locus-tag class description D934_00005 PF02321 Outer membrane efflux protein D934_00010 PF00149 Calcineurin-like phosphoesterase D934_00020 PF02541 Ppx/GppA phosphatase family D934_00025 PF17941 Polyphosphate kinase C-terminal domain 1 D934_00025 PF13090 Polyphosphate kinase C-terminal domain 2 D934_00025 PF13089 Polyphosphate kinase N-terminal domain D934_00025 PF02503 Polyphosphate kinase middle domain D934_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_00030 PF11808 Phosphate regulon sensor protein PhoR D934_00030 PF00989 PAS fold D934_00030 PF00512 His Kinase A (phospho-acceptor) domain D934_00035 PF00072 Response regulator receiver domain D934_00035 PF00486 Transcriptional regulatory protein, C terminal D934_00040 PF13181 Tetratricopeptide repeat D934_00040 PF01435 Peptidase family M48 D934_00045 PF00462 Glutaredoxin D934_00050 PF00180 Isocitrate/isopropylmalate dehydrogenase D934_00050 PF18324 Hypothetical protein TT1725 D934_00060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D934_00060 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D934_00065 PF00884 Sulfatase D934_00065 PF11893 Domain of unknown function (DUF3413) D934_00070 PF11953 Domain of unknown function (DUF3470) D934_00070 PF00037 4Fe-4S binding domain D934_00080 PF01106 NifU-like domain D934_00085 PF01329 Pterin 4 alpha carbinolamine dehydratase D934_00095 PF01479 S4 domain D934_00095 PF00849 RNA pseudouridylate synthase D934_00100 PF12111 Polyribonucleotide phosphorylase C terminal D934_00100 PF10150 Ribonuclease E/G family D934_00100 PF00575 S1 RNA binding domain D934_00105 PF00196 Bacterial regulatory proteins, luxR family D934_00105 PF00072 Response regulator receiver domain D934_00120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D934_00120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D934_00125 PF00545 ribonuclease D934_00145 PF02696 Uncharacterized ACR, YdiU/UPF0061 family D934_00150 PF00313 'Cold-shock' DNA-binding domain D934_00155 PF00072 Response regulator receiver domain D934_00155 PF00990 Diguanylate cyclase, GGDEF domain D934_00155 PF00563 EAL domain D934_00160 PF01435 Peptidase family M48 D934_00165 PF03143 Elongation factor Tu C-terminal domain D934_00165 PF03144 Elongation factor Tu domain 2 D934_00165 PF00009 Elongation factor Tu GTP binding domain D934_00170 PF03144 Elongation factor Tu domain 2 D934_00170 PF00009 Elongation factor Tu GTP binding domain D934_00170 PF03764 Elongation factor G, domain IV D934_00170 PF14492 Elongation Factor G, domain II D934_00170 PF00679 Elongation factor G C-terminus D934_00175 PF00177 Ribosomal protein S7p/S5e D934_00180 PF00164 Ribosomal protein S12/S23 D934_00185 PF05000 RNA polymerase Rpb1, domain 4 D934_00185 PF04983 RNA polymerase Rpb1, domain 3 D934_00185 PF00623 RNA polymerase Rpb1, domain 2 D934_00185 PF04997 RNA polymerase Rpb1, domain 1 D934_00185 PF04998 RNA polymerase Rpb1, domain 5 D934_00190 PF00562 RNA polymerase Rpb2, domain 6 D934_00190 PF10385 RNA polymerase beta subunit external 1 domain D934_00190 PF04565 RNA polymerase Rpb2, domain 3 D934_00190 PF04561 RNA polymerase Rpb2, domain 2 D934_00190 PF04563 RNA polymerase beta subunit D934_00190 PF04560 RNA polymerase Rpb2, domain 7 D934_00195 PF00542 Ribosomal protein L7/L12 C-terminal domain D934_00195 PF16320 Ribosomal protein L7/L12 dimerisation domain D934_00200 PF00466 Ribosomal protein L10 D934_00205 PF00687 Ribosomal protein L1p/L10e family D934_00210 PF00298 Ribosomal protein L11, RNA binding domain D934_00210 PF03946 Ribosomal protein L11, N-terminal domain D934_00215 PF00467 KOW motif D934_00215 PF02357 Transcription termination factor nusG D934_00230 PF03144 Elongation factor Tu domain 2 D934_00230 PF00009 Elongation factor Tu GTP binding domain D934_00230 PF03143 Elongation factor Tu C-terminal domain D934_00255 PF01926 50S ribosome-binding GTPase D934_00255 PF06071 Protein of unknown function (DUF933) D934_00260 PF01195 Peptidyl-tRNA hydrolase D934_00265 PF14693 Ribosomal protein TL5, C-terminal domain D934_00265 PF01386 Ribosomal L25p family D934_00270 PF14572 Phosphoribosyl synthetase-associated domain D934_00270 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D934_00280 PF00288 GHMP kinases N terminal domain D934_00280 PF08544 GHMP kinases C terminal D934_00285 PF03550 Outer membrane lipoprotein LolB D934_00295 PF01488 Shikimate / quinate 5-dehydrogenase D934_00295 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D934_00295 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D934_00300 PF00472 RF-1 domain D934_00300 PF03462 PCRF domain D934_00360 PF01914 MarC family integral membrane protein D934_00365 PF00462 Glutaredoxin D934_00370 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D934_00370 PF02222 ATP-grasp domain D934_00375 PF00731 AIR carboxylase D934_00395 PF07732 Multicopper oxidase D934_00395 PF07731 Multicopper oxidase D934_00405 PF13361 UvrD-like helicase C-terminal domain D934_00405 PF00580 UvrD/REP helicase N-terminal domain D934_00410 PF04349 Periplasmic glucan biosynthesis protein, MdoG D934_00415 PF01343 Peptidase family S49 D934_00420 PF01554 MatE D934_00435 PF17764 3′ DNA-binding domain (3′BD) D934_00435 PF00271 Helicase conserved C-terminal domain D934_00435 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D934_00435 PF18074 Primosomal protein N C-terminal domain D934_00435 PF00270 DEAD/DEAH box helicase D934_00440 PF04542 Sigma-70 region 2 D934_00440 PF04545 Sigma-70, region 4 D934_00445 PF03167 Uracil DNA glycosylase superfamily D934_00450 PF00072 Response regulator receiver domain D934_00450 PF01339 CheB methylesterase D934_00455 PF18075 FtsX extracellular domain D934_00460 PF00005 ABC transporter D934_00465 PF00270 DEAD/DEAH box helicase D934_00465 PF00271 Helicase conserved C-terminal domain D934_00465 PF12300 ATP-dependent RNA helicase RhlB D934_00470 PF00085 Thioredoxin D934_00475 PF07498 Rho termination factor, N-terminal domain D934_00475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_00475 PF07497 Rho termination factor, RNA-binding domain D934_00480 PF03971 Monomeric isocitrate dehydrogenase D934_00485 PF03572 Peptidase family S41 D934_00485 PF13180 PDZ domain D934_00490 PF01551 Peptidase family M23 D934_00505 PF00150 Cellulase (glycosyl hydrolase family 5) D934_00515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D934_00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_00520 PF00310 Glutamine amidotransferases class-II D934_00520 PF04898 Glutamate synthase central domain D934_00520 PF01645 Conserved region in glutamate synthase D934_00520 PF01493 GXGXG motif D934_00525 PF03807 NADP oxidoreductase coenzyme F420-dependent D934_00525 PF14748 Pyrroline-5-carboxylate reductase dimerisation D934_00570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D934_00570 PF11867 Domain of unknown function (DUF3387) D934_00570 PF18766 SWI2/SNF2 ATPase D934_00585 PF02384 N-6 DNA Methylase D934_00585 PF12161 HsdM N-terminal domain D934_00600 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D934_00600 PF18766 SWI2/SNF2 ATPase D934_00600 PF12008 Type I restriction and modification enzyme - subunit R C terminal D934_00605 PF01420 Type I restriction modification DNA specificity domain D934_00610 PF01420 Type I restriction modification DNA specificity domain D934_00620 PF02384 N-6 DNA Methylase D934_00620 PF12161 HsdM N-terminal domain D934_00625 PF01810 LysE type translocator D934_00640 PF11855 Protein of unknown function (DUF3375) D934_00745 PF06594 Haemolysin-type calcium binding protein related domain D934_00745 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D934_00810 PF05860 haemagglutination activity domain D934_00810 PF13332 Hemagglutinin repeat D934_00810 PF04829 Pre-toxin domain with VENN motif D934_00890 PF10396 GTP-binding protein TrmE N-terminus D934_00890 PF01926 50S ribosome-binding GTPase D934_00890 PF12631 MnmE helical domain D934_00900 PF14849 YidC periplasmic domain D934_00900 PF02096 60Kd inner membrane protein D934_00905 PF00825 Ribonuclease P D934_00910 PF00468 Ribosomal protein L34 D934_00915 PF00308 Bacterial dnaA protein D934_00915 PF11638 DnaA N-terminal domain D934_00915 PF08299 Bacterial dnaA protein helix-turn-helix D934_00920 PF00712 DNA polymerase III beta subunit, N-terminal domain D934_00920 PF02768 DNA polymerase III beta subunit, C-terminal domain D934_00920 PF02767 DNA polymerase III beta subunit, central domain D934_00925 PF02463 RecF/RecN/SMC N terminal domain D934_00935 PF01751 Toprim domain D934_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_00935 PF18053 DNA gyrase B subunit insert domain D934_00935 PF00986 DNA gyrase B subunit, carboxyl terminus D934_00935 PF00204 DNA gyrase B D934_00945 PF01435 Peptidase family M48 D934_00955 PF03544 Gram-negative bacterial TonB protein C-terminal D934_00960 PF01618 MotA/TolQ/ExbB proton channel family D934_00965 PF02472 Biopolymer transport protein ExbD/TolR D934_00970 PF02472 Biopolymer transport protein ExbD/TolR D934_00985 PF01218 Coproporphyrinogen III oxidase D934_01010 PF00793 DAHP synthetase I family D934_01040 PF05567 Neisseria PilC beta-propeller domain D934_01050 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D934_01055 PF00155 Aminotransferase class I and II D934_01065 PF01741 Large-conductance mechanosensitive channel, MscL D934_01080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D934_01090 PF17757 UvrB interaction domain D934_01090 PF03461 TRCF domain D934_01090 PF00271 Helicase conserved C-terminal domain D934_01090 PF00270 DEAD/DEAH box helicase D934_01090 PF02559 CarD-like/TRCF domain D934_01100 PF01220 Dehydroquinase class II D934_01105 PF00364 Biotin-requiring enzyme D934_01110 PF02785 Biotin carboxylase C-terminal domain D934_01110 PF00289 Biotin carboxylase, N-terminal domain D934_01110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D934_01115 PF13361 UvrD-like helicase C-terminal domain D934_01115 PF00580 UvrD/REP helicase N-terminal domain D934_01125 PF00970 Oxidoreductase FAD-binding domain D934_01125 PF00042 Globin D934_01125 PF00175 Oxidoreductase NAD-binding domain D934_01135 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D934_01140 PF08535 KorB domain D934_01140 PF06613 KorB C-terminal beta-barrel domain D934_01140 PF02195 ParB-like nuclease domain D934_01160 PF04055 Radical SAM superfamily D934_01160 PF06968 Biotin and Thiamin Synthesis associated domain D934_01165 PF01734 Patatin-like phospholipase D934_01170 PF01040 UbiA prenyltransferase family D934_01215 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D934_01215 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D934_01220 PF01578 Cytochrome C assembly protein D934_01225 PF00448 SRP54-type protein, GTPase domain D934_01225 PF02881 SRP54-type protein, helical bundle domain D934_01225 PF02978 Signal peptide binding domain D934_01245 PF00419 Fimbrial protein D934_01250 PF13953 PapC C-terminal domain D934_01250 PF00577 Outer membrane usher protein D934_01250 PF13954 PapC N-terminal domain D934_01255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D934_01255 PF02753 Pili assembly chaperone PapD, C-terminal domain D934_01260 PF16970 Type-1 fimbrial protein, A D934_01270 PF02464 Competence-damaged protein D934_01275 PF00083 Sugar (and other) transporter D934_01280 PF01926 50S ribosome-binding GTPase D934_01280 PF13167 GTP-binding GTPase N-terminal D934_01280 PF16360 GTP-binding GTPase Middle Region D934_01285 PF17209 Hfq protein D934_01295 PF00809 Pterin binding enzyme D934_01305 PF01434 Peptidase family M41 D934_01305 PF17862 AAA+ lid domain D934_01305 PF06480 FtsH Extracellular D934_01305 PF00004 ATPase family associated with various cellular activities (AAA) D934_01310 PF01728 FtsJ-like methyltransferase D934_01315 PF01985 CRS1 / YhbY (CRM) domain D934_01325 PF00920 Dehydratase family D934_01345 PF03279 Bacterial lipid A biosynthesis acyltransferase D934_01350 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D934_01360 PF00886 Ribosomal protein S16 D934_01365 PF01782 RimM N-terminal domain D934_01365 PF05239 PRC-barrel domain D934_01370 PF01746 tRNA (Guanine-1)-methyltransferase D934_01375 PF01245 Ribosomal protein L19 D934_01380 PF00557 Metallopeptidase family M24 D934_01390 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D934_01390 PF14602 Hexapeptide repeat of succinyl-transferase D934_01390 PF00132 Bacterial transferase hexapeptide (six repeats) D934_01395 PF03960 ArsC family D934_01400 PF01546 Peptidase family M20/M25/M40 D934_01400 PF07687 Peptidase dimerisation domain D934_01410 PF00733 Asparagine synthase D934_01410 PF13537 Glutamine amidotransferase domain D934_01420 PF03060 Nitronate monooxygenase D934_01430 PF01726 LexA DNA binding domain D934_01430 PF00717 Peptidase S24-like D934_01435 PF00154 recA bacterial DNA recombination protein D934_01440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D934_01440 PF02272 DHHA1 domain D934_01440 PF01411 tRNA synthetases