locus-tag class description IUD25_00005 PF11638 DnaA N-terminal domain IUD25_00005 PF00308 Bacterial dnaA protein IUD25_00005 PF08299 Bacterial dnaA protein helix-turn-helix IUD25_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain IUD25_00010 PF02767 DNA polymerase III beta subunit, central domain IUD25_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain IUD25_00015 PF02463 RecF/RecN/SMC N terminal domain IUD25_00020 PF00986 DNA gyrase B subunit, carboxyl terminus IUD25_00020 PF00204 DNA gyrase B IUD25_00020 PF01751 Toprim domain IUD25_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_00020 PF18053 DNA gyrase B subunit insert domain IUD25_00030 PF01435 Peptidase family M48 IUD25_00040 PF03544 Gram-negative bacterial TonB protein C-terminal IUD25_00045 PF01618 MotA/TolQ/ExbB proton channel family IUD25_00050 PF02472 Biopolymer transport protein ExbD/TolR IUD25_00055 PF02472 Biopolymer transport protein ExbD/TolR IUD25_00060 PF00326 Prolyl oligopeptidase family IUD25_00060 PF07676 WD40-like Beta Propeller Repeat IUD25_00070 PF01218 Coproporphyrinogen III oxidase IUD25_00090 PF00793 DAHP synthetase I family IUD25_00115 PF05567 Neisseria PilC beta-propeller domain IUD25_00125 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IUD25_00130 PF00155 Aminotransferase class I and II IUD25_00135 PF01741 Large-conductance mechanosensitive channel, MscL IUD25_00150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IUD25_00160 PF02559 CarD-like/TRCF domain IUD25_00160 PF00270 DEAD/DEAH box helicase IUD25_00160 PF00271 Helicase conserved C-terminal domain IUD25_00160 PF03461 TRCF domain IUD25_00160 PF17757 UvrB interaction domain IUD25_00165 PF01220 Dehydroquinase class II IUD25_00170 PF00364 Biotin-requiring enzyme IUD25_00175 PF02785 Biotin carboxylase C-terminal domain IUD25_00175 PF00289 Biotin carboxylase, N-terminal domain IUD25_00175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUD25_00180 PF00580 UvrD/REP helicase N-terminal domain IUD25_00180 PF13361 UvrD-like helicase C-terminal domain IUD25_00185 PF00970 Oxidoreductase FAD-binding domain IUD25_00185 PF00042 Globin IUD25_00185 PF00175 Oxidoreductase NAD-binding domain IUD25_00195 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IUD25_00200 PF06613 KorB C-terminal beta-barrel domain IUD25_00200 PF08535 KorB domain IUD25_00200 PF02195 ParB-like nuclease domain IUD25_00210 PF00156 Phosphoribosyl transferase domain IUD25_00215 PF06968 Biotin and Thiamin Synthesis associated domain IUD25_00215 PF04055 Radical SAM superfamily IUD25_00220 PF01734 Patatin-like phospholipase IUD25_00225 PF01040 UbiA prenyltransferase family IUD25_00260 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IUD25_00260 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IUD25_00265 PF01578 Cytochrome C assembly protein IUD25_00270 PF00448 SRP54-type protein, GTPase domain IUD25_00270 PF02881 SRP54-type protein, helical bundle domain IUD25_00270 PF02978 Signal peptide binding domain IUD25_00290 PF00577 Outer membrane usher protein IUD25_00290 PF13954 PapC N-terminal domain IUD25_00290 PF13953 PapC C-terminal domain IUD25_00295 PF02753 Pili assembly chaperone PapD, C-terminal domain IUD25_00295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUD25_00300 PF16970 Type-1 fimbrial protein, A IUD25_00310 PF02464 Competence-damaged protein IUD25_00315 PF00083 Sugar (and other) transporter IUD25_00320 PF16360 GTP-binding GTPase Middle Region IUD25_00320 PF13167 GTP-binding GTPase N-terminal IUD25_00320 PF01926 50S ribosome-binding GTPase IUD25_00325 PF17209 Hfq protein IUD25_00335 PF00809 Pterin binding enzyme IUD25_00340 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_00340 PF06480 FtsH Extracellular IUD25_00340 PF17862 AAA+ lid domain IUD25_00340 PF01434 Peptidase family M41 IUD25_00345 PF01728 FtsJ-like methyltransferase IUD25_00350 PF01985 CRS1 / YhbY (CRM) domain IUD25_00360 PF00920 Dehydratase family IUD25_00380 PF03279 Bacterial lipid A biosynthesis acyltransferase IUD25_00385 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IUD25_00395 PF00886 Ribosomal protein S16 IUD25_00400 PF01782 RimM N-terminal domain IUD25_00400 PF05239 PRC-barrel domain IUD25_00405 PF01746 tRNA (Guanine-1)-methyltransferase IUD25_00410 PF01245 Ribosomal protein L19 IUD25_00415 PF00557 Metallopeptidase family M24 IUD25_00420 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_00420 PF14602 Hexapeptide repeat of succinyl-transferase IUD25_00420 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IUD25_00425 PF03960 ArsC family IUD25_00430 PF07687 Peptidase dimerisation domain IUD25_00430 PF01546 Peptidase family M20/M25/M40 IUD25_00435 PF13537 Glutamine amidotransferase domain IUD25_00435 PF00733 Asparagine synthase IUD25_00445 PF03060 Nitronate monooxygenase IUD25_00450 PF00717 Peptidase S24-like IUD25_00450 PF01726 LexA DNA binding domain IUD25_00455 PF00154 recA bacterial DNA recombination protein IUD25_00460 PF02272 DHHA1 domain IUD25_00460 PF01411 tRNA synthetases class II (A) IUD25_00460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUD25_00465 PF02599 Global regulator protein family IUD25_00475 PF01432 Peptidase family M3 IUD25_00490 PF07731 Multicopper oxidase IUD25_00490 PF07732 Multicopper oxidase IUD25_00490 PF00394 Multicopper oxidase IUD25_00495 PF05275 Copper resistance protein B precursor (CopB) IUD25_00500 PF10458 Valyl tRNA synthetase tRNA binding arm IUD25_00500 PF08264 Anticodon-binding domain of tRNA IUD25_00500 PF00133 tRNA synthetases class I (I, L, M and V) IUD25_00515 PF00883 Cytosol aminopeptidase family, catalytic domain IUD25_00515 PF02789 Cytosol aminopeptidase family, N-terminal domain IUD25_00520 PF03739 Lipopolysaccharide export system permease LptF/LptG IUD25_00535 PF01380 SIS domain IUD25_00545 PF17284 Spermidine synthase tetramerisation domain IUD25_00550 PF17810 Arginine decarboxylase helical bundle domain IUD25_00550 PF17944 Arginine decarboxylase C-terminal helical extension IUD25_00550 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUD25_00555 PF00106 short chain dehydrogenase IUD25_00565 PF03485 Arginyl tRNA synthetase N terminal domain IUD25_00565 PF05746 DALR anticodon binding domain IUD25_00565 PF00750 tRNA synthetases class I (R) IUD25_00570 PF04002 RadC-like JAB domain IUD25_00575 PF02441 Flavoprotein IUD25_00575 PF04127 DNA / pantothenate metabolism flavoprotein IUD25_00580 PF00692 dUTPase IUD25_00585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUD25_00585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUD25_00585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUD25_00585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUD25_00595 PF00156 Phosphoribosyl transferase domain IUD25_00625 PF07690 Major Facilitator Superfamily IUD25_00630 PF03702 Anhydro-N-acetylmuramic acid kinase IUD25_00635 PF04225 Opacity-associated protein A LysM-like domain IUD25_00635 PF01551 Peptidase family M23 IUD25_00640 PF00579 tRNA synthetases class I (W and Y) IUD25_00675 PF01578 Cytochrome C assembly protein IUD25_00690 PF00009 Elongation factor Tu GTP binding domain IUD25_00690 PF16658 Class II release factor RF3, C-terminal domain IUD25_00695 PF03006 Haemolysin-III related IUD25_00700 PF00535 Glycosyl transferase family 2 IUD25_00705 PF01026 TatD related DNase IUD25_00720 PF01597 Glycine cleavage H-protein IUD25_00725 PF08669 Glycine cleavage T-protein C-terminal barrel domain IUD25_00725 PF01571 Aminomethyltransferase folate-binding domain IUD25_00735 PF16200 C-terminal region of band_7 IUD25_00735 PF01145 SPFH domain / Band 7 family IUD25_00740 PF03819 MazG nucleotide pyrophosphohydrolase domain IUD25_00745 PF00459 Inositol monophosphatase family IUD25_00750 PF00293 NUDIX domain IUD25_00755 PF00202 Aminotransferase class-III IUD25_00760 PF04452 RNA methyltransferase IUD25_00765 PF00270 DEAD/DEAH box helicase IUD25_00765 PF00271 Helicase conserved C-terminal domain IUD25_00770 PF01242 6-pyruvoyl tetrahydropterin synthase IUD25_00795 PF03653 Uncharacterised protein family (UPF0093) IUD25_00800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IUD25_00805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUD25_00805 PF02811 PHP domain IUD25_00805 PF01336 OB-fold nucleic acid binding domain IUD25_00805 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUD25_00805 PF14579 Helix-hairpin-helix motif IUD25_00810 PF01259 SAICAR synthetase IUD25_00815 PF00684 DnaJ central domain IUD25_00815 PF01556 DnaJ C terminal domain IUD25_00815 PF00226 DnaJ domain IUD25_00820 PF00834 Ribulose-phosphate 3 epimerase family IUD25_00825 PF04715 Anthranilate synthase component I, N terminal region IUD25_00825 PF00425 chorismate binding enzyme IUD25_00830 PF00117 Glutamine amidotransferase class-I IUD25_00835 PF02885 Glycosyl transferase family, helical bundle domain IUD25_00835 PF00591 Glycosyl transferase family, a/b domain IUD25_00840 PF00218 Indole-3-glycerol phosphate synthase IUD25_00865 PF00557 Metallopeptidase family M24 IUD25_00865 PF01321 Creatinase/Prolidase N-terminal domain IUD25_00880 PF01702 Queuine tRNA-ribosyltransferase IUD25_00885 PF02699 Preprotein translocase subunit IUD25_00890 PF13721 SecD export protein N-terminal TM region IUD25_00890 PF02355 Protein export membrane protein IUD25_00890 PF07549 SecD/SecF GG Motif IUD25_00895 PF07549 SecD/SecF GG Motif IUD25_00895 PF02355 Protein export membrane protein IUD25_00905 PF01743 Poly A polymerase head domain IUD25_00905 PF12627 Probable RNA and SrmB- binding site of polymerase A IUD25_00905 PF12626 Polymerase A arginine-rich C-terminus IUD25_00910 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUD25_00915 PF02548 Ketopantoate hydroxymethyltransferase IUD25_00920 PF02569 Pantoate-beta-alanine ligase IUD25_00925 PF02261 Aspartate decarboxylase IUD25_00930 PF00342 Phosphoglucose isomerase IUD25_00940 PF02576 RimP N-terminal domain IUD25_00940 PF17384 RimP C-terminal SH3 domain IUD25_00945 PF13184 NusA-like KH domain IUD25_00945 PF08529 NusA N-terminal domain IUD25_00945 PF00575 S1 RNA binding domain IUD25_00950 PF11987 Translation-initiation factor 2 IUD25_00950 PF08364 Bacterial translation initiation factor IF-2 associated region IUD25_00950 PF04760 Translation initiation factor IF-2, N-terminal region IUD25_00950 PF00009 Elongation factor Tu GTP binding domain IUD25_00955 PF02033 Ribosome-binding factor A IUD25_00960 PF09157 Pseudouridine synthase II TruB, C-terminal IUD25_00960 PF01509 TruB family pseudouridylate synthase (N terminal domain) IUD25_00960 PF16198 tRNA pseudouridylate synthase B C-terminal domain IUD25_00965 PF00312 Ribosomal protein S15 IUD25_00970 PF00575 S1 RNA binding domain IUD25_00970 PF01138 3' exoribonuclease family, domain 1 IUD25_00970 PF03725 3' exoribonuclease family, domain 2 IUD25_00970 PF00013 KH domain IUD25_00970 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IUD25_00975 PF01638 HxlR-like helix-turn-helix IUD25_00980 PF05368 NmrA-like family IUD25_00990 PF00873 AcrB/AcrD/AcrF family IUD25_01010 PF00271 Helicase conserved C-terminal domain IUD25_01010 PF03880 DbpA RNA binding domain IUD25_01010 PF00270 DEAD/DEAH box helicase IUD25_01020 PF00766 Electron transfer flavoprotein FAD-binding domain IUD25_01020 PF01012 Electron transfer flavoprotein domain IUD25_01025 PF01012 Electron transfer flavoprotein domain IUD25_01030 PF16363 GDP-mannose 4,6 dehydratase IUD25_01035 PF00483 Nucleotidyl transferase IUD25_01040 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IUD25_01045 PF04321 RmlD substrate binding domain IUD25_01050 PF00483 Nucleotidyl transferase IUD25_01050 PF01050 Mannose-6-phosphate isomerase IUD25_01055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUD25_01055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUD25_01055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUD25_01055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUD25_01075 PF03797 Autotransporter beta-domain IUD25_01075 PF12951 Passenger-associated-transport-repeat IUD25_01075 PF00082 Subtilase family IUD25_01080 PF06779 Uncharacterised MFS-type transporter YbfB IUD25_01090 PF00365 Phosphofructokinase IUD25_01100 PF08245 Mur ligase middle domain IUD25_01100 PF02875 Mur ligase family, glutamate ligase domain IUD25_01100 PF01225 Mur ligase family, catalytic domain IUD25_01105 PF01569 PAP2 superfamily IUD25_01120 PF02789 Cytosol aminopeptidase family, N-terminal domain IUD25_01120 PF00883 Cytosol aminopeptidase family, catalytic domain IUD25_01125 PF01594 AI-2E family transporter IUD25_01145 PF00595 PDZ domain IUD25_01150 PF01370 NAD dependent epimerase/dehydratase family IUD25_01150 PF08338 Domain of unknown function (DUF1731) IUD25_01155 PF13193 AMP-binding enzyme C-terminal domain IUD25_01155 PF00501 AMP-binding enzyme IUD25_01160 PF00694 Aconitase C-terminal domain IUD25_01160 PF00330 Aconitase family (aconitate hydratase) IUD25_01175 PF11791 Aconitate B N-terminal domain