D934_00005 PF02321 Outer membrane efflux protein D934_00010 PF12850 Calcineurin-like phosphoesterase superfamily domain D934_00020 PF02541 Ppx/GppA phosphatase family D934_00025 PF02503 Polyphosphate kinase middle domain D934_00025 PF13089 Polyphosphate kinase N-terminal domain D934_00025 PF13090 Polyphosphate kinase C-terminal domain D934_00030 PF00512 His Kinase A (phospho-acceptor) domain D934_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_00030 PF11808 D934_00030 D934_00035 PF00072 Response regulator receiver domain D934_00035 PF00486 Transcriptional regulatory protein, C terminal D934_00040 PF01435 Peptidase family M48 D934_00045 PF00462 Glutaredoxin D934_00050 PF00180 Isocitrate/isopropylmalate dehydrogenase D934_00055 PF13211 D934_00055 D934_00060 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D934_00060 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D934_00065 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase D934_00070 PF00037 4Fe-4S binding domain D934_00070 PF11953 Domain of unknown function (DUF3470) D934_00080 PF01106 NifU-like domain D934_00085 PF01329 Pterin 4 alpha carbinolamine dehydratase D934_00090 PF03544 Gram-negative bacterial TonB protein C-terminal D934_00095 PF00849 RNA pseudouridylate synthase D934_00095 PF01479 S4 domain D934_00100 PF00575 S1 RNA binding domain D934_00100 PF10150 Ribonuclease E/G family D934_00105 PF00072 Response regulator receiver domain D934_00105 PF00196 Bacterial regulatory proteins, luxR family D934_00115 PF00072 Response regulator receiver domain D934_00120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D934_00120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D934_00125 PF00545 ribonuclease D934_00130 PF01337 Barstar (barnase inhibitor) D934_00135 PF00005 ABC transporter D934_00135 PF12848 ABC transporter D934_00135 PF16326 D934_00135 D934_00145 PF02696 D934_00145 D934_00150 PF00313 'Cold-shock' DNA-binding domain D934_00155 PF00563 EAL domain D934_00155 PF00990 GGDEF domain D934_00155 PF13426 PAS domain D934_00160 PF01435 Peptidase family M48 D934_00165 PF00009 Elongation factor Tu GTP binding domain D934_00165 PF03143 Elongation factor Tu C-terminal domain D934_00165 PF03144 Elongation factor Tu domain 2 D934_00170 PF00009 Elongation factor Tu GTP binding domain D934_00170 PF00679 Elongation factor G C-terminus D934_00170 PF03144 Elongation factor Tu domain 2 D934_00170 PF03764 Elongation factor G, domain IV D934_00170 PF14492 Elongation Factor G, domain II D934_00175 PF00177 Ribosomal protein S7p/S5e D934_00180 PF00164 Ribosomal protein S12/S23 D934_00185 PF00623 RNA polymerase Rpb1, domain 2 D934_00185 PF04983 RNA polymerase Rpb1, domain 3 D934_00185 PF04997 RNA polymerase Rpb1, domain 1 D934_00185 PF04998 RNA polymerase Rpb1, domain 5 D934_00185 PF05000 RNA polymerase Rpb1, domain 4 D934_00190 PF00562 RNA polymerase Rpb2, domain 6 D934_00190 PF04560 RNA polymerase Rpb2, domain 7 D934_00190 PF04561 RNA polymerase Rpb2, domain 2 D934_00190 PF04563 RNA polymerase beta subunit D934_00190 PF04565 RNA polymerase Rpb2, domain 3 D934_00190 PF10385 RNA polymerase beta subunit external 1 domain D934_00195 PF00542 Ribosomal protein L7/L12 C-terminal domain D934_00195 PF16320 D934_00195 D934_00200 PF00466 Ribosomal protein L10 D934_00205 PF00687 Ribosomal protein L1p/L10e family D934_00210 PF00298 Ribosomal protein L11, RNA binding domain D934_00210 PF03946 Ribosomal protein L11, N-terminal domain D934_00215 PF00467 KOW motif D934_00215 PF02357 Transcription termination factor nusG D934_00220 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D934_00230 PF00009 Elongation factor Tu GTP binding domain D934_00230 PF03143 Elongation factor Tu C-terminal domain D934_00230 PF03144 Elongation factor Tu domain 2 D934_00255 PF01926 50S ribosome-binding GTPase D934_00255 PF06071 Protein of unknown function (DUF933) D934_00260 PF01195 Peptidyl-tRNA hydrolase D934_00265 PF01386 Ribosomal L25p family D934_00265 PF14693 Ribosomal protein TL5, C-terminal domain D934_00270 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D934_00270 PF14572 Phosphoribosyl synthetase-associated domain D934_00280 PF00288 GHMP kinases N terminal domain D934_00280 PF08544 GHMP kinases C terminal D934_00285 PF03550 Outer membrane lipoprotein LolB D934_00295 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D934_00295 PF01488 Shikimate / quinate 5-dehydrogenase D934_00295 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D934_00300 PF00472 RF-1 domain D934_00300 PF03462 PCRF domain D934_00315 PF05728 Uncharacterised protein family (UPF0227) D934_00320 PF01510 N-acetylmuramoyl-L-alanine amidase D934_00345 PF13538 UvrD-like helicase C-terminal domain D934_00360 PF01914 D934_00360 D934_00365 PF00462 Glutaredoxin D934_00370 PF02222 ATP-grasp domain D934_00375 PF00731 AIR carboxylase D934_00380 PF03966 Trm112p-like protein D934_00395 PF07731 Multicopper oxidase D934_00395 PF07732 Multicopper oxidase D934_00400 PF06057 Bacterial virulence protein (VirJ) D934_00405 PF00580 UvrD/REP helicase N-terminal domain D934_00405 PF13361 UvrD-like helicase C-terminal domain D934_00410 PF04349 Periplasmic glucan biosynthesis protein, MdoG D934_00415 PF01343 Peptidase family S49 D934_00420 PF01554 MatE D934_00425 PF11304 D934_00425 D934_00435 PF00270 DEAD/DEAH box helicase D934_00435 PF00271 Helicase conserved C-terminal domain D934_00440 PF04542 Sigma-70 region 2 D934_00440 PF04545 Sigma-70, region 4 D934_00445 PF03167 Uracil DNA glycosylase superfamily D934_00450 PF00072 Response regulator receiver domain D934_00460 PF00005 ABC transporter D934_00465 PF00270 DEAD/DEAH box helicase D934_00465 PF00271 Helicase conserved C-terminal domain D934_00465 PF12300 D934_00465 D934_00470 PF00085 Thioredoxin D934_00475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_00475 PF07497 Rho termination factor, RNA-binding domain D934_00475 PF07498 Rho termination factor, N-terminal domain D934_00480 PF03971 Monomeric isocitrate dehydrogenase D934_00485 PF03572 Peptidase family S41 D934_00485 PF13180 PDZ domain D934_00490 PF01551 Peptidase family M23 D934_00495 PF02225 PA domain D934_00495 PF04389 Peptidase family M28 D934_00505 PF00150 Cellulase (glycosyl hydrolase family 5) D934_00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_00515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D934_00520 PF00310 Glutamine amidotransferases class-II D934_00520 PF01493 GXGXG motif D934_00520 PF01645 Conserved region in glutamate synthase D934_00520 PF04898 Glutamate synthase central domain D934_00525 PF03807 NADP oxidoreductase coenzyme F420-dependent D934_00525 PF14748 Pyrroline-5-carboxylate reductase dimerisation D934_00530 PF00593 TonB dependent receptor D934_00530 PF07715 TonB-dependent Receptor Plug Domain D934_00535 PF01120 Alpha-L-fucosidase D934_00535 PF16757 D934_00535 D934_00570 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D934_00570 PF04851 Type III restriction enzyme, res subunit D934_00575 PF01420 Type I restriction modification DNA specificity domain D934_00580 PF01420 Type I restriction modification DNA specificity domain D934_00585 PF02384 N-6 DNA Methylase D934_00585 PF12161 HsdM N-terminal domain D934_00590 PF07510 D934_00590 D934_00600 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D934_00600 PF04851 Type III restriction enzyme, res subunit D934_00600 PF12008 Type I restriction and modification enzyme - subunit R C terminal D934_00605 PF01420 Type I restriction modification DNA specificity domain D934_00620 PF02384 N-6 DNA Methylase D934_00620 PF12161 HsdM N-terminal domain D934_00625 PF01810 D934_00625 D934_00640 PF11855 D934_00640 D934_00645 PF13835 D934_00645 D934_00650 PF13555 P-loop containing region of AAA domain D934_00650 PF13558 Putative exonuclease SbcCD, C subunit D934_00655 PF09983 D934_00655 D934_00655 PF11795 D934_00655 D934_00670 PF05590 D934_00670 D934_00745 PF00353 Hemolysin-type calcium-binding repeat (2 copies) D934_00745 PF06594 D934_00745 D934_00750 PF12811 D934_00750 D934_00780 PF05016 Plasmid stabilisation system protein D934_00795 PF04591 Protein of unknown function, DUF596 D934_00805 PF04591 Protein of unknown function, DUF596 D934_00810 PF05590 D934_00810 D934_00810 PF13332 D934_00810 D934_00890 PF01926 50S ribosome-binding GTPase D934_00890 PF10396 GTP-binding protein TrmE N-terminus D934_00890 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE D934_00895 PF00656 Caspase domain D934_00895 PF01522 Polysaccharide deacetylase D934_00900 PF02096 60Kd inner membrane protein D934_00900 PF14849 YidC periplasmic domain D934_00910 PF00468 Ribosomal protein L34 D934_00915 PF00308 Bacterial dnaA protein D934_00915 PF08299 Bacterial dnaA protein helix-turn-helix D934_00915 PF11638 DnaA N-terminal domain D934_00920 PF00712 DNA polymerase III beta subunit, N-terminal domain D934_00920 PF02767 DNA polymerase III beta subunit, central domain D934_00920 PF02768 DNA polymerase III beta subunit, C-terminal domain D934_00925 PF02463 RecF/RecN/SMC N terminal domain D934_00935 PF00204 DNA gyrase B D934_00935 PF00986 DNA gyrase B subunit, carboxyl terminus D934_00935 PF01751 Toprim domain D934_00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_00940 PF02517 CAAX protease self-immunity D934_00945 PF01435 Peptidase family M48 D934_00950 PF13181 Tetratricopeptide repeat D934_00950 PF13432 Tetratricopeptide repeat D934_00955 PF03544 Gram-negative bacterial TonB protein C-terminal D934_00960 PF01618 D934_00960 D934_00965 PF02472 Biopolymer transport protein ExbD/TolR D934_00970 PF02472 Biopolymer transport protein ExbD/TolR D934_00975 PF00326 Prolyl oligopeptidase family D934_00975 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region D934_00985 PF01218 Coproporphyrinogen III oxidase D934_01010 PF00793 DAHP synthetase I family D934_01020 PF07963 Prokaryotic N-terminal methylation motif D934_01020 PF12019 Type II transport protein GspH D934_01025 PF07963 Prokaryotic N-terminal methylation motif D934_01030 PF16074 D934_01030 D934_01035 PF13681 D934_01035 D934_01035 PF14341 D934_01035 D934_01040 PF05567 Neisseria PilC beta-propeller domain D934_01045 PF07963 Prokaryotic N-terminal methylation motif D934_01045 PF16732 D934_01045 D934_01050 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D934_01055 PF00155 Aminotransferase class I and II D934_01065 PF01741 Large-conductance mechanosensitive channel, MscL D934_01075 PF07399 D934_01075 D934_01080 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ D934_01085 PF13302 Acetyltransferase (GNAT) domain D934_01090 PF00270 DEAD/DEAH box helicase D934_01090 PF00271 Helicase conserved C-terminal domain D934_01090 PF02559 CarD-like/TRCF domain D934_01090 PF03461 TRCF domain D934_01100 PF01220 Dehydroquinase class II D934_01105 PF00364 Biotin-requiring enzyme D934_01110 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain D934_01110 PF02785 Biotin carboxylase C-terminal domain D934_01110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D934_01115 PF00580 UvrD/REP helicase N-terminal domain D934_01115 PF13361 UvrD-like helicase C-terminal domain D934_01125 PF00042 Globin D934_01125 PF00175 Oxidoreductase NAD-binding domain D934_01125 PF00970 Oxidoreductase FAD-binding domain D934_01135 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ D934_01140 PF02195 ParB-like nuclease domain D934_01140 PF08535 KorB domain D934_01160 PF04055 Radical SAM superfamily D934_01160 PF06968 Biotin and Thiamin Synthesis associated domain D934_01165 PF01734 Patatin-like phospholipase D934_01170 PF01040 UbiA prenyltransferase family D934_01215 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D934_01215 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D934_01220 PF01578 D934_01220 D934_01225 PF00448 SRP54-type protein, GTPase domain D934_01225 PF02881 SRP54-type protein, helical bundle domain D934_01225 PF02978 Signal peptide binding domain D934_01235 PF01063 Aminotransferase class IV D934_01240 PF00419 Fimbrial protein D934_01245 PF00419 Fimbrial protein D934_01250 PF00577 Outer membrane usher protein D934_01250 PF13953 PapC C-terminal domain D934_01250 PF13954 PapC N-terminal domain D934_01255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain D934_01255 PF02753 Pili assembly chaperone PapD, C-terminal domain D934_01260 PF16970 D934_01260 D934_01270 PF02464 Competence-damaged protein D934_01275 PF00083 Sugar (and other) transporter D934_01280 PF01926 50S ribosome-binding GTPase D934_01280 PF13167 D934_01280 D934_01280 PF16360 D934_01280 D934_01285 PF17209 D934_01285 D934_01290 PF01715 IPP transferase D934_01295 PF00809 Pterin binding enzyme D934_01305 PF00004 ATPase family associated with various cellular activities (AAA) D934_01305 PF01434 Peptidase family M41 D934_01305 PF06480 FtsH Extracellular D934_01310 PF01728 FtsJ-like methyltransferase D934_01315 PF01985 CRS1 / YhbY (CRM) domain D934_01320 PF04430 Protein of unknown function (DUF498/DUF598) D934_01325 PF00920 Dehydratase family D934_01330 PF10276 Zinc-finger domain D934_01335 PF00534 Glycosyl transferases group 1 D934_01335 PF13439 Glycosyltransferase Family 4 D934_01340 PF04932 D934_01340 D934_01345 PF03279 D934_01345 D934_01350 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D934_01355 PF00754 F5/8 type C domain D934_01355 PF01120 Alpha-L-fucosidase D934_01360 PF00886 Ribosomal protein S16 D934_01365 PF01782 RimM N-terminal domain D934_01365 PF05239 PRC-barrel domain D934_01370 PF01746 tRNA (Guanine-1)-methyltransferase D934_01375 PF01245 Ribosomal protein L19 D934_01380 PF00557 Metallopeptidase family M24 D934_01390 PF00132 Bacterial transferase hexapeptide (six repeats) D934_01390 PF14602 Hexapeptide repeat of succinyl-transferase D934_01390 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D934_01395 PF03960 ArsC family D934_01400 PF01546 Peptidase family M20/M25/M40 D934_01400 PF07687 Peptidase dimerisation domain D934_01410 PF00733 Asparagine synthase D934_01410 PF13537 Glutamine amidotransferase domain D934_01415 PF13229 Right handed beta helix region D934_01420 PF03060 Nitronate monooxygenase D934_01430 PF00717 Peptidase S24-like D934_01430 PF01726 LexA DNA binding domain D934_01435 PF00154 recA bacterial DNA recombination protein D934_01440 PF01411 tRNA synthetases class II (A) D934_01440 PF02272 DHHA1 domain D934_01440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D934_01445 PF02599 Global regulator protein family D934_01455 PF01432 Peptidase family M3 D934_01460 PF00291 Pyridoxal-phosphate dependent enzyme D934_01470 PF00394 Multicopper oxidase D934_01470 PF07731 Multicopper oxidase D934_01470 PF07732 Multicopper oxidase D934_01475 PF05275 D934_01475 D934_01485 PF00133 tRNA synthetases class I (I, L, M and V) D934_01485 PF08264 Anticodon-binding domain of tRNA D934_01485 PF10458 Valyl tRNA synthetase tRNA binding arm D934_01495 PF04364 DNA polymerase III chi subunit, HolC D934_01505 PF00883 Cytosol aminopeptidase family, catalytic