class II (A) D934_01445 PF02599 Global regulator protein family D934_01455 PF01432 Peptidase family M3 D934_01470 PF00394 Multicopper oxidase D934_01470 PF07731 Multicopper oxidase D934_01470 PF07732 Multicopper oxidase D934_01475 PF05275 Copper resistance protein B precursor (CopB) D934_01485 PF00133 tRNA synthetases class I (I, L, M and V) D934_01485 PF10458 Valyl tRNA synthetase tRNA binding arm D934_01485 PF08264 Anticodon-binding domain of tRNA D934_01505 PF00883 Cytosol aminopeptidase family, catalytic domain D934_01505 PF02789 Cytosol aminopeptidase family, N-terminal domain D934_01530 PF01380 SIS domain D934_01540 PF17284 Spermidine synthase tetramerisation domain D934_01545 PF17944 Arginine decarboxylase C-terminal helical extension D934_01545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D934_01545 PF17810 Arginine decarboxylase helical bundle domain D934_01560 PF05746 DALR anticodon binding domain D934_01560 PF03485 Arginyl tRNA synthetase N terminal domain D934_01560 PF00750 tRNA synthetases class I (R) D934_01565 PF04002 RadC-like JAB domain D934_01570 PF04127 DNA / pantothenate metabolism flavoprotein D934_01570 PF02441 Flavoprotein D934_01575 PF00692 dUTPase D934_01580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_01580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_01580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_01580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_01590 PF00156 Phosphoribosyl transferase domain D934_01635 PF07690 Major Facilitator Superfamily D934_01640 PF03702 Anhydro-N-acetylmuramic acid kinase D934_01645 PF01551 Peptidase family M23 D934_01645 PF04225 Opacity-associated protein A LysM-like domain D934_01650 PF00579 tRNA synthetases class I (W and Y) D934_01680 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D934_01680 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D934_01685 PF01578 Cytochrome C assembly protein D934_01700 PF16658 Class II release factor RF3, C-terminal domain D934_01700 PF00009 Elongation factor Tu GTP binding domain D934_01705 PF03006 Haemolysin-III related D934_01710 PF00535 Glycosyl transferase family 2 D934_01715 PF01026 TatD related DNase D934_01735 PF01597 Glycine cleavage H-protein D934_01745 PF08669 Glycine cleavage T-protein C-terminal barrel domain D934_01745 PF01571 Aminomethyltransferase folate-binding domain D934_01755 PF16200 C-terminal region of band_7 D934_01755 PF01145 SPFH domain / Band 7 family D934_01760 PF03819 MazG nucleotide pyrophosphohydrolase domain D934_01765 PF00459 Inositol monophosphatase family D934_01770 PF00293 NUDIX domain D934_01775 PF00202 Aminotransferase class-III D934_01780 PF04452 RNA methyltransferase D934_01785 PF00270 DEAD/DEAH box helicase D934_01785 PF00271 Helicase conserved C-terminal domain D934_01790 PF01242 6-pyruvoyl tetrahydropterin synthase D934_01825 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D934_01830 PF02811 PHP domain D934_01830 PF07733 Bacterial DNA polymerase III alpha NTPase domain D934_01830 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D934_01830 PF14579 Helix-hairpin-helix motif D934_01830 PF01336 OB-fold nucleic acid binding domain D934_01835 PF01259 SAICAR synthetase D934_01840 PF01556 DnaJ C terminal domain D934_01840 PF00684 DnaJ central domain D934_01840 PF00226 DnaJ domain D934_01845 PF00834 Ribulose-phosphate 3 epimerase family D934_01850 PF04715 Anthranilate synthase component I, N terminal region D934_01850 PF00425 chorismate binding enzyme D934_01855 PF00117 Glutamine amidotransferase class-I D934_01860 PF00591 Glycosyl transferase family, a/b domain D934_01860 PF02885 Glycosyl transferase family, helical bundle domain D934_01865 PF00218 Indole-3-glycerol phosphate synthase D934_01885 PF01321 Creatinase/Prolidase N-terminal domain D934_01885 PF00557 Metallopeptidase family M24 D934_01900 PF01702 Queuine tRNA-ribosyltransferase D934_01905 PF02699 Preprotein translocase subunit D934_01910 PF07549 SecD/SecF GG Motif D934_01910 PF13721 SecD export protein N-terminal TM region D934_01910 PF02355 Protein export membrane protein D934_01915 PF02355 Protein export membrane protein D934_01915 PF07549 SecD/SecF GG Motif D934_01925 PF12627 Probable RNA and SrmB- binding site of polymerase A D934_01925 PF01743 Poly A polymerase head domain D934_01925 PF12626 Polymerase A arginine-rich C-terminus D934_01930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D934_01935 PF02548 Ketopantoate hydroxymethyltransferase D934_01940 PF02569 Pantoate-beta-alanine ligase D934_01945 PF02261 Aspartate decarboxylase D934_01950 PF00342 Phosphoglucose isomerase D934_01960 PF02576 RimP N-terminal domain D934_01960 PF17384 RimP C-terminal SH3 domain D934_01965 PF00575 S1 RNA binding domain D934_01965 PF08529 NusA N-terminal domain D934_01965 PF13184 NusA-like KH domain D934_01970 PF04760 Translation initiation factor IF-2, N-terminal region D934_01970 PF08364 Bacterial translation initiation factor IF-2 associated region D934_01970 PF11987 Translation-initiation factor 2 D934_01970 PF00009 Elongation factor Tu GTP binding domain D934_01975 PF02033 Ribosome-binding factor A D934_01980 PF16198 tRNA pseudouridylate synthase B C-terminal domain D934_01980 PF01509 TruB family pseudouridylate synthase (N terminal domain) D934_01980 PF09157 Pseudouridine synthase II TruB, C-terminal D934_01985 PF00312 Ribosomal protein S15 D934_01990 PF03725 3' exoribonuclease family, domain 2 D934_01990 PF01138 3' exoribonuclease family, domain 1 D934_01990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D934_01990 PF00013 KH domain D934_01990 PF00575 S1 RNA binding domain D934_01995 PF01638 HxlR-like helix-turn-helix D934_02005 PF00873 AcrB/AcrD/AcrF family D934_02035 PF03880 DbpA RNA binding domain D934_02035 PF00271 Helicase conserved C-terminal domain D934_02035 PF00270 DEAD/DEAH box helicase D934_02045 PF00766 Electron transfer flavoprotein FAD-binding domain D934_02045 PF01012 Electron transfer flavoprotein domain D934_02050 PF01012 Electron transfer flavoprotein domain D934_02055 PF16363 GDP-mannose 4,6 dehydratase D934_02060 PF00483 Nucleotidyl transferase D934_02065 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D934_02070 PF04321 RmlD substrate binding domain D934_02075 PF01050 Mannose-6-phosphate isomerase D934_02075 PF00483 Nucleotidyl transferase D934_02080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_02080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_02080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_02080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_02105 PF03797 Autotransporter beta-domain D934_02105 PF00082 Subtilase family D934_02115 PF06779 Uncharacterised MFS-type transporter YbfB D934_02130 PF00365 Phosphofructokinase D934_02140 PF08245 Mur ligase middle domain D934_02140 PF02875 Mur ligase family, glutamate ligase domain D934_02140 PF01225 Mur ligase family, catalytic domain D934_02145 PF01569 PAP2 superfamily D934_02160 PF02789 Cytosol aminopeptidase family, N-terminal domain D934_02160 PF00883 Cytosol aminopeptidase family, catalytic domain D934_02165 PF01594 AI-2E family transporter D934_02185 PF00595 PDZ domain D934_02190 PF01370 NAD dependent epimerase/dehydratase family D934_02190 PF08338 Domain of unknown function (DUF1731) D934_02195 PF00501 AMP-binding enzyme D934_02195 PF13193 AMP-binding enzyme C-terminal domain D934_02205 PF00694 Aconitase C-terminal domain D934_02205 PF00330 Aconitase family (aconitate hydratase) D934_02220 PF11791 Aconitate B N-terminal domain D934_02220 PF00330 Aconitase family (aconitate hydratase) D934_02220 PF06434 Aconitate hydratase 2 N-terminus D934_02270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D934_02285 PF00121 Triosephosphate isomerase D934_02300 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D934_02305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D934_02310 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D934_02315 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D934_02325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D934_02325 PF10531 SLBB domain D934_02325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D934_02330 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal D934_02330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D934_02330 PF00384 Molybdopterin oxidoreductase D934_02335 PF00146 NADH dehydrogenase D934_02340 PF12838 4Fe-4S dicluster domain D934_02345 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D934_02350 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D934_02355 PF00361 Proton-conducting membrane transporter D934_02355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D934_02360 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D934_02360 PF00361 Proton-conducting membrane transporter D934_02365 PF00361 Proton-conducting membrane transporter D934_02370 PF00106 short chain dehydrogenase D934_02375 PF03600 Citrate transporter D934_02385 PF00486 Transcriptional regulatory protein, C terminal D934_02385 PF00072 Response regulator receiver domain D934_02390 PF00512 His Kinase A (phospho-acceptor) domain D934_02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02390 PF08521 Two-component sensor kinase N-terminal D934_02405 PF00196 Bacterial regulatory proteins, luxR family D934_02405 PF00072 Response regulator receiver domain D934_02410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02410 PF00512 His Kinase A (phospho-acceptor) domain D934_02410 PF00072 Response regulator receiver domain D934_02410 PF09456 RcsC Alpha-Beta-Loop (ABL) D934_02420 PF00375 Sodium:dicarboxylate symporter family D934_02425 PF00390 Malic enzyme, N-terminal domain D934_02425 PF03949 Malic enzyme, NAD binding domain D934_02425 PF01515 Phosphate acetyl/butaryl transferase D934_02430 PF00183 Hsp90 protein D934_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02440 PF01467 Cytidylyltransferase-like D934_02450 PF00037 4Fe-4S binding domain D934_02465 PF00990 Diguanylate cyclase, GGDEF domain D934_02465 PF05230 MASE2 domain D934_02470 PF08460 Bacterial SH3 domain D934_02470 PF01551 Peptidase family M23 D934_02475 PF01979 Amidohydrolase family D934_02480 PF01809 Putative membrane protein insertion efficiency factor D934_02485 PF01258 Prokaryotic dksA/traR C4-type zinc finger D934_02495 PF05977 Transmembrane secretion effector D934_02500 PF02657 Fe-S metabolism associated domain D934_02505 PF09190 DALR domain D934_02505 PF01406 tRNA synthetases class I (C) catalytic domain D934_02520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D934_02520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D934_02525 PF00764 Arginosuccinate synthase D934_02530 PF07687 Peptidase dimerisation domain D934_02530 PF01546 Peptidase family M20/M25/M40 D934_02535 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase D934_02535 PF00696 Amino acid kinase family D934_02540 PF01118 Semialdehyde dehydrogenase, NAD binding domain D934_02545 PF00206 Lyase D934_02550 PF00696 Amino acid kinase family D934_02550 PF01472 PUA domain D934_02595 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D934_02595 PF06594 Haemolysin-type calcium binding protein related domain D934_02600 PF14437 MafB19-like deaminase D934_02605 PF02742 Iron dependent repressor, metal binding and dimerisation domain D934_02605 PF01325 Iron dependent repressor, N-terminal DNA binding domain D934_02610 PF01566 Natural resistance-associated macrophage protein D934_02615 PF04376 Arginine-tRNA-protein transferase, N terminus D934_02615 PF04377 Arginine-tRNA-protein transferase, C terminus D934_02640 PF00082 Subtilase family D934_02640 PF03797 Autotransporter beta-domain D934_02640 PF12951 Passenger-associated-transport-repeat D934_02655 PF01553 Acyltransferase D934_02675 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D934_02675 PF05221 S-adenosyl-L-homocysteine hydrolase D934_02690 PF01351 Ribonuclease HII D934_02695 PF02684 Lipid-A-disaccharide synthetase D934_02700 PF00132 Bacterial transferase hexapeptide (six repeats) D934_02700 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D934_02705 PF07977 FabA-like domain D934_02710 PF00132 Bacterial transferase hexapeptide (six repeats) D934_02710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D934_02715 PF07244 Surface antigen variable number repeat D934_02715 PF01103 Surface antigen D934_02720 PF02163 Peptidase family M50 D934_02720 PF17820 PDZ domain D934_02725 PF13288 DXP reductoisomerase C-terminal domain D934_02725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D934_02725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D934_02735 PF01255 Putative undecaprenyl diphosphate synthase D934_02740 PF01765 Ribosome recycling factor D934_02745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D934_02765 PF00696 Amino acid kinase family D934_02790 PF01081 KDPG and KHG aldolase D934_02795 PF00920 Dehydratase family D934_02800 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D934_02805 