IUD25_01175 PF06434 Aconitate hydratase 2 N-terminus IUD25_01175 PF00330 Aconitase family (aconitate hydratase) IUD25_01220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUD25_01230 PF00121 Triosephosphate isomerase IUD25_01245 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IUD25_01250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUD25_01255 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IUD25_01260 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IUD25_01270 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUD25_01270 PF10531 SLBB domain IUD25_01270 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUD25_01275 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUD25_01275 PF00384 Molybdopterin oxidoreductase IUD25_01275 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IUD25_01280 PF00146 NADH dehydrogenase IUD25_01285 PF12838 4Fe-4S dicluster domain IUD25_01290 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IUD25_01295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IUD25_01300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IUD25_01300 PF00361 Proton-conducting membrane transporter IUD25_01305 PF00361 Proton-conducting membrane transporter IUD25_01305 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IUD25_01310 PF00361 Proton-conducting membrane transporter IUD25_01315 PF00106 short chain dehydrogenase IUD25_01320 PF03600 Citrate transporter IUD25_01330 PF00072 Response regulator receiver domain IUD25_01330 PF00486 Transcriptional regulatory protein, C terminal IUD25_01335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_01335 PF08521 Two-component sensor kinase N-terminal IUD25_01335 PF00512 His Kinase A (phospho-acceptor) domain IUD25_01345 PF00196 Bacterial regulatory proteins, luxR family IUD25_01345 PF00072 Response regulator receiver domain IUD25_01350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_01350 PF00512 His Kinase A (phospho-acceptor) domain IUD25_01350 PF09456 RcsC Alpha-Beta-Loop (ABL) IUD25_01350 PF00072 Response regulator receiver domain IUD25_01365 PF00375 Sodium:dicarboxylate symporter family IUD25_01370 PF01515 Phosphate acetyl/butaryl transferase IUD25_01370 PF03949 Malic enzyme, NAD binding domain IUD25_01370 PF00390 Malic enzyme, N-terminal domain IUD25_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_01375 PF00183 Hsp90 protein IUD25_01385 PF01467 Cytidylyltransferase-like IUD25_01400 PF00037 4Fe-4S binding domain IUD25_01410 PF00990 Diguanylate cyclase, GGDEF domain IUD25_01415 PF08460 Bacterial SH3 domain IUD25_01415 PF01551 Peptidase family M23 IUD25_01420 PF01979 Amidohydrolase family IUD25_01425 PF01809 Putative membrane protein insertion efficiency factor IUD25_01430 PF01258 Prokaryotic dksA/traR C4-type zinc finger IUD25_01440 PF05977 Transmembrane secretion effector IUD25_01445 PF02657 Fe-S metabolism associated domain IUD25_01450 PF01406 tRNA synthetases class I (C) catalytic domain IUD25_01450 PF09190 DALR domain IUD25_01465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUD25_01465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUD25_01470 PF00764 Arginosuccinate synthase IUD25_01475 PF01546 Peptidase family M20/M25/M40 IUD25_01475 PF07687 Peptidase dimerisation domain IUD25_01480 PF00696 Amino acid kinase family IUD25_01480 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase IUD25_01485 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUD25_01490 PF00206 Lyase IUD25_01495 PF01472 PUA domain IUD25_01495 PF00696 Amino acid kinase family IUD25_01500 PF00171 Aldehyde dehydrogenase family IUD25_01545 PF14437 MafB19-like deaminase IUD25_01550 PF01325 Iron dependent repressor, N-terminal DNA binding domain IUD25_01550 PF02742 Iron dependent repressor, metal binding and dimerisation domain IUD25_01555 PF01566 Natural resistance-associated macrophage protein IUD25_01560 PF04376 Arginine-tRNA-protein transferase, N terminus IUD25_01560 PF04377 Arginine-tRNA-protein transferase, C terminus IUD25_01580 PF03797 Autotransporter beta-domain IUD25_01580 PF00082 Subtilase family IUD25_01580 PF12951 Passenger-associated-transport-repeat IUD25_01595 PF01553 Acyltransferase IUD25_01610 PF05221 S-adenosyl-L-homocysteine hydrolase IUD25_01610 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IUD25_01620 PF01351 Ribonuclease HII IUD25_01625 PF02684 Lipid-A-disaccharide synthetase IUD25_01630 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_01630 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IUD25_01635 PF07977 FabA-like domain IUD25_01640 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_01640 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IUD25_01645 PF01103 Surface antigen IUD25_01645 PF07244 Surface antigen variable number repeat IUD25_01650 PF02163 Peptidase family M50 IUD25_01650 PF17820 PDZ domain IUD25_01655 PF13288 DXP reductoisomerase C-terminal domain IUD25_01655 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IUD25_01655 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IUD25_01665 PF01255 Putative undecaprenyl diphosphate synthase IUD25_01670 PF01765 Ribosome recycling factor IUD25_01695 PF00696 Amino acid kinase family IUD25_01725 PF01081 KDPG and KHG aldolase IUD25_01730 PF00920 Dehydratase family IUD25_01735 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IUD25_01740 PF02685 Glucokinase IUD25_01745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IUD25_01745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IUD25_01750 PF17912 MalK OB fold domain IUD25_01750 PF00005 ABC transporter IUD25_01755 PF01571 Aminomethyltransferase folate-binding domain IUD25_01765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUD25_01770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUD25_01775 PF00890 FAD binding domain IUD25_01775 PF02910 Fumarate reductase flavoprotein C-term IUD25_01780 PF13085 2Fe-2S iron-sulfur cluster binding domain IUD25_01785 PF03937 Flavinator of succinate dehydrogenase IUD25_01795 PF12704 MacB-like periplasmic core domain IUD25_01795 PF02687 FtsX-like permease family IUD25_01800 PF00005 ABC transporter IUD25_01805 PF00753 Metallo-beta-lactamase superfamily IUD25_01805 PF03772 Competence protein IUD25_01810 PF01618 MotA/TolQ/ExbB proton channel family IUD25_01820 PF00005 ABC transporter IUD25_01820 PF00664 ABC transporter transmembrane region IUD25_01825 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IUD25_01860 PF01381 Helix-turn-helix IUD25_01865 PF15723 Motility quorum-sensing regulator, toxin of MqsA IUD25_01870 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA IUD25_01935 PF00589 Phage integrase family IUD25_01935 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_01950 PF04264 YceI-like domain IUD25_01955 PF13091 PLD-like domain IUD25_01970 PF03358 NADPH-dependent FMN reductase IUD25_01975 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IUD25_01975 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IUD25_01990 PF01367 5'-3' exonuclease, C-terminal SAM fold IUD25_01990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUD25_01990 PF00476 DNA polymerase family A IUD25_01990 PF01612 3'-5' exonuclease IUD25_02000 PF05173 Dihydrodipicolinate reductase, C-terminus IUD25_02000 PF01113 Dihydrodipicolinate reductase, N-terminus IUD25_02005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IUD25_02005 PF00117 Glutamine amidotransferase class-I IUD25_02010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IUD25_02010 PF02142 MGS-like domain IUD25_02010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUD25_02015 PF01272 Transcription elongation factor, GreA/GreB, C-term IUD25_02015 PF03449 Transcription elongation factor, N-terminal IUD25_02025 PF01368 DHH family IUD25_02025 PF02272 DHHA1 domain IUD25_02025 PF17768 RecJ OB domain IUD25_02035 PF01336 OB-fold nucleic acid binding domain IUD25_02035 PF00152 tRNA synthetases class II (D, K and N) IUD25_02040 PF00072 Response regulator receiver domain IUD25_02045 PF00512 His Kinase A (phospho-acceptor) domain IUD25_02045 PF00072 Response regulator receiver domain IUD25_02045 PF01627 Hpt domain IUD25_02045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_02050 PF00378 Enoyl-CoA hydratase/isomerase IUD25_02055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUD25_02055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUD25_02065 PF08245 Mur ligase middle domain IUD25_02075 PF00293 NUDIX domain IUD25_02080 PF02219 Methylenetetrahydrofolate reductase IUD25_02090 PF02545 Maf-like protein IUD25_02095 PF00575 S1 RNA binding domain IUD25_02095 PF10150 Ribonuclease E/G family IUD25_02105 PF01523 Putative modulator of DNA gyrase IUD25_02110 PF04751 Protein of unknown function (DUF615) IUD25_02115 PF01523 Putative modulator of DNA gyrase IUD25_02120 PF03466 LysR substrate binding domain IUD25_02120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUD25_02135 PF08240 Alcohol dehydrogenase GroES-like domain IUD25_02135 PF00107 Zinc-binding dehydrogenase IUD25_02145 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_02145 PF14602 Hexapeptide repeat of succinyl-transferase IUD25_02145 PF12804 MobA-like NTP transferase domain IUD25_02155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IUD25_02155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IUD25_02160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUD25_02160 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUD25_02165 PF00231 ATP synthase IUD25_02170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUD25_02170 PF00306 ATP synthase alpha/beta chain, C terminal domain IUD25_02170 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUD25_02175 PF00213 ATP synthase delta (OSCP) subunit IUD25_02180 PF00430 ATP synthase B/B' CF(0) IUD25_02185 PF00137 ATP synthase subunit C IUD25_02190 PF00119 ATP synthase A chain IUD25_02205 PF00338 Ribosomal protein S10p/S20e IUD25_02210 PF00297 Ribosomal protein L3 IUD25_02215 PF00573 Ribosomal protein L4/L1 family IUD25_02220 PF00276 Ribosomal protein L23 IUD25_02225 PF00181 Ribosomal Proteins L2, RNA binding domain IUD25_02225 PF03947 Ribosomal Proteins L2, C-terminal domain IUD25_02230 PF00203 Ribosomal protein S19 IUD25_02235 PF00237 Ribosomal protein L22p/L17e IUD25_02240 PF07650 KH domain IUD25_02240 PF00189 Ribosomal protein S3, C-terminal domain IUD25_02245 PF00252 Ribosomal protein L16p/L10e IUD25_02250 PF00831 Ribosomal L29 protein IUD25_02255 PF00366 Ribosomal protein S17 IUD25_02260 PF00238 Ribosomal protein L14p/L23e IUD25_02265 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IUD25_02265 PF00467 KOW motif IUD25_02270 PF00281 Ribosomal protein L5 IUD25_02270 PF00673 ribosomal L5P family C-terminus IUD25_02275 PF00253 Ribosomal protein S14p/S29e IUD25_02280 PF00410 Ribosomal protein S8 IUD25_02285 PF00347 Ribosomal protein L6 IUD25_02290 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IUD25_02295 PF00333 Ribosomal protein S5, N-terminal domain IUD25_02295 PF03719 Ribosomal protein S5, C-terminal domain IUD25_02300 PF00327 Ribosomal protein L30p/L7e IUD25_02305 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IUD25_02310 PF00344 SecY translocase IUD25_02315 PF00416 Ribosomal protein S13/S18 IUD25_02320 PF00411 Ribosomal protein S11 IUD25_02325 PF01479 S4 domain IUD25_02325 PF00163 Ribosomal protein S4/S9 N-terminal domain IUD25_02330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IUD25_02330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IUD25_02330 PF01000 RNA polymerase Rpb3/RpoA insert domain IUD25_02335 PF01196 Ribosomal protein L17 IUD25_02340 PF04380 Membrane fusogenic activity IUD25_02345 PF01078 Magnesium chelatase, subunit ChlI IUD25_02345 PF13335 Magnesium chelatase, subunit ChlI C-terminal IUD25_02355 PF00561 alpha/beta hydrolase fold IUD25_02360 PF03280 Proteobacterial lipase chaperone protein IUD25_02370 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUD25_02370 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUD25_02370 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUD25_02385 PF05698 Bacterial trigger factor protein (TF) C-terminus IUD25_02385 PF05697 Bacterial trigger factor protein (TF) IUD25_02390 PF00574 Clp protease IUD25_02395 PF06689 ClpX C4-type zinc finger IUD25_02395 PF10431 C-terminal, D2-small domain, of ClpB protein IUD25_02395 PF07724 AAA domain (Cdc48 subfamily) IUD25_02400 PF05362 Lon protease (S16) C-terminal proteolytic domain IUD25_02400 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_02400 PF02190 ATP-dependent protease La (LON) substrate-binding domain IUD25_02405 PF00216 Bacterial DNA-binding protein IUD25_02430 PF02867 Ribonucleotide reductase, barrel domain IUD25_02430 PF00317 Ribonucleotide reductase, all-alpha domain IUD25_02430 PF03477 ATP cone domain IUD25_02435 PF00268 Ribonucleotide reductase, small chain IUD25_02450 PF00849 RNA pseudouridylate synthase IUD25_02450 PF01479 S4 domain IUD25_02455 