domain D934_01505 PF02789 Cytosol aminopeptidase family, N-terminal domain D934_01510 PF03739 D934_01510 D934_01515 PF03739 D934_01515 D934_01530 PF01380 SIS domain D934_01530 PF13522 Glutamine amidotransferase domain D934_01535 PF01757 D934_01535 D934_01540 PF01564 Spermine/spermidine synthase D934_01540 PF17284 D934_01540 D934_01545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D934_01555 PF05036 Sporulation related domain D934_01560 PF00750 tRNA synthetases class I (R) D934_01560 PF03485 Arginyl tRNA synthetase N terminal domain D934_01560 PF05746 DALR anticodon binding domain D934_01565 PF04002 RadC-like JAB domain D934_01570 PF02441 Flavoprotein D934_01570 PF04127 DNA / pantothenate metabolism flavoprotein D934_01575 PF00692 dUTPase D934_01580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_01580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_01580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_01580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_01590 PF00156 Phosphoribosyl transferase domain D934_01600 PF11692 D934_01600 D934_01605 PF00112 Papain family cysteine protease D934_01630 PF03372 Endonuclease/Exonuclease/phosphatase family D934_01635 PF13000 D934_01635 D934_01640 PF03702 Uncharacterised protein family (UPF0075) D934_01645 PF01551 Peptidase family M23 D934_01645 PF04225 Opacity-associated protein A LysM-like domain D934_01650 PF00579 tRNA synthetases class I (W and Y) D934_01680 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D934_01680 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D934_01685 PF01578 D934_01685 D934_01690 PF05960 Bacterial protein of unknown function (DUF885) D934_01695 PF13561 Enoyl-(Acyl carrier protein) reductase D934_01700 PF00009 Elongation factor Tu GTP binding domain D934_01700 PF16658 D934_01700 D934_01705 PF03006 D934_01705 D934_01710 PF00535 Glycosyl transferase family 2 D934_01715 PF01026 TatD related DNase D934_01720 PF05433 D934_01720 D934_01735 PF01597 Glycine cleavage H-protein D934_01745 PF01571 Aminomethyltransferase folate-binding domain D934_01745 PF08669 Glycine cleavage T-protein C-terminal barrel domain D934_01750 PF01957 NfeD-like C-terminal, partner-binding D934_01755 PF01145 SPFH domain / Band 7 family D934_01755 PF16200 D934_01755 D934_01760 PF03819 MazG nucleotide pyrophosphohydrolase domain D934_01765 PF00459 Inositol monophosphatase family D934_01770 PF00293 NUDIX domain D934_01775 PF00202 Aminotransferase class-III D934_01780 PF04452 RNA methyltransferase D934_01785 PF00270 DEAD/DEAH box helicase D934_01785 PF00271 Helicase conserved C-terminal domain D934_01790 PF01242 6-pyruvoyl tetrahydropterin synthase D934_01800 PF01553 Acyltransferase D934_01810 PF04367 D934_01810 D934_01815 PF13489 Methyltransferase domain D934_01820 PF03653 D934_01820 D934_01825 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D934_01830 PF01336 OB-fold nucleic acid binding domain D934_01830 PF02811 PHP domain D934_01830 PF07733 Bacterial DNA polymerase III alpha subunit D934_01830 PF14579 Helix-hairpin-helix motif D934_01835 PF01259 SAICAR synthetase D934_01840 PF00226 DnaJ domain D934_01845 PF00834 Ribulose-phosphate 3 epimerase family D934_01850 PF00425 chorismate binding enzyme D934_01850 PF04715 Anthranilate synthase component I, N terminal region D934_01855 PF00117 Glutamine amidotransferase class-I D934_01860 PF00591 Glycosyl transferase family, a/b domain D934_01860 PF02885 Glycosyl transferase family, helical bundle domain D934_01865 PF00218 Indole-3-glycerol phosphate synthase D934_01870 PF12710 haloacid dehalogenase-like hydrolase D934_01875 PF01047 MarR family D934_01885 PF00557 Metallopeptidase family M24 D934_01885 PF01321 Creatinase/Prolidase N-terminal domain D934_01895 PF05960 Bacterial protein of unknown function (DUF885) D934_01900 PF01702 Queuine tRNA-ribosyltransferase D934_01905 PF02699 Preprotein translocase subunit D934_01910 PF02355 Protein export membrane protein D934_01910 PF07549 SecD/SecF GG Motif D934_01910 PF13721 SecD export protein N-terminal TM region D934_01915 PF02355 Protein export membrane protein D934_01915 PF07549 SecD/SecF GG Motif D934_01925 PF01743 Poly A polymerase head domain D934_01925 PF12626 Polymerase A arginine-rich C-terminus D934_01925 PF12627 Probable RNA and SrmB- binding site of polymerase A D934_01930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D934_01935 PF02548 Ketopantoate hydroxymethyltransferase D934_01940 PF02569 Pantoate-beta-alanine ligase D934_01945 PF02261 Aspartate decarboxylase D934_01950 PF00342 Phosphoglucose isomerase D934_01960 PF02576 Uncharacterised BCR, YhbC family COG0779 D934_01960 PF17384 D934_01960 D934_01965 PF00575 S1 RNA binding domain D934_01965 PF08529 NusA N-terminal domain D934_01965 PF13184 NusA-like KH domain D934_01965 PF14520 Helix-hairpin-helix domain D934_01970 PF00009 Elongation factor Tu GTP binding domain D934_01970 PF04760 Translation initiation factor IF-2, N-terminal region D934_01970 PF08364 D934_01970 D934_01970 PF11987 Translation-initiation factor 2 D934_01975 PF02033 Ribosome-binding factor A D934_01980 PF01509 TruB family pseudouridylate synthase (N terminal domain) D934_01980 PF09157 Pseudouridine synthase II TruB, C-terminal D934_01980 PF16198 D934_01980 D934_01985 PF00312 Ribosomal protein S15 D934_01990 PF00013 KH domain D934_01990 PF00575 S1 RNA binding domain D934_01990 PF01138 3' exoribonuclease family, domain 1 D934_01990 PF03725 3' exoribonuclease family, domain 2 D934_01990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D934_01995 PF01638 HxlR-like helix-turn-helix D934_02005 PF00873 AcrB/AcrD/AcrF family D934_02010 PF13437 HlyD family secretion protein D934_02010 PF13533 Biotin-lipoyl like D934_02030 PF00892 EamA-like transporter family D934_02035 PF00270 DEAD/DEAH box helicase D934_02035 PF00271 Helicase conserved C-terminal domain D934_02035 PF03880 DbpA RNA binding domain D934_02045 PF00766 Electron transfer flavoprotein FAD-binding domain D934_02045 PF01012 Electron transfer flavoprotein domain D934_02050 PF01012 Electron transfer flavoprotein domain D934_02055 PF16363 D934_02055 D934_02060 PF00483 Nucleotidyl transferase D934_02065 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D934_02070 PF04321 RmlD substrate binding domain D934_02075 PF00483 Nucleotidyl transferase D934_02075 PF01050 Mannose-6-phosphate isomerase D934_02080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_02080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_02080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_02080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_02105 PF00082 Subtilase family D934_02105 PF03797 Autotransporter beta-domain D934_02105 PF12951 D934_02105 D934_02115 PF06779 D934_02115 D934_02120 PF07273 Protein of unknown function (DUF1439) D934_02130 PF00365 Phosphofructokinase D934_02135 PF00406 Adenylate kinase D934_02140 PF01225 Mur ligase family, catalytic domain D934_02140 PF02875 Mur ligase family, glutamate ligase domain D934_02140 PF08245 Mur ligase middle domain D934_02145 PF01569 PAP2 superfamily D934_02145 PF09335 D934_02145 D934_02145 PF14067 D934_02145 D934_02150 PF01636 Phosphotransferase enzyme family D934_02160 PF00883 Cytosol aminopeptidase family, catalytic domain D934_02165 PF01594 D934_02165 D934_02185 PF13180 PDZ domain D934_02185 PF13365 Trypsin-like peptidase domain D934_02190 PF01370 NAD dependent epimerase/dehydratase family D934_02190 PF08338 Domain of unknown function (DUF1731) D934_02195 PF00501 AMP-binding enzyme D934_02195 PF13193 AMP-binding enzyme C-terminal domain D934_02205 PF00330 Aconitase family (aconitate hydratase) D934_02205 PF00694 Aconitase C-terminal domain D934_02210 PF04014 Antidote-toxin recognition MazE D934_02215 PF01850 PIN domain D934_02220 PF00330 Aconitase family (aconitate hydratase) D934_02220 PF06434 Aconitate hydratase 2 N-terminus D934_02220 PF11791 Aconitate B N-terminal domain D934_02230 PF01863 Protein of unknown function DUF45 D934_02250 PF02384 N-6 DNA Methylase D934_02255 PF02384 N-6 DNA Methylase D934_02260 PF01381 Helix-turn-helix D934_02260 PF02384 N-6 DNA Methylase D934_02260 PF12161 HsdM N-terminal domain D934_02270 PF13533 Biotin-lipoyl like D934_02285 PF00121 Triosephosphate isomerase D934_02290 PF03840 Preprotein translocase SecG subunit D934_02300 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D934_02305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D934_02310 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D934_02315 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D934_02320 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin D934_02325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D934_02325 PF10531 SLBB domain D934_02325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D934_02330 PF00384 Molybdopterin oxidoreductase D934_02330 PF01568 Molydopterin dinucleotide binding domain D934_02330 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D934_02330 PF13510 2Fe-2S iron-sulfur cluster binding domain D934_02335 PF00146 NADH dehydrogenase D934_02340 PF12838 4Fe-4S dicluster domain D934_02345 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D934_02350 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D934_02355 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains D934_02355 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D934_02360 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains D934_02365 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains D934_02370 PF13561 Enoyl-(Acyl carrier protein) reductase D934_02375 PF03600 Citrate transporter D934_02380 PF07396 Phosphate-selective porin O and P D934_02385 PF00072 Response regulator receiver domain D934_02385 PF00486 Transcriptional regulatory protein, C terminal D934_02390 PF00512 His Kinase A (phospho-acceptor) domain D934_02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02390 PF08521 D934_02390 D934_02395 PF13531 Bacterial extracellular solute-binding protein D934_02405 PF00072 Response regulator receiver domain D934_02405 PF00196 Bacterial regulatory proteins, luxR family D934_02410 PF00072 Response regulator receiver domain D934_02410 PF00512 His Kinase A (phospho-acceptor) domain D934_02410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02410 PF12860 D934_02410 D934_02415 PF07396 Phosphate-selective porin O and P D934_02420 PF00375 Sodium:dicarboxylate symporter family D934_02425 PF00390 Malic enzyme, N-terminal domain D934_02425 PF01515 Phosphate acetyl/butaryl transferase D934_02425 PF03949 Malic enzyme, NAD binding domain D934_02430 PF00183 Hsp90 protein D934_02430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_02435 PF03602 Conserved hypothetical protein 95 D934_02440 PF01467 Cytidylyltransferase D934_02450 PF00037 4Fe-4S binding domain D934_02455 PF01019 Gamma-glutamyltranspeptidase D934_02465 PF00990 GGDEF domain D934_02465 PF07695 D934_02465 D934_02465 PF07696 7TMR-DISM extracellular 2 D934_02470 PF01551 Peptidase family M23 D934_02475 PF01979 Amidohydrolase family D934_02480 PF01809 D934_02480 D934_02485 PF01258 Prokaryotic dksA/traR C4-type zinc finger D934_02490 PF12146 Putative lysophospholipase D934_02495 PF05977 Transmembrane secretion effector D934_02500 PF02657 Fe-S metabolism associated domain D934_02505 PF01406 tRNA synthetases class I (C) catalytic domain D934_02505 PF09190 DALR domain D934_02520 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D934_02520 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D934_02525 PF00764 Arginosuccinate synthase D934_02530 PF01546 Peptidase family M20/M25/M40 D934_02530 PF07687 Peptidase dimerisation domain D934_02535 PF00696 Amino acid kinase family D934_02535 PF04768 Protein of unknown function (DUF619) D934_02540 PF01118 Semialdehyde dehydrogenase, NAD binding domain D934_02545 PF00206 Lyase D934_02550 PF00696 Amino acid kinase family D934_02550 PF01472 PUA domain D934_02595 PF00353 Hemolysin-type calcium-binding repeat (2 copies) D934_02595 PF06594 D934_02595 D934_02600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D934_02605 PF01325 Iron dependent repressor, N-terminal DNA binding domain D934_02605 PF02742 Iron dependent repressor, metal binding and dimerisation domain D934_02610 PF01566 D934_02610 D934_02615 PF04376 D934_02615 D934_02615 PF04377 D934_02615 D934_02630 PF13622 Thioesterase-like superfamily D934_02640 PF00082 Subtilase family D934_02640 PF03797 Autotransporter beta-domain D934_02640 PF12951 D934_02640 D934_02650 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D934_02650 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain D934_02655 PF01553 Acyltransferase D934_02670 PF00593 TonB dependent receptor D934_02675 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D934_02675 PF05221 S-adenosyl-L-homocysteine hydrolase D934_02680 PF00501 AMP-binding enzyme D934_02690 PF01351 Ribonuclease HII D934_02695 PF02684 D934_02695 D934_02700 PF00132 Bacterial transferase hexapeptide (six repeats) D934_02700 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D934_02705 PF07977 FabA-like domain D934_02710 PF00132 Bacterial transferase hexapeptide (six repeats) D934_02710 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D934_02710 PF14602 Hexapeptide repeat of succinyl-transferase D934_02715 PF01103 Surface antigen D934_02715 PF07244 Surface antigen variable number repeat D934_02720 PF02163 Peptidase family M50 D934_02725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D934_02725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal D934_02725 PF13288 DXP reductoisomerase C-terminal domain D934_02730 PF01148 Cytidylyltransferase family D934_02735 PF01255 Putative undecaprenyl diphosphate synthase D934_02740 PF01765 Ribosome recycling factor D934_02745 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D934_02750 PF01694 Rhomboid family D934_02755 PF08850 D934_02755 D934_02765 PF00696 Amino acid kinase family D934_02790 PF01081 KDPG and KHG aldolase D934_02795 PF00920 Dehydratase family D934_02800 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D934_02805 PF02685 Glucokinase D934_02810 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D934_02810 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D934_02815 PF00005 ABC transporter D934_02815 PF08402 TOBE domain D934_02820 PF01571 Aminomethyltransferase folate-binding domain D934_02820 PF08669 Glycine cleavage T-protein C-terminal barrel domain D934_02825 PF07896 Protein of unknown function (DUF1674) D934_02830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D934_02835 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D934_02840 PF00890 FAD binding domain D934_02840 PF02910 Fumarate reductase flavoprotein C-term D934_02845 PF13085 2Fe-2S iron-sulfur cluster binding domain D934_02845 PF13534 4Fe-4S dicluster domain D934_02850 PF03937 Flavinator of succinate dehydrogenase D934_02860 PF02687 D934_02860 D934_02860 PF12704 MacB-like periplasmic core domain