02875 Mur ligase family, glutamate ligase domain Xfasm12_2052 PF08245 Mur ligase middle domain Xfasm12_2052 PF02875 Mur ligase family, glutamate ligase domain Xfasm12_2052 PF01225 Mur ligase family, catalytic domain Xfasm12_2053 PF00905 Penicillin binding protein transpeptidase domain Xfasm12_2053 PF03717 Penicillin-binding Protein dimerisation domain Xfasm12_2054 PF04999 Cell division protein FtsL Xfasm12_2055 PF01795 MraW methylase family Xfasm12_2056 PF02381 MraZ protein, putative antitoxin-like Xfasm12_2059 PF03600 Citrate transporter Xfasm12_2059 PF02080 TrkA-C domain Xfasm12_2060 PF02390 Putative methyltransferase Xfasm12_2061 PF05690 Thiazole biosynthesis protein ThiG Xfasm12_2062 PF02597 ThiS family Xfasm12_2062 PF05690 Thiazole biosynthesis protein ThiG Xfasm12_2068 PF07977 FabA-like domain Xfasm12_2075 PF04143 Sulphur transport Xfasm12_2078 PF01925 Sulfite exporter TauE/SafE Xfasm12_2079 PF00692 dUTPase Xfasm12_2081 PF01119 DNA mismatch repair protein, C-terminal domain Xfasm12_2081 PF08676 MutL C terminal dimerisation domain Xfasm12_2082 PF01520 N-acetylmuramoyl-L-alanine amidase Xfasm12_2082 PF11741 AMIN domain Xfasm12_2083 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Xfasm12_2084 PF01256 Carbohydrate kinase Xfasm12_2084 PF03853 YjeF-related protein N-terminus Xfasm12_2085 PF02601 Exonuclease VII, large subunit Xfasm12_2085 PF13742 OB-fold nucleic acid binding domain Xfasm12_2088 PF00570 HRDC domain Xfasm12_2088 PF01612 3'-5' exonuclease Xfasm12_2090 PF18125 RlmM ferredoxin-like domain Xfasm12_2090 PF01728 FtsJ-like methyltransferase Xfasm12_2093 PF00216 Bacterial DNA-binding protein Xfasm12_2094 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Xfasm12_2094 PF01588 Putative tRNA binding domain Xfasm12_2094 PF03147 Ferredoxin-fold anticodon binding domain Xfasm12_2094 PF03483 B3/4 domain Xfasm12_2094 PF03484 tRNA synthetase B5 domain Xfasm12_2095 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Xfasm12_2095 PF01409 tRNA synthetases class II core domain (F) Xfasm12_2096 PF00453 Ribosomal protein L20 Xfasm12_2097 PF01632 Ribosomal protein L35 Xfasm12_2098 PF05198 Translation initiation factor IF-3, N-terminal domain Xfasm12_2098 PF00707 Translation initiation factor IF-3, C-terminal domain Xfasm12_2099 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Xfasm12_2099 PF03129 Anticodon binding domain Xfasm12_2099 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Xfasm12_2099 PF02824 TGS domain Xfasm12_2103 PF18030 RimK PreATP-grasp domain Xfasm12_2103 PF08443 RimK-like ATP-grasp domain Xfasm12_2105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_2105 PF00672 HAMP domain Xfasm12_2105 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_2106 PF01121 Dephospho-CoA kinase Xfasm12_2107 PF01478 Type IV leader peptidase family Xfasm12_2107 PF06750 Bacterial Peptidase A24 N-terminal domain Xfasm12_2108 PF00482 Type II secretion system (T2SS), protein F Xfasm12_2109 PF00114 Pilin (bacterial filament) Xfasm12_2109 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_2112 PF07963 Prokaryotic N-terminal methylation motif Xfasm12_2112 PF00114 Pilin (bacterial filament) Xfasm12_2114 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Xfasm12_2114 PF00437 Type II/IV secretion system protein Xfasm12_2115 PF00072 Response regulator receiver domain Xfasm12_2115 PF02954 Bacterial regulatory protein, Fis family Xfasm12_2115 PF00158 