PF13419 Haloacid dehalogenase-like hydrolase IUD25_02465 PF00830 Ribosomal L28 family IUD25_02470 PF00471 Ribosomal protein L33 IUD25_02475 PF13091 PLD-like domain IUD25_02475 PF13396 Phospholipase_D-nuclease N-terminal IUD25_02480 PF00043 Glutathione S-transferase, C-terminal domain IUD25_02480 PF02798 Glutathione S-transferase, N-terminal domain IUD25_02485 PF00056 lactate/malate dehydrogenase, NAD binding domain IUD25_02485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IUD25_02490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUD25_02495 PF00009 Elongation factor Tu GTP binding domain IUD25_02495 PF00679 Elongation factor G C-terminus IUD25_02495 PF03144 Elongation factor Tu domain 2 IUD25_02505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUD25_02505 PF00529 HlyD membrane-fusion protein of T1SS IUD25_02530 PF00664 ABC transporter transmembrane region IUD25_02530 PF03412 Peptidase C39 family IUD25_02530 PF00005 ABC transporter IUD25_02535 PF01061 ABC-2 type transporter IUD25_02540 PF00005 ABC transporter IUD25_02545 PF05567 Neisseria PilC beta-propeller domain IUD25_02560 PF00270 DEAD/DEAH box helicase IUD25_02560 PF04408 Helicase associated domain (HA2) IUD25_02560 PF00271 Helicase conserved C-terminal domain IUD25_02560 PF08482 ATP-dependent helicase C-terminal IUD25_02570 PF13185 GAF domain IUD25_02575 PF17243 POTRA domain TamA domain 1 IUD25_02575 PF01103 Surface antigen IUD25_02580 PF04357 TamB, inner membrane protein subunit of TAM complex IUD25_02590 PF00589 Phage integrase family IUD25_02705 PF04303 PrpF protein IUD25_02730 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IUD25_02730 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IUD25_02730 PF17962 Bacterial macroglobulin domain 6 IUD25_02730 PF01835 MG2 domain IUD25_02730 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IUD25_02730 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IUD25_02730 PF00207 Alpha-2-macroglobulin family IUD25_02730 PF07703 Alpha-2-macroglobulin bait region domain IUD25_02735 PF07859 alpha/beta hydrolase fold IUD25_02740 PF12852 Cupin IUD25_02740 PF12833 Helix-turn-helix domain IUD25_02750 PF00929 Exonuclease IUD25_02755 PF05552 Conserved TM helix IUD25_02755 PF00924 Mechanosensitive ion channel IUD25_02760 PF00391 PEP-utilising enzyme, mobile domain IUD25_02760 PF02896 PEP-utilising enzyme, TIM barrel domain IUD25_02760 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUD25_02765 PF03618 Kinase/pyrophosphorylase IUD25_02785 PF00041 Fibronectin type III domain IUD25_02785 PF00553 Cellulose binding domain IUD25_02785 PF01341 Glycosyl hydrolases family 6 IUD25_02790 PF04055 Radical SAM superfamily IUD25_02790 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IUD25_02795 PF03099 Biotin/lipoate A/B protein ligase family IUD25_02800 PF04359 Protein of unknown function (DUF493) IUD25_02820 PF04286 Protein of unknown function (DUF445) IUD25_02825 PF01595 Cyclin M transmembrane N-terminal domain IUD25_02825 PF03471 Transporter associated domain IUD25_02825 PF00571 CBS domain IUD25_02840 PF00204 DNA gyrase B IUD25_02840 PF00986 DNA gyrase B subunit, carboxyl terminus IUD25_02840 PF01751 Toprim domain IUD25_02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_02850 PF06418 CTP synthase N-terminus IUD25_02850 PF00117 Glutamine amidotransferase class-I IUD25_02855 PF00793 DAHP synthetase I family IUD25_02860 PF00113 Enolase, C-terminal TIM barrel domain IUD25_02860 PF03952 Enolase, N-terminal domain IUD25_02865 PF04977 Septum formation initiator IUD25_02870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IUD25_02875 PF02542 YgbB family IUD25_02880 PF01713 Smr domain IUD25_02905 PF02470 MlaD protein IUD25_02905 PF03886 ABC-type transport auxiliary lipoprotein component IUD25_02910 PF00005 ABC transporter IUD25_02915 PF02405 Permease MlaE IUD25_02955 PF04085 rod shape-determining protein MreC IUD25_02960 PF04093 rod shape-determining protein MreD IUD25_02965 PF00905 Penicillin binding protein transpeptidase domain IUD25_02965 PF03717 Penicillin-binding Protein dimerisation domain IUD25_02970 PF01098 Cell cycle protein IUD25_02975 PF02547 Queuosine biosynthesis protein IUD25_02980 PF13291 ACT domain IUD25_02980 PF02824 TGS domain IUD25_02980 PF04607 Region found in RelA / SpoT proteins IUD25_02995 PF03776 Septum formation topological specificity factor MinE IUD25_03000 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUD25_03005 PF03775 Septum formation inhibitor MinC, C-terminal domain IUD25_03005 PF05209 Septum formation inhibitor MinC, N-terminal domain IUD25_03020 PF00730 HhH-GPD superfamily base excision DNA repair protein IUD25_03035 PF04264 YceI-like domain IUD25_03040 PF00672 HAMP domain IUD25_03040 PF00072 Response regulator receiver domain IUD25_03040 PF00512 His Kinase A (phospho-acceptor) domain IUD25_03040 PF01627 Hpt domain IUD25_03040 PF17149 Periplasmic sensor domain found in signal transduction proteins IUD25_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_03045 PF00145 C-5 cytosine-specific DNA methylase IUD25_03060 PF01208 Uroporphyrinogen decarboxylase (URO-D) IUD25_03065 PF01761 3-dehydroquinate synthase IUD25_03070 PF01202 Shikimate kinase IUD25_03075 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IUD25_03075 PF01243 Pyridoxamine 5'-phosphate oxidase IUD25_03080 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUD25_03080 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IUD25_03090 PF03932 CutC family IUD25_03105 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_03110 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_03115 PF12857 TOBE-like domain IUD25_03115 PF00005 ABC transporter IUD25_03125 PF04539 Sigma-70 region 3 IUD25_03125 PF04546 Sigma-70, non-essential region IUD25_03125 PF04545 Sigma-70, region 4 IUD25_03125 PF03979 Sigma-70 factor, region 1.1 IUD25_03125 PF00140 Sigma-70 factor, region 1.2 IUD25_03125 PF04542 Sigma-70 region 2 IUD25_03130 PF00521 DNA gyrase/topoisomerase IV, subunit A IUD25_03130 PF03989 DNA gyrase C-terminal domain, beta-propeller IUD25_03135 PF01047 MarR family IUD25_03145 PF12697 Alpha/beta hydrolase family IUD25_03150 PF00155 Aminotransferase class I and II IUD25_03160 PF01040 UbiA prenyltransferase family IUD25_03170 PF12627 Probable RNA and SrmB- binding site of polymerase A IUD25_03170 PF01966 HD domain IUD25_03170 PF01743 Poly A polymerase head domain IUD25_03175 PF01464 Transglycosylase SLT domain IUD25_03175 PF14718 Soluble lytic murein transglycosylase L domain IUD25_03180 PF02666 Phosphatidylserine decarboxylase IUD25_03185 PF02630 SCO1/SenC IUD25_03195 PF05175 Methyltransferase small domain IUD25_03200 PF01264 Chorismate synthase IUD25_03210 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUD25_03210 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUD25_03220 PF01416 tRNA pseudouridine synthase IUD25_03225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IUD25_03230 PF00291 Pyridoxal-phosphate dependent enzyme IUD25_03235 PF00290 Tryptophan synthase alpha chain IUD25_03240 PF18073 Rubredoxin metal binding domain IUD25_03245 PF00296 Luciferase-like monooxygenase IUD25_03255 PF00271 Helicase conserved C-terminal domain IUD25_03255 PF00570 HRDC domain IUD25_03255 PF09382 RQC domain IUD25_03255 PF00270 DEAD/DEAH box helicase IUD25_03255 PF16124 RecQ zinc-binding IUD25_03260 PF00210 Ferritin-like domain IUD25_03265 PF11898 Domain of unknown function (DUF3418) IUD25_03265 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IUD25_03265 PF04408 Helicase associated domain (HA2) IUD25_03265 PF00270 DEAD/DEAH box helicase IUD25_03265 PF00271 Helicase conserved C-terminal domain IUD25_03270 PF02347 Glycine cleavage system P-protein IUD25_03275 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IUD25_03280 PF00510 Cytochrome c oxidase subunit III IUD25_03285 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUD25_03290 PF06481 COX Aromatic Rich Motif IUD25_03290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUD25_03295 PF00348 Polyprenyl synthetase IUD25_03300 PF00436 Single-strand binding protein family IUD25_03320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUD25_03330 PF00391 PEP-utilising enzyme, mobile domain IUD25_03330 PF02896 PEP-utilising enzyme, TIM barrel domain IUD25_03330 PF05524 PEP-utilising enzyme, N-terminal IUD25_03335 PF00381 PTS HPr component phosphorylation site IUD25_03345 PF03668 P-loop ATPase protein family IUD25_03350 PF02603 HPr Serine kinase N terminus IUD25_03350 PF07475 HPr Serine kinase C-terminal domain IUD25_03355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUD25_03360 PF04963 Sigma-54 factor, core binding domain IUD25_03360 PF04552 Sigma-54, DNA binding domain IUD25_03360 PF00309 Sigma-54 factor, Activator interacting domain (AID) IUD25_03365 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUD25_03365 PF00005 ABC transporter IUD25_03385 PF01380 SIS domain IUD25_03385 PF00571 CBS domain IUD25_03390 PF01722 BolA-like protein IUD25_03395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUD25_03425 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IUD25_03425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IUD25_03425 PF02769 AIR synthase related protein, C-terminal domain IUD25_03430 PF13098 Thioredoxin-like domain IUD25_03430 PF10411 Disulfide bond isomerase protein N-terminus IUD25_03435 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_03435 PF00589 Phage integrase family IUD25_03440 PF00520 Ion transport protein IUD25_03440 PF00027 Cyclic nucleotide-binding domain IUD25_03445 PF00202 Aminotransferase class-III IUD25_03450 PF04107 Glutamate-cysteine ligase family 2(GCS2) IUD25_03455 PF01926 50S ribosome-binding GTPase IUD25_03470 PF01323 DSBA-like thioredoxin domain IUD25_03475 PF01323 DSBA-like thioredoxin domain IUD25_03485 PF04356 Protein of unknown function (DUF489) IUD25_03495 PF00293 NUDIX domain IUD25_03500 PF02617 ATP-dependent Clp protease adaptor protein ClpS IUD25_03505 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_03505 PF17871 AAA lid domain IUD25_03505 PF07724 AAA domain (Cdc48 subfamily) IUD25_03505 PF10431 C-terminal, D2-small domain, of ClpB protein IUD25_03505 PF02861 Clp amino terminal domain, pathogenicity island component IUD25_03510 PF01176 Translation initiation factor 1A / IF-1 IUD25_03515 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IUD25_03525 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUD25_03530 PF09397 Ftsk gamma domain IUD25_03530 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IUD25_03530 PF17854 FtsK alpha domain IUD25_03530 PF01580 FtsK/SpoIIIE family IUD25_03540 PF03548 Outer membrane lipoprotein carrier protein LolA IUD25_03545 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_03545 PF12002 MgsA AAA+ ATPase C terminal IUD25_03545 PF16193 AAA C-terminal domain IUD25_03550 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUD25_03555 PF00512 His Kinase A (phospho-acceptor) domain IUD25_03555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_03560 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUD25_03580 PF02685 Glucokinase IUD25_03590 PF07690 Major Facilitator Superfamily IUD25_03595 PF00356 Bacterial regulatory proteins, lacI family IUD25_03600 PF01380 SIS domain IUD25_03605 PF01979 Amidohydrolase family IUD25_03610 PF17848 Acetyl-coA carboxylase zinc finger domain IUD25_03610 PF01039 Carboxyl transferase domain IUD25_03615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUD25_03615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUD25_03615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUD25_03615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUD25_03620 PF01522 Polysaccharide deacetylase IUD25_03625 PF00534 Glycosyl transferases group 1 IUD25_03625 PF13439 Glycosyltransferase Family 4 IUD25_03635 PF00355 Rieske [2Fe-2S] domain IUD25_03640 PF00266 Aminotransferase class-V IUD25_03645 PF01458 Uncharacterized protein family (UPF0051) IUD25_03650 PF00005 ABC transporter IUD25_03655 PF01458 Uncharacterized protein family (UPF0051) IUD25_03660 PF02082 Transcriptional regulator IUD25_03670 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IUD25_03670 PF00326 Prolyl oligopeptidase family IUD25_03680 PF01678 Diaminopimelate epimerase IUD25_03690 PF00589 Phage integrase family IUD25_03690 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_03695 PF00227 Proteasome subunit IUD25_03700 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_03700 PF10431 C-terminal, D2-small domain, of ClpB protein IUD25_03700 PF07724 AAA domain (Cdc48 subfamily) IUD25_03710 PF01209 ubiE/COQ5 methyltransferase family IUD25_03715 PF11838 ERAP1-like C-terminal domain IUD25_03715 PF01433 Peptidase family M1 domain IUD25_03735 PF13369 Transglutaminase-like superfamily IUD25_03755 PF01507 Phosphoadenosine phosphosulfate reductase family