locus-tag class description LPH57_00010 PF10459 Peptidase S46 LPH57_00015 PF13667 ThiC-associated domain LPH57_00015 PF01964 Radical SAM ThiC family LPH57_00020 PF00970 Oxidoreductase FAD-binding domain LPH57_00020 PF00175 Oxidoreductase NAD-binding domain LPH57_00025 PF00255 Glutathione peroxidase LPH57_00030 PF00854 POT family LPH57_00035 PF04493 Endonuclease V LPH57_00040 PF00300 Histidine phosphatase superfamily (branch 1) LPH57_00045 PF04055 Radical SAM superfamily LPH57_00055 PF00691 OmpA family LPH57_00060 PF04052 TolB amino-terminal domain LPH57_00060 PF07676 WD40-like Beta Propeller Repeat LPH57_00070 PF02472 Biopolymer transport protein ExbD/TolR LPH57_00075 PF01618 MotA/TolQ/ExbB proton channel family LPH57_00080 PF03061 Thioesterase superfamily LPH57_00085 PF17864 RuvB AAA lid domain LPH57_00085 PF05491 RuvB C-terminal winged helix domain LPH57_00085 PF05496 Holliday junction DNA helicase RuvB P-loop domain LPH57_00090 PF02705 K+ potassium transporter LPH57_00095 PF07499 RuvA, C-terminal domain LPH57_00095 PF01330 RuvA N terminal domain LPH57_00100 PF02075 Crossover junction endodeoxyribonuclease RuvC LPH57_00105 PF01709 Transcriptional regulator LPH57_00115 PF04362 Bacterial Fe(2+) trafficking LPH57_00120 PF14815 NUDIX domain LPH57_00120 PF00633 Helix-hairpin-helix motif LPH57_00120 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH57_00125 PF00448 SRP54-type protein, GTPase domain LPH57_00125 PF02881 SRP54-type protein, helical bundle domain LPH57_00150 PF01850 PIN domain LPH57_00225 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LPH57_00230 PF04221 RelB antitoxin LPH57_00305 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LPH57_00360 PF06508 Queuosine biosynthesis protein QueC LPH57_00365 PF01336 OB-fold nucleic acid binding domain LPH57_00365 PF02938 GAD domain LPH57_00365 PF00152 tRNA synthetases class II (D, K and N) LPH57_00385 PF05683 Fumarase C-terminus LPH57_00385 PF05681 Fumarate hydratase (Fumerase) LPH57_00405 PF01648 4'-phosphopantetheinyl transferase superfamily LPH57_00410 PF02527 rRNA small subunit methyltransferase G LPH57_00415 PF02779 Transketolase, pyrimidine binding domain LPH57_00415 PF02780 Transketolase, C-terminal domain LPH57_00415 PF00456 Transketolase, thiamine diphosphate binding domain LPH57_00420 PF00375 Sodium:dicarboxylate symporter family LPH57_00430 PF01625 Peptide methionine sulfoxide reductase LPH57_00445 PF01432 Peptidase family M3 LPH57_00450 PF06903 VirK protein LPH57_00455 PF08245 Mur ligase middle domain LPH57_00455 PF02875 Mur ligase family, glutamate ligase domain LPH57_00470 PF00156 Phosphoribosyl transferase domain LPH57_00480 PF00072 Response regulator receiver domain LPH57_00480 PF01339 CheB methylesterase LPH57_00485 PF01584 CheW-like domain LPH57_00485 PF02895 Signal transducing histidine kinase, homodimeric domain LPH57_00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_00485 PF01627 Hpt domain LPH57_00485 PF00072 Response regulator receiver domain LPH57_00490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPH57_00490 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LPH57_00495 PF01584 CheW-like domain LPH57_00500 PF00072 Response regulator receiver domain LPH57_00505 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LPH57_00505 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LPH57_00520 PF02092 Glycyl-tRNA synthetase beta subunit LPH57_00520 PF05746 DALR anticodon binding domain LPH57_00525 PF02091 Glycyl-tRNA synthetase alpha subunit LPH57_00530 PF00795 Carbon-nitrogen hydrolase LPH57_00530 PF02540 NAD synthase LPH57_00555 PF03692 Putative zinc- or iron-chelating domain LPH57_00565 PF00561 alpha/beta hydrolase fold LPH57_00575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH57_00575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH57_00585 PF00588 SpoU rRNA Methylase family LPH57_00595 PF01808 AICARFT/IMPCHase bienzyme LPH57_00595 PF02142 MGS-like domain LPH57_00600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LPH57_00600 PF02843 Phosphoribosylglycinamide synthetase, C domain LPH57_00600 PF02844 Phosphoribosylglycinamide synthetase, N domain LPH57_00620 PF12805 FUSC-like inner membrane protein yccS LPH57_00630 PF03186 CobD/Cbib protein LPH57_00635 PF03895 YadA-like membrane anchor domain LPH57_00635 PF05658 Head domain of trimeric autotransporter adhesin LPH57_00635 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH57_00640 PF01227 GTP cyclohydrolase I LPH57_00645 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_00650 PF00588 SpoU rRNA Methylase family LPH57_00650 PF08032 RNA 2'-O ribose methyltransferase substrate binding LPH57_00660 PF00575 S1 RNA binding domain LPH57_00660 PF00773 RNB domain LPH57_00660 PF08206 Ribonuclease B OB domain LPH57_00660 PF08461 Ribonuclease R winged-helix domain LPH57_00660 PF17876 Cold shock domain LPH57_00670 PF00959 Phage lysozyme LPH57_00740 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH57_00745 PF07690 Major Facilitator Superfamily LPH57_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_00750 PF03466 LysR substrate binding domain LPH57_00765 PF01161 Phosphatidylethanolamine-binding protein LPH57_00770 PF00719 Inorganic pyrophosphatase LPH57_00780 PF00085 Thioredoxin LPH57_00790 PF08264 Anticodon-binding domain of tRNA LPH57_00790 PF00133 tRNA synthetases class I (I, L, M and V) LPH57_00790 PF13603 Leucyl-tRNA synthetase, Domain 2 LPH57_00805 PF01467 Cytidylyltransferase-like LPH57_00820 PF13406 Transglycosylase SLT domain LPH57_00825 PF05036 Sporulation related domain LPH57_00825 PF03330 Lytic transglycolase LPH57_00930 PF13332 Hemagglutinin repeat LPH57_00930 PF05860 haemagglutination activity domain LPH57_00930 PF15605 Bacterial toxin 28 LPH57_00930 PF04829 Pre-toxin domain with VENN motif LPH57_00960 PF04829 Pre-toxin domain with VENN motif LPH57_00960 PF05860 haemagglutination activity domain LPH57_00960 PF13332 Hemagglutinin repeat LPH57_00965 PF13332 Hemagglutinin repeat LPH57_00965 PF05860 haemagglutination activity domain LPH57_00965 PF04829 Pre-toxin domain with VENN motif LPH57_00965 PF13018 Extended Signal Peptide of Type V secretion system LPH57_01060 PF15605 Bacterial toxin 28 LPH57_01060 PF04829 Pre-toxin domain with VENN motif LPH57_01060 PF04829 Pre-toxin domain with VENN motif LPH57_01060 PF15605 Bacterial toxin 28 LPH57_01060 PF05860 haemagglutination activity domain LPH57_01060 PF13332 Hemagglutinin repeat LPH57_01060 PF05860 haemagglutination activity domain LPH57_01060 PF13332 Hemagglutinin repeat LPH57_01065 PF04829 Pre-toxin domain with VENN motif LPH57_01065 PF13018 Extended Signal Peptide of Type V secretion system LPH57_01065 PF13332 Hemagglutinin repeat LPH57_01065 PF05860 haemagglutination activity domain LPH57_01085 PF01810 LysE type translocator LPH57_01105 PF01132 Elongation factor P (EF-P) OB domain LPH57_01105 PF09285 Elongation factor P, C-terminal LPH57_01105 PF08207 Elongation factor P (EF-P) KOW-like domain LPH57_01110 PF02913 FAD linked oxidases, C-terminal domain LPH57_01110 PF01565 FAD binding domain LPH57_01115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LPH57_01115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPH57_01115 PF01842 ACT domain LPH57_01120 PF13520 Amino acid permease LPH57_01125 PF13520 Amino acid permease LPH57_01130 PF00596 Class II Aldolase and Adducin N-terminal domain LPH57_01135 PF03079 ARD/ARD' family LPH57_01165 PF01502 Phosphoribosyl-AMP cyclohydrolase LPH57_01165 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LPH57_01170 PF00977 Histidine biosynthesis protein LPH57_01175 PF00977 Histidine biosynthesis protein LPH57_01180 PF00117 Glutamine amidotransferase class-I LPH57_01185 PF00475 Imidazoleglycerol-phosphate dehydratase LPH57_01190 PF00155 Aminotransferase class I and II LPH57_01195 PF00815 Histidinol dehydrogenase LPH57_01200 PF08029 HisG, C-terminal domain LPH57_01200 PF01634 ATP phosphoribosyltransferase LPH57_01215 PF13393 Histidyl-tRNA synthetase LPH57_01215 PF03129 Anticodon binding domain LPH57_01220 PF00291 Pyridoxal-phosphate dependent enzyme LPH57_01220 PF14821 Threonine synthase N terminus LPH57_01225 PF00288 GHMP kinases N terminal domain LPH57_01225 PF08544 GHMP kinases C terminal LPH57_01230 PF03447 Homoserine dehydrogenase, NAD binding domain LPH57_01230 PF00742 Homoserine dehydrogenase LPH57_01230 PF13840 ACT domain LPH57_01230 PF01842 ACT domain LPH57_01230 PF00696 Amino acid kinase family LPH57_01240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH57_01240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH57_01245 PF03652 Holliday junction resolvase LPH57_01250 PF02622 Uncharacterized ACR, COG1678 LPH57_01255 PF00768 D-alanyl-D-alanine carboxypeptidase LPH57_01255 PF07943 Penicillin-binding protein 5, C-terminal domain LPH57_01260 PF00141 Peroxidase LPH57_01265 PF00226 DnaJ domain LPH57_01265 PF01556 DnaJ C terminal domain LPH57_01275 PF00905 Penicillin binding protein transpeptidase domain LPH57_01275 PF00912 Transglycosylase LPH57_01275 PF06832 Penicillin-Binding Protein C-terminus Family LPH57_01280 PF00593 TonB dependent receptor LPH57_01280 PF07715 TonB-dependent Receptor Plug Domain LPH57_01300 PF08281 Sigma-70, region 4 LPH57_01300 PF04542 Sigma-70 region 2 LPH57_01310 PF13180 PDZ domain LPH57_01315 PF00679 Elongation factor G C-terminus LPH57_01315 PF03144 Elongation factor Tu domain 2 LPH57_01315 PF06421 GTP-binding protein LepA C-terminus LPH57_01315 PF00009 Elongation factor Tu GTP binding domain LPH57_01320 PF10502 Signal peptidase, peptidase S26 LPH57_01330 PF14622 Ribonuclease-III-like LPH57_01330 PF00035 Double-stranded RNA binding motif LPH57_01335 PF07650 KH domain LPH57_01335 PF01926 50S ribosome-binding GTPase LPH57_01340 PF11967 Recombination protein O N terminal LPH57_01340 PF02565 Recombination protein O C terminal LPH57_01345 PF02779 Transketolase, pyrimidine binding domain LPH57_01345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LPH57_01345 PF02780 Transketolase, C-terminal domain LPH57_01350 PF00474 Sodium:solute symporter family LPH57_01360 PF00501 AMP-binding enzyme LPH57_01360 PF13193 AMP-binding enzyme C-terminal domain LPH57_01360 PF16177 Acetyl-coenzyme A synthetase N-terminus LPH57_01365 PF02659 Putative manganese efflux pump LPH57_01370 PF00106 short chain dehydrogenase LPH57_01385 PF13360 PQQ-like domain LPH57_01390 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPH57_01390 PF07676 WD40-like Beta Propeller Repeat LPH57_01390 PF00326 Prolyl oligopeptidase family LPH57_01395 PF03169 OPT oligopeptide transporter protein LPH57_01400 PF01266 FAD dependent oxidoreductase LPH57_01400 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LPH57_01405 PF00230 Major intrinsic protein LPH57_01410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPH57_01410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPH57_01425 PF08267 Cobalamin-independent synthase, N-terminal domain LPH57_01425 PF01717 Cobalamin-independent synthase, Catalytic domain LPH57_01430 PF02677 Epoxyqueuosine reductase QueH LPH57_01440 PF00501 AMP-binding enzyme LPH57_01450 PF00535 Glycosyl transferase family 2 LPH57_01455 PF01370 NAD dependent epimerase/dehydratase family LPH57_01460 PF02195 ParB-like nuclease domain LPH57_01460 PF17762 HTH domain found in ParB protein LPH57_01465 PF13614 AAA domain LPH57_01480 PF02403 Seryl-tRNA synthetase N-terminal domain LPH57_01480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH57_01485 PF03544 Gram-negative bacterial TonB protein C-terminal LPH57_01490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH57_01495 PF01842 ACT domain LPH57_01495 PF01817 Chorismate mutase type II LPH57_01495 PF00800 Prephenate dehydratase LPH57_01500 PF00266 Aminotransferase class-V LPH57_01510 PF12679 ABC-2 family transporter protein LPH57_01515 PF00005 ABC transporter LPH57_01545 PF00440 Bacterial regulatory proteins, tetR family LPH57_01550 PF01209 ubiE/COQ5 methyltransferase family LPH57_01560 PF00294 pfkB family carbohydrate kinase LPH57_01565 PF07690 Major Facilitator Superfamily LPH57_01575 PF04102 SlyX LPH57_01580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH57_01580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH57_01580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH57_01585 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH57_01585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH57_01590 PF00255 Glutathione peroxidase LPH57_01600 PF00005 ABC transporter LPH57_01615 PF10415 Fumarase C C-terminus LPH57_01615 PF00206 Lyase LPH57_01625 PF08328 Adenylosuccinate lyase C-terminal LPH57_01625 PF00206 Lyase LPH57_01630 PF08007 Cupin superfamily protein LPH57_01635 PF16078 2-oxoglutarate dehydrogenase N-terminus LPH57_01635 PF16870 2-oxoglutarate dehydrogenase C-terminal LPH57_01635 PF02779 Transketolase, pyrimidine binding domain LPH57_01635 PF00676 Dehydrogenase E1 component LPH57_01640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH57_01640 PF00364 Biotin-requiring enzyme LPH57_01640 PF02817 e3 binding