PF02685 Glucokinase D934_02810 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D934_02810 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D934_02815 PF17912 MalK OB fold domain D934_02815 PF00005 ABC transporter D934_02820 PF01571 Aminomethyltransferase folate-binding domain D934_02830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D934_02835 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D934_02840 PF02910 Fumarate reductase flavoprotein C-term D934_02840 PF00890 FAD binding domain D934_02845 PF13085 2Fe-2S iron-sulfur cluster binding domain D934_02850 PF03937 Flavinator of succinate dehydrogenase D934_02860 PF02687 FtsX-like permease family D934_02860 PF12704 MacB-like periplasmic core domain D934_02865 PF00005 ABC transporter D934_02870 PF00753 Metallo-beta-lactamase superfamily D934_02870 PF03772 Competence protein D934_02875 PF01618 MotA/TolQ/ExbB proton channel family D934_02885 PF00664 ABC transporter transmembrane region D934_02885 PF00005 ABC transporter D934_02890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D934_02925 PF17482 Phage tail sheath C-terminal domain D934_02925 PF04984 Phage tail sheath protein subtilisin-like domain D934_02950 PF04221 RelB antitoxin D934_02955 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D934_03030 PF04264 YceI-like domain D934_03035 PF13091 PLD-like domain D934_03060 PF03358 NADPH-dependent FMN reductase D934_03065 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D934_03065 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D934_03090 PF01367 5'-3' exonuclease, C-terminal SAM fold D934_03090 PF01612 3'-5' exonuclease D934_03090 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D934_03090 PF00476 DNA polymerase family A D934_03100 PF01113 Dihydrodipicolinate reductase, N-terminus D934_03100 PF05173 Dihydrodipicolinate reductase, C-terminus D934_03105 PF00117 Glutamine amidotransferase class-I D934_03105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D934_03110 PF02142 MGS-like domain D934_03110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D934_03110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D934_03115 PF03449 Transcription elongation factor, N-terminal D934_03115 PF01272 Transcription elongation factor, GreA/GreB, C-term D934_03125 PF17768 RecJ OB domain D934_03125 PF02272 DHHA1 domain D934_03125 PF01368 DHH family D934_03130 PF03462 PCRF domain D934_03130 PF00472 RF-1 domain D934_03135 PF01336 OB-fold nucleic acid binding domain D934_03135 PF00152 tRNA synthetases class II (D, K and N) D934_03145 PF00072 Response regulator receiver domain D934_03145 PF01627 Hpt domain D934_03145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_03145 PF00512 His Kinase A (phospho-acceptor) domain D934_03150 PF00378 Enoyl-CoA hydratase/isomerase D934_03155 PF00696 Amino acid kinase family D934_03155 PF01842 ACT domain D934_03165 PF08245 Mur ligase middle domain D934_03180 PF00293 NUDIX domain D934_03185 PF02219 Methylenetetrahydrofolate reductase D934_03195 PF02545 Maf-like protein D934_03200 PF00575 S1 RNA binding domain D934_03200 PF10150 Ribonuclease E/G family D934_03215 PF01523 Putative modulator of DNA gyrase D934_03225 PF04751 Protein of unknown function (DUF615) D934_03230 PF01523 Putative modulator of DNA gyrase D934_03235 PF03466 LysR substrate binding domain D934_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_03240 PF03358 NADPH-dependent FMN reductase D934_03250 PF08240 Alcohol dehydrogenase GroES-like domain D934_03250 PF00107 Zinc-binding dehydrogenase D934_03265 PF12804 MobA-like NTP transferase domain D934_03265 PF00132 Bacterial transferase hexapeptide (six repeats) D934_03265 PF14602 Hexapeptide repeat of succinyl-transferase D934_03275 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D934_03275 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D934_03280 PF02874 ATP synthase alpha/beta family, beta-barrel domain D934_03280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_03285 PF00231 ATP synthase D934_03290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_03290 PF00306 ATP synthase alpha/beta chain, C terminal domain D934_03290 PF02874 ATP synthase alpha/beta family, beta-barrel domain D934_03295 PF00213 ATP synthase delta (OSCP) subunit D934_03300 PF00430 ATP synthase B/B' CF(0) D934_03305 PF00137 ATP synthase subunit C D934_03310 PF00119 ATP synthase A chain D934_03320 PF00338 Ribosomal protein S10p/S20e D934_03325 PF00297 Ribosomal protein L3 D934_03330 PF00573 Ribosomal protein L4/L1 family D934_03335 PF00181 Ribosomal Proteins L2, RNA binding domain D934_03335 PF03947 Ribosomal Proteins L2, C-terminal domain D934_03340 PF00203 Ribosomal protein S19 D934_03345 PF00237 Ribosomal protein L22p/L17e D934_03350 PF07650 KH domain D934_03350 PF00189 Ribosomal protein S3, C-terminal domain D934_03355 PF00252 Ribosomal protein L16p/L10e D934_03360 PF00831 Ribosomal L29 protein D934_03365 PF00366 Ribosomal protein S17 D934_03370 PF00238 Ribosomal protein L14p/L23e D934_03375 PF00467 KOW motif D934_03375 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D934_03380 PF00673 ribosomal L5P family C-terminus D934_03380 PF00281 Ribosomal protein L5 D934_03385 PF00253 Ribosomal protein S14p/S29e D934_03390 PF00410 Ribosomal protein S8 D934_03395 PF00347 Ribosomal protein L6 D934_03400 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D934_03405 PF03719 Ribosomal protein S5, C-terminal domain D934_03405 PF00333 Ribosomal protein S5, N-terminal domain D934_03410 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D934_03415 PF00344 SecY translocase D934_03420 PF00416 Ribosomal protein S13/S18 D934_03425 PF00411 Ribosomal protein S11 D934_03430 PF01479 S4 domain D934_03430 PF00163 Ribosomal protein S4/S9 N-terminal domain D934_03435 PF01000 RNA polymerase Rpb3/RpoA insert domain D934_03435 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D934_03435 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D934_03440 PF01196 Ribosomal protein L17 D934_03445 PF04380 Membrane fusogenic activity D934_03450 PF01078 Magnesium chelatase, subunit ChlI D934_03450 PF13335 Magnesium chelatase, subunit ChlI C-terminal D934_03460 PF00561 alpha/beta hydrolase fold D934_03465 PF03280 Proteobacterial lipase chaperone protein D934_03475 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D934_03475 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D934_03475 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D934_03490 PF05698 Bacterial trigger factor protein (TF) C-terminus D934_03490 PF05697 Bacterial trigger factor protein (TF) D934_03495 PF00574 Clp protease D934_03500 PF10431 C-terminal, D2-small domain, of ClpB protein D934_03500 PF07724 AAA domain (Cdc48 subfamily) D934_03500 PF06689 ClpX C4-type zinc finger D934_03505 PF02190 ATP-dependent protease La (LON) substrate-binding domain D934_03505 PF05362 Lon protease (S16) C-terminal proteolytic domain D934_03505 PF00004 ATPase family associated with various cellular activities (AAA) D934_03510 PF00216 Bacterial DNA-binding protein D934_03540 PF00317 Ribonucleotide reductase, all-alpha domain D934_03540 PF02867 Ribonucleotide reductase, barrel domain D934_03540 PF03477 ATP cone domain D934_03545 PF00268 Ribonucleotide reductase, small chain D934_03560 PF01479 S4 domain D934_03560 PF00849 RNA pseudouridylate synthase D934_03565 PF13419 Haloacid dehalogenase-like hydrolase D934_03585 PF00830 Ribosomal L28 family D934_03590 PF00471 Ribosomal protein L33 D934_03595 PF13091 PLD-like domain D934_03595 PF13396 Phospholipase_D-nuclease N-terminal D934_03605 PF02798 Glutathione S-transferase, N-terminal domain D934_03605 PF00043 Glutathione S-transferase, C-terminal domain D934_03610 PF00056 lactate/malate dehydrogenase, NAD binding domain D934_03610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D934_03615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D934_03630 PF00529 HlyD membrane-fusion protein of T1SS D934_03630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D934_03645 PF00005 ABC transporter D934_03645 PF03412 Peptidase C39 family D934_03645 PF00664 ABC transporter transmembrane region D934_03655 PF01061 ABC-2 type transporter D934_03660 PF00005 ABC transporter D934_03665 PF05567 Neisseria PilC beta-propeller domain D934_03685 PF00270 DEAD/DEAH box helicase D934_03685 PF08482 ATP-dependent helicase C-terminal D934_03685 PF00271 Helicase conserved C-terminal domain D934_03685 PF04408 Helicase associated domain (HA2) D934_03695 PF13185 GAF domain D934_03700 PF17243 POTRA domain TamA domain 1 D934_03700 PF01103 Surface antigen D934_03705 PF04357 TamB, inner membrane protein subunit of TAM complex D934_03765 PF04303 PrpF protein D934_03790 PF07703 Alpha-2-macroglobulin bait region domain D934_03790 PF00207 Alpha-2-macroglobulin family D934_03790 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain D934_03790 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D934_03790 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D934_03790 PF01835 MG2 domain D934_03790 PF17962 Bacterial macroglobulin domain 6 D934_03790 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D934_03795 PF07859 alpha/beta hydrolase fold D934_03800 PF12852 Cupin D934_03800 PF12833 Helix-turn-helix domain D934_03815 PF00929 Exonuclease D934_03820 PF00924 Mechanosensitive ion channel D934_03820 PF05552 Conserved TM helix D934_03825 PF00391 PEP-utilising enzyme, mobile domain D934_03825 PF02896 PEP-utilising enzyme, TIM barrel domain D934_03825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D934_03830 PF03618 Kinase/pyrophosphorylase D934_03860 PF04055 Radical SAM superfamily D934_03860 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D934_03865 PF03099 Biotin/lipoate A/B protein ligase family D934_03870 PF04359 Protein of unknown function (DUF493) D934_03890 PF04286 Protein of unknown function (DUF445) D934_03895 PF00571 CBS domain D934_03895 PF03471 Transporter associated domain D934_03895 PF01595 Cyclin M transmembrane N-terminal domain D934_03915 PF00204 DNA gyrase B D934_03915 PF00986 DNA gyrase B subunit, carboxyl terminus D934_03915 PF01751 Toprim domain D934_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_03925 PF06418 CTP synthase N-terminus D934_03925 PF00117 Glutamine amidotransferase class-I D934_03930 PF00793 DAHP synthetase I family D934_03935 PF00113 Enolase, C-terminal TIM barrel domain D934_03935 PF03952 Enolase, N-terminal domain D934_03940 PF04977 Septum formation initiator D934_03945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D934_03950 PF02542 YgbB family D934_03955 PF01713 Smr domain D934_03985 PF02470 MlaD protein D934_03985 PF03886 ABC-type transport auxiliary lipoprotein component D934_03990 PF00005 ABC transporter D934_03995 PF02405 Permease MlaE D934_04025 PF04085 rod shape-determining protein MreC D934_04030 PF04093 rod shape-determining protein MreD D934_04035 PF00905 Penicillin binding protein transpeptidase domain D934_04035 PF03717 Penicillin-binding Protein dimerisation domain D934_04040 PF01098 Cell cycle protein D934_04045 PF02547 Queuosine biosynthesis protein D934_04050 PF02824 TGS domain D934_04050 PF04607 Region found in RelA / SpoT proteins D934_04050 PF13291 ACT domain D934_04065 PF03776 Septum formation topological specificity factor MinE D934_04070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D934_04075 PF05209 Septum formation inhibitor MinC, N-terminal domain D934_04075 PF03775 Septum formation inhibitor MinC, C-terminal domain D934_04105 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_04120 PF04264 YceI-like domain D934_04125 PF01627 Hpt domain D934_04125 PF00512 His Kinase A (phospho-acceptor) domain D934_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_04125 PF00672 HAMP domain D934_04125 PF17149 Periplasmic sensor domain found in signal transduction proteins D934_04125 PF00072 Response regulator receiver domain D934_04130 PF00145 C-5 cytosine-specific DNA methylase D934_04150 PF01208 Uroporphyrinogen decarboxylase (URO-D) D934_04160 PF01202 Shikimate kinase D934_04165 PF01243 Pyridoxamine 5'-phosphate oxidase D934_04165 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D934_04170 PF00749 tRNA synthetases class I (E and Q), catalytic domain D934_04170 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D934_04180 PF03932 CutC family D934_04200 PF00528 Binding-protein-dependent transport system inner membrane component D934_04205 PF00528 Binding-protein-dependent transport system inner membrane component D934_04210 PF12857 TOBE-like domain D934_04210 PF00005 ABC transporter D934_04225 PF04545 Sigma-70, region 4 D934_04225 PF04539 Sigma-70 region 3 D934_04225 PF04542 Sigma-70 region 2 D934_04225 PF03979 Sigma-70 factor, region 1.1 D934_04225 PF04546 Sigma-70, non-essential region D934_04225 PF00140 Sigma-70 factor, region 1.2 D934_04230 PF03989 DNA gyrase C-terminal domain, beta-propeller