IUD25_03760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUD25_03760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUD25_03765 PF00175 Oxidoreductase NAD-binding domain IUD25_03765 PF00258 Flavodoxin IUD25_03765 PF00667 FAD binding domain IUD25_03770 PF01507 Phosphoadenosine phosphosulfate reductase family IUD25_03775 PF00009 Elongation factor Tu GTP binding domain IUD25_03780 PF01192 RNA polymerase Rpb6 IUD25_03785 PF00625 Guanylate kinase IUD25_03790 PF08340 Domain of unknown function (DUF1732) IUD25_03790 PF03755 YicC-like family, N-terminal region IUD25_03795 PF01138 3' exoribonuclease family, domain 1 IUD25_03795 PF03725 3' exoribonuclease family, domain 2 IUD25_03800 PF01725 Ham1 family IUD25_03805 PF06969 HemN C-terminal domain IUD25_03805 PF04055 Radical SAM superfamily IUD25_03820 PF00561 alpha/beta hydrolase fold IUD25_03825 PF17827 PrmC N-terminal domain IUD25_03825 PF05175 Methyltransferase small domain IUD25_03840 PF05658 Head domain of trimeric autotransporter adhesin IUD25_03840 PF05662 Coiled stalk of trimeric autotransporter adhesin IUD25_03840 PF13018 Extended Signal Peptide of Type V secretion system IUD25_03840 PF03895 YadA-like membrane anchor domain IUD25_03845 PF00437 Type II/IV secretion system protein IUD25_03845 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUD25_03850 PF00482 Type II secretion system (T2SS), protein F IUD25_03860 PF08334 Type II secretion system (T2SS), protein G IUD25_03865 PF12019 Type II transport protein GspH IUD25_03870 PF07963 Prokaryotic N-terminal methylation motif IUD25_03880 PF03934 Type II secretion system (T2SS), protein K IUD25_03885 PF05137 Fimbrial assembly protein (PilN) IUD25_03890 PF10741 Type II secretion system (T2SS), protein M subtype b IUD25_03900 PF03958 Bacterial type II/III secretion system short domain IUD25_03900 PF00263 Bacterial type II and III secretion system protein IUD25_03905 PF05658 Head domain of trimeric autotransporter adhesin IUD25_03905 PF03895 YadA-like membrane anchor domain IUD25_03905 PF05662 Coiled stalk of trimeric autotransporter adhesin IUD25_03905 PF13018 Extended Signal Peptide of Type V secretion system IUD25_03910 PF00578 AhpC/TSA family IUD25_03910 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUD25_03915 PF13192 Thioredoxin domain IUD25_03915 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUD25_03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUD25_03920 PF03466 LysR substrate binding domain IUD25_03925 PF00814 Glycoprotease family IUD25_03930 PF01197 Ribosomal protein L31 IUD25_03935 PF00285 Citrate synthase, C-terminal domain IUD25_03940 PF00380 Ribosomal protein S9/S16 IUD25_03945 PF00572 Ribosomal protein L13 IUD25_03950 PF03232 Ubiquinone biosynthesis protein COQ7 IUD25_03955 PF02675 S-adenosylmethionine decarboxylase IUD25_03960 PF00027 Cyclic nucleotide-binding domain IUD25_03960 PF00325 Bacterial regulatory proteins, crp family IUD25_03980 PF00899 ThiF family IUD25_03990 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUD25_03990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUD25_04000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUD25_04000 PF00364 Biotin-requiring enzyme IUD25_04000 PF02817 e3 binding domain IUD25_04005 PF02779 Transketolase, pyrimidine binding domain IUD25_04005 PF00676 Dehydrogenase E1 component IUD25_04005 PF16870 2-oxoglutarate dehydrogenase C-terminal IUD25_04005 PF16078 2-oxoglutarate dehydrogenase N-terminus IUD25_04010 PF08007 Cupin superfamily protein IUD25_04015 PF08328 Adenylosuccinate lyase C-terminal IUD25_04015 PF00206 Lyase IUD25_04020 PF00206 Lyase IUD25_04020 PF10415 Fumarase C C-terminus IUD25_04025 PF00589 Phage integrase family IUD25_04025 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_04080 PF13932 GidA associated domain IUD25_04080 PF01134 Glucose inhibited division protein A IUD25_04085 PF13932 GidA associated domain IUD25_04085 PF01134 Glucose inhibited division protein A IUD25_04105 PF13649 Methyltransferase domain IUD25_04115 PF02649 Type I GTP cyclohydrolase folE2 IUD25_04120 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_04125 PF00873 AcrB/AcrD/AcrF family IUD25_04130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUD25_04130 PF00529 HlyD membrane-fusion protein of T1SS IUD25_04135 PF05088 Bacterial NAD-glutamate dehydrogenase IUD25_04140 PF01513 ATP-NAD kinase IUD25_04160 PF08401 Domain of unknown function (DUF1738) IUD25_04160 PF13362 Toprim domain IUD25_04160 PF18818 Metallopeptidase superfamily domain IUD25_04165 PF12706 Beta-lactamase superfamily domain IUD25_04175 PF08411 Exonuclease C-terminal IUD25_04175 PF00929 Exonuclease IUD25_04185 PF00999 Sodium/hydrogen exchanger family IUD25_04205 PF01812 5-formyltetrahydrofolate cyclo-ligase family IUD25_04215 PF05164 Cell division protein ZapA IUD25_04225 PF03695 Uncharacterised protein family (UPF0149) IUD25_04230 PF05195 Aminopeptidase P, N-terminal domain IUD25_04230 PF00557 Metallopeptidase family M24 IUD25_04235 PF00293 NUDIX domain IUD25_04240 PF00881 Nitroreductase family IUD25_04275 PF01063 Amino-transferase class IV IUD25_04280 PF02954 Bacterial regulatory protein, Fis family IUD25_04300 PF00535 Glycosyl transferase family 2 IUD25_04310 PF00925 GTP cyclohydrolase II IUD25_04315 PF00578 AhpC/TSA family IUD25_04325 PF00575 S1 RNA binding domain IUD25_04325 PF00773 RNB domain IUD25_04325 PF08461 Ribonuclease R winged-helix domain IUD25_04325 PF08206 Ribonuclease B OB domain IUD25_04325 PF17876 Cold shock domain IUD25_04330 PF00588 SpoU rRNA Methylase family IUD25_04330 PF08032 RNA 2'-O ribose methyltransferase substrate binding IUD25_04335 PF00132 Bacterial transferase hexapeptide (six repeats) IUD25_04340 PF01227 GTP cyclohydrolase I IUD25_04345 PF05662 Coiled stalk of trimeric autotransporter adhesin IUD25_04345 PF05658 Head domain of trimeric autotransporter adhesin IUD25_04345 PF03895 YadA-like membrane anchor domain IUD25_04350 PF03186 CobD/Cbib protein IUD25_04355 PF12805 FUSC-like inner membrane protein yccS IUD25_04360 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IUD25_04360 PF02843 Phosphoribosylglycinamide synthetase, C domain IUD25_04360 PF02844 Phosphoribosylglycinamide synthetase, N domain IUD25_04365 PF02142 MGS-like domain IUD25_04365 PF01808 AICARFT/IMPCHase bienzyme IUD25_04375 PF00588 SpoU rRNA Methylase family IUD25_04385 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUD25_04385 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUD25_04390 PF01555 DNA methylase IUD25_04390 PF18273 Type III R-M EcoP15I C-terminal domain IUD25_04400 PF00561 alpha/beta hydrolase fold IUD25_04405 PF03692 Putative zinc- or iron-chelating domain IUD25_04410 PF00795 Carbon-nitrogen hydrolase IUD25_04410 PF02540 NAD synthase IUD25_04415 PF02091 Glycyl-tRNA synthetase alpha subunit IUD25_04420 PF02092 Glycyl-tRNA synthetase beta subunit IUD25_04420 PF05746 DALR anticodon binding domain IUD25_04435 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IUD25_04435 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IUD25_04440 PF00072 Response regulator receiver domain IUD25_04445 PF01584 CheW-like domain IUD25_04450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUD25_04450 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IUD25_04455 PF02895 Signal transducing histidine kinase, homodimeric domain IUD25_04455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_04455 PF01627 Hpt domain IUD25_04455 PF00072 Response regulator receiver domain IUD25_04455 PF01584 CheW-like domain IUD25_04470 PF00156 Phosphoribosyl transferase domain IUD25_04485 PF08245 Mur ligase middle domain IUD25_04485 PF02875 Mur ligase family, glutamate ligase domain IUD25_04495 PF01432 Peptidase family M3 IUD25_04510 PF01625 Peptide methionine sulfoxide reductase IUD25_04515 PF00375 Sodium:dicarboxylate symporter family IUD25_04520 PF02780 Transketolase, C-terminal domain IUD25_04520 PF00456 Transketolase, thiamine diphosphate binding domain IUD25_04520 PF02779 Transketolase, pyrimidine binding domain IUD25_04525 PF02527 rRNA small subunit methyltransferase G IUD25_04530 PF01648 4'-phosphopantetheinyl transferase superfamily IUD25_04550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IUD25_04550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IUD25_04555 PF02910 Fumarate reductase flavoprotein C-term IUD25_04555 PF00890 FAD binding domain IUD25_04560 PF02445 Quinolinate synthetase A protein IUD25_04565 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUD25_04565 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUD25_04570 PF01371 Trp repressor protein IUD25_04595 PF02885 Glycosyl transferase family, helical bundle domain IUD25_04595 PF00117 Glutamine amidotransferase class-I IUD25_04595 PF00591 Glycosyl transferase family, a/b domain IUD25_04600 PF00425 chorismate binding enzyme IUD25_04600 PF04715 Anthranilate synthase component I, N terminal region IUD25_04605 PF04715 Anthranilate synthase component I, N terminal region IUD25_04605 PF00425 chorismate binding enzyme IUD25_04615 PF01026 TatD related DNase IUD25_04635 PF02881 SRP54-type protein, helical bundle domain IUD25_04635 PF00448 SRP54-type protein, GTPase domain IUD25_04640 PF00633 Helix-hairpin-helix motif IUD25_04640 PF14815 NUDIX domain IUD25_04640 PF00730 HhH-GPD superfamily base excision DNA repair protein IUD25_04695 PF04362 Bacterial Fe(2+) trafficking IUD25_04705 PF01709 Transcriptional regulator IUD25_04710 PF02075 Crossover junction endodeoxyribonuclease RuvC IUD25_04715 PF07499 RuvA, C-terminal domain IUD25_04715 PF01330 RuvA N terminal domain IUD25_04720 PF02705 K+ potassium transporter IUD25_04725 PF05496 Holliday junction DNA helicase RuvB P-loop domain IUD25_04725 PF05491 RuvB C-terminal winged helix domain IUD25_04725 PF17864 RuvB AAA lid domain IUD25_04730 PF03061 Thioesterase superfamily IUD25_04735 PF01618 MotA/TolQ/ExbB proton channel family IUD25_04740 PF02472 Biopolymer transport protein ExbD/TolR IUD25_04750 PF07676 WD40-like Beta Propeller Repeat IUD25_04750 PF04052 TolB amino-terminal domain IUD25_04755 PF00691 OmpA family IUD25_04765 PF04055 Radical SAM superfamily IUD25_04770 PF00300 Histidine phosphatase superfamily (branch 1) IUD25_04775 PF04493 Endonuclease V IUD25_04780 PF00854 POT family IUD25_04785 PF00255 Glutathione peroxidase IUD25_04790 PF00175 Oxidoreductase NAD-binding domain IUD25_04790 PF00970 Oxidoreductase FAD-binding domain IUD25_04795 PF13667 ThiC-associated domain IUD25_04795 PF01964 Radical SAM ThiC family IUD25_04800 PF10459 Peptidase S46 IUD25_04805 PF00300 Histidine phosphatase superfamily (branch 1) IUD25_04950 PF06508 Queuosine biosynthesis protein QueC IUD25_04955 PF02938 GAD domain IUD25_04955 PF00152 tRNA synthetases class II (D, K and N) IUD25_04955 PF01336 OB-fold nucleic acid binding domain IUD25_04960 PF05681 Fumarate hydratase (Fumerase) IUD25_04960 PF05683 Fumarase C-terminus IUD25_04980 PF03797 Autotransporter beta-domain IUD25_04980 PF00082 Subtilase family IUD25_04980 PF12951 Passenger-associated-transport-repeat IUD25_04985 PF01385 Probable transposase IUD25_04985 PF07282 Putative transposase DNA-binding domain IUD25_04985 PF12323 Helix-turn-helix domain IUD25_05035 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IUD25_05040 PF09386 Antitoxin ParD IUD25_05085 PF10876 Phage tail assemb.y chaperone protein, TAC IUD25_05140 PF04233 Phage Mu protein F like protein IUD25_05175 PF13018 Extended Signal Peptide of Type V secretion system IUD25_05175 PF04829 Pre-toxin domain with VENN motif IUD25_05175 PF05860 haemagglutination activity domain IUD25_05175 PF13332 Hemagglutinin repeat IUD25_05190 PF00589 Phage integrase family IUD25_05190 PF13356 Arm DNA-binding domain IUD25_05195 PF06381 Protein of unknown function (DUF1073) IUD25_05225 PF00959 Phage lysozyme IUD25_05260 PF10548 P22AR C-terminal domain IUD25_05260 PF02498 BRO family, N-terminal domain IUD25_05300 PF02661 Fic/DOC family IUD25_05300 PF17841 BID domain of Bartonella effector protein (Bep) IUD25_05305 PF18495 Antitoxin VbhA IUD25_05345 PF10065 Uncharacterized conserved protein (DUF2303) IUD25_05375 PF00436 Single-strand binding protein family IUD25_05385 PF00589 Phage integrase family IUD25_05385 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_05390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_05390 PF00512 His Kinase A (phospho-acceptor) domain IUD25_05390 PF00989 PAS fold IUD25_05395 PF02954 Bacterial regulatory protein, Fis family IUD25_05395 PF00072 Response regulator receiver domain IUD25_05395 PF00158 Sigma-54 interaction domain IUD25_05410 PF00909 Ammonium Transporter Family IUD25_05415 PF00543 Nitrogen regulatory protein P-II IUD25_05420 PF00120 Glutamine synthetase, catalytic domain IUD25_05420 PF03951 Glutamine synthetase, beta-Grasp domain IUD25_05425 PF02673 Bacitracin resistance protein BacA IUD25_05430 PF04264 YceI-like domain IUD25_05450 PF07055 Enoyl reductase FAD binding domain IUD25_05450 