domain LPH57_01645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH57_01645 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH57_01655 PF00899 ThiF family LPH57_01670 PF00325 Bacterial regulatory proteins, crp family LPH57_01670 PF00027 Cyclic nucleotide-binding domain LPH57_01675 PF02675 S-adenosylmethionine decarboxylase LPH57_01680 PF03232 Ubiquinone biosynthesis protein COQ7 LPH57_01685 PF00572 Ribosomal protein L13 LPH57_01690 PF00380 Ribosomal protein S9/S16 LPH57_01695 PF00285 Citrate synthase, C-terminal domain LPH57_01700 PF01197 Ribosomal protein L31 LPH57_01705 PF00814 Glycoprotease family LPH57_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_01710 PF03466 LysR substrate binding domain LPH57_01715 PF13192 Thioredoxin domain LPH57_01715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH57_01720 PF10417 C-terminal domain of 1-Cys peroxiredoxin LPH57_01720 PF00578 AhpC/TSA family LPH57_01725 PF05658 Head domain of trimeric autotransporter adhesin LPH57_01725 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH57_01725 PF03895 YadA-like membrane anchor domain LPH57_01725 PF13018 Extended Signal Peptide of Type V secretion system LPH57_01730 PF03958 Bacterial type II/III secretion system short domain LPH57_01730 PF00263 Bacterial type II and III secretion system protein LPH57_01740 PF10741 Type II secretion system (T2SS), protein M subtype b LPH57_01745 PF05137 Fimbrial assembly protein (PilN) LPH57_01750 PF03934 Type II secretion system (T2SS), protein K LPH57_01760 PF03934 Type II secretion system (T2SS), protein K LPH57_01770 PF07963 Prokaryotic N-terminal methylation motif LPH57_01775 PF12019 Type II transport protein GspH LPH57_01780 PF08334 Type II secretion system (T2SS), protein G LPH57_01785 PF00482 Type II secretion system (T2SS), protein F LPH57_01790 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH57_01790 PF00437 Type II/IV secretion system protein LPH57_01810 PF05175 Methyltransferase small domain LPH57_01810 PF17827 PrmC N-terminal domain LPH57_01820 PF00561 alpha/beta hydrolase fold LPH57_01835 PF06969 HemN C-terminal domain LPH57_01835 PF04055 Radical SAM superfamily LPH57_01840 PF01725 Ham1 family LPH57_01845 PF01138 3' exoribonuclease family, domain 1 LPH57_01845 PF03725 3' exoribonuclease family, domain 2 LPH57_01850 PF08340 Domain of unknown function (DUF1732) LPH57_01850 PF03755 YicC-like family, N-terminal region LPH57_01855 PF00625 Guanylate kinase LPH57_01860 PF01192 RNA polymerase Rpb6 LPH57_01865 PF00009 Elongation factor Tu GTP binding domain LPH57_01870 PF01507 Phosphoadenosine phosphosulfate reductase family LPH57_01875 PF00667 FAD binding domain LPH57_01875 PF00258 Flavodoxin LPH57_01875 PF00175 Oxidoreductase NAD-binding domain LPH57_01880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LPH57_01880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LPH57_01885 PF01507 Phosphoadenosine phosphosulfate reductase family LPH57_01910 PF13369 Transglutaminase-like superfamily LPH57_01940 PF01433 Peptidase family M1 domain LPH57_01940 PF11838 ERAP1-like C-terminal domain LPH57_01945 PF01209 ubiE/COQ5 methyltransferase family LPH57_01955 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_01955 PF07724 AAA domain (Cdc48 subfamily) LPH57_01955 PF10431 C-terminal, D2-small domain, of ClpB protein LPH57_01960 PF00227 Proteasome subunit LPH57_01970 PF02899 Phage integrase, N-terminal SAM-like domain LPH57_01970 PF00589 Phage integrase family LPH57_01980 PF01678 Diaminopimelate epimerase LPH57_01990 PF00326 Prolyl oligopeptidase family LPH57_01990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LPH57_02000 PF02082 Transcriptional regulator LPH57_02005 PF01458 Uncharacterized protein family (UPF0051) LPH57_02010 PF00005 ABC transporter LPH57_02015 PF01458 Uncharacterized protein family (UPF0051) LPH57_02020 PF00266 Aminotransferase class-V LPH57_02025 PF00355 Rieske [2Fe-2S] domain LPH57_02030 PF13439 Glycosyltransferase Family 4 LPH57_02030 PF00534 Glycosyl transferases group 1 LPH57_02035 PF01522 Polysaccharide deacetylase LPH57_02040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH57_02040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH57_02040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH57_02040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH57_02045 PF17848 Acetyl-coA carboxylase zinc finger domain LPH57_02045 PF01039 Carboxyl transferase domain LPH57_02070 PF01979 Amidohydrolase family LPH57_02075 PF01380 SIS domain LPH57_02085 PF07690 Major Facilitator Superfamily LPH57_02095 PF02685 Glucokinase LPH57_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_02120 PF00512 His Kinase A (phospho-acceptor) domain LPH57_02135 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LPH57_02140 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_02140 PF16193 AAA C-terminal domain LPH57_02140 PF12002 MgsA AAA+ ATPase C terminal LPH57_02145 PF03548 Outer membrane lipoprotein carrier protein LolA LPH57_02160 PF09397 Ftsk gamma domain LPH57_02160 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LPH57_02160 PF01580 FtsK/SpoIIIE family LPH57_02160 PF17854 FtsK alpha domain LPH57_02165 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH57_02175 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LPH57_02180 PF01176 Translation initiation factor 1A / IF-1 LPH57_02185 PF07724 AAA domain (Cdc48 subfamily) LPH57_02185 PF17871 AAA lid domain LPH57_02185 PF02861 Clp amino terminal domain, pathogenicity island component LPH57_02185 PF10431 C-terminal, D2-small domain, of ClpB protein LPH57_02185 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_02190 PF02617 ATP-dependent Clp protease adaptor protein ClpS LPH57_02195 PF00293 NUDIX domain LPH57_02205 PF04356 Protein of unknown function (DUF489) LPH57_02220 PF01323 DSBA-like thioredoxin domain LPH57_02230 PF01926 50S ribosome-binding GTPase LPH57_02235 PF04107 Glutamate-cysteine ligase family 2(GCS2) LPH57_02245 PF00202 Aminotransferase class-III LPH57_02250 PF00520 Ion transport protein LPH57_02250 PF00027 Cyclic nucleotide-binding domain LPH57_02255 PF02899 Phage integrase, N-terminal SAM-like domain LPH57_02255 PF00589 Phage integrase family LPH57_02260 PF10411 Disulfide bond isomerase protein N-terminus LPH57_02260 PF13098 Thioredoxin-like domain LPH57_02265 PF02769 AIR synthase related protein, C-terminal domain LPH57_02265 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LPH57_02265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LPH57_02275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH57_02285 PF00571 CBS domain LPH57_02285 PF01380 SIS domain LPH57_02305 PF12399 Branched-chain amino acid ATP-binding cassette transporter LPH57_02305 PF00005 ABC transporter LPH57_02310 PF04552 Sigma-54, DNA binding domain LPH57_02310 PF04963 Sigma-54 factor, core binding domain LPH57_02310 PF00309 Sigma-54 factor, Activator interacting domain (AID) LPH57_02315 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LPH57_02320 PF02603 HPr Serine kinase N terminus LPH57_02320 PF07475 HPr Serine kinase C-terminal domain LPH57_02325 PF03668 P-loop ATPase protein family LPH57_02335 PF00381 PTS HPr component phosphorylation site LPH57_02340 PF02896 PEP-utilising enzyme, TIM barrel domain LPH57_02340 PF00391 PEP-utilising enzyme, mobile domain LPH57_02340 PF05524 PEP-utilising enzyme, N-terminal LPH57_02345 PF03448 MgtE intracellular N domain LPH57_02345 PF01769 Divalent cation transporter LPH57_02345 PF00571 CBS domain LPH57_02350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPH57_02385 PF04542 Sigma-70 region 2 LPH57_02385 PF08281 Sigma-70, region 4 LPH57_02395 PF00082 Subtilase family LPH57_02405 PF00436 Single-strand binding protein family LPH57_02410 PF00348 Polyprenyl synthetase LPH57_02415 PF06481 COX Aromatic Rich Motif LPH57_02415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LPH57_02420 PF00115 Cytochrome C and Quinol oxidase polypeptide I LPH57_02425 PF00510 Cytochrome c oxidase subunit III LPH57_02430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LPH57_02435 PF02347 Glycine cleavage system P-protein LPH57_02445 PF00271 Helicase conserved C-terminal domain LPH57_02445 PF04408 Helicase associated domain (HA2) LPH57_02445 PF11898 Domain of unknown function (DUF3418) LPH57_02445 PF00270 DEAD/DEAH box helicase LPH57_02445 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LPH57_02450 PF00210 Ferritin-like domain LPH57_02455 PF00271 Helicase conserved C-terminal domain LPH57_02455 PF00270 DEAD/DEAH box helicase LPH57_02455 PF16124 RecQ zinc-binding LPH57_02455 PF00570 HRDC domain LPH57_02455 PF09382 RQC domain LPH57_02475 PF00296 Luciferase-like monooxygenase LPH57_02480 PF18073 Rubredoxin metal binding domain LPH57_02495 PF00290 Tryptophan synthase alpha chain LPH57_02500 PF00291 Pyridoxal-phosphate dependent enzyme LPH57_02505 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LPH57_02510 PF01416 tRNA pseudouridine synthase LPH57_02520 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH57_02520 PF02774 Semialdehyde dehydrogenase, dimerisation domain LPH57_02530 PF01264 Chorismate synthase LPH57_02535 PF05175 Methyltransferase small domain LPH57_02550 PF06594 Haemolysin-type calcium binding protein related domain LPH57_02550 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH57_02605 PF00348 Polyprenyl synthetase LPH57_02610 PF02609 Exonuclease VII small subunit LPH57_02615 PF11734 TilS substrate C-terminal domain LPH57_02615 PF01171 PP-loop family LPH57_02615 PF09179 TilS substrate binding domain LPH57_02625 PF00375 Sodium:dicarboxylate symporter family LPH57_02630 PF00877 NlpC/P60 family LPH57_02635 PF00877 NlpC/P60 family LPH57_02640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH57_02645 PF04235 Protein of unknown function (DUF418) LPH57_02675 PF10576 Iron-sulfur binding domain of endonuclease III LPH57_02675 PF00633 Helix-hairpin-helix motif LPH57_02675 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH57_02690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH57_02690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH57_02695 PF00293 NUDIX domain LPH57_02720 PF01488 Shikimate / quinate 5-dehydrogenase LPH57_02720 PF08501 Shikimate dehydrogenase substrate binding domain LPH57_02720 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LPH57_02725 PF08543 Phosphomethylpyrimidine kinase LPH57_02725 PF02581 Thiamine monophosphate synthase LPH57_02745 PF11412 Disulphide bond corrector protein DsbC LPH57_02745 PF02683 Cytochrome C biogenesis protein transmembrane region LPH57_02750 PF03091 CutA1 divalent ion tolerance protein LPH57_02755 PF00166 Chaperonin 10 Kd subunit LPH57_02760 PF00118 TCP-1/cpn60 chaperonin family LPH57_02785 PF01370 NAD dependent epimerase/dehydratase family LPH57_02790 PF01370 NAD dependent epimerase/dehydratase family LPH57_02795 PF16363 GDP-mannose 4,6 dehydratase LPH57_02810 PF00291 Pyridoxal-phosphate dependent enzyme LPH57_02830 PF00593 TonB dependent receptor LPH57_02830 PF07715 TonB-dependent Receptor Plug Domain LPH57_02835 PF18331 PKHD-type hydroxylase C-terminal domain LPH57_02835 PF13640 2OG-Fe(II) oxygenase superfamily LPH57_02855 PF02424 ApbE family LPH57_02860 PF00175 Oxidoreductase NAD-binding domain LPH57_02860 PF00258 Flavodoxin LPH57_02860 PF00667 FAD binding domain LPH57_02870 PF01636 Phosphotransferase enzyme family LPH57_02875 PF00483 Nucleotidyl transferase LPH57_02880 PF00308 Bacterial dnaA protein LPH57_02885 PF01594 AI-2E family transporter LPH57_02895 PF02769 AIR synthase related protein, C-terminal domain LPH57_02895 PF00586 AIR synthase related protein, N-terminal domain LPH57_02900 PF00551 Formyl transferase LPH57_02915 PF02223 Thymidylate kinase LPH57_02920 PF05649 Peptidase family M13 LPH57_02920 PF01431 Peptidase family M13 LPH57_02925 PF07977 FabA-like domain LPH57_02930 PF01171 PP-loop family LPH57_02935 PF04381 Putative exonuclease, RdgC LPH57_02945 PF00762 Ferrochelatase LPH57_02955 PF02416 mttA/Hcf106 family LPH57_02960 PF02416 mttA/Hcf106 family LPH57_02965 PF00902 Sec-independent protein translocase protein (TatC) LPH57_02975 PF02540 NAD synthase LPH57_02975 PF00117 Glutamine amidotransferase class-I LPH57_02975 PF00958 GMP synthase C terminal domain LPH57_02980 PF00127 Copper binding proteins, plastocyanin/azurin family LPH57_02985 PF03193 RsgA GTPase LPH57_02990 PF02021 Uncharacterised protein family UPF0102 LPH57_02995 PF04348 LppC putative lipoprotein LPH57_03000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH57_03005 PF07715 TonB-dependent Receptor Plug Domain LPH57_03005 PF00593 TonB dependent receptor LPH57_03010 PF09334 tRNA synthetases class I (M) LPH57_03010 PF01588 Putative tRNA binding domain LPH57_03020 PF04060 Putative Fe-S cluster LPH57_03065 PF07687 Peptidase dimerisation domain LPH57_03065 PF01546 Peptidase family M20/M25/M40 LPH57_03090 PF05567 Neisseria PilC beta-propeller domain LPH57_03115 PF11892 Domain of unknown function (DUF3412) LPH57_03115 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LPH57_03115 