D934_04230 PF00521 DNA gyrase/topoisomerase IV, subunit A D934_04235 PF01047 MarR family D934_04245 PF12697 Alpha/beta hydrolase family D934_04250 PF00155 Aminotransferase class I and II D934_04260 PF01040 UbiA prenyltransferase family D934_04270 PF00753 Metallo-beta-lactamase superfamily D934_04275 PF12627 Probable RNA and SrmB- binding site of polymerase A D934_04275 PF01743 Poly A polymerase head domain D934_04275 PF01966 HD domain D934_04280 PF14718 Soluble lytic murein transglycosylase L domain D934_04280 PF01464 Transglycosylase SLT domain D934_04285 PF02666 Phosphatidylserine decarboxylase D934_04290 PF02630 SCO1/SenC D934_04295 PF05175 Methyltransferase small domain D934_04300 PF01264 Chorismate synthase D934_04310 PF01118 Semialdehyde dehydrogenase, NAD binding domain D934_04310 PF02774 Semialdehyde dehydrogenase, dimerisation domain D934_04320 PF01416 tRNA pseudouridine synthase D934_04325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D934_04335 PF00291 Pyridoxal-phosphate dependent enzyme D934_04340 PF00290 Tryptophan synthase alpha chain D934_04345 PF18073 Rubredoxin metal binding domain D934_04350 PF00296 Luciferase-like monooxygenase D934_04360 PF16124 RecQ zinc-binding D934_04360 PF00271 Helicase conserved C-terminal domain D934_04360 PF00270 DEAD/DEAH box helicase D934_04360 PF09382 RQC domain D934_04360 PF00570 HRDC domain D934_04365 PF00210 Ferritin-like domain D934_04370 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D934_04370 PF00271 Helicase conserved C-terminal domain D934_04370 PF04408 Helicase associated domain (HA2) D934_04370 PF11898 Domain of unknown function (DUF3418) D934_04370 PF00270 DEAD/DEAH box helicase D934_04375 PF02347 Glycine cleavage system P-protein D934_04490 PF00959 Phage lysozyme D934_04605 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D934_04610 PF00510 Cytochrome c oxidase subunit III D934_04615 PF00115 Cytochrome C and Quinol oxidase polypeptide I D934_04620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D934_04620 PF06481 COX Aromatic Rich Motif D934_04625 PF00348 Polyprenyl synthetase D934_04630 PF00436 Single-strand binding protein family D934_04650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D934_04660 PF00571 CBS domain D934_04660 PF01769 Divalent cation transporter D934_04660 PF03448 MgtE intracellular N domain D934_04670 PF00391 PEP-utilising enzyme, mobile domain D934_04670 PF02896 PEP-utilising enzyme, TIM barrel domain D934_04670 PF05524 PEP-utilising enzyme, N-terminal D934_04675 PF00381 PTS HPr component phosphorylation site D934_04685 PF03668 P-loop ATPase protein family D934_04690 PF07475 HPr Serine kinase C-terminal domain D934_04690 PF02603 HPr Serine kinase N terminus D934_04695 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D934_04700 PF04552 Sigma-54, DNA binding domain D934_04700 PF00309 Sigma-54 factor, Activator interacting domain (AID) D934_04700 PF04963 Sigma-54 factor, core binding domain D934_04705 PF00005 ABC transporter D934_04705 PF12399 Branched-chain amino acid ATP-binding cassette transporter D934_04725 PF00571 CBS domain D934_04725 PF01380 SIS domain D934_04730 PF01722 BolA-like protein D934_04735 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D934_04765 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D934_04765 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D934_04765 PF02769 AIR synthase related protein, C-terminal domain D934_04770 PF13098 Thioredoxin-like domain D934_04770 PF10411 Disulfide bond isomerase protein N-terminus D934_04775 PF02899 Phage integrase, N-terminal SAM-like domain D934_04775 PF00589 Phage integrase family D934_04780 PF00520 Ion transport protein D934_04780 PF00027 Cyclic nucleotide-binding domain D934_04785 PF00202 Aminotransferase class-III D934_04790 PF04107 Glutamate-cysteine ligase family 2(GCS2) D934_04795 PF01926 50S ribosome-binding GTPase D934_04815 PF01323 DSBA-like thioredoxin domain D934_04820 PF01323 DSBA-like thioredoxin domain D934_04830 PF04356 Protein of unknown function (DUF489) D934_04840 PF00293 NUDIX domain D934_04845 PF02617 ATP-dependent Clp protease adaptor protein ClpS D934_04855 PF17871 AAA lid domain D934_04855 PF02861 Clp amino terminal domain, pathogenicity island component D934_04855 PF07724 AAA domain (Cdc48 subfamily) D934_04855 PF10431 C-terminal, D2-small domain, of ClpB protein D934_04855 PF00004 ATPase family associated with various cellular activities (AAA) D934_04860 PF01176 Translation initiation factor 1A / IF-1 D934_04865 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D934_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_04880 PF09397 Ftsk gamma domain D934_04880 PF01580 FtsK/SpoIIIE family D934_04880 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D934_04880 PF17854 FtsK alpha domain D934_04890 PF03548 Outer membrane lipoprotein carrier protein LolA D934_04895 PF12002 MgsA AAA+ ATPase C terminal D934_04895 PF00004 ATPase family associated with various cellular activities (AAA) D934_04895 PF16193 AAA C-terminal domain D934_04900 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D934_04910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_04910 PF00512 His Kinase A (phospho-acceptor) domain D934_04915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D934_04935 PF02685 Glucokinase D934_04945 PF07690 Major Facilitator Superfamily D934_04950 PF00356 Bacterial regulatory proteins, lacI family D934_04955 PF01380 SIS domain D934_04960 PF01979 Amidohydrolase family D934_04965 PF17848 Acetyl-coA carboxylase zinc finger domain D934_04965 PF01039 Carboxyl transferase domain D934_04970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_04970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_04970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_04970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_04975 PF01522 Polysaccharide deacetylase D934_04980 PF13439 Glycosyltransferase Family 4 D934_04980 PF00534 Glycosyl transferases group 1 D934_04985 PF00355 Rieske [2Fe-2S] domain D934_04990 PF00266 Aminotransferase class-V D934_04995 PF01458 Uncharacterized protein family (UPF0051) D934_05000 PF00005 ABC transporter D934_05005 PF01458 Uncharacterized protein family (UPF0051) D934_05010 PF02082 Transcriptional regulator D934_05025 PF01678 Diaminopimelate epimerase D934_05035 PF02899 Phage integrase, N-terminal SAM-like domain D934_05035 PF00589 Phage integrase family D934_05040 PF00227 Proteasome subunit D934_05045 PF10431 C-terminal, D2-small domain, of ClpB protein D934_05045 PF07724 AAA domain (Cdc48 subfamily) D934_05045 PF00004 ATPase family associated with various cellular activities (AAA) D934_05090 PF17482 Phage tail sheath C-terminal domain D934_05090 PF04984 Phage tail sheath protein subtilisin-like domain D934_05125 PF01381 Helix-turn-helix D934_05195 PF00959 Phage lysozyme D934_05235 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT D934_05315 PF02498 BRO family, N-terminal domain D934_05315 PF10548 P22AR C-terminal domain D934_05360 PF04851 Type III restriction enzyme, res subunit D934_05360 PF17757 UvrB interaction domain D934_05360 PF00271 Helicase conserved C-terminal domain D934_05360 PF12344 Ultra-violet resistance protein B D934_05360 PF02151 UvrB/uvrC motif D934_05375 PF00701 Dihydrodipicolinate synthetase family D934_05385 PF00578 AhpC/TSA family D934_05390 PF02562 PhoH-like protein D934_05390 PF13638 PIN domain D934_05395 PF13638 PIN domain D934_05395 PF02562 PhoH-like protein D934_05400 PF13638 PIN domain D934_05400 PF02562 PhoH-like protein D934_05415 PF02769 AIR synthase related protein, C-terminal domain D934_05415 PF00586 AIR synthase related protein, N-terminal domain D934_05420 PF01029 NusB family D934_05425 PF00885 6,7-dimethyl-8-ribityllumazine synthase D934_05430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D934_05430 PF00925 GTP cyclohydrolase II D934_05435 PF00677 Lumazine binding domain D934_05440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D934_05440 PF01872 RibD C-terminal domain D934_05445 PF03477 ATP cone domain D934_05455 PF00464 Serine hydroxymethyltransferase D934_05460 PF00005 ABC transporter D934_05460 PF12848 ABC transporter D934_05465 PF06039 Malate:quinone oxidoreductase (Mqo) D934_05485 PF00849 RNA pseudouridylate synthase D934_05485 PF01479 S4 domain D934_05490 PF13525 Outer membrane lipoprotein D934_05500 PF02421 Ferrous iron transport protein B D934_05500 PF17910 FeoB cytosolic helical domain D934_05500 PF07664 Ferrous iron transport protein B C terminus D934_05500 PF04023 FeoA domain D934_05500 PF07670 Nucleoside recognition D934_05510 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase D934_05515 PF01029 NusB family D934_05515 PF01189 16S rRNA methyltransferase RsmB/F D934_05520 PF02911 Formyl transferase, C-terminal domain D934_05520 PF00551 Formyl transferase D934_05525 PF01327 Polypeptide deformylase D934_05535 PF02481 DNA recombination-mediator protein A D934_05535 PF17782 DprA winged helix domain D934_05540 PF04361 Protein of unknown function (DUF494) D934_05545 PF01131 DNA topoisomerase D934_05545 PF13368 Topoisomerase C-terminal repeat D934_05545 PF01751 Toprim domain D934_05550 PF01300 Telomere recombination D934_05585 PF04386 Stringent starvation protein B D934_05590 PF02798 Glutathione S-transferase, N-terminal domain D934_05590 PF00043 Glutathione S-transferase, C-terminal domain D934_05595 PF02167 Cytochrome C1 family D934_05600 PF00033 Cytochrome b/b6/petB D934_05600 PF00032 Cytochrome b(C-terminal)/b6/petD D934_05610 PF01464 Transglycosylase SLT domain D934_05615 PF01938 TRAM domain D934_05615 PF00919 Uncharacterized protein family UPF0004 D934_05615 PF04055 Radical SAM superfamily D934_05625 PF02562 PhoH-like protein D934_05630 PF02130 Uncharacterized protein family UPF0054 D934_05640 PF03471 Transporter associated domain D934_05640 PF00571 CBS domain D934_05650 PF01544 CorA-like Mg2+ transporter protein D934_05685 PF04829 Pre-toxin domain with VENN motif D934_05685 PF13332 Hemagglutinin repeat D934_05685 PF05860 haemagglutination activity domain D934_05785 PF01132 Elongation factor P (EF-P) OB domain D934_05785 PF09285 Elongation factor P, C-terminal D934_05785 PF08207 Elongation factor P (EF-P) KOW-like domain D934_05790 PF02913 FAD linked oxidases, C-terminal domain D934_05790 PF01565 FAD binding domain D934_05795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D934_05795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D934_05795 PF01842 ACT domain D934_05800 PF13520 Amino acid permease D934_05805 PF13520 Amino acid permease D934_05810 PF00596 Class II Aldolase and Adducin N-terminal domain D934_05815 PF03079 ARD/ARD' family D934_05825 PF01502 Phosphoribosyl-AMP cyclohydrolase D934_05825 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D934_05830 PF00977 Histidine biosynthesis protein D934_05835 PF00977 Histidine biosynthesis protein D934_05840 PF00117 Glutamine amidotransferase class-I D934_05845 PF00475 Imidazoleglycerol-phosphate dehydratase D934_05850 PF00155 Aminotransferase class I and II D934_05855 PF00815 Histidinol dehydrogenase D934_05860 PF08029 HisG, C-terminal domain D934_05860 PF01634 ATP phosphoribosyltransferase D934_05875 PF13393 Histidyl-tRNA synthetase D934_05875 PF03129 Anticodon binding domain D934_05880 PF00291 Pyridoxal-phosphate dependent enzyme D934_05880 PF14821 Threonine synthase N terminus D934_05885 PF08544 GHMP kinases C terminal D934_05885 PF00288 GHMP kinases N terminal domain D934_05890 PF03447 Homoserine dehydrogenase, NAD binding domain D934_05890 PF00696 Amino acid kinase family D934_05890 PF00742 Homoserine dehydrogenase D934_05890 PF01842 ACT domain D934_05890 PF13840 ACT domain D934_05895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D934_05895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D934_05900 PF03652 Holliday junction resolvase D934_05905 PF02622 Uncharacterized ACR, COG1678 D934_05910 PF07943 Penicillin-binding protein 5, C-terminal domain D934_05910 PF00768 D-alanyl-D-alanine carboxypeptidase D934_05920 PF00141 Peroxidase D934_05925 PF00226 DnaJ domain D934_05925 PF01556 DnaJ C terminal domain D934_05940 PF00905 Penicillin binding protein transpeptidase domain D934_05940 PF00912 Transglycosylase D934_05940 PF06832 Penicillin-Binding Protein C-terminus Family D934_05950 PF07715 TonB-dependent Receptor Plug Domain D934_05950 PF00593 TonB dependent receptor D934_05955 PF08281 Sigma-70, region 4 D934_05955 PF04542 Sigma-70 region 2 D934_05965 PF13180 PDZ domain D934_05970 PF06421 GTP-binding protein LepA C-terminus D934_05970 PF03144 Elongation factor Tu domain 2 D934_05970 PF00009 Elongation factor Tu GTP binding domain D934_05970 PF00679 Elongation factor G C-terminus D934_05975 PF10502 Signal peptidase, peptidase S26 D934_05985 PF00035 Double-stranded RNA binding motif D934_05985 PF14622 Ribonuclease-III-like D934_05990 PF07650 KH domain D934_05990 PF01926 50S ribosome-binding GTPase