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUD25_05450 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUD25_05460 PF03109 ABC1 family IUD25_05470 PF00551 Formyl transferase IUD25_05475 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUD25_05475 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUD25_05485 PF03969 AFG1-like ATPase IUD25_05490 PF02566 OsmC-like protein IUD25_05495 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family IUD25_05500 PF03572 Peptidase family S41 IUD25_05500 PF17804 Tail specific protease N-terminal domain IUD25_05500 PF11818 C-terminal domain of tail specific protease (DUF3340) IUD25_05500 PF00595 PDZ domain IUD25_05505 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IUD25_05505 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IUD25_05510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUD25_05510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUD25_05510 PF00205 Thiamine pyrophosphate enzyme, central domain IUD25_05520 PF00291 Pyridoxal-phosphate dependent enzyme IUD25_05525 PF00682 HMGL-like IUD25_05525 PF08502 LeuA allosteric (dimerisation) domain IUD25_05530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUD25_05530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUD25_05535 PF01783 Ribosomal L32p protein family IUD25_05540 PF02620 Large ribosomal RNA subunit accumulation protein YceD IUD25_05550 PF07726 ATPase family associated with various cellular activities (AAA) IUD25_05550 PF17863 AAA lid domain IUD25_05560 PF11992 Domain of unknown function (DUF3488) IUD25_05560 PF13559 Domain of unknown function (DUF4129) IUD25_05560 PF01841 Transglutaminase-like superfamily IUD25_05570 PF01230 HIT domain IUD25_05575 PF13662 Toprim domain IUD25_05575 PF02132 RecR protein IUD25_05580 PF02575 YbaB/EbfC DNA-binding family IUD25_05585 PF12170 DNA polymerase III tau subunit V interacting with alpha IUD25_05585 PF12169 DNA polymerase III subunits gamma and tau domain III IUD25_05615 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IUD25_05615 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IUD25_05620 PF02556 Preprotein translocase subunit SecB IUD25_05625 PF00581 Rhodanese-like domain IUD25_05650 PF08279 HTH domain IUD25_05650 PF02237 Biotin protein ligase C terminal domain IUD25_05650 PF03099 Biotin/lipoate A/B protein ligase family IUD25_05655 PF03309 Type III pantothenate kinase IUD25_05685 PF00114 Pilin (bacterial filament) IUD25_05685 PF07963 Prokaryotic N-terminal methylation motif IUD25_05700 PF01168 Alanine racemase, N-terminal domain IUD25_05705 PF05190 MutS family domain IV IUD25_05705 PF01624 MutS domain I IUD25_05705 PF05188 MutS domain II IUD25_05705 PF05192 MutS domain III IUD25_05705 PF00488 MutS domain V IUD25_05710 PF00912 Transglycosylase IUD25_05715 PF01430 Hsp33 protein IUD25_05730 PF01042 Endoribonuclease L-PSP IUD25_05770 PF04984 Phage tail sheath protein subtilisin-like domain IUD25_05770 PF17482 Phage tail sheath C-terminal domain IUD25_05795 PF04221 RelB antitoxin IUD25_05800 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ IUD25_05870 PF00959 Phage lysozyme IUD25_05935 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT IUD25_06010 PF02498 BRO family, N-terminal domain IUD25_06010 PF10548 P22AR C-terminal domain IUD25_06045 PF00589 Phage integrase family IUD25_06045 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_06050 PF03706 Lysylphosphatidylglycerol synthase TM region IUD25_06050 PF09924 Uncharacterised conserved protein (DUF2156) IUD25_06060 PF00109 Beta-ketoacyl synthase, N-terminal domain IUD25_06060 PF02801 Beta-ketoacyl synthase, C-terminal domain IUD25_06070 PF00535 Glycosyl transferase family 2 IUD25_06085 PF00437 Type II/IV secretion system protein IUD25_06090 PF00437 Type II/IV secretion system protein IUD25_06105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IUD25_06105 PF03900 Porphobilinogen deaminase, C-terminal domain IUD25_06110 PF00072 Response regulator receiver domain IUD25_06110 PF04397 LytTr DNA-binding domain IUD25_06115 PF06580 Histidine kinase IUD25_06115 PF07694 5TMR of 5TMR-LYT IUD25_06120 PF02230 Phospholipase/Carboxylesterase IUD25_06125 PF13632 Glycosyl transferase family group 2 IUD25_06140 PF01209 ubiE/COQ5 methyltransferase family IUD25_06170 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IUD25_06180 PF00294 pfkB family carbohydrate kinase IUD25_06185 PF07690 Major Facilitator Superfamily IUD25_06195 PF04102 SlyX IUD25_06200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUD25_06200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUD25_06200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUD25_06205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUD25_06205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUD25_06210 PF00255 Glutathione peroxidase IUD25_06215 PF00005 ABC transporter IUD25_06245 PF05973 Phage derived protein Gp49-like (DUF891) IUD25_06250 PF01381 Helix-turn-helix IUD25_06300 PF10876 Phage tail assemb.y chaperone protein, TAC IUD25_06355 PF02899 Phage integrase, N-terminal SAM-like domain IUD25_06355 PF00589 Phage integrase family IUD25_06360 PF12848 ABC transporter IUD25_06360 PF00005 ABC transporter IUD25_06365 PF00593 TonB dependent receptor IUD25_06365 PF07715 TonB-dependent Receptor Plug Domain IUD25_06370 PF01323 DSBA-like thioredoxin domain IUD25_06375 PF07715 TonB-dependent Receptor Plug Domain IUD25_06375 PF00593 TonB dependent receptor IUD25_06380 PF00999 Sodium/hydrogen exchanger family IUD25_06380 PF02254 TrkA-N domain IUD25_06385 PF12849 PBP superfamily domain IUD25_06390 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_06395 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_06400 PF00005 ABC transporter IUD25_06405 PF01895 PhoU domain IUD25_06410 PF00929 Exonuclease IUD25_06415 PF00398 Ribosomal RNA adenine dimethylase IUD25_06420 PF04379 ApaG domain IUD25_06425 PF00149 Calcineurin-like phosphoesterase IUD25_06440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUD25_06460 PF00929 Exonuclease IUD25_06465 PF00075 RNase H IUD25_06475 PF00753 Metallo-beta-lactamase superfamily IUD25_06475 PF16123 Hydroxyacylglutathione hydrolase C-terminus IUD25_06495 PF17674 HHH domain IUD25_06495 PF00575 S1 RNA binding domain IUD25_06495 PF09371 Tex-like protein N-terminal domain IUD25_06495 PF16921 Tex protein YqgF-like domain IUD25_06510 PF00719 Inorganic pyrophosphatase IUD25_06515 PF00085 Thioredoxin IUD25_06525 PF13603 Leucyl-tRNA synthetase, Domain 2 IUD25_06525 PF08264 Anticodon-binding domain of tRNA IUD25_06525 PF00133 tRNA synthetases class I (I, L, M and V) IUD25_06540 PF01467 Cytidylyltransferase-like IUD25_06565 PF13406 Transglycosylase SLT domain IUD25_06570 PF05036 Sporulation related domain IUD25_06570 PF03330 Lytic transglycolase IUD25_06620 PF04829 Pre-toxin domain with VENN motif IUD25_06620 PF05860 haemagglutination activity domain IUD25_06620 PF13332 Hemagglutinin repeat IUD25_06680 PF09285 Elongation factor P, C-terminal IUD25_06680 PF01132 Elongation factor P (EF-P) OB domain IUD25_06680 PF08207 Elongation factor P (EF-P) KOW-like domain IUD25_06685 PF01565 FAD binding domain IUD25_06685 PF02913 FAD linked oxidases, C-terminal domain IUD25_06690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUD25_06690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUD25_06690 PF01842 ACT domain IUD25_06695 PF13520 Amino acid permease IUD25_06705 PF00596 Class II Aldolase and Adducin N-terminal domain IUD25_06710 PF03079 ARD/ARD' family IUD25_06720 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IUD25_06720 PF01502 Phosphoribosyl-AMP cyclohydrolase IUD25_06725 PF00977 Histidine biosynthesis protein IUD25_06730 PF00977 Histidine biosynthesis protein IUD25_06735 PF00117 Glutamine amidotransferase class-I IUD25_06740 PF00475 Imidazoleglycerol-phosphate dehydratase IUD25_06745 PF00155 Aminotransferase class I and II IUD25_06750 PF00815 Histidinol dehydrogenase IUD25_06755 PF08029 HisG, C-terminal domain IUD25_06755 PF01634 ATP phosphoribosyltransferase IUD25_06770 PF03129 Anticodon binding domain IUD25_06770 PF13393 Histidyl-tRNA synthetase IUD25_06775 PF14821 Threonine synthase N terminus IUD25_06775 PF00291 Pyridoxal-phosphate dependent enzyme IUD25_06780 PF00288 GHMP kinases N terminal domain IUD25_06780 PF08544 GHMP kinases C terminal IUD25_06785 PF00696 Amino acid kinase family IUD25_06785 PF01842 ACT domain IUD25_06785 PF03447 Homoserine dehydrogenase, NAD binding domain IUD25_06785 PF00742 Homoserine dehydrogenase IUD25_06785 PF13840 ACT domain IUD25_06790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUD25_06790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUD25_06795 PF03652 Holliday junction resolvase IUD25_06800 PF02622 Uncharacterized ACR, COG1678 IUD25_06805 PF07943 Penicillin-binding protein 5, C-terminal domain IUD25_06805 PF00768 D-alanyl-D-alanine carboxypeptidase IUD25_06815 PF00141 Peroxidase IUD25_06825 PF00226 DnaJ domain IUD25_06825 PF01556 DnaJ C terminal domain IUD25_06835 PF00905 Penicillin binding protein transpeptidase domain IUD25_06835 PF00912 Transglycosylase IUD25_06835 PF06832 Penicillin-Binding Protein C-terminus Family IUD25_06845 PF00593 TonB dependent receptor IUD25_06845 PF07715 TonB-dependent Receptor Plug Domain IUD25_06850 PF04542 Sigma-70 region 2 IUD25_06850 PF08281 Sigma-70, region 4 IUD25_06860 PF13180 PDZ domain IUD25_06865 PF00679 Elongation factor G C-terminus IUD25_06865 PF00009 Elongation factor Tu GTP binding domain IUD25_06865 PF06421 GTP-binding protein LepA C-terminus IUD25_06865 PF03144 Elongation factor Tu domain 2 IUD25_06870 PF10502 Signal peptidase, peptidase S26 IUD25_06880 PF00035 Double-stranded RNA binding motif IUD25_06880 PF14622 Ribonuclease-III-like IUD25_06885 PF01926 50S ribosome-binding GTPase IUD25_06885 PF07650 KH domain IUD25_06890 PF02565 Recombination protein O C terminal IUD25_06890 PF11967 Recombination protein O N terminal IUD25_06895 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IUD25_06895 PF02780 Transketolase, C-terminal domain IUD25_06895 PF02779 Transketolase, pyrimidine binding domain IUD25_06900 PF00474 Sodium:solute symporter family IUD25_06910 PF16177 Acetyl-coenzyme A synthetase N-terminus IUD25_06910 PF00501 AMP-binding enzyme IUD25_06910 PF13193 AMP-binding enzyme C-terminal domain IUD25_06915 PF02659 Putative manganese efflux pump IUD25_06925 PF13360 PQQ-like domain IUD25_06930 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region IUD25_06930 PF07676 WD40-like Beta Propeller Repeat IUD25_06930 PF00326 Prolyl oligopeptidase family IUD25_06935 PF03169 OPT oligopeptide transporter protein IUD25_06945 PF01266 FAD dependent oxidoreductase IUD25_06945 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IUD25_06950 PF00230 Major intrinsic protein IUD25_06955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUD25_06955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUD25_06965 PF01263 Aldose 1-epimerase IUD25_06970 PF01717 Cobalamin-independent synthase, Catalytic domain IUD25_06970 PF08267 Cobalamin-independent synthase, N-terminal domain IUD25_06975 PF02677 Epoxyqueuosine reductase QueH IUD25_06980 PF00857 Isochorismatase family IUD25_06985 PF00501 AMP-binding enzyme IUD25_06995 PF00535 Glycosyl transferase family 2 IUD25_07000 PF01370 NAD dependent epimerase/dehydratase family IUD25_07005 PF17762 HTH domain found in ParB protein IUD25_07005 PF02195 ParB-like nuclease domain IUD25_07010 PF13614 AAA domain IUD25_07020 PF02403 Seryl-tRNA synthetase N-terminal domain IUD25_07020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUD25_07025 PF03544 Gram-negative bacterial TonB protein C-terminal IUD25_07055 PF01555 DNA methylase IUD25_07065 PF08459 UvrC Helix-hairpin-helix N-terminal IUD25_07065 PF02151 UvrB/uvrC motif IUD25_07065 PF01541 GIY-YIG catalytic domain IUD25_07070 PF01066 CDP-alcohol phosphatidyltransferase IUD25_07090 PF00490 Delta-aminolevulinic acid dehydratase IUD25_07095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUD25_07110 PF00202 Aminotransferase class-III IUD25_07115 PF10609 NUBPL iron-transfer P-loop NTPase IUD25_07120 PF02348 Cytidylyltransferase IUD25_07125 PF01451 Low molecular weight phosphotyrosine protein phosphatase IUD25_07130 PF01555 DNA methylase IUD25_07215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUD25_07220 PF01842 ACT domain IUD25_07220 PF01817 Chorismate mutase type II IUD25_07220 PF00800 Prephenate dehydratase IUD25_07225 PF00266 Aminotransferase class-V IUD25_07235 PF12679 ABC-2 family transporter protein IUD25_07240 PF00005 ABC transporter IUD25_07250 PF00186 Dihydrofolate reductase IUD25_07255 PF00303 Thymidylate synthase IUD25_07260 PF01790 Prolipoprotein diacylglyceryl transferase IUD25_07265 PF01219 Prokaryotic diacylglycerol kinase IUD25_07270 PF00486 Transcriptional regulatory protein, C terminal IUD25_07270 PF00072 Response regulator receiver