D934_02865 PF00005 ABC transporter D934_02870 PF00753 Metallo-beta-lactamase superfamily D934_02870 PF03772 D934_02870 D934_02870 PF13567 D934_02870 D934_02875 PF01618 D934_02875 D934_02880 PF02472 Biopolymer transport protein ExbD/TolR D934_02885 PF00005 ABC transporter D934_02885 PF00664 ABC transporter transmembrane region D934_02890 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D934_02895 PF05954 Phage late control gene D protein (GPD) D934_02900 PF05489 Phage Tail Protein X D934_02910 PF10145 D934_02910 D934_02915 PF10109 D934_02915 D934_02920 PF04985 D934_02920 D934_02925 PF04984 Phage tail sheath protein D934_02925 PF17482 D934_02925 D934_02935 PF09684 D934_02935 D934_02940 PF04865 D934_02940 D934_02945 PF04965 Gene 25-like lysozyme D934_02950 PF04221 RelB antitoxin D934_02955 PF15738 D934_02955 D934_02960 PF04717 Phage-related baseplate assembly protein D934_02985 PF04586 D934_02985 D934_02985 PF05065 Phage capsid family D934_02990 PF05136 D934_02990 D934_03000 PF08774 VRR-NUC domain D934_03015 PF00176 SNF2 family N-terminal domain D934_03020 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D934_03025 PF00300 Histidine phosphatase superfamily (branch 1) D934_03030 PF04264 YceI-like domain D934_03035 PF13091 PLD-like domain D934_03040 PF13560 Helix-turn-helix domain D934_03055 PF00710 Asparaginase D934_03060 PF03358 NADPH-dependent FMN reductase D934_03065 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D934_03085 PF11191 Protein of unknown function (DUF2782) D934_03090 PF00476 DNA polymerase family A D934_03090 PF01367 5'-3' exonuclease, C-terminal SAM fold D934_03090 PF01612 3'-5' exonuclease D934_03090 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D934_03100 PF01113 Dihydrodipicolinate reductase, N-terminus D934_03100 PF05173 Dihydrodipicolinate reductase, C-terminus D934_03105 PF00117 Glutamine amidotransferase class-I D934_03105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D934_03110 PF02142 MGS-like domain D934_03110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D934_03110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D934_03115 PF01272 Transcription elongation factor, GreA/GreB, C-term D934_03115 PF03449 Transcription elongation factor, N-terminal D934_03125 PF01368 DHH family D934_03125 PF02272 DHHA1 domain D934_03130 PF00472 RF-1 domain D934_03130 PF03462 PCRF domain D934_03135 PF00152 tRNA synthetases class II (D, K and N) D934_03135 PF01336 OB-fold nucleic acid binding domain D934_03145 PF00072 Response regulator receiver domain D934_03145 PF00512 His Kinase A (phospho-acceptor) domain D934_03145 PF01627 Hpt domain D934_03145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_03150 PF00378 Enoyl-CoA hydratase/isomerase family D934_03155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D934_03155 PF00696 Amino acid kinase family D934_03155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D934_03165 PF08245 Mur ligase middle domain D934_03180 PF00293 NUDIX domain D934_03180 PF02581 Thiamine monophosphate synthase/TENI D934_03185 PF02219 Methylenetetrahydrofolate reductase D934_03190 PF04402 Protein of unknown function (DUF541) D934_03195 PF02545 Maf-like protein D934_03200 PF00575 S1 RNA binding domain D934_03200 PF10150 Ribonuclease E/G family D934_03210 PF13116 D934_03210 D934_03210 PF13502 D934_03210 D934_03215 PF01523 Putative modulator of DNA gyrase D934_03225 PF04751 Protein of unknown function (DUF615) D934_03230 PF01523 Putative modulator of DNA gyrase D934_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_03235 PF03466 LysR substrate binding domain D934_03240 PF03358 NADPH-dependent FMN reductase D934_03250 PF00107 Zinc-binding dehydrogenase D934_03250 PF08240 Alcohol dehydrogenase GroES-like domain D934_03255 PF01965 DJ-1/PfpI family D934_03265 PF00132 Bacterial transferase hexapeptide (six repeats) D934_03265 PF12804 MobA-like NTP transferase domain D934_03270 PF01817 Chorismate mutase type II D934_03275 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D934_03275 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D934_03280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_03280 PF02874 ATP synthase alpha/beta family, beta-barrel domain D934_03285 PF00231 ATP synthase D934_03290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D934_03290 PF00306 ATP synthase alpha/beta chain, C terminal domain D934_03290 PF02874 ATP synthase alpha/beta family, beta-barrel domain D934_03295 PF00213 ATP synthase delta (OSCP) subunit D934_03300 PF00430 ATP synthase B/B' CF(0) D934_03305 PF00137 ATP synthase subunit C D934_03310 PF00119 ATP synthase A chain D934_03320 PF00338 Ribosomal protein S10p/S20e D934_03325 PF00297 Ribosomal protein L3 D934_03330 PF00573 Ribosomal protein L4/L1 family D934_03335 PF00181 Ribosomal Proteins L2, RNA binding domain D934_03335 PF03947 Ribosomal Proteins L2, C-terminal domain D934_03340 PF00203 Ribosomal protein S19 D934_03345 PF00237 Ribosomal protein L22p/L17e D934_03350 PF00189 Ribosomal protein S3, C-terminal domain D934_03350 PF07650 KH domain D934_03355 PF00252 Ribosomal protein L16p/L10e D934_03360 PF00831 Ribosomal L29 protein D934_03365 PF00366 Ribosomal protein S17 D934_03370 PF00238 Ribosomal protein L14p/L23e D934_03375 PF00467 KOW motif D934_03375 PF17136 D934_03375 D934_03380 PF00281 Ribosomal protein L5 D934_03380 PF00673 ribosomal L5P family C-terminus D934_03385 PF00253 Ribosomal protein S14p/S29e D934_03390 PF00410 Ribosomal protein S8 D934_03395 PF00347 Ribosomal protein L6 D934_03400 PF00861 Ribosomal L18p/L5e family D934_03405 PF00333 Ribosomal protein S5, N-terminal domain D934_03405 PF03719 Ribosomal protein S5, C-terminal domain D934_03410 PF00828 Ribosomal protein L18e/L15 D934_03415 PF00344 SecY translocase D934_03420 PF00416 Ribosomal protein S13/S18 D934_03425 PF00411 Ribosomal protein S11 D934_03430 PF00163 Ribosomal protein S4/S9 N-terminal domain D934_03430 PF01479 S4 domain D934_03435 PF01000 RNA polymerase Rpb3/RpoA insert domain D934_03435 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D934_03435 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D934_03440 PF01196 Ribosomal protein L17 D934_03445 PF04380 D934_03445 D934_03450 PF01078 Magnesium chelatase, subunit ChlI D934_03450 PF13335 D934_03450 D934_03450 PF13541 Subunit ChlI of Mg-chelatase D934_03460 PF00561 alpha/beta hydrolase fold D934_03465 PF03280 Proteobacterial lipase chaperone protein D934_03475 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D934_03475 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D934_03475 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D934_03490 PF05697 Bacterial trigger factor protein (TF) D934_03490 PF05698 Bacterial trigger factor protein (TF) C-terminus D934_03495 PF00574 Clp protease D934_03500 PF06689 ClpX C4-type zinc finger D934_03500 PF07724 AAA domain (Cdc48 subfamily) D934_03500 PF10431 C-terminal, D2-small domain, of ClpB protein D934_03505 PF00004 ATPase family associated with various cellular activities (AAA) D934_03505 PF02190 ATP-dependent protease La (LON) domain D934_03505 PF05362 Lon protease (S16) C-terminal proteolytic domain D934_03510 PF00216 Bacterial DNA-binding protein D934_03525 PF13616 PPIC-type PPIASE domain D934_03525 PF13623 D934_03525 D934_03530 PF04332 D934_03530 D934_03540 PF00317 Ribonucleotide reductase, all-alpha domain D934_03540 PF02867 Ribonucleotide reductase, barrel domain D934_03545 PF00268 Ribonucleotide reductase, small chain D934_03550 PF00258 Flavodoxin D934_03555 PF00085 Thioredoxin D934_03560 PF00849 RNA pseudouridylate synthase D934_03565 PF13419 Haloacid dehalogenase-like hydrolase D934_03580 PF07209 D934_03580 D934_03585 PF00830 Ribosomal L28 family D934_03590 PF00471 Ribosomal protein L33 D934_03595 PF13091 PLD-like domain D934_03605 PF00043 Glutathione S-transferase, C-terminal domain D934_03605 PF02798 Glutathione S-transferase, N-terminal domain D934_03610 PF00056 lactate/malate dehydrogenase, NAD binding domain D934_03610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D934_03615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D934_03620 PF00009 Elongation factor Tu GTP binding domain D934_03620 PF00679 Elongation factor G C-terminus D934_03620 PF03144 Elongation factor Tu domain 2 D934_03625 PF09900 D934_03625 D934_03630 PF13437 HlyD family secretion protein D934_03645 PF00005 ABC transporter D934_03645 PF00664 ABC transporter transmembrane region D934_03645 PF03412 Peptidase C39 family D934_03655 PF01061 D934_03655 D934_03660 PF00005 ABC transporter D934_03665 PF05567 Neisseria PilC beta-propeller domain D934_03685 PF00271 Helicase conserved C-terminal domain D934_03685 PF04408 Helicase associated domain (HA2) D934_03685 PF08482 D934_03685 D934_03695 PF13185 GAF domain D934_03700 PF01103 Surface antigen D934_03700 PF07244 Surface antigen variable number repeat D934_03700 PF17243 D934_03700 D934_03705 PF04357 D934_03705 D934_03720 PF13714 Phosphoenolpyruvate phosphomutase D934_03765 PF04303 PrpF protein D934_03790 PF00207 Alpha-2-macroglobulin family D934_03790 PF01835 MG2 domain D934_03790 PF07703 Alpha-2-macroglobulin family N-terminal region D934_03790 PF11974 Alpha-2-macroglobulin MG1 domain D934_03795 PF07859 alpha/beta hydrolase fold D934_03800 PF12833 Helix-turn-helix domain D934_03800 PF12852 Cupin D934_03815 PF00929 Exonuclease D934_03820 PF00924 Mechanosensitive ion channel D934_03825 PF00391 PEP-utilising enzyme, mobile domain D934_03825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D934_03825 PF02896 PEP-utilising enzyme, TIM barrel domain D934_03830 PF03618 D934_03830 D934_03835 PF06853 D934_03835 D934_03840 PF00293 NUDIX domain D934_03850 PF03797 Autotransporter beta-domain D934_03860 PF04055 Radical SAM superfamily D934_03860 PF16881 D934_03860 D934_03865 PF03099 Biotin/lipoate A/B protein ligase family D934_03870 PF04359 Protein of unknown function (DUF493) D934_03875 PF16697 D934_03875 D934_03885 PF05597 D934_03885 D934_03890 PF04286 D934_03890 D934_03895 PF00571 CBS domain D934_03895 PF01595 D934_03895 D934_03895 PF03471 Transporter associated domain D934_03900 PF00450 Serine carboxypeptidase D934_03915 PF00204 DNA gyrase B D934_03915 PF00986 DNA gyrase B subunit, carboxyl terminus D934_03915 PF01751 Toprim domain D934_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_03925 PF00117 Glutamine amidotransferase class-I D934_03925 PF06418 CTP synthase N-terminus D934_03930 PF00793 DAHP synthetase I family D934_03935 PF00113 Enolase, C-terminal TIM barrel domain D934_03935 PF03952 Enolase, N-terminal domain D934_03940 PF04977 Septum formation initiator D934_03945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D934_03950 PF02542 YgbB family D934_03955 PF01713 Smr domain D934_03965 PF08450 SMP-30/Gluconolaconase/LRE-like region D934_03970 PF01946 Thi4 family D934_03970 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase D934_03975 PF13532 2OG-Fe(II) oxygenase superfamily D934_03980 PF03886 Protein of unknown function (DUF330) D934_03985 PF02470 D934_03985 D934_03990 PF00005 ABC transporter D934_03995 PF02405 D934_03995 D934_04000 PF06738 D934_04000 D934_04000 PF12821 D934_04000 D934_04020 PF06723 MreB/Mbl protein D934_04025 PF04085 rod shape-determining protein MreC D934_04030 PF04093 D934_04030 D934_04035 PF00905 Penicillin binding protein transpeptidase domain D934_04035 PF03717 Penicillin-binding Protein dimerisation domain D934_04040 PF01098 D934_04040 D934_04045 PF02547 Queuosine biosynthesis protein D934_04050 PF02824 TGS domain D934_04050 PF04607 Region found in RelA / SpoT proteins D934_04050 PF13291 ACT domain D934_04050 PF13328 HD domain D934_04065 PF03776 Septum formation topological specificity factor MinE D934_04070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D934_04075 PF03775 Septum formation inhibitor MinC, C-terminal domain D934_04075 PF05209 Septum formation inhibitor MinC, N-terminal domain D934_04080 PF00583 Acetyltransferase (GNAT) family D934_04105 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_04110 PF04264 YceI-like domain D934_04115 PF01292 Prokaryotic cytochrome b561 D934_04120 PF04264 YceI-like domain D934_04125 PF00072 Response regulator receiver domain D934_04125 PF00512 His Kinase A (phospho-acceptor) domain D934_04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_04125 PF07494 Two component regulator propeller D934_04125 PF07495 Y_Y_Y domain D934_04130 PF00145 C-5 cytosine-specific DNA methylase D934_04145 PF03235 D934_04145 D934_04150 PF01208 Uroporphyrinogen decarboxylase (URO-D) D934_04160 PF01202 Shikimate kinase D934_04165 PF01243 Pyridoxamine 5'-phosphate oxidase D934_04165 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D934_04170 PF00749 tRNA synthetases class I (E and Q), catalytic domain D934_04170 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D934_04180 PF03932 CutC family D934_04195 PF13531 Bacterial extracellular solute-binding protein D934_04200 PF00528 Binding-protein-dependent transport system inner membrane component D934_04205 PF00528 Binding-protein-dependent transport system inner membrane component D934_04210 PF00005 ABC transporter D934_04210 PF12857 D934_04210 D934_04215 PF03279 D934_04215 D934_04225 PF00140 Sigma-70 factor, region 1 D934_04225 PF03979 Sigma-70 factor, region 1 D934_04225 PF04539 Sigma-70 region 3 D934_04225 PF04542 Sigma-70 region 2 D934_04225 PF04545 Sigma-70, region 4 D934_04225 PF04546 Sigma-70, non-essential region D934_04230 PF00521 DNA gyrase/topoisomerase IV, subunit A D934_04230 PF03989 DNA gyrase C-terminal domain, beta-propeller D934_04235 PF01047 MarR family D934_04245 PF12697 Alpha/beta hydrolase family D934_04250 PF00155 Aminotransferase class I and II D934_04255 PF02628 D934_04255 D934_04260 PF01040 UbiA prenyltransferase family D934_04270 PF00753 Metallo-beta-lactamase superfamily D934_04275 PF01743 Poly A polymerase head domain D934_04275 PF01966 HD domain D934_04275 PF12627 Probable RNA and SrmB- binding site of polymerase A D934_04280 PF01464 Transglycosylase SLT domain D934_04280 PF14718 Soluble lytic murein transglycosylase L domain D934_04285 PF02666 D934_04285 D934_04290 PF02630 SCO1/SenC D934_04295 PF05175 Methyltransferase small domain D934_04300 PF01264 Chorismate synthase D934_04310 PF01118 Semialdehyde dehydrogenase, NAD binding domain D934_04310 PF02774 Semialdehyde dehydrogenase, dimerisation domain D934_04320 PF01416 tRNA pseudouridine synthase D934_04325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D934_04335 PF00291 Pyridoxal-phosphate dependent enzyme D934_04340 PF00290 Tryptophan synthase alpha chain D934_04345 PF13481 AAA domain D934_04345 PF13541 Subunit ChlI of Mg-chelatase D934_04350 PF00296 Luciferase-like monooxygenase D934_04360 PF00270 DEAD/DEAH box helicase D934_04360 PF00271 Helicase conserved C-terminal domain D934_04360 PF00570 HRDC domain D934_04360 PF09382 RQC domain D934_04360 PF16124 D934_04360 D934_04365 PF00210 