Sigma-54 interaction domain Xfasm12_2116 PF00512 His Kinase A (phospho-acceptor) domain Xfasm12_2116 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Xfasm12_2117 PF00549 CoA-ligase Xfasm12_2117 PF08442 ATP-grasp domain Xfasm12_2118 PF02629 CoA binding domain Xfasm12_2118 PF00549 CoA-ligase Xfasm12_2120 PF17287 POTRA domain Xfasm12_2120 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Xfasm12_2120 PF08479 POTRA domain, ShlB-type Xfasm12_2123 PF00521 DNA gyrase/topoisomerase IV, subunit A Xfasm12_2123 PF03989 DNA gyrase C-terminal domain, beta-propeller Xfasm12_2124 PF01008 Initiation factor 2 subunit family Xfasm12_2126 PF00152 tRNA synthetases class II (D, K and N) Xfasm12_2128 PF00533 BRCA1 C Terminus (BRCT) domain Xfasm12_2128 PF01653 NAD-dependent DNA ligase adenylation domain Xfasm12_2128 PF03120 NAD-dependent DNA ligase OB-fold domain Xfasm12_2128 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Xfasm12_2128 PF12826 Helix-hairpin-helix motif Xfasm12_2129 PF04354 ZipA, C-terminal FtsZ-binding domain Xfasm12_2130 PF02463 RecF/RecN/SMC N terminal domain Xfasm12_2131 PF03948 Ribosomal protein L9, C-terminal domain Xfasm12_2131 PF01281 Ribosomal protein L9, N-terminal domain Xfasm12_2132 PF01084 Ribosomal protein S18 Xfasm12_2133 PF01250 Ribosomal protein S6 Xfasm12_2134 PF01521 Iron-sulphur cluster biosynthesis Xfasm12_2135 PF00152 tRNA synthetases class II (D, K and N) Xfasm12_2135 PF01336 OB-fold nucleic acid binding domain Xfasm12_2139 PF01061 ABC-2 type transporter Xfasm12_2140 PF00005 ABC transporter Xfasm12_2143 PF01180 Dihydroorotate dehydrogenase Xfasm12_2144 PF01565 FAD binding domain Xfasm12_2144 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Xfasm12_2145 PF00892 EamA-like transporter family Xfasm12_2146 PF01569 PAP2 superfamily Xfasm12_2147 PF04551 GcpE protein Xfasm12_2149 PF00072 Response regulator receiver domain Xfasm12_2150 PF00889 Elongation factor TS Xfasm12_2151 PF00318 Ribosomal protein S2 Xfasm12_2153 PF00005 ABC transporter Xfasm12_2153 PF00664 ABC transporter transmembrane region Xfasm12_2156 PF02321 Outer membrane efflux protein Xfasm12_2158 PF00149 Calcineurin-like phosphoesterase Xfasm12_2160 PF02541 Ppx/GppA phosphatase family Xfasm12_2161 PF17941 Polyphosphate kinase C-terminal domain 1 Xfasm12_2161 PF13089 Polyphosphate kinase N-terminal domain Xfasm12_2161 PF13090 Polyphosphate kinase C-terminal domain 2 Xfasm12_2161 PF02503 Polyphosphate kinase middle domain Xfasm12_2163 PF00072 Response regulator receiver domain Xfasm12_2163 PF00486 Transcriptional regulatory protein, C terminal Xfasm12_2164 PF01435 Peptidase family M48 Xfasm12_2164 PF13181 Tetratricopeptide repeat Xfasm12_2165 PF00462 Glutaredoxin Xfasm12_2166 PF00180 Isocitrate/isopropylmalate dehydrogenase Xfasm12_2166 PF18324 Hypothetical protein TT1725 Xfasm12_2168 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Xfasm12_2168 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Xfasm12_2169 PF00884 Sulfatase Xfasm12_2169 PF11893 Domain of unknown function (DUF3413) Xfasm12_2170 PF00037 4Fe-4S binding domain Xfasm12_2170 PF11953 Domain of unknown function (DUF3470) Xfasm12_2172 PF01106 NifU-like domain Xfasm12_2173 PF01329 Pterin 4 alpha carbinolamine dehydratase Xfasm12_2175 PF01479 S4 domain Xfasm12_2175 PF00849 RNA pseudouridylate synthase Xfasm12_2176 PF12111 Polyribonucleotide phosphorylase C terminal Xfasm12_2176 PF10150 Ribonuclease