locus-tag class description LPH42_00005 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LPH42_00010 PF04221 RelB antitoxin LPH42_00085 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LPH42_00140 PF06508 Queuosine biosynthesis protein QueC LPH42_00145 PF02938 GAD domain LPH42_00145 PF00152 tRNA synthetases class II (D, K and N) LPH42_00145 PF01336 OB-fold nucleic acid binding domain LPH42_00165 PF05681 Fumarate hydratase (Fumerase) LPH42_00165 PF05683 Fumarase C-terminus LPH42_00185 PF01648 4'-phosphopantetheinyl transferase superfamily LPH42_00190 PF02527 rRNA small subunit methyltransferase G LPH42_00195 PF02779 Transketolase, pyrimidine binding domain LPH42_00195 PF02780 Transketolase, C-terminal domain LPH42_00195 PF00456 Transketolase, thiamine diphosphate binding domain LPH42_00200 PF00375 Sodium:dicarboxylate symporter family LPH42_00210 PF01625 Peptide methionine sulfoxide reductase LPH42_00225 PF01432 Peptidase family M3 LPH42_00230 PF06903 VirK protein LPH42_00235 PF02875 Mur ligase family, glutamate ligase domain LPH42_00235 PF08245 Mur ligase middle domain LPH42_00250 PF00156 Phosphoribosyl transferase domain LPH42_00260 PF00072 Response regulator receiver domain LPH42_00260 PF01339 CheB methylesterase LPH42_00265 PF01584 CheW-like domain LPH42_00265 PF02895 Signal transducing histidine kinase, homodimeric domain LPH42_00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_00265 PF01627 Hpt domain LPH42_00265 PF00072 Response regulator receiver domain LPH42_00270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPH42_00270 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LPH42_00275 PF01584 CheW-like domain LPH42_00280 PF00072 Response regulator receiver domain LPH42_00285 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LPH42_00285 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LPH42_00300 PF05746 DALR anticodon binding domain LPH42_00300 PF02092 Glycyl-tRNA synthetase beta subunit LPH42_00305 PF02091 Glycyl-tRNA synthetase alpha subunit LPH42_00310 PF00795 Carbon-nitrogen hydrolase LPH42_00310 PF02540 NAD synthase LPH42_00330 PF03692 Putative zinc- or iron-chelating domain LPH42_00340 PF00561 alpha/beta hydrolase fold LPH42_00350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH42_00350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH42_00360 PF00588 SpoU rRNA Methylase family LPH42_00370 PF01808 AICARFT/IMPCHase bienzyme LPH42_00370 PF02142 MGS-like domain LPH42_00375 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LPH42_00375 PF02843 Phosphoribosylglycinamide synthetase, C domain LPH42_00375 PF02844 Phosphoribosylglycinamide synthetase, N domain LPH42_00395 PF12805 FUSC-like inner membrane protein yccS LPH42_00405 PF03186 CobD/Cbib protein LPH42_00410 PF05658 Head domain of trimeric autotransporter adhesin LPH42_00410 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH42_00410 PF03895 YadA-like membrane anchor domain LPH42_00415 PF01227 GTP cyclohydrolase I LPH42_00425 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_00430 PF00588 SpoU rRNA Methylase family LPH42_00430 PF08032 RNA 2'-O ribose methyltransferase substrate binding LPH42_00435 PF00773 RNB domain LPH42_00435 PF17876 Cold shock domain LPH42_00435 PF08461 Ribonuclease R winged-helix domain LPH42_00435 PF08206 Ribonuclease B OB domain LPH42_00435 PF00575 S1 RNA binding domain LPH42_00445 PF00959 Phage lysozyme LPH42_00515 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH42_00520 PF07690 Major Facilitator Superfamily LPH42_00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_00525 PF03466 LysR substrate binding domain LPH42_00540 PF01161 Phosphatidylethanolamine-binding protein LPH42_00545 PF00719 Inorganic pyrophosphatase LPH42_00550 PF00085 Thioredoxin LPH42_00560 PF08264 Anticodon-binding domain of tRNA LPH42_00560 PF00133 tRNA synthetases class I (I, L, M and V) LPH42_00560 PF13603 Leucyl-tRNA synthetase, Domain 2 LPH42_00575 PF01467 Cytidylyltransferase-like LPH42_00590 PF13406 Transglycosylase SLT domain LPH42_00595 PF05036 Sporulation related domain LPH42_00595 PF03330 Lytic transglycolase LPH42_00700 PF05860 haemagglutination activity domain LPH42_00700 PF15605 Bacterial toxin 28 LPH42_00700 PF04829 Pre-toxin domain with VENN motif LPH42_00700 PF13332 Hemagglutinin repeat LPH42_00730 PF04829 Pre-toxin domain with VENN motif LPH42_00730 PF13332 Hemagglutinin repeat LPH42_00730 PF05860 haemagglutination activity domain LPH42_00735 PF04829 Pre-toxin domain with VENN motif LPH42_00735 PF13018 Extended Signal Peptide of Type V secretion system LPH42_00735 PF05860 haemagglutination activity domain LPH42_00735 PF13332 Hemagglutinin repeat LPH42_00830 PF13332 Hemagglutinin repeat LPH42_00830 PF05860 haemagglutination activity domain LPH42_00830 PF15605 Bacterial toxin 28 LPH42_00830 PF04829 Pre-toxin domain with VENN motif LPH42_00830 PF15605 Bacterial toxin 28 LPH42_00830 PF05860 haemagglutination activity domain LPH42_00830 PF13332 Hemagglutinin repeat LPH42_00830 PF04829 Pre-toxin domain with VENN motif LPH42_00835 PF04829 Pre-toxin domain with VENN motif LPH42_00835 PF05860 haemagglutination activity domain LPH42_00835 PF13332 Hemagglutinin repeat LPH42_00835 PF13018 Extended Signal Peptide of Type V secretion system LPH42_00850 PF01810 LysE type translocator LPH42_00870 PF01132 Elongation factor P (EF-P) OB domain LPH42_00870 PF09285 Elongation factor P, C-terminal LPH42_00870 PF08207 Elongation factor P (EF-P) KOW-like domain LPH42_00875 PF02913 FAD linked oxidases, C-terminal domain LPH42_00875 PF01565 FAD binding domain LPH42_00880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPH42_00880 PF01842 ACT domain LPH42_00880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LPH42_00885 PF13520 Amino acid permease LPH42_00890 PF13520 Amino acid permease LPH42_00895 PF00596 Class II Aldolase and Adducin N-terminal domain LPH42_00900 PF03079 ARD/ARD' family LPH42_00930 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LPH42_00930 PF01502 Phosphoribosyl-AMP cyclohydrolase LPH42_00935 PF00977 Histidine biosynthesis protein LPH42_00940 PF00977 Histidine biosynthesis protein LPH42_00945 PF00117 Glutamine amidotransferase class-I LPH42_00950 PF00475 Imidazoleglycerol-phosphate dehydratase LPH42_00955 PF00155 Aminotransferase class I and II LPH42_00960 PF00815 Histidinol dehydrogenase LPH42_00965 PF01634 ATP phosphoribosyltransferase LPH42_00965 PF08029 HisG, C-terminal domain LPH42_00980 PF03129 Anticodon binding domain LPH42_00980 PF13393 Histidyl-tRNA synthetase LPH42_00990 PF00291 Pyridoxal-phosphate dependent enzyme LPH42_00990 PF14821 Threonine synthase N terminus LPH42_00995 PF00288 GHMP kinases N terminal domain LPH42_00995 PF08544 GHMP kinases C terminal LPH42_01000 PF00696 Amino acid kinase family LPH42_01000 PF13840 ACT domain LPH42_01000 PF00742 Homoserine dehydrogenase LPH42_01000 PF03447 Homoserine dehydrogenase, NAD binding domain LPH42_01000 PF01842 ACT domain LPH42_01010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH42_01010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH42_01015 PF03652 Holliday junction resolvase LPH42_01020 PF02622 Uncharacterized ACR, COG1678 LPH42_01025 PF07943 Penicillin-binding protein 5, C-terminal domain LPH42_01025 PF00768 D-alanyl-D-alanine carboxypeptidase LPH42_01030 PF00141 Peroxidase LPH42_01035 PF00226 DnaJ domain LPH42_01035 PF01556 DnaJ C terminal domain LPH42_01045 PF06832 Penicillin-Binding Protein C-terminus Family LPH42_01045 PF00912 Transglycosylase LPH42_01045 PF00905 Penicillin binding protein transpeptidase domain LPH42_01050 PF07715 TonB-dependent Receptor Plug Domain LPH42_01050 PF00593 TonB dependent receptor LPH42_01070 PF04542 Sigma-70 region 2 LPH42_01070 PF08281 Sigma-70, region 4 LPH42_01080 PF13180 PDZ domain LPH42_01085 PF06421 GTP-binding protein LepA C-terminus LPH42_01085 PF03144 Elongation factor Tu domain 2 LPH42_01085 PF00009 Elongation factor Tu GTP binding domain LPH42_01085 PF00679 Elongation factor G C-terminus LPH42_01090 PF10502 Signal peptidase, peptidase S26 LPH42_01100 PF00035 Double-stranded RNA binding motif LPH42_01100 PF14622 Ribonuclease-III-like LPH42_01105 PF01926 50S ribosome-binding GTPase LPH42_01105 PF07650 KH domain LPH42_01110 PF11967 Recombination protein O N terminal LPH42_01110 PF02565 Recombination protein O C terminal LPH42_01115 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LPH42_01115 PF02780 Transketolase, C-terminal domain LPH42_01115 PF02779 Transketolase, pyrimidine binding domain LPH42_01125 PF00474 Sodium:solute symporter family LPH42_01135 PF16177 Acetyl-coenzyme A synthetase N-terminus LPH42_01135 PF00501 AMP-binding enzyme LPH42_01135 PF13193 AMP-binding enzyme C-terminal domain LPH42_01140 PF02659 Putative manganese efflux pump LPH42_01145 PF00106 short chain dehydrogenase LPH42_01160 PF13360 PQQ-like domain LPH42_01165 PF07676 WD40-like Beta Propeller Repeat LPH42_01165 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPH42_01165 PF00326 Prolyl oligopeptidase family LPH42_01170 PF03169 OPT oligopeptide transporter protein LPH42_01175 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LPH42_01175 PF01266 FAD dependent oxidoreductase LPH42_01180 PF00230 Major intrinsic protein LPH42_01185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPH42_01185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPH42_01200 PF08267 Cobalamin-independent synthase, N-terminal domain LPH42_01200 PF01717 Cobalamin-independent synthase, Catalytic domain LPH42_01205 PF02677 Epoxyqueuosine reductase QueH LPH42_01215 PF00501 AMP-binding enzyme LPH42_01225 PF00535 Glycosyl transferase family 2 LPH42_01230 PF01370 NAD dependent epimerase/dehydratase family LPH42_01235 PF17762 HTH domain found in ParB protein LPH42_01235 PF02195 ParB-like nuclease domain LPH42_01240 PF13614 AAA domain LPH42_01255 PF02403 Seryl-tRNA synthetase N-terminal domain LPH42_01255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH42_01260 PF03544 Gram-negative bacterial TonB protein C-terminal LPH42_01265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH42_01270 PF01842 ACT domain LPH42_01270 PF01817 Chorismate mutase type II LPH42_01270 PF00800 Prephenate dehydratase LPH42_01275 PF00266 Aminotransferase class-V LPH42_01285 PF12679 ABC-2 family transporter protein LPH42_01290 PF00005 ABC transporter LPH42_01320 PF00440 Bacterial regulatory proteins, tetR family LPH42_01325 PF01209 ubiE/COQ5 methyltransferase family LPH42_01335 PF00294 pfkB family carbohydrate kinase LPH42_01340 PF07690 Major Facilitator Superfamily LPH42_01350 PF04102 SlyX LPH42_01355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH42_01355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH42_01355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH42_01360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH42_01360 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH42_01365 PF00255 Glutathione peroxidase LPH42_01375 PF00005 ABC transporter LPH42_01390 PF10415 Fumarase C C-terminus LPH42_01390 PF00206 Lyase LPH42_01395 PF08328 Adenylosuccinate lyase C-terminal LPH42_01395 PF00206 Lyase LPH42_01400 PF08007 Cupin superfamily protein LPH42_01405 PF16078 2-oxoglutarate dehydrogenase N-terminus LPH42_01405 PF16870 2-oxoglutarate dehydrogenase C-terminal LPH42_01405 PF02779 Transketolase, pyrimidine binding domain LPH42_01405 PF00676 Dehydrogenase E1 component LPH42_01410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH42_01410 PF02817 e3 binding domain LPH42_01410 PF00364 Biotin-requiring enzyme LPH42_01415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH42_01415 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH42_01425 PF00899 ThiF family LPH42_01440 PF00325 Bacterial regulatory proteins, crp family LPH42_01440 PF00027 Cyclic nucleotide-binding domain LPH42_01445 PF02675 S-adenosylmethionine decarboxylase LPH42_01450 PF03232 Ubiquinone biosynthesis protein COQ7 LPH42_01455 PF00572 Ribosomal protein L13 LPH42_01460 PF00380 Ribosomal protein S9/S16 LPH42_01465 PF00285 Citrate synthase, C-terminal domain LPH42_01470 PF01197 Ribosomal protein L31 LPH42_01475 PF00814 Glycoprotease family LPH42_01480 PF03466 LysR substrate binding domain LPH42_01480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_01485 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH42_01485 PF13192 Thioredoxin domain LPH42_01490 PF00578 AhpC/TSA family LPH42_01490 PF10417 C-terminal domain of 1-Cys peroxiredoxin LPH42_01495 PF13018 Extended Signal Peptide of Type V secretion system LPH42_01495 PF03895 YadA-like membrane anchor domain LPH42_01495 PF05658 Head domain of trimeric autotransporter adhesin LPH42_01495 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH42_01500 PF00263 Bacterial type II and III secretion system protein LPH42_01500 PF03958 Bacterial type II/III secretion system short domain LPH42_01510 PF10741 Type II secretion system (T2SS), protein M subtype b LPH42_01515 PF05137 Fimbrial assembly protein (PilN) LPH42_01520 PF03934 Type II secretion system (T2SS), protein K LPH42_01530 PF03934 Type II secretion system (T2SS), protein K LPH42_01540 PF07963 Prokaryotic N-terminal methylation motif LPH42_01545 PF12019 Type II transport protein GspH LPH42_01550 PF08334 Type II secretion system (T2SS), protein G LPH42_01555 PF00482 Type II secretion system (T2SS), protein F LPH42_01560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH42_01560 PF00437 Type II/IV secretion system protein LPH42_01580 PF17827 PrmC N-terminal domain LPH42_01580 PF05175 Methyltransferase small domain LPH42_01590 PF00561 alpha/beta hydrolase fold LPH42_01605 PF04055 Radical SAM superfamily LPH42_01605 PF06969 HemN C-terminal domain LPH42_01610 PF01725 Ham1 family LPH42_01615 PF01138 3' exoribonuclease family, domain 1 LPH42_01615 PF03725 3' exoribonuclease family, domain 2 LPH42_01620 PF03755 YicC-like family, N-terminal region LPH42_01620 PF08340 Domain of unknown function (DUF1732) LPH42_01625 PF00625 Guanylate kinase LPH42_01630 PF01192 RNA polymerase Rpb6 LPH42_01635 PF00009 Elongation factor Tu GTP binding domain LPH42_01640 PF01507 Phosphoadenosine phosphosulfate reductase family LPH42_01645 PF00175 Oxidoreductase NAD-binding domain LPH42_01645 PF00258 Flavodoxin LPH42_01645 PF00667 FAD binding domain LPH42_01650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LPH42_01650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LPH42_01655 PF01507 Phosphoadenosine phosphosulfate reductase family LPH42_01680 PF13369 Transglutaminase-like superfamily LPH42_01715 PF11838 ERAP1-like C-terminal domain LPH42_01715 PF01433 Peptidase family M1 domain LPH42_01720 PF01209 ubiE/COQ5 methyltransferase family LPH42_01730 PF07724 AAA domain (Cdc48 subfamily) LPH42_01730 PF10431 C-terminal, D2-small domain, of ClpB protein LPH42_01730 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_01735 PF00227 Proteasome subunit LPH42_01745 PF02899 Phage integrase, N-terminal SAM-like domain LPH42_01745 PF00589 Phage integrase family LPH42_01755 PF01678 Diaminopimelate epimerase LPH42_01765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LPH42_01765 PF00326 Prolyl oligopeptidase family LPH42_01775 PF02082 Transcriptional regulator LPH42_01780 PF01458 Uncharacterized protein family (UPF0051) LPH42_01785 PF00005 ABC transporter LPH42_01790 PF01458 Uncharacterized protein family (UPF0051) LPH42_01795 PF00266 Aminotransferase class-V LPH42_01800 PF00355 Rieske [2Fe-2S] domain LPH42_01805 PF13439 Glycosyltransferase Family 4 LPH42_01805 PF00534 Glycosyl transferases group 1 LPH42_01810 PF01522 Polysaccharide deacetylase LPH42_01815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH42_01815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH42_01815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH42_01815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH42_01820 PF01039 Carboxyl transferase domain LPH42_01820 PF17848 Acetyl-coA carboxylase zinc finger domain LPH42_01835 PF01979 Amidohydrolase family LPH42_01840 PF01380 SIS domain LPH42_01850 PF07690 Major Facilitator Superfamily LPH42_01860 PF02685 Glucokinase LPH42_01885 PF00512 His Kinase A (phospho-acceptor) domain LPH42_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_01900 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LPH42_01905 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_01905 PF16193 AAA C-terminal domain LPH42_01905 PF12002 MgsA AAA+ ATPase C terminal LPH42_01910 PF03548 Outer membrane lipoprotein carrier protein LolA LPH42_01925 PF01580 FtsK/SpoIIIE family LPH42_01925 PF09397 Ftsk gamma domain LPH42_01925 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LPH42_01925 PF17854 FtsK alpha domain LPH42_01930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH42_01940 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LPH42_01945 PF01176 Translation initiation factor 1A / IF-1 LPH42_01950 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_01950 PF07724 AAA domain (Cdc48 subfamily) LPH42_01950 PF17871 AAA lid domain LPH42_01950 PF02861 Clp amino terminal domain, pathogenicity island component LPH42_01950 PF10431 C-terminal, D2-small domain, of ClpB protein LPH42_01955 PF02617 ATP-dependent Clp protease adaptor protein ClpS LPH42_01960 PF00293 NUDIX domain LPH42_01970 PF04356 Protein of unknown function (DUF489) LPH42_01985 PF01323 DSBA-like thioredoxin domain LPH42_01995 PF01926 50S ribosome-binding GTPase LPH42_02000 PF04107 Glutamate-cysteine ligase family 2(GCS2) LPH42_02010 PF00202 Aminotransferase class-III LPH42_02015 PF00520 Ion transport protein LPH42_02015 PF00027 Cyclic nucleotide-binding domain LPH42_02020 PF02899 Phage integrase, N-terminal SAM-like domain LPH42_02020 PF00589 Phage integrase family LPH42_02025 PF13098 Thioredoxin-like domain LPH42_02025 PF10411 Disulfide bond isomerase protein N-terminus LPH42_02030 PF02769 AIR synthase related protein, C-terminal domain LPH42_02030 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LPH42_02030 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LPH42_02040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH42_02050 PF00571 CBS domain LPH42_02050 PF01380 SIS domain LPH42_02070 PF00005 ABC transporter LPH42_02070 PF12399 Branched-chain amino acid ATP-binding cassette transporter LPH42_02075 PF00309 Sigma-54 factor, Activator interacting domain (AID) LPH42_02075 PF04963 Sigma-54 factor, core binding domain LPH42_02075 PF04552 Sigma-54, DNA binding domain LPH42_02080 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LPH42_02085 PF02603 HPr Serine kinase N terminus LPH42_02085 PF07475 HPr Serine kinase C-terminal domain LPH42_02090 PF03668 P-loop ATPase protein family LPH42_02100 PF00381 PTS HPr component phosphorylation site LPH42_02105 PF05524 PEP-utilising enzyme, N-terminal LPH42_02105 PF00391 PEP-utilising enzyme, mobile domain LPH42_02105 PF02896 PEP-utilising enzyme, TIM barrel domain LPH42_02110 PF00571 CBS domain LPH42_02110 PF01769 Divalent cation transporter LPH42_02110 PF03448 MgtE intracellular N domain LPH42_02115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPH42_02150 PF04542 Sigma-70 region 2 LPH42_02150 PF08281 Sigma-70, region 4 LPH42_02160 PF00082 Subtilase family LPH42_02165 PF00436 Single-strand binding protein family LPH42_02170 PF00348 Polyprenyl synthetase LPH42_02175 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LPH42_02175 PF06481 COX Aromatic Rich Motif LPH42_02180 PF00115 Cytochrome C and Quinol oxidase polypeptide I LPH42_02185 PF00510 Cytochrome c oxidase subunit III LPH42_02190 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LPH42_02195 PF02347 Glycine cleavage system P-protein LPH42_02205 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LPH42_02205 PF00271 Helicase conserved C-terminal domain LPH42_02205 PF04408 Helicase associated domain (HA2) LPH42_02205 PF11898 Domain of unknown function (DUF3418) LPH42_02205 PF00270 DEAD/DEAH box helicase LPH42_02210 PF00210 Ferritin-like domain LPH42_02215 PF16124 RecQ zinc-binding LPH42_02215 PF00570 HRDC domain LPH42_02215 PF00271 Helicase conserved C-terminal domain LPH42_02215 PF00270 DEAD/DEAH box helicase LPH42_02215 PF09382 RQC domain LPH42_02235 PF00296 Luciferase-like monooxygenase LPH42_02240 PF18073 Rubredoxin metal binding domain LPH42_02255 PF00290 Tryptophan synthase alpha chain LPH42_02260 PF00291 Pyridoxal-phosphate dependent enzyme LPH42_02265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LPH42_02270 PF01416 tRNA pseudouridine synthase LPH42_02280 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH42_02280 PF02774 Semialdehyde dehydrogenase, dimerisation domain LPH42_02290 PF01264 Chorismate synthase LPH42_02295 PF05175 Methyltransferase small domain LPH42_02305 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH42_02305 PF06594 Haemolysin-type calcium binding protein related domain LPH42_02360 PF00348 Polyprenyl synthetase LPH42_02365 PF02609 Exonuclease VII small subunit LPH42_02370 PF01171 PP-loop family LPH42_02370 PF11734 TilS substrate C-terminal domain LPH42_02370 PF09179 TilS substrate binding domain LPH42_02380 PF00375 Sodium:dicarboxylate symporter family LPH42_02385 PF00877 NlpC/P60 family LPH42_02390 PF00877 NlpC/P60 family LPH42_02395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH42_02400 PF04235 Protein of unknown function (DUF418) LPH42_02425 PF10576 Iron-sulfur binding domain of endonuclease III LPH42_02425 PF00633 Helix-hairpin-helix motif LPH42_02425 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH42_02440 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH42_02440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH42_02445 PF00293 NUDIX domain LPH42_02475 PF01488 Shikimate / quinate 5-dehydrogenase LPH42_02475 PF08501 Shikimate dehydrogenase substrate binding domain LPH42_02475 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LPH42_02480 PF02581 Thiamine monophosphate synthase LPH42_02480 PF08543 Phosphomethylpyrimidine kinase LPH42_02500 PF02683 Cytochrome C biogenesis protein transmembrane region LPH42_02500 PF11412 Disulphide bond corrector protein DsbC LPH42_02505 PF03091 CutA1 divalent ion tolerance protein LPH42_02510 PF00166 Chaperonin 10 Kd subunit LPH42_02515 PF00118 TCP-1/cpn60 chaperonin family LPH42_02540 PF01370 NAD dependent epimerase/dehydratase family LPH42_02545 PF01370 NAD dependent epimerase/dehydratase family LPH42_02550 PF16363 GDP-mannose 4,6 dehydratase LPH42_02565 PF00291 Pyridoxal-phosphate dependent enzyme LPH42_02585 PF00593 TonB dependent receptor LPH42_02585 PF07715 TonB-dependent Receptor Plug Domain LPH42_02590 PF13640 2OG-Fe(II) oxygenase superfamily LPH42_02590 PF18331 PKHD-type hydroxylase C-terminal domain LPH42_02610 PF02424 ApbE family LPH42_02615 PF00667 FAD binding domain LPH42_02615 PF00175 Oxidoreductase NAD-binding domain LPH42_02615 PF00258 Flavodoxin LPH42_02630 PF01636 Phosphotransferase enzyme family LPH42_02635 PF00483 Nucleotidyl transferase LPH42_02640 PF00308 Bacterial dnaA protein LPH42_02645 PF01594 AI-2E family transporter LPH42_02655 PF02769 AIR synthase related protein, C-terminal domain LPH42_02655 PF00586 AIR synthase related protein, N-terminal domain LPH42_02660 PF00551 Formyl transferase LPH42_02675 PF02223 Thymidylate kinase LPH42_02680 PF05649 Peptidase family M13 LPH42_02680 PF01431 Peptidase family M13 LPH42_02685 PF07977 FabA-like domain LPH42_02690 PF01171 PP-loop family LPH42_02695 PF04381 Putative exonuclease, RdgC LPH42_02705 PF00762 Ferrochelatase LPH42_02715 PF02416 mttA/Hcf106 family LPH42_02720 PF02416 mttA/Hcf106 family LPH42_02725 PF00902 Sec-independent protein translocase protein (TatC) LPH42_02735 PF00117 Glutamine amidotransferase class-I LPH42_02735 PF02540 NAD synthase LPH42_02735 PF00958 GMP synthase C terminal domain LPH42_02740 PF00127 Copper binding proteins, plastocyanin/azurin family LPH42_02745 PF03193 RsgA GTPase LPH42_02750 PF02021 Uncharacterised protein family UPF0102 LPH42_02755 PF04348 LppC putative lipoprotein LPH42_02760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH42_02765 PF00593 TonB dependent receptor LPH42_02765 PF07715 TonB-dependent Receptor Plug Domain LPH42_02770 PF01588 Putative tRNA binding domain LPH42_02770 PF09334 tRNA synthetases class I (M) LPH42_02780 PF04060 Putative Fe-S cluster LPH42_02825 PF01546 Peptidase family M20/M25/M40 LPH42_02825 PF07687 Peptidase dimerisation domain LPH42_02850 PF05567 Neisseria PilC beta-propeller domain LPH42_02875 PF03641 Possible lysine decarboxylase LPH42_02875 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LPH42_02875 PF11892 Domain of unknown function (DUF3412) LPH42_02885 PF00563 EAL domain LPH42_02885 PF12792 CSS motif domain associated with EAL LPH42_02895 PF00899 ThiF family LPH42_02900 PF01926 50S ribosome-binding GTPase LPH42_02900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LPH42_02905 PF13360 PQQ-like domain LPH42_02905 PF01011 PQQ enzyme repeat LPH42_02925 PF04055 Radical SAM superfamily LPH42_02930 PF00334 Nucleoside diphosphate kinase LPH42_02935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LPH42_02935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LPH42_02940 PF00709 Adenylosuccinate synthetase LPH42_02950 PF01145 SPFH domain / Band 7 family LPH42_02955 PF01145 SPFH domain / Band 7 family LPH42_02955 PF12221 Bacterial membrane protein N terminal LPH42_02960 PF00107 Zinc-binding dehydrogenase LPH42_02960 PF08240 Alcohol dehydrogenase GroES-like domain LPH42_02965 PF00072 Response regulator receiver domain LPH42_02980 PF03129 Anticodon binding domain LPH42_02980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH42_02980 PF04073 Aminoacyl-tRNA editing domain LPH42_02990 PF01066 CDP-alcohol phosphatidyltransferase LPH42_03000 PF00583 Acetyltransferase (GNAT) family LPH42_03015 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH42_03015 PF14310 Fibronectin type III-like domain LPH42_03015 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH42_03020 PF00924 Mechanosensitive ion channel LPH42_03025 PF02152 Dihydroneopterin aldolase LPH42_03030 PF00814 