PF03641 Possible lysine decarboxylase LPH57_03125 PF12792 CSS motif domain associated with EAL LPH57_03125 PF00563 EAL domain LPH57_03135 PF00899 ThiF family LPH57_03140 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LPH57_03140 PF01926 50S ribosome-binding GTPase LPH57_03145 PF13360 PQQ-like domain LPH57_03145 PF01011 PQQ enzyme repeat LPH57_03165 PF04055 Radical SAM superfamily LPH57_03170 PF00334 Nucleoside diphosphate kinase LPH57_03175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LPH57_03175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LPH57_03180 PF00709 Adenylosuccinate synthetase LPH57_03190 PF01145 SPFH domain / Band 7 family LPH57_03195 PF01145 SPFH domain / Band 7 family LPH57_03195 PF12221 Bacterial membrane protein N terminal LPH57_03200 PF00107 Zinc-binding dehydrogenase LPH57_03200 PF08240 Alcohol dehydrogenase GroES-like domain LPH57_03205 PF00072 Response regulator receiver domain LPH57_03220 PF03129 Anticodon binding domain LPH57_03220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH57_03220 PF04073 Aminoacyl-tRNA editing domain LPH57_03230 PF01066 CDP-alcohol phosphatidyltransferase LPH57_03240 PF00583 Acetyltransferase (GNAT) family LPH57_03255 PF14310 Fibronectin type III-like domain LPH57_03255 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH57_03255 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH57_03260 PF00924 Mechanosensitive ion channel LPH57_03265 PF02152 Dihydroneopterin aldolase LPH57_03270 PF00814 Glycoprotease family LPH57_03275 PF01165 Ribosomal protein S21 LPH57_03280 PF09424 Yqey-like protein LPH57_03285 PF03631 Virulence factor BrkB LPH57_03290 PF08278 DNA primase DnaG DnaB-binding LPH57_03290 PF08275 DNA primase catalytic core, N-terminal domain LPH57_03290 PF10410 DnaB-helicase binding domain of primase LPH57_03290 PF01807 CHC2 zinc finger LPH57_03300 PF00579 tRNA synthetases class I (W and Y) LPH57_03305 PF13538 UvrD-like helicase C-terminal domain LPH57_03310 PF12705 PD-(D/E)XK nuclease superfamily LPH57_03310 PF00580 UvrD/REP helicase N-terminal domain LPH57_03310 PF13361 UvrD-like helicase C-terminal domain LPH57_03315 PF17946 RecC C-terminal domain LPH57_03320 PF00005 ABC transporter LPH57_03325 PF02405 Permease MlaE LPH57_03330 PF02470 MlaD protein LPH57_03335 PF05494 MlaC protein LPH57_03345 PF04333 MlaA lipoprotein LPH57_03350 PF02646 RmuC family LPH57_03355 PF00005 ABC transporter LPH57_03370 PF13520 Amino acid permease LPH57_03380 PF10672 S-adenosylmethionine-dependent methyltransferase LPH57_03380 PF17785 PUA-like domain LPH57_03385 PF03741 Integral membrane protein TerC family LPH57_03405 PF01521 Iron-sulphur cluster biosynthesis LPH57_03420 PF00486 Transcriptional regulatory protein, C terminal LPH57_03420 PF00072 Response regulator receiver domain LPH57_03425 PF00672 HAMP domain LPH57_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_03425 PF00512 His Kinase A (phospho-acceptor) domain LPH57_03425 PF01627 Hpt domain LPH57_03425 PF00072 Response regulator receiver domain LPH57_03425 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH57_03430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH57_03430 PF00072 Response regulator receiver domain LPH57_03430 PF01627 Hpt domain LPH57_03430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_03430 PF00672 HAMP domain LPH57_03430 PF00512 His Kinase A (phospho-acceptor) domain LPH57_03435 PF00210 Ferritin-like domain LPH57_03460 PF02772 S-adenosylmethionine synthetase, central domain LPH57_03460 PF00438 S-adenosylmethionine synthetase, N-terminal domain LPH57_03460 PF02773 S-adenosylmethionine synthetase, C-terminal domain LPH57_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_03475 PF00072 Response regulator receiver domain LPH57_03475 PF00486 Transcriptional regulatory protein, C terminal LPH57_03485 PF01207 Dihydrouridine synthase (Dus) LPH57_03490 PF00593 TonB dependent receptor LPH57_03490 PF07715 TonB-dependent Receptor Plug Domain LPH57_03505 PF17871 AAA lid domain LPH57_03505 PF07724 AAA domain (Cdc48 subfamily) LPH57_03505 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_03505 PF02861 Clp amino terminal domain, pathogenicity island component LPH57_03505 PF10431 C-terminal, D2-small domain, of ClpB protein LPH57_03515 PF00301 Rubredoxin LPH57_03520 PF02581 Thiamine monophosphate synthase LPH57_03535 PF00067 Cytochrome P450 LPH57_03565 PF00772 DnaB-like helicase N terminal domain LPH57_03565 PF03796 DnaB-like helicase C terminal domain LPH57_03570 PF00691 OmpA family LPH57_03570 PF05736 OprF membrane domain LPH57_03580 PF00248 Aldo/keto reductase family LPH57_03585 PF17092 Penicillin-binding protein OB-like domain LPH57_03585 PF00912 Transglycosylase LPH57_03585 PF00905 Penicillin binding protein transpeptidase domain LPH57_03590 PF11104 Type IV pilus assembly protein PilM; LPH57_03595 PF05137 Fimbrial assembly protein (PilN) LPH57_03600 PF04350 Pilus assembly protein, PilO LPH57_03605 PF04351 Pilus assembly protein, PilP LPH57_03610 PF11741 AMIN domain LPH57_03610 PF00263 Bacterial type II and III secretion system protein LPH57_03610 PF03958 Bacterial type II/III secretion system short domain LPH57_03610 PF07660 Secretin and TonB N terminus short domain LPH57_03620 PF00884 Sulfatase LPH57_03620 PF08019 Phosphoethanolamine transferase EptA/EptB LPH57_03625 PF00067 Cytochrome P450 LPH57_03630 PF00270 DEAD/DEAH box helicase LPH57_03630 PF00271 Helicase conserved C-terminal domain LPH57_03630 PF17191 RecG wedge domain LPH57_03635 PF01042 Endoribonuclease L-PSP LPH57_03640 PF13291 ACT domain LPH57_03640 PF04607 Region found in RelA / SpoT proteins LPH57_03640 PF02824 TGS domain LPH57_03650 PF01565 FAD binding domain LPH57_03650 PF02913 FAD linked oxidases, C-terminal domain LPH57_03655 PF00691 OmpA family LPH57_03655 PF05736 OprF membrane domain LPH57_03660 PF02600 Disulfide bond formation protein DsbB LPH57_03665 PF00593 TonB dependent receptor LPH57_03665 PF07715 TonB-dependent Receptor Plug Domain LPH57_03670 PF02590 Predicted SPOUT methyltransferase LPH57_03685 PF00271 Helicase conserved C-terminal domain LPH57_03685 PF04851 Type III restriction enzyme, res subunit LPH57_03685 PF12344 Ultra-violet resistance protein B LPH57_03685 PF17757 UvrB interaction domain LPH57_03685 PF02151 UvrB/uvrC motif LPH57_03700 PF00701 Dihydrodipicolinate synthetase family LPH57_03710 PF00578 AhpC/TSA family LPH57_03715 PF13638 PIN domain LPH57_03715 PF02562 PhoH-like protein LPH57_03740 PF02769 AIR synthase related protein, C-terminal domain LPH57_03740 PF00586 AIR synthase related protein, N-terminal domain LPH57_03745 PF01029 NusB family LPH57_03750 PF00885 6,7-dimethyl-8-ribityllumazine synthase LPH57_03755 PF00925 GTP cyclohydrolase II LPH57_03755 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LPH57_03760 PF00677 Lumazine binding domain LPH57_03765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LPH57_03765 PF01872 RibD C-terminal domain LPH57_03775 PF03477 ATP cone domain LPH57_03785 PF00464 Serine hydroxymethyltransferase LPH57_03790 PF00005 ABC transporter LPH57_03790 PF12848 ABC transporter LPH57_03795 PF06039 Malate:quinone oxidoreductase (Mqo) LPH57_03800 PF04134 Protein of unknown function, DUF393 LPH57_03805 PF02578 Multi-copper polyphenol oxidoreductase laccase LPH57_03810 PF01479 S4 domain LPH57_03810 PF00849 RNA pseudouridylate synthase LPH57_03815 PF13525 Outer membrane lipoprotein LPH57_03825 PF07670 Nucleoside recognition LPH57_03825 PF02421 Ferrous iron transport protein B LPH57_03825 PF07664 Ferrous iron transport protein B C terminus LPH57_03840 PF04386 Stringent starvation protein B LPH57_03845 PF02798 Glutathione S-transferase, N-terminal domain LPH57_03845 PF00043 Glutathione S-transferase, C-terminal domain LPH57_03865 PF01464 Transglycosylase SLT domain LPH57_03870 PF01938 TRAM domain LPH57_03870 PF04055 Radical SAM superfamily LPH57_03870 PF00919 Uncharacterized protein family UPF0004 LPH57_03875 PF02562 PhoH-like protein LPH57_03880 PF02130 Uncharacterized protein family UPF0054 LPH57_03890 PF00571 CBS domain LPH57_03890 PF03471 Transporter associated domain LPH57_03920 PF04829 Pre-toxin domain with VENN motif LPH57_03920 PF05860 haemagglutination activity domain LPH57_03920 PF13332 Hemagglutinin repeat LPH57_03925 PF04829 Pre-toxin domain with VENN motif LPH57_03925 PF05860 haemagglutination activity domain LPH57_03925 PF13332 Hemagglutinin repeat LPH57_03925 PF13018 Extended Signal Peptide of Type V secretion system LPH57_03930 PF08479 POTRA domain, ShlB-type LPH57_03930 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LPH57_03930 PF17287 POTRA domain LPH57_03940 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH57_03940 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH57_03945 PF01008 Initiation factor 2 subunit family LPH57_03955 PF00152 tRNA synthetases class II (D, K and N) LPH57_03960 PF00583 Acetyltransferase (GNAT) family LPH57_03965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LPH57_03965 PF03120 NAD-dependent DNA ligase OB-fold domain LPH57_03965 PF01653 NAD-dependent DNA ligase adenylation domain LPH57_03965 PF00533 BRCA1 C Terminus (BRCT) domain LPH57_03965 PF12826 Helix-hairpin-helix motif LPH57_03975 PF04354 ZipA, C-terminal FtsZ-binding domain LPH57_03980 PF02463 RecF/RecN/SMC N terminal domain LPH57_03985 PF03948 Ribosomal protein L9, C-terminal domain LPH57_03985 PF01281 Ribosomal protein L9, N-terminal domain LPH57_03990 PF01084 Ribosomal protein S18 LPH57_03995 PF01250 Ribosomal protein S6 LPH57_04000 PF01521 Iron-sulphur cluster biosynthesis LPH57_04005 PF01336 OB-fold nucleic acid binding domain LPH57_04005 PF00152 tRNA synthetases class II (D, K and N) LPH57_04010 PF01061 ABC-2 type transporter LPH57_04015 PF00005 ABC transporter LPH57_04025 PF01180 Dihydroorotate dehydrogenase LPH57_04030 PF01565 FAD binding domain LPH57_04030 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LPH57_04035 PF00892 EamA-like transporter family LPH57_04040 PF01569 PAP2 superfamily LPH57_04045 PF04551 GcpE protein LPH57_04055 PF00072 Response regulator receiver domain LPH57_04060 PF00889 Elongation factor TS LPH57_04065 PF00318 Ribosomal protein S2 LPH57_04080 PF00005 ABC transporter LPH57_04080 PF00664 ABC transporter transmembrane region LPH57_04100 PF02321 Outer membrane efflux protein LPH57_04105 PF12850 Calcineurin-like phosphoesterase superfamily domain LPH57_04110 PF02541 Ppx/GppA phosphatase family LPH57_04115 PF02503 Polyphosphate kinase middle domain LPH57_04115 PF13090 Polyphosphate kinase C-terminal domain 2 LPH57_04115 PF17941 Polyphosphate kinase C-terminal domain 1 LPH57_04115 PF13089 Polyphosphate kinase N-terminal domain LPH57_04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_04120 PF00989 PAS fold LPH57_04120 PF11808 Phosphate regulon sensor protein PhoR LPH57_04120 PF00512 His Kinase A (phospho-acceptor) domain LPH57_04125 PF00072 Response regulator receiver domain LPH57_04125 PF00486 Transcriptional regulatory protein, C terminal LPH57_04130 PF13181 Tetratricopeptide repeat LPH57_04130 PF01435 Peptidase family M48 LPH57_04135 PF00462 Glutaredoxin LPH57_04140 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH57_04150 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LPH57_04150 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LPH57_04160 PF00037 4Fe-4S binding domain LPH57_04160 PF11953 Domain of unknown function (DUF3470) LPH57_04170 PF01106 NifU-like domain LPH57_04175 PF01329 Pterin 4 alpha carbinolamine dehydratase LPH57_04190 PF01479 S4 domain LPH57_04190 PF00849 RNA pseudouridylate synthase LPH57_04195 PF00575 S1 RNA binding domain LPH57_04195 PF10150 Ribonuclease E/G family LPH57_04195 PF12111 Polyribonucleotide phosphorylase C terminal LPH57_04200 PF00072 Response regulator receiver domain LPH57_04200 PF00196 Bacterial regulatory proteins, luxR family LPH57_04205 PF17773 UPF0176 acylphosphatase like domain LPH57_04215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH57_04215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH57_04220 PF00545 ribonuclease LPH57_04230 PF00005 ABC transporter LPH57_04230 PF16326 ABC transporter C-terminal domain LPH57_04230 PF12848 ABC transporter LPH57_04235 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LPH57_04240 PF00313 'Cold-shock' DNA-binding domain LPH57_04250 PF01435 Peptidase family M48 LPH57_04255 PF00009 Elongation factor Tu GTP binding domain LPH57_04255 PF03144 Elongation factor Tu domain 2 LPH57_04255 PF03143 Elongation factor Tu C-terminal domain LPH57_04260 PF14492 Elongation Factor G, domain II LPH57_04260 PF03764 Elongation factor G, domain IV LPH57_04260 PF00009 Elongation factor Tu GTP binding domain LPH57_04260 PF03144 Elongation factor Tu domain 2 LPH57_04260 PF00679 Elongation factor G C-terminus LPH57_04265 PF00177 Ribosomal protein S7p/S5e LPH57_04270 PF00164 Ribosomal protein S12/S23 LPH57_04275 PF04997 RNA polymerase Rpb1, domain 1 LPH57_04275 PF04983 RNA polymerase Rpb1, domain 3 LPH57_04275 PF05000 RNA polymerase Rpb1, domain 