E/G family Xfasm12_2176 PF00575 S1 RNA binding domain Xfasm12_2177 PF00072 Response regulator receiver domain Xfasm12_2177 PF00196 Bacterial regulatory proteins, luxR family Xfasm12_2181 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Xfasm12_2181 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Xfasm12_2182 PF00545 ribonuclease Xfasm12_2185 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Xfasm12_2186 PF00313 'Cold-shock' DNA-binding domain Xfasm12_2188 PF00563 EAL domain Xfasm12_2188 PF01590 GAF domain Xfasm12_2188 PF00990 Diguanylate cyclase, GGDEF domain Xfasm12_2188 PF00360 Phytochrome region Xfasm12_2189 PF01435 Peptidase family M48 Xfasm12_2191 PF00009 Elongation factor Tu GTP binding domain Xfasm12_2191 PF03143 Elongation factor Tu C-terminal domain Xfasm12_2191 PF03144 Elongation factor Tu domain 2 Xfasm12_2192 PF14492 Elongation Factor G, domain II Xfasm12_2192 PF03764 Elongation factor G, domain IV Xfasm12_2192 PF00009 Elongation factor Tu GTP binding domain Xfasm12_2192 PF00679 Elongation factor G C-terminus Xfasm12_2192 PF03144 Elongation factor Tu domain 2 Xfasm12_2193 PF00177 Ribosomal protein S7p/S5e Xfasm12_2194 PF00164 Ribosomal protein S12/S23 Xfasm12_2195 PF05000 RNA polymerase Rpb1, domain 4 Xfasm12_2195 PF04998 RNA polymerase Rpb1, domain 5 Xfasm12_2195 PF04983 RNA polymerase Rpb1, domain 3 Xfasm12_2195 PF00623 RNA polymerase Rpb1, domain 2 Xfasm12_2195 PF04997 RNA polymerase Rpb1, domain 1 Xfasm12_2196 PF04563 RNA polymerase beta subunit Xfasm12_2196 PF04561 RNA polymerase Rpb2, domain 2 Xfasm12_2196 PF10385 RNA polymerase beta subunit external 1 domain Xfasm12_2196 PF04565 RNA polymerase Rpb2, domain 3 Xfasm12_2196 PF04560 RNA polymerase Rpb2, domain 7 Xfasm12_2196 PF00562 RNA polymerase Rpb2, domain 6 Xfasm12_2197 PF16320 Ribosomal protein L7/L12 dimerisation domain Xfasm12_2197 PF00542 Ribosomal protein L7/L12 C-terminal domain Xfasm12_2198 PF00466 Ribosomal protein L10 Xfasm12_2199 PF00687 Ribosomal protein L1p/L10e family Xfasm12_2200 PF03946 Ribosomal protein L11, N-terminal domain Xfasm12_2200 PF00298 Ribosomal protein L11, RNA binding domain Xfasm12_2201 PF00467 KOW motif Xfasm12_2201 PF02357 Transcription termination factor nusG Xfasm12_2202 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Xfasm12_2203 PF00009 Elongation factor Tu GTP binding domain Xfasm12_2203 PF03143 Elongation factor Tu C-terminal domain Xfasm12_2203 PF03144 Elongation factor Tu domain 2 Xfasm12_2204 PF01926 50S ribosome-binding GTPase Xfasm12_2204 PF06071 Protein of unknown function (DUF933) Xfasm12_2205 PF01195 Peptidyl-tRNA hydrolase Xfasm12_2206 PF14693 Ribosomal protein TL5, C-terminal domain Xfasm12_2206 PF01386 Ribosomal L25p family Xfasm12_2207 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Xfasm12_2207 PF14572 Phosphoribosyl synthetase-associated domain Xfasm12_2208 PF08544 GHMP kinases C terminal Xfasm12_2208 PF00288 GHMP kinases N terminal domain Xfasm12_2209 PF03550 Outer membrane lipoprotein LolB Xfasm12_2211 PF01488 Shikimate / quinate 5-dehydrogenase Xfasm12_2211 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Xfasm12_2211 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Xfasm12_2212 PF00472 RF-1 domain Xfasm12_2212 PF03462 PCRF domain Xfasm12_2214 PF01170 Putative RNA methylase family UPF0020 Xfasm12_2214 PF02926 THUMP domain Xfasm12_2214 PF10672 S-adenosylmethionine-dependent methyltransferase