Ferritin-like domain D934_04370 PF00270 DEAD/DEAH box helicase D934_04370 PF00271 Helicase conserved C-terminal domain D934_04370 PF04408 Helicase associated domain (HA2) D934_04370 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D934_04370 PF11898 D934_04370 D934_04375 PF02347 Glycine cleavage system P-protein D934_04385 PF00589 Phage integrase family D934_04390 PF13986 D934_04390 D934_04395 PF00176 SNF2 family N-terminal domain D934_04405 PF08774 VRR-NUC domain D934_04410 PF00476 DNA polymerase family A D934_04415 PF02498 D934_04415 D934_04420 PF10991 Protein of unknown function (DUF2815) D934_04425 PF10926 D934_04425 D934_04445 PF07603 D934_04445 D934_04455 PF00717 Peptidase S24-like D934_04455 PF13560 Helix-turn-helix domain D934_04460 PF15943 D934_04460 D934_04475 PF02498 D934_04475 D934_04480 PF08706 D934_04480 D934_04490 PF00959 Phage lysozyme D934_04495 PF16083 D934_04495 D934_04515 PF03237 Terminase-like family D934_04515 PF17289 D934_04515 D934_04520 PF16510 D934_04520 D934_04535 PF11651 P22 coat protein - gene protein 5 D934_04540 PF11650 P22 tail accessory factor D934_04545 PF11134 D934_04545 D934_04595 PF13385 Concanavalin A-like lectin/glucanases superfamily D934_04605 PF03626 D934_04605 D934_04610 PF00510 Cytochrome c oxidase subunit III D934_04615 PF00115 Cytochrome C and Quinol oxidase polypeptide I D934_04620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D934_04620 PF06481 COX Aromatic Rich Motif D934_04625 PF00348 Polyprenyl synthetase D934_04630 PF00436 Single-strand binding protein family D934_04640 PF13649 Methyltransferase domain D934_04645 PF00999 Sodium/hydrogen exchanger family D934_04650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D934_04665 PF03448 MgtE intracellular N domain D934_04670 PF00391 PEP-utilising enzyme, mobile domain D934_04670 PF02896 PEP-utilising enzyme, TIM barrel domain D934_04670 PF05524 PEP-utilising enzyme, N-terminal D934_04675 PF00381 PTS HPr component phosphorylation site D934_04680 PF03610 PTS system fructose IIA component D934_04685 PF03668 D934_04685 D934_04690 PF02603 HPr Serine kinase N terminus D934_04690 PF07475 HPr Serine kinase C-terminal domain D934_04695 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D934_04700 PF00309 D934_04700 D934_04700 PF04552 Sigma-54, DNA binding domain D934_04700 PF04963 Sigma-54 factor, core binding domain D934_04705 PF00005 ABC transporter D934_04705 PF12399 Branched-chain amino acid ATP-binding cassette transporter D934_04710 PF03968 OstA-like protein D934_04715 PF06835 Lipopolysaccharide-assembly, LptC-related D934_04720 PF08282 haloacid dehalogenase-like hydrolase D934_04725 PF00571 CBS domain D934_04725 PF01380 SIS domain D934_04730 PF01722 BolA-like protein D934_04735 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D934_04755 PF00132 Bacterial transferase hexapeptide (six repeats) D934_04760 PF13986 D934_04760 D934_04765 PF02769 AIR synthase related protein, C-terminal domain D934_04765 PF13507 CobB/CobQ-like glutamine amidotransferase domain D934_04770 PF10411 Disulfide bond isomerase protein N-terminus D934_04770 PF13098 Thioredoxin-like domain D934_04775 PF00589 Phage integrase family D934_04775 PF02899 Phage integrase, N-terminal SAM-like domain D934_04780 PF00520 Ion transport protein D934_04785 PF00202 Aminotransferase class-III D934_04790 PF04107 Glutamate-cysteine ligase family 2(GCS2) D934_04795 PF01926 50S ribosome-binding GTPase D934_04815 PF01323 DSBA-like thioredoxin domain D934_04820 PF01323 DSBA-like thioredoxin domain D934_04825 PF03372 Endonuclease/Exonuclease/phosphatase family D934_04830 PF04356 Protein of unknown function (DUF489) D934_04835 PF03054 tRNA methyl transferase D934_04840 PF00293 NUDIX domain D934_04845 PF02617 ATP-dependent Clp protease adaptor protein ClpS D934_04855 PF00004 ATPase family associated with various cellular activities (AAA) D934_04855 PF02861 Clp amino terminal domain D934_04855 PF07724 AAA domain (Cdc48 subfamily) D934_04855 PF10431 C-terminal, D2-small domain, of ClpB protein D934_04860 PF01176 Translation initiation factor 1A / IF-1 D934_04865 PF03588 Leucyl/phenylalanyl-tRNA protein transferase D934_04870 PF04339 D934_04870 D934_04875 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_04880 PF01580 FtsK/SpoIIIE family D934_04880 PF09397 Ftsk gamma domain D934_04880 PF13491 D934_04880 D934_04885 PF01841 Transglutaminase-like superfamily D934_04885 PF12969 Domain of Unknown Function with PDB structure (DUF3857) D934_04890 PF03548 Outer membrane lipoprotein carrier protein LolA D934_04895 PF05496 Holliday junction DNA helicase ruvB N-terminus D934_04895 PF12002 MgsA AAA+ ATPase C terminal D934_04895 PF16193 D934_04895 D934_04900 PF02537 D934_04900 D934_04910 PF00072 Response regulator receiver domain D934_04910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_04915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D934_04920 PF13561 Enoyl-(Acyl carrier protein) reductase D934_04925 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase D934_04935 PF02685 Glucokinase D934_04945 PF07690 Major Facilitator Superfamily D934_04950 PF00356 Bacterial regulatory proteins, lacI family D934_04950 PF13377 Periplasmic binding protein-like domain D934_04955 PF01380 SIS domain D934_04960 PF01979 Amidohydrolase family D934_04965 PF01039 Carboxyl transferase domain D934_04970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D934_04970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D934_04970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D934_04970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D934_04975 PF01522 Polysaccharide deacetylase D934_04980 PF00534 Glycosyl transferases group 1 D934_04980 PF13439 Glycosyltransferase Family 4 D934_04985 PF00355 Rieske [2Fe-2S] domain D934_04990 PF00266 Aminotransferase class-V D934_04995 PF01458 Uncharacterized protein family (UPF0051) D934_05000 PF00005 ABC transporter D934_05005 PF01458 Uncharacterized protein family (UPF0051) D934_05010 PF02082 Transcriptional regulator D934_05015 PF00856 SET domain D934_05025 PF01678 Diaminopimelate epimerase D934_05030 PF04340 Protein of unknown function, DUF484 D934_05035 PF00589 Phage integrase family D934_05035 PF02899 Phage integrase, N-terminal SAM-like domain D934_05040 PF00227 Proteasome subunit D934_05045 PF00004 ATPase family associated with various cellular activities (AAA) D934_05045 PF07724 AAA domain (Cdc48 subfamily) D934_05045 PF10431 C-terminal, D2-small domain, of ClpB protein D934_05050 PF10009 D934_05050 D934_05060 PF05954 Phage late control gene D protein (GPD) D934_05065 PF05489 Phage Tail Protein X D934_05080 PF10109 D934_05080 D934_05085 PF04985 D934_05085 D934_05090 PF04984 Phage tail sheath protein D934_05090 PF17482 D934_05090 D934_05100 PF09684 D934_05100 D934_05105 PF04865 D934_05105 D934_05110 PF04965 Gene 25-like lysozyme D934_05115 PF05973 D934_05115 D934_05120 PF13744 Helix-turn-helix domain D934_05125 PF01381 Helix-turn-helix D934_05130 PF04717 Phage-related baseplate assembly protein D934_05155 PF04586 D934_05155 D934_05155 PF05065 Phage capsid family D934_05160 PF05136 D934_05160 D934_05170 PF05876 D934_05170 D934_05175 PF07471 Phage DNA packaging protein Nu1 D934_05190 PF16083 D934_05190 D934_05195 PF00959 Phage lysozyme D934_05205 PF08706 D934_05205 D934_05210 PF02498 D934_05210 D934_05235 PF15943 D934_05235 D934_05240 PF00717 Peptidase S24-like D934_05305 PF10926 D934_05305 D934_05310 PF10991 Protein of unknown function (DUF2815) D934_05315 PF02498 D934_05315 D934_05320 PF00476 DNA polymerase family A D934_05325 PF08774 VRR-NUC domain D934_05330 PF07798 D934_05330 D934_05335 PF00176 SNF2 family N-terminal domain D934_05350 PF00589 Phage integrase family D934_05360 PF00271 Helicase conserved C-terminal domain D934_05360 PF02151 UvrB/uvrC motif D934_05360 PF04851 Type III restriction enzyme, res subunit D934_05360 PF12344 Ultra-violet resistance protein B D934_05365 PF07963 Prokaryotic N-terminal methylation motif D934_05365 PF12019 Type II transport protein GspH D934_05375 PF00701 Dihydrodipicolinate synthetase family D934_05380 PF13740 ACT domain D934_05385 PF00578 AhpC/TSA family D934_05390 PF13638 PIN domain D934_05395 PF02562 PhoH-like protein D934_05400 PF02562 PhoH-like protein D934_05415 PF00586 AIR synthase related protein, N-terminal domain D934_05415 PF02769 AIR synthase related protein, C-terminal domain D934_05420 PF01029 NusB family D934_05425 PF00885 6,7-dimethyl-8-ribityllumazine synthase D934_05430 PF00925 GTP cyclohydrolase II D934_05430 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D934_05435 PF00677 Lumazine binding domain D934_05440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D934_05440 PF01872 RibD C-terminal domain D934_05445 PF03477 ATP cone domain D934_05455 PF00464 Serine hydroxymethyltransferase D934_05460 PF00005 ABC transporter D934_05460 PF12848 ABC transporter D934_05465 PF06039 D934_05465 D934_05480 PF02578 Multi-copper polyphenol oxidoreductase laccase D934_05485 PF00849 RNA pseudouridylate synthase D934_05485 PF01479 S4 domain D934_05490 PF13525 Outer membrane lipoprotein D934_05500 PF02421 Ferrous iron transport protein B D934_05500 PF07664 D934_05500 D934_05500 PF07670 Nucleoside recognition D934_05505 PF04023 FeoA domain D934_05510 PF13231 D934_05510 D934_05515 PF01029 NusB family D934_05515 PF01189 NOL1/NOP2/sun family D934_05520 PF00551 Formyl transferase D934_05520 PF02911 Formyl transferase, C-terminal domain D934_05525 PF01327 Polypeptide deformylase D934_05530 PF01476 LysM domain D934_05535 PF02481 DNA recombination-mediator protein A D934_05540 PF04361 D934_05540 D934_05545 PF01131 DNA topoisomerase D934_05545 PF01751 Toprim domain D934_05545 PF13368 D934_05545 D934_05550 PF01300 Telomere recombination D934_05555 PF00132 Bacterial transferase hexapeptide (six repeats) D934_05575 PF01381 Helix-turn-helix D934_05580 PF13561 Enoyl-(Acyl carrier protein) reductase D934_05585 PF04386 Stringent starvation protein B D934_05590 PF00043 Glutathione S-transferase, C-terminal domain D934_05590 PF02798 Glutathione S-transferase, N-terminal domain D934_05595 PF02167 Cytochrome C1 family D934_05600 PF00032 Cytochrome b(C-terminal)/b6/petD D934_05600 PF00033 Cytochrome b(N-terminal)/b6/petB D934_05610 PF01464 Transglycosylase SLT domain D934_05615 PF00919 Uncharacterized protein family UPF0004 D934_05615 PF01938 TRAM domain D934_05615 PF04055 Radical SAM superfamily D934_05625 PF02562 PhoH-like protein D934_05630 PF02130 Uncharacterized protein family UPF0054 D934_05640 PF00571 CBS domain D934_05640 PF03471 Transporter associated domain D934_05645 PF13387 D934_05645 D934_05650 PF01544 CorA-like Mg2+ transporter protein D934_05675 PF05590 D934_05675 D934_05680 PF05590 D934_05680 D934_05685 PF13332 D934_05685 D934_05755 PF04591 Protein of unknown function, DUF596 D934_05775 PF06325 Ribosomal protein L11 methyltransferase (PrmA) D934_05785 PF01132 Elongation factor P (EF-P) OB domain D934_05785 PF08207 Elongation factor P (EF-P) KOW-like domain D934_05785 PF09285 Elongation factor P, C-terminal D934_05790 PF01565 FAD binding domain D934_05790 PF02913 FAD linked oxidases, C-terminal domain D934_05795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D934_05795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D934_05800 PF13520 Amino acid permease D934_05805 PF13520 Amino acid permease D934_05810 PF00596 Class II Aldolase and Adducin N-terminal domain D934_05815 PF03079 ARD/ARD' family D934_05825 PF01502 Phosphoribosyl-AMP cyclohydrolase D934_05825 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D934_05830 PF00977 Histidine biosynthesis protein D934_05835 PF00977 Histidine biosynthesis protein D934_05840 PF00117 Glutamine amidotransferase class-I D934_05845 PF00475 Imidazoleglycerol-phosphate dehydratase D934_05850 PF00155 Aminotransferase class I and II D934_05855 PF00815 Histidinol dehydrogenase D934_05860 PF01634 ATP phosphoribosyltransferase D934_05860 PF08029 HisG, C-terminal domain D934_05865 PF01371 Trp repressor protein D934_05875 PF03129 Anticodon binding domain D934_05875 PF13393 Histidyl-tRNA synthetase D934_05880 PF00291 Pyridoxal-phosphate dependent enzyme D934_05880 PF14821 Threonine synthase N terminus D934_05885 PF00288 GHMP kinases N terminal domain D934_05885 PF08544 GHMP kinases C terminal D934_05890 PF00696 Amino acid kinase family D934_05890 PF00742 Homoserine dehydrogenase D934_05890 PF03447 Homoserine dehydrogenase, NAD binding domain D934_05890 PF13840 ACT domain D934_05895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D934_05895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D934_05900 PF03652 Uncharacterised protein family (UPF0081) D934_05905 PF02622 Uncharacterized ACR, COG1678 D934_05910 PF00768 D-alanyl-D-alanine carboxypeptidase D934_05910 PF07943 Penicillin-binding protein 5, C-terminal domain D934_05920 PF00141 Peroxidase D934_05925 PF00226 DnaJ domain D934_05925 PF01556 DnaJ C terminal domain D934_05935 PF00011 Hsp20/alpha crystallin family D934_05940 PF00905 Penicillin binding protein transpeptidase domain D934_05940 PF00912 Transglycosylase D934_05940 PF06832 D934_05940 D934_05950 PF00593 TonB dependent receptor D934_05950 PF07715 TonB-dependent Receptor Plug Domain D934_05955 PF04542 Sigma-70 region 2 D934_05955 PF08281 Sigma-70, region 4 D934_05960 PF03872 Anti sigma-E protein RseA, N-terminal domain D934_05965 PF13180 PDZ domain D934_05965 PF13365 Trypsin-like peptidase domain D934_05970 PF00009 Elongation factor Tu GTP binding domain D934_05970 PF00679 Elongation factor G C-terminus D934_05970 PF03144 Elongation factor Tu domain 2 D934_05970 PF06421 GTP-binding protein LepA C-terminus D934_05975 PF00717 Peptidase S24-like D934_05980 PF16137 D934_05980 D934_05985 PF00035 Double-stranded RNA binding motif D934_05985 PF14622 Ribonuclease-III-like D934_05990 PF01926 50S ribosome-binding GTPase D934_05990 PF07650 KH domain D934_06000 PF02565 Recombination protein O C terminal D934_06000 PF11967 Recombination protein O N terminal D934_06005 PF02779 Transketolase, pyrimidine binding domain D934_06005 PF02780 Transketolase, C-terminal domain D934_06005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D934_06015 PF00474 Sodium:solute symporter family D934_06020 PF04341 D934_06020 D934_06025 PF00501 AMP-binding enzyme D934_06025 PF13193 AMP-binding enzyme C-terminal domain D934_06025 PF16177 D934_06025 D934_06030 PF02659 D934_06030 D934_06040 PF13360 PQQ-like domain D934_06045 PF00326 Prolyl oligopeptidase family D934_06045 PF07676 WD40-like Beta Propeller Repeat D934_06050 PF03169 D934_06050 D934_06065 PF01266 FAD dependent oxidoreductase D934_06065 PF16901 D934_06065 D934_06070 PF00230 Major intrinsic protein D934_06075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D934_06075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D934_06085 PF00106 short chain dehydrogenase D934_06085 PF13561 Enoyl-(Acyl carrier protein) reductase