domain IUD25_07275 PF01817 Chorismate mutase type II IUD25_07275 PF02153 Prephenate dehydrogenase IUD25_07280 PF00684 DnaJ central domain IUD25_07280 PF01556 DnaJ C terminal domain IUD25_07280 PF00226 DnaJ domain IUD25_07285 PF00012 Hsp70 protein IUD25_07290 PF01025 GrpE IUD25_07295 PF01628 HrcA protein C terminal domain IUD25_07295 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding IUD25_07300 PF02463 RecF/RecN/SMC N terminal domain IUD25_07300 PF13476 AAA domain IUD25_07305 PF01475 Ferric uptake regulator family IUD25_07310 PF04355 SmpA / OmlA family IUD25_07315 PF03658 RnfH family Ubiquitin IUD25_07325 PF01668 SmpB protein IUD25_07335 PF00313 'Cold-shock' DNA-binding domain IUD25_07340 PF01048 Phosphorylase superfamily IUD25_07345 PF00156 Phosphoribosyl transferase domain IUD25_07350 PF00933 Glycosyl hydrolase family 3 N terminal domain IUD25_07355 PF01928 CYTH domain IUD25_07360 PF05958 tRNA (Uracil-5-)-methyltransferase IUD25_07365 PF00072 Response regulator receiver domain IUD25_07365 PF00486 Transcriptional regulatory protein, C terminal IUD25_07370 PF03808 Glycosyl transferase WecB/TagA/CpsF family IUD25_07380 PF14667 Polysaccharide biosynthesis C-terminal domain IUD25_07385 PF13439 Glycosyltransferase Family 4 IUD25_07385 PF00534 Glycosyl transferases group 1 IUD25_07400 PF02397 Bacterial sugar transferase IUD25_07415 PF00180 Isocitrate/isopropylmalate dehydrogenase IUD25_07420 PF00694 Aconitase C-terminal domain IUD25_07425 PF00330 Aconitase family (aconitate hydratase) IUD25_07445 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IUD25_07445 PF14489 QueF-like protein IUD25_07450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUD25_07455 PF00873 AcrB/AcrD/AcrF family IUD25_07460 PF00873 AcrB/AcrD/AcrF family IUD25_07470 PF08240 Alcohol dehydrogenase GroES-like domain IUD25_07470 PF00107 Zinc-binding dehydrogenase IUD25_07490 PF00462 Glutaredoxin IUD25_07495 PF01522 Polysaccharide deacetylase IUD25_07500 PF00155 Aminotransferase class I and II IUD25_07505 PF00005 ABC transporter IUD25_07505 PF00664 ABC transporter transmembrane region IUD25_07505 PF03412 Peptidase C39 family IUD25_07570 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IUD25_07570 PF06594 Haemolysin-type calcium binding protein related domain IUD25_07580 PF13091 PLD-like domain IUD25_07580 PF13087 AAA domain IUD25_07615 PF02401 LytB protein IUD25_07620 PF01252 Signal peptidase (SPase) II IUD25_07625 PF00133 tRNA synthetases class I (I, L, M and V) IUD25_07625 PF06827 Zinc finger found in FPG and IleRS IUD25_07625 PF08264 Anticodon-binding domain of tRNA IUD25_07630 PF01687 Riboflavin kinase IUD25_07630 PF06574 FAD synthetase IUD25_07635 PF03023 Lipid II flippase MurJ IUD25_07640 PF01649 Ribosomal protein S20 IUD25_07645 PF01926 50S ribosome-binding GTPase IUD25_07645 PF01018 GTP1/OBG IUD25_07650 PF01016 Ribosomal L27 protein IUD25_07655 PF00829 Ribosomal prokaryotic L21 protein IUD25_07660 PF00005 ABC transporter IUD25_07660 PF17755 UvrA DNA-binding domain IUD25_07660 PF17760 UvrA interaction domain IUD25_07675 PF00958 GMP synthase C terminal domain IUD25_07675 PF00117 Glutamine amidotransferase class-I IUD25_07675 PF02540 NAD synthase IUD25_07680 PF00478 IMP dehydrogenase / GMP reductase domain IUD25_07680 PF00571 CBS domain IUD25_07685 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IUD25_07685 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IUD25_07690 PF00483 Nucleotidyl transferase IUD25_07695 PF02719 Polysaccharide biosynthesis protein IUD25_07700 PF00953 Glycosyl transferase family 4 IUD25_07705 PF18073 Rubredoxin metal binding domain IUD25_07715 PF00216 Bacterial DNA-binding protein IUD25_07720 PF00575 S1 RNA binding domain IUD25_07725 PF02224 Cytidylate kinase IUD25_07730 PF00444 Ribosomal protein L36 IUD25_07740 PF04371 Porphyromonas-type peptidyl-arginine deiminase IUD25_07745 PF00795 Carbon-nitrogen hydrolase IUD25_07760 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_07765 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_07790 PF02616 Segregation and condensation protein ScpA IUD25_07795 PF04079 Segregation and condensation complex subunit ScpB IUD25_07800 PF01479 S4 domain IUD25_07800 PF00849 RNA pseudouridylate synthase IUD25_07810 PF00795 Carbon-nitrogen hydrolase IUD25_07815 PF00155 Aminotransferase class I and II IUD25_07820 PF00005 ABC transporter IUD25_07825 PF03379 CcmB protein IUD25_07830 PF01578 Cytochrome C assembly protein IUD25_07840 PF03100 CcmE IUD25_07845 PF01578 Cytochrome C assembly protein IUD25_07845 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUD25_07850 PF08534 Redoxin IUD25_07855 PF03918 Cytochrome C biogenesis protein IUD25_07870 PF00561 alpha/beta hydrolase fold IUD25_07875 PF00295 Glycosyl hydrolases family 28 IUD25_07890 PF13419 Haloacid dehalogenase-like hydrolase IUD25_07900 PF01979 Amidohydrolase family IUD25_07905 PF01132 Elongation factor P (EF-P) OB domain IUD25_07905 PF08207 Elongation factor P (EF-P) KOW-like domain IUD25_07905 PF09285 Elongation factor P, C-terminal IUD25_07910 PF04055 Radical SAM superfamily IUD25_07915 PF00588 SpoU rRNA Methylase family IUD25_07920 PF00459 Inositol monophosphatase family IUD25_07940 PF09115 DNA polymerase III, delta subunit, C terminal IUD25_07945 PF02618 YceG-like family IUD25_07950 PF04715 Anthranilate synthase component I, N terminal region IUD25_07950 PF00425 chorismate binding enzyme IUD25_07955 PF00109 Beta-ketoacyl synthase, N-terminal domain IUD25_07955 PF02801 Beta-ketoacyl synthase, C-terminal domain IUD25_07960 PF00550 Phosphopantetheine attachment site IUD25_07970 PF00698 Acyl transferase domain IUD25_07975 PF00456 Transketolase, thiamine diphosphate binding domain IUD25_07975 PF17831 Pyruvate dehydrogenase E1 component middle domain IUD25_07980 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IUD25_07980 PF06594 Haemolysin-type calcium binding protein related domain IUD25_08010 PF00348 Polyprenyl synthetase IUD25_08015 PF02609 Exonuclease VII small subunit IUD25_08020 PF01171 PP-loop family IUD25_08020 PF09179 TilS substrate binding domain IUD25_08020 PF11734 TilS substrate C-terminal domain IUD25_08025 PF00245 Alkaline phosphatase IUD25_08030 PF00375 Sodium:dicarboxylate symporter family IUD25_08040 PF00877 NlpC/P60 family IUD25_08045 PF00877 NlpC/P60 family IUD25_08050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUD25_08055 PF04235 Protein of unknown function (DUF418) IUD25_08070 PF10576 Iron-sulfur binding domain of endonuclease III IUD25_08070 PF00633 Helix-hairpin-helix motif IUD25_08070 PF00730 HhH-GPD superfamily base excision DNA repair protein IUD25_08080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUD25_08080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUD25_08115 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUD25_08115 PF01488 Shikimate / quinate 5-dehydrogenase IUD25_08115 PF08501 Shikimate dehydrogenase substrate binding domain IUD25_08125 PF02581 Thiamine monophosphate synthase IUD25_08125 PF08543 Phosphomethylpyrimidine kinase IUD25_08130 PF11412 Disulphide bond corrector protein DsbC IUD25_08130 PF02683 Cytochrome C biogenesis protein transmembrane region IUD25_08135 PF03091 CutA1 divalent ion tolerance protein IUD25_08140 PF00166 Chaperonin 10 Kd subunit IUD25_08145 PF00118 TCP-1/cpn60 chaperonin family IUD25_08170 PF01370 NAD dependent epimerase/dehydratase family IUD25_08175 PF01370 NAD dependent epimerase/dehydratase family IUD25_08180 PF16363 GDP-mannose 4,6 dehydratase IUD25_08195 PF00291 Pyridoxal-phosphate dependent enzyme IUD25_08215 PF07715 TonB-dependent Receptor Plug Domain IUD25_08215 PF00593 TonB dependent receptor IUD25_08220 PF18331 PKHD-type hydroxylase C-terminal domain IUD25_08220 PF13640 2OG-Fe(II) oxygenase superfamily IUD25_08240 PF02424 ApbE family IUD25_08250 PF01636 Phosphotransferase enzyme family IUD25_08255 PF00483 Nucleotidyl transferase IUD25_08260 PF00308 Bacterial dnaA protein IUD25_08265 PF01594 AI-2E family transporter IUD25_08275 PF00586 AIR synthase related protein, N-terminal domain IUD25_08275 PF02769 AIR synthase related protein, C-terminal domain IUD25_08280 PF00551 Formyl transferase IUD25_08295 PF02223 Thymidylate kinase IUD25_08305 PF05649 Peptidase family M13 IUD25_08305 PF01431 Peptidase family M13 IUD25_08315 PF07977 FabA-like domain IUD25_08320 PF01171 PP-loop family IUD25_08325 PF04381 Putative exonuclease, RdgC IUD25_08335 PF00762 Ferrochelatase IUD25_08345 PF02416 mttA/Hcf106 family IUD25_08350 PF02416 mttA/Hcf106 family IUD25_08355 PF00902 Sec-independent protein translocase protein (TatC) IUD25_08365 PF00117 Glutamine amidotransferase class-I IUD25_08365 PF00958 GMP synthase C terminal domain IUD25_08375 PF00127 Copper binding proteins, plastocyanin/azurin family IUD25_08380 PF03193 RsgA GTPase IUD25_08385 PF02021 Uncharacterised protein family UPF0102 IUD25_08390 PF04348 LppC putative lipoprotein IUD25_08395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUD25_08400 PF00593 TonB dependent receptor IUD25_08400 PF07715 TonB-dependent Receptor Plug Domain IUD25_08405 PF09334 tRNA synthetases class I (M) IUD25_08405 PF01588 Putative tRNA binding domain IUD25_08415 PF04060 Putative Fe-S cluster IUD25_08470 PF01807 CHC2 zinc finger IUD25_08470 PF08275 DNA primase catalytic core, N-terminal domain IUD25_08490 PF00436 Single-strand binding protein family IUD25_08535 PF07963 Prokaryotic N-terminal methylation motif IUD25_08535 PF00114 Pilin (bacterial filament) IUD25_08540 PF05567 Neisseria PilC beta-propeller domain IUD25_08560 PF14245 Type IV pilin PilA IUD25_08560 PF07963 Prokaryotic N-terminal methylation motif IUD25_08565 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IUD25_08565 PF03641 Possible lysine decarboxylase IUD25_08565 PF11892 Domain of unknown function (DUF3412) IUD25_08570 PF12792 CSS motif domain associated with EAL IUD25_08570 PF00563 EAL domain IUD25_08575 PF00899 ThiF family IUD25_08580 PF01926 50S ribosome-binding GTPase IUD25_08580 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IUD25_08585 PF01011 PQQ enzyme repeat IUD25_08585 PF13360 PQQ-like domain IUD25_08605 PF04055 Radical SAM superfamily IUD25_08610 PF00334 Nucleoside diphosphate kinase IUD25_08615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUD25_08615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUD25_08620 PF00709 Adenylosuccinate synthetase IUD25_08630 PF01145 SPFH domain / Band 7 family IUD25_08635 PF12221 Bacterial membrane protein N terminal IUD25_08635 PF01145 SPFH domain / Band 7 family IUD25_08640 PF00107 Zinc-binding dehydrogenase IUD25_08640 PF08240 Alcohol dehydrogenase GroES-like domain IUD25_08645 PF00072 Response regulator receiver domain IUD25_08660 PF03129 Anticodon binding domain IUD25_08660 PF04073 Aminoacyl-tRNA editing domain IUD25_08660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUD25_08670 PF01066 CDP-alcohol phosphatidyltransferase IUD25_08685 PF00933 Glycosyl hydrolase family 3 N terminal domain IUD25_08685 PF01915 Glycosyl hydrolase family 3 C-terminal domain IUD25_08685 PF14310 Fibronectin type III-like domain IUD25_08690 PF00924 Mechanosensitive ion channel IUD25_08695 PF02152 Dihydroneopterin aldolase IUD25_08700 PF00814 Glycoprotease family IUD25_08705 PF01165 Ribosomal protein S21 IUD25_08710 PF09424 Yqey-like protein IUD25_08715 PF03631 Virulence factor BrkB IUD25_08720 PF01807 CHC2 zinc finger IUD25_08720 PF08275 DNA primase catalytic core, N-terminal domain IUD25_08720 PF08278 DNA primase DnaG DnaB-binding IUD25_08720 PF10410 DnaB-helicase binding domain of primase IUD25_08735 PF01555 DNA methylase IUD25_08745 PF00579 tRNA synthetases class I (W and Y) IUD25_08750 PF13538 UvrD-like helicase C-terminal domain IUD25_08760 PF13361 UvrD-like helicase C-terminal domain IUD25_08760 PF00580 UvrD/REP helicase N-terminal domain IUD25_08760 PF12705 PD-(D/E)XK nuclease superfamily IUD25_08765 PF17946 RecC C-terminal domain IUD25_08770 PF00005 ABC transporter IUD25_08775 PF02405 Permease MlaE IUD25_08785 PF05494 MlaC protein IUD25_08795 PF04333 MlaA lipoprotein IUD25_08800 PF02646 RmuC family IUD25_08805 PF00005 ABC transporter IUD25_08815 PF13520 Amino acid permease IUD25_08820 PF10672 S-adenosylmethionine-dependent methyltransferase IUD25_08820 PF17785 PUA-like domain IUD25_08825 PF03741 Integral membrane protein TerC family IUD25_08830 PF01521 Iron-sulphur cluster biosynthesis IUD25_08845 PF00072 Response regulator receiver domain IUD25_08845 PF00486 Transcriptional regulatory protein, C terminal IUD25_08855 PF00210 Ferritin-like domain IUD25_08865 PF00293 NUDIX domain IUD25_08880 PF02773 S-adenosylmethionine synthetase, C-terminal domain IUD25_08880 PF02772 S-adenosylmethionine synthetase, central domain IUD25_08880 PF00438 S-adenosylmethionine synthetase, N-terminal domain IUD25_08885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_08890 PF00072 Response regulator receiver domain