4 LPH57_04275 PF04998 RNA polymerase Rpb1, domain 5 LPH57_04275 PF00623 RNA polymerase Rpb1, domain 2 LPH57_04280 PF04563 RNA polymerase beta subunit LPH57_04280 PF04560 RNA polymerase Rpb2, domain 7 LPH57_04280 PF00562 RNA polymerase Rpb2, domain 6 LPH57_04280 PF10385 RNA polymerase beta subunit external 1 domain LPH57_04280 PF04565 RNA polymerase Rpb2, domain 3 LPH57_04280 PF04561 RNA polymerase Rpb2, domain 2 LPH57_04285 PF16320 Ribosomal protein L7/L12 dimerisation domain LPH57_04285 PF00542 Ribosomal protein L7/L12 C-terminal domain LPH57_04290 PF00466 Ribosomal protein L10 LPH57_04295 PF00687 Ribosomal protein L1p/L10e family LPH57_04300 PF03946 Ribosomal protein L11, N-terminal domain LPH57_04300 PF00298 Ribosomal protein L11, RNA binding domain LPH57_04305 PF02357 Transcription termination factor nusG LPH57_04305 PF00467 KOW motif LPH57_04310 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LPH57_04320 PF03144 Elongation factor Tu domain 2 LPH57_04320 PF00009 Elongation factor Tu GTP binding domain LPH57_04320 PF03143 Elongation factor Tu C-terminal domain LPH57_04340 PF06071 Protein of unknown function (DUF933) LPH57_04340 PF01926 50S ribosome-binding GTPase LPH57_04345 PF01195 Peptidyl-tRNA hydrolase LPH57_04350 PF14693 Ribosomal protein TL5, C-terminal domain LPH57_04350 PF01386 Ribosomal L25p family LPH57_04355 PF14572 Phosphoribosyl synthetase-associated domain LPH57_04355 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LPH57_04365 PF08544 GHMP kinases C terminal LPH57_04365 PF00288 GHMP kinases N terminal domain LPH57_04370 PF03550 Outer membrane lipoprotein LolB LPH57_04380 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LPH57_04380 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LPH57_04380 PF01488 Shikimate / quinate 5-dehydrogenase LPH57_04385 PF00472 RF-1 domain LPH57_04385 PF03462 PCRF domain LPH57_04395 PF02926 THUMP domain LPH57_04395 PF10672 S-adenosylmethionine-dependent methyltransferase LPH57_04395 PF01170 Putative RNA methylase family UPF0020 LPH57_04455 PF00497 Bacterial extracellular solute-binding proteins, family 3 LPH57_04460 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_04465 PF00005 ABC transporter LPH57_04470 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_04475 PF13361 UvrD-like helicase C-terminal domain LPH57_04475 PF12705 PD-(D/E)XK nuclease superfamily LPH57_04475 PF00580 UvrD/REP helicase N-terminal domain LPH57_04485 PF01914 MarC family integral membrane protein LPH57_04490 PF00462 Glutaredoxin LPH57_04495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LPH57_04495 PF02222 ATP-grasp domain LPH57_04500 PF00731 AIR carboxylase LPH57_04520 PF07732 Multicopper oxidase LPH57_04520 PF07731 Multicopper oxidase LPH57_04530 PF13361 UvrD-like helicase C-terminal domain LPH57_04530 PF00580 UvrD/REP helicase N-terminal domain LPH57_04540 PF04349 Periplasmic glucan biosynthesis protein, MdoG LPH57_04545 PF01343 Peptidase family S49 LPH57_04550 PF01554 MatE LPH57_04565 PF00270 DEAD/DEAH box helicase LPH57_04565 PF17764 3′ DNA-binding domain (3′BD) LPH57_04565 PF18074 Primosomal protein N C-terminal domain LPH57_04565 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LPH57_04565 PF00271 Helicase conserved C-terminal domain LPH57_04570 PF00140 Sigma-70 factor, region 1.2 LPH57_04570 PF04542 Sigma-70 region 2 LPH57_04570 PF04545 Sigma-70, region 4 LPH57_04575 PF03167 Uracil DNA glycosylase superfamily LPH57_04580 PF01339 CheB methylesterase LPH57_04580 PF00072 Response regulator receiver domain LPH57_04585 PF18075 FtsX extracellular domain LPH57_04590 PF00005 ABC transporter LPH57_04595 PF00270 DEAD/DEAH box helicase LPH57_04595 PF00271 Helicase conserved C-terminal domain LPH57_04595 PF12300 ATP-dependent RNA helicase RhlB LPH57_04600 PF00085 Thioredoxin LPH57_04605 PF07498 Rho termination factor, N-terminal domain LPH57_04605 PF07497 Rho termination factor, RNA-binding domain LPH57_04605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH57_04610 PF03971 Monomeric isocitrate dehydrogenase LPH57_04615 PF09704 CRISPR-associated protein (Cas_Cas5) LPH57_04630 PF03572 Peptidase family S41 LPH57_04630 PF13180 PDZ domain LPH57_04635 PF01551 Peptidase family M23 LPH57_04645 PF00150 Cellulase (glycosyl hydrolase family 5) LPH57_04665 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH57_04665 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LPH57_04670 PF01493 GXGXG motif LPH57_04670 PF01645 Conserved region in glutamate synthase LPH57_04670 PF04898 Glutamate synthase central domain LPH57_04670 PF00310 Glutamine amidotransferases class-II LPH57_04680 PF03807 NADP oxidoreductase coenzyme F420-dependent LPH57_04680 PF14748 Pyrroline-5-carboxylate reductase dimerisation LPH57_04765 PF13332 Hemagglutinin repeat LPH57_04765 PF04829 Pre-toxin domain with VENN motif LPH57_04765 PF05860 haemagglutination activity domain LPH57_04770 PF13332 Hemagglutinin repeat LPH57_04770 PF04829 Pre-toxin domain with VENN motif LPH57_04770 PF05860 haemagglutination activity domain LPH57_04770 PF13018 Extended Signal Peptide of Type V secretion system LPH57_04810 PF12008 Type I restriction and modification enzyme - subunit R C terminal LPH57_04810 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH57_04810 PF18766 SWI2/SNF2 ATPase LPH57_04815 PF01420 Type I restriction modification DNA specificity domain LPH57_04825 PF02384 N-6 DNA Methylase LPH57_04825 PF12161 HsdM N-terminal domain LPH57_04910 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH57_04910 PF18766 SWI2/SNF2 ATPase LPH57_04910 PF11867 Domain of unknown function (DUF3387) LPH57_04915 PF01420 Type I restriction modification DNA specificity domain LPH57_04920 PF02384 N-6 DNA Methylase LPH57_04925 PF02384 N-6 DNA Methylase LPH57_05045 PF00106 short chain dehydrogenase LPH57_05065 PF00912 Transglycosylase LPH57_05065 PF00905 Penicillin binding protein transpeptidase domain LPH57_05065 PF14814 Bifunctional transglycosylase second domain LPH57_05075 PF13307 Helicase C-terminal domain LPH57_05075 PF04851 Type III restriction enzyme, res subunit LPH57_05085 PF00484 Carbonic anhydrase LPH57_05090 PF00534 Glycosyl transferases group 1 LPH57_05095 PF01522 Polysaccharide deacetylase LPH57_05105 PF00005 ABC transporter LPH57_05105 PF09383 NIL domain LPH57_05110 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_05115 PF03180 NLPA lipoprotein LPH57_05130 PF02817 e3 binding domain LPH57_05130 PF00364 Biotin-requiring enzyme LPH57_05130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH57_05140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH57_05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH57_05150 PF01545 Cation efflux family LPH57_05160 PF01053 Cys/Met metabolism PLP-dependent enzyme LPH57_05165 PF00561 alpha/beta hydrolase fold LPH57_05170 PF01551 Peptidase family M23 LPH57_05175 PF01975 Survival protein SurE LPH57_05190 PF01551 Peptidase family M23 LPH57_05190 PF01476 LysM domain LPH57_05205 PF01168 Alanine racemase, N-terminal domain LPH57_05205 PF00842 Alanine racemase, C-terminal domain LPH57_05210 PF01266 FAD dependent oxidoreductase LPH57_05220 PF01641 SelR domain LPH57_05230 PF07691 PA14 domain LPH57_05230 PF02838 Glycosyl hydrolase family 20, domain 2 LPH57_05230 PF00728 Glycosyl hydrolase family 20, catalytic domain LPH57_05240 PF07691 PA14 domain LPH57_05240 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH57_05240 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH57_05240 PF14310 Fibronectin type III-like domain LPH57_05255 PF17678 Glycosyl hydrolase family 92 N-terminal domain LPH57_05255 PF07971 Glycosyl hydrolase family 92 LPH57_05260 PF01301 Glycosyl hydrolases family 35 LPH57_05265 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LPH57_05270 PF09312 SurA N-terminal domain LPH57_05270 PF00639 PPIC-type PPIASE domain LPH57_05275 PF04453 LPS transport system D LPH57_05285 PF01494 FAD binding domain LPH57_05290 PF01494 FAD binding domain LPH57_05295 PF12833 Helix-turn-helix domain LPH57_05295 PF06719 AraC-type transcriptional regulator N-terminus LPH57_05300 PF02525 Flavodoxin-like fold LPH57_05310 PF03466 LysR substrate binding domain LPH57_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_05315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH57_05315 PF14824 Sirohaem biosynthesis protein central LPH57_05315 PF10414 Sirohaem synthase dimerisation region LPH57_05320 PF00291 Pyridoxal-phosphate dependent enzyme LPH57_05330 PF00274 Fructose-bisphosphate aldolase class-I LPH57_05340 PF00224 Pyruvate kinase, barrel domain LPH57_05340 PF02887 Pyruvate kinase, alpha/beta domain LPH57_05345 PF00162 Phosphoglycerate kinase LPH57_05360 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH57_05365 PF01475 Ferric uptake regulator family LPH57_05380 PF00553 Cellulose binding domain LPH57_05380 PF00150 Cellulase (glycosyl hydrolase family 5) LPH57_05390 PF05193 Peptidase M16 inactive domain LPH57_05390 PF00675 Insulinase (Peptidase family M16) LPH57_05405 PF03330 Lytic transglycolase LPH57_05410 PF07516 SecA Wing and Scaffold domain LPH57_05410 PF01043 SecA preprotein cross-linking domain LPH57_05410 PF07517 SecA DEAD-like domain LPH57_05410 PF02810 SEC-C motif LPH57_05415 PF01551 Peptidase family M23 LPH57_05415 PF08525 Opacity-associated protein A N-terminal motif LPH57_05415 PF01476 LysM domain LPH57_05425 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LPH57_05430 PF00091 Tubulin/FtsZ family, GTPase domain LPH57_05430 PF12327 FtsZ family, C-terminal domain LPH57_05435 PF02491 SHS2 domain inserted in FTSA LPH57_05440 PF03799 Cell division protein FtsQ LPH57_05440 PF08478 POTRA domain, FtsQ-type LPH57_05445 PF07478 D-ala D-ala ligase C-terminus LPH57_05450 PF01225 Mur ligase family, catalytic domain LPH57_05450 PF02875 Mur ligase family, glutamate ligase domain LPH57_05450 PF08245 Mur ligase middle domain LPH57_05455 PF03033 Glycosyltransferase family 28 N-terminal domain LPH57_05455 PF04101 Glycosyltransferase family 28 C-terminal domain LPH57_05460 PF01098 Cell cycle protein LPH57_05465 PF00953 Glycosyl transferase family 4 LPH57_05470 PF08245 Mur ligase middle domain LPH57_05470 PF02875 Mur ligase family, glutamate ligase domain LPH57_05470 PF01225 Mur ligase family, catalytic domain LPH57_05475 PF01225 Mur ligase family, catalytic domain LPH57_05475 PF08245 Mur ligase middle domain LPH57_05475 PF02875 Mur ligase family, glutamate ligase domain LPH57_05480 PF00905 Penicillin binding protein transpeptidase domain LPH57_05480 PF03717 Penicillin-binding Protein dimerisation domain LPH57_05485 PF04999 Cell division protein FtsL LPH57_05490 PF01795 MraW methylase family LPH57_05495 PF02381 MraZ protein, putative antitoxin-like LPH57_05500 PF03600 Citrate transporter LPH57_05500 PF02080 TrkA-C domain LPH57_05505 PF02390 Putative methyltransferase LPH57_05510 PF05690 Thiazole biosynthesis protein ThiG LPH57_05520 PF03797 Autotransporter beta-domain LPH57_05520 PF00657 GDSL-like Lipase/Acylhydrolase LPH57_05550 PF07977 FabA-like domain LPH57_05575 PF00692 dUTPase LPH57_05585 PF01119 DNA mismatch repair protein, C-terminal domain LPH57_05585 PF08676 MutL C terminal dimerisation domain LPH57_05590 PF01520 N-acetylmuramoyl-L-alanine amidase LPH57_05590 PF11741 AMIN domain LPH57_05595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LPH57_05600 PF01256 Carbohydrate kinase LPH57_05600 PF03853 YjeF-related protein N-terminus LPH57_05605 PF02601 Exonuclease VII, large subunit LPH57_05605 PF13742 OB-fold nucleic acid binding domain LPH57_05620 PF01612 3'-5' exonuclease LPH57_05620 PF00570 HRDC domain LPH57_05650 PF00216 Bacterial DNA-binding protein LPH57_05655 PF03483 B3/4 domain LPH57_05655 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LPH57_05655 PF01588 Putative tRNA binding domain LPH57_05655 PF03147 Ferredoxin-fold anticodon binding domain LPH57_05655 PF03484 tRNA synthetase B5 domain LPH57_05660 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LPH57_05660 PF01409 tRNA synthetases class II core domain (F) LPH57_05665 PF00453 Ribosomal protein L20 LPH57_05670 PF01632 Ribosomal protein L35 LPH57_05675 PF00707 Translation initiation factor IF-3, C-terminal domain LPH57_05675 PF05198 Translation initiation factor IF-3, N-terminal domain LPH57_05680 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH57_05680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH57_05680 PF02824 TGS domain LPH57_05680 PF03129 Anticodon binding domain LPH57_05690 PF18030 RimK PreATP-grasp domain LPH57_05690 PF08443 RimK-like ATP-grasp domain LPH57_05695 PF00486 Transcriptional regulatory protein, C terminal LPH57_05695 PF00072 Response regulator receiver domain LPH57_05700 PF11808 Phosphate regulon sensor protein PhoR LPH57_05700 PF00989 PAS fold LPH57_05700 PF00512 His Kinase A (phospho-acceptor) domain LPH57_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_05705 PF01121 Dephospho-CoA kinase LPH57_05710 PF01478 Type IV leader peptidase family LPH57_05710 PF06750 Bacterial Peptidase A24 N-terminal domain LPH57_05715 