D934_06090 PF01263 Aldose 1-epimerase D934_06095 PF01717 Cobalamin-independent synthase, Catalytic domain D934_06095 PF08267 Cobalamin-independent synthase, N-terminal domain D934_06100 PF02677 D934_06100 D934_06105 PF00857 Isochorismatase family D934_06110 PF00501 AMP-binding enzyme D934_06115 PF07578 Lipid A Biosynthesis N-terminal domain D934_06120 PF00535 Glycosyl transferase family 2 D934_06125 PF01370 NAD dependent epimerase/dehydratase family D934_06130 PF02195 ParB-like nuclease domain D934_06135 PF13614 AAA domain D934_06140 PF00753 Metallo-beta-lactamase superfamily D934_06145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_06145 PF02403 Seryl-tRNA synthetase N-terminal domain D934_06150 PF03544 Gram-negative bacterial TonB protein C-terminal D934_06155 PF00589 Phage integrase family D934_06160 PF13986 D934_06160 D934_06165 PF00176 SNF2 family N-terminal domain D934_06175 PF08774 VRR-NUC domain D934_06185 PF02498 D934_06185 D934_06190 PF10991 Protein of unknown function (DUF2815) D934_06195 PF10926 D934_06195 D934_06225 PF07603 D934_06225 D934_06250 PF00717 Peptidase S24-like D934_06250 PF01381 Helix-turn-helix D934_06255 PF07022 Bacteriophage CI repressor helix-turn-helix domain D934_06285 PF02498 D934_06285 D934_06290 PF02498 D934_06290 D934_06295 PF03288 Poxvirus D5 protein-like D934_06295 PF08706 D934_06295 D934_06305 PF00959 Phage lysozyme D934_06310 PF16083 D934_06310 D934_06325 PF07471 Phage DNA packaging protein Nu1 D934_06330 PF05876 D934_06330 D934_06345 PF04586 D934_06345 D934_06345 PF05065 Phage capsid family D934_06370 PF04717 Phage-related baseplate assembly protein D934_06375 PF01381 Helix-turn-helix D934_06380 PF05015 Plasmid maintenance system killer protein D934_06385 PF04965 Gene 25-like lysozyme D934_06390 PF04865 D934_06390 D934_06395 PF09684 D934_06395 D934_06405 PF04984 Phage tail sheath protein D934_06405 PF17482 D934_06405 D934_06410 PF04985 D934_06410 D934_06415 PF10109 D934_06415 D934_06425 PF10145 D934_06425 D934_06430 PF06995 D934_06430 D934_06435 PF05489 Phage Tail Protein X D934_06440 PF05954 Phage late control gene D protein (GPD) D934_06450 PF00589 Phage integrase family D934_06455 PF00436 Single-strand binding protein family D934_06460 PF07505 D934_06460 D934_06470 PF00132 Bacterial transferase hexapeptide (six repeats) D934_06475 PF09588 YqaJ-like viral recombinase domain D934_06480 PF03837 D934_06480 D934_06485 PF10065 D934_06485 D934_06530 PF01934 Protein of unknown function DUF86 D934_06535 PF01909 Nucleotidyltransferase domain D934_06550 PF15943 D934_06550 D934_06570 PF02498 D934_06570 D934_06575 PF02498 D934_06575 D934_06590 PF00772 DnaB-like helicase N terminal domain D934_06590 PF03796 DnaB-like helicase C terminal domain D934_06605 PF00959 Phage lysozyme D934_06610 PF16083 D934_06610 D934_06630 PF17289 D934_06630 D934_06635 PF06381 D934_06635 D934_06640 PF13744 Helix-turn-helix domain D934_06645 PF05973 D934_06645 D934_06650 PF04233 D934_06650 D934_06655 PF09979 D934_06655 D934_06665 PF09950 D934_06665 D934_06675 PF13262 D934_06675 D934_06695 PF11863 D934_06695 D934_06700 PF11681 D934_06700 D934_06705 PF10876 D934_06705 D934_06715 PF01850 PIN domain D934_06720 PF04014 Antidote-toxin recognition MazE D934_06750 PF01381 Helix-turn-helix D934_06755 PF05973 D934_06755 D934_06760 PF04865 D934_06760 D934_06765 PF11041 D934_06765 D934_06770 PF07484 Phage Tail Collar Domain D934_06785 PF00005 ABC transporter D934_06790 PF00255 Glutathione peroxidase D934_06800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_06800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D934_06805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D934_06805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D934_06805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D934_06810 PF04102 SlyX D934_06815 PF09831 D934_06815 D934_06820 PF07690 Major Facilitator Superfamily D934_06825 PF00294 pfkB family carbohydrate kinase D934_06830 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) D934_06835 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_06840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_06860 PF01022 Bacterial regulatory protein, arsR family D934_06860 PF08241 Methyltransferase domain D934_06870 PF00144 Beta-lactamase D934_06875 PF13632 Glycosyl transferase family group 2 D934_06880 PF02230 Phospholipase/Carboxylesterase D934_06885 PF06580 D934_06885 D934_06890 PF00072 Response regulator receiver domain D934_06890 PF04397 LytTr DNA-binding domain D934_06895 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D934_06895 PF03900 Porphobilinogen deaminase, C-terminal domain D934_06900 PF04338 Protein of unknown function, DUF481 D934_06910 PF00437 Type II/IV secretion system protein D934_06915 PF00437 Type II/IV secretion system protein D934_06930 PF00535 Glycosyl transferase family 2 D934_06940 PF00535 Glycosyl transferase family 2 D934_06945 PF13723 D934_06945 D934_06950 PF00109 Beta-ketoacyl synthase, N-terminal domain D934_06950 PF02801 Beta-ketoacyl synthase, C-terminal domain D934_06960 PF12796 Ankyrin repeats (3 copies) D934_06965 PF03706 D934_06965 D934_06965 PF09924 Uncharacterized conserved protein (DUF2156) D934_06970 PF00589 Phage integrase family D934_06975 PF13986 D934_06975 D934_06985 PF00176 SNF2 family N-terminal domain D934_06995 PF08774 VRR-NUC domain D934_07000 PF00476 DNA polymerase family A D934_07005 PF02498 D934_07005 D934_07010 PF10991 Protein of unknown function (DUF2815) D934_07015 PF10926 D934_07015 D934_07040 PF07603 D934_07040 D934_07050 PF00717 Peptidase S24-like D934_07055 PF15943 D934_07055 D934_07070 PF02498 D934_07070 D934_07075 PF02498 D934_07075 D934_07080 PF03288 Poxvirus D5 protein-like D934_07080 PF08706 D934_07080 D934_07090 PF00959 Phage lysozyme D934_07095 PF16083 D934_07095 D934_07115 PF03237 Terminase-like family D934_07115 PF17289 D934_07115 D934_07120 PF16510 D934_07120 D934_07130 PF11651 P22 coat protein - gene protein 5 D934_07135 PF11650 P22 tail accessory factor D934_07140 PF11134 D934_07140 D934_07175 PF13385 Concanavalin A-like lectin/glucanases superfamily D934_07185 PF01042 Endoribonuclease L-PSP D934_07200 PF01430 Hsp33 protein D934_07205 PF00912 Transglycosylase D934_07210 PF00488 MutS domain V D934_07210 PF01624 MutS domain I D934_07210 PF05188 MutS domain II D934_07210 PF05190 MutS family domain IV D934_07210 PF05192 MutS domain III D934_07215 PF01168 Alanine racemase, N-terminal domain D934_07230 PF00114 Pilin (bacterial filament) D934_07230 PF07963 Prokaryotic N-terminal methylation motif D934_07265 PF05036 Sporulation related domain D934_07270 PF03309 Type III pantothenate kinase D934_07275 PF02237 Biotin protein ligase C terminal domain D934_07275 PF03099 Biotin/lipoate A/B protein ligase family D934_07275 PF08279 HTH domain D934_07280 PF07219 D934_07280 D934_07285 PF04375 D934_07285 D934_07290 PF02602 Uroporphyrinogen-III synthase HemD D934_07300 PF00581 Rhodanese-like domain D934_07305 PF02556 Preprotein translocase subunit SecB D934_07310 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D934_07310 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D934_07325 PF02086 D12 class N6 adenine-specific DNA methyltransferase D934_07355 PF12169 DNA polymerase III subunits gamma and tau domain III D934_07355 PF12170 DNA polymerase III tau subunit V interacting with alpha D934_07355 PF13177 DNA polymerase III, delta subunit D934_07360 PF02575 YbaB/EbfC DNA-binding family D934_07365 PF02132 RecR protein D934_07365 PF13662 Toprim domain D934_07370 PF01230 HIT domain D934_07375 PF03843 D934_07375 D934_07380 PF01841 Transglutaminase-like superfamily D934_07380 PF11992 D934_07380 D934_07385 PF01882 D934_07385 D934_07390 PF07726 ATPase family associated with various cellular activities (AAA) D934_07395 PF13231 D934_07395 D934_07405 PF02620 D934_07405 D934_07410 PF01783 Ribosomal L32p protein family D934_07415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D934_07415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D934_07420 PF00682 HMGL-like D934_07420 PF08502 LeuA allosteric (dimerisation) domain D934_07425 PF00291 Pyridoxal-phosphate dependent enzyme D934_07430 PF13710 ACT domain D934_07435 PF00205 Thiamine pyrophosphate enzyme, central domain D934_07435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D934_07435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D934_07440 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D934_07440 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain D934_07445 PF00595 PDZ domain (Also known as DHR or GLGF) D934_07445 PF03572 Peptidase family S41 D934_07445 PF11818 D934_07445 D934_07450 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D934_07455 PF02566 OsmC-like protein D934_07460 PF03969 AFG1-like ATPase D934_07465 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D934_07470 PF02492 CobW/HypB/UreG, nucleotide-binding domain D934_07470 PF07683 Cobalamin synthesis protein cobW C-terminal domain D934_07475 PF00551 Formyl transferase D934_07475 PF13740 ACT domain D934_07480 PF02036 SCP-2 sterol transfer family D934_07485 PF03109 D934_07485 D934_07490 PF13899 Thioredoxin-like D934_07495 PF07055 Enoyl reductase FAD binding domain D934_07495 PF12241 Trans-2-enoyl-CoA reductase catalytic region D934_07495 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase D934_07505 PF09916 D934_07505 D934_07510 PF06258 D934_07510 D934_07520 PF04264 YceI-like domain D934_07535 PF00543 Nitrogen regulatory protein P-II D934_07560 PF00072 Response regulator receiver domain D934_07560 PF00158 Sigma-54 interaction domain D934_07560 PF02954 Bacterial regulatory protein, Fis family D934_07565 PF00512 His Kinase A (phospho-acceptor) domain D934_07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_07585 PF01797 Transposase IS200 like D934_07590 PF00082 Subtilase family D934_07590 PF03797 Autotransporter beta-domain D934_07590 PF12951 D934_07590 D934_07600 PF01385 D934_07600 D934_07600 PF07282 D934_07600 D934_07610 PF00082 Subtilase family D934_07610 PF03797 Autotransporter beta-domain D934_07610 PF12951 D934_07610 D934_07615 PF03572 Peptidase family S41 D934_07615 PF14684 Tricorn protease C1 domain D934_07620 PF03572 Peptidase family S41 D934_07620 PF14684 Tricorn protease C1 domain D934_07625 PF05681 D934_07625 D934_07625 PF05683 Fumarase C-terminus D934_07630 PF00152 tRNA synthetases class II (D, K and N) D934_07630 PF01336 OB-fold nucleic acid binding domain D934_07630 PF02938 GAD domain D934_07635 PF06508 Queuosine biosynthesis protein QueC D934_07655 PF00436 Single-strand binding protein family D934_07670 PF00114 Pilin (bacterial filament) D934_07695 PF07603 D934_07695 D934_07730 PF00717 Peptidase S24-like D934_07730 PF01381 Helix-turn-helix D934_07735 PF15943 D934_07735 D934_07755 PF01807 CHC2 zinc finger D934_07760 PF05272 D934_07760 D934_07770 PF05876 D934_07770 D934_07775 PF05136 D934_07775 D934_07780 PF00574 Clp protease D934_07785 PF09956 D934_07785 D934_07795 PF00959 Phage lysozyme D934_07845 PF09356 D934_07845 D934_07845 PF09931 D934_07845 D934_07860 PF13550 D934_07860 D934_07895 PF14384 D934_07895 D934_07900 PF04365 Protein of unknown function (DUF497) D934_07905 PF01381 Helix-turn-helix D934_07910 PF01381 Helix-turn-helix D934_07915 PF00589 Phage integrase family D934_07920 PF01207 Dihydrouridine synthase (Dus) D934_07930 PF00072 Response regulator receiver domain D934_07930 PF00486 Transcriptional regulatory protein, C terminal D934_07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_07945 PF00438 S-adenosylmethionine synthetase, N-terminal domain D934_07945 PF02772 S-adenosylmethionine synthetase, central domain D934_07945 PF02773 S-adenosylmethionine synthetase, C-terminal domain D934_07960 PF00293 NUDIX domain D934_07965 PF04324 BFD-like [2Fe-2S] binding domain D934_07970 PF00210 Ferritin-like domain D934_07980 PF00072 Response regulator receiver domain D934_07980 PF00563 EAL domain D934_07980 PF00990 GGDEF domain D934_07990 PF04519 D934_07990 D934_07995 PF01521 Iron-sulphur cluster biosynthesis D934_08000 PF03741 D934_08000 D934_08005 PF10672 S-adenosylmethionine-dependent methyltransferase D934_08015 PF13520 Amino acid permease D934_08025 PF00528 Binding-protein-dependent transport system inner membrane component D934_08030 PF00005 ABC transporter D934_08030 PF09821 D934_08030 D934_08035 PF02646 D934_08035 D934_08045 PF04333 D934_08045 D934_08050 PF13466 STAS domain D934_08055 PF05494 Toluene tolerance, Ttg2 D934_08060 PF02470 D934_08060 D934_08065 PF02405 D934_08065 D934_08070 PF00005 ABC transporter D934_08075 PF04257 Exodeoxyribonuclease V, gamma subunit D934_08080 PF00580 UvrD/REP helicase N-terminal domain D934_08080 PF12705 PD-(D/E)XK nuclease superfamily D934_08080 PF13361 UvrD-like helicase C-terminal domain D934_08090 PF13245 Part of AAA domain D934_08090 PF13538 UvrD-like helicase C-terminal domain D934_08100 PF00579 tRNA synthetases class I (W and Y) D934_08115 PF01555 DNA methylase D934_08120 PF15515 MvaI/BcnI restriction endonuclease family D934_08130 PF01807 CHC2 zinc finger D934_08130 PF08275 DNA primase catalytic core, N-terminal domain D934_08130 PF08278 DNA primase DnaG DnaB-binding D934_08130 PF10410 DnaB-helicase binding domain of primase D934_08130 PF13662 Toprim domain D934_08135 PF03631 D934_08135 D934_08140 PF09424 Yqey-like protein D934_08150 PF01165 Ribosomal protein S21 D934_08155 PF00814 Glycoprotease family D934_08160 PF02152 Dihydroneopterin aldolase D934_08165 PF00924 Mechanosensitive ion channel D934_08170 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_08170 PF01915 Glycosyl hydrolase family 3 C-terminal domain D934_08170 PF14310 Fibronectin type III-like domain D934_08175 PF00583 Acetyltransferase (GNAT) family D934_08185 PF01066 CDP-alcohol phosphatidyltransferase D934_08190 PF13511 D934_08190 D934_08195 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_08195 PF03129 Anticodon binding domain D934_08195 PF04073 Aminoacyl-tRNA editing domain D934_08200 PF00816 H-NS histone family D934_08205 PF04342 D934_08205 D934_08210 PF00072 Response regulator receiver domain D934_08215 PF00107 Zinc-binding dehydrogenase D934_08220 PF01145 SPFH domain / Band 7 family D934_08225 PF01145 SPFH domain / Band 7 family D934_08230 PF09838 D934_08230 D934_08235 PF00709 Adenylosuccinate synthetase D934_08240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D934_08240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D934_08245 PF00334 Nucleoside diphosphate kinase D934_08250 PF04055 Radical SAM superfamily D934_08255 PF13181 Tetratricopeptide repeat D934_08260 PF13413 Helix-turn-helix domain D934_08260 PF13464 D934_08260 D934_08265 PF09976 Tetratricopeptide repeat D934_08270 PF13360 PQQ-like domain D934_08275 PF01926 50S ribosome-binding GTPase D934_08275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D934_08285 PF00581 Rhodanese-like domain D934_08285 PF00899 ThiF family D934_08295 PF00563 EAL domain D934_08295 PF12792 