D934_06000 PF11967 Recombination protein O N terminal D934_06000 PF02565 Recombination protein O C terminal D934_06005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D934_06005 PF02780 Transketolase, C-terminal domain D934_06005 PF02779 Transketolase, pyrimidine binding domain D934_06015 PF00474 Sodium:solute symporter family D934_06025 PF13193 AMP-binding enzyme C-terminal domain D934_06025 PF16177 Acetyl-coenzyme A synthetase N-terminus D934_06025 PF00501 AMP-binding enzyme D934_06030 PF02659 Putative manganese efflux pump D934_06040 PF13360 PQQ-like domain D934_06045 PF00326 Prolyl oligopeptidase family D934_06045 PF07676 WD40-like Beta Propeller Repeat D934_06045 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region D934_06050 PF03169 OPT oligopeptide transporter protein D934_06065 PF01266 FAD dependent oxidoreductase D934_06065 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D934_06070 PF00230 Major intrinsic protein D934_06075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D934_06075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D934_06090 PF01263 Aldose 1-epimerase D934_06095 PF01717 Cobalamin-independent synthase, Catalytic domain D934_06095 PF08267 Cobalamin-independent synthase, N-terminal domain D934_06100 PF02677 Epoxyqueuosine reductase QueH D934_06105 PF00857 Isochorismatase family D934_06110 PF00501 AMP-binding enzyme D934_06120 PF00535 Glycosyl transferase family 2 D934_06125 PF01370 NAD dependent epimerase/dehydratase family D934_06130 PF17762 HTH domain found in ParB protein D934_06130 PF02195 ParB-like nuclease domain D934_06135 PF13614 AAA domain D934_06145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_06145 PF02403 Seryl-tRNA synthetase N-terminal domain D934_06150 PF03544 Gram-negative bacterial TonB protein C-terminal D934_06290 PF10548 P22AR C-terminal domain D934_06290 PF02498 BRO family, N-terminal domain D934_06305 PF00959 Phage lysozyme D934_06375 PF01381 Helix-turn-helix D934_06405 PF04984 Phage tail sheath protein subtilisin-like domain D934_06405 PF17482 Phage tail sheath C-terminal domain D934_06455 PF00436 Single-strand binding protein family D934_06485 PF10065 Uncharacterized conserved protein (DUF2303) D934_06550 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT D934_06570 PF10548 P22AR C-terminal domain D934_06570 PF02498 BRO family, N-terminal domain D934_06575 PF10548 P22AR C-terminal domain D934_06575 PF02498 BRO family, N-terminal domain D934_06590 PF00772 DnaB-like helicase N terminal domain D934_06590 PF03796 DnaB-like helicase C terminal domain D934_06605 PF00959 Phage lysozyme D934_06635 PF06381 Protein of unknown function (DUF1073) D934_06650 PF04233 Phage Mu protein F like protein D934_06705 PF10876 Phage tail assemb.y chaperone protein, TAC D934_06750 PF01381 Helix-turn-helix D934_06755 PF05973 Phage derived protein Gp49-like (DUF891) D934_06785 PF00005 ABC transporter D934_06790 PF00255 Glutathione peroxidase D934_06800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_06800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D934_06805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D934_06805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D934_06805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D934_06810 PF04102 SlyX D934_06820 PF07690 Major Facilitator Superfamily D934_06825 PF00294 pfkB family carbohydrate kinase D934_06835 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_06840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_06860 PF01209 ubiE/COQ5 methyltransferase family D934_06875 PF13632 Glycosyl transferase family group 2 D934_06880 PF02230 Phospholipase/Carboxylesterase D934_06885 PF07694 5TMR of 5TMR-LYT D934_06885 PF06580 Histidine kinase D934_06890 PF00072 Response regulator receiver domain D934_06890 PF04397 LytTr DNA-binding domain D934_06895 PF03900 Porphobilinogen deaminase, C-terminal domain D934_06895 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D934_06910 PF00437 Type II/IV secretion system protein D934_06915 PF00437 Type II/IV secretion system protein D934_06940 PF00535 Glycosyl transferase family 2 D934_06950 PF00109 Beta-ketoacyl synthase, N-terminal domain D934_06950 PF02801 Beta-ketoacyl synthase, C-terminal domain D934_06965 PF03706 Lysylphosphatidylglycerol synthase TM region D934_06965 PF09924 Uncharacterised conserved protein (DUF2156) D934_06970 PF00589 Phage integrase family D934_06970 PF02899 Phage integrase, N-terminal SAM-like domain D934_07005 PF10548 P22AR C-terminal domain D934_07005 PF02498 BRO family, N-terminal domain D934_07050 PF01381 Helix-turn-helix D934_07050 PF00717 Peptidase S24-like D934_07090 PF00959 Phage lysozyme D934_07185 PF01042 Endoribonuclease L-PSP D934_07200 PF01430 Hsp33 protein D934_07205 PF00912 Transglycosylase D934_07210 PF05188 MutS domain II D934_07210 PF05190 MutS family domain IV D934_07210 PF05192 MutS domain III D934_07210 PF00488 MutS domain V D934_07210 PF01624 MutS domain I D934_07215 PF01168 Alanine racemase, N-terminal domain D934_07230 PF07963 Prokaryotic N-terminal methylation motif D934_07270 PF03309 Type III pantothenate kinase D934_07275 PF02237 Biotin protein ligase C terminal domain D934_07275 PF08279 HTH domain D934_07275 PF03099 Biotin/lipoate A/B protein ligase family D934_07300 PF00581 Rhodanese-like domain D934_07305 PF02556 Preprotein translocase subunit SecB D934_07310 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D934_07310 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D934_07355 PF12169 DNA polymerase III subunits gamma and tau domain III D934_07355 PF12170 DNA polymerase III tau subunit V interacting with alpha D934_07360 PF02575 YbaB/EbfC DNA-binding family D934_07365 PF13662 Toprim domain D934_07365 PF02132 RecR protein D934_07370 PF01230 HIT domain D934_07380 PF11992 Domain of unknown function (DUF3488) D934_07380 PF13559 Domain of unknown function (DUF4129) D934_07380 PF01841 Transglutaminase-like superfamily D934_07390 PF17863 AAA lid domain D934_07390 PF07726 ATPase family associated with various cellular activities (AAA) D934_07405 PF02620 Large ribosomal RNA subunit accumulation protein YceD D934_07410 PF01783 Ribosomal L32p protein family D934_07415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D934_07415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D934_07420 PF00682 HMGL-like D934_07420 PF08502 LeuA allosteric (dimerisation) domain D934_07425 PF00291 Pyridoxal-phosphate dependent enzyme D934_07435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D934_07435 PF00205 Thiamine pyrophosphate enzyme, central domain D934_07435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D934_07440 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D934_07440 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D934_07445 PF11818 C-terminal domain of tail specific protease (DUF3340) D934_07445 PF03572 Peptidase family S41 D934_07445 PF00595 PDZ domain D934_07445 PF17804 Tail specific protease N-terminal domain D934_07450 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D934_07455 PF02566 OsmC-like protein D934_07460 PF03969 AFG1-like ATPase D934_07470 PF02492 CobW/HypB/UreG, nucleotide-binding domain D934_07470 PF07683 Cobalamin synthesis protein cobW C-terminal domain D934_07475 PF00551 Formyl transferase D934_07485 PF03109 ABC1 family D934_07495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D934_07495 PF12241 Trans-2-enoyl-CoA reductase catalytic region D934_07495 PF07055 Enoyl reductase FAD binding domain D934_07520 PF04264 YceI-like domain D934_07535 PF00543 Nitrogen regulatory protein P-II D934_07545 PF01526 Tn3 transposase DDE domain D934_07545 PF13700 Domain of unknown function (DUF4158) D934_07555 PF01526 Tn3 transposase DDE domain D934_07555 PF13700 Domain of unknown function (DUF4158) D934_07560 PF00072 Response regulator receiver domain D934_07560 PF00158 Sigma-54 interaction domain D934_07560 PF02954 Bacterial regulatory protein, Fis family D934_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_07565 PF00512 His Kinase A (phospho-acceptor) domain D934_07565 PF00989 PAS fold D934_07585 PF01797 Transposase IS200 like D934_07590 PF03797 Autotransporter beta-domain D934_07590 PF00082 Subtilase family D934_07590 PF12951 Passenger-associated-transport-repeat D934_07600 PF01385 Probable transposase D934_07600 PF07282 Putative transposase DNA-binding domain D934_07600 PF12323 Helix-turn-helix domain D934_07610 PF12951 Passenger-associated-transport-repeat D934_07610 PF03797 Autotransporter beta-domain D934_07610 PF00082 Subtilase family D934_07625 PF05683 Fumarase C-terminus D934_07625 PF05681 Fumarate hydratase (Fumerase) D934_07630 PF01336 OB-fold nucleic acid binding domain D934_07630 PF02938 GAD domain D934_07630 PF00152 tRNA synthetases class II (D, K and N) D934_07635 PF06508 Queuosine biosynthesis protein QueC D934_07655 PF00436 Single-strand binding protein family D934_07670 PF07963 Prokaryotic N-terminal methylation motif D934_07755 PF01807 CHC2 zinc finger D934_07755 PF08275 DNA primase catalytic core, N-terminal domain D934_07755 PF13662 Toprim domain D934_07755 PF08278 DNA primase DnaG DnaB-binding D934_07755 PF10410 DnaB-helicase binding domain of primase D934_07780 PF00574 Clp protease D934_07795 PF00959 Phage lysozyme D934_07845 PF09356 Phage conserved hypothetical protein BR0599 D934_07845 PF09931 Uncharacterized conserved protein (DUF2163) D934_07910 PF01381 Helix-turn-helix D934_07920 PF01207 Dihydrouridine synthase (Dus) D934_07930 PF00072 Response regulator receiver domain D934_07930 PF00486 Transcriptional regulatory protein, C terminal D934_07935 PF08918 PhoQ Sensor D934_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_07945 PF02772 S-adenosylmethionine synthetase, central domain D934_07945 PF00438 S-adenosylmethionine synthetase, N-terminal domain D934_07945 PF02773 S-adenosylmethionine synthetase, C-terminal domain D934_07960 PF00293 NUDIX domain D934_07970 PF00210 Ferritin-like domain D934_07980 PF00486 Transcriptional regulatory protein, C terminal D934_07980 PF00072 Response regulator receiver domain D934_07995 PF01521 Iron-sulphur cluster biosynthesis D934_08000 PF03741 Integral membrane protein TerC family D934_08005 PF10672 S-adenosylmethionine-dependent methyltransferase D934_08005 PF17785 PUA-like domain D934_08015 PF13520 Amino acid permease D934_08030 PF00005 ABC transporter D934_08035 PF02646 RmuC family D934_08045 PF04333 MlaA lipoprotein D934_08055 PF05494 MlaC protein D934_08065 PF02405 Permease MlaE D934_08070 PF00005 ABC transporter D934_08075 PF17946 RecC C-terminal domain D934_08080 PF13361 UvrD-like helicase C-terminal domain D934_08080 PF00580 UvrD/REP helicase N-terminal domain D934_08080 PF12705 PD-(D/E)XK nuclease superfamily D934_08090 PF13538 UvrD-like helicase C-terminal domain D934_08100 PF00579 tRNA synthetases class I (W and Y) D934_08115 PF01555 DNA methylase D934_08130 PF08278 DNA primase DnaG DnaB-binding D934_08130 PF08275 DNA primase catalytic core, N-terminal domain D934_08130 PF10410 DnaB-helicase binding domain of primase D934_08130 PF01807 CHC2 zinc finger D934_08135 PF03631 Virulence factor BrkB D934_08140 PF09424 Yqey-like protein D934_08150 PF01165 Ribosomal protein S21 D934_08155 PF00814 Glycoprotease family D934_08160 PF02152 Dihydroneopterin aldolase D934_08165 PF00924 Mechanosensitive ion channel D934_08170 PF14310 Fibronectin type III-like domain D934_08170 PF01915 Glycosyl hydrolase family 3 C-terminal domain D934_08170 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_08185 PF01066 CDP-alcohol phosphatidyltransferase D934_08195 PF03129 Anticodon binding domain D934_08195 PF04073 Aminoacyl-tRNA editing domain D934_08195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_08210 PF00072 Response regulator receiver domain D934_08215 PF00107 Zinc-binding dehydrogenase D934_08215 PF08240 Alcohol dehydrogenase GroES-like domain D934_08220 PF01145 SPFH domain / Band 7 family D934_08220 PF12221 Bacterial membrane protein N terminal D934_08225 PF01145 SPFH domain / Band 7 family D934_08235 PF00709 Adenylosuccinate synthetase D934_08240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D934_08240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D934_08245 PF00334 Nucleoside diphosphate kinase D934_08250 PF04055 Radical SAM superfamily D934_08270 PF01011 PQQ enzyme repeat D934_08270 PF13360 PQQ-like domain D934_08275 PF01926 50S ribosome-binding GTPase D934_08275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D934_08285 PF00899 ThiF family D934_08295 PF12792 CSS motif domain associated with EAL D934_08295 PF00563 EAL domain D934_08305 PF11892 Domain of unknown function (DUF3412) D934_08305 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D934_08305 PF03641 Possible lysine decarboxylase D934_08310 PF00114 Pilin (bacterial filament) D934_08310 PF07963 Prokaryotic N-terminal methylation motif D934_08330 PF05567 Neisseria PilC