Glycoprotease family LPH42_03035 PF01165 Ribosomal protein S21 LPH42_03040 PF09424 Yqey-like protein LPH42_03045 PF03631 Virulence factor BrkB LPH42_03050 PF01807 CHC2 zinc finger LPH42_03050 PF08278 DNA primase DnaG DnaB-binding LPH42_03050 PF10410 DnaB-helicase binding domain of primase LPH42_03050 PF08275 DNA primase catalytic core, N-terminal domain LPH42_03060 PF00579 tRNA synthetases class I (W and Y) LPH42_03065 PF13538 UvrD-like helicase C-terminal domain LPH42_03070 PF12705 PD-(D/E)XK nuclease superfamily LPH42_03070 PF00580 UvrD/REP helicase N-terminal domain LPH42_03070 PF13361 UvrD-like helicase C-terminal domain LPH42_03075 PF17946 RecC C-terminal domain LPH42_03080 PF00005 ABC transporter LPH42_03085 PF02405 Permease MlaE LPH42_03090 PF02470 MlaD protein LPH42_03095 PF05494 MlaC protein LPH42_03105 PF04333 MlaA lipoprotein LPH42_03110 PF02646 RmuC family LPH42_03115 PF00005 ABC transporter LPH42_03130 PF13520 Amino acid permease LPH42_03140 PF17785 PUA-like domain LPH42_03140 PF10672 S-adenosylmethionine-dependent methyltransferase LPH42_03145 PF03741 Integral membrane protein TerC family LPH42_03160 PF01521 Iron-sulphur cluster biosynthesis LPH42_03175 PF00486 Transcriptional regulatory protein, C terminal LPH42_03175 PF00072 Response regulator receiver domain LPH42_03180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH42_03180 PF01627 Hpt domain LPH42_03180 PF00072 Response regulator receiver domain LPH42_03180 PF00512 His Kinase A (phospho-acceptor) domain LPH42_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_03180 PF00672 HAMP domain LPH42_03185 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH42_03185 PF00072 Response regulator receiver domain LPH42_03185 PF01627 Hpt domain LPH42_03185 PF00512 His Kinase A (phospho-acceptor) domain LPH42_03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_03185 PF00672 HAMP domain LPH42_03190 PF00210 Ferritin-like domain LPH42_03215 PF02772 S-adenosylmethionine synthetase, central domain LPH42_03215 PF00438 S-adenosylmethionine synthetase, N-terminal domain LPH42_03215 PF02773 S-adenosylmethionine synthetase, C-terminal domain LPH42_03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_03230 PF00486 Transcriptional regulatory protein, C terminal LPH42_03230 PF00072 Response regulator receiver domain LPH42_03240 PF01207 Dihydrouridine synthase (Dus) LPH42_03245 PF00593 TonB dependent receptor LPH42_03245 PF07715 TonB-dependent Receptor Plug Domain LPH42_03260 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_03260 PF07724 AAA domain (Cdc48 subfamily) LPH42_03260 PF17871 AAA lid domain LPH42_03260 PF10431 C-terminal, D2-small domain, of ClpB protein LPH42_03260 PF02861 Clp amino terminal domain, pathogenicity island component LPH42_03270 PF00301 Rubredoxin LPH42_03275 PF02581 Thiamine monophosphate synthase LPH42_03290 PF00067 Cytochrome P450 LPH42_03320 PF03796 DnaB-like helicase C terminal domain LPH42_03320 PF00772 DnaB-like helicase N terminal domain LPH42_03325 PF05736 OprF membrane domain LPH42_03325 PF00691 OmpA family LPH42_03335 PF00248 Aldo/keto reductase family LPH42_03340 PF00912 Transglycosylase LPH42_03340 PF17092 Penicillin-binding protein OB-like domain LPH42_03340 PF00905 Penicillin binding protein transpeptidase domain LPH42_03345 PF11104 Type IV pilus assembly protein PilM; LPH42_03350 PF05137 Fimbrial assembly protein (PilN) LPH42_03355 PF04350 Pilus assembly protein, PilO LPH42_03360 PF04351 Pilus assembly protein, PilP LPH42_03365 PF11741 AMIN domain LPH42_03365 PF03958 Bacterial type II/III secretion system short domain LPH42_03365 PF07660 Secretin and TonB N terminus short domain LPH42_03365 PF00263 Bacterial type II and III secretion system protein LPH42_03375 PF08019 Phosphoethanolamine transferase EptA/EptB LPH42_03375 PF00884 Sulfatase LPH42_03380 PF00067 Cytochrome P450 LPH42_03385 PF00270 DEAD/DEAH box helicase LPH42_03385 PF00271 Helicase conserved C-terminal domain LPH42_03385 PF17191 RecG wedge domain LPH42_03390 PF01042 Endoribonuclease L-PSP LPH42_03395 PF13291 ACT domain LPH42_03395 PF04607 Region found in RelA / SpoT proteins LPH42_03395 PF02824 TGS domain LPH42_03405 PF01565 FAD binding domain LPH42_03405 PF02913 FAD linked oxidases, C-terminal domain LPH42_03410 PF00691 OmpA family LPH42_03410 PF05736 OprF membrane domain LPH42_03415 PF02600 Disulfide bond formation protein DsbB LPH42_03420 PF07715 TonB-dependent Receptor Plug Domain LPH42_03420 PF00593 TonB dependent receptor LPH42_03425 PF02590 Predicted SPOUT methyltransferase LPH42_03440 PF12344 Ultra-violet resistance protein B LPH42_03440 PF00271 Helicase conserved C-terminal domain LPH42_03440 PF17757 UvrB interaction domain LPH42_03440 PF04851 Type III restriction enzyme, res subunit LPH42_03440 PF02151 UvrB/uvrC motif LPH42_03455 PF00701 Dihydrodipicolinate synthetase family LPH42_03465 PF00578 AhpC/TSA family LPH42_03470 PF13638 PIN domain LPH42_03470 PF02562 PhoH-like protein LPH42_03490 PF02769 AIR synthase related protein, C-terminal domain LPH42_03490 PF00586 AIR synthase related protein, N-terminal domain LPH42_03495 PF01029 NusB family LPH42_03500 PF00885 6,7-dimethyl-8-ribityllumazine synthase LPH42_03505 PF00925 GTP cyclohydrolase II LPH42_03505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LPH42_03510 PF00677 Lumazine binding domain LPH42_03515 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LPH42_03515 PF01872 RibD C-terminal domain LPH42_03525 PF03477 ATP cone domain LPH42_03535 PF00464 Serine hydroxymethyltransferase LPH42_03540 PF12848 ABC transporter LPH42_03540 PF00005 ABC transporter LPH42_03545 PF06039 Malate:quinone oxidoreductase (Mqo) LPH42_03550 PF04134 Protein of unknown function, DUF393 LPH42_03555 PF02578 Multi-copper polyphenol oxidoreductase laccase LPH42_03560 PF00849 RNA pseudouridylate synthase LPH42_03560 PF01479 S4 domain LPH42_03565 PF13525 Outer membrane lipoprotein LPH42_03575 PF02421 Ferrous iron transport protein B LPH42_03575 PF07670 Nucleoside recognition LPH42_03575 PF07664 Ferrous iron transport protein B C terminus LPH42_03595 PF04386 Stringent starvation protein B LPH42_03600 PF00043 Glutathione S-transferase, C-terminal domain LPH42_03600 PF02798 Glutathione S-transferase, N-terminal domain LPH42_03620 PF01464 Transglycosylase SLT domain LPH42_03625 PF00919 Uncharacterized protein family UPF0004 LPH42_03625 PF04055 Radical SAM superfamily LPH42_03625 PF01938 TRAM domain LPH42_03630 PF02562 PhoH-like protein LPH42_03635 PF02130 Uncharacterized protein family UPF0054 LPH42_03645 PF03471 Transporter associated domain LPH42_03645 PF00571 CBS domain LPH42_03675 PF04829 Pre-toxin domain with VENN motif LPH42_03675 PF05860 haemagglutination activity domain LPH42_03675 PF13332 Hemagglutinin repeat LPH42_03680 PF04829 Pre-toxin domain with VENN motif LPH42_03680 PF05860 haemagglutination activity domain LPH42_03680 PF13332 Hemagglutinin repeat LPH42_03680 PF13018 Extended Signal Peptide of Type V secretion system LPH42_03685 PF08479 POTRA domain, ShlB-type LPH42_03685 PF17287 POTRA domain LPH42_03685 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LPH42_03695 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH42_03695 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH42_03700 PF01008 Initiation factor 2 subunit family LPH42_03710 PF00152 tRNA synthetases class II (D, K and N) LPH42_03715 PF00583 Acetyltransferase (GNAT) family LPH42_03720 PF12826 Helix-hairpin-helix motif LPH42_03720 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LPH42_03720 PF00533 BRCA1 C Terminus (BRCT) domain LPH42_03720 PF01653 NAD-dependent DNA ligase adenylation domain LPH42_03720 PF03120 NAD-dependent DNA ligase OB-fold domain LPH42_03730 PF04354 ZipA, C-terminal FtsZ-binding domain LPH42_03735 PF02463 RecF/RecN/SMC N terminal domain LPH42_03740 PF01281 Ribosomal protein L9, N-terminal domain LPH42_03740 PF03948 Ribosomal protein L9, C-terminal domain LPH42_03745 PF01084 Ribosomal protein S18 LPH42_03750 PF01250 Ribosomal protein S6 LPH42_03755 PF01521 Iron-sulphur cluster biosynthesis LPH42_03760 PF01336 OB-fold nucleic acid binding domain LPH42_03760 PF00152 tRNA synthetases class II (D, K and N) LPH42_03765 PF01061 ABC-2 type transporter LPH42_03770 PF00005 ABC transporter LPH42_03780 PF01180 Dihydroorotate dehydrogenase LPH42_03785 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LPH42_03785 PF01565 FAD binding domain LPH42_03790 PF00892 EamA-like transporter family LPH42_03795 PF01569 PAP2 superfamily LPH42_03800 PF04551 GcpE protein LPH42_03810 PF00072 Response regulator receiver domain LPH42_03815 PF00889 Elongation factor TS LPH42_03820 PF00318 Ribosomal protein S2 LPH42_03835 PF00005 ABC transporter LPH42_03835 PF00664 ABC transporter transmembrane region LPH42_03855 PF02321 Outer membrane efflux protein LPH42_03860 PF12850 Calcineurin-like phosphoesterase superfamily domain LPH42_03865 PF02541 Ppx/GppA phosphatase family LPH42_03870 PF13089 Polyphosphate kinase N-terminal domain LPH42_03870 PF17941 Polyphosphate kinase C-terminal domain 1 LPH42_03870 PF13090 Polyphosphate kinase C-terminal domain 2 LPH42_03870 PF02503 Polyphosphate kinase middle domain LPH42_03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_03875 PF00512 His Kinase A (phospho-acceptor) domain LPH42_03875 PF11808 Phosphate regulon sensor protein PhoR LPH42_03875 PF00989 PAS fold LPH42_03880 PF00072 Response regulator receiver domain LPH42_03880 PF00486 Transcriptional regulatory protein, C terminal LPH42_03885 PF13181 Tetratricopeptide repeat LPH42_03885 PF01435 Peptidase family M48 LPH42_03890 PF00462 Glutaredoxin LPH42_03895 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH42_03905 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LPH42_03905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LPH42_03915 PF11953 Domain of unknown function (DUF3470) LPH42_03915 PF00037 4Fe-4S binding domain LPH42_03925 PF01106 NifU-like domain LPH42_03930 PF01329 Pterin 4 alpha carbinolamine dehydratase LPH42_03945 PF01479 S4 domain LPH42_03945 PF00849 RNA pseudouridylate synthase LPH42_03950 PF12111 Polyribonucleotide phosphorylase C terminal LPH42_03950 PF00575 S1 RNA binding domain LPH42_03950 PF10150 Ribonuclease E/G family LPH42_03955 PF00072 Response regulator receiver domain LPH42_03955 PF00196 Bacterial regulatory proteins, luxR family LPH42_03960 PF17773 UPF0176 acylphosphatase like domain LPH42_03970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH42_03970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH42_03975 PF00545 ribonuclease LPH42_03985 PF12848 ABC transporter LPH42_03985 PF16326 ABC transporter C-terminal domain LPH42_03985 PF00005 ABC transporter LPH42_03990 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LPH42_03995 PF00313 'Cold-shock' DNA-binding domain LPH42_04005 PF01435 Peptidase family M48 LPH42_04010 PF03143 Elongation factor Tu C-terminal domain LPH42_04010 PF03144 Elongation factor Tu domain 2 LPH42_04010 PF00009 Elongation factor Tu GTP binding domain LPH42_04015 PF03144 Elongation factor Tu domain 2 LPH42_04015 PF00009 Elongation factor Tu GTP binding domain LPH42_04015 PF03764 Elongation factor G, domain IV LPH42_04015 PF14492 Elongation Factor G, domain II LPH42_04015 PF00679 Elongation factor G C-terminus LPH42_04020 PF00177 Ribosomal protein S7p/S5e LPH42_04025 PF00164 Ribosomal protein S12/S23 LPH42_04030 PF04983 RNA polymerase Rpb1, domain 3 LPH42_04030 PF05000 RNA polymerase Rpb1, domain 4 LPH42_04030 PF04998 RNA polymerase Rpb1, domain 5 LPH42_04030 PF00623 RNA polymerase Rpb1, domain 2 LPH42_04030 PF04997 RNA polymerase Rpb1, domain 1 LPH42_04035 PF04563 RNA polymerase beta subunit LPH42_04035 PF04560 RNA polymerase Rpb2, domain 7 LPH42_04035 PF00562 RNA polymerase Rpb2, domain 6 LPH42_04035 PF10385 RNA polymerase beta subunit external 1 domain LPH42_04035 PF04561 RNA polymerase Rpb2, domain 2 LPH42_04035 PF04565 RNA polymerase Rpb2, domain 3 LPH42_04040 PF16320 Ribosomal protein L7/L12 dimerisation domain LPH42_04040 PF00542 Ribosomal protein L7/L12 C-terminal domain LPH42_04045 PF00466 Ribosomal protein L10 LPH42_04050 PF00687 Ribosomal protein L1p/L10e family LPH42_04055 PF03946 Ribosomal protein L11, N-terminal domain LPH42_04055 PF00298 Ribosomal protein L11, RNA binding domain LPH42_04060 PF02357 Transcription termination factor nusG LPH42_04060 PF00467 KOW motif LPH42_04065 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LPH42_04075 PF03144 Elongation factor Tu domain 2 LPH42_04075 PF00009 Elongation factor Tu GTP binding domain LPH42_04075 PF03143 Elongation factor Tu C-terminal domain LPH42_04095 PF01926 50S ribosome-binding GTPase LPH42_04095 PF06071 Protein of unknown function (DUF933) LPH42_04100 PF01195 Peptidyl-tRNA hydrolase LPH42_04105 PF14693 Ribosomal protein TL5, C-terminal domain LPH42_04105 PF01386 Ribosomal L25p family LPH42_04110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LPH42_04110 PF14572 Phosphoribosyl synthetase-associated domain LPH42_04120 PF00288 GHMP kinases N terminal domain