D934_08295 D934_08305 PF03641 Possible lysine decarboxylase D934_08305 PF11892 Domain of unknown function (DUF3412) D934_08305 PF14793 Domain of unknown function (DUF4478) D934_08310 PF07963 Prokaryotic N-terminal methylation motif D934_08310 PF12019 Type II transport protein GspH D934_08320 PF16074 D934_08320 D934_08325 PF14341 D934_08325 D934_08330 PF05567 Neisseria PilC beta-propeller domain D934_08335 PF07963 Prokaryotic N-terminal methylation motif D934_08335 PF16732 D934_08335 D934_08345 PF00589 Phage integrase family D934_08350 PF13986 D934_08350 D934_08355 PF00436 Single-strand binding protein family D934_08360 PF03374 D934_08360 D934_08360 PF09669 D934_08360 D934_08375 PF09588 YqaJ-like viral recombinase domain D934_08380 PF03837 D934_08380 D934_08385 PF10065 D934_08385 D934_08425 PF00717 Peptidase S24-like D934_08425 PF01381 Helix-turn-helix D934_08445 PF02498 D934_08445 D934_08450 PF02498 D934_08450 D934_08455 PF02498 D934_08455 D934_08460 PF02498 D934_08460 D934_08475 PF00772 DnaB-like helicase N terminal domain D934_08475 PF03796 DnaB-like helicase C terminal domain D934_08485 PF04365 Protein of unknown function (DUF497) D934_08490 PF14384 D934_08490 D934_08495 PF00959 Phage lysozyme D934_08500 PF16083 D934_08500 D934_08520 PF17289 D934_08520 D934_08525 PF06381 D934_08525 D934_08530 PF13744 Helix-turn-helix domain D934_08535 PF05973 D934_08535 D934_08540 PF04233 D934_08540 D934_08545 PF09979 D934_08545 D934_08555 PF09950 D934_08555 D934_08565 PF13262 D934_08565 D934_08585 PF11863 D934_08585 D934_08590 PF11681 D934_08590 D934_08595 PF10876 D934_08595 D934_08605 PF01850 PIN domain D934_08610 PF04014 Antidote-toxin recognition MazE D934_08640 PF01381 Helix-turn-helix D934_08645 PF05973 D934_08645 D934_08650 PF04865 D934_08650 D934_08655 PF11041 D934_08655 D934_08660 PF07484 Phage Tail Collar Domain D934_08665 PF01381 Helix-turn-helix D934_08695 PF02590 Predicted SPOUT methyltransferase D934_08700 PF00593 TonB dependent receptor D934_08700 PF07715 TonB-dependent Receptor Plug Domain D934_08705 PF02600 Disulfide bond formation protein DsbB D934_08720 PF00691 OmpA family D934_08720 PF13505 Outer membrane protein beta-barrel domain D934_08725 PF01565 FAD binding domain D934_08725 PF02913 FAD linked oxidases, C-terminal domain D934_08730 PF02824 TGS domain D934_08730 PF04607 Region found in RelA / SpoT proteins D934_08730 PF13291 ACT domain D934_08730 PF13328 HD domain D934_08735 PF01042 Endoribonuclease L-PSP D934_08740 PF00270 DEAD/DEAH box helicase D934_08740 PF00271 Helicase conserved C-terminal domain D934_08740 PF17191 D934_08740 D934_08745 PF00067 Cytochrome P450 D934_08750 PF03583 Secretory lipase D934_08755 PF03583 Secretory lipase D934_08760 PF00772 DnaB-like helicase N terminal domain D934_08760 PF03796 DnaB-like helicase C terminal domain D934_08770 PF00691 OmpA family D934_08770 PF13488 D934_08770 D934_08780 PF00294 pfkB family carbohydrate kinase D934_08785 PF00248 Aldo/keto reductase family D934_08790 PF00905 Penicillin binding protein transpeptidase domain D934_08790 PF00912 Transglycosylase D934_08790 PF17092 D934_08790 D934_08800 PF05137 D934_08800 D934_08805 PF04350 Pilus assembly protein, PilO D934_08810 PF04351 Pilus assembly protein, PilP D934_08815 PF00263 D934_08815 D934_08815 PF03958 Bacterial type II/III secretion system short domain D934_08815 PF07660 Secretin and TonB N terminus short domain D934_08820 PF01569 PAP2 superfamily D934_08825 PF00884 Sulfatase D934_08825 PF08019 D934_08825 D934_08835 PF02581 Thiamine monophosphate synthase/TENI D934_08840 PF00301 Rubredoxin D934_08845 PF00004 ATPase family associated with various cellular activities (AAA) D934_08845 PF02861 Clp amino terminal domain D934_08845 PF07724 AAA domain (Cdc48 subfamily) D934_08845 PF10431 C-terminal, D2-small domain, of ClpB protein D934_08850 PF17067 D934_08850 D934_08855 PF03203 D934_08855 D934_08860 PF00593 TonB dependent receptor D934_08860 PF07715 TonB-dependent Receptor Plug Domain D934_08870 PF11112 D934_08870 D934_08875 PF00436 Single-strand binding protein family D934_08890 PF00114 Pilin (bacterial filament) D934_08915 PF07603 D934_08915 D934_08950 PF00717 Peptidase S24-like D934_08950 PF01381 Helix-turn-helix D934_08955 PF15943 D934_08955 D934_08975 PF01807 CHC2 zinc finger D934_08980 PF05272 D934_08980 D934_08990 PF05876 D934_08990 D934_08995 PF05136 D934_08995 D934_09000 PF00574 Clp protease D934_09005 PF09956 D934_09005 D934_09015 PF00959 Phage lysozyme D934_09065 PF09356 D934_09065 D934_09065 PF09931 D934_09065 D934_09080 PF13550 D934_09080 D934_09105 PF02086 D12 class N6 adenine-specific DNA methyltransferase D934_09115 PF01850 PIN domain D934_09125 PF12472 D934_09125 D934_09135 PF02486 D934_09135 D934_09140 PF02303 Helix-destabilising protein D934_09165 PF05707 Zonular occludens toxin (Zot) D934_09190 PF12472 D934_09190 D934_09200 PF02486 D934_09200 D934_09210 PF02452 PemK-like protein D934_09215 PF11455 D934_09215 D934_09220 PF12472 D934_09220 D934_09235 PF02486 D934_09235 D934_09240 PF02303 Helix-destabilising protein D934_09250 PF10389 Bacteriophage coat protein B D934_09260 PF10734 D934_09260 D934_09265 PF05707 Zonular occludens toxin (Zot) D934_09300 PF05707 Zonular occludens toxin (Zot) D934_09305 PF10734 D934_09305 D934_09345 PF05707 Zonular occludens toxin (Zot) D934_09370 PF02486 D934_09370 D934_09390 PF00300 Histidine phosphatase superfamily (branch 1) D934_09395 PF10459 Peptidase S46 D934_09400 PF01964 ThiC family D934_09400 PF13667 ThiC-associated domain D934_09405 PF00175 Oxidoreductase NAD-binding domain D934_09405 PF00970 Oxidoreductase FAD-binding domain D934_09410 PF00255 Glutathione peroxidase D934_09415 PF00854 POT family D934_09420 PF04493 Endonuclease V D934_09425 PF00300 Histidine phosphatase superfamily (branch 1) D934_09430 PF04055 Radical SAM superfamily D934_09430 PF13394 4Fe-4S single cluster domain D934_09435 PF13525 Outer membrane lipoprotein D934_09435 PF16331 D934_09435 D934_09440 PF00691 OmpA family D934_09445 PF04052 TolB amino-terminal domain D934_09445 PF07676 WD40-like Beta Propeller Repeat D934_09450 PF13103 TonB C terminal D934_09455 PF02472 Biopolymer transport protein ExbD/TolR D934_09460 PF01618 D934_09460 D934_09465 PF03061 Thioesterase superfamily D934_09470 PF05491 Holliday junction DNA helicase ruvB C-terminus D934_09470 PF05496 Holliday junction DNA helicase ruvB N-terminus D934_09475 PF02705 D934_09475 D934_09480 PF01330 RuvA N terminal domain D934_09480 PF07499 RuvA, C-terminal domain D934_09480 PF14520 Helix-hairpin-helix domain D934_09485 PF02075 Crossover junction endodeoxyribonuclease RuvC D934_09490 PF01709 Transcriptional regulator D934_09495 PF04362 Bacterial Fe(2+) trafficking D934_09500 PF00633 Helix-hairpin-helix motif D934_09500 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_09500 PF14815 NUDIX domain D934_09505 PF00448 SRP54-type protein, GTPase domain D934_09505 PF02881 SRP54-type protein, helical bundle domain D934_09515 PF14279 D934_09515 D934_09525 PF01026 TatD related DNase D934_09535 PF00425 chorismate binding enzyme D934_09535 PF04715 Anthranilate synthase component I, N terminal region D934_09540 PF00117 Glutamine amidotransferase class-I D934_09545 PF00501 AMP-binding enzyme D934_09555 PF14518 Iron-containing redox enzyme D934_09560 PF03358 NADPH-dependent FMN reductase D934_09565 PF01371 Trp repressor protein D934_09570 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D934_09570 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D934_09575 PF02445 Quinolinate synthetase A protein D934_09580 PF00890 FAD binding domain D934_09580 PF02910 Fumarate reductase flavoprotein C-term D934_09585 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D934_09585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D934_09625 PF03372 Endonuclease/Exonuclease/phosphatase family D934_09630 PF01648 4'-phosphopantetheinyl transferase superfamily D934_09635 PF02527 rRNA small subunit methyltransferase G D934_09645 PF00375 Sodium:dicarboxylate symporter family D934_09660 PF01625 Peptide methionine sulfoxide reductase D934_09665 PF08332 Calcium/calmodulin dependent protein kinase II Association D934_09675 PF00216 Bacterial DNA-binding protein D934_09680 PF01432 Peptidase family M3 D934_09685 PF06903 D934_09685 D934_09690 PF08245 Mur ligase middle domain D934_09695 PF05036 Sporulation related domain D934_09705 PF13522 Glutamine amidotransferase domain D934_09710 PF01584 CheW-like domain D934_09715 PF01339 CheB methylesterase D934_09720 PF00072 Response regulator receiver domain D934_09720 PF01584 CheW-like domain D934_09720 PF01627 Hpt domain D934_09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_09720 PF02895 Signal transducing histidine kinase, homodimeric domain D934_09725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D934_09730 PF01584 CheW-like domain D934_09735 PF00072 Response regulator receiver domain D934_09740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain D934_09740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain D934_09745 PF03544 Gram-negative bacterial TonB protein C-terminal D934_09755 PF02092 D934_09755 D934_09755 PF05746 DALR anticodon binding domain D934_09760 PF02091 Glycyl-tRNA synthetase alpha subunit D934_09765 PF00795 Carbon-nitrogen hydrolase D934_09765 PF02540 NAD synthase D934_09780 PF03692 D934_09780 D934_09785 PF00561 alpha/beta hydrolase fold D934_09790 PF04851 Type III restriction enzyme, res subunit D934_09795 PF01555 DNA methylase D934_09805 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D934_09805 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D934_09810 PF13698 D934_09810 D934_09815 PF00588 SpoU rRNA Methylase family D934_09825 PF01808 AICARFT/IMPCHase bienzyme D934_09825 PF02142 MGS-like domain D934_09830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D934_09830 PF02843 Phosphoribosylglycinamide synthetase, C domain D934_09830 PF02844 Phosphoribosylglycinamide synthetase, N domain D934_09840 PF12805 D934_09840 D934_09840 PF13515 D934_09840 D934_09850 PF03895 YadA-like C-terminal region D934_09850 PF05658 Head domain of trimeric autotransporter adhesin D934_09850 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_09855 PF01227 GTP cyclohydrolase I D934_09860 PF00132 Bacterial transferase hexapeptide (six repeats) D934_09865 PF00588 SpoU rRNA Methylase family D934_09865 PF08032 RNA 2'-O ribose methyltransferase substrate binding D934_09870 PF00575 S1 RNA binding domain D934_09870 PF00773 RNB domain D934_09870 PF08206 Ribonuclease B OB domain D934_09880 PF00578 AhpC/TSA family D934_09885 PF00925 GTP cyclohydrolase II D934_09895 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D934_09900 PF00535 Glycosyl transferase family 2 D934_09905 PF04932 D934_09905 D934_09910 PF01381 Helix-turn-helix D934_09915 PF11906 D934_09915 D934_09920 PF02954 Bacterial regulatory protein, Fis family D934_09925 PF01063 Aminotransferase class IV D934_09930 PF01883 Domain of unknown function DUF59 D934_09945 PF07793 D934_09945 D934_09955 PF07793 D934_09955 D934_09960 PF00881 Nitroreductase family D934_09965 PF00293 NUDIX domain D934_09970 PF00557 Metallopeptidase family M24 D934_09970 PF05195 Aminopeptidase P, N-terminal domain D934_09975 PF03695 Uncharacterised protein family (UPF0149) D934_09985 PF05164 Cell division protein ZapA D934_09990 PF01812 5-formyltetrahydrofolate cyclo-ligase family D934_09995 PF01878 EVE domain D934_10000 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D934_10010 PF00999 Sodium/hydrogen exchanger family D934_10025 PF00929 Exonuclease D934_10025 PF08411 Exonuclease C-terminal D934_10030 PF09365 D934_10030 D934_10040 PF13662 Toprim domain D934_10060 PF16509 D934_10060 D934_10065 PF00239 Resolvase, N terminal domain D934_10070 PF00239 Resolvase, N terminal domain D934_10075 PF16762 D934_10075 D934_10080 PF13470 D934_10080 D934_10085 PF00106 short chain dehydrogenase D934_10090 PF00873 AcrB/AcrD/AcrF family D934_10095 PF16576 D934_10095 D934_10100 PF00440 Bacterial regulatory proteins, tetR family D934_10110 PF05015 Plasmid maintenance system killer protein D934_10120 PF03743 Bacterial conjugation TrbI-like protein D934_10125 PF04335 VirB8 protein D934_10130 PF03135 D934_10130 D934_10140 PF05101 D934_10140 D934_10145 PF04956 D934_10145 D934_10150 PF00437 Type II/IV secretion system protein D934_10155 PF13662 Toprim domain D934_10160 PF00239 Resolvase, N terminal domain D934_10165 PF07883 Cupin domain D934_10170 PF06189 D934_10170 D934_10175 PF01513 ATP-NAD kinase D934_10180 PF05088 D934_10180 D934_10180 PF12466 D934_10180 D934_10190 PF16576 D934_10190 D934_10200 PF00132 Bacterial transferase hexapeptide (six repeats) D934_10205 PF02649 Type I GTP cyclohydrolase folE2 D934_10210 PF08241 Methyltransferase domain D934_10215 PF05118 Aspartyl/Asparaginyl beta-hydroxylase D934_10220 PF02698 DUF218 domain D934_10240 PF01134 Glucose inhibited division protein A D934_10240 PF13932 GidA associated domain 3 D934_10245 PF13274 D934_10245 D934_10280 PF13550 D934_10280 D934_10290 PF13986 D934_10290 D934_10300 PF00206 Lyase D934_10300 PF10415 Fumarase C C-terminus D934_10305 PF00206 Lyase D934_10305 PF08328 Adenylosuccinate lyase C-terminal D934_10310 PF08007 Cupin superfamily protein D934_10315 PF00676 Dehydrogenase E1 component D934_10315 PF02779 Transketolase, pyrimidine binding domain D934_10315 PF16078 D934_10315 D934_10315 PF16870 D934_10315 D934_10320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D934_10320 PF00364 Biotin-requiring enzyme D934_10320 PF02817 e3 binding domain D934_10330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D934_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_10340 PF05433 D934_10340 D934_10345 PF00899 ThiF family D934_10360 PF10439 D934_10360 D934_10365 PF00027 Cyclic nucleotide-binding domain D934_10365 PF00325 Bacterial regulatory proteins, crp family D934_10370 PF02675 S-adenosylmethionine decarboxylase D934_10375 PF03232 D934_10375 D934_10380 PF00572 Ribosomal protein L13 D934_10385 PF00380 Ribosomal protein S9/S16 D934_10390 PF00285 Citrate synthase D934_10395 PF01197 Ribosomal protein L31 D934_10400 PF00814 Glycoprotease family D934_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_10405 PF03466 LysR substrate binding domain D934_10410 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_10410 PF13192 Thioredoxin domain D934_10415 PF00578 AhpC/TSA family D934_10420 PF03895 YadA-like C-terminal region D934_10420 PF05658 Head domain of trimeric autotransporter adhesin D934_10420 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_10430 PF00263 D934_10430 D934_10430 PF03958 Bacterial type II/III secretion system short domain D934_10440 PF10741 D934_10440 D934_10445 PF05137 D934_10445 D934_10450 PF03934 Type II secretion system (T2SS), protein K D934_10460 PF07963 Prokaryotic N-terminal methylation motif D934_10470 PF08334 Type II secretion system (T2SS), protein G D934_10485 PF00482 Type II secretion system (T2SS), protein