beta-propeller domain D934_08335 PF07963 Prokaryotic N-terminal methylation motif D934_08335 PF00114 Pilin (bacterial filament) D934_08355 PF00436 Single-strand binding protein family D934_08385 PF10065 Uncharacterized conserved protein (DUF2303) D934_08425 PF01381 Helix-turn-helix D934_08425 PF00717 Peptidase S24-like D934_08460 PF10548 P22AR C-terminal domain D934_08460 PF02498 BRO family, N-terminal domain D934_08475 PF03796 DnaB-like helicase C terminal domain D934_08475 PF00772 DnaB-like helicase N terminal domain D934_08495 PF00959 Phage lysozyme D934_08525 PF06381 Protein of unknown function (DUF1073) D934_08540 PF04233 Phage Mu protein F like protein D934_08595 PF10876 Phage tail assemb.y chaperone protein, TAC D934_08640 PF01381 Helix-turn-helix D934_08645 PF05973 Phage derived protein Gp49-like (DUF891) D934_08695 PF02590 Predicted SPOUT methyltransferase D934_08700 PF00593 TonB dependent receptor D934_08700 PF07715 TonB-dependent Receptor Plug Domain D934_08705 PF02600 Disulfide bond formation protein DsbB D934_08720 PF00691 OmpA family D934_08720 PF05736 OprF membrane domain D934_08725 PF01565 FAD binding domain D934_08725 PF02913 FAD linked oxidases, C-terminal domain D934_08730 PF13291 ACT domain D934_08730 PF04607 Region found in RelA / SpoT proteins D934_08730 PF02824 TGS domain D934_08735 PF01042 Endoribonuclease L-PSP D934_08740 PF17191 RecG wedge domain D934_08740 PF00271 Helicase conserved C-terminal domain D934_08740 PF00270 DEAD/DEAH box helicase D934_08745 PF00067 Cytochrome P450 D934_08760 PF00772 DnaB-like helicase N terminal domain D934_08760 PF03796 DnaB-like helicase C terminal domain D934_08770 PF00691 OmpA family D934_08770 PF05736 OprF membrane domain D934_08780 PF00294 pfkB family carbohydrate kinase D934_08785 PF00248 Aldo/keto reductase family D934_08790 PF00905 Penicillin binding protein transpeptidase domain D934_08790 PF00912 Transglycosylase D934_08790 PF17092 Penicillin-binding protein OB-like domain D934_08815 PF07660 Secretin and TonB N terminus short domain D934_08815 PF03958 Bacterial type II/III secretion system short domain D934_08815 PF11741 AMIN domain D934_08815 PF00263 Bacterial type II and III secretion system protein D934_08825 PF00884 Sulfatase D934_08825 PF08019 Phosphoethanolamine transferase EptA/EptB D934_08835 PF02581 Thiamine monophosphate synthase D934_08840 PF00301 Rubredoxin D934_08845 PF10431 C-terminal, D2-small domain, of ClpB protein D934_08845 PF07724 AAA domain (Cdc48 subfamily) D934_08845 PF17871 AAA lid domain D934_08845 PF02861 Clp amino terminal domain, pathogenicity island component D934_08845 PF00004 ATPase family associated with various cellular activities (AAA) D934_08860 PF00593 TonB dependent receptor D934_08860 PF07715 TonB-dependent Receptor Plug Domain D934_08875 PF00436 Single-strand binding protein family D934_08890 PF07963 Prokaryotic N-terminal methylation motif D934_08975 PF13662 Toprim domain D934_08975 PF08275 DNA primase catalytic core, N-terminal domain D934_08975 PF01807 CHC2 zinc finger D934_08975 PF10410 DnaB-helicase binding domain of primase D934_08975 PF08278 DNA primase DnaG DnaB-binding D934_09000 PF00574 Clp protease D934_09015 PF00959 Phage lysozyme D934_09065 PF09356 Phage conserved hypothetical protein BR0599 D934_09065 PF09931 Uncharacterized conserved protein (DUF2163) D934_09210 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D934_09390 PF00300 Histidine phosphatase superfamily (branch 1) D934_09395 PF10459 Peptidase S46 D934_09400 PF13667 ThiC-associated domain D934_09400 PF01964 Radical SAM ThiC family D934_09405 PF00175 Oxidoreductase NAD-binding domain D934_09405 PF00970 Oxidoreductase FAD-binding domain D934_09410 PF00255 Glutathione peroxidase D934_09415 PF00854 POT family D934_09420 PF04493 Endonuclease V D934_09425 PF00300 Histidine phosphatase superfamily (branch 1) D934_09430 PF04055 Radical SAM superfamily D934_09440 PF00691 OmpA family D934_09445 PF04052 TolB amino-terminal domain D934_09445 PF07676 WD40-like Beta Propeller Repeat D934_09455 PF02472 Biopolymer transport protein ExbD/TolR D934_09460 PF01618 MotA/TolQ/ExbB proton channel family D934_09465 PF03061 Thioesterase superfamily D934_09470 PF17864 RuvB AAA lid domain D934_09470 PF05491 RuvB C-terminal winged helix domain D934_09470 PF05496 Holliday junction DNA helicase RuvB P-loop domain D934_09475 PF02705 K+ potassium transporter D934_09480 PF01330 RuvA N terminal domain D934_09480 PF07499 RuvA, C-terminal domain D934_09485 PF02075 Crossover junction endodeoxyribonuclease RuvC D934_09490 PF01709 Transcriptional regulator D934_09495 PF04362 Bacterial Fe(2+) trafficking D934_09500 PF14815 NUDIX domain D934_09500 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_09500 PF00633 Helix-hairpin-helix motif D934_09505 PF02881 SRP54-type protein, helical bundle domain D934_09505 PF00448 SRP54-type protein, GTPase domain D934_09525 PF01026 TatD related DNase D934_09535 PF00425 chorismate binding enzyme D934_09535 PF04715 Anthranilate synthase component I, N terminal region D934_09540 PF00591 Glycosyl transferase family, a/b domain D934_09540 PF02885 Glycosyl transferase family, helical bundle domain D934_09540 PF00117 Glutamine amidotransferase class-I D934_09565 PF01371 Trp repressor protein D934_09570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D934_09570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D934_09575 PF02445 Quinolinate synthetase A protein D934_09580 PF00890 FAD binding domain D934_09580 PF02910 Fumarate reductase flavoprotein C-term D934_09585 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D934_09585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D934_09610 PF01526 Tn3 transposase DDE domain D934_09610 PF13700 Domain of unknown function (DUF4158) D934_09620 PF01526 Tn3 transposase DDE domain D934_09620 PF13700 Domain of unknown function (DUF4158) D934_09630 PF01648 4'-phosphopantetheinyl transferase superfamily D934_09635 PF02527 rRNA small subunit methyltransferase G D934_09645 PF00375 Sodium:dicarboxylate symporter family D934_09660 PF01625 Peptide methionine sulfoxide reductase D934_09680 PF01432 Peptidase family M3 D934_09690 PF02875 Mur ligase family, glutamate ligase domain D934_09690 PF08245 Mur ligase middle domain D934_09705 PF00156 Phosphoribosyl transferase domain D934_09720 PF01627 Hpt domain D934_09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_09720 PF01584 CheW-like domain D934_09720 PF00072 Response regulator receiver domain D934_09725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D934_09725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D934_09730 PF01584 CheW-like domain D934_09735 PF00072 Response regulator receiver domain D934_09740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D934_09740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D934_09755 PF02092 Glycyl-tRNA synthetase beta subunit D934_09755 PF05746 DALR anticodon binding domain D934_09760 PF02091 Glycyl-tRNA synthetase alpha subunit D934_09765 PF02540 NAD synthase D934_09765 PF00795 Carbon-nitrogen hydrolase D934_09780 PF03692 Putative zinc- or iron-chelating domain D934_09785 PF00561 alpha/beta hydrolase fold D934_09795 PF18273 Type III R-M EcoP15I C-terminal domain D934_09795 PF01555 DNA methylase D934_09805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D934_09805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D934_09815 PF00588 SpoU rRNA Methylase family D934_09825 PF02142 MGS-like domain D934_09825 PF01808 AICARFT/IMPCHase bienzyme D934_09830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D934_09830 PF02844 Phosphoribosylglycinamide synthetase, N domain D934_09830 PF02843 Phosphoribosylglycinamide synthetase, C domain D934_09840 PF12805 FUSC-like inner membrane protein yccS D934_09845 PF03186 CobD/Cbib protein D934_09850 PF03895 YadA-like membrane anchor domain D934_09850 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_09850 PF05658 Head domain of trimeric autotransporter adhesin D934_09855 PF01227 GTP cyclohydrolase I D934_09860 PF00132 Bacterial transferase hexapeptide (six repeats) D934_09865 PF00588 SpoU rRNA Methylase family D934_09865 PF08032 RNA 2'-O ribose methyltransferase substrate binding D934_09870 PF00575 S1 RNA binding domain D934_09870 PF17876 Cold shock domain D934_09870 PF08461 Ribonuclease R winged-helix domain D934_09870 PF08206 Ribonuclease B OB domain D934_09870 PF00773 RNB domain D934_09880 PF00578 AhpC/TSA family D934_09885 PF00925 GTP cyclohydrolase II D934_09900 PF00535 Glycosyl transferase family 2 D934_09910 PF01381 Helix-turn-helix D934_09920 PF02954 Bacterial regulatory protein, Fis family D934_09925 PF01063 Amino-transferase class IV D934_09960 PF00881 Nitroreductase family D934_09965 PF00293 NUDIX domain D934_09970 PF00557 Metallopeptidase family M24 D934_09970 PF05195 Aminopeptidase P, N-terminal domain D934_09975 PF03695 Uncharacterised protein family (UPF0149) D934_09985 PF05164 Cell division protein ZapA D934_09990 PF01812 5-formyltetrahydrofolate cyclo-ligase family D934_10000 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D934_10010 PF00999 Sodium/hydrogen exchanger family D934_10025 PF08411 Exonuclease C-terminal D934_10025 PF00929 Exonuclease D934_10040 PF08401 Domain of unknown function (DUF1738) D934_10040 PF13362 Toprim domain D934_10040 PF18818 Metallopeptidase superfamily domain D934_10070 PF00239 Resolvase, N terminal domain D934_10070 PF02796 Helix-turn-helix domain of resolvase D934_10090 PF00873 AcrB/AcrD/AcrF family D934_10100 PF00440 Bacterial regulatory proteins, tetR family D934_10105 PF01381 Helix-turn-helix D934_10110 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D934_10120 PF03743 Bacterial conjugation TrbI-like protein D934_10130 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D934_10150 PF00437 Type II/IV secretion system protein D934_10155 PF13362 Toprim domain D934_10155 PF08401 Domain of unknown function (DUF1738) D934_10155 PF18818 Metallopeptidase superfamily domain D934_10160 PF02796 Helix-turn-helix domain of resolvase D934_10160 PF00239 Resolvase, N terminal domain D934_10175 PF01513 ATP-NAD kinase D934_10180 PF05088 Bacterial NAD-glutamate dehydrogenase D934_10190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D934_10190 PF00529 HlyD membrane-fusion protein of T1SS D934_10200 PF00132 Bacterial transferase hexapeptide (six repeats) D934_10205 PF02649 Type I GTP cyclohydrolase folE2 D934_10210 PF13649 Methyltransferase domain D934_10240 PF01134 Glucose inhibited division protein A D934_10240 PF13932 GidA associated domain D934_10300 PF00206 Lyase D934_10300 PF10415 Fumarase C C-terminus D934_10305 PF00206 Lyase D934_10305 PF08328 Adenylosuccinate lyase C-terminal D934_10310 PF08007 Cupin superfamily protein D934_10315 PF00676 Dehydrogenase E1 component D934_10315 PF16078 2-oxoglutarate dehydrogenase N-terminus D934_10315 PF02779 Transketolase, pyrimidine binding domain D934_10315 PF16870 2-oxoglutarate dehydrogenase C-terminal D934_10320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D934_10320 PF00364 Biotin-requiring enzyme D934_10320 PF02817 e3 binding domain D934_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_10330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D934_10345 PF00899 ThiF family D934_10365 PF00325 Bacterial regulatory proteins, crp family D934_10365 PF00027 Cyclic nucleotide-binding domain D934_10370 PF02675 S-adenosylmethionine decarboxylase D934_10375 PF03232 Ubiquinone biosynthesis protein COQ7 D934_10380 PF00572 Ribosomal protein L13 D934_10385 PF00380 Ribosomal protein S9/S16 D934_10390 PF00285 Citrate synthase, C-terminal domain D934_10395 PF01197 Ribosomal protein L31 D934_10400 PF00814 Glycoprotease family D934_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_10405 PF03466 LysR substrate binding domain D934_10410 PF13192 Thioredoxin domain D934_10410 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_10415 PF00578 AhpC/TSA family D934_10415 PF10417 C-terminal domain of 1-Cys peroxiredoxin D934_10420 PF13018 Extended Signal Peptide of Type V secretion system D934_10420 PF03895 YadA-like membrane anchor domain D934_10420 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_10420 PF05658 Head domain of trimeric autotransporter adhesin D934_10430 PF00263 Bacterial type II and III secretion system protein D934_10430 PF03958 Bacterial type II/III secretion system short domain D934_10440 PF10741 Type II secretion system (T2SS), protein M subtype b D934_10445 PF05137 Fimbrial assembly protein (PilN) D934_10450 PF03934 Type II secretion system (T2SS), protein K D934_10460 PF07963 Prokaryotic N-terminal methylation motif D934_10465 PF12019 Type II transport protein GspH D934_10470 PF08334 Type II secretion system (T2SS), protein G D934_10485 PF00482 Type II secretion system (T2SS), protein F D934_10490 PF00437 Type II/IV secretion system protein D934_10490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D934_10495 