PF00482 Type II secretion system (T2SS), protein F LPH57_05720 PF00114 Pilin (bacterial filament) LPH57_05720 PF07963 Prokaryotic N-terminal methylation motif LPH57_05735 PF00114 Pilin (bacterial filament) LPH57_05735 PF07963 Prokaryotic N-terminal methylation motif LPH57_05740 PF00114 Pilin (bacterial filament) LPH57_05740 PF07963 Prokaryotic N-terminal methylation motif LPH57_05750 PF00437 Type II/IV secretion system protein LPH57_05750 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH57_05755 PF00158 Sigma-54 interaction domain LPH57_05755 PF00072 Response regulator receiver domain LPH57_05755 PF02954 Bacterial regulatory protein, Fis family LPH57_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_05760 PF00512 His Kinase A (phospho-acceptor) domain LPH57_05765 PF08442 ATP-grasp domain LPH57_05765 PF00549 CoA-ligase LPH57_05770 PF02629 CoA binding domain LPH57_05770 PF00549 CoA-ligase LPH57_05775 PF10396 GTP-binding protein TrmE N-terminus LPH57_05775 PF12631 MnmE helical domain LPH57_05775 PF01926 50S ribosome-binding GTPase LPH57_05785 PF14849 YidC periplasmic domain LPH57_05785 PF02096 60Kd inner membrane protein LPH57_05790 PF00825 Ribonuclease P LPH57_05795 PF00468 Ribosomal protein L34 LPH57_05800 PF00308 Bacterial dnaA protein LPH57_05800 PF11638 DnaA N-terminal domain LPH57_05800 PF08299 Bacterial dnaA protein helix-turn-helix LPH57_05805 PF00712 DNA polymerase III beta subunit, N-terminal domain LPH57_05805 PF02767 DNA polymerase III beta subunit, central domain LPH57_05805 PF02768 DNA polymerase III beta subunit, C-terminal domain LPH57_05810 PF02463 RecF/RecN/SMC N terminal domain LPH57_05815 PF00204 DNA gyrase B LPH57_05815 PF18053 DNA gyrase B subunit insert domain LPH57_05815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_05815 PF01751 Toprim domain LPH57_05815 PF00986 DNA gyrase B subunit, carboxyl terminus LPH57_05825 PF01435 Peptidase family M48 LPH57_05835 PF03544 Gram-negative bacterial TonB protein C-terminal LPH57_05840 PF01618 MotA/TolQ/ExbB proton channel family LPH57_05845 PF02472 Biopolymer transport protein ExbD/TolR LPH57_05850 PF02472 Biopolymer transport protein ExbD/TolR LPH57_05870 PF01218 Coproporphyrinogen III oxidase LPH57_05895 PF00793 DAHP synthetase I family LPH57_05900 PF00114 Pilin (bacterial filament) LPH57_05900 PF07963 Prokaryotic N-terminal methylation motif LPH57_05920 PF05567 Neisseria PilC beta-propeller domain LPH57_05925 PF00114 Pilin (bacterial filament) LPH57_05925 PF07963 Prokaryotic N-terminal methylation motif LPH57_05930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LPH57_05935 PF00155 Aminotransferase class I and II LPH57_05940 PF01741 Large-conductance mechanosensitive channel, MscL LPH57_05960 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LPH57_05970 PF02559 CarD-like/TRCF domain LPH57_05970 PF03461 TRCF domain LPH57_05970 PF17757 UvrB interaction domain LPH57_05970 PF00270 DEAD/DEAH box helicase LPH57_05970 PF00271 Helicase conserved C-terminal domain LPH57_05975 PF01220 Dehydroquinase class II LPH57_05980 PF00364 Biotin-requiring enzyme LPH57_05985 PF00289 Biotin carboxylase, N-terminal domain LPH57_05985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH57_05985 PF02785 Biotin carboxylase C-terminal domain LPH57_05990 PF00580 UvrD/REP helicase N-terminal domain LPH57_05990 PF13361 UvrD-like helicase C-terminal domain LPH57_06000 PF00970 Oxidoreductase FAD-binding domain LPH57_06000 PF00042 Globin LPH57_06000 PF00175 Oxidoreductase NAD-binding domain LPH57_06010 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LPH57_06015 PF06613 KorB C-terminal beta-barrel domain LPH57_06015 PF02195 ParB-like nuclease domain LPH57_06015 PF08535 KorB domain LPH57_06030 PF04055 Radical SAM superfamily LPH57_06030 PF06968 Biotin and Thiamin Synthesis associated domain LPH57_06035 PF01734 Patatin-like phospholipase LPH57_06040 PF01040 UbiA prenyltransferase family LPH57_06060 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LPH57_06095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH57_06095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH57_06105 PF00448 SRP54-type protein, GTPase domain LPH57_06105 PF02978 Signal peptide binding domain LPH57_06105 PF02881 SRP54-type protein, helical bundle domain LPH57_06125 PF13954 PapC N-terminal domain LPH57_06125 PF13953 PapC C-terminal domain LPH57_06125 PF00577 Outer membrane usher protein LPH57_06130 PF02753 Pili assembly chaperone PapD, C-terminal domain LPH57_06130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LPH57_06135 PF16970 Type-1 fimbrial protein, A LPH57_06140 PF02464 Competence-damaged protein LPH57_06145 PF00083 Sugar (and other) transporter LPH57_06150 PF01926 50S ribosome-binding GTPase LPH57_06150 PF13167 GTP-binding GTPase N-terminal LPH57_06150 PF16360 GTP-binding GTPase Middle Region LPH57_06155 PF17209 Hfq protein LPH57_06165 PF00809 Pterin binding enzyme LPH57_06170 PF01434 Peptidase family M41 LPH57_06170 PF06480 FtsH Extracellular LPH57_06170 PF17862 AAA+ lid domain LPH57_06170 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_06175 PF01728 FtsJ-like methyltransferase LPH57_06180 PF01985 CRS1 / YhbY (CRM) domain LPH57_06195 PF00920 Dehydratase family LPH57_06225 PF03279 Bacterial lipid A biosynthesis acyltransferase LPH57_06230 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LPH57_06255 PF00886 Ribosomal protein S16 LPH57_06260 PF01782 RimM N-terminal domain LPH57_06260 PF05239 PRC-barrel domain LPH57_06265 PF01746 tRNA (Guanine-1)-methyltransferase LPH57_06270 PF01245 Ribosomal protein L19 LPH57_06275 PF00557 Metallopeptidase family M24 LPH57_06285 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LPH57_06285 PF14602 Hexapeptide repeat of succinyl-transferase LPH57_06285 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_06290 PF03960 ArsC family LPH57_06295 PF01546 Peptidase family M20/M25/M40 LPH57_06295 PF07687 Peptidase dimerisation domain LPH57_06300 PF13537 Glutamine amidotransferase domain LPH57_06300 PF00733 Asparagine synthase LPH57_06310 PF03060 Nitronate monooxygenase LPH57_06320 PF00717 Peptidase S24-like LPH57_06320 PF01726 LexA DNA binding domain LPH57_06325 PF00154 recA bacterial DNA recombination protein LPH57_06330 PF01411 tRNA synthetases class II (A) LPH57_06330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH57_06330 PF02272 DHHA1 domain LPH57_06335 PF02599 Global regulator protein family LPH57_06345 PF01432 Peptidase family M3 LPH57_06360 PF07732 Multicopper oxidase LPH57_06360 PF07731 Multicopper oxidase LPH57_06360 PF00394 Multicopper oxidase LPH57_06365 PF05275 Copper resistance protein B precursor (CopB) LPH57_06370 PF10458 Valyl tRNA synthetase tRNA binding arm LPH57_06370 PF00133 tRNA synthetases class I (I, L, M and V) LPH57_06370 PF08264 Anticodon-binding domain of tRNA LPH57_06390 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH57_06390 PF00883 Cytosol aminopeptidase family, catalytic domain LPH57_06410 PF01380 SIS domain LPH57_06425 PF17284 Spermidine synthase tetramerisation domain LPH57_06430 PF17810 Arginine decarboxylase helical bundle domain LPH57_06430 PF17944 Arginine decarboxylase C-terminal helical extension LPH57_06430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LPH57_06435 PF00106 short chain dehydrogenase LPH57_06445 PF05746 DALR anticodon binding domain LPH57_06445 PF00750 tRNA synthetases class I (R) LPH57_06445 PF03485 Arginyl tRNA synthetase N terminal domain LPH57_06450 PF04002 RadC-like JAB domain LPH57_06455 PF04127 DNA / pantothenate metabolism flavoprotein LPH57_06455 PF02441 Flavoprotein LPH57_06460 PF00692 dUTPase LPH57_06465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH57_06465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH57_06465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH57_06465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH57_06475 PF00156 Phosphoribosyl transferase domain LPH57_06520 PF07690 Major Facilitator Superfamily LPH57_06525 PF03702 Anhydro-N-acetylmuramic acid kinase LPH57_06530 PF04225 Opacity-associated protein A LysM-like domain LPH57_06530 PF01551 Peptidase family M23 LPH57_06535 PF00579 tRNA synthetases class I (W and Y) LPH57_06565 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH57_06565 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH57_06595 PF16658 Class II release factor RF3, C-terminal domain LPH57_06595 PF00009 Elongation factor Tu GTP binding domain LPH57_06600 PF03006 Haemolysin-III related LPH57_06605 PF00535 Glycosyl transferase family 2 LPH57_06610 PF01026 TatD related DNase LPH57_06625 PF01597 Glycine cleavage H-protein LPH57_06630 PF08669 Glycine cleavage T-protein C-terminal barrel domain LPH57_06630 PF01571 Aminomethyltransferase folate-binding domain LPH57_06640 PF16200 C-terminal region of band_7 LPH57_06640 PF01145 SPFH domain / Band 7 family LPH57_06645 PF03819 MazG nucleotide pyrophosphohydrolase domain LPH57_06650 PF00459 Inositol monophosphatase family LPH57_06655 PF00293 NUDIX domain LPH57_06660 PF00202 Aminotransferase class-III LPH57_06665 PF04452 RNA methyltransferase LPH57_06675 PF00270 DEAD/DEAH box helicase LPH57_06675 PF00271 Helicase conserved C-terminal domain LPH57_06680 PF01242 6-pyruvoyl tetrahydropterin synthase LPH57_06705 PF03653 Uncharacterised protein family (UPF0093) LPH57_06710 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LPH57_06715 PF01336 OB-fold nucleic acid binding domain LPH57_06715 PF02811 PHP domain LPH57_06715 PF14579 Helix-hairpin-helix motif LPH57_06715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LPH57_06715 PF07733 Bacterial DNA polymerase III alpha NTPase domain LPH57_06720 PF01259 SAICAR synthetase LPH57_06725 PF05099 Tellurite resistance protein TerB LPH57_06725 PF00226 DnaJ domain LPH57_06730 PF00834 Ribulose-phosphate 3 epimerase family LPH57_06740 PF04715 Anthranilate synthase component I, N terminal region LPH57_06740 PF00425 chorismate binding enzyme LPH57_06745 PF00117 Glutamine amidotransferase class-I LPH57_06750 PF00591 Glycosyl transferase family, a/b domain LPH57_06750 PF02885 Glycosyl transferase family, helical bundle domain LPH57_06755 PF00218 Indole-3-glycerol phosphate synthase LPH57_06770 PF12849 PBP superfamily domain LPH57_06790 PF00557 Metallopeptidase family M24 LPH57_06790 PF01321 Creatinase/Prolidase N-terminal domain LPH57_06805 PF01702 Queuine tRNA-ribosyltransferase LPH57_06810 PF02699 Preprotein translocase subunit LPH57_06815 PF13721 SecD export protein N-terminal TM region LPH57_06815 PF07549 SecD/SecF GG Motif LPH57_06815 PF02355 Protein export membrane protein LPH57_06820 PF02355 Protein export membrane protein LPH57_06820 PF07549 SecD/SecF GG Motif LPH57_06830 PF01743 Poly A polymerase head domain LPH57_06830 PF12626 Polymerase A arginine-rich C-terminus LPH57_06830 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH57_06835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LPH57_06840 PF02548 Ketopantoate hydroxymethyltransferase LPH57_06845 PF02569 Pantoate-beta-alanine ligase LPH57_06850 PF02261 Aspartate decarboxylase LPH57_06855 PF00342 Phosphoglucose isomerase LPH57_06865 PF02576 RimP N-terminal domain LPH57_06865 PF17384 RimP C-terminal SH3 domain LPH57_06870 PF13184 NusA-like KH domain LPH57_06870 PF08529 NusA N-terminal domain LPH57_06870 PF00575 S1 RNA binding domain LPH57_06875 PF04760 Translation initiation factor IF-2, N-terminal region LPH57_06875 PF08364 Bacterial translation initiation factor IF-2 associated region LPH57_06875 PF11987 Translation-initiation factor 2 LPH57_06875 PF00009 Elongation factor Tu GTP binding domain LPH57_06880 PF02033 Ribosome-binding factor A LPH57_06885 PF16198 tRNA pseudouridylate synthase B C-terminal domain LPH57_06885 PF01509 TruB family pseudouridylate synthase (N terminal domain) LPH57_06885 PF09157 Pseudouridine synthase II TruB, C-terminal LPH57_06890 PF00312 Ribosomal protein S15 LPH57_06895 PF00013 KH domain LPH57_06895 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LPH57_06895 PF00575 S1 RNA binding domain LPH57_06895 PF03725 3' exoribonuclease family, domain 2 LPH57_06895 PF01138 3' exoribonuclease family, domain 1 LPH57_06900 PF01638 HxlR-like helix-turn-helix LPH57_06905 PF05368 NmrA-like family LPH57_06910 PF00873 AcrB/AcrD/AcrF family LPH57_06920 PF00999 Sodium/hydrogen exchanger family LPH57_06940 PF00270 DEAD/DEAH box helicase LPH57_06940 PF00271 Helicase conserved C-terminal domain LPH57_06940 PF03880 DbpA RNA binding domain LPH57_06945 PF00766 Electron transfer flavoprotein FAD-binding domain LPH57_06945 PF01012 Electron transfer flavoprotein domain LPH57_06950 PF01012 Electron transfer flavoprotein domain LPH57_06955 PF16363 GDP-mannose 4,6 dehydratase LPH57_06960 PF00483 Nucleotidyl transferase LPH57_06965 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LPH57_06970 PF04321 RmlD substrate binding domain LPH57_06975 PF00483 Nucleotidyl transferase LPH57_06975 PF01050 Mannose-6-phosphate isomerase