F D934_10490 PF00437 Type II/IV secretion system protein D934_10490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D934_10495 PF03895 YadA-like C-terminal region D934_10495 PF05658 Head domain of trimeric autotransporter adhesin D934_10495 PF05662 Coiled stalk of trimeric autotransporter adhesin D934_10500 PF03547 D934_10500 D934_10505 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D934_10515 PF05175 Methyltransferase small domain D934_10520 PF00561 alpha/beta hydrolase fold D934_10525 PF07238 PilZ domain D934_10530 PF07793 D934_10530 D934_10535 PF04055 Radical SAM superfamily D934_10535 PF06969 HemN C-terminal domain D934_10540 PF01725 Ham1 family D934_10545 PF01138 3' exoribonuclease family, domain 1 D934_10545 PF03725 3' exoribonuclease family, domain 2 D934_10550 PF03755 D934_10550 D934_10550 PF08340 D934_10550 D934_10555 PF00625 Guanylate kinase D934_10560 PF01192 RNA polymerase Rpb6 D934_10565 PF00009 Elongation factor Tu GTP binding domain D934_10565 PF01583 Adenylylsulphate kinase D934_10570 PF01507 Phosphoadenosine phosphosulfate reductase family D934_10575 PF00175 Oxidoreductase NAD-binding domain D934_10575 PF00258 Flavodoxin D934_10575 PF00667 FAD binding domain D934_10580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D934_10580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D934_10585 PF01507 Phosphoadenosine phosphosulfate reductase family D934_10605 PF02643 Uncharacterized ACR, COG1430 D934_10610 PF13369 D934_10610 D934_10610 PF13371 Tetratricopeptide repeat D934_10615 PF00816 H-NS histone family D934_10620 PF01047 MarR family D934_10625 PF13899 Thioredoxin-like D934_10630 PF01433 Peptidase family M1 D934_10630 PF09127 Leukotriene A4 hydrolase, C-terminal D934_10635 PF01209 ubiE/COQ5 methyltransferase family D934_10640 PF00589 Phage integrase family D934_10645 PF13986 D934_10645 D934_10660 PF01555 DNA methylase D934_10670 PF01541 GIY-YIG catalytic domain D934_10670 PF02151 UvrB/uvrC motif D934_10670 PF08459 UvrC Helix-hairpin-helix N-terminal D934_10675 PF01066 CDP-alcohol phosphatidyltransferase D934_10695 PF00490 Delta-aminolevulinic acid dehydratase D934_10705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D934_10710 PF11140 D934_10710 D934_10715 PF13610 D934_10715 D934_10725 PF00202 Aminotransferase class-III D934_10735 PF02348 Cytidylyltransferase D934_10740 PF01451 Low molecular weight phosphotyrosine protein phosphatase D934_10745 PF01555 DNA methylase D934_10755 PF05015 Plasmid maintenance system killer protein D934_10760 PF01381 Helix-turn-helix D934_10765 PF05534 D934_10765 D934_10790 PF00239 Resolvase, N terminal domain D934_10790 PF02796 Helix-turn-helix domain of resolvase D934_10795 PF12146 Putative lysophospholipase D934_10800 PF16509 D934_10800 D934_10815 PF00239 Resolvase, N terminal domain D934_10815 PF02796 Helix-turn-helix domain of resolvase D934_10830 PF04255 Protein of unknown function (DUF433) D934_10835 PF01402 Ribbon-helix-helix protein, copG family D934_10840 PF05016 Plasmid stabilisation system protein D934_10845 PF04865 D934_10845 D934_10875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D934_10880 PF00800 Prephenate dehydratase D934_10880 PF01817 Chorismate mutase type II D934_10880 PF01842 ACT domain D934_10885 PF00266 Aminotransferase class-V D934_10890 PF03544 Gram-negative bacterial TonB protein C-terminal D934_10895 PF12679 D934_10895 D934_10900 PF00005 ABC transporter D934_10905 PF00561 alpha/beta hydrolase fold D934_10905 PF08386 TAP-like protein D934_10910 PF00186 Dihydrofolate reductase D934_10915 PF00303 Thymidylate synthase D934_10920 PF01790 D934_10920 D934_10925 PF01219 Prokaryotic diacylglycerol kinase D934_10930 PF00072 Response regulator receiver domain D934_10930 PF00486 Transcriptional regulatory protein, C terminal D934_10935 PF01842 ACT domain D934_10935 PF02153 Prephenate dehydrogenase D934_10940 PF00226 DnaJ domain D934_10940 PF00684 DnaJ central domain D934_10940 PF01556 DnaJ C terminal domain D934_10945 PF00012 Hsp70 protein D934_10950 PF01025 GrpE D934_10955 PF01628 HrcA protein C terminal domain D934_10955 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D934_10960 PF02463 RecF/RecN/SMC N terminal domain D934_10965 PF01475 Ferric uptake regulator family D934_10970 PF04355 SmpA / OmlA family D934_10975 PF03658 RnfH family Ubiquitin D934_10980 PF03364 Polyketide cyclase / dehydrase and lipid transport D934_10985 PF01668 SmpB protein D934_10990 PF03797 Autotransporter beta-domain D934_10995 PF00313 'Cold-shock' DNA-binding domain D934_11000 PF01048 Phosphorylase superfamily D934_11005 PF00156 Phosphoribosyl transferase domain D934_11010 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_11015 PF01928 CYTH domain D934_11020 PF05958 tRNA (Uracil-5-)-methyltransferase D934_11025 PF00072 Response regulator receiver domain D934_11025 PF01627 Hpt domain D934_11030 PF03808 D934_11030 D934_11040 PF13440 D934_11040 D934_11050 PF00534 Glycosyl transferases group 1 D934_11050 PF13439 Glycosyltransferase Family 4 D934_11055 PF01757 D934_11055 D934_11065 PF02397 D934_11065 D934_11065 PF13727 CoA-binding domain D934_11070 PF02706 Chain length determinant protein D934_11070 PF13807 D934_11070 D934_11075 PF02563 Polysaccharide biosynthesis/export protein D934_11075 PF10531 SLBB domain D934_11080 PF00180 Isocitrate/isopropylmalate dehydrogenase D934_11085 PF00694 Aconitase C-terminal domain D934_11090 PF00330 Aconitase family (aconitate hydratase) D934_11105 PF14489 QueF-like protein D934_11105 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D934_11110 PF16576 D934_11110 D934_11115 PF00873 AcrB/AcrD/AcrF family D934_11120 PF00873 AcrB/AcrD/AcrF family D934_11130 PF00107 Zinc-binding dehydrogenase D934_11130 PF08240 Alcohol dehydrogenase GroES-like domain D934_11140 PF01183 Glycosyl hydrolases family 25 D934_11155 PF00462 Glutaredoxin D934_11155 PF00581 Rhodanese-like domain D934_11160 PF01522 Polysaccharide deacetylase D934_11165 PF00155 Aminotransferase class I and II D934_11170 PF00005 ABC transporter D934_11170 PF00664 ABC transporter transmembrane region D934_11170 PF03412 Peptidase C39 family D934_11175 PF13437 HlyD family secretion protein D934_11205 PF00353 Hemolysin-type calcium-binding repeat (2 copies) D934_11205 PF06594 D934_11205 D934_11220 PF13086 AAA domain D934_11220 PF13087 AAA domain D934_11220 PF13091 PLD-like domain D934_11230 PF13166 D934_11230 D934_11235 PF13166 D934_11235 D934_11255 PF02401 LytB protein D934_11260 PF01252 D934_11260 D934_11265 PF00133 tRNA synthetases class I (I, L, M and V) D934_11265 PF06827 Zinc finger found in FPG and IleRS D934_11265 PF08264 Anticodon-binding domain of tRNA D934_11270 PF01687 Riboflavin kinase D934_11270 PF06574 FAD synthetase D934_11275 PF03023 D934_11275 D934_11280 PF01649 Ribosomal protein S20 D934_11285 PF01018 GTP1/OBG D934_11285 PF01926 50S ribosome-binding GTPase D934_11290 PF01016 Ribosomal L27 protein D934_11295 PF00829 Ribosomal prokaryotic L21 protein D934_11300 PF00005 ABC transporter D934_11320 PF00117 Glutamine amidotransferase class-I D934_11320 PF00958 GMP synthase C terminal domain D934_11320 PF02540 NAD synthase D934_11325 PF00478 IMP dehydrogenase / GMP reductase domain D934_11325 PF00571 CBS domain D934_11330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D934_11330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D934_11335 PF00483 Nucleotidyl transferase D934_11340 PF02719 Polysaccharide biosynthesis protein D934_11340 PF13727 CoA-binding domain D934_11345 PF00953 Glycosyl transferase family 4 D934_11355 PF06305 D934_11355 D934_11360 PF00216 Bacterial DNA-binding protein D934_11365 PF00575 S1 RNA binding domain D934_11370 PF02224 Cytidylate kinase D934_11375 PF00444 Ribosomal protein L36 D934_11385 PF04371 Porphyromonas-type peptidyl-arginine deiminase D934_11390 PF00795 Carbon-nitrogen hydrolase D934_11395 PF01963 D934_11395 D934_11400 PF00754 F5/8 type C domain D934_11400 PF06202 Amylo-alpha-1,6-glucosidase D934_11405 PF00528 Binding-protein-dependent transport system inner membrane component D934_11410 PF00528 Binding-protein-dependent transport system inner membrane component D934_11415 PF13416 Bacterial extracellular solute-binding protein D934_11420 PF10091 Putative glucoamylase D934_11425 PF01722 BolA-like protein D934_11430 PF02616 ScpA/B protein D934_11435 PF04079 Putative transcriptional regulators (Ypuh-like) D934_11440 PF00849 RNA pseudouridylate synthase D934_11440 PF01479 S4 domain D934_11450 PF00795 Carbon-nitrogen hydrolase D934_11455 PF00155 Aminotransferase class I and II D934_11460 PF00005 ABC transporter D934_11465 PF03379 D934_11465 D934_11470 PF01578 D934_11470 D934_11475 PF04995 D934_11475 D934_11480 PF03100 CcmE D934_11485 PF01578 D934_11485 D934_11485 PF16327 D934_11485 D934_11490 PF08534 Redoxin D934_11495 PF03918 Cytochrome C biogenesis protein D934_11500 PF07719 Tetratricopeptide repeat D934_11500 PF13432 Tetratricopeptide repeat D934_11510 PF00561 alpha/beta hydrolase fold D934_11515 PF00295 Glycosyl hydrolases family 28 D934_11525 PF13419 Haloacid dehalogenase-like hydrolase D934_11530 PF13489 Methyltransferase domain D934_11535 PF01979 Amidohydrolase family D934_11540 PF01132 Elongation factor P (EF-P) OB domain D934_11540 PF08207 Elongation factor P (EF-P) KOW-like domain D934_11540 PF09285 Elongation factor P, C-terminal D934_11545 PF13394 4Fe-4S single cluster domain D934_11550 PF00588 SpoU rRNA Methylase family D934_11555 PF00459 Inositol monophosphatase family D934_11560 PF13500 AAA domain D934_11575 PF07238 PilZ domain D934_11580 PF13177 DNA polymerase III, delta subunit D934_11585 PF02618 YceG-like family D934_11590 PF00425 chorismate binding enzyme D934_11590 PF04715 Anthranilate synthase component I, N terminal region D934_11595 PF00109 Beta-ketoacyl synthase, N-terminal domain D934_11595 PF02801 Beta-ketoacyl synthase, C-terminal domain D934_11600 PF00550 Phosphopantetheine attachment site D934_11605 PF13561 Enoyl-(Acyl carrier protein) reductase D934_11610 PF00698 Acyl transferase domain D934_11615 PF00456 Transketolase, thiamine diphosphate binding domain D934_11620 PF00353 Hemolysin-type calcium-binding repeat (2 copies) D934_11620 PF06594 D934_11620 D934_11655 PF00348 Polyprenyl synthetase D934_11660 PF02609 Exonuclease VII small subunit D934_11665 PF01171 PP-loop family D934_11665 PF09179 TilS substrate binding domain D934_11665 PF11734 TilS substrate C-terminal domain D934_11675 PF00245 Alkaline phosphatase D934_11680 PF00375 Sodium:dicarboxylate symporter family D934_11690 PF00877 NlpC/P60 family D934_11695 PF00877 NlpC/P60 family D934_11700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_11705 PF04235 D934_11705 D934_11715 PF01694 Rhomboid family D934_11725 PF00633 Helix-hairpin-helix motif D934_11725 PF00730 HhH-GPD superfamily base excision DNA repair protein D934_11725 PF10576 Iron-sulfur binding domain of endonuclease III D934_11735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D934_11735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D934_11750 PF10083 D934_11750 D934_11755 PF10137 D934_11755 D934_11770 PF01488 Shikimate / quinate 5-dehydrogenase D934_11770 PF08501 Shikimate dehydrogenase substrate binding domain D934_11785 PF08543 Phosphomethylpyrimidine kinase D934_11790 PF11412 Disulphide bond corrector protein DsbC D934_11790 PF13899 Thioredoxin-like D934_11795 PF03091 CutA1 divalent ion tolerance protein D934_11800 PF00166 Chaperonin 10 Kd subunit D934_11805 PF00118 TCP-1/cpn60 chaperonin family D934_11825 PF00535 Glycosyl transferase family 2 D934_11835 PF16363 D934_11835 D934_11840 PF16363 D934_11840 D934_11845 PF00534 Glycosyl transferases group 1 D934_11845 PF13439 Glycosyltransferase Family 4 D934_11850 PF05050 Methyltransferase FkbM domain D934_11855 PF00291 Pyridoxal-phosphate dependent enzyme D934_11855 PF00571 CBS domain D934_11860 PF04325 Protein of unknown function (DUF465) D934_11870 PF14346 Domain of unknown function (DUF4398) D934_11875 PF00593 TonB dependent receptor D934_11875 PF07715 TonB-dependent Receptor Plug Domain D934_11880 PF13640 2OG-Fe(II) oxygenase superfamily D934_11885 PF16357 D934_11885 D934_11890 PF10029 D934_11890 D934_11895 PF10670 D934_11895 D934_11900 PF02424 ApbE family D934_11910 PF12836 Helix-hairpin-helix motif D934_11920 PF01636 Phosphotransferase enzyme family D934_11925 PF00483 Nucleotidyl transferase D934_11930 PF01695 IstB-like ATP binding protein D934_11935 PF01594 D934_11935 D934_11940 PF09839 D934_11940 D934_11945 PF00586 AIR synthase related protein, N-terminal domain D934_11945 PF02769 AIR synthase related protein, C-terminal domain D934_11950 PF00551 Formyl transferase D934_11955 PF11306 Protein of unknown function (DUF3108) D934_11960 PF11306 Protein of unknown function (DUF3108) D934_11970 PF02223 Thymidylate kinase D934_11980 PF01431 Peptidase family M13 D934_11980 PF05649 Peptidase family M13 D934_11985 PF07977 FabA-like domain D934_11995 PF01171 PP-loop family D934_12000 PF04381 Putative exonuclease, RdgC D934_12005 PF01863 Protein of unknown function DUF45 D934_12010 PF00762 Ferrochelatase D934_12015 PF04366 D934_12015 D934_12020 PF02416 mttA/Hcf106 family D934_12030 PF00902 Sec-independent protein translocase protein (TatC) D934_12045 PF00117 Glutamine amidotransferase class-I D934_12060 PF00127 Copper binding proteins, plastocyanin/azurin family D934_12065 PF03193 Protein of unknown function, DUF258 D934_12075 PF02021 Uncharacterised protein family UPF0102 D934_12080 PF04348 LppC putative lipoprotein D934_12085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D934_12090 PF00593 TonB dependent receptor D934_12090 PF07715 TonB-dependent Receptor Plug Domain D934_12095 PF01588 Putative tRNA binding domain D934_12095 PF09334 tRNA synthetases class I (M) D934_12100 PF04060 Putative Fe-S cluster D934_12100 PF14697 4Fe-4S dicluster domain D934_12135 PF05136 D934_12135 D934_12145 PF05876 D934_12145 D934_12160 PF05272 D934_12160 D934_12165 PF01807 CHC2 zinc finger D934_12185 PF15943 D934_12185 D934_12225 PF07603 D934_12225 D934_12250 PF00114 Pilin (bacterial filament) D934_12265 PF00436 Single-strand binding protein family D934_12290 PF13274 D934_12290 D934_12305 PF07484 Phage Tail Collar Domain D934_12310 PF11041 D934_12310 D934_12315 PF04865 D934_12315 D934_12320 PF05973 D934_12320 D934_12325 PF01381 Helix-turn-helix D934_12355 PF05973 D934_12355 D934_12360 PF13744 Helix-turn-helix domain D934_12375 PF05973 D934_12375 D934_12390 PF10876 D934_12390 D934_12395 PF11681 D934_12395 D934_12400 PF11863 D934_12400 D934_12405 PF01385 D934_12405 D934_12405 PF07282 D934_12405 D934_12410 PF12323 D934_12410 D934_12420 PF00239 Resolvase, N terminal domain D934_12430 PF08774 VRR-NUC domain D934_12445 PF00176 SNF2 family N-terminal domain D934_12450 PF13986 D934_12450 D934_12455 PF00589 Phage integrase family D934_12460 PF00005 ABC transporter D934_12460 PF12848 ABC transporter D934_12465 PF00593 TonB dependent receptor