IUD25_08890 PF00486 Transcriptional regulatory protein, C terminal IUD25_08900 PF01207 Dihydrouridine synthase (Dus) IUD25_08910 PF00593 TonB dependent receptor IUD25_08910 PF07715 TonB-dependent Receptor Plug Domain IUD25_08925 PF17871 AAA lid domain IUD25_08925 PF07724 AAA domain (Cdc48 subfamily) IUD25_08925 PF00004 ATPase family associated with various cellular activities (AAA) IUD25_08925 PF02861 Clp amino terminal domain, pathogenicity island component IUD25_08925 PF10431 C-terminal, D2-small domain, of ClpB protein IUD25_08930 PF00301 Rubredoxin IUD25_08935 PF02581 Thiamine monophosphate synthase IUD25_08940 PF00067 Cytochrome P450 IUD25_08945 PF00884 Sulfatase IUD25_08945 PF08019 Phosphoethanolamine transferase EptA/EptB IUD25_08955 PF07660 Secretin and TonB N terminus short domain IUD25_08955 PF03958 Bacterial type II/III secretion system short domain IUD25_08955 PF00263 Bacterial type II and III secretion system protein IUD25_08955 PF11741 AMIN domain IUD25_08960 PF04351 Pilus assembly protein, PilP IUD25_08965 PF04350 Pilus assembly protein, PilO IUD25_08970 PF05137 Fimbrial assembly protein (PilN) IUD25_08975 PF11104 Type IV pilus assembly protein PilM; IUD25_08980 PF00905 Penicillin binding protein transpeptidase domain IUD25_08980 PF00912 Transglycosylase IUD25_08980 PF17092 Penicillin-binding protein OB-like domain IUD25_08985 PF00248 Aldo/keto reductase family IUD25_08990 PF00294 pfkB family carbohydrate kinase IUD25_08995 PF00691 OmpA family IUD25_08995 PF05736 OprF membrane domain IUD25_09000 PF00772 DnaB-like helicase N terminal domain IUD25_09000 PF03796 DnaB-like helicase C terminal domain IUD25_09020 PF00067 Cytochrome P450 IUD25_09030 PF17191 RecG wedge domain IUD25_09030 PF00271 Helicase conserved C-terminal domain IUD25_09030 PF00270 DEAD/DEAH box helicase IUD25_09035 PF01042 Endoribonuclease L-PSP IUD25_09040 PF02824 TGS domain IUD25_09040 PF13291 ACT domain IUD25_09040 PF04607 Region found in RelA / SpoT proteins IUD25_09045 PF01565 FAD binding domain IUD25_09045 PF02913 FAD linked oxidases, C-terminal domain IUD25_09050 PF00691 OmpA family IUD25_09050 PF05736 OprF membrane domain IUD25_09055 PF02600 Disulfide bond formation protein DsbB IUD25_09060 PF00593 TonB dependent receptor IUD25_09060 PF07715 TonB-dependent Receptor Plug Domain IUD25_09065 PF02590 Predicted SPOUT methyltransferase IUD25_09160 PF02498 BRO family, N-terminal domain IUD25_09160 PF10548 P22AR C-terminal domain IUD25_09205 PF00271 Helicase conserved C-terminal domain IUD25_09205 PF04851 Type III restriction enzyme, res subunit IUD25_09205 PF02151 UvrB/uvrC motif IUD25_09205 PF12344 Ultra-violet resistance protein B IUD25_09205 PF17757 UvrB interaction domain IUD25_09220 PF00701 Dihydrodipicolinate synthetase family IUD25_09230 PF00578 AhpC/TSA family IUD25_09250 PF02769 AIR synthase related protein, C-terminal domain IUD25_09250 PF00586 AIR synthase related protein, N-terminal domain IUD25_09255 PF01029 NusB family IUD25_09260 PF00885 6,7-dimethyl-8-ribityllumazine synthase IUD25_09265 PF00925 GTP cyclohydrolase II IUD25_09265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUD25_09270 PF00677 Lumazine binding domain IUD25_09275 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUD25_09275 PF01872 RibD C-terminal domain IUD25_09280 PF03477 ATP cone domain IUD25_09290 PF00464 Serine hydroxymethyltransferase IUD25_09295 PF00005 ABC transporter IUD25_09295 PF12848 ABC transporter IUD25_09300 PF06039 Malate:quinone oxidoreductase (Mqo) IUD25_09305 PF04134 Protein of unknown function, DUF393 IUD25_09315 PF02578 Multi-copper polyphenol oxidoreductase laccase IUD25_09320 PF01479 S4 domain IUD25_09320 PF00849 RNA pseudouridylate synthase IUD25_09325 PF13525 Outer membrane lipoprotein IUD25_09340 PF04023 FeoA domain IUD25_09340 PF07664 Ferrous iron transport protein B C terminus IUD25_09340 PF17910 FeoB cytosolic helical domain IUD25_09340 PF02421 Ferrous iron transport protein B IUD25_09340 PF07670 Nucleoside recognition IUD25_09350 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IUD25_09355 PF01189 16S rRNA methyltransferase RsmB/F IUD25_09355 PF01029 NusB family IUD25_09360 PF02911 Formyl transferase, C-terminal domain IUD25_09360 PF00551 Formyl transferase IUD25_09365 PF01327 Polypeptide deformylase IUD25_09375 PF02481 DNA recombination-mediator protein A IUD25_09375 PF17782 DprA winged helix domain IUD25_09380 PF04361 Protein of unknown function (DUF494) IUD25_09385 PF01751 Toprim domain IUD25_09385 PF01131 DNA topoisomerase IUD25_09385 PF13368 Topoisomerase C-terminal repeat IUD25_09390 PF01300 Telomere recombination IUD25_09420 PF04386 Stringent starvation protein B IUD25_09425 PF02798 Glutathione S-transferase, N-terminal domain IUD25_09425 PF00043 Glutathione S-transferase, C-terminal domain IUD25_09430 PF02167 Cytochrome C1 family IUD25_09435 PF00033 Cytochrome b/b6/petB IUD25_09435 PF00032 Cytochrome b(C-terminal)/b6/petD IUD25_09440 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IUD25_09440 PF00355 Rieske [2Fe-2S] domain IUD25_09445 PF01464 Transglycosylase SLT domain IUD25_09450 PF00919 Uncharacterized protein family UPF0004 IUD25_09450 PF01938 TRAM domain IUD25_09450 PF04055 Radical SAM superfamily IUD25_09455 PF02562 PhoH-like protein IUD25_09460 PF02130 Uncharacterized protein family UPF0054 IUD25_09470 PF03471 Transporter associated domain IUD25_09470 PF00571 CBS domain IUD25_09480 PF01544 CorA-like Mg2+ transporter protein IUD25_09540 PF00905 Penicillin binding protein transpeptidase domain IUD25_09540 PF14814 Bifunctional transglycosylase second domain IUD25_09540 PF00912 Transglycosylase IUD25_09550 PF04851 Type III restriction enzyme, res subunit IUD25_09550 PF13307 Helicase C-terminal domain IUD25_09565 PF00484 Carbonic anhydrase IUD25_09575 PF01522 Polysaccharide deacetylase IUD25_09585 PF09383 NIL domain IUD25_09585 PF00005 ABC transporter IUD25_09590 PF00528 Binding-protein-dependent transport system inner membrane component IUD25_09595 PF03180 NLPA lipoprotein IUD25_09610 PF00364 Biotin-requiring enzyme IUD25_09610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUD25_09610 PF02817 e3 binding domain IUD25_09615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUD25_09615 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUD25_09625 PF01545 Cation efflux family IUD25_09630 PF01053 Cys/Met metabolism PLP-dependent enzyme IUD25_09635 PF00561 alpha/beta hydrolase fold IUD25_09640 PF01551 Peptidase family M23 IUD25_09650 PF01975 Survival protein SurE IUD25_09660 PF09335 SNARE associated Golgi protein IUD25_09665 PF01551 Peptidase family M23 IUD25_09665 PF01476 LysM domain IUD25_09675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_09675 PF16736 Single Cache-like IUD25_09675 PF00989 PAS fold IUD25_09675 PF00512 His Kinase A (phospho-acceptor) domain IUD25_09680 PF00842 Alanine racemase, C-terminal domain IUD25_09680 PF01168 Alanine racemase, N-terminal domain IUD25_09685 PF01266 FAD dependent oxidoreductase IUD25_09690 PF01641 SelR domain IUD25_09695 PF01476 LysM domain IUD25_09695 PF00704 Glycosyl hydrolases family 18 IUD25_09700 PF07691 PA14 domain IUD25_09700 PF00728 Glycosyl hydrolase family 20, catalytic domain IUD25_09700 PF02838 Glycosyl hydrolase family 20, domain 2 IUD25_09710 PF00933 Glycosyl hydrolase family 3 N terminal domain IUD25_09710 PF14310 Fibronectin type III-like domain IUD25_09710 PF01915 Glycosyl hydrolase family 3 C-terminal domain IUD25_09710 PF07691 PA14 domain IUD25_09725 PF17678 Glycosyl hydrolase family 92 N-terminal domain IUD25_09725 PF07971 Glycosyl hydrolase family 92 IUD25_09730 PF01301 Glycosyl hydrolases family 35 IUD25_09735 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUD25_09740 PF09312 SurA N-terminal domain IUD25_09740 PF00639 PPIC-type PPIASE domain IUD25_09745 PF03968 OstA-like protein IUD25_09745 PF04453 LPS transport system D IUD25_09750 PF01494 FAD binding domain IUD25_09755 PF01494 FAD binding domain IUD25_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUD25_09765 PF03466 LysR substrate binding domain IUD25_09770 PF14824 Sirohaem biosynthesis protein central IUD25_09770 PF10414 Sirohaem synthase dimerisation region IUD25_09770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUD25_09775 PF00291 Pyridoxal-phosphate dependent enzyme IUD25_09795 PF00274 Fructose-bisphosphate aldolase class-I IUD25_09800 PF00224 Pyruvate kinase, barrel domain IUD25_09800 PF02887 Pyruvate kinase, alpha/beta domain IUD25_09805 PF00162 Phosphoglycerate kinase IUD25_09815 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUD25_09820 PF01475 Ferric uptake regulator family IUD25_09830 PF00553 Cellulose binding domain IUD25_09830 PF00150 Cellulase (glycosyl hydrolase family 5) IUD25_09855 PF03330 Lytic transglycolase IUD25_09860 PF01043 SecA preprotein cross-linking domain IUD25_09860 PF02810 SEC-C motif IUD25_09860 PF07516 SecA Wing and Scaffold domain IUD25_09860 PF07517 SecA DEAD-like domain IUD25_09865 PF01551 Peptidase family M23 IUD25_09865 PF01476 LysM domain IUD25_09865 PF08525 Opacity-associated protein A N-terminal motif IUD25_09875 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IUD25_09880 PF12327 FtsZ family, C-terminal domain IUD25_09880 PF00091 Tubulin/FtsZ family, GTPase domain IUD25_09885 PF02491 SHS2 domain inserted in FTSA IUD25_09890 PF03799 Cell division protein FtsQ IUD25_09890 PF08478 POTRA domain, FtsQ-type IUD25_09895 PF07478 D-ala D-ala ligase C-terminus IUD25_09895 PF01820 D-ala D-ala ligase N-terminus IUD25_09900 PF08245 Mur ligase middle domain IUD25_09900 PF02875 Mur ligase family, glutamate ligase domain IUD25_09900 PF01225 Mur ligase family, catalytic domain IUD25_09905 PF03033 Glycosyltransferase family 28 N-terminal domain IUD25_09905 PF04101 Glycosyltransferase family 28 C-terminal domain IUD25_09910 PF01098 Cell cycle protein IUD25_09915 PF00953 Glycosyl transferase family 4 IUD25_09920 PF01225 Mur ligase family, catalytic domain IUD25_09920 PF02875 Mur ligase family, glutamate ligase domain IUD25_09920 PF08245 Mur ligase middle domain IUD25_09925 PF02875 Mur ligase family, glutamate ligase domain IUD25_09925 PF01225 Mur ligase family, catalytic domain IUD25_09925 PF08245 Mur ligase middle domain IUD25_09930 PF00905 Penicillin binding protein transpeptidase domain IUD25_09930 PF03717 Penicillin-binding Protein dimerisation domain IUD25_09935 PF04999 Cell division protein FtsL IUD25_09940 PF01795 MraW methylase family IUD25_09945 PF02381 MraZ protein, putative antitoxin-like IUD25_09950 PF02080 TrkA-C domain IUD25_09950 PF03600 Citrate transporter IUD25_09955 PF02390 Putative methyltransferase IUD25_09960 PF05690 Thiazole biosynthesis protein ThiG IUD25_09965 PF05690 Thiazole biosynthesis protein ThiG IUD25_09965 PF02597 ThiS family IUD25_10005 PF07977 FabA-like domain IUD25_10025 PF00753 Metallo-beta-lactamase superfamily IUD25_10025 PF04273 Putative phosphatase (DUF442) IUD25_10035 PF04143 Sulphur transport IUD25_10045 PF01925 Sulfite exporter TauE/SafE IUD25_10050 PF00692 dUTPase IUD25_10060 PF08676 MutL C terminal dimerisation domain IUD25_10060 PF01119 DNA mismatch repair protein, C-terminal domain IUD25_10065 PF11741 AMIN domain IUD25_10065 PF01520 N-acetylmuramoyl-L-alanine amidase IUD25_10070 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IUD25_10075 PF03853 YjeF-related protein N-terminus IUD25_10075 PF01256 Carbohydrate kinase IUD25_10080 PF02601 Exonuclease VII, large subunit IUD25_10080 PF13742 OB-fold nucleic acid binding domain IUD25_10095 PF00570 HRDC domain IUD25_10095 PF01612 3'-5' exonuclease IUD25_10105 PF18125 RlmM ferredoxin-like domain IUD25_10105 PF01728 FtsJ-like methyltransferase IUD25_10125 PF00216 Bacterial DNA-binding protein IUD25_10130 PF03147 Ferredoxin-fold anticodon binding domain IUD25_10130 PF01588 Putative tRNA binding domain IUD25_10130 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IUD25_10130 PF03483 B3/4 domain IUD25_10130 PF03484 tRNA synthetase B5 domain IUD25_10135 PF01409 tRNA synthetases class II core domain (F) IUD25_10135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IUD25_10140 PF00453 Ribosomal protein L20 IUD25_10145 PF01632 Ribosomal protein L35 IUD25_10150 PF00707 Translation initiation factor IF-3, C-terminal domain IUD25_10150 PF05198 Translation initiation factor IF-3, N-terminal domain IUD25_10155 PF03129 Anticodon binding domain IUD25_10155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUD25_10155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUD25_10155 PF02824 TGS domain IUD25_10170 PF08443 RimK-like ATP-grasp domain IUD25_10170 PF18030 RimK PreATP-grasp domain IUD25_10175 PF00072 Response regulator receiver domain IUD25_10175 PF00486 Transcriptional regulatory protein, C terminal IUD25_10180 PF00672 HAMP domain IUD25_10180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_10180 PF00512 His Kinase A (phospho-acceptor) domain IUD25_10185 