LPH57_06980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH57_06980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH57_06980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH57_06980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH57_07030 PF12951 Passenger-associated-transport-repeat LPH57_07030 PF00082 Subtilase family LPH57_07030 PF03797 Autotransporter beta-domain LPH57_07035 PF00082 Subtilase family LPH57_07035 PF12951 Passenger-associated-transport-repeat LPH57_07035 PF03797 Autotransporter beta-domain LPH57_07040 PF06779 Uncharacterised MFS-type transporter YbfB LPH57_07045 PF07669 Eco57I restriction-modification methylase LPH57_07055 PF00365 Phosphofructokinase LPH57_07065 PF01225 Mur ligase family, catalytic domain LPH57_07065 PF08245 Mur ligase middle domain LPH57_07065 PF02875 Mur ligase family, glutamate ligase domain LPH57_07070 PF01569 PAP2 superfamily LPH57_07095 PF00892 EamA-like transporter family LPH57_07100 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH57_07100 PF00883 Cytosol aminopeptidase family, catalytic domain LPH57_07110 PF01594 AI-2E family transporter LPH57_07130 PF00595 PDZ domain LPH57_07135 PF01370 NAD dependent epimerase/dehydratase family LPH57_07135 PF08338 Domain of unknown function (DUF1731) LPH57_07140 PF13193 AMP-binding enzyme C-terminal domain LPH57_07140 PF00501 AMP-binding enzyme LPH57_07145 PF00694 Aconitase C-terminal domain LPH57_07145 PF00330 Aconitase family (aconitate hydratase) LPH57_07160 PF11791 Aconitate B N-terminal domain LPH57_07160 PF06434 Aconitate hydratase 2 N-terminus LPH57_07160 PF00330 Aconitase family (aconitate hydratase) LPH57_07175 PF02384 N-6 DNA Methylase LPH57_07180 PF01420 Type I restriction modification DNA specificity domain LPH57_07195 PF18766 SWI2/SNF2 ATPase LPH57_07195 PF11867 Domain of unknown function (DUF3387) LPH57_07195 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH57_07220 PF00121 Triosephosphate isomerase LPH57_07235 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LPH57_07240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LPH57_07245 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LPH57_07250 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LPH57_07260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LPH57_07260 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LPH57_07260 PF10531 SLBB domain LPH57_07265 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LPH57_07265 PF00384 Molybdopterin oxidoreductase LPH57_07265 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LPH57_07270 PF00146 NADH dehydrogenase LPH57_07275 PF12838 4Fe-4S dicluster domain LPH57_07280 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LPH57_07285 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LPH57_07290 PF00361 Proton-conducting membrane transporter LPH57_07290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPH57_07295 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LPH57_07295 PF00361 Proton-conducting membrane transporter LPH57_07300 PF00361 Proton-conducting membrane transporter LPH57_07305 PF00106 short chain dehydrogenase LPH57_07310 PF03600 Citrate transporter LPH57_07320 PF00072 Response regulator receiver domain LPH57_07320 PF00486 Transcriptional regulatory protein, C terminal LPH57_07325 PF08521 Two-component sensor kinase N-terminal LPH57_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_07325 PF00512 His Kinase A (phospho-acceptor) domain LPH57_07335 PF00196 Bacterial regulatory proteins, luxR family LPH57_07335 PF00072 Response regulator receiver domain LPH57_07340 PF00672 HAMP domain LPH57_07340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_07340 PF00512 His Kinase A (phospho-acceptor) domain LPH57_07340 PF00072 Response regulator receiver domain LPH57_07340 PF01627 Hpt domain LPH57_07350 PF00375 Sodium:dicarboxylate symporter family LPH57_07355 PF00390 Malic enzyme, N-terminal domain LPH57_07355 PF01515 Phosphate acetyl/butaryl transferase LPH57_07355 PF03949 Malic enzyme, NAD binding domain LPH57_07360 PF00183 Hsp90 protein LPH57_07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_07370 PF01467 Cytidylyltransferase-like LPH57_07380 PF00037 4Fe-4S binding domain LPH57_07390 PF00990 Diguanylate cyclase, GGDEF domain LPH57_07395 PF01551 Peptidase family M23 LPH57_07395 PF01476 LysM domain LPH57_07400 PF01979 Amidohydrolase family LPH57_07405 PF01809 Putative membrane protein insertion efficiency factor LPH57_07410 PF01258 Prokaryotic dksA/traR C4-type zinc finger LPH57_07440 PF02657 Fe-S metabolism associated domain LPH57_07445 PF01406 tRNA synthetases class I (C) catalytic domain LPH57_07445 PF09190 DALR domain LPH57_07455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH57_07455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH57_07460 PF00764 Arginosuccinate synthase LPH57_07465 PF01546 Peptidase family M20/M25/M40 LPH57_07465 PF07687 Peptidase dimerisation domain LPH57_07470 PF00696 Amino acid kinase family LPH57_07470 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LPH57_07480 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH57_07485 PF00206 Lyase LPH57_07495 PF01472 PUA domain LPH57_07495 PF00696 Amino acid kinase family LPH57_07500 PF00171 Aldehyde dehydrogenase family LPH57_07510 PF00239 Resolvase, N terminal domain LPH57_07510 PF02796 Helix-turn-helix domain of resolvase LPH57_07535 PF00239 Resolvase, N terminal domain LPH57_07535 PF02796 Helix-turn-helix domain of resolvase LPH57_07550 PF13700 Domain of unknown function (DUF4158) LPH57_07550 PF01526 Tn3 transposase DDE domain LPH57_07580 PF03524 Conjugal transfer protein LPH57_07620 PF01593 Flavin containing amine oxidoreductase LPH57_07630 PF02627 Carboxymuconolactone decarboxylase family LPH57_07650 PF03466 LysR substrate binding domain LPH57_07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_07655 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LPH57_07660 PF09386 Antitoxin ParD LPH57_07665 PF02796 Helix-turn-helix domain of resolvase LPH57_07665 PF00239 Resolvase, N terminal domain LPH57_07690 PF02796 Helix-turn-helix domain of resolvase LPH57_07690 PF00239 Resolvase, N terminal domain LPH57_07730 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH57_07730 PF06594 Haemolysin-type calcium binding protein related domain LPH57_07735 PF14437 MafB19-like deaminase LPH57_07740 PF02742 Iron dependent repressor, metal binding and dimerisation domain LPH57_07740 PF01325 Iron dependent repressor, N-terminal DNA binding domain LPH57_07745 PF01566 Natural resistance-associated macrophage protein LPH57_07760 PF04376 Arginine-tRNA-protein transferase, N terminus LPH57_07760 PF04377 Arginine-tRNA-protein transferase, C terminus LPH57_07790 PF00082 Subtilase family LPH57_07790 PF12951 Passenger-associated-transport-repeat LPH57_07790 PF03797 Autotransporter beta-domain LPH57_07820 PF01553 Acyltransferase LPH57_07835 PF05221 S-adenosyl-L-homocysteine hydrolase LPH57_07835 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LPH57_07850 PF01351 Ribonuclease HII LPH57_07855 PF02684 Lipid-A-disaccharide synthetase LPH57_07860 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_07860 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LPH57_07865 PF07977 FabA-like domain LPH57_07870 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LPH57_07870 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_07875 PF07244 Surface antigen variable number repeat LPH57_07875 PF01103 Surface antigen LPH57_07880 PF17820 PDZ domain LPH57_07880 PF02163 Peptidase family M50 LPH57_07885 PF13288 DXP reductoisomerase C-terminal domain LPH57_07885 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LPH57_07885 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LPH57_07895 PF01255 Putative undecaprenyl diphosphate synthase LPH57_07900 PF01765 Ribosome recycling factor LPH57_07925 PF04305 Protein of unknown function (DUF455) LPH57_07930 PF00696 Amino acid kinase family LPH57_08000 PF01081 KDPG and KHG aldolase LPH57_08005 PF00920 Dehydratase family LPH57_08010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LPH57_08015 PF02685 Glucokinase LPH57_08020 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LPH57_08020 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LPH57_08025 PF00005 ABC transporter LPH57_08025 PF17912 MalK OB fold domain LPH57_08040 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH57_08045 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH57_08050 PF02910 Fumarate reductase flavoprotein C-term LPH57_08050 PF00890 FAD binding domain LPH57_08055 PF13237 4Fe-4S dicluster domain LPH57_08055 PF13085 2Fe-2S iron-sulfur cluster binding domain LPH57_08060 PF03937 Flavinator of succinate dehydrogenase LPH57_08070 PF12704 MacB-like periplasmic core domain LPH57_08070 PF02687 FtsX-like permease family LPH57_08075 PF00005 ABC transporter LPH57_08080 PF03772 Competence protein LPH57_08080 PF00753 Metallo-beta-lactamase superfamily LPH57_08095 PF00664 ABC transporter transmembrane region LPH57_08095 PF00005 ABC transporter LPH57_08100 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LPH57_08105 PF10609 NUBPL iron-transfer P-loop NTPase LPH57_08105 PF01883 Iron-sulfur cluster assembly protein LPH57_08120 PF13091 PLD-like domain LPH57_08145 PF03358 NADPH-dependent FMN reductase LPH57_08150 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LPH57_08150 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LPH57_08165 PF01300 Telomere recombination LPH57_08170 PF13368 Topoisomerase C-terminal repeat LPH57_08170 PF01131 DNA topoisomerase LPH57_08170 PF01751 Toprim domain LPH57_08180 PF04361 Protein of unknown function (DUF494) LPH57_08185 PF17782 DprA winged helix domain LPH57_08185 PF02481 DNA recombination-mediator protein A LPH57_08195 PF01327 Polypeptide deformylase LPH57_08200 PF00551 Formyl transferase LPH57_08200 PF02911 Formyl transferase, C-terminal domain LPH57_08205 PF01189 16S rRNA methyltransferase RsmB/F LPH57_08205 PF01029 NusB family LPH57_08210 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LPH57_08225 PF00114 Pilin (bacterial filament) LPH57_08225 PF07963 Prokaryotic N-terminal methylation motif LPH57_08345 PF00476 DNA polymerase family A LPH57_08345 PF01612 3'-5' exonuclease LPH57_08345 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH57_08345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH57_08350 PF01113 Dihydrodipicolinate reductase, N-terminus LPH57_08350 PF05173 Dihydrodipicolinate reductase, C-terminus LPH57_08355 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LPH57_08355 PF00117 Glutamine amidotransferase class-I LPH57_08360 PF02142 MGS-like domain LPH57_08360 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LPH57_08360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH57_08365 PF01272 Transcription elongation factor, GreA/GreB, C-term LPH57_08365 PF03449 Transcription elongation factor, N-terminal LPH57_08375 PF01368 DHH family LPH57_08375 PF17768 RecJ OB domain LPH57_08375 PF02272 DHHA1 domain LPH57_08385 PF01336 OB-fold nucleic acid binding domain LPH57_08385 PF00152 tRNA synthetases class II (D, K and N) LPH57_08390 PF00072 Response regulator receiver domain LPH57_08395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_08395 PF00512 His Kinase A (phospho-acceptor) domain LPH57_08395 PF00072 Response regulator receiver domain LPH57_08395 PF01627 Hpt domain LPH57_08400 PF00378 Enoyl-CoA hydratase/isomerase LPH57_08405 PF01842 ACT domain LPH57_08405 PF00696 Amino acid kinase family LPH57_08415 PF08245 Mur ligase middle domain LPH57_08435 PF00293 NUDIX domain LPH57_08445 PF02219 Methylenetetrahydrofolate reductase LPH57_08455 PF02545 Maf-like protein LPH57_08460 PF10150 Ribonuclease E/G family LPH57_08460 PF00575 S1 RNA binding domain LPH57_08470 PF01523 Putative modulator of DNA gyrase LPH57_08475 PF04751 Protein of unknown function (DUF615) LPH57_08480 PF01523 Putative modulator of DNA gyrase LPH57_08495 PF17761 DUF1016 N-terminal domain LPH57_08495 PF06250 YhcG PDDEXK nuclease domain LPH57_08520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_08520 PF03466 LysR substrate binding domain LPH57_08525 PF03358 NADPH-dependent FMN reductase LPH57_08535 PF00107 Zinc-binding dehydrogenase LPH57_08535 PF08240 Alcohol dehydrogenase GroES-like domain LPH57_08550 PF00248 Aldo/keto reductase family LPH57_08565 PF14602 Hexapeptide repeat of succinyl-transferase LPH57_08565 PF12804 MobA-like NTP transferase domain LPH57_08565 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_08575 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LPH57_08575 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LPH57_08580 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH57_08580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH57_08585 PF00231 ATP synthase LPH57_08590 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH57_08590 PF00306 ATP synthase alpha/beta chain, C terminal domain LPH57_08590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH57_08595 PF00213 ATP synthase delta (OSCP) subunit LPH57_08600 PF00430 ATP synthase