LPH42_04120 PF08544 GHMP kinases C terminal LPH42_04125 PF03550 Outer membrane lipoprotein LolB LPH42_04135 PF01488 Shikimate / quinate 5-dehydrogenase LPH42_04135 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LPH42_04135 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LPH42_04140 PF00472 RF-1 domain LPH42_04140 PF03462 PCRF domain LPH42_04145 PF10672 S-adenosylmethionine-dependent methyltransferase LPH42_04145 PF01170 Putative RNA methylase family UPF0020 LPH42_04145 PF02926 THUMP domain LPH42_04210 PF00497 Bacterial extracellular solute-binding proteins, family 3 LPH42_04215 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_04220 PF00005 ABC transporter LPH42_04225 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_04230 PF12705 PD-(D/E)XK nuclease superfamily LPH42_04230 PF00580 UvrD/REP helicase N-terminal domain LPH42_04230 PF13361 UvrD-like helicase C-terminal domain LPH42_04240 PF01914 MarC family integral membrane protein LPH42_04245 PF00462 Glutaredoxin LPH42_04250 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LPH42_04250 PF02222 ATP-grasp domain LPH42_04255 PF00731 AIR carboxylase LPH42_04275 PF07731 Multicopper oxidase LPH42_04275 PF07732 Multicopper oxidase LPH42_04285 PF00580 UvrD/REP helicase N-terminal domain LPH42_04285 PF13361 UvrD-like helicase C-terminal domain LPH42_04295 PF04349 Periplasmic glucan biosynthesis protein, MdoG LPH42_04300 PF01343 Peptidase family S49 LPH42_04305 PF01554 MatE LPH42_04320 PF00270 DEAD/DEAH box helicase LPH42_04320 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LPH42_04320 PF18074 Primosomal protein N C-terminal domain LPH42_04320 PF17764 3′ DNA-binding domain (3′BD) LPH42_04320 PF00271 Helicase conserved C-terminal domain LPH42_04325 PF04545 Sigma-70, region 4 LPH42_04325 PF04542 Sigma-70 region 2 LPH42_04325 PF00140 Sigma-70 factor, region 1.2 LPH42_04330 PF03167 Uracil DNA glycosylase superfamily LPH42_04335 PF00072 Response regulator receiver domain LPH42_04335 PF01339 CheB methylesterase LPH42_04340 PF18075 FtsX extracellular domain LPH42_04345 PF00005 ABC transporter LPH42_04350 PF12300 ATP-dependent RNA helicase RhlB LPH42_04350 PF00271 Helicase conserved C-terminal domain LPH42_04350 PF00270 DEAD/DEAH box helicase LPH42_04355 PF00085 Thioredoxin LPH42_04360 PF07498 Rho termination factor, N-terminal domain LPH42_04360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH42_04360 PF07497 Rho termination factor, RNA-binding domain LPH42_04365 PF03971 Monomeric isocitrate dehydrogenase LPH42_04370 PF09704 CRISPR-associated protein (Cas_Cas5) LPH42_04385 PF13180 PDZ domain LPH42_04385 PF03572 Peptidase family S41 LPH42_04390 PF01551 Peptidase family M23 LPH42_04400 PF00150 Cellulase (glycosyl hydrolase family 5) LPH42_04420 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH42_04420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LPH42_04425 PF01645 Conserved region in glutamate synthase LPH42_04425 PF04898 Glutamate synthase central domain LPH42_04425 PF00310 Glutamine amidotransferases class-II LPH42_04425 PF01493 GXGXG motif LPH42_04435 PF14748 Pyrroline-5-carboxylate reductase dimerisation LPH42_04435 PF03807 NADP oxidoreductase coenzyme F420-dependent LPH42_04520 PF13332 Hemagglutinin repeat LPH42_04520 PF04829 Pre-toxin domain with VENN motif LPH42_04520 PF05860 haemagglutination activity domain LPH42_04525 PF13018 Extended Signal Peptide of Type V secretion system LPH42_04525 PF13332 Hemagglutinin repeat LPH42_04525 PF05860 haemagglutination activity domain LPH42_04525 PF04829 Pre-toxin domain with VENN motif LPH42_04565 PF18766 SWI2/SNF2 ATPase LPH42_04565 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH42_04565 PF12008 Type I restriction and modification enzyme - subunit R C terminal LPH42_04570 PF01420 Type I restriction modification DNA specificity domain LPH42_04580 PF02384 N-6 DNA Methylase LPH42_04580 PF12161 HsdM N-terminal domain LPH42_04665 PF18766 SWI2/SNF2 ATPase LPH42_04665 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH42_04665 PF11867 Domain of unknown function (DUF3387) LPH42_04670 PF01420 Type I restriction modification DNA specificity domain LPH42_04675 PF02384 N-6 DNA Methylase LPH42_04680 PF02384 N-6 DNA Methylase LPH42_04790 PF01638 HxlR-like helix-turn-helix LPH42_04795 PF00106 short chain dehydrogenase LPH42_04815 PF00912 Transglycosylase LPH42_04815 PF00905 Penicillin binding protein transpeptidase domain LPH42_04815 PF14814 Bifunctional transglycosylase second domain LPH42_04825 PF13307 Helicase C-terminal domain LPH42_04825 PF04851 Type III restriction enzyme, res subunit LPH42_04835 PF00484 Carbonic anhydrase LPH42_04840 PF00534 Glycosyl transferases group 1 LPH42_04845 PF01522 Polysaccharide deacetylase LPH42_04855 PF09383 NIL domain LPH42_04855 PF00005 ABC transporter LPH42_04860 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_04865 PF03180 NLPA lipoprotein LPH42_04880 PF02817 e3 binding domain LPH42_04880 PF00364 Biotin-requiring enzyme LPH42_04880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH42_04885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH42_04885 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH42_04895 PF01545 Cation efflux family LPH42_04900 PF01053 Cys/Met metabolism PLP-dependent enzyme LPH42_04905 PF00561 alpha/beta hydrolase fold LPH42_04910 PF01551 Peptidase family M23 LPH42_04915 PF01975 Survival protein SurE LPH42_04930 PF01476 LysM domain LPH42_04930 PF01551 Peptidase family M23 LPH42_04945 PF00842 Alanine racemase, C-terminal domain LPH42_04945 PF01168 Alanine racemase, N-terminal domain LPH42_04950 PF01266 FAD dependent oxidoreductase LPH42_04960 PF01641 SelR domain LPH42_04970 PF00728 Glycosyl hydrolase family 20, catalytic domain LPH42_04970 PF02838 Glycosyl hydrolase family 20, domain 2 LPH42_04970 PF07691 PA14 domain LPH42_04980 PF07691 PA14 domain LPH42_04980 PF14310 Fibronectin type III-like domain LPH42_04980 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH42_04980 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH42_04995 PF07971 Glycosyl hydrolase family 92 LPH42_04995 PF17678 Glycosyl hydrolase family 92 N-terminal domain LPH42_05000 PF01301 Glycosyl hydrolases family 35 LPH42_05005 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LPH42_05010 PF00639 PPIC-type PPIASE domain LPH42_05010 PF09312 SurA N-terminal domain LPH42_05015 PF04453 LPS transport system D LPH42_05025 PF01494 FAD binding domain LPH42_05030 PF01494 FAD binding domain LPH42_05035 PF06719 AraC-type transcriptional regulator N-terminus LPH42_05035 PF12833 Helix-turn-helix domain LPH42_05040 PF02525 Flavodoxin-like fold LPH42_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_05050 PF03466 LysR substrate binding domain LPH42_05055 PF10414 Sirohaem synthase dimerisation region LPH42_05055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH42_05055 PF14824 Sirohaem biosynthesis protein central LPH42_05060 PF00291 Pyridoxal-phosphate dependent enzyme LPH42_05070 PF00274 Fructose-bisphosphate aldolase class-I LPH42_05085 PF02887 Pyruvate kinase, alpha/beta domain LPH42_05085 PF00224 Pyruvate kinase, barrel domain LPH42_05090 PF00162 Phosphoglycerate kinase LPH42_05105 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH42_05110 PF01475 Ferric uptake regulator family LPH42_05125 PF00150 Cellulase (glycosyl hydrolase family 5) LPH42_05125 PF00553 Cellulose binding domain LPH42_05135 PF05193 Peptidase M16 inactive domain LPH42_05135 PF00675 Insulinase (Peptidase family M16) LPH42_05150 PF03330 Lytic transglycolase LPH42_05155 PF07516 SecA Wing and Scaffold domain LPH42_05155 PF01043 SecA preprotein cross-linking domain LPH42_05155 PF07517 SecA DEAD-like domain LPH42_05155 PF02810 SEC-C motif LPH42_05160 PF01551 Peptidase family M23 LPH42_05160 PF08525 Opacity-associated protein A N-terminal motif LPH42_05160 PF01476 LysM domain LPH42_05170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LPH42_05175 PF00091 Tubulin/FtsZ family, GTPase domain LPH42_05175 PF12327 FtsZ family, C-terminal domain LPH42_05180 PF02491 SHS2 domain inserted in FTSA LPH42_05185 PF08478 POTRA domain, FtsQ-type LPH42_05185 PF03799 Cell division protein FtsQ LPH42_05190 PF07478 D-ala D-ala ligase C-terminus LPH42_05195 PF08245 Mur ligase middle domain LPH42_05195 PF02875 Mur ligase family, glutamate ligase domain LPH42_05195 PF01225 Mur ligase family, catalytic domain LPH42_05200 PF03033 Glycosyltransferase family 28 N-terminal domain LPH42_05200 PF04101 Glycosyltransferase family 28 C-terminal domain LPH42_05205 PF01098 Cell cycle protein LPH42_05210 PF00953 Glycosyl transferase family 4 LPH42_05215 PF02875 Mur ligase family, glutamate ligase domain LPH42_05215 PF08245 Mur ligase middle domain LPH42_05215 PF01225 Mur ligase family, catalytic domain LPH42_05220 PF01225 Mur ligase family, catalytic domain LPH42_05220 PF02875 Mur ligase family, glutamate ligase domain LPH42_05220 PF08245 Mur ligase middle domain LPH42_05225 PF00905 Penicillin binding protein transpeptidase domain LPH42_05225 PF03717 Penicillin-binding Protein dimerisation domain LPH42_05230 PF04999 Cell division protein FtsL LPH42_05235 PF01795 MraW methylase family LPH42_05240 PF02381 MraZ protein, putative antitoxin-like LPH42_05245 PF02080 TrkA-C domain LPH42_05245 PF03600 Citrate transporter LPH42_05250 PF02390 Putative methyltransferase LPH42_05255 PF05690 Thiazole biosynthesis protein ThiG LPH42_05265 PF00657 GDSL-like Lipase/Acylhydrolase LPH42_05265 PF03797 Autotransporter beta-domain LPH42_05295 PF07977 FabA-like domain LPH42_05320 PF00692 dUTPase LPH42_05330 PF08676 MutL C terminal dimerisation domain LPH42_05330 PF01119 DNA mismatch repair protein, C-terminal domain LPH42_05335 PF01520 N-acetylmuramoyl-L-alanine amidase LPH42_05335 PF11741 AMIN domain LPH42_05340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LPH42_05345 PF01256 Carbohydrate kinase LPH42_05345 PF03853 YjeF-related protein N-terminus LPH42_05350 PF13742 OB-fold nucleic acid binding domain LPH42_05350 PF02601 Exonuclease VII, large subunit LPH42_05365 PF00570 HRDC domain LPH42_05365 PF01612 3'-5' exonuclease LPH42_05395 PF00216 Bacterial DNA-binding protein LPH42_05400 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LPH42_05400 PF01588 Putative tRNA binding domain LPH42_05400 PF03147 Ferredoxin-fold anticodon binding domain LPH42_05400 PF03484 tRNA synthetase B5 domain LPH42_05400 PF03483 B3/4 domain LPH42_05405 PF01409 tRNA synthetases class II core domain (F) LPH42_05405 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LPH42_05410 PF00453 Ribosomal protein L20 LPH42_05415 PF01632 Ribosomal protein L35 LPH42_05420 PF05198 Translation initiation factor IF-3, N-terminal domain LPH42_05420 PF00707 Translation initiation factor IF-3, C-terminal domain LPH42_05425 PF03129 Anticodon binding domain LPH42_05425 PF02824 TGS domain LPH42_05425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH42_05425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH42_05435 PF18030 RimK PreATP-grasp domain LPH42_05435 PF08443 RimK-like ATP-grasp domain LPH42_05440 PF00486 Transcriptional regulatory protein, C terminal LPH42_05440 PF00072 Response regulator receiver domain LPH42_05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_05445 PF00512 His Kinase A (phospho-acceptor) domain LPH42_05445 PF00989 PAS fold LPH42_05445 PF11808 Phosphate regulon sensor protein PhoR LPH42_05450 PF01121 Dephospho-CoA kinase LPH42_05455 PF01478 Type IV leader peptidase family LPH42_05455 PF06750 Bacterial Peptidase A24 N-terminal domain LPH42_05460 PF00482 Type II secretion system (T2SS), protein F LPH42_05465 PF07963 Prokaryotic N-terminal methylation motif LPH42_05465 PF00114 Pilin (bacterial filament) LPH42_05480 PF07963 Prokaryotic N-terminal methylation motif LPH42_05480 PF00114 Pilin (bacterial filament) LPH42_05485 PF07963 Prokaryotic N-terminal methylation motif LPH42_05485 PF00114 Pilin (bacterial filament) LPH42_05495 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH42_05495 PF00437 Type II/IV secretion system protein LPH42_05500 PF00072 Response regulator receiver domain LPH42_05500 PF02954 Bacterial regulatory protein, Fis family LPH42_05500 PF00158 Sigma-54 interaction domain LPH42_05505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_05505 PF00512 His Kinase A (phospho-acceptor) domain LPH42_05510 PF00549 CoA-ligase LPH42_05510 PF08442 ATP-grasp domain LPH42_05515 PF00549 CoA-ligase LPH42_05515 PF02629 CoA binding domain LPH42_05520 PF12631 MnmE helical domain LPH42_05520 PF01926 50S ribosome-binding GTPase LPH42_05520 PF10396 GTP-binding protein TrmE N-terminus LPH42_05530 PF14849 YidC periplasmic domain LPH42_05530 PF02096 60Kd inner membrane protein LPH42_05535 PF00825 Ribonuclease P LPH42_05540 PF00468 Ribosomal protein L34 LPH42_05545 PF08299 Bacterial dnaA protein helix-turn-helix LPH42_05545 PF00308 Bacterial dnaA protein LPH42_05545 PF11638 DnaA N-terminal domain LPH42_05550 PF00712 DNA polymerase III beta subunit, N-terminal domain LPH42_05550 PF02768 DNA polymerase III