PF01121 Dephospho-CoA kinase IUD25_10190 PF06750 Bacterial Peptidase A24 N-terminal domain IUD25_10190 PF01478 Type IV leader peptidase family IUD25_10195 PF00482 Type II secretion system (T2SS), protein F IUD25_10200 PF00114 Pilin (bacterial filament) IUD25_10200 PF07963 Prokaryotic N-terminal methylation motif IUD25_10210 PF07963 Prokaryotic N-terminal methylation motif IUD25_10210 PF00114 Pilin (bacterial filament) IUD25_10215 PF00437 Type II/IV secretion system protein IUD25_10215 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUD25_10220 PF02954 Bacterial regulatory protein, Fis family IUD25_10220 PF00072 Response regulator receiver domain IUD25_10220 PF00158 Sigma-54 interaction domain IUD25_10225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_10225 PF00512 His Kinase A (phospho-acceptor) domain IUD25_10230 PF08442 ATP-grasp domain IUD25_10230 PF00549 CoA-ligase IUD25_10235 PF02629 CoA binding domain IUD25_10235 PF00549 CoA-ligase IUD25_10245 PF17287 POTRA domain IUD25_10245 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IUD25_10245 PF08479 POTRA domain, ShlB-type IUD25_10255 PF00521 DNA gyrase/topoisomerase IV, subunit A IUD25_10255 PF03989 DNA gyrase C-terminal domain, beta-propeller IUD25_10260 PF01008 Initiation factor 2 subunit family IUD25_10270 PF00152 tRNA synthetases class II (D, K and N) IUD25_10280 PF00533 BRCA1 C Terminus (BRCT) domain IUD25_10280 PF01653 NAD-dependent DNA ligase adenylation domain IUD25_10280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IUD25_10280 PF03120 NAD-dependent DNA ligase OB-fold domain IUD25_10280 PF12826 Helix-hairpin-helix motif IUD25_10285 PF04354 ZipA, C-terminal FtsZ-binding domain IUD25_10290 PF02463 RecF/RecN/SMC N terminal domain IUD25_10295 PF03948 Ribosomal protein L9, C-terminal domain IUD25_10295 PF01281 Ribosomal protein L9, N-terminal domain IUD25_10300 PF01084 Ribosomal protein S18 IUD25_10305 PF01250 Ribosomal protein S6 IUD25_10310 PF01521 Iron-sulphur cluster biosynthesis IUD25_10315 PF01336 OB-fold nucleic acid binding domain IUD25_10315 PF00152 tRNA synthetases class II (D, K and N) IUD25_10320 PF01061 ABC-2 type transporter IUD25_10325 PF00005 ABC transporter IUD25_10340 PF01180 Dihydroorotate dehydrogenase IUD25_10345 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IUD25_10345 PF01565 FAD binding domain IUD25_10350 PF00892 EamA-like transporter family IUD25_10355 PF01569 PAP2 superfamily IUD25_10360 PF04551 GcpE protein IUD25_10370 PF00072 Response regulator receiver domain IUD25_10375 PF00889 Elongation factor TS IUD25_10380 PF00318 Ribosomal protein S2 IUD25_10390 PF00005 ABC transporter IUD25_10390 PF00664 ABC transporter transmembrane region IUD25_10400 PF02321 Outer membrane efflux protein IUD25_10405 PF00149 Calcineurin-like phosphoesterase IUD25_10410 PF02541 Ppx/GppA phosphatase family IUD25_10415 PF13089 Polyphosphate kinase N-terminal domain IUD25_10415 PF02503 Polyphosphate kinase middle domain IUD25_10415 PF17941 Polyphosphate kinase C-terminal domain 1 IUD25_10415 PF13090 Polyphosphate kinase C-terminal domain 2 IUD25_10420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUD25_10420 PF00989 PAS fold IUD25_10420 PF00512 His Kinase A (phospho-acceptor) domain IUD25_10420 PF11808 Phosphate regulon sensor protein PhoR IUD25_10425 PF00072 Response regulator receiver domain IUD25_10425 PF00486 Transcriptional regulatory protein, C terminal IUD25_10430 PF01435 Peptidase family M48 IUD25_10430 PF13181 Tetratricopeptide repeat IUD25_10435 PF00462 Glutaredoxin IUD25_10440 PF18324 Hypothetical protein TT1725 IUD25_10440 PF00180 Isocitrate/isopropylmalate dehydrogenase IUD25_10450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUD25_10450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUD25_10455 PF00884 Sulfatase IUD25_10455 PF11893 Domain of unknown function (DUF3413) IUD25_10460 PF00037 4Fe-4S binding domain IUD25_10460 PF11953 Domain of unknown function (DUF3470) IUD25_10470 PF01106 NifU-like domain IUD25_10475 PF01329 Pterin 4 alpha carbinolamine dehydratase IUD25_10485 PF00849 RNA pseudouridylate synthase IUD25_10485 PF01479 S4 domain IUD25_10490 PF12111 Polyribonucleotide phosphorylase C terminal IUD25_10490 PF10150 Ribonuclease E/G family IUD25_10490 PF00575 S1 RNA binding domain IUD25_10495 PF00072 Response regulator receiver domain IUD25_10495 PF00196 Bacterial regulatory proteins, luxR family IUD25_10500 PF17773 UPF0176 acylphosphatase like domain IUD25_10510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUD25_10510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUD25_10515 PF00545 ribonuclease IUD25_10525 PF12848 ABC transporter IUD25_10525 PF00005 ABC transporter IUD25_10525 PF16326 ABC transporter C-terminal domain IUD25_10535 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IUD25_10540 PF00313 'Cold-shock' DNA-binding domain IUD25_10545 PF00072 Response regulator receiver domain IUD25_10545 PF00990 Diguanylate cyclase, GGDEF domain IUD25_10545 PF00563 EAL domain IUD25_10550 PF01435 Peptidase family M48 IUD25_10555 PF03143 Elongation factor Tu C-terminal domain IUD25_10555 PF03144 Elongation factor Tu domain 2 IUD25_10555 PF00009 Elongation factor Tu GTP binding domain IUD25_10560 PF03144 Elongation factor Tu domain 2 IUD25_10560 PF00679 Elongation factor G C-terminus IUD25_10560 PF14492 Elongation Factor G, domain II IUD25_10560 PF00009 Elongation factor Tu GTP binding domain IUD25_10560 PF03764 Elongation factor G, domain IV IUD25_10565 PF00177 Ribosomal protein S7p/S5e IUD25_10570 PF00164 Ribosomal protein S12/S23 IUD25_10575 PF00623 RNA polymerase Rpb1, domain 2 IUD25_10575 PF04997 RNA polymerase Rpb1, domain 1 IUD25_10575 PF04983 RNA polymerase Rpb1, domain 3 IUD25_10575 PF04998 RNA polymerase Rpb1, domain 5 IUD25_10575 PF05000 RNA polymerase Rpb1, domain 4 IUD25_10580 PF04561 RNA polymerase Rpb2, domain 2 IUD25_10580 PF04560 RNA polymerase Rpb2, domain 7 IUD25_10580 PF04565 RNA polymerase Rpb2, domain 3 IUD25_10580 PF00562 RNA polymerase Rpb2, domain 6 IUD25_10580 PF10385 RNA polymerase beta subunit external 1 domain IUD25_10580 PF04563 RNA polymerase beta subunit IUD25_10585 PF16320 Ribosomal protein L7/L12 dimerisation domain IUD25_10585 PF00542 Ribosomal protein L7/L12 C-terminal domain IUD25_10590 PF00466 Ribosomal protein L10 IUD25_10595 PF00687 Ribosomal protein L1p/L10e family IUD25_10600 PF00298 Ribosomal protein L11, RNA binding domain IUD25_10600 PF03946 Ribosomal protein L11, N-terminal domain IUD25_10605 PF00467 KOW motif IUD25_10605 PF02357 Transcription termination factor nusG IUD25_10620 PF03144 Elongation factor Tu domain 2 IUD25_10620 PF03143 Elongation factor Tu C-terminal domain IUD25_10620 PF00009 Elongation factor Tu GTP binding domain IUD25_10640 PF01926 50S ribosome-binding GTPase IUD25_10640 PF06071 Protein of unknown function (DUF933) IUD25_10645 PF01195 Peptidyl-tRNA hydrolase IUD25_10650 PF01386 Ribosomal L25p family IUD25_10650 PF14693 Ribosomal protein TL5, C-terminal domain IUD25_10655 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IUD25_10655 PF14572 Phosphoribosyl synthetase-associated domain IUD25_10665 PF08544 GHMP kinases C terminal IUD25_10665 PF00288 GHMP kinases N terminal domain IUD25_10670 PF03550 Outer membrane lipoprotein LolB IUD25_10680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IUD25_10680 PF01488 Shikimate / quinate 5-dehydrogenase IUD25_10680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IUD25_10685 PF03462 PCRF domain IUD25_10685 PF00472 RF-1 domain IUD25_10690 PF01170 Putative RNA methylase family UPF0020 IUD25_10690 PF10672 S-adenosylmethionine-dependent methyltransferase IUD25_10690 PF02926 THUMP domain IUD25_10735 PF01914 MarC family integral membrane protein IUD25_10745 PF00462 Glutaredoxin IUD25_10750 PF02222 ATP-grasp domain IUD25_10750 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IUD25_10755 PF00731 AIR carboxylase IUD25_10770 PF07732 Multicopper oxidase IUD25_10770 PF07731 Multicopper oxidase IUD25_10780 PF00580 UvrD/REP helicase N-terminal domain IUD25_10780 PF13361 UvrD-like helicase C-terminal domain IUD25_10785 PF04349 Periplasmic glucan biosynthesis protein, MdoG IUD25_10790 PF01343 Peptidase family S49 IUD25_10795 PF01554 MatE IUD25_10810 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IUD25_10810 PF00270 DEAD/DEAH box helicase IUD25_10810 PF00271 Helicase conserved C-terminal domain IUD25_10810 PF18074 Primosomal protein N C-terminal domain IUD25_10810 PF17764 3′ DNA-binding domain (3′BD) IUD25_10820 PF04545 Sigma-70, region 4 IUD25_10820 PF04542 Sigma-70 region 2 IUD25_10825 PF03167 Uracil DNA glycosylase superfamily IUD25_10830 PF01339 CheB methylesterase IUD25_10830 PF00072 Response regulator receiver domain IUD25_10835 PF18075 FtsX extracellular domain IUD25_10840 PF00005 ABC transporter IUD25_10845 PF00271 Helicase conserved C-terminal domain IUD25_10845 PF12300 ATP-dependent RNA helicase RhlB IUD25_10845 PF00270 DEAD/DEAH box helicase IUD25_10850 PF00085 Thioredoxin IUD25_10855 PF07497 Rho termination factor, RNA-binding domain IUD25_10855 PF07498 Rho termination factor, N-terminal domain IUD25_10855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUD25_10860 PF03971 Monomeric isocitrate dehydrogenase IUD25_10870 PF03572 Peptidase family S41 IUD25_10870 PF13180 PDZ domain IUD25_10875 PF01551 Peptidase family M23 IUD25_10890 PF00150 Cellulase (glycosyl hydrolase family 5) IUD25_10895 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUD25_10895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUD25_10900 PF01493 GXGXG motif IUD25_10900 PF04898 Glutamate synthase central domain IUD25_10900 PF01645 Conserved region in glutamate synthase IUD25_10900 PF00310 Glutamine amidotransferases class-II IUD25_10905 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUD25_10905 PF03807 NADP oxidoreductase coenzyme F420-dependent IUD25_10950 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IUD25_10950 PF11867 Domain of unknown function (DUF3387) IUD25_10950 PF18766 SWI2/SNF2 ATPase IUD25_10960 PF12161 HsdM N-terminal domain IUD25_10960 PF02384 N-6 DNA Methylase IUD25_10970 PF18766 SWI2/SNF2 ATPase IUD25_10970 PF12008 Type I restriction and modification enzyme - subunit R C terminal IUD25_10970 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IUD25_10975 PF01420 Type I restriction modification DNA specificity domain IUD25_10985 PF12161 HsdM N-terminal domain IUD25_10985 PF02384 N-6 DNA Methylase IUD25_10990 PF01810 LysE type translocator IUD25_11000 PF11855 Protein of unknown function (DUF3375) IUD25_11095 PF06594 Haemolysin-type calcium binding protein related domain IUD25_11095 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IUD25_11110 PF06594 Haemolysin-type calcium binding protein related domain IUD25_11110 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IUD25_11145 PF01381 Helix-turn-helix IUD25_11150 PF05973 Phage derived protein Gp49-like (DUF891) IUD25_11220 PF13018 Extended Signal Peptide of Type V secretion system IUD25_11220 PF13332 Hemagglutinin repeat IUD25_11220 PF04829 Pre-toxin domain with VENN motif IUD25_11220 PF05860 haemagglutination activity domain IUD25_11225 PF01926 50S ribosome-binding GTPase IUD25_11225 PF10396 GTP-binding protein TrmE N-terminus IUD25_11225 PF12631 MnmE helical domain IUD25_11235 PF14849 YidC periplasmic domain IUD25_11235 PF02096 60Kd inner membrane protein IUD25_11240 PF00825 Ribonuclease P IUD25_11245 PF00468 Ribosomal protein L34 IUD25_11255 PF03135 CagE, TrbE, VirB family, component of type IV transporter system IUD25_11265 PF03524 Conjugal transfer protein IUD25_11275 PF03743 Bacterial conjugation TrbI-like protein IUD25_11310 PF00239 Resolvase, N terminal domain IUD25_11335 PF13362 Toprim domain IUD25_11335 PF18818 Metallopeptidase superfamily domain IUD25_11335 PF08401 Domain of unknown function (DUF1738) IUD25_11345 PF01131 DNA topoisomerase IUD25_11345 PF01751 Toprim domain IUD25_11350 PF10502 Signal peptidase, peptidase S26 IUD25_11355 PF02534 Type IV secretory system Conjugative DNA transfer IUD25_11360 PF18821 Large polyvalent protein-associated domain 7 IUD25_11360 PF03432 Relaxase/Mobilisation nuclease domain IUD25_11375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUD25_11380 PF11657 Transcriptional activator TraM IUD25_11395 PF02195 ParB-like nuclease domain IUD25_11395 PF08535 KorB domain IUD25_11395 PF06613 KorB C-terminal beta-barrel domain IUD25_11400 PF13614 AAA domain IUD25_11405 PF16509 TrfB plasmid transcriptional repressor IUD25_11415 PF12323 Helix-turn-helix domain IUD25_11415 PF01385 Probable transposase IUD25_11415 PF07282 Putative transposase DNA-binding domain IUD25_11420 PF17394 Uncharacterized KleE stable inheritance protein IUD25_11435 PF00436 Single-strand binding protein family IUD25_11440 PF16509 TrfB plasmid transcriptional repressor IUD25_11445 PF00437 Type II/IV secretion system protein