B/B' CF(0) LPH57_08605 PF00137 ATP synthase subunit C LPH57_08610 PF00119 ATP synthase A chain LPH57_08620 PF00338 Ribosomal protein S10p/S20e LPH57_08625 PF00297 Ribosomal protein L3 LPH57_08630 PF00573 Ribosomal protein L4/L1 family LPH57_08635 PF00276 Ribosomal protein L23 LPH57_08640 PF03947 Ribosomal Proteins L2, C-terminal domain LPH57_08640 PF00181 Ribosomal Proteins L2, RNA binding domain LPH57_08645 PF00203 Ribosomal protein S19 LPH57_08650 PF00237 Ribosomal protein L22p/L17e LPH57_08655 PF07650 KH domain LPH57_08655 PF00189 Ribosomal protein S3, C-terminal domain LPH57_08660 PF00252 Ribosomal protein L16p/L10e LPH57_08665 PF00831 Ribosomal L29 protein LPH57_08670 PF00366 Ribosomal protein S17 LPH57_08675 PF00238 Ribosomal protein L14p/L23e LPH57_08680 PF00467 KOW motif LPH57_08680 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LPH57_08685 PF00673 ribosomal L5P family C-terminus LPH57_08685 PF00281 Ribosomal protein L5 LPH57_08690 PF00253 Ribosomal protein S14p/S29e LPH57_08695 PF00410 Ribosomal protein S8 LPH57_08700 PF00347 Ribosomal protein L6 LPH57_08705 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LPH57_08710 PF00333 Ribosomal protein S5, N-terminal domain LPH57_08710 PF03719 Ribosomal protein S5, C-terminal domain LPH57_08715 PF00327 Ribosomal protein L30p/L7e LPH57_08720 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LPH57_08725 PF00344 SecY translocase LPH57_08730 PF00416 Ribosomal protein S13/S18 LPH57_08735 PF00411 Ribosomal protein S11 LPH57_08740 PF00163 Ribosomal protein S4/S9 N-terminal domain LPH57_08740 PF01479 S4 domain LPH57_08745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LPH57_08745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LPH57_08745 PF01000 RNA polymerase Rpb3/RpoA insert domain LPH57_08750 PF01196 Ribosomal protein L17 LPH57_08755 PF04380 Membrane fusogenic activity LPH57_08760 PF13335 Magnesium chelatase, subunit ChlI C-terminal LPH57_08760 PF01078 Magnesium chelatase, subunit ChlI LPH57_08765 PF00561 alpha/beta hydrolase fold LPH57_08780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH57_08780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH57_08780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH57_08795 PF05698 Bacterial trigger factor protein (TF) C-terminus LPH57_08795 PF05697 Bacterial trigger factor protein (TF) LPH57_08800 PF00574 Clp protease LPH57_08805 PF10431 C-terminal, D2-small domain, of ClpB protein LPH57_08805 PF07724 AAA domain (Cdc48 subfamily) LPH57_08805 PF06689 ClpX C4-type zinc finger LPH57_08810 PF05362 Lon protease (S16) C-terminal proteolytic domain LPH57_08810 PF00004 ATPase family associated with various cellular activities (AAA) LPH57_08810 PF02190 ATP-dependent protease La (LON) substrate-binding domain LPH57_08815 PF00216 Bacterial DNA-binding protein LPH57_08840 PF03477 ATP cone domain LPH57_08840 PF00317 Ribonucleotide reductase, all-alpha domain LPH57_08840 PF02867 Ribonucleotide reductase, barrel domain LPH57_08845 PF00268 Ribonucleotide reductase, small chain LPH57_08870 PF00849 RNA pseudouridylate synthase LPH57_08870 PF01479 S4 domain LPH57_08875 PF13419 Haloacid dehalogenase-like hydrolase LPH57_08885 PF00830 Ribosomal L28 family LPH57_08890 PF00471 Ribosomal protein L33 LPH57_08895 PF13396 Phospholipase_D-nuclease N-terminal LPH57_08895 PF13091 PLD-like domain LPH57_08910 PF00114 Pilin (bacterial filament) LPH57_08910 PF07963 Prokaryotic N-terminal methylation motif LPH57_08930 PF00476 DNA polymerase family A LPH57_08930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH57_08930 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH57_08930 PF01612 3'-5' exonuclease LPH57_08950 PF00959 Phage lysozyme LPH57_08970 PF01555 DNA methylase LPH57_08990 PF02798 Glutathione S-transferase, N-terminal domain LPH57_08990 PF00043 Glutathione S-transferase, C-terminal domain LPH57_08995 PF00056 lactate/malate dehydrogenase, NAD binding domain LPH57_08995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LPH57_09000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LPH57_09005 PF03144 Elongation factor Tu domain 2 LPH57_09005 PF00009 Elongation factor Tu GTP binding domain LPH57_09005 PF00679 Elongation factor G C-terminus LPH57_09020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH57_09020 PF00529 HlyD membrane-fusion protein of T1SS LPH57_09045 PF03412 Peptidase C39 family LPH57_09045 PF00664 ABC transporter transmembrane region LPH57_09045 PF00005 ABC transporter LPH57_09050 PF01061 ABC-2 type transporter LPH57_09055 PF00005 ABC transporter LPH57_09060 PF05567 Neisseria PilC beta-propeller domain LPH57_09075 PF00270 DEAD/DEAH box helicase LPH57_09075 PF04408 Helicase associated domain (HA2) LPH57_09075 PF00271 Helicase conserved C-terminal domain LPH57_09075 PF08482 ATP-dependent helicase C-terminal LPH57_09085 PF13185 GAF domain LPH57_09090 PF17243 POTRA domain TamA domain 1 LPH57_09090 PF01103 Surface antigen LPH57_09095 PF04357 TamB, inner membrane protein subunit of TAM complex LPH57_09110 PF00285 Citrate synthase, C-terminal domain LPH57_09115 PF00694 Aconitase C-terminal domain LPH57_09115 PF00330 Aconitase family (aconitate hydratase) LPH57_09120 PF04303 PrpF protein LPH57_09140 PF01835 MG2 domain LPH57_09140 PF17962 Bacterial macroglobulin domain 6 LPH57_09140 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LPH57_09140 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LPH57_09140 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LPH57_09140 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LPH57_09140 PF07703 Alpha-2-macroglobulin bait region domain LPH57_09140 PF00207 Alpha-2-macroglobulin family LPH57_09145 PF02583 Metal-sensitive transcriptional repressor LPH57_09150 PF03824 High-affinity nickel-transport protein LPH57_09155 PF07859 alpha/beta hydrolase fold LPH57_09160 PF12852 Cupin LPH57_09160 PF12833 Helix-turn-helix domain LPH57_09175 PF01447 Thermolysin metallopeptidase, catalytic domain LPH57_09175 PF02868 Thermolysin metallopeptidase, alpha-helical domain LPH57_09175 PF16485 Protealysin propeptide LPH57_09180 PF00929 Exonuclease LPH57_09185 PF05552 Conserved TM helix LPH57_09185 PF00924 Mechanosensitive ion channel LPH57_09190 PF00391 PEP-utilising enzyme, mobile domain LPH57_09190 PF02896 PEP-utilising enzyme, TIM barrel domain LPH57_09190 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LPH57_09195 PF03618 Kinase/pyrophosphorylase LPH57_09215 PF04286 Protein of unknown function (DUF445) LPH57_09235 PF04359 Protein of unknown function (DUF493) LPH57_09240 PF03099 Biotin/lipoate A/B protein ligase family LPH57_09245 PF04055 Radical SAM superfamily LPH57_09245 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LPH57_09275 PF01595 Cyclin M transmembrane N-terminal domain LPH57_09275 PF03471 Transporter associated domain LPH57_09275 PF00571 CBS domain LPH57_09290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_09290 PF00986 DNA gyrase B subunit, carboxyl terminus LPH57_09290 PF00204 DNA gyrase B LPH57_09290 PF01751 Toprim domain LPH57_09300 PF00117 Glutamine amidotransferase class-I LPH57_09300 PF06418 CTP synthase N-terminus LPH57_09305 PF00793 DAHP synthetase I family LPH57_09310 PF03952 Enolase, N-terminal domain LPH57_09310 PF00113 Enolase, C-terminal TIM barrel domain LPH57_09315 PF04977 Septum formation initiator LPH57_09320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LPH57_09325 PF02542 YgbB family LPH57_09330 PF01713 Smr domain LPH57_09355 PF03886 ABC-type transport auxiliary lipoprotein component LPH57_09355 PF02470 MlaD protein LPH57_09360 PF00005 ABC transporter LPH57_09365 PF02405 Permease MlaE LPH57_09435 PF04093 rod shape-determining protein MreD LPH57_09440 PF03717 Penicillin-binding Protein dimerisation domain LPH57_09440 PF00905 Penicillin binding protein transpeptidase domain LPH57_09445 PF01098 Cell cycle protein LPH57_09450 PF02547 Queuosine biosynthesis protein LPH57_09455 PF02824 TGS domain LPH57_09455 PF04607 Region found in RelA / SpoT proteins LPH57_09455 PF13291 ACT domain LPH57_09470 PF03776 Septum formation topological specificity factor MinE LPH57_09475 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LPH57_09480 PF05209 Septum formation inhibitor MinC, N-terminal domain LPH57_09480 PF03775 Septum formation inhibitor MinC, C-terminal domain LPH57_09495 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH57_09505 PF01292 Prokaryotic cytochrome b561 LPH57_09510 PF04264 YceI-like domain LPH57_09515 PF00072 Response regulator receiver domain LPH57_09515 PF09308 LuxQ, periplasmic LPH57_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_09515 PF00512 His Kinase A (phospho-acceptor) domain LPH57_09525 PF01208 Uroporphyrinogen decarboxylase (URO-D) LPH57_09530 PF01761 3-dehydroquinate synthase LPH57_09535 PF01202 Shikimate kinase LPH57_09540 PF01243 Pyridoxamine 5'-phosphate oxidase LPH57_09540 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LPH57_09550 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LPH57_09550 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH57_09560 PF03932 CutC family LPH57_09585 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_09590 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_09595 PF00005 ABC transporter LPH57_09595 PF12857 TOBE-like domain LPH57_09635 PF01381 Helix-turn-helix LPH57_09710 PF10065 Uncharacterized conserved protein (DUF2303) LPH57_09735 PF04546 Sigma-70, non-essential region LPH57_09735 PF03979 Sigma-70 factor, region 1.1 LPH57_09735 PF04539 Sigma-70 region 3 LPH57_09735 PF04545 Sigma-70, region 4 LPH57_09735 PF04542 Sigma-70 region 2 LPH57_09735 PF00140 Sigma-70 factor, region 1.2 LPH57_09740 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH57_09740 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH57_09750 PF02321 Outer membrane efflux protein LPH57_09755 PF00529 HlyD membrane-fusion protein of T1SS LPH57_09755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH57_09760 PF07690 Major Facilitator Superfamily LPH57_09765 PF12697 Alpha/beta hydrolase family LPH57_09770 PF00155 Aminotransferase class I and II LPH57_09780 PF01040 UbiA prenyltransferase family LPH57_09785 PF00753 Metallo-beta-lactamase superfamily LPH57_09790 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH57_09790 PF01743 Poly A polymerase head domain LPH57_09790 PF01966 HD domain LPH57_09795 PF14718 Soluble lytic murein transglycosylase L domain LPH57_09795 PF01464 Transglycosylase SLT domain LPH57_09805 PF02666 Phosphatidylserine decarboxylase LPH57_09860 PF00456 Transketolase, thiamine diphosphate binding domain LPH57_09860 PF17831 Pyruvate dehydrogenase E1 component middle domain LPH57_09865 PF00698 Acyl transferase domain LPH57_09875 PF00550 Phosphopantetheine attachment site LPH57_09880 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH57_09880 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH57_09885 PF04715 Anthranilate synthase component I, N terminal region LPH57_09885 PF00425 chorismate binding enzyme LPH57_09890 PF02618 YceG-like family LPH57_09895 PF09115 DNA polymerase III, delta subunit, C terminal LPH57_09915 PF00459 Inositol monophosphatase family LPH57_09920 PF00588 SpoU rRNA Methylase family LPH57_09925 PF04055 Radical SAM superfamily LPH57_09930 PF09285 Elongation factor P, C-terminal LPH57_09930 PF08207 Elongation factor P (EF-P) KOW-like domain LPH57_09930 PF01132 Elongation factor P (EF-P) OB domain LPH57_09935 PF01979 Amidohydrolase family LPH57_09945 PF13419 Haloacid dehalogenase-like hydrolase LPH57_09960 PF00561 alpha/beta hydrolase fold LPH57_09965 PF08534 Redoxin LPH57_09995 PF00155 Aminotransferase class I and II LPH57_10000 PF00795 Carbon-nitrogen hydrolase LPH57_10010 PF01479 S4 domain LPH57_10010 PF00849 RNA pseudouridylate synthase LPH57_10015 PF04079 Segregation and condensation complex subunit ScpB LPH57_10020 PF02616 Segregation and condensation protein ScpA LPH57_10050 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_10055 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_10070 PF00795 Carbon-nitrogen hydrolase LPH57_10075 PF04371 Porphyromonas-type peptidyl-arginine deiminase LPH57_10085 PF00444 Ribosomal protein L36 LPH57_10090 PF02224 Cytidylate kinase LPH57_10095 PF00575 S1 RNA binding domain LPH57_10100 PF00216 Bacterial DNA-binding protein LPH57_10110 PF18073 Rubredoxin metal binding domain LPH57_10115 PF00953 Glycosyl transferase family 4 LPH57_10120 PF02719 Polysaccharide biosynthesis protein LPH57_10125 PF00483 Nucleotidyl transferase LPH57_10130 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LPH57_10130 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LPH57_10135 PF00571 CBS domain LPH57_10135 PF00478 IMP dehydrogenase / GMP reductase domain LPH57_10140 PF00117 Glutamine amidotransferase class-I LPH57_10140 PF02540 NAD synthase LPH57_10140 PF00958 GMP synthase C terminal domain LPH57_10185 PF09571 XcyI restriction endonuclease LPH57_10200 PF00005 ABC transporter LPH57_10200 PF17755 UvrA DNA-binding domain LPH57_10200 PF17760 UvrA