beta subunit, C-terminal domain LPH42_05550 PF02767 DNA polymerase III beta subunit, central domain LPH42_05555 PF02463 RecF/RecN/SMC N terminal domain LPH42_05560 PF00986 DNA gyrase B subunit, carboxyl terminus LPH42_05560 PF01751 Toprim domain LPH42_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_05560 PF00204 DNA gyrase B LPH42_05560 PF18053 DNA gyrase B subunit insert domain LPH42_05570 PF01435 Peptidase family M48 LPH42_05580 PF03544 Gram-negative bacterial TonB protein C-terminal LPH42_05585 PF01618 MotA/TolQ/ExbB proton channel family LPH42_05590 PF02472 Biopolymer transport protein ExbD/TolR LPH42_05595 PF02472 Biopolymer transport protein ExbD/TolR LPH42_05615 PF01218 Coproporphyrinogen III oxidase LPH42_05640 PF00793 DAHP synthetase I family LPH42_05645 PF07963 Prokaryotic N-terminal methylation motif LPH42_05645 PF00114 Pilin (bacterial filament) LPH42_05665 PF05567 Neisseria PilC beta-propeller domain LPH42_05670 PF00114 Pilin (bacterial filament) LPH42_05670 PF07963 Prokaryotic N-terminal methylation motif LPH42_05675 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LPH42_05680 PF00155 Aminotransferase class I and II LPH42_05685 PF01741 Large-conductance mechanosensitive channel, MscL LPH42_05710 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LPH42_05720 PF02559 CarD-like/TRCF domain LPH42_05720 PF00270 DEAD/DEAH box helicase LPH42_05720 PF00271 Helicase conserved C-terminal domain LPH42_05720 PF03461 TRCF domain LPH42_05720 PF17757 UvrB interaction domain LPH42_05725 PF01220 Dehydroquinase class II LPH42_05730 PF00364 Biotin-requiring enzyme LPH42_05735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH42_05735 PF00289 Biotin carboxylase, N-terminal domain LPH42_05735 PF02785 Biotin carboxylase C-terminal domain LPH42_05740 PF13361 UvrD-like helicase C-terminal domain LPH42_05740 PF00580 UvrD/REP helicase N-terminal domain LPH42_05750 PF00042 Globin LPH42_05750 PF00175 Oxidoreductase NAD-binding domain LPH42_05750 PF00970 Oxidoreductase FAD-binding domain LPH42_05760 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LPH42_05770 PF02195 ParB-like nuclease domain LPH42_05770 PF06613 KorB C-terminal beta-barrel domain LPH42_05770 PF08535 KorB domain LPH42_05785 PF04055 Radical SAM superfamily LPH42_05785 PF06968 Biotin and Thiamin Synthesis associated domain LPH42_05790 PF01734 Patatin-like phospholipase LPH42_05795 PF01040 UbiA prenyltransferase family LPH42_05815 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LPH42_05850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH42_05850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH42_05860 PF02978 Signal peptide binding domain LPH42_05860 PF02881 SRP54-type protein, helical bundle domain LPH42_05860 PF00448 SRP54-type protein, GTPase domain LPH42_05880 PF13954 PapC N-terminal domain LPH42_05880 PF13953 PapC C-terminal domain LPH42_05880 PF00577 Outer membrane usher protein LPH42_05885 PF02753 Pili assembly chaperone PapD, C-terminal domain LPH42_05885 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LPH42_05890 PF16970 Type-1 fimbrial protein, A LPH42_05895 PF02464 Competence-damaged protein LPH42_05900 PF00083 Sugar (and other) transporter LPH42_05905 PF01926 50S ribosome-binding GTPase LPH42_05905 PF13167 GTP-binding GTPase N-terminal LPH42_05905 PF16360 GTP-binding GTPase Middle Region LPH42_05910 PF17209 Hfq protein LPH42_05920 PF00809 Pterin binding enzyme LPH42_05925 PF01434 Peptidase family M41 LPH42_05925 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_05925 PF17862 AAA+ lid domain LPH42_05925 PF06480 FtsH Extracellular LPH42_05930 PF01728 FtsJ-like methyltransferase LPH42_05935 PF01985 CRS1 / YhbY (CRM) domain LPH42_05950 PF00920 Dehydratase family LPH42_05980 PF03279 Bacterial lipid A biosynthesis acyltransferase LPH42_05985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LPH42_06010 PF00886 Ribosomal protein S16 LPH42_06015 PF01782 RimM N-terminal domain LPH42_06015 PF05239 PRC-barrel domain LPH42_06020 PF01746 tRNA (Guanine-1)-methyltransferase LPH42_06025 PF01245 Ribosomal protein L19 LPH42_06030 PF00557 Metallopeptidase family M24 LPH42_06040 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LPH42_06040 PF14602 Hexapeptide repeat of succinyl-transferase LPH42_06040 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_06045 PF03960 ArsC family LPH42_06050 PF01546 Peptidase family M20/M25/M40 LPH42_06050 PF07687 Peptidase dimerisation domain LPH42_06055 PF13537 Glutamine amidotransferase domain LPH42_06055 PF00733 Asparagine synthase LPH42_06070 PF03060 Nitronate monooxygenase LPH42_06080 PF01726 LexA DNA binding domain LPH42_06080 PF00717 Peptidase S24-like LPH42_06085 PF00154 recA bacterial DNA recombination protein LPH42_06090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH42_06090 PF02272 DHHA1 domain LPH42_06090 PF01411 tRNA synthetases class II (A) LPH42_06095 PF02599 Global regulator protein family LPH42_06105 PF01432 Peptidase family M3 LPH42_06120 PF07731 Multicopper oxidase LPH42_06120 PF07732 Multicopper oxidase LPH42_06120 PF00394 Multicopper oxidase LPH42_06125 PF05275 Copper resistance protein B precursor (CopB) LPH42_06130 PF00133 tRNA synthetases class I (I, L, M and V) LPH42_06130 PF10458 Valyl tRNA synthetase tRNA binding arm LPH42_06130 PF08264 Anticodon-binding domain of tRNA LPH42_06150 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH42_06150 PF00883 Cytosol aminopeptidase family, catalytic domain LPH42_06170 PF01380 SIS domain LPH42_06185 PF17284 Spermidine synthase tetramerisation domain LPH42_06190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LPH42_06190 PF17944 Arginine decarboxylase C-terminal helical extension LPH42_06190 PF17810 Arginine decarboxylase helical bundle domain LPH42_06195 PF00106 short chain dehydrogenase LPH42_06205 PF00750 tRNA synthetases class I (R) LPH42_06205 PF03485 Arginyl tRNA synthetase N terminal domain LPH42_06205 PF05746 DALR anticodon binding domain LPH42_06210 PF04002 RadC-like JAB domain LPH42_06215 PF04127 DNA / pantothenate metabolism flavoprotein LPH42_06215 PF02441 Flavoprotein LPH42_06220 PF00692 dUTPase LPH42_06225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH42_06225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH42_06225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH42_06225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH42_06235 PF00156 Phosphoribosyl transferase domain LPH42_06285 PF07690 Major Facilitator Superfamily LPH42_06290 PF03702 Anhydro-N-acetylmuramic acid kinase LPH42_06295 PF04225 Opacity-associated protein A LysM-like domain LPH42_06295 PF01551 Peptidase family M23 LPH42_06300 PF00579 tRNA synthetases class I (W and Y) LPH42_06330 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH42_06330 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH42_06360 PF00009 Elongation factor Tu GTP binding domain LPH42_06360 PF16658 Class II release factor RF3, C-terminal domain LPH42_06365 PF03006 Haemolysin-III related LPH42_06370 PF00535 Glycosyl transferase family 2 LPH42_06375 PF01026 TatD related DNase LPH42_06390 PF01597 Glycine cleavage H-protein LPH42_06395 PF01571 Aminomethyltransferase folate-binding domain LPH42_06395 PF08669 Glycine cleavage T-protein C-terminal barrel domain LPH42_06405 PF01145 SPFH domain / Band 7 family LPH42_06405 PF16200 C-terminal region of band_7 LPH42_06410 PF03819 MazG nucleotide pyrophosphohydrolase domain LPH42_06415 PF00459 Inositol monophosphatase family LPH42_06420 PF00293 NUDIX domain LPH42_06425 PF00202 Aminotransferase class-III LPH42_06430 PF04452 RNA methyltransferase LPH42_06440 PF00270 DEAD/DEAH box helicase LPH42_06440 PF00271 Helicase conserved C-terminal domain LPH42_06445 PF01242 6-pyruvoyl tetrahydropterin synthase LPH42_06470 PF03653 Uncharacterised protein family (UPF0093) LPH42_06475 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LPH42_06480 PF01336 OB-fold nucleic acid binding domain LPH42_06480 PF14579 Helix-hairpin-helix motif LPH42_06480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LPH42_06480 PF07733 Bacterial DNA polymerase III alpha NTPase domain LPH42_06480 PF02811 PHP domain LPH42_06485 PF01259 SAICAR synthetase LPH42_06490 PF00226 DnaJ domain LPH42_06490 PF05099 Tellurite resistance protein TerB LPH42_06495 PF00834 Ribulose-phosphate 3 epimerase family LPH42_06505 PF04715 Anthranilate synthase component I, N terminal region LPH42_06505 PF00425 chorismate binding enzyme LPH42_06510 PF00117 Glutamine amidotransferase class-I LPH42_06515 PF02885 Glycosyl transferase family, helical bundle domain LPH42_06515 PF00591 Glycosyl transferase family, a/b domain LPH42_06520 PF00218 Indole-3-glycerol phosphate synthase LPH42_06535 PF12849 PBP superfamily domain LPH42_06555 PF01321 Creatinase/Prolidase N-terminal domain LPH42_06555 PF00557 Metallopeptidase family M24 LPH42_06570 PF01702 Queuine tRNA-ribosyltransferase LPH42_06575 PF02699 Preprotein translocase subunit LPH42_06580 PF02355 Protein export membrane protein LPH42_06580 PF13721 SecD export protein N-terminal TM region LPH42_06580 PF07549 SecD/SecF GG Motif LPH42_06585 PF07549 SecD/SecF GG Motif LPH42_06585 PF02355 Protein export membrane protein LPH42_06595 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH42_06595 PF12626 Polymerase A arginine-rich C-terminus LPH42_06595 PF01743 Poly A polymerase head domain LPH42_06600 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LPH42_06605 PF02548 Ketopantoate hydroxymethyltransferase LPH42_06610 PF02569 Pantoate-beta-alanine ligase LPH42_06615 PF02261 Aspartate decarboxylase LPH42_06620 PF00342 Phosphoglucose isomerase LPH42_06630 PF17384 RimP C-terminal SH3 domain LPH42_06630 PF02576 RimP N-terminal domain LPH42_06635 PF13184 NusA-like KH domain LPH42_06635 PF08529 NusA N-terminal domain LPH42_06635 PF00575 S1 RNA binding domain LPH42_06640 PF04760 Translation initiation factor IF-2, N-terminal region LPH42_06640 PF08364 Bacterial translation initiation factor IF-2 associated region LPH42_06640 PF00009 Elongation factor Tu GTP binding domain LPH42_06640 PF11987 Translation-initiation factor 2 LPH42_06645 PF02033 Ribosome-binding factor A LPH42_06650 PF01509 TruB family pseudouridylate synthase (N terminal domain) LPH42_06650 PF16198 tRNA pseudouridylate synthase B C-terminal domain LPH42_06650 PF09157 Pseudouridine synthase II TruB, C-terminal LPH42_06655 PF00312 Ribosomal protein S15 LPH42_06660 PF00575 S1 RNA binding domain LPH42_06660 PF03725 3' exoribonuclease family, domain 2 LPH42_06660 PF01138 3' exoribonuclease family, domain 1 LPH42_06660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LPH42_06660 PF00013 KH domain LPH42_06665 PF01638 HxlR-like helix-turn-helix LPH42_06670 PF05368 NmrA-like family LPH42_06675 PF00873 AcrB/AcrD/AcrF family LPH42_06685 PF00999 Sodium/hydrogen exchanger family LPH42_06705 PF03880 DbpA RNA binding domain LPH42_06705 PF00270 DEAD/DEAH box helicase LPH42_06705 PF00271 Helicase conserved C-terminal domain LPH42_06710 PF01012 Electron transfer flavoprotein domain LPH42_06710 PF00766 Electron transfer flavoprotein FAD-binding domain LPH42_06715 PF01012 Electron transfer flavoprotein domain LPH42_06720 PF16363 GDP-mannose 4,6 dehydratase LPH42_06725 PF00483 Nucleotidyl transferase LPH42_06730 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LPH42_06735 PF04321 RmlD substrate binding domain LPH42_06740 PF01050 Mannose-6-phosphate isomerase LPH42_06740 PF00483 Nucleotidyl transferase LPH42_06745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH42_06745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH42_06745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH42_06745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH42_06795 PF03797 Autotransporter beta-domain LPH42_06795 PF12951 Passenger-associated-transport-repeat LPH42_06795 PF00082 Subtilase family LPH42_06800 PF03797 Autotransporter beta-domain LPH42_06800 PF12951 Passenger-associated-transport-repeat LPH42_06800 PF00082 Subtilase family LPH42_06805 PF06779 Uncharacterised MFS-type transporter YbfB LPH42_06810 PF07669 Eco57I restriction-modification methylase LPH42_06820 PF00365 Phosphofructokinase LPH42_06830 PF01225 Mur ligase family, catalytic domain LPH42_06830 PF02875 Mur ligase family, glutamate ligase domain LPH42_06830 PF08245 Mur ligase middle domain LPH42_06835 PF01569 PAP2 superfamily LPH42_06855 PF00892 EamA-like transporter family LPH42_06860 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH42_06860 PF00883 Cytosol aminopeptidase family, catalytic domain LPH42_06870 PF01594 AI-2E family transporter LPH42_06890 PF00595 PDZ domain LPH42_06895 PF01370 NAD dependent epimerase/dehydratase family LPH42_06895 PF08338 Domain of unknown function (DUF1731) LPH42_06900 PF13193 AMP-binding enzyme C-terminal domain LPH42_06900 PF00501 AMP-binding enzyme LPH42_06905 PF00694 Aconitase C-terminal domain LPH42_06905 PF00330 Aconitase family (aconitate hydratase) LPH42_06920 PF11791 Aconitate B N-terminal domain LPH42_06920 PF06434 Aconitate hydratase 