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_10495 PF03895 YadA-like membrane anchor domain D934_10495 PF05658 Head domain of trimeric autotransporter adhesin D934_10495 PF13018 Extended Signal Peptide of Type V secretion system D934_10515 PF17827 PrmC N-terminal domain D934_10515 PF05175 Methyltransferase small domain D934_10520 PF00561 alpha/beta hydrolase fold D934_10535 PF04055 Radical SAM superfamily D934_10535 PF06969 HemN C-terminal domain D934_10540 PF01725 Ham1 family D934_10545 PF03725 3' exoribonuclease family, domain 2 D934_10545 PF01138 3' exoribonuclease family, domain 1 D934_10550 PF03755 YicC-like family, N-terminal region D934_10550 PF08340 Domain of unknown function (DUF1732) D934_10555 PF00625 Guanylate kinase D934_10560 PF01192 RNA polymerase Rpb6 D934_10565 PF00009 Elongation factor Tu GTP binding domain D934_10570 PF01507 Phosphoadenosine phosphosulfate reductase family D934_10575 PF00175 Oxidoreductase NAD-binding domain D934_10575 PF00667 FAD binding domain D934_10575 PF00258 Flavodoxin D934_10580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D934_10580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D934_10585 PF01507 Phosphoadenosine phosphosulfate reductase family D934_10610 PF13369 Transglutaminase-like superfamily D934_10630 PF11838 ERAP1-like C-terminal domain D934_10630 PF01433 Peptidase family M1 domain D934_10635 PF01209 ubiE/COQ5 methyltransferase family D934_10660 PF01555 DNA methylase D934_10670 PF08459 UvrC Helix-hairpin-helix N-terminal D934_10670 PF01541 GIY-YIG catalytic domain D934_10670 PF02151 UvrB/uvrC motif D934_10675 PF01066 CDP-alcohol phosphatidyltransferase D934_10695 PF00490 Delta-aminolevulinic acid dehydratase D934_10705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D934_10715 PF13610 DDE domain D934_10725 PF00202 Aminotransferase class-III D934_10735 PF02348 Cytidylyltransferase D934_10740 PF01451 Low molecular weight phosphotyrosine protein phosphatase D934_10790 PF00239 Resolvase, N terminal domain D934_10790 PF02796 Helix-turn-helix domain of resolvase D934_10795 PF08386 TAP-like protein D934_10795 PF00561 alpha/beta hydrolase fold D934_10815 PF02796 Helix-turn-helix domain of resolvase D934_10815 PF00239 Resolvase, N terminal domain D934_10835 PF14850 DNA-binding domain of Proline dehydrogenase D934_10835 PF00171 Aldehyde dehydrogenase family D934_10835 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D934_10835 PF01619 Proline dehydrogenase D934_10875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D934_10880 PF00800 Prephenate dehydratase D934_10880 PF01842 ACT domain D934_10880 PF01817 Chorismate mutase type II D934_10885 PF00266 Aminotransferase class-V D934_10895 PF12679 ABC-2 family transporter protein D934_10900 PF00005 ABC transporter D934_10910 PF00186 Dihydrofolate reductase D934_10915 PF00303 Thymidylate synthase D934_10920 PF01790 Prolipoprotein diacylglyceryl transferase D934_10925 PF01219 Prokaryotic diacylglycerol kinase D934_10930 PF00072 Response regulator receiver domain D934_10930 PF00486 Transcriptional regulatory protein, C terminal D934_10935 PF01817 Chorismate mutase type II D934_10935 PF02153 Prephenate dehydrogenase D934_10940 PF01556 DnaJ C terminal domain D934_10940 PF00226 DnaJ domain D934_10940 PF00684 DnaJ central domain D934_10945 PF00012 Hsp70 protein D934_10950 PF01025 GrpE D934_10955 PF01628 HrcA protein C terminal domain D934_10955 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D934_10960 PF02463 RecF/RecN/SMC N terminal domain D934_10960 PF13476 AAA domain D934_10965 PF01475 Ferric uptake regulator family D934_10970 PF04355 SmpA / OmlA family D934_10975 PF03658 RnfH family Ubiquitin D934_10985 PF01668 SmpB protein D934_10995 PF00313 'Cold-shock' DNA-binding domain D934_11000 PF01048 Phosphorylase superfamily D934_11010 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_11020 PF05958 tRNA (Uracil-5-)-methyltransferase D934_11025 PF00072 Response regulator receiver domain D934_11025 PF00486 Transcriptional regulatory protein, C terminal D934_11030 PF03808 Glycosyl transferase WecB/TagA/CpsF family D934_11040 PF14667 Polysaccharide biosynthesis C-terminal domain D934_11050 PF13439 Glycosyltransferase Family 4 D934_11050 PF00534 Glycosyl transferases group 1 D934_11065 PF02397 Bacterial sugar transferase D934_11080 PF00180 Isocitrate/isopropylmalate dehydrogenase D934_11085 PF00694 Aconitase C-terminal domain D934_11090 PF00330 Aconitase family (aconitate hydratase) D934_11105 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D934_11105 PF14489 QueF-like protein D934_11110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D934_11115 PF00873 AcrB/AcrD/AcrF family D934_11120 PF00873 AcrB/AcrD/AcrF family D934_11130 PF00107 Zinc-binding dehydrogenase D934_11130 PF08240 Alcohol dehydrogenase GroES-like domain D934_11155 PF00462 Glutaredoxin D934_11160 PF01522 Polysaccharide deacetylase D934_11165 PF00155 Aminotransferase class I and II D934_11170 PF03412 Peptidase C39 family D934_11170 PF00664 ABC transporter transmembrane region D934_11170 PF00005 ABC transporter D934_11205 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D934_11205 PF06594 Haemolysin-type calcium binding protein related domain D934_11220 PF13087 AAA domain D934_11220 PF13091 PLD-like domain D934_11255 PF02401 LytB protein D934_11260 PF01252 Signal peptidase (SPase) II D934_11265 PF08264 Anticodon-binding domain of tRNA D934_11265 PF06827 Zinc finger found in FPG and IleRS D934_11265 PF00133 tRNA synthetases class I (I, L, M and V) D934_11270 PF01687 Riboflavin kinase D934_11270 PF06574 FAD synthetase D934_11275 PF03023 Lipid II flippase MurJ D934_11280 PF01649 Ribosomal protein S20 D934_11285 PF01926 50S ribosome-binding GTPase D934_11285 PF01018 GTP1/OBG D934_11290 PF01016 Ribosomal L27 protein D934_11295 PF00829 Ribosomal prokaryotic L21 protein D934_11300 PF17755 UvrA DNA-binding domain D934_11300 PF00005 ABC transporter D934_11300 PF17760 UvrA interaction domain D934_11320 PF00117 Glutamine amidotransferase class-I D934_11320 PF02540 NAD synthase D934_11320 PF00958 GMP synthase C terminal domain D934_11325 PF00571 CBS domain D934_11325 PF00478 IMP dehydrogenase / GMP reductase domain D934_11330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D934_11330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D934_11335 PF00483 Nucleotidyl transferase D934_11340 PF02719 Polysaccharide biosynthesis protein D934_11345 PF00953 Glycosyl transferase family 4 D934_11350 PF18073 Rubredoxin metal binding domain D934_11360 PF00216 Bacterial DNA-binding protein D934_11365 PF00575 S1 RNA binding domain D934_11370 PF02224 Cytidylate kinase D934_11375 PF00444 Ribosomal protein L36 D934_11385 PF04371 Porphyromonas-type peptidyl-arginine deiminase D934_11390 PF00795 Carbon-nitrogen hydrolase D934_11405 PF00528 Binding-protein-dependent transport system inner membrane component D934_11410 PF00528 Binding-protein-dependent transport system inner membrane component D934_11430 PF02616 Segregation and condensation protein ScpA D934_11435 PF04079 Segregation and condensation complex subunit ScpB D934_11440 PF01479 S4 domain D934_11440 PF00849 RNA pseudouridylate synthase D934_11450 PF00795 Carbon-nitrogen hydrolase D934_11455 PF00155 Aminotransferase class I and II D934_11460 PF00005 ABC transporter D934_11465 PF03379 CcmB protein D934_11470 PF01578 Cytochrome C assembly protein D934_11480 PF03100 CcmE D934_11485 PF01578 Cytochrome C assembly protein D934_11485 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D934_11490 PF08534 Redoxin D934_11495 PF03918 Cytochrome C biogenesis protein D934_11510 PF00561 alpha/beta hydrolase fold D934_11515 PF00295 Glycosyl hydrolases family 28 D934_11525 PF13419 Haloacid dehalogenase-like hydrolase D934_11535 PF01979 Amidohydrolase family D934_11540 PF08207 Elongation factor P (EF-P) KOW-like domain D934_11540 PF09285 Elongation factor P, C-terminal D934_11540 PF01132 Elongation factor P (EF-P) OB domain D934_11545 PF04055 Radical SAM superfamily D934_11550 PF00588 SpoU rRNA Methylase family D934_11555 PF00459 Inositol monophosphatase family D934_11580 PF09115 DNA polymerase III, delta subunit, C terminal D934_11585 PF02618 YceG-like family D934_11590 PF04715 Anthranilate synthase component I, N terminal region D934_11590 PF00425 chorismate binding enzyme D934_11595 PF00109 Beta-ketoacyl synthase, N-terminal domain D934_11595 PF02801 Beta-ketoacyl synthase, C-terminal domain D934_11600 PF00550 Phosphopantetheine attachment site D934_11610 PF00698 Acyl transferase domain D934_11615 PF00456 Transketolase, thiamine diphosphate binding domain D934_11615 PF17831 Pyruvate dehydrogenase E1 component middle domain D934_11625 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D934_11625 PF06594 Haemolysin-type calcium binding protein related domain D934_11655 PF00348 Polyprenyl synthetase D934_11660 PF02609 Exonuclease VII small subunit D934_11665 PF11734 TilS substrate C-terminal domain D934_11665 PF01171 PP-loop family D934_11665 PF09179 TilS substrate binding domain D934_11675 PF00245 Alkaline phosphatase D934_11680 PF00375 Sodium:dicarboxylate symporter family D934_11690 PF00877 NlpC/P60 family D934_11695 PF00877 NlpC/P60 family D934_11700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_11705 PF04235 Protein of unknown function (DUF418) D934_11725 PF10576 Iron-sulfur binding domain of endonuclease III D934_11725 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_11725 PF00633 Helix-hairpin-helix motif D934_11735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_11735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D934_11770 PF01488 Shikimate / quinate 5-dehydrogenase D934_11770 PF08501 Shikimate dehydrogenase substrate binding domain D934_11770 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D934_11785 PF02581 Thiamine monophosphate synthase D934_11785 PF08543 Phosphomethylpyrimidine kinase D934_11790 PF11412 Disulphide bond corrector protein DsbC D934_11790 PF02683 Cytochrome C biogenesis protein transmembrane region D934_11795 PF03091 CutA1 divalent ion tolerance protein D934_11800 PF00166 Chaperonin 10 Kd subunit D934_11805 PF00118 TCP-1/cpn60 chaperonin family D934_11835 PF01370 NAD dependent epimerase/dehydratase family D934_11840 PF16363 GDP-mannose 4,6 dehydratase D934_11855 PF00291 Pyridoxal-phosphate dependent enzyme D934_11875 PF00593 TonB dependent receptor D934_11875 PF07715 TonB-dependent Receptor Plug Domain D934_11880 PF18331 PKHD-type hydroxylase C-terminal domain D934_11880 PF13640 2OG-Fe(II) oxygenase superfamily D934_11900 PF02424 ApbE family D934_11920 PF01636 Phosphotransferase enzyme family D934_11925 PF00483 Nucleotidyl transferase D934_11930 PF00308 Bacterial dnaA protein D934_11935 PF01594 AI-2E family transporter D934_11945 PF02769 AIR synthase related protein, C-terminal domain D934_11945 PF00586 AIR synthase related protein, N-terminal domain D934_11950 PF00551 Formyl transferase D934_11970 PF02223 Thymidylate kinase D934_11980 PF05649 Peptidase family M13 D934_11980 PF01431 Peptidase family M13 D934_11985 PF07977 FabA-like domain D934_11995 PF01171 PP-loop family D934_12000 PF04381 Putative exonuclease, RdgC D934_12010 PF00762 Ferrochelatase D934_12020 PF02416 mttA/Hcf106 family D934_12030 PF00902 Sec-independent protein translocase protein (TatC) D934_12045 PF00117 Glutamine amidotransferase class-I D934_12045 PF00958 GMP synthase C terminal domain D934_12060 PF00127 Copper binding proteins, plastocyanin/azurin family D934_12065 PF03193 RsgA GTPase D934_12075 PF02021 Uncharacterised protein family UPF0102 D934_12080 PF04348 LppC putative lipoprotein D934_12085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D934_12090 PF00593 TonB dependent receptor D934_12090 PF07715 TonB-dependent Receptor Plug Domain D934_12095 PF09334 tRNA synthetases class I (M) D934_12095 PF01588 Putative tRNA binding domain D934_12100 PF04060 Putative Fe-S cluster D934_12165 PF01807 CHC2 zinc finger D934_12165 PF10410 DnaB-helicase binding domain of primase D934_12165 PF08278 DNA primase DnaG DnaB-binding D934_12165 PF13662 Toprim domain D934_12165 PF08275 DNA primase catalytic core, N-terminal domain D934_12185 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT D934_12250 PF07963 Prokaryotic N-terminal methylation motif D934_12265 PF00436 Single-strand binding protein family D934_12320 PF05973 Phage derived protein Gp49-like (DUF891) D934_12325 PF01381 Helix-turn-helix D934_12375 PF05973 Phage derived protein Gp49-like (DUF891) D934_12380 PF01381 Helix-turn-helix D934_12390 PF10876 Phage tail assemb.y chaperone protein, TAC D934_12405 PF01385 Probable transposase D934_12405 PF12323 Helix-turn-helix domain D934_12405 PF07282 Putative transposase DNA-binding domain D934_12455 PF02899 Phage integrase, N-terminal SAM-like domain D934_12455 PF00589 Phage integrase family D934_12460 PF00005 