interaction domain LPH57_10205 PF00829 Ribosomal prokaryotic L21 protein LPH57_10210 PF01016 Ribosomal L27 protein LPH57_10215 PF01926 50S ribosome-binding GTPase LPH57_10215 PF01018 GTP1/OBG LPH57_10220 PF01649 Ribosomal protein S20 LPH57_10225 PF03023 Lipid II flippase MurJ LPH57_10230 PF06574 FAD synthetase LPH57_10230 PF01687 Riboflavin kinase LPH57_10235 PF00133 tRNA synthetases class I (I, L, M and V) LPH57_10235 PF06827 Zinc finger found in FPG and IleRS LPH57_10235 PF08264 Anticodon-binding domain of tRNA LPH57_10240 PF01252 Signal peptidase (SPase) II LPH57_10245 PF02401 LytB protein LPH57_10310 PF13091 PLD-like domain LPH57_10310 PF13087 AAA domain LPH57_10315 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH57_10315 PF06594 Haemolysin-type calcium binding protein related domain LPH57_10380 PF00664 ABC transporter transmembrane region LPH57_10380 PF00005 ABC transporter LPH57_10380 PF03412 Peptidase C39 family LPH57_10385 PF00155 Aminotransferase class I and II LPH57_10390 PF01522 Polysaccharide deacetylase LPH57_10395 PF00462 Glutaredoxin LPH57_10405 PF03466 LysR substrate binding domain LPH57_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH57_10415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPH57_10425 PF00857 Isochorismatase family LPH57_10435 PF00107 Zinc-binding dehydrogenase LPH57_10435 PF08240 Alcohol dehydrogenase GroES-like domain LPH57_10440 PF00107 Zinc-binding dehydrogenase LPH57_10440 PF08240 Alcohol dehydrogenase GroES-like domain LPH57_10460 PF00873 AcrB/AcrD/AcrF family LPH57_10465 PF00873 AcrB/AcrD/AcrF family LPH57_10470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH57_10475 PF14489 QueF-like protein LPH57_10475 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LPH57_10490 PF00330 Aconitase family (aconitate hydratase) LPH57_10495 PF00694 Aconitase C-terminal domain LPH57_10500 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH57_10515 PF02397 Bacterial sugar transferase LPH57_10530 PF00534 Glycosyl transferases group 1 LPH57_10530 PF13439 Glycosyltransferase Family 4 LPH57_10540 PF01943 Polysaccharide biosynthesis protein LPH57_10555 PF00072 Response regulator receiver domain LPH57_10555 PF00486 Transcriptional regulatory protein, C terminal LPH57_10560 PF05958 tRNA (Uracil-5-)-methyltransferase LPH57_10565 PF01928 CYTH domain LPH57_10570 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH57_10575 PF00156 Phosphoribosyl transferase domain LPH57_10580 PF01048 Phosphorylase superfamily LPH57_10585 PF00313 'Cold-shock' DNA-binding domain LPH57_10595 PF01668 SmpB protein LPH57_10605 PF03658 RnfH family Ubiquitin LPH57_10610 PF04355 SmpA / OmlA family LPH57_10615 PF01475 Ferric uptake regulator family LPH57_10620 PF02463 RecF/RecN/SMC N terminal domain LPH57_10625 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LPH57_10625 PF01628 HrcA protein C terminal domain LPH57_10630 PF01025 GrpE LPH57_10635 PF00012 Hsp70 protein LPH57_10640 PF00684 DnaJ central domain LPH57_10640 PF01556 DnaJ C terminal domain LPH57_10640 PF00226 DnaJ domain LPH57_10650 PF00486 Transcriptional regulatory protein, C terminal LPH57_10650 PF00072 Response regulator receiver domain LPH57_10655 PF01219 Prokaryotic diacylglycerol kinase LPH57_10660 PF01790 Prolipoprotein diacylglyceryl transferase LPH57_10665 PF00303 Thymidylate synthase LPH57_10670 PF00186 Dihydrofolate reductase LPH57_10675 PF01526 Tn3 transposase DDE domain LPH57_10675 PF13700 Domain of unknown function (DUF4158) LPH57_10685 PF00072 Response regulator receiver domain LPH57_10685 PF00486 Transcriptional regulatory protein, C terminal LPH57_10690 PF13492 GAF domain LPH57_10690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH57_10690 PF00512 His Kinase A (phospho-acceptor) domain LPH57_10690 PF02702 Osmosensitive K+ channel His kinase sensor domain LPH57_10690 PF13493 Domain of unknown function (DUF4118) LPH57_10695 PF02669 K+-transporting ATPase, c chain LPH57_10705 PF03814 Potassium-transporting ATPase A subunit LPH57_10720 PF00149 Calcineurin-like phosphoesterase LPH57_10725 PF04379 ApaG domain LPH57_10730 PF00398 Ribosomal RNA adenine dimethylase LPH57_10735 PF00929 Exonuclease LPH57_10740 PF01895 PhoU domain LPH57_10745 PF00005 ABC transporter LPH57_10750 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_10755 PF00528 Binding-protein-dependent transport system inner membrane component LPH57_10760 PF12849 PBP superfamily domain LPH57_10765 PF02254 TrkA-N domain LPH57_10765 PF00999 Sodium/hydrogen exchanger family LPH57_10770 PF00593 TonB dependent receptor LPH57_10770 PF07715 TonB-dependent Receptor Plug Domain LPH57_10775 PF01323 DSBA-like thioredoxin domain LPH57_10785 PF00005 ABC transporter LPH57_10785 PF12848 ABC transporter LPH57_10800 PF01066 CDP-alcohol phosphatidyltransferase LPH57_10805 PF02151 UvrB/uvrC motif LPH57_10805 PF08459 UvrC Helix-hairpin-helix N-terminal LPH57_10805 PF01541 GIY-YIG catalytic domain LPH57_10810 PF01451 Low molecular weight phosphotyrosine protein phosphatase LPH57_10815 PF02348 Cytidylyltransferase LPH57_10820 PF10609 NUBPL iron-transfer P-loop NTPase LPH57_10825 PF00202 Aminotransferase class-III LPH57_10835 PF00490 Delta-aminolevulinic acid dehydratase LPH57_10845 PF12146 Serine aminopeptidase, S33 LPH57_10860 PF13932 GidA associated domain LPH57_10860 PF01134 Glucose inhibited division protein A LPH57_10880 PF13649 Methyltransferase domain LPH57_10900 PF02649 Type I GTP cyclohydrolase folE2 LPH57_10905 PF00132 Bacterial transferase hexapeptide (six repeats) LPH57_10910 PF00873 AcrB/AcrD/AcrF family LPH57_10915 PF00529 HlyD membrane-fusion protein of T1SS LPH57_10915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH57_10920 PF05088 Bacterial NAD-glutamate dehydrogenase LPH57_10925 PF01513 ATP-NAD kinase LPH57_10945 PF12706 Beta-lactamase superfamily domain LPH57_10955 PF00929 Exonuclease LPH57_10955 PF08411 Exonuclease C-terminal LPH57_10975 PF00999 Sodium/hydrogen exchanger family LPH57_10985 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LPH57_10995 PF01812 5-formyltetrahydrofolate cyclo-ligase family LPH57_11015 PF03695 Uncharacterised protein family (UPF0149) LPH57_11020 PF00557 Metallopeptidase family M24 LPH57_11020 PF05195 Aminopeptidase P, N-terminal domain LPH57_11025 PF00293 NUDIX domain LPH57_11060 PF01063 Amino-transferase class IV LPH57_11075 PF02954 Bacterial regulatory protein, Fis family LPH57_11085 PF01381 Helix-turn-helix LPH57_11100 PF00535 Glycosyl transferase family 2 LPH57_11110 PF00925 GTP cyclohydrolase II LPH57_11120 PF08534 Redoxin LPH57_11145 PF00959 Phage lysozyme LPH57_11165 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH57_11165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH57_11165 PF00476 DNA polymerase family A LPH57_11165 PF01612 3'-5' exonuclease LPH57_11190 PF07963 Prokaryotic N-terminal methylation motif LPH57_11190 PF00114 Pilin (bacterial filament) LPH57_11205 PF16123 Hydroxyacylglutathione hydrolase C-terminus LPH57_11205 PF00753 Metallo-beta-lactamase superfamily LPH57_11215 PF00075 RNase H LPH57_11220 PF00929 Exonuclease LPH57_11240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LPH57_11250 PF13632 Glycosyl transferase family group 2 LPH57_11255 PF02230 Phospholipase/Carboxylesterase LPH57_11260 PF06580 Histidine kinase LPH57_11260 PF07694 5TMR of 5TMR-LYT LPH57_11265 PF00072 Response regulator receiver domain LPH57_11265 PF04397 LytTr DNA-binding domain LPH57_11270 PF03900 Porphobilinogen deaminase, C-terminal domain LPH57_11270 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LPH57_11290 PF00437 Type II/IV secretion system protein LPH57_11295 PF00437 Type II/IV secretion system protein LPH57_11310 PF00535 Glycosyl transferase family 2 LPH57_11320 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH57_11320 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH57_11335 PF09924 Uncharacterised conserved protein (DUF2156) LPH57_11335 PF03706 Lysylphosphatidylglycerol synthase TM region LPH57_11340 PF01042 Endoribonuclease L-PSP LPH57_11355 PF01430 Hsp33 protein LPH57_11360 PF00912 Transglycosylase LPH57_11365 PF01624 MutS domain I LPH57_11365 PF05188 MutS domain II LPH57_11365 PF05192 MutS domain III LPH57_11365 PF05190 MutS family domain IV LPH57_11365 PF00488 MutS domain V LPH57_11370 PF01168 Alanine racemase, N-terminal domain LPH57_11385 PF02237 Biotin protein ligase C terminal domain LPH57_11385 PF03099 Biotin/lipoate A/B protein ligase family LPH57_11385 PF08279 HTH domain LPH57_11390 PF03309 Type III pantothenate kinase LPH57_11420 PF01183 Glycosyl hydrolases family 25 LPH57_11440 PF01381 Helix-turn-helix LPH57_11450 PF00114 Pilin (bacterial filament) LPH57_11450 PF07963 Prokaryotic N-terminal methylation motif LPH57_11550 PF00589 Phage integrase family LPH57_11565 PF00959 Phage lysozyme LPH57_11580 PF00574 Clp protease LPH57_11620 PF01022 Bacterial regulatory protein, arsR family LPH57_11635 PF00873 AcrB/AcrD/AcrF family LPH57_11660 PF00581 Rhodanese-like domain LPH57_11665 PF02556 Preprotein translocase subunit SecB LPH57_11670 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LPH57_11670 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LPH57_11700 PF12169 DNA polymerase III subunits gamma and tau domain III LPH57_11700 PF12170 DNA polymerase III tau subunit V interacting with alpha LPH57_11705 PF02575 YbaB/EbfC DNA-binding family LPH57_11710 PF13662 Toprim domain LPH57_11710 PF02132 RecR protein LPH57_11715 PF01230 HIT domain LPH57_11725 PF01841 Transglutaminase-like superfamily LPH57_11725 PF11992 Domain of unknown function (DUF3488) LPH57_11725 PF13559 Domain of unknown function (DUF4129) LPH57_11735 PF17863 AAA lid domain LPH57_11735 PF07726 ATPase family associated with various cellular activities (AAA) LPH57_11745 PF02620 Large ribosomal RNA subunit accumulation protein YceD LPH57_11750 PF01783 Ribosomal L32p protein family LPH57_11755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH57_11755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH57_11770 PF00553 Cellulose binding domain LPH57_11770 PF00041 Fibronectin type III domain LPH57_11770 PF01341 Glycosyl hydrolases family 6 LPH57_11775 PF00682 HMGL-like LPH57_11775 PF08502 LeuA allosteric (dimerisation) domain LPH57_11780 PF00291 Pyridoxal-phosphate dependent enzyme LPH57_11790 PF00205 Thiamine pyrophosphate enzyme, central domain LPH57_11790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LPH57_11790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LPH57_11795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LPH57_11795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LPH57_11800 PF11818 C-terminal domain of tail specific protease (DUF3340) LPH57_11800 PF00595 PDZ domain LPH57_11800 PF03572 Peptidase family S41 LPH57_11800 PF17804 Tail specific protease N-terminal domain LPH57_11805 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LPH57_11810 PF02566 OsmC-like protein LPH57_11815 PF03969 AFG1-like ATPase LPH57_11820 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH57_11825 PF02492 CobW/HypB/UreG, nucleotide-binding domain LPH57_11825 PF07683 Cobalamin synthesis protein cobW C-terminal domain LPH57_11835 PF00551 Formyl transferase LPH57_11845 PF03109 ABC1 family LPH57_11855 PF12241 Trans-2-enoyl-CoA reductase catalytic region LPH57_11855 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LPH57_11855 PF07055 Enoyl reductase FAD binding domain LPH57_11875 PF00881 Nitroreductase family LPH57_11880 PF04264 YceI-like domain LPH57_11885 PF02673 Bacitracin resistance protein BacA LPH57_11890 PF00120 Glutamine synthetase, catalytic domain LPH57_11890 PF03951 Glutamine synthetase, beta-Grasp domain LPH57_11895 PF00543 Nitrogen regulatory protein P-II LPH57_11900 PF00909 Ammonium Transporter Family LPH57_11915 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LPH57_11915 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LPH57_11920 PF02910 Fumarate reductase flavoprotein C-term LPH57_11920 PF00890 FAD binding domain LPH57_11925 PF02445 Quinolinate synthetase A protein LPH57_11930 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH57_11930 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH57_11935 PF01026 TatD related DNase LPH57_11960 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LPH57_11960 PF00171 Aldehyde dehydrogenase family LPH57_11960 PF01619 Proline dehydrogenase LPH57_11960 PF14850 DNA-binding domain of Proline dehydrogenase LPH57_11995 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPH57_12015 PF04335 VirB8 protein LPH57_12025 PF03743 Bacterial conjugation TrbI-like protein LPH57_12030 PF00437 Type II/IV secretion system protein LPH57_12035 PF02534 Type IV secretory system Conjugative DNA transfer LPH57_12095 PF02796 Helix-turn-helix domain of resolvase LPH57_12095 PF00239 Resolvase, N terminal domain LPH57_12135 PF07282 Putative transposase DNA-binding domain LPH57_12135 PF12323 Helix-turn-helix domain LPH57_12135 PF01385 Probable transposase LPH57_12150 PF08681 Protein of unknown function (DUF1778)