2 N-terminus LPH42_06920 PF00330 Aconitase family (aconitate hydratase) LPH42_06935 PF02384 N-6 DNA Methylase LPH42_06940 PF01420 Type I restriction modification DNA specificity domain LPH42_06955 PF18766 SWI2/SNF2 ATPase LPH42_06955 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH42_06955 PF11867 Domain of unknown function (DUF3387) LPH42_06975 PF00121 Triosephosphate isomerase LPH42_06990 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LPH42_06995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LPH42_07000 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LPH42_07005 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LPH42_07015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LPH42_07015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LPH42_07015 PF10531 SLBB domain LPH42_07020 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LPH42_07020 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LPH42_07020 PF00384 Molybdopterin oxidoreductase LPH42_07025 PF00146 NADH dehydrogenase LPH42_07030 PF12838 4Fe-4S dicluster domain LPH42_07035 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LPH42_07040 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LPH42_07045 PF00361 Proton-conducting membrane transporter LPH42_07045 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPH42_07050 PF00361 Proton-conducting membrane transporter LPH42_07050 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LPH42_07055 PF00361 Proton-conducting membrane transporter LPH42_07060 PF00106 short chain dehydrogenase LPH42_07065 PF03600 Citrate transporter LPH42_07075 PF00486 Transcriptional regulatory protein, C terminal LPH42_07075 PF00072 Response regulator receiver domain LPH42_07080 PF00512 His Kinase A (phospho-acceptor) domain LPH42_07080 PF08521 Two-component sensor kinase N-terminal LPH42_07080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_07090 PF00196 Bacterial regulatory proteins, luxR family LPH42_07090 PF00072 Response regulator receiver domain LPH42_07095 PF00672 HAMP domain LPH42_07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_07095 PF01627 Hpt domain LPH42_07095 PF00072 Response regulator receiver domain LPH42_07095 PF00512 His Kinase A (phospho-acceptor) domain LPH42_07105 PF00375 Sodium:dicarboxylate symporter family LPH42_07110 PF00390 Malic enzyme, N-terminal domain LPH42_07110 PF03949 Malic enzyme, NAD binding domain LPH42_07110 PF01515 Phosphate acetyl/butaryl transferase LPH42_07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_07115 PF00183 Hsp90 protein LPH42_07125 PF01467 Cytidylyltransferase-like LPH42_07135 PF00037 4Fe-4S binding domain LPH42_07145 PF00990 Diguanylate cyclase, GGDEF domain LPH42_07150 PF01551 Peptidase family M23 LPH42_07150 PF01476 LysM domain LPH42_07155 PF01979 Amidohydrolase family LPH42_07160 PF01809 Putative membrane protein insertion efficiency factor LPH42_07165 PF01258 Prokaryotic dksA/traR C4-type zinc finger LPH42_07195 PF02657 Fe-S metabolism associated domain LPH42_07200 PF01406 tRNA synthetases class I (C) catalytic domain LPH42_07200 PF09190 DALR domain LPH42_07210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH42_07210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH42_07215 PF00764 Arginosuccinate synthase LPH42_07220 PF01546 Peptidase family M20/M25/M40 LPH42_07220 PF07687 Peptidase dimerisation domain LPH42_07225 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LPH42_07225 PF00696 Amino acid kinase family LPH42_07235 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH42_07240 PF00206 Lyase LPH42_07250 PF01472 PUA domain LPH42_07250 PF00696 Amino acid kinase family LPH42_07255 PF00171 Aldehyde dehydrogenase family LPH42_07265 PF00239 Resolvase, N terminal domain LPH42_07265 PF02796 Helix-turn-helix domain of resolvase LPH42_07290 PF00239 Resolvase, N terminal domain LPH42_07290 PF02796 Helix-turn-helix domain of resolvase LPH42_07305 PF13700 Domain of unknown function (DUF4158) LPH42_07305 PF01526 Tn3 transposase DDE domain LPH42_07335 PF03524 Conjugal transfer protein LPH42_07375 PF01593 Flavin containing amine oxidoreductase LPH42_07385 PF02627 Carboxymuconolactone decarboxylase family LPH42_07405 PF03466 LysR substrate binding domain LPH42_07405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_07410 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LPH42_07415 PF09386 Antitoxin ParD LPH42_07420 PF02796 Helix-turn-helix domain of resolvase LPH42_07420 PF00239 Resolvase, N terminal domain LPH42_07445 PF00239 Resolvase, N terminal domain LPH42_07445 PF02796 Helix-turn-helix domain of resolvase LPH42_07485 PF06594 Haemolysin-type calcium binding protein related domain LPH42_07485 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH42_07490 PF14437 MafB19-like deaminase LPH42_07495 PF01325 Iron dependent repressor, N-terminal DNA binding domain LPH42_07495 PF02742 Iron dependent repressor, metal binding and dimerisation domain LPH42_07500 PF01566 Natural resistance-associated macrophage protein LPH42_07515 PF04376 Arginine-tRNA-protein transferase, N terminus LPH42_07515 PF04377 Arginine-tRNA-protein transferase, C terminus LPH42_07550 PF12951 Passenger-associated-transport-repeat LPH42_07550 PF00082 Subtilase family LPH42_07550 PF03797 Autotransporter beta-domain LPH42_07580 PF01553 Acyltransferase LPH42_07590 PF05221 S-adenosyl-L-homocysteine hydrolase LPH42_07590 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LPH42_07605 PF01351 Ribonuclease HII LPH42_07610 PF02684 Lipid-A-disaccharide synthetase LPH42_07615 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_07615 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LPH42_07620 PF07977 FabA-like domain LPH42_07625 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_07625 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LPH42_07630 PF01103 Surface antigen LPH42_07630 PF07244 Surface antigen variable number repeat LPH42_07635 PF17820 PDZ domain LPH42_07635 PF02163 Peptidase family M50 LPH42_07640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LPH42_07640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LPH42_07640 PF13288 DXP reductoisomerase C-terminal domain LPH42_07650 PF01255 Putative undecaprenyl diphosphate synthase LPH42_07655 PF01765 Ribosome recycling factor LPH42_07680 PF04305 Protein of unknown function (DUF455) LPH42_07685 PF00696 Amino acid kinase family LPH42_07755 PF01081 KDPG and KHG aldolase LPH42_07760 PF00920 Dehydratase family LPH42_07765 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LPH42_07770 PF02685 Glucokinase LPH42_07775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LPH42_07775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LPH42_07780 PF17912 MalK OB fold domain LPH42_07780 PF00005 ABC transporter LPH42_07795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH42_07800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH42_07805 PF02910 Fumarate reductase flavoprotein C-term LPH42_07805 PF00890 FAD binding domain LPH42_07810 PF13237 4Fe-4S dicluster domain LPH42_07810 PF13085 2Fe-2S iron-sulfur cluster binding domain LPH42_07815 PF03937 Flavinator of succinate dehydrogenase LPH42_07825 PF12704 MacB-like periplasmic core domain LPH42_07825 PF02687 FtsX-like permease family LPH42_07830 PF00005 ABC transporter LPH42_07835 PF00753 Metallo-beta-lactamase superfamily LPH42_07835 PF03772 Competence protein LPH42_07850 PF00005 ABC transporter LPH42_07850 PF00664 ABC transporter transmembrane region LPH42_07855 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LPH42_07860 PF01883 Iron-sulfur cluster assembly protein LPH42_07860 PF10609 NUBPL iron-transfer P-loop NTPase LPH42_07875 PF13091 PLD-like domain LPH42_07900 PF03358 NADPH-dependent FMN reductase LPH42_07905 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LPH42_07905 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LPH42_07920 PF01300 Telomere recombination LPH42_07925 PF01751 Toprim domain LPH42_07925 PF13368 Topoisomerase C-terminal repeat LPH42_07925 PF01131 DNA topoisomerase LPH42_07935 PF04361 Protein of unknown function (DUF494) LPH42_07940 PF17782 DprA winged helix domain LPH42_07940 PF02481 DNA recombination-mediator protein A LPH42_07950 PF01327 Polypeptide deformylase LPH42_07955 PF02911 Formyl transferase, C-terminal domain LPH42_07955 PF00551 Formyl transferase LPH42_07960 PF01189 16S rRNA methyltransferase RsmB/F LPH42_07960 PF01029 NusB family LPH42_07965 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LPH42_07980 PF07963 Prokaryotic N-terminal methylation motif LPH42_07980 PF00114 Pilin (bacterial filament) LPH42_08100 PF01612 3'-5' exonuclease LPH42_08100 PF00476 DNA polymerase family A LPH42_08100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH42_08100 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH42_08105 PF01113 Dihydrodipicolinate reductase, N-terminus LPH42_08105 PF05173 Dihydrodipicolinate reductase, C-terminus LPH42_08110 PF00117 Glutamine amidotransferase class-I LPH42_08110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LPH42_08115 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LPH42_08115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH42_08115 PF02142 MGS-like domain LPH42_08120 PF03449 Transcription elongation factor, N-terminal LPH42_08120 PF01272 Transcription elongation factor, GreA/GreB, C-term LPH42_08130 PF17768 RecJ OB domain LPH42_08130 PF02272 DHHA1 domain LPH42_08130 PF01368 DHH family LPH42_08140 PF01336 OB-fold nucleic acid binding domain LPH42_08140 PF00152 tRNA synthetases class II (D, K and N) LPH42_08145 PF00072 Response regulator receiver domain LPH42_08150 PF00072 Response regulator receiver domain LPH42_08150 PF00512 His Kinase A (phospho-acceptor) domain LPH42_08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_08150 PF01627 Hpt domain LPH42_08155 PF00378 Enoyl-CoA hydratase/isomerase LPH42_08160 PF01842 ACT domain LPH42_08160 PF00696 Amino acid kinase family LPH42_08170 PF08245 Mur ligase middle domain LPH42_08190 PF00293 NUDIX domain LPH42_08200 PF02219 Methylenetetrahydrofolate reductase LPH42_08210 PF02545 Maf-like protein LPH42_08215 PF00575 S1 RNA binding domain LPH42_08215 PF10150 Ribonuclease E/G family LPH42_08225 PF01523 Putative modulator of DNA gyrase LPH42_08230 PF04751 Protein of unknown function (DUF615) LPH42_08235 PF01523 Putative modulator of DNA gyrase LPH42_08245 PF17761 DUF1016 N-terminal domain LPH42_08245 PF06250 YhcG PDDEXK nuclease domain LPH42_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_08270 PF03466 LysR substrate binding domain LPH42_08275 PF03358 NADPH-dependent FMN reductase LPH42_08285 PF08240 Alcohol dehydrogenase GroES-like domain LPH42_08285 PF00107 Zinc-binding dehydrogenase LPH42_08300 PF00248 Aldo/keto reductase family LPH42_08315 PF12804 MobA-like NTP transferase domain LPH42_08315 PF14602 Hexapeptide repeat of succinyl-transferase LPH42_08315 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_08325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LPH42_08325 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LPH42_08330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH42_08330 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH42_08335 PF00231 ATP synthase LPH42_08340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH42_08340 PF00306 ATP synthase alpha/beta chain, C terminal domain LPH42_08340 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH42_08345 PF00213 ATP synthase delta (OSCP) subunit LPH42_08350 PF00430 ATP synthase B/B' CF(0) LPH42_08355 PF00137 ATP synthase subunit C LPH42_08360 PF00119 ATP synthase A chain LPH42_08370 PF00338 Ribosomal protein S10p/S20e LPH42_08375 PF00297 Ribosomal protein L3 LPH42_08380 PF00573 Ribosomal protein L4/L1 family LPH42_08385 PF00276 Ribosomal protein L23 LPH42_08390 PF00181 Ribosomal Proteins L2, RNA binding domain LPH42_08390 PF03947 Ribosomal Proteins L2, C-terminal domain LPH42_08395 PF00203 Ribosomal protein S19 LPH42_08400 PF00237 Ribosomal protein L22p/L17e LPH42_08405 PF07650 KH domain LPH42_08405 PF00189 Ribosomal protein S3, C-terminal domain LPH42_08410 PF00252 Ribosomal protein L16p/L10e LPH42_08415 PF00831 Ribosomal L29 protein LPH42_08420 PF00366 Ribosomal protein S17 LPH42_08425 PF00238 Ribosomal protein L14p/L23e LPH42_08430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LPH42_08430 PF00467 KOW motif LPH42_08435 PF00673 ribosomal L5P family C-terminus LPH42_08435 PF00281 Ribosomal protein L5 LPH42_08440 PF00253 Ribosomal protein S14p/S29e LPH42_08445 PF00410 Ribosomal protein S8 LPH42_08450 PF00347 Ribosomal protein L6 LPH42_08455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LPH42_08460 PF03719 Ribosomal protein S5, C-terminal domain LPH42_08460 PF00333 Ribosomal protein S5, N-terminal domain LPH42_08465 PF00327 Ribosomal protein L30p/L7e LPH42_08470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LPH42_08475 PF00344 SecY translocase LPH42_08480 PF00416 Ribosomal protein S13/S18 LPH42_08485 PF00411 Ribosomal protein S11 LPH42_08490 PF01479 S4 