Xfasm12_2224 PF01914 MarC family integral membrane protein Xfasm12_2225 PF00462 Glutaredoxin Xfasm12_2226 PF02222 ATP-grasp domain Xfasm12_2226 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Xfasm12_2227 PF00731 AIR carboxylase Xfasm12_2231 PF07731 Multicopper oxidase Xfasm12_2231 PF07732 Multicopper oxidase Xfasm12_2233 PF13361 UvrD-like helicase C-terminal domain Xfasm12_2233 PF00580 UvrD/REP helicase N-terminal domain Xfasm12_2234 PF04349 Periplasmic glucan biosynthesis protein, MdoG Xfasm12_2235 PF01343 Peptidase family S49 Xfasm12_2236 PF01554 MatE Xfasm12_2239 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Xfasm12_2239 PF18074 Primosomal protein N C-terminal domain Xfasm12_2239 PF00271 Helicase conserved C-terminal domain Xfasm12_2239 PF00270 DEAD/DEAH box helicase Xfasm12_2239 PF17764 3′ DNA-binding domain (3′BD) Xfasm12_2240 PF04542 Sigma-70 region 2 Xfasm12_2240 PF04545 Sigma-70, region 4 Xfasm12_2241 PF03167 Uracil DNA glycosylase superfamily Xfasm12_2242 PF01339 CheB methylesterase Xfasm12_2242 PF00072 Response regulator receiver domain Xfasm12_2243 PF18075 FtsX extracellular domain Xfasm12_2244 PF00005 ABC transporter Xfasm12_2245 PF00271 Helicase conserved C-terminal domain Xfasm12_2245 PF12300 ATP-dependent RNA helicase RhlB Xfasm12_2245 PF00270 DEAD/DEAH box helicase Xfasm12_2247 PF00085 Thioredoxin Xfasm12_2249 PF03971 Monomeric isocitrate dehydrogenase Xfasm12_2252 PF03572 Peptidase family S41 Xfasm12_2252 PF13180 PDZ domain Xfasm12_2253 PF01551 Peptidase family M23 Xfasm12_2256 PF00150 Cellulase (glycosyl hydrolase family 5) Xfasm12_2257 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Xfasm12_2257 PF07992 Pyridine nucleotide-disulphide oxidoreductase Xfasm12_2258 PF01493 GXGXG motif Xfasm12_2258 PF00310 Glutamine amidotransferases class-II Xfasm12_2258 PF01645 Conserved region in glutamate synthase Xfasm12_2258 PF04898 Glutamate synthase central domain Xfasm12_2260 PF14748 Pyrroline-5-carboxylate reductase dimerisation Xfasm12_2260 PF03807 NADP oxidoreductase coenzyme F420-dependent Xfasm12_2267 PF18766 SWI2/SNF2 ATPase Xfasm12_2267 PF11867 Domain of unknown function (DUF3387) Xfasm12_2267 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Xfasm12_2269 PF02384 N-6 DNA Methylase Xfasm12_2269 PF12161 HsdM N-terminal domain Xfasm12_2271 PF12008 Type I restriction and modification enzyme - subunit R C terminal Xfasm12_2271 PF18766 SWI2/SNF2 ATPase Xfasm12_2271 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Xfasm12_2272 PF01420 Type I restriction modification DNA specificity domain Xfasm12_2274 PF12161 HsdM N-terminal domain Xfasm12_2274 PF02384 N-6 DNA Methylase Xfasm12_2276 PF01810 LysE type translocator Xfasm12_2278 PF11855 Protein of unknown function (DUF3375) Xfasm12_2283 PF11867 Domain of unknown function (DUF3387) Xfasm12_2283 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Xfasm12_2283 PF18766 SWI2/SNF2 ATPase Xfasm12_2298 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Xfasm12_2298 PF06594 Haemolysin-type calcium binding protein related domain Xfasm12_2302 PF01850 PIN domain Xfasm12_2312 PF01926 50S ribosome-binding GTPase Xfasm12_2312 PF12631 MnmE helical domain Xfasm12_2312 PF10396 GTP-binding protein TrmE N-terminus Xfasm12_2314 PF02096 60Kd inner membrane protein Xfasm12_2314 PF14849 YidC periplasmic domain Xfasm12_2315 PF00825 Ribonuclease P Xfasm12_2316 PF00468 Ribosomal protein L34