D934_12465 PF07715 TonB-dependent Receptor Plug Domain D934_12470 PF01323 DSBA-like thioredoxin domain D934_12475 PF01323 DSBA-like thioredoxin domain D934_12480 PF00593 TonB dependent receptor D934_12480 PF07715 TonB-dependent Receptor Plug Domain D934_12485 PF00999 Sodium/hydrogen exchanger family D934_12485 PF02254 TrkA-N domain D934_12490 PF12849 PBP superfamily domain D934_12495 PF00528 Binding-protein-dependent transport system inner membrane component D934_12500 PF00528 Binding-protein-dependent transport system inner membrane component D934_12505 PF00005 ABC transporter D934_12515 PF00929 Exonuclease D934_12520 PF00398 Ribosomal RNA adenine dimethylase D934_12525 PF04379 Protein of unknown function (DUF525) D934_12530 PF00149 Calcineurin-like phosphoesterase D934_12535 PF03583 Secretory lipase D934_12540 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family D934_12545 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D934_12560 PF13672 Protein phosphatase 2C D934_12565 PF00929 Exonuclease D934_12570 PF00075 RNase H D934_12580 PF00753 Metallo-beta-lactamase superfamily D934_12580 PF16123 D934_12580 D934_12585 PF00575 S1 RNA binding domain D934_12585 PF09371 Tex-like protein N-terminal domain D934_12585 PF12836 Helix-hairpin-helix motif D934_12585 PF16921 D934_12585 D934_12590 PF14559 Tetratricopeptide repeat D934_12595 PF01161 Phosphatidylethanolamine-binding protein D934_12600 PF00719 Inorganic pyrophosphatase D934_12610 PF00085 Thioredoxin D934_12610 PF14559 Tetratricopeptide repeat D934_12610 PF14561 Tetratricopeptide repeat D934_12615 PF06197 D934_12615 D934_12620 PF00133 tRNA synthetases class I (I, L, M and V) D934_12620 PF08264 Anticodon-binding domain of tRNA D934_12620 PF09334 tRNA synthetases class I (M) D934_12620 PF13603 Leucyl-tRNA synthetase, Domain 2 D934_12630 PF06144 DNA polymerase III, delta subunit D934_12635 PF01467 Cytidylyltransferase D934_12640 PF02410 Oligomerisation domain D934_12655 PF13406 Transglycosylase SLT domain D934_12660 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel D934_12660 PF05036 Sporulation related domain D934_12665 PF01694 Rhomboid family D934_12670 PF04591 Protein of unknown function, DUF596 D934_12685 PF04591 Protein of unknown function, DUF596 D934_12695 PF04830 D934_12695 D934_12710 PF04591 Protein of unknown function, DUF596 D934_12720 PF04591 Protein of unknown function, DUF596 D934_12725 PF05590 D934_12725 D934_12725 PF13332 D934_12725 D934_12795 PF05594 D934_12795 D934_12795 PF05860 haemagglutination activity domain D934_12795 PF13018 D934_12795 D934_12805 PF00534 Glycosyl transferases group 1 D934_12805 PF13439 Glycosyltransferase Family 4 D934_12815 PF13692 Glycosyl transferases group 1 D934_12820 PF00905 Penicillin binding protein transpeptidase domain D934_12820 PF00912 Transglycosylase D934_12820 PF14814 Bifunctional transglycosylase second domain D934_12830 PF13307 Helicase C-terminal domain D934_12840 PF02557 D-alanyl-D-alanine carboxypeptidase D934_12845 PF00484 Carbonic anhydrase D934_12850 PF13439 Glycosyltransferase Family 4 D934_12850 PF13692 Glycosyl transferases group 1 D934_12855 PF01522 Polysaccharide deacetylase D934_12860 PF00005 ABC transporter D934_12860 PF09383 NIL domain D934_12865 PF00528 Binding-protein-dependent transport system inner membrane component D934_12870 PF03180 NLPA lipoprotein D934_12875 PF03922 OmpW family D934_12880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D934_12880 PF00364 Biotin-requiring enzyme D934_12880 PF02817 e3 binding domain D934_12885 PF00364 Biotin-requiring enzyme D934_12885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D934_12885 PF07992 Pyridine nucleotide-disulphide oxidoreductase D934_12895 PF01545 Cation efflux family D934_12900 PF01053 Cys/Met metabolism PLP-dependent enzyme D934_12905 PF00561 alpha/beta hydrolase fold D934_12910 PF01551 Peptidase family M23 D934_12920 PF01975 Survival protein SurE D934_12925 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) D934_12930 PF09335 D934_12930 D934_12935 PF01476 LysM domain D934_12935 PF01551 Peptidase family M23 D934_12950 PF00512 His Kinase A (phospho-acceptor) domain D934_12950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_12950 PF08448 PAS fold D934_12960 PF00842 Alanine racemase, C-terminal domain D934_12960 PF01168 Alanine racemase, N-terminal domain D934_12965 PF01266 FAD dependent oxidoreductase D934_12970 PF01641 SelR domain D934_12975 PF00704 Glycosyl hydrolases family 18 D934_12980 PF00728 Glycosyl hydrolase family 20, catalytic domain D934_12980 PF02838 Glycosyl hydrolase family 20, domain 2 D934_12980 PF13290 D934_12980 D934_12985 PF00703 Glycosyl hydrolases family 2 D934_12990 PF00933 Glycosyl hydrolase family 3 N terminal domain D934_12990 PF01915 Glycosyl hydrolase family 3 C-terminal domain D934_12990 PF07691 PA14 domain D934_12990 PF14310 Fibronectin type III-like domain D934_13000 PF06824 Protein of unknown function (DUF1237) D934_13005 PF07971 Glycosyl hydrolase family 92 D934_13010 PF01301 Glycosyl hydrolases family 35 D934_13015 PF04166 Pyridoxal phosphate biosynthetic protein PdxA D934_13020 PF00639 PPIC-type PPIASE domain D934_13020 PF09312 SurA N-terminal domain D934_13025 PF03968 OstA-like protein D934_13025 PF04453 Organic solvent tolerance protein D934_13030 PF01494 FAD binding domain D934_13035 PF01494 FAD binding domain D934_13040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D934_13040 PF03466 LysR substrate binding domain D934_13045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D934_13045 PF10414 Sirohaem synthase dimerisation region D934_13045 PF13241 Putative NAD(P)-binding D934_13045 PF14824 Sirohaem biosynthesis protein central D934_13050 PF00291 Pyridoxal-phosphate dependent enzyme D934_13070 PF00274 Fructose-bisphosphate aldolase class-I D934_13075 PF00224 Pyruvate kinase, barrel domain D934_13075 PF02887 Pyruvate kinase, alpha/beta domain D934_13080 PF00162 Phosphoglycerate kinase D934_13085 PF00749 tRNA synthetases class I (E and Q), catalytic domain D934_13090 PF01475 Ferric uptake regulator family D934_13095 PF02225 PA domain D934_13095 PF04389 Peptidase family M28 D934_13100 PF00150 Cellulase (glycosyl hydrolase family 5) D934_13100 PF00553 Cellulose binding domain D934_13110 PF00675 Insulinase (Peptidase family M16) D934_13110 PF05193 Peptidase M16 inactive domain D934_13115 PF09849 D934_13115 D934_13120 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D934_13125 PF00150 Cellulase (glycosyl hydrolase family 5) D934_13130 PF01043 SecA preprotein cross-linking domain D934_13130 PF02810 SEC-C motif D934_13130 PF07516 SecA Wing and Scaffold domain D934_13130 PF07517 SecA DEAD-like domain D934_13135 PF01551 Peptidase family M23 D934_13140 PF05258 D934_13140 D934_13145 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D934_13150 PF00091 Tubulin/FtsZ family, GTPase domain D934_13150 PF12327 FtsZ family, C-terminal domain D934_13155 PF02491 SHS2 domain inserted in FTSA D934_13155 PF14450 Cell division protein FtsA D934_13160 PF03799 Cell division protein FtsQ D934_13160 PF08478 POTRA domain, FtsQ-type D934_13165 PF01820 D-ala D-ala ligase N-terminus D934_13165 PF07478 D-ala D-ala ligase C-terminus D934_13170 PF01225 Mur ligase family, catalytic domain D934_13170 PF02875 Mur ligase family, glutamate ligase domain D934_13170 PF08245 Mur ligase middle domain D934_13175 PF03033 Glycosyltransferase family 28 N-terminal domain D934_13175 PF04101 Glycosyltransferase family 28 C-terminal domain D934_13180 PF01098 D934_13180 D934_13185 PF00953 Glycosyl transferase family 4 D934_13190 PF01225 Mur ligase family, catalytic domain D934_13190 PF02875 Mur ligase family, glutamate ligase domain D934_13190 PF08245 Mur ligase middle domain D934_13195 PF01225 Mur ligase family, catalytic domain D934_13195 PF02875 Mur ligase family, glutamate ligase domain D934_13195 PF08245 Mur ligase middle domain D934_13200 PF00905 Penicillin binding protein transpeptidase domain D934_13200 PF03717 Penicillin-binding Protein dimerisation domain D934_13205 PF04999 D934_13205 D934_13210 PF01795 MraW methylase family D934_13215 PF02381 MraZ protein D934_13220 PF02080 TrkA-C domain D934_13220 PF03600 Citrate transporter D934_13225 PF02390 Putative methyltransferase D934_13230 PF05690 Thiazole biosynthesis protein ThiG D934_13235 PF02597 ThiS family D934_13240 PF00657 GDSL-like Lipase/Acylhydrolase D934_13240 PF03797 Autotransporter beta-domain D934_13255 PF03176 MMPL family D934_13265 PF03279 D934_13265 D934_13285 PF00550 Phosphopantetheine attachment site D934_13295 PF00753 Metallo-beta-lactamase superfamily D934_13295 PF04273 Putative phosphatase (DUF442) D934_13300 PF12840 Helix-turn-helix domain D934_13305 PF04143 D934_13305 D934_13315 PF01925 D934_13315 D934_13320 PF00692 dUTPase D934_13325 PF07920 Protein of unknown function (DUF1684) D934_13330 PF01119 DNA mismatch repair protein, C-terminal domain D934_13330 PF08676 MutL C terminal dimerisation domain D934_13330 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13335 PF01520 N-acetylmuramoyl-L-alanine amidase D934_13335 PF11741 AMIN domain D934_13340 PF02367 Uncharacterised P-loop hydrolase UPF0079 D934_13345 PF01256 Carbohydrate kinase D934_13345 PF03853 YjeF-related protein N-terminus D934_13350 PF02601 D934_13350 D934_13350 PF13742 D934_13350 D934_13360 PF03781 Sulfatase-modifying factor enzyme 1 D934_13365 PF01612 3'-5' exonuclease D934_13370 PF00816 H-NS histone family D934_13375 PF01728 FtsJ-like methyltransferase D934_13390 PF13411 MerR HTH family regulatory protein D934_13395 PF00216 Bacterial DNA-binding protein D934_13400 PF01588 Putative tRNA binding domain D934_13400 PF03147 Ferredoxin-fold anticodon binding domain D934_13400 PF03483 B3/4 domain D934_13400 PF03484 tRNA synthetase B5 domain D934_13405 PF01409 tRNA synthetases class II core domain (F) D934_13405 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D934_13410 PF00453 Ribosomal protein L20 D934_13415 PF01632 Ribosomal protein L35 D934_13420 PF00707 Translation initiation factor IF-3, C-terminal domain D934_13420 PF05198 Translation initiation factor IF-3, N-terminal domain D934_13425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D934_13425 PF02824 TGS domain D934_13425 PF03129 Anticodon binding domain D934_13425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D934_13440 PF08443 RimK-like ATP-grasp domain D934_13445 PF00072 Response regulator receiver domain D934_13445 PF00486 Transcriptional regulatory protein, C terminal D934_13450 PF00512 His Kinase A (phospho-acceptor) domain D934_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13455 PF01121 Dephospho-CoA kinase D934_13460 PF01478 Type IV leader peptidase family D934_13460 PF06750 D934_13460 D934_13465 PF00482 Type II secretion system (T2SS), protein F D934_13470 PF00114 Pilin (bacterial filament) D934_13470 PF07963 Prokaryotic N-terminal methylation motif D934_13485 PF00114 Pilin (bacterial filament) D934_13485 PF07963 Prokaryotic N-terminal methylation motif D934_13490 PF00437 Type II/IV secretion system protein D934_13490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D934_13495 PF00072 Response regulator receiver domain D934_13495 PF00158 Sigma-54 interaction domain D934_13495 PF02954 Bacterial regulatory protein, Fis family D934_13500 PF00512 His Kinase A (phospho-acceptor) domain D934_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13505 PF00549 CoA-ligase D934_13505 PF08442 ATP-grasp domain D934_13510 PF00549 CoA-ligase D934_13510 PF02629 CoA binding domain D934_13520 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D934_13520 PF08479 POTRA domain, ShlB-type D934_13520 PF17287 D934_13520 D934_13525 PF00326 Prolyl oligopeptidase family D934_13535 PF00521 DNA gyrase/topoisomerase IV, subunit A D934_13535 PF03989 DNA gyrase C-terminal domain, beta-propeller D934_13540 PF01008 Initiation factor 2 subunit family D934_13545 PF11218 D934_13545 D934_13550 PF00152 tRNA synthetases class II (D, K and N) D934_13555 PF00583 Acetyltransferase (GNAT) family D934_13560 PF00533 BRCA1 C Terminus (BRCT) domain D934_13560 PF01653 NAD-dependent DNA ligase adenylation domain D934_13560 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D934_13560 PF03120 NAD-dependent DNA ligase OB-fold domain D934_13560 PF12826 Helix-hairpin-helix motif D934_13570 PF04354 ZipA, C-terminal FtsZ-binding domain D934_13575 PF02463 RecF/RecN/SMC N terminal domain D934_13575 PF06470 SMC proteins Flexible Hinge Domain D934_13580 PF01281 Ribosomal protein L9, N-terminal domain D934_13580 PF03948 Ribosomal protein L9, C-terminal domain D934_13585 PF01084 Ribosomal protein S18 D934_13590 PF01250 Ribosomal protein S6 D934_13595 PF01521 Iron-sulphur cluster biosynthesis D934_13600 PF00152 tRNA synthetases class II (D, K and N) D934_13600 PF01336 OB-fold nucleic acid binding domain D934_13605 PF01061 D934_13605 D934_13610 PF00005 ABC transporter D934_13620 PF13828 D934_13620 D934_13625 PF01180 Dihydroorotate dehydrogenase D934_13630 PF01565 FAD binding domain D934_13630 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D934_13635 PF00892 EamA-like transporter family D934_13640 PF01569 PAP2 superfamily D934_13645 PF04551 GcpE protein D934_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D934_13655 PF00072 Response regulator receiver domain D934_13655 PF02954 Bacterial regulatory protein, Fis family D934_13660 PF00889 Elongation factor TS D934_13665 PF00318 Ribosomal protein S2 D934_13675 PF00005 ABC transporter D934_13675 PF00664 ABC transporter transmembrane region D934_13690 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) D934_13730 PF13828 D934_13730 D934_13735 PF03432 D934_13735 D934_13740 PF02452 PemK-like protein D934_13750 PF01385 D934_13750 D934_13750 PF07282 D934_13750 D934_13750 PF12323 D934_13750 D934_13755 PF04221 RelB antitoxin D934_13760 PF15738 D934_13760 D934_13765 PF11657 D934_13765 D934_13770 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D934_13780 PF05713 D934_13780 D934_13790 PF01385 D934_13790 D934_13790 PF07282 D934_13790 D934_13790 PF12323 D934_13790 D934_13795 PF01797 Transposase IS200 like D934_13800 PF11455 D934_13800 D934_13805 PF04796 D934_13805 D934_13810 PF00239 Resolvase, N terminal domain D934_13810 PF02796 Helix-turn-helix domain of resolvase D934_13815 PF01850 PIN domain D934_13820 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D934_13825 PF00239 Resolvase, N terminal domain D934_13835 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D934_13855 PF05973 D934_13855 D934_13860 PF13744 Helix-turn-helix domain D934_13885 PF04956 D934_13885 D934_13890 PF05101 D934_13890 D934_13895 PF03135 D934_13895 D934_13900 PF07996 Type IV secretion system proteins D934_13905 PF04610 D934_13905 D934_13910 PF04335 VirB8 protein D934_13915 PF03524 Conjugal transfer protein D934_13920 PF03743 Bacterial conjugation TrbI-like protein D934_13925 PF00437 Type II/IV secretion system protein