domain LPH42_08490 PF00163 Ribosomal protein S4/S9 N-terminal domain LPH42_08495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LPH42_08495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LPH42_08495 PF01000 RNA polymerase Rpb3/RpoA insert domain LPH42_08500 PF01196 Ribosomal protein L17 LPH42_08505 PF04380 Membrane fusogenic activity LPH42_08510 PF01078 Magnesium chelatase, subunit ChlI LPH42_08510 PF13335 Magnesium chelatase, subunit ChlI C-terminal LPH42_08515 PF00561 alpha/beta hydrolase fold LPH42_08530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH42_08530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH42_08530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH42_08545 PF05697 Bacterial trigger factor protein (TF) LPH42_08545 PF05698 Bacterial trigger factor protein (TF) C-terminus LPH42_08550 PF00574 Clp protease LPH42_08555 PF10431 C-terminal, D2-small domain, of ClpB protein LPH42_08555 PF06689 ClpX C4-type zinc finger LPH42_08555 PF07724 AAA domain (Cdc48 subfamily) LPH42_08560 PF00004 ATPase family associated with various cellular activities (AAA) LPH42_08560 PF02190 ATP-dependent protease La (LON) substrate-binding domain LPH42_08560 PF05362 Lon protease (S16) C-terminal proteolytic domain LPH42_08565 PF00216 Bacterial DNA-binding protein LPH42_08590 PF02867 Ribonucleotide reductase, barrel domain LPH42_08590 PF03477 ATP cone domain LPH42_08590 PF00317 Ribonucleotide reductase, all-alpha domain LPH42_08595 PF00268 Ribonucleotide reductase, small chain LPH42_08620 PF01479 S4 domain LPH42_08620 PF00849 RNA pseudouridylate synthase LPH42_08625 PF13419 Haloacid dehalogenase-like hydrolase LPH42_08640 PF00830 Ribosomal L28 family LPH42_08645 PF00471 Ribosomal protein L33 LPH42_08650 PF13396 Phospholipase_D-nuclease N-terminal LPH42_08650 PF13091 PLD-like domain LPH42_08665 PF00114 Pilin (bacterial filament) LPH42_08665 PF07963 Prokaryotic N-terminal methylation motif LPH42_08685 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH42_08685 PF01612 3'-5' exonuclease LPH42_08685 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH42_08685 PF00476 DNA polymerase family A LPH42_08705 PF00959 Phage lysozyme LPH42_08725 PF01555 DNA methylase LPH42_08745 PF00043 Glutathione S-transferase, C-terminal domain LPH42_08745 PF02798 Glutathione S-transferase, N-terminal domain LPH42_08750 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LPH42_08750 PF00056 lactate/malate dehydrogenase, NAD binding domain LPH42_08755 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LPH42_08760 PF00009 Elongation factor Tu GTP binding domain LPH42_08760 PF03144 Elongation factor Tu domain 2 LPH42_08760 PF00679 Elongation factor G C-terminus LPH42_08775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH42_08775 PF00529 HlyD membrane-fusion protein of T1SS LPH42_08800 PF03412 Peptidase C39 family LPH42_08800 PF00664 ABC transporter transmembrane region LPH42_08800 PF00005 ABC transporter LPH42_08805 PF01061 ABC-2 type transporter LPH42_08810 PF00005 ABC transporter LPH42_08815 PF05567 Neisseria PilC beta-propeller domain LPH42_08830 PF08482 ATP-dependent helicase C-terminal LPH42_08830 PF00271 Helicase conserved C-terminal domain LPH42_08830 PF00270 DEAD/DEAH box helicase LPH42_08830 PF04408 Helicase associated domain (HA2) LPH42_08840 PF13185 GAF domain LPH42_08845 PF17243 POTRA domain TamA domain 1 LPH42_08845 PF01103 Surface antigen LPH42_08850 PF04357 TamB, inner membrane protein subunit of TAM complex LPH42_08865 PF00285 Citrate synthase, C-terminal domain LPH42_08870 PF00330 Aconitase family (aconitate hydratase) LPH42_08870 PF00694 Aconitase C-terminal domain LPH42_08875 PF04303 PrpF protein LPH42_08895 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LPH42_08895 PF01835 MG2 domain LPH42_08895 PF17962 Bacterial macroglobulin domain 6 LPH42_08895 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LPH42_08895 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LPH42_08895 PF07703 Alpha-2-macroglobulin bait region domain LPH42_08895 PF00207 Alpha-2-macroglobulin family LPH42_08895 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LPH42_08900 PF02583 Metal-sensitive transcriptional repressor LPH42_08905 PF03824 High-affinity nickel-transport protein LPH42_08910 PF07859 alpha/beta hydrolase fold LPH42_08915 PF12852 Cupin LPH42_08915 PF12833 Helix-turn-helix domain LPH42_08930 PF02868 Thermolysin metallopeptidase, alpha-helical domain LPH42_08930 PF01447 Thermolysin metallopeptidase, catalytic domain LPH42_08930 PF16485 Protealysin propeptide LPH42_08935 PF00929 Exonuclease LPH42_08940 PF00924 Mechanosensitive ion channel LPH42_08940 PF05552 Conserved TM helix LPH42_08945 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LPH42_08945 PF00391 PEP-utilising enzyme, mobile domain LPH42_08945 PF02896 PEP-utilising enzyme, TIM barrel domain LPH42_08950 PF03618 Kinase/pyrophosphorylase LPH42_08970 PF04286 Protein of unknown function (DUF445) LPH42_08985 PF04359 Protein of unknown function (DUF493) LPH42_08990 PF03099 Biotin/lipoate A/B protein ligase family LPH42_08995 PF04055 Radical SAM superfamily LPH42_08995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LPH42_09025 PF01595 Cyclin M transmembrane N-terminal domain LPH42_09025 PF03471 Transporter associated domain LPH42_09025 PF00571 CBS domain LPH42_09040 PF00204 DNA gyrase B LPH42_09040 PF00986 DNA gyrase B subunit, carboxyl terminus LPH42_09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_09040 PF01751 Toprim domain LPH42_09050 PF00117 Glutamine amidotransferase class-I LPH42_09050 PF06418 CTP synthase N-terminus LPH42_09055 PF00793 DAHP synthetase I family LPH42_09060 PF03952 Enolase, N-terminal domain LPH42_09060 PF00113 Enolase, C-terminal TIM barrel domain LPH42_09065 PF04977 Septum formation initiator LPH42_09070 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LPH42_09075 PF02542 YgbB family LPH42_09080 PF01713 Smr domain LPH42_09105 PF02470 MlaD protein LPH42_09105 PF03886 ABC-type transport auxiliary lipoprotein component LPH42_09110 PF00005 ABC transporter LPH42_09115 PF02405 Permease MlaE LPH42_09190 PF04093 rod shape-determining protein MreD LPH42_09195 PF03717 Penicillin-binding Protein dimerisation domain LPH42_09195 PF00905 Penicillin binding protein transpeptidase domain LPH42_09200 PF01098 Cell cycle protein LPH42_09205 PF02547 Queuosine biosynthesis protein LPH42_09210 PF02824 TGS domain LPH42_09210 PF04607 Region found in RelA / SpoT proteins LPH42_09210 PF13291 ACT domain LPH42_09225 PF03776 Septum formation topological specificity factor MinE LPH42_09230 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LPH42_09235 PF05209 Septum formation inhibitor MinC, N-terminal domain LPH42_09235 PF03775 Septum formation inhibitor MinC, C-terminal domain LPH42_09255 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH42_09265 PF01292 Prokaryotic cytochrome b561 LPH42_09270 PF04264 YceI-like domain LPH42_09275 PF09308 LuxQ, periplasmic LPH42_09275 PF00072 Response regulator receiver domain LPH42_09275 PF00512 His Kinase A (phospho-acceptor) domain LPH42_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_09285 PF01208 Uroporphyrinogen decarboxylase (URO-D) LPH42_09290 PF01761 3-dehydroquinate synthase LPH42_09295 PF01202 Shikimate kinase LPH42_09300 PF01243 Pyridoxamine 5'-phosphate oxidase LPH42_09300 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LPH42_09310 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LPH42_09310 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH42_09320 PF03932 CutC family LPH42_09340 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_09345 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_09350 PF00005 ABC transporter LPH42_09350 PF12857 TOBE-like domain LPH42_09390 PF01381 Helix-turn-helix LPH42_09465 PF10065 Uncharacterized conserved protein (DUF2303) LPH42_09490 PF04545 Sigma-70, region 4 LPH42_09490 PF04539 Sigma-70 region 3 LPH42_09490 PF04542 Sigma-70 region 2 LPH42_09490 PF00140 Sigma-70 factor, region 1.2 LPH42_09490 PF03979 Sigma-70 factor, region 1.1 LPH42_09490 PF04546 Sigma-70, non-essential region LPH42_09500 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH42_09500 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH42_09510 PF02321 Outer membrane efflux protein LPH42_09515 PF00529 HlyD membrane-fusion protein of T1SS LPH42_09515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH42_09520 PF07690 Major Facilitator Superfamily LPH42_09525 PF12697 Alpha/beta hydrolase family LPH42_09530 PF00155 Aminotransferase class I and II LPH42_09540 PF01040 UbiA prenyltransferase family LPH42_09545 PF00753 Metallo-beta-lactamase superfamily LPH42_09550 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH42_09550 PF01743 Poly A polymerase head domain LPH42_09550 PF01966 HD domain LPH42_09555 PF01464 Transglycosylase SLT domain LPH42_09555 PF14718 Soluble lytic murein transglycosylase L domain LPH42_09565 PF02666 Phosphatidylserine decarboxylase LPH42_09620 PF00456 Transketolase, thiamine diphosphate binding domain LPH42_09620 PF17831 Pyruvate dehydrogenase E1 component middle domain LPH42_09625 PF00698 Acyl transferase domain LPH42_09635 PF00550 Phosphopantetheine attachment site LPH42_09640 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH42_09640 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH42_09645 PF00425 chorismate binding enzyme LPH42_09645 PF04715 Anthranilate synthase component I, N terminal region LPH42_09650 PF02618 YceG-like family LPH42_09655 PF09115 DNA polymerase III, delta subunit, C terminal LPH42_09675 PF00459 Inositol monophosphatase family LPH42_09680 PF00588 SpoU rRNA Methylase family LPH42_09685 PF04055 Radical SAM superfamily LPH42_09690 PF09285 Elongation factor P, C-terminal LPH42_09690 PF08207 Elongation factor P (EF-P) KOW-like domain LPH42_09690 PF01132 Elongation factor P (EF-P) OB domain LPH42_09695 PF01979 Amidohydrolase family LPH42_09705 PF13419 Haloacid dehalogenase-like hydrolase LPH42_09720 PF00561 alpha/beta hydrolase fold LPH42_09725 PF08534 Redoxin LPH42_09755 PF00155 Aminotransferase class I and II LPH42_09760 PF00795 Carbon-nitrogen hydrolase LPH42_09770 PF00849 RNA pseudouridylate synthase LPH42_09770 PF01479 S4 domain LPH42_09775 PF04079 Segregation and condensation complex subunit ScpB LPH42_09780 PF02616 Segregation and condensation protein ScpA LPH42_09810 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_09815 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_09830 PF00795 Carbon-nitrogen hydrolase LPH42_09835 PF04371 Porphyromonas-type peptidyl-arginine deiminase LPH42_09845 PF00444 Ribosomal protein L36 LPH42_09850 PF02224 Cytidylate kinase LPH42_09855 PF00575 S1 RNA binding domain LPH42_09860 PF00216 Bacterial DNA-binding protein LPH42_09870 PF18073 Rubredoxin metal binding domain LPH42_09875 PF00953 Glycosyl transferase family 4 LPH42_09880 PF02719 Polysaccharide biosynthesis protein LPH42_09885 PF00483 Nucleotidyl transferase LPH42_09890 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LPH42_09890 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LPH42_09895 PF00478 IMP dehydrogenase / GMP reductase domain LPH42_09895 PF00571 CBS domain LPH42_09900 PF02540 NAD synthase LPH42_09900 PF00958 GMP synthase C terminal domain LPH42_09900 PF00117 Glutamine amidotransferase class-I LPH42_09950 PF09571 XcyI restriction endonuclease LPH42_09965 PF17760 UvrA interaction domain LPH42_09965 PF17755 UvrA DNA-binding domain LPH42_09965 PF00005 ABC transporter LPH42_09970 PF00829 Ribosomal prokaryotic L21 protein LPH42_09975 PF01016 Ribosomal L27 protein LPH42_09980 PF01018 GTP1/OBG LPH42_09980 PF01926 50S ribosome-binding GTPase LPH42_09985 PF01649 Ribosomal protein S20 LPH42_09990 PF03023 Lipid II flippase MurJ LPH42_09995 PF01687 Riboflavin kinase LPH42_09995 PF06574 FAD synthetase LPH42_10000 PF06827 Zinc finger found in FPG and IleRS LPH42_10000 PF00133 tRNA synthetases class I (I, L, M and V) LPH42_10000 PF08264 Anticodon-binding domain of tRNA LPH42_10005 PF01252 Signal peptidase (SPase) II LPH42_10010 PF02401 LytB protein LPH42_10080 PF13091 PLD-like domain LPH42_10080 PF13087 AAA domain LPH42_10085 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH42_10085 PF06594 Haemolysin-type calcium binding protein related domain LPH42_10150 PF03412 Peptidase C39 family LPH42_10150 PF00005 ABC transporter LPH42_10150 PF00664 ABC transporter transmembrane region LPH42_10155 PF00155 Aminotransferase class I and II LPH42_10160 PF01522 Polysaccharide deacetylase LPH42_10165 PF00462 Glutaredoxin LPH42_10180 PF03466 LysR substrate binding domain LPH42_10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH42_10190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPH42_10200 PF00857 Isochorismatase family LPH42_10210 PF00107 Zinc-binding dehydrogenase LPH42_10210 PF08240 Alcohol dehydrogenase GroES-like domain LPH42_10215 PF00107 Zinc-binding dehydrogenase LPH42_10215 PF08240 Alcohol dehydrogenase GroES-like domain LPH42_10235 PF00873 AcrB/AcrD/AcrF