ABC transporter D934_12460 PF12848 ABC transporter D934_12465 PF07715 TonB-dependent Receptor Plug Domain D934_12465 PF00593 TonB dependent receptor D934_12475 PF01323 DSBA-like thioredoxin domain D934_12480 PF00593 TonB dependent receptor D934_12480 PF07715 TonB-dependent Receptor Plug Domain D934_12485 PF02254 TrkA-N domain D934_12485 PF00999 Sodium/hydrogen exchanger family D934_12490 PF12849 PBP superfamily domain D934_12495 PF00528 Binding-protein-dependent transport system inner membrane component D934_12500 PF00528 Binding-protein-dependent transport system inner membrane component D934_12505 PF00005 ABC transporter D934_12515 PF00929 Exonuclease D934_12520 PF00398 Ribosomal RNA adenine dimethylase D934_12525 PF04379 ApaG domain D934_12530 PF00149 Calcineurin-like phosphoesterase D934_12545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D934_12565 PF00929 Exonuclease D934_12570 PF00075 RNase H D934_12580 PF16123 Hydroxyacylglutathione hydrolase C-terminus D934_12580 PF00753 Metallo-beta-lactamase superfamily D934_12585 PF00575 S1 RNA binding domain D934_12585 PF09371 Tex-like protein N-terminal domain D934_12585 PF16921 Tex protein YqgF-like domain D934_12585 PF17674 HHH domain D934_12600 PF00719 Inorganic pyrophosphatase D934_12610 PF00085 Thioredoxin D934_12620 PF13603 Leucyl-tRNA synthetase, Domain 2 D934_12620 PF08264 Anticodon-binding domain of tRNA D934_12620 PF00133 tRNA synthetases class I (I, L, M and V) D934_12635 PF01467 Cytidylyltransferase-like D934_12655 PF13406 Transglycosylase SLT domain D934_12660 PF05036 Sporulation related domain D934_12660 PF03330 Lytic transglycolase D934_12725 PF13332 Hemagglutinin repeat D934_12725 PF05860 haemagglutination activity domain D934_12725 PF04829 Pre-toxin domain with VENN motif D934_12795 PF04829 Pre-toxin domain with VENN motif D934_12795 PF05860 haemagglutination activity domain D934_12795 PF13332 Hemagglutinin repeat D934_12795 PF13018 Extended Signal Peptide of Type V secretion system D934_12820 PF14814 Bifunctional transglycosylase second domain D934_12820 PF00912 Transglycosylase D934_12820 PF00905 Penicillin binding protein transpeptidase domain D934_12830 PF13307 Helicase C-terminal domain D934_12830 PF04851 Type III restriction enzyme, res subunit D934_12845 PF00484 Carbonic anhydrase D934_12855 PF01522 Polysaccharide deacetylase D934_12860 PF09383 NIL domain D934_12860 PF00005 ABC transporter D934_12865 PF00528 Binding-protein-dependent transport system inner membrane component D934_12870 PF03180 NLPA lipoprotein D934_12880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D934_12880 PF02817 e3 binding domain D934_12880 PF00364 Biotin-requiring enzyme D934_12885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D934_12885 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_12895 PF01545 Cation efflux family D934_12900 PF01053 Cys/Met metabolism PLP-dependent enzyme D934_12905 PF00561 alpha/beta hydrolase fold D934_12910 PF01551 Peptidase family M23 D934_12920 PF01975 Survival protein SurE D934_12930 PF09335 SNARE associated Golgi protein D934_12935 PF01476 LysM domain D934_12935 PF01551 Peptidase family M23 D934_12950 PF00512 His Kinase A (phospho-acceptor) domain D934_12950 PF16736 Single Cache-like D934_12950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_12950 PF00989 PAS fold D934_12960 PF01168 Alanine racemase, N-terminal domain D934_12960 PF00842 Alanine racemase, C-terminal domain D934_12965 PF01266 FAD dependent oxidoreductase D934_12970 PF01641 SelR domain D934_12975 PF00704 Glycosyl hydrolases family 18 D934_12975 PF01476 LysM domain D934_12980 PF02838 Glycosyl hydrolase family 20, domain 2 D934_12980 PF07691 PA14 domain D934_12980 PF00728 Glycosyl hydrolase family 20, catalytic domain D934_12990 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_12990 PF01915 Glycosyl hydrolase family 3 C-terminal domain D934_12990 PF07691 PA14 domain D934_12990 PF14310 Fibronectin type III-like domain D934_13005 PF17678 Glycosyl hydrolase family 92 N-terminal domain D934_13005 PF07971 Glycosyl hydrolase family 92 D934_13010 PF01301 Glycosyl hydrolases family 35 D934_13015 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D934_13020 PF09312 SurA N-terminal domain D934_13020 PF00639 PPIC-type PPIASE domain D934_13025 PF03968 OstA-like protein D934_13025 PF04453 LPS transport system D D934_13030 PF01494 FAD binding domain D934_13035 PF01494 FAD binding domain D934_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_13040 PF03466 LysR substrate binding domain D934_13045 PF10414 Sirohaem synthase dimerisation region D934_13045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D934_13045 PF14824 Sirohaem biosynthesis protein central D934_13050 PF00291 Pyridoxal-phosphate dependent enzyme D934_13070 PF00274 Fructose-bisphosphate aldolase class-I D934_13075 PF00224 Pyruvate kinase, barrel domain D934_13075 PF02887 Pyruvate kinase, alpha/beta domain D934_13080 PF00162 Phosphoglycerate kinase D934_13085 PF00749 tRNA synthetases class I (E and Q), catalytic domain D934_13090 PF01475 Ferric uptake regulator family D934_13100 PF00553 Cellulose binding domain D934_13100 PF00150 Cellulase (glycosyl hydrolase family 5) D934_13110 PF00675 Insulinase (Peptidase family M16) D934_13110 PF05193 Peptidase M16 inactive domain D934_13125 PF03330 Lytic transglycolase D934_13130 PF02810 SEC-C motif D934_13130 PF01043 SecA preprotein cross-linking domain D934_13130 PF07517 SecA DEAD-like domain D934_13130 PF07516 SecA Wing and Scaffold domain D934_13135 PF01476 LysM domain D934_13135 PF08525 Opacity-associated protein A N-terminal motif D934_13135 PF01551 Peptidase family M23 D934_13145 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D934_13150 PF12327 FtsZ family, C-terminal domain D934_13150 PF00091 Tubulin/FtsZ family, GTPase domain D934_13155 PF02491 SHS2 domain inserted in FTSA D934_13160 PF08478 POTRA domain, FtsQ-type D934_13160 PF03799 Cell division protein FtsQ D934_13165 PF07478 D-ala D-ala ligase C-terminus D934_13165 PF01820 D-ala D-ala ligase N-terminus D934_13170 PF01225 Mur ligase family, catalytic domain D934_13170 PF02875 Mur ligase family, glutamate ligase domain D934_13170 PF08245 Mur ligase middle domain D934_13175 PF04101 Glycosyltransferase family 28 C-terminal domain D934_13175 PF03033 Glycosyltransferase family 28 N-terminal domain D934_13180 PF01098 Cell cycle protein D934_13185 PF00953 Glycosyl transferase family 4 D934_13190 PF08245 Mur ligase middle domain D934_13190 PF01225 Mur ligase family, catalytic domain D934_13190 PF02875 Mur ligase family, glutamate ligase domain D934_13195 PF08245 Mur ligase middle domain D934_13195 PF02875 Mur ligase family, glutamate ligase domain D934_13195 PF01225 Mur ligase family, catalytic domain D934_13200 PF03717 Penicillin-binding Protein dimerisation domain D934_13200 PF00905 Penicillin binding protein transpeptidase domain D934_13205 PF04999 Cell division protein FtsL D934_13210 PF01795 MraW methylase family D934_13215 PF02381 MraZ protein, putative antitoxin-like D934_13220 PF03600 Citrate transporter D934_13220 PF02080 TrkA-C domain D934_13225 PF02390 Putative methyltransferase D934_13230 PF05690 Thiazole biosynthesis protein ThiG D934_13235 PF05690 Thiazole biosynthesis protein ThiG D934_13235 PF02597 ThiS family D934_13270 PF07977 FabA-like domain D934_13295 PF00753 Metallo-beta-lactamase superfamily D934_13295 PF04273 Putative phosphatase (DUF442) D934_13305 PF04143 Sulphur transport D934_13315 PF01925 Sulfite exporter TauE/SafE D934_13320 PF00692 dUTPase D934_13330 PF08676 MutL C terminal dimerisation domain D934_13330 PF01119 DNA mismatch repair protein, C-terminal domain D934_13335 PF11741 AMIN domain D934_13335 PF01520 N-acetylmuramoyl-L-alanine amidase D934_13340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D934_13345 PF03853 YjeF-related protein N-terminus D934_13345 PF01256 Carbohydrate kinase D934_13350 PF13742 OB-fold nucleic acid binding domain D934_13350 PF02601 Exonuclease VII, large subunit D934_13365 PF00570 HRDC domain D934_13365 PF01612 3'-5' exonuclease D934_13375 PF01728 FtsJ-like methyltransferase D934_13375 PF18125 RlmM ferredoxin-like domain D934_13395 PF00216 Bacterial DNA-binding protein D934_13400 PF03147 Ferredoxin-fold anticodon binding domain D934_13400 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D934_13400 PF03484 tRNA synthetase B5 domain D934_13400 PF01588 Putative tRNA binding domain D934_13400 PF03483 B3/4 domain D934_13405 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D934_13405 PF01409 tRNA synthetases class II core domain (F) D934_13410 PF00453 Ribosomal protein L20 D934_13415 PF01632 Ribosomal protein L35 D934_13420 PF05198 Translation initiation factor IF-3, N-terminal domain D934_13420 PF00707 Translation initiation factor IF-3, C-terminal domain D934_13425 PF02824 TGS domain D934_13425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D934_13425 PF03129 Anticodon binding domain D934_13425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_13440 PF18030 RimK PreATP-grasp domain D934_13440 PF08443 RimK-like ATP-grasp domain D934_13445 PF00072 Response regulator receiver domain D934_13445 PF00486 Transcriptional regulatory protein, C terminal D934_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13450 PF00672 HAMP domain D934_13450 PF00512 His Kinase A (phospho-acceptor) domain D934_13455 PF01121 Dephospho-CoA kinase D934_13460 PF06750 Bacterial Peptidase A24 N-terminal domain D934_13460 PF01478 Type IV leader peptidase family D934_13465 PF00482 Type II secretion system (T2SS), protein F D934_13470 PF07963 Prokaryotic N-terminal methylation motif D934_13470 PF00114 Pilin (bacterial filament) D934_13485 PF07963 Prokaryotic N-terminal methylation motif D934_13485 PF00114 Pilin (bacterial filament) D934_13490 PF00437 Type II/IV secretion system protein D934_13490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D934_13495 PF02954 Bacterial regulatory protein, Fis family D934_13495 PF00072 Response regulator receiver domain D934_13495 PF00158 Sigma-54 interaction domain D934_13500 PF00512 His Kinase A (phospho-acceptor) domain D934_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13505 PF08442 ATP-grasp domain D934_13505 PF00549 CoA-ligase D934_13510 PF00549 CoA-ligase D934_13510 PF02629 CoA binding domain D934_13520 PF17287 POTRA domain D934_13520 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D934_13520 PF08479 POTRA domain, ShlB-type D934_13535 PF00521 DNA gyrase/topoisomerase IV, subunit A D934_13535 PF03989 DNA gyrase C-terminal domain, beta-propeller D934_13540 PF01008 Initiation factor 2 subunit family D934_13550 PF00152 tRNA synthetases class II (D, K and N) D934_13560 PF12826 Helix-hairpin-helix motif D934_13560 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D934_13560 PF03120 NAD-dependent DNA ligase OB-fold domain D934_13560 PF01653 NAD-dependent DNA ligase adenylation domain D934_13560 PF00533 BRCA1 C Terminus (BRCT) domain D934_13570 PF04354 ZipA, C-terminal FtsZ-binding domain D934_13575 PF02463 RecF/RecN/SMC N terminal domain D934_13580 PF01281 Ribosomal protein L9, N-terminal domain D934_13580 PF03948 Ribosomal protein L9, C-terminal domain D934_13585 PF01084 Ribosomal protein S18 D934_13590 PF01250 Ribosomal protein S6 D934_13595 PF01521 Iron-sulphur cluster biosynthesis D934_13600 PF00152 tRNA synthetases class II (D, K and N) D934_13600 PF01336 OB-fold nucleic acid binding domain D934_13605 PF01061 ABC-2 type transporter D934_13610 PF00005 ABC transporter D934_13625 PF01180 Dihydroorotate dehydrogenase D934_13630 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D934_13630 PF01565 FAD binding domain D934_13635 PF00892 EamA-like transporter family D934_13640 PF01569 PAP2 superfamily D934_13645 PF04551 GcpE protein D934_13655 PF00072 Response regulator receiver domain D934_13660 PF00889 Elongation factor TS D934_13665 PF00318 Ribosomal protein S2 D934_13675 PF00664 ABC transporter transmembrane region D934_13675 PF00005 ABC transporter D934_13740 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D934_13750 PF12323 Helix-turn-helix domain D934_13750 PF01385 Probable transposase D934_13750 PF07282 Putative transposase DNA-binding domain D934_13755 PF04221 RelB antitoxin D934_13790 PF12323 Helix-turn-helix domain D934_13790 PF01385 Probable transposase D934_13790 PF07282 Putative transposase DNA-binding domain D934_13795 PF01797 Transposase IS200 like D934_13810 PF02796 Helix-turn-helix domain of resolvase D934_13810 PF00239 Resolvase, N terminal domain D934_13825 PF02796 Helix-turn-helix domain of resolvase D934_13825 PF00239 Resolvase, N terminal domain D934_13835 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_13895 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D934_13910 PF04335 VirB8 protein D934_13920 PF03743 Bacterial conjugation TrbI-like protein D934_13925 PF00437 Type II/IV secretion system protein