family LPH42_10240 PF00873 AcrB/AcrD/AcrF family LPH42_10245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH42_10250 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LPH42_10250 PF14489 QueF-like protein LPH42_10265 PF00330 Aconitase family (aconitate hydratase) LPH42_10270 PF00694 Aconitase C-terminal domain LPH42_10275 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH42_10290 PF02397 Bacterial sugar transferase LPH42_10305 PF13439 Glycosyltransferase Family 4 LPH42_10305 PF00534 Glycosyl transferases group 1 LPH42_10315 PF01943 Polysaccharide biosynthesis protein LPH42_10330 PF00486 Transcriptional regulatory protein, C terminal LPH42_10330 PF00072 Response regulator receiver domain LPH42_10335 PF05958 tRNA (Uracil-5-)-methyltransferase LPH42_10340 PF01928 CYTH domain LPH42_10345 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH42_10350 PF00156 Phosphoribosyl transferase domain LPH42_10355 PF01048 Phosphorylase superfamily LPH42_10360 PF00313 'Cold-shock' DNA-binding domain LPH42_10370 PF01668 SmpB protein LPH42_10380 PF03658 RnfH family Ubiquitin LPH42_10385 PF04355 SmpA / OmlA family LPH42_10390 PF01475 Ferric uptake regulator family LPH42_10395 PF02463 RecF/RecN/SMC N terminal domain LPH42_10400 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LPH42_10400 PF01628 HrcA protein C terminal domain LPH42_10405 PF01025 GrpE LPH42_10410 PF00012 Hsp70 protein LPH42_10415 PF00226 DnaJ domain LPH42_10415 PF01556 DnaJ C terminal domain LPH42_10415 PF00684 DnaJ central domain LPH42_10425 PF00486 Transcriptional regulatory protein, C terminal LPH42_10425 PF00072 Response regulator receiver domain LPH42_10430 PF01219 Prokaryotic diacylglycerol kinase LPH42_10435 PF01790 Prolipoprotein diacylglyceryl transferase LPH42_10440 PF00303 Thymidylate synthase LPH42_10445 PF00186 Dihydrofolate reductase LPH42_10450 PF13700 Domain of unknown function (DUF4158) LPH42_10450 PF01526 Tn3 transposase DDE domain LPH42_10460 PF00486 Transcriptional regulatory protein, C terminal LPH42_10460 PF00072 Response regulator receiver domain LPH42_10465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH42_10465 PF02702 Osmosensitive K+ channel His kinase sensor domain LPH42_10465 PF00512 His Kinase A (phospho-acceptor) domain LPH42_10465 PF13492 GAF domain LPH42_10465 PF13493 Domain of unknown function (DUF4118) LPH42_10470 PF02669 K+-transporting ATPase, c chain LPH42_10480 PF03814 Potassium-transporting ATPase A subunit LPH42_10495 PF00149 Calcineurin-like phosphoesterase LPH42_10500 PF04379 ApaG domain LPH42_10505 PF00398 Ribosomal RNA adenine dimethylase LPH42_10510 PF00929 Exonuclease LPH42_10515 PF01895 PhoU domain LPH42_10520 PF00005 ABC transporter LPH42_10525 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_10530 PF00528 Binding-protein-dependent transport system inner membrane component LPH42_10535 PF12849 PBP superfamily domain LPH42_10540 PF02254 TrkA-N domain LPH42_10540 PF00999 Sodium/hydrogen exchanger family LPH42_10545 PF00593 TonB dependent receptor LPH42_10545 PF07715 TonB-dependent Receptor Plug Domain LPH42_10550 PF01323 DSBA-like thioredoxin domain LPH42_10560 PF12848 ABC transporter LPH42_10560 PF00005 ABC transporter LPH42_10575 PF01066 CDP-alcohol phosphatidyltransferase LPH42_10580 PF01541 GIY-YIG catalytic domain LPH42_10580 PF02151 UvrB/uvrC motif LPH42_10580 PF08459 UvrC Helix-hairpin-helix N-terminal LPH42_10585 PF01451 Low molecular weight phosphotyrosine protein phosphatase LPH42_10590 PF02348 Cytidylyltransferase LPH42_10595 PF10609 NUBPL iron-transfer P-loop NTPase LPH42_10600 PF00202 Aminotransferase class-III LPH42_10610 PF00490 Delta-aminolevulinic acid dehydratase LPH42_10620 PF12146 Serine aminopeptidase, S33 LPH42_10635 PF13932 GidA associated domain LPH42_10635 PF01134 Glucose inhibited division protein A LPH42_10655 PF13649 Methyltransferase domain LPH42_10675 PF02649 Type I GTP cyclohydrolase folE2 LPH42_10680 PF00132 Bacterial transferase hexapeptide (six repeats) LPH42_10685 PF00873 AcrB/AcrD/AcrF family LPH42_10690 PF00529 HlyD membrane-fusion protein of T1SS LPH42_10690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH42_10695 PF05088 Bacterial NAD-glutamate dehydrogenase LPH42_10700 PF01513 ATP-NAD kinase LPH42_10720 PF12706 Beta-lactamase superfamily domain LPH42_10730 PF00929 Exonuclease LPH42_10730 PF08411 Exonuclease C-terminal LPH42_10745 PF00999 Sodium/hydrogen exchanger family LPH42_10755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LPH42_10765 PF01812 5-formyltetrahydrofolate cyclo-ligase family LPH42_10785 PF03695 Uncharacterised protein family (UPF0149) LPH42_10790 PF00557 Metallopeptidase family M24 LPH42_10790 PF05195 Aminopeptidase P, N-terminal domain LPH42_10795 PF00293 NUDIX domain LPH42_10830 PF01063 Amino-transferase class IV LPH42_10845 PF02954 Bacterial regulatory protein, Fis family LPH42_10855 PF01381 Helix-turn-helix LPH42_10870 PF00535 Glycosyl transferase family 2 LPH42_10880 PF00925 GTP cyclohydrolase II LPH42_10890 PF08534 Redoxin LPH42_10915 PF00959 Phage lysozyme LPH42_10935 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH42_10935 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH42_10935 PF00476 DNA polymerase family A LPH42_10935 PF01612 3'-5' exonuclease LPH42_10960 PF07963 Prokaryotic N-terminal methylation motif LPH42_10960 PF00114 Pilin (bacterial filament) LPH42_10975 PF16123 Hydroxyacylglutathione hydrolase C-terminus LPH42_10975 PF00753 Metallo-beta-lactamase superfamily LPH42_10985 PF00075 RNase H LPH42_10990 PF00929 Exonuclease LPH42_11010 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LPH42_11020 PF13632 Glycosyl transferase family group 2 LPH42_11025 PF02230 Phospholipase/Carboxylesterase LPH42_11030 PF06580 Histidine kinase LPH42_11030 PF07694 5TMR of 5TMR-LYT LPH42_11035 PF00072 Response regulator receiver domain LPH42_11035 PF04397 LytTr DNA-binding domain LPH42_11040 PF03900 Porphobilinogen deaminase, C-terminal domain LPH42_11040 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LPH42_11060 PF00437 Type II/IV secretion system protein LPH42_11065 PF00437 Type II/IV secretion system protein LPH42_11080 PF00535 Glycosyl transferase family 2 LPH42_11090 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH42_11090 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH42_11105 PF09924 Uncharacterised conserved protein (DUF2156) LPH42_11105 PF03706 Lysylphosphatidylglycerol synthase TM region LPH42_11110 PF01042 Endoribonuclease L-PSP LPH42_11125 PF01430 Hsp33 protein LPH42_11130 PF00912 Transglycosylase LPH42_11135 PF05192 MutS domain III LPH42_11135 PF05190 MutS family domain IV LPH42_11135 PF00488 MutS domain V LPH42_11135 PF05188 MutS domain II LPH42_11135 PF01624 MutS domain I LPH42_11140 PF01168 Alanine racemase, N-terminal domain LPH42_11155 PF02237 Biotin protein ligase C terminal domain LPH42_11155 PF08279 HTH domain LPH42_11155 PF03099 Biotin/lipoate A/B protein ligase family LPH42_11160 PF03309 Type III pantothenate kinase LPH42_11190 PF01183 Glycosyl hydrolases family 25 LPH42_11210 PF01381 Helix-turn-helix LPH42_11220 PF07963 Prokaryotic N-terminal methylation motif LPH42_11220 PF00114 Pilin (bacterial filament) LPH42_11320 PF00589 Phage integrase family LPH42_11335 PF00959 Phage lysozyme LPH42_11350 PF00574 Clp protease LPH42_11390 PF01022 Bacterial regulatory protein, arsR family LPH42_11405 PF00873 AcrB/AcrD/AcrF family LPH42_11430 PF00581 Rhodanese-like domain LPH42_11435 PF02556 Preprotein translocase subunit SecB LPH42_11440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LPH42_11440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LPH42_11470 PF12169 DNA polymerase III subunits gamma and tau domain III LPH42_11470 PF12170 DNA polymerase III tau subunit V interacting with alpha LPH42_11475 PF02575 YbaB/EbfC DNA-binding family LPH42_11480 PF02132 RecR protein LPH42_11480 PF13662 Toprim domain LPH42_11485 PF01230 HIT domain LPH42_11495 PF11992 Domain of unknown function (DUF3488) LPH42_11495 PF13559 Domain of unknown function (DUF4129) LPH42_11495 PF01841 Transglutaminase-like superfamily LPH42_11505 PF07726 ATPase family associated with various cellular activities (AAA) LPH42_11505 PF17863 AAA lid domain LPH42_11515 PF02620 Large ribosomal RNA subunit accumulation protein YceD LPH42_11520 PF01783 Ribosomal L32p protein family LPH42_11525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH42_11525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH42_11540 PF00553 Cellulose binding domain LPH42_11540 PF00041 Fibronectin type III domain LPH42_11540 PF01341 Glycosyl hydrolases family 6 LPH42_11545 PF08502 LeuA allosteric (dimerisation) domain LPH42_11545 PF00682 HMGL-like LPH42_11550 PF00291 Pyridoxal-phosphate dependent enzyme LPH42_11560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LPH42_11560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LPH42_11560 PF00205 Thiamine pyrophosphate enzyme, central domain LPH42_11565 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LPH42_11565 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LPH42_11570 PF11818 C-terminal domain of tail specific protease (DUF3340) LPH42_11570 PF00595 PDZ domain LPH42_11570 PF03572 Peptidase family S41 LPH42_11570 PF17804 Tail specific protease N-terminal domain LPH42_11575 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LPH42_11580 PF02566 OsmC-like protein LPH42_11585 PF03969 AFG1-like ATPase LPH42_11590 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH42_11595 PF02492 CobW/HypB/UreG, nucleotide-binding domain LPH42_11595 PF07683 Cobalamin synthesis protein cobW C-terminal domain LPH42_11605 PF00551 Formyl transferase LPH42_11615 PF03109 ABC1 family LPH42_11625 PF12241 Trans-2-enoyl-CoA reductase catalytic region LPH42_11625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LPH42_11625 PF07055 Enoyl reductase FAD binding domain LPH42_11645 PF00881 Nitroreductase family LPH42_11650 PF04264 YceI-like domain LPH42_11655 PF02673 Bacitracin resistance protein BacA LPH42_11660 PF00120 Glutamine synthetase, catalytic domain LPH42_11660 PF03951 Glutamine synthetase, beta-Grasp domain LPH42_11665 PF00543 Nitrogen regulatory protein P-II LPH42_11670 PF00909 Ammonium Transporter Family LPH42_11685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LPH42_11685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LPH42_11690 PF00890 FAD binding domain LPH42_11690 PF02910 Fumarate reductase flavoprotein C-term LPH42_11695 PF02445 Quinolinate synthetase A protein LPH42_11700 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH42_11700 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH42_11705 PF01026 TatD related DNase LPH42_11790 PF01850 PIN domain LPH42_11815 PF02881 SRP54-type protein, helical bundle domain LPH42_11815 PF00448 SRP54-type protein, GTPase domain LPH42_11820 PF00633 Helix-hairpin-helix motif LPH42_11820 PF14815 NUDIX domain LPH42_11820 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH42_11825 PF04362 Bacterial Fe(2+) trafficking LPH42_11835 PF01709 Transcriptional regulator LPH42_11840 PF02075 Crossover junction endodeoxyribonuclease RuvC LPH42_11845 PF07499 RuvA, C-terminal domain LPH42_11845 PF01330 RuvA N terminal domain LPH42_11850 PF02705 K+ potassium transporter LPH42_11855 PF17864 RuvB AAA lid domain LPH42_11855 PF05491 RuvB C-terminal winged helix domain LPH42_11855 PF05496 Holliday junction DNA helicase RuvB P-loop domain LPH42_11860 PF03061 Thioesterase superfamily LPH42_11865 PF01618 MotA/TolQ/ExbB proton channel family LPH42_11870 PF02472 Biopolymer transport protein ExbD/TolR LPH42_11880 PF04052 TolB amino-terminal domain LPH42_11880 PF07676 WD40-like Beta Propeller Repeat LPH42_11885 PF00691 OmpA family LPH42_11895 PF04055 Radical SAM superfamily LPH42_11900 PF00300 Histidine phosphatase superfamily (branch 1) LPH42_11905 PF04493 Endonuclease V LPH42_11910 PF00854 POT family LPH42_11915 PF00255 Glutathione peroxidase LPH42_11920 PF00970 Oxidoreductase FAD-binding domain LPH42_11920 PF00175 Oxidoreductase NAD-binding domain LPH42_11925 PF13667 ThiC-associated domain LPH42_11925 PF01964 Radical SAM ThiC family LPH42_11930 PF10459 Peptidase S46 LPH42_11935 PF00300 Histidine phosphatase superfamily (branch 1) LPH42_11945 PF14850 DNA-binding domain of Proline dehydrogenase LPH42_11945 PF00171 Aldehyde dehydrogenase family LPH42_11945 PF01619 Proline dehydrogenase LPH42_11945 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LPH42_11980 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LPH42_12000 PF04335 VirB8 protein LPH42_12010 PF03743 Bacterial conjugation TrbI-like protein LPH42_12015 PF00437 Type II/IV secretion system protein LPH42_12020 PF02534 Type IV secretory system Conjugative DNA transfer LPH42_12080 PF02796 Helix-turn-helix domain of resolvase LPH42_12080 PF00239 Resolvase, N terminal domain LPH42_12120 PF07282 Putative transposase DNA-binding domain LPH42_12120 PF12323 Helix-turn-helix domain LPH42_12120 PF